BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (298 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 380 e-104 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 343 3e-93 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 335 1e-90 UniRef50_UPI000190B160 site-specific tyrosine recombinase XerC n... 328 2e-88 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 302 7e-81 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 299 6e-80 UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella den... 295 2e-78 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 295 2e-78 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 283 4e-75 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 282 9e-75 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 279 1e-73 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 275 2e-72 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 273 7e-72 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 259 7e-68 UniRef50_C0ARW8 Putative uncharacterized protein n=1 Tax=Proteus... 259 8e-68 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 257 4e-67 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 249 1e-64 UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular orga... 249 1e-64 UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomi... 247 3e-64 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 235 1e-60 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 233 4e-60 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 230 4e-59 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 229 1e-58 UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Prote... 228 3e-58 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 226 7e-58 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 226 7e-58 UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychr... 225 1e-57 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 225 2e-57 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 223 9e-57 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 222 1e-56 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 221 2e-56 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 219 6e-56 UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferro... 219 1e-55 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 214 2e-54 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 214 3e-54 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 214 4e-54 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 213 4e-54 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 213 5e-54 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 212 1e-53 UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter ... 212 1e-53 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 212 1e-53 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 212 1e-53 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 210 4e-53 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 210 4e-53 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 209 7e-53 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 209 8e-53 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 209 8e-53 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 208 2e-52 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 207 3e-52 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 207 3e-52 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 207 3e-52 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 207 3e-52 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 207 4e-52 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 207 4e-52 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 207 5e-52 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 206 8e-52 UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexu... 206 1e-51 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 206 1e-51 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 205 1e-51 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 205 1e-51 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 205 1e-51 UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulos... 204 4e-51 UniRef50_D0L0D4 Integrase family protein n=1 Tax=Halothiobacillu... 203 6e-51 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 203 7e-51 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 202 8e-51 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 202 9e-51 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 202 1e-50 UniRef50_B5ENS4 Integrase family protein n=2 Tax=Acidithiobacill... 202 1e-50 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 201 2e-50 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 201 2e-50 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 201 2e-50 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 201 2e-50 UniRef50_A5EWX9 Site-specific recombinase XerC n=1 Tax=Dicheloba... 200 4e-50 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 199 1e-49 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 199 1e-49 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 198 2e-49 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 198 2e-49 UniRef50_C6NUR2 Tyrosine recombinase xerC n=1 Tax=Acidithiobacil... 198 2e-49 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 198 2e-49 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 197 3e-49 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 196 7e-49 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 196 1e-48 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 196 1e-48 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 195 1e-48 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 195 1e-48 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 195 2e-48 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 195 2e-48 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 194 2e-48 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 194 2e-48 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 194 3e-48 UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desu... 194 3e-48 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 193 5e-48 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 193 7e-48 UniRef50_UPI000190F72D site-specific tyrosine recombinase XerC n... 193 7e-48 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 192 9e-48 UniRef50_C8N6J9 Tyrosine recombinase XerC n=1 Tax=Cardiobacteriu... 192 1e-47 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 192 1e-47 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 192 1e-47 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 192 2e-47 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 191 2e-47 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 191 3e-47 UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira Rep... 191 3e-47 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 190 4e-47 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 190 5e-47 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 190 5e-47 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 190 5e-47 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 189 8e-47 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 189 8e-47 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 189 1e-46 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 188 2e-46 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 188 2e-46 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 188 2e-46 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 188 2e-46 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 187 3e-46 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 187 3e-46 UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acido... 187 3e-46 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 187 4e-46 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 187 6e-46 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 186 7e-46 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 186 8e-46 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 186 8e-46 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 186 1e-45 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 186 1e-45 UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella Rep... 185 1e-45 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 185 2e-45 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 185 2e-45 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 184 2e-45 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 184 2e-45 UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacil... 184 3e-45 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 184 4e-45 UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Br... 183 5e-45 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 183 6e-45 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 182 9e-45 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 182 1e-44 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 182 1e-44 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 182 1e-44 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 182 1e-44 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 182 2e-44 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 182 2e-44 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 181 2e-44 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 181 2e-44 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 181 3e-44 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 181 3e-44 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 181 3e-44 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 181 3e-44 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 180 5e-44 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 180 5e-44 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 180 5e-44 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 179 8e-44 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 179 8e-44 UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella a... 179 9e-44 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 179 1e-43 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 179 1e-43 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 179 1e-43 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 178 2e-43 UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteria... 178 2e-43 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 177 3e-43 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 177 3e-43 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 177 3e-43 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 177 3e-43 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 177 4e-43 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 177 4e-43 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 177 5e-43 UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilag... 177 5e-43 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 177 5e-43 UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepI... 177 5e-43 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 176 6e-43 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 176 6e-43 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 176 7e-43 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 175 1e-42 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 175 2e-42 UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID... 175 2e-42 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 175 2e-42 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 175 2e-42 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 174 3e-42 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 174 3e-42 UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alpha... 174 3e-42 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 174 4e-42 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 173 5e-42 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 173 5e-42 UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 173 6e-42 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 173 6e-42 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 173 8e-42 UniRef50_A6G048 Site-specific recombinase, phage integrase famil... 173 8e-42 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 172 1e-41 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 172 1e-41 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 171 3e-41 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 171 3e-41 UniRef50_A5VJJ3 Tyrosine recombinase XerD subunit n=8 Tax=Lactob... 171 3e-41 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 171 3e-41 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 171 4e-41 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 171 4e-41 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 171 4e-41 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 170 5e-41 UniRef50_A3M0R9 Site-specific tyrosine recombinase n=1 Tax=Acine... 170 6e-41 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 170 7e-41 UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdema... 169 7e-41 UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcu... 169 1e-40 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 168 2e-40 UniRef50_Q1GE03 Phage integrase n=13 Tax=Rhodobacterales RepID=Q... 168 2e-40 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 168 3e-40 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 167 3e-40 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 167 4e-40 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 167 4e-40 UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepI... 167 4e-40 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 167 5e-40 UniRef50_A3VV31 Integrase/recombinase XerC, putative n=1 Tax=Par... 166 7e-40 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 166 8e-40 UniRef50_A6GU46 Tyrosine recombinase XerC n=1 Tax=Limnobacter sp... 166 1e-39 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 166 1e-39 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 165 1e-39 UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax... 165 2e-39 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 165 2e-39 UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n... 165 2e-39 UniRef50_Q8XTL6 Tyrosine recombinase xerC 2 n=1 Tax=Ralstonia so... 165 2e-39 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 165 2e-39 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 164 2e-39 UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybac... 164 3e-39 UniRef50_C9RKS4 Integrase family protein n=1 Tax=Fibrobacter suc... 164 3e-39 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 164 3e-39 UniRef50_A1B4Z4 Phage integrase family protein n=21 Tax=Alphapro... 164 3e-39 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 164 4e-39 UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes ... 164 4e-39 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 164 4e-39 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 164 4e-39 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 164 5e-39 UniRef50_C6X054 Integrase, site-specific recombinase n=2 Tax=Fla... 163 5e-39 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 163 6e-39 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 163 7e-39 UniRef50_B0MSP3 Putative uncharacterized protein n=1 Tax=Alistip... 163 8e-39 UniRef50_B3DX82 Site-specific recombinase XerD n=1 Tax=Methylaci... 162 1e-38 UniRef50_C5BWU3 Integrase family protein n=11 Tax=Actinomycetale... 162 2e-38 UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endorif... 162 2e-38 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 162 2e-38 UniRef50_B6IPE2 Tyrosine recombinase xerC n=11 Tax=Alphaproteoba... 161 2e-38 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 161 2e-38 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 161 2e-38 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 161 2e-38 UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochlori... 160 3e-38 UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria Rep... 160 4e-38 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 160 4e-38 UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales R... 160 5e-38 UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=... 160 5e-38 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 160 6e-38 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 160 7e-38 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 160 7e-38 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 159 8e-38 UniRef50_Q11CV1 Tyrosine recombinase XerC subunit n=7 Tax=Alphap... 159 8e-38 UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales ... 159 1e-37 UniRef50_C2MBI5 Site-specific recombinase, phage integrase famil... 159 1e-37 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust. Identities = 188/294 (63%), Positives = 228/294 (77%), Gaps = 1/294 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L +ER+ YL ER+LS T NY+RQL I E + +WQQ D VR A + Sbjct: 6 LEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKG 65 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R GL A+SLA+RLSALRSFFD+LV QN LKANPAKGV+AP+ R LPKN+DVD+MN+LL Sbjct: 66 MRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLL 125 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D++ +DPLA+RDRAM+E+MYGAGLRL+ELVG+D++H+ L G++ V+GKG KER +P Sbjct: 126 DVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185 Query: 184 NAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A W+ WL LRD +E+ ALF+SKLG RIS RNVQKR AEWG KQ +++H++PHKL Sbjct: 186 LAREWVAKWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKL 245 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFATHMLESSGDLR VQELLGHANLSTTQIYTHLDFQHLA VYD AHPRAK+ Sbjct: 246 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 299 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 343 bits (881), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 167/296 (56%), Positives = 223/296 (75%), Gaps = 1/296 (0%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + L ++++ YL E+ LS T NY++QLE + GL++W Q D VR A Sbjct: 11 SGLRKPLDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAG 70 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + R+G+ A+S+A RLS+LRSFFD+L+ + L ANPAKGVSAP+ R LPKN+DVD++N+ Sbjct: 71 KGMREGMKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQ 130 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LL+++ +DPLA+RDRA++E+MYGAGLRL+ELV +D++ + L SGE+ V+GKG+KER++P Sbjct: 131 LLEVNEDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPF 190 Query: 182 GRNAVAWIEHWLDLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 AV W+ WL +R L + ALF+SKLG RIS R+VQKR AEWG KQ + +H+ PH Sbjct: 191 AGMAVEWVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPH 250 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 KLRHSFATH+LESS +LR VQELLGH N+STTQIYTHLDFQHLA VYD AHPRA++ Sbjct: 251 KLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARK 306 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 162/295 (54%), Positives = 217/295 (73%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L+ + Y YL +E+Q S TL NYQRQL A+ + S+ G+ +WQ+ + VR +S Sbjct: 8 LYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQS 67 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++GLGA S+ALRL ALR +F +L+ Q ++ NPA G+ APKA + LPKNID + + +LL Sbjct: 68 NKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLL 127 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D ++P +RD AM+E+MY +GLRLSEL GLD+ +DL EV ++GKG+KER +PIG Sbjct: 128 TSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGS 187 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 A+ + WL +R+ F +D+A+FL+K G R+S R++Q +WG KQGL +H+HPHKLR Sbjct: 188 KALEALNRWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLR 247 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HSFATHMLE+SGDLR VQELLGH+NL+TTQIYTHLDFQHLA +YDAAHPRAKR K Sbjct: 248 HSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKK 302 >UniRef50_UPI000190B160 site-specific tyrosine recombinase XerC n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190B160 Length = 236 Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/170 (92%), Positives = 165/170 (97%) Query: 78 SALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRA 137 SALRSFFDWLVSQ ELKANPAKGVSAPKAPRHLPKNIDVDD+NRLLDID+NDPLAVRDRA Sbjct: 1 SALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRA 60 Query: 138 MLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRD 197 MLEVMYGAGLRLSELVGLDIKHLDL++GEVWVMGKGSKERRLPIGRNAV WIEHWLDLR Sbjct: 61 MLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRG 120 Query: 198 LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 LF S+++ALFLSKLGKRISARNVQKRFAEWGIKQGLN+HVHPHKLRHSF Sbjct: 121 LFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFG 170 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 302 bits (774), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 152/291 (52%), Positives = 199/291 (68%), Gaps = 2/291 (0%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE +L +L +ERQ+S TL Y+R L A+I +AS G + Q D +R F R+G Sbjct: 31 VEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHRRG 90 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L SL RLSA RS++ WL+ + +PA + APKAPR LP+ +D D+ RL+++ Sbjct: 91 LSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEVPT 150 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + PL +RDRA+LE+ Y +GLRLSEL L + LDL+SG V V+GKG K+R +P+G +AVA Sbjct: 151 DAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHAVA 210 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + W RD GS +F + G IS R VQ R + ++QG+ HVHPH LRHSFA Sbjct: 211 ALRAW--QRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLRHSFA 268 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 +H+LESSGDLRGVQELLGH++++TTQIYTHLDFQHLA VYDAAHPRAKR K Sbjct: 269 SHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRKK 319 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 299 bits (766), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 146/298 (48%), Positives = 206/298 (69%), Gaps = 3/298 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +D++RYL L E++ S T+ NY+RQLE ++ F + G +WQQ +R + Sbjct: 1 MESDIQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKR 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+G +S AL+LSA+R F ++L+S+ ++ NPA GV PK + LPKNIDVD +N L Sbjct: 61 HRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + ++P+ VRD+AM+E++Y +G+RL+EL +DI L + V+GKG+K R +P G Sbjct: 121 DQMPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFG 180 Query: 183 RNAVAWIEHWLDLRDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + WL R+ F S++ ALFLS+ G R++ R +Q+R A WG K GLN+ +HPH Sbjct: 181 NSSKKVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPH 240 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 KLRHS ATH+LESS DLR VQELLGHA++STTQIYTHLDFQHLA YDAAHPRA++ K Sbjct: 241 KLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKKK 298 >UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S88_SHEDO Length = 321 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/310 (50%), Positives = 208/310 (67%), Gaps = 21/310 (6%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLE----------AIINFASE----NGLQS------WQ 49 R+ RYL+ ERQLSP T+ NY +L ++ +A++ N + S W Sbjct: 9 RFERYLTSERQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTDEQWL 68 Query: 50 QCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRH 109 ++ + R+GL SL+L LSAL+ FF++L++++ + NPAKG+SAPK + Sbjct: 69 ALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQAKP 128 Query: 110 LPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV 169 LPKNIDVD ++ LL ID +DPL +RDRA++E+ Y +GLRL EL L+ + L EV V Sbjct: 129 LPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVKV 188 Query: 170 MGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWG 228 +GKG KERR+P+G+ A+ + W R L D+ ALF+S GKR+S R++Q R A+WG Sbjct: 189 LGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKWG 248 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 Q L+ VHPHKLRHSFATHMLESSGDLR VQELLGHANLSTTQIYT LDFQHLA VYD Sbjct: 249 QNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYD 308 Query: 289 AAHPRAKRGK 298 AHPRAK+G+ Sbjct: 309 GAHPRAKKGR 318 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 152/299 (50%), Positives = 202/299 (67%), Gaps = 2/299 (0%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M L D+ +L +L ER LSP TL YQR L ++ +ENGL +R FA Sbjct: 1 MATLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFA 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+GL S+ LS+LRS F +LV + L NPA+GV+AP+ PR LP + D+ Sbjct: 61 AARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAA 120 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL+ +DPLA+RDRA+ E++Y +GLRL+E VGLD+ LDL G V V+GKG+K RR+ Sbjct: 121 RLLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRV 180 Query: 180 PIGRNAVAWIEHWLDLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 P+G A ++ WL +R L G+++ A+F+S+ G R+SAR+VQ R A G+ VH Sbjct: 181 PVGGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVH 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFA+H+LESSGDLR VQELLGHA+++TTQ+YTHLDFQHLA VYD AHPRA++G Sbjct: 241 PHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRARKG 299 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 141/289 (48%), Positives = 191/289 (66%), Gaps = 1/289 (0%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 + Y+ E+Q SP T NY R LE + + G+Q + D VR R+GL Sbjct: 15 FYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASLHRQGLAG 74 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDP 130 SL LS+LR FF + + + + NPA G++APK P+ LPK +DVD + + ++ +D Sbjct: 75 KSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFVAVEGDDF 134 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 + RDRA+LE++Y +GLRL+E+ L++ +D V V GKGSK R LP+G A+A ++ Sbjct: 135 IHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGSVAIAALK 194 Query: 191 HWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATH 249 WL R+ + + + ALF+++ GKRIS R VQ R + ++QG++N VHPH LRHSFA+H Sbjct: 195 DWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRHSFASH 254 Query: 250 MLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 MLESSGDLR VQELLGHAN+STTQIYTHLDFQHLA VYD AHPRA R K Sbjct: 255 MLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAGRKK 303 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 282 bits (722), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 144/296 (48%), Positives = 200/296 (67%), Gaps = 6/296 (2%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 T + + YL ERQ S T+ Y QL + S+ W +R +++ R Sbjct: 18 TPITLFSDYLKFERQYSAHTVNQYVSQLGFAALYFSK-LCDDWFSVQGEHIRRYSMALRS 76 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKA----NPAKGVSAPKAPRHLPKNIDVDDMNR 121 K L +++L+LS +RS + +L ++N K NPA G+ PK + LPKN+DVD M R Sbjct: 77 KQLSGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMAR 136 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LL+I ++PLA+RD+AM+E+MY +GLR+SELVG +++ + +GE+ V GKG+KER +P+ Sbjct: 137 LLEIPDDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPV 196 Query: 182 GRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 G A+ ++ WL +R F + D+ A+FLS RIS R V+ R EWGIKQG+++ VHPH Sbjct: 197 GSKALNALKKWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPH 256 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 KLRHSFA+H+LESSGDLR VQELLGH++LS TQ+YTHLDFQHLA VYD HPRAK+ Sbjct: 257 KLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 312 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 141/295 (47%), Positives = 203/295 (68%), Gaps = 7/295 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V +L +L+ ER+LSP T+ YQR L I + G Q W V +R+ A R+G Sbjct: 12 VNTFLTHLASERRLSPHTVNGYQRDL---IEARTLLGSQPWDTLTVHDMRSLAASLHRQG 68 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 ++ LS LR+FF +L+ + + NPA + APK+ + LPK +DVD ++ LLD Sbjct: 69 KSGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGT 128 Query: 128 N--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + +PLA+RD+A++E++Y GLRL+EL+ L++ +DL ++ V GKG+K R+LP+G+ A Sbjct: 129 SNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPA 188 Query: 186 VAWIEHWLDLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + + WL +R + S+ +ALF+SK G+R+S +VQ+R +++GL+ H+HPHKLR Sbjct: 189 LTAVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLR 248 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HSFATH+LESSGDLR VQELLGHA+L+TTQ+YTHLDFQHLA VYD AHPRA+R K Sbjct: 249 HSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRRK 303 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/291 (46%), Positives = 192/291 (65%), Gaps = 5/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V++YL YL+ ++ SP T+ Y R ++ +I + G W +R+ V +R+ Sbjct: 12 VQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTARKTH 71 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L S+ LS+ RSFF +L+ QN +K NP G+ APK+PR LP ++D D ++++L+ I Sbjct: 72 LAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVLNATI 131 Query: 128 --NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 +DP+A+RD+AMLE+ Y GLRL+EL L++ +DL + V GKG+K R+LPIGR A Sbjct: 132 TSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPIGRQA 191 Query: 186 VAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 + ++ WL R D +ALF++ G+R+ R +Q R A G H+HPH LRH Sbjct: 192 ITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHG--QHIHPHMLRH 249 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 SFA+H+L+SSGDLR VQELLGH+N+STTQ+YTHLD+QHLA VYD AHPRA+ Sbjct: 250 SFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQ 300 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 273 bits (697), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 148/276 (53%), Positives = 179/276 (64%), Gaps = 6/276 (2%) Query: 22 SPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALR 81 SP T Y+R L+A+ A+ G Q +R R KG SLA LSA R Sbjct: 40 SPHTRSAYRRDLQAL---AALQGAQDPATLTAQQIRLAVARLHAKGHIGRSLARMLSAWR 96 Query: 82 SFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--IDINDPLAVRDRAML 139 FFDWL+ Q +L ANP G+ PK+P+ LPK + VD + LLD ID D LA+RD+AM Sbjct: 97 GFFDWLIEQEKLPANPCHGIRPPKSPKTLPKALPVDATSALLDAPIDPEDDLALRDQAMF 156 Query: 140 EVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF 199 E++Y GLRLSEL GLD+ LDL G + GKG+K R LPIGR A +E WL +R Sbjct: 157 ELLYSCGLRLSELTGLDLADLDLGEGLLTAHGKGNKTRILPIGRQARQALERWLAIRPSQ 216 Query: 200 GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRG 259 E A+F K G+R+S R V+KR +W + G + HVHPH LRHSFA+H+L+SSGDLR Sbjct: 217 PGEG-AVFTGKSGRRLSGRQVEKRLEQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRA 275 Query: 260 VQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 VQELLGHANLSTTQIYT LDFQHLA VYDA HPRAK Sbjct: 276 VQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRAK 311 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 134/295 (45%), Positives = 192/295 (65%), Gaps = 6/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 H ++ YL +L ER+ S +T +Y R L + ++ L + V+ +R + + Sbjct: 24 HAYLQGYLAWLLGERRYSKLTAESYARDLAHLFELSTGLALN---ELKVSHIRRYIAQLH 80 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 GLG SLA LSA R F+++L+ + NP G+ APK+ R LP+ + D R++D Sbjct: 81 SSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVD 140 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL--DLESGEVWVMGKGSKERRLPIG 182 + + P ++RD+AM E+ Y +GLRL EL+ LD + + D+ +GEV V GKG K R +P+G Sbjct: 141 LPTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLG 200 Query: 183 RNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A++ + WL +R + + ALF+ G RIS R VQ R +WGIKQG+ + VHPH Sbjct: 201 GCAISALHEWLAVRPTLANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHM 260 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L+SSGDLR VQE+LGHA++STTQ+YTHLDFQ+L+ +YDAAHPRAKR Sbjct: 261 LRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAKR 315 >UniRef50_C0ARW8 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0ARW8_9ENTR Length = 237 Score = 259 bits (662), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 122/226 (53%), Positives = 165/226 (73%), Gaps = 1/226 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L T +E++LRY+ VER+LSP+T+ NY RQL A+ + W + VR +S Sbjct: 11 LSTAIEQFLRYIQVERRLSPVTVENYHRQLMALAQMMVAMKITQWISLESQHVRMLLAKS 70 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R GL SLALR SALRSF DW V+Q L+ NPAKG+ PK+ RHLPKN+DVD++++L+ Sbjct: 71 NRSGLQPTSLALRFSALRSFLDWQVAQGMLEVNPAKGIRTPKSGRHLPKNMDVDEVSQLM 130 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 +ID+ DPL+VRDR MLEVMYGAGLRLSEL L+I +D+ GEV V+GKGSKER++P+GR Sbjct: 131 NIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNISDIDMNEGEVRVLGKGSKERKVPLGR 190 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLS-KLGKRISARNVQKRFAEWG 228 A+ W+++W +R+L+ ED A+F+S + GKR+S R+VQKRF WG Sbjct: 191 KALEWLQNWFPIRELYAPEDKAVFISTQSGKRLSVRSVQKRFELWG 236 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/285 (49%), Positives = 181/285 (63%), Gaps = 3/285 (1%) Query: 17 VERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF-AVRSRRKGLGAASLAL 75 + R+ S T Y+R L A + L W D +R + R R L A SL Sbjct: 16 LARRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYVGTRHHRGELSARSLQR 75 Query: 76 RLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRD 135 L+A+R FFD L+ + L NPA+ V P++ R LP+ +DVD + LLD +D L RD Sbjct: 76 LLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVAGLLDAPADDRLETRD 135 Query: 136 RAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV-MGKGSKERRLPIGRNAVAWIEHWLD 194 RAM E+ Y +GLRLSELVGLD+ +D +G V+V GKG K R +P+G A+ I WL+ Sbjct: 136 RAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARYVPVGAKALEAIGAWLE 195 Query: 195 LRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLES 253 R L G+ ALFLS+ G+RI+ R V+ R W K GL+ VHPH LRHSFA+HMLE+ Sbjct: 196 ARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHPHMLRHSFASHMLEA 255 Query: 254 SGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 SGDLR VQELLGHA L+TTQIYTH+DFQ LA+VYD +HPRA+R + Sbjct: 256 SGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARRDR 300 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/295 (48%), Positives = 185/295 (62%), Gaps = 11/295 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNFAVRSRR 65 + R++ +L+V + SP TL Y+ +E + EN +Q+ D T +R + Sbjct: 5 IRRFIEHLAVAGR-SPHTLAAYRADIELL-----ENMMQAKSARDATAAELRKALAKLHA 58 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 +GL + SLA RLS+ R F+ WL E + NPA G+ APK + LPK + VD LLD Sbjct: 59 QGLSSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDR 118 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 I+ L RDRA+ E++Y GLRLSE V L++ +D + + GKG KER +PIG Sbjct: 119 IEGESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAE 178 Query: 185 AVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 A+ + WL R G ++ ALFL + G R+ R V+KR +W IK G HVHPH LRH Sbjct: 179 AMLRLRTWLGERSA-GMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRH 237 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA-KRGK 298 SFA+HML+SSGDLR VQELLGHANLS+TQIYT LDFQHLA VYD AHPRA KRGK Sbjct: 238 SFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARKRGK 292 >UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular organisms RepID=XERC_RALPJ Length = 328 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/316 (44%), Positives = 188/316 (59%), Gaps = 28/316 (8%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 H + YL L ERQLSP TL +Y R+L + G Q D+T +++ +R Sbjct: 16 HPQIAAYLDALKFERQLSPHTLQSYTRELAVLQRL----GAQHAANIDLTQLQSHHIRRM 71 Query: 65 RK-----GLGAASLALRLSALRSFFDWLVSQNE-LKANPAKGVSAPKAPRHLPKNIDVDD 118 GL S+A LSA R +F W+ ++ + ANP GV APK+P+ LPK + V+ Sbjct: 72 MAQLHGDGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQ 131 Query: 119 MNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKH-----------LDLESGE 166 L++ + +D +RDRA+ E+ Y GLRLSELV LD++H LDLE+ E Sbjct: 132 AVALMEQLPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEARE 191 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED------DALFLSKLGKRISARNV 220 V V+GKGSK R +P+G A + WL +R D ALFLS GKR++ R + Sbjct: 192 VQVLGKGSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQI 251 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 Q R I G+ VHPH LRHSFATHML+SSGDLR VQELLGHA++++TQ+YT LDF Sbjct: 252 QLRMKRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDF 311 Query: 281 QHLASVYDAAHPRAKR 296 QHLA +YD AHPRAK+ Sbjct: 312 QHLAKIYDQAHPRAKK 327 >UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IL8_THICR Length = 317 Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 200/315 (63%), Gaps = 25/315 (7%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA---------SENGLQS--------- 47 +D +R+++ L +E + S T+ NYQR L ++ F E L+S Sbjct: 2 SDYQRFIKQLKLENK-SEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLDQ 60 Query: 48 ---WQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAP 104 WQ + +++ F ++G+ A S+A +LSA+R+F+ +L+ Q NPAKG+ AP Sbjct: 61 FDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKAP 120 Query: 105 KAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKH-LD-L 162 K P+ LPK++DVD +LL+ + VRD+A+ E++Y GLR+SELV LD+ LD L Sbjct: 121 KQPKALPKSLDVDLTRQLLEQPLKTWQDVRDQAIFEILYSGGLRVSELVELDLSPGLDGL 180 Query: 163 ESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQ 221 SG V V+GKG KER P+G+ A + WL++R + + A+F+++ GKR+ R++Q Sbjct: 181 ASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVRSIQ 240 Query: 222 KRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 281 + + ++ GL + PH+LRH+ ATH+LESSGDLR VQE+LGHANLSTTQIYT LD Q Sbjct: 241 TQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQ 300 Query: 282 HLASVYDAAHPRAKR 296 HLA+VYD AHPRAK+ Sbjct: 301 HLATVYDKAHPRAKK 315 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/291 (40%), Positives = 186/291 (63%), Gaps = 6/291 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++++L Y+ E++LS +T+ NYQ + +I ++ L + D+ + + + G Sbjct: 6 LDQFLNYIKFEKRLSELTIKNYQNDINRLI-LINDKKLTEFNSEDIRLSLS---KLHASG 61 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L SL+ LS+ RS F + +K +P G+ APK+ + LP+ + +D + L++I Sbjct: 62 LSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQ 121 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + + RDRA+LE Y +GLRLSELV + + +D + V+GKG+K R +P+GR A+ Sbjct: 122 TNFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKAIE 181 Query: 188 WIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 ++ W+ R+ +D+ LFL++ GK+++AR +Q R W K + ++HPH LRHS Sbjct: 182 ALDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHS 241 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 FA+H+L+SS DLR VQELLGH+N+STTQIYTHLDFQHL+ +YD AHPR+K+ Sbjct: 242 FASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSKK 292 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/296 (41%), Positives = 193/296 (65%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + +YL YLSVE+ +S TL NY+ L +N+ E + S+ + D ++R++ Sbjct: 1 MQENFNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 KG+ S+A +LSA+RSF+ +L+ + ++ NP S+P+ + LP+ + ++++LL Sbjct: 61 IAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D + P +RD+A +E++Y +GLR+SELV LDI++LDL S ++ V GKGSKER + +G Sbjct: 121 RMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMG 180 Query: 183 RNAVAWIEHWLDL-RDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ I+ +L+L R L + + ALFL+ G R+SAR+ Q+R + + G+ HVHP Sbjct: 181 LPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRH+FATH+L+ DLR VQELLGH+NLSTTQIYTH+ VY ++HP AK Sbjct: 241 HMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAK 296 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 230 bits (586), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/298 (43%), Positives = 176/298 (59%), Gaps = 13/298 (4%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFA---SENGLQSWQQCDVTM-----VRNFAVR 62 YL YLS R LS T +Y+R L A++ ENG +T +R+F R Sbjct: 20 YLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIRHFIAR 79 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL SLA LSA R F+ +L+ + NP V PK+P LP + D+ +L Sbjct: 80 LHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPDEAAQL 139 Query: 123 LDIDI--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + ND LA RD A+ E+ Y +GLRL+EL L +D G V V GKG+K R +P Sbjct: 140 LTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNKTRIVP 199 Query: 181 IGRNAVAWIEHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +G A+ ++ WL LR L E ALFLS+ G+RI R + R + Q L++ VH Sbjct: 200 VGELALRALQAWLPLRSAWLIPGET-ALFLSQRGRRIHPRTIAYRLHQRAQLQNLDSRVH 258 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFA+H+L+SSGDLR VQE+LGH+++ +TQ+YTHLDFQHLA +YD AHPRA++ Sbjct: 259 PHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARK 316 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 6/302 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE--NGLQSWQQCDVTMVRNFA 60 DLH ++ +LRYL +ER S +TL +Y LE+++ + +E L Q ++ +R + Sbjct: 11 DLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYV 70 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 ++A RL+ LRSFF + + K NPAK + P+ R LP + D + Sbjct: 71 AYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIG 130 Query: 121 RLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ N + +RDRA+LE +Y AGLR+SELV L++ D ++ + V+GKG KER Sbjct: 131 TLLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIA 190 Query: 180 PIGRNAVAWIEHWLDLRDL---FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 PIG A + HWL+ R+ + DALFL++L R+++R+V + ++ ++ GL+ Sbjct: 191 PIGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKK 250 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRH+FATH+L+ DLR VQELLGH +L+TTQIYTH+ + L Y+ AHP A+R Sbjct: 251 TSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHAQR 310 Query: 297 GK 298 K Sbjct: 311 SK 312 >UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Proteobacteria RepID=Q1LSD3_RALME Length = 369 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 134/315 (42%), Positives = 185/315 (58%), Gaps = 30/315 (9%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAI----INFASENGLQSWQQCDVTMVRNFAVRS 63 V RYL +L+ R+L+ TL +Y L + I A L + + +R+FA R Sbjct: 31 VVRYLDWLATSRKLAAHTLTSYGHDLSVLQSQAIRLAPGVALLA---LETRHIRSFAARL 87 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNE-LKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL A ++A LSA R F+ W +++NP GV APK R LPK + V+ L Sbjct: 88 HGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVAL 147 Query: 123 L---DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKH-----------LDLESGEVW 168 + D N+ L RD+A+ E+ Y +GLRLSEL+ LD+++ LDL+ EV Sbjct: 148 VAHRQDDTNESL--RDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAEVT 205 Query: 169 VMGKGSKERRLPIGRNAVAWIEHWLDLRDL------FGSEDDALFLSKLGKRISARNVQK 222 V+GKGS+ R +P+G A+ ++ W+ +R++ + ALFL G+R+ VQ+ Sbjct: 206 VLGKGSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHALFLGTRGRRLPISTVQQ 265 Query: 223 RFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH 282 R + G+ + VHPH LRHSFATHML+SSGDLR VQE+LGHA++STTQIYT LDFQH Sbjct: 266 RIKRQALAAGVPSDVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQH 325 Query: 283 LASVYDAAHPRAKRG 297 LA VYD AHPRA R Sbjct: 326 LAKVYDQAHPRAGRA 340 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 226 bits (576), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 125/280 (44%), Positives = 179/280 (63%), Gaps = 11/280 (3%) Query: 25 TLLNYQRQLEAIINFASENGLQSWQQCDVTM---VRNFAVRSRR---KGLGAASLALRLS 78 T+ Y+R LE + FA + S + V R+F RR +GL A +LA +LS Sbjct: 55 TVAAYRRDLEEL--FALLAQMPSEAEGGVPQDLSRRDFTAALRRLSQRGLNARTLARKLS 112 Query: 79 ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--IDINDPLAVRDR 136 + R + WLV + + A+P G+S PK P+ +PK + + +NR+LD +D DPLAVRD Sbjct: 113 SWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLNRMLDLPVDGGDPLAVRDH 172 Query: 137 AMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLR 196 A+ E+MYG+GLR+SE+ GL+ + L+ V V GKG K+R++P+ + ++++L LR Sbjct: 173 ALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSAEALKNYLPLR 232 Query: 197 DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGD 256 S+ ALF + G R+S R +QKR A+W G HV PH +RHS+A H+L++S D Sbjct: 233 QT-ASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSPHMMRHSYAGHLLQASRD 291 Query: 257 LRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 +R VQELLGH++LSTTQIYT LDF H+A +YD AHPRAKR Sbjct: 292 IRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 226 bits (576), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 184/289 (63%), Gaps = 4/289 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ +L L + S T+ NY+R L + + + + + D+ M + + +G Sbjct: 7 IDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILM---WVKKLHAQG 63 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 + +L +LS+LRSFF++L++ +K NP G+ APK+ + LPK ++ D++ LLDI Sbjct: 64 NSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKP 123 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 ++ + RD A +++Y G+RLSEL +++K +++ + V+GKG+KER + G + Sbjct: 124 SNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLI 183 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + WL+ RD + + + LF+S+ G+ ++ R++QKR + K H+HPH LRHSFA Sbjct: 184 NLNRWLNTRDTYSPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYA-TKHIHPHMLRHSFA 242 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 TH+L+SS DL V++LLGHA++S+TQIYTHL+FQ LASV+D AHPRAK+ Sbjct: 243 THVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 >UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychrobacter RepID=Q1QE98_PSYCK Length = 349 Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/302 (43%), Positives = 183/302 (60%), Gaps = 10/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDV-TMVRNF 59 +++L V R+L LSV R SP TL Y L + F L +W +CD + ++ Sbjct: 39 LSELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKRL-TWTRCDKRQLAQHI 96 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + R L AS+ LSA+R F+ WL+ ++ + NP G ++PR LP DVD + Sbjct: 97 SQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLL 156 Query: 120 NRLLDIDINDP-----LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 +LLD +I D L +RD+AM E++Y +GLR+ ELV LDI +DL V V GKG+ Sbjct: 157 TQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGN 216 Query: 175 KERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLS-KLGKRISARNVQKRFAEWGIKQG 232 K R +P+G A I +L R+L+ + D ALF+S KLG R+S R VQ+R + G Sbjct: 217 KTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAG 276 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + +++PH LRH FA+HML SGDLR VQE+LGH+++STTQIYTH+DF L VYD AHP Sbjct: 277 IAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHP 336 Query: 293 RA 294 RA Sbjct: 337 RA 338 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 129/314 (41%), Positives = 183/314 (58%), Gaps = 25/314 (7%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQ-----QCDVTMVRNFAVR 62 ++R+ +L ER+LS T Y+R LEA F +E + Q D + F R Sbjct: 6 LQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLGR 65 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R+GL ++ R++ALR++F+++ + + NPA VS+PKAP+ LP+ V+ L Sbjct: 66 GHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLNL 125 Query: 123 LDIDINDPLA----------------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 LD PL+ +RD A+LE++Y AGLR+SE LD +DL GE Sbjct: 126 LDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGGE 185 Query: 167 VWVM-GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDAL---FLSKLGKRISARNVQK 222 + V GKG K+R +P+GR AVA IE WL R + D + F +LGKR+++R Q+ Sbjct: 186 LRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQR 245 Query: 223 RFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH 282 +W + L V PH LRH+FATH+L++ DLR +QE++GHA+LS TQ YTHLD Q Sbjct: 246 LLEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQA 305 Query: 283 LASVYDAAHPRAKR 296 LA VYDAAHPRA+R Sbjct: 306 LAKVYDAAHPRAQR 319 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 124/283 (43%), Positives = 175/283 (61%), Gaps = 17/283 (6%) Query: 25 TLLNYQRQLEAIINFASENGLQSWQQCDVTMV------RNFAVRSRR---KGLGAASLAL 75 T+ Y+R LE + L DV V R+F RR +GL A +LA Sbjct: 26 TVAAYRRDLEELFAL-----LAQMPSEDVGGVPQDLSRRDFTAALRRLSQRGLNARTLAR 80 Query: 76 RLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--IDINDPLAV 133 +LS+ R + WLV + L +P + PK P +PK + + +NR+LD +D DPLAV Sbjct: 81 KLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAV 140 Query: 134 RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWL 193 RD A+ E+MYG+GLR+SE+ GL+ + L+ V V GKG K+R++P+ +V ++++L Sbjct: 141 RDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQVPLTGKSVEALKNYL 200 Query: 194 DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLES 253 LR S+ ALF + G R+S R +QKR A+W + G HV PH +RHS+A H+L++ Sbjct: 201 PLRQT-ASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQA 259 Query: 254 SGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 S D+R VQELLGH++LSTTQIYT LDF H+A +YD AHPRAKR Sbjct: 260 SRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 183/302 (60%), Gaps = 11/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT+ + +L ++ +++ S TL Y+ LE NFA ++ + ++R F Sbjct: 1 MTNTQFYITNFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAKVEP----EKVEPIVIRGFI 56 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KG ++A +LS LRSFF +L S+ +K NPA+ VS+ K R LPK + VDD Sbjct: 57 SEQILKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAF 116 Query: 121 RLLDIDINDPLAV-RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +L++ D V RD+A+LE+ Y +G+R+SEL GL+++ LDL+ G + V GKG KER + Sbjct: 117 KLVEAPSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIV 176 Query: 180 PIGRNAVAWIEHWLDLRDLF------GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+G+ A ++ +L +R + ++ LF++ G+RIS R V++ ++ G+ Sbjct: 177 PVGQKAKEALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGV 236 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + PH LRH+FA+H+L DLR +QELLGHA+LSTTQIYTH+D +HL VYD +HP Sbjct: 237 LEKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPL 296 Query: 294 AK 295 +K Sbjct: 297 SK 298 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/292 (41%), Positives = 181/292 (61%), Gaps = 11/292 (3%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L+YL VE+Q SP T+ Y R L +A+++ W+ C +R++ + + Sbjct: 12 FLQYLEVEKQASPHTVEVYARALRQFRAWAADS-FPGWENCTPDQMRDWLFQELKDEAAT 70 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD------ 124 +S+ LR +ALRSF+ +++ ++ L+ NP GVS P+ + LP + ++ M LL+ Sbjct: 71 SSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTA 130 Query: 125 IDINDP--LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + N P L RD A+LE+ Y G+RLSELVGLD+ +D V VMGKG KER LP+G Sbjct: 131 VPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERILPVG 190 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A+A +E ++ + L ++ LF+S++G R+SAR+VQ ++ + + PHK+ Sbjct: 191 TPALAALETYVSMACL--PKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPHKI 248 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RH+FATH+LE+ DLR VQELLGHA+LSTTQIYTH+ +A VY AHPRA Sbjct: 249 RHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA 300 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 170/294 (57%), Gaps = 3/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R++ YL VER + T Y R L+ ++ F ++ W + F + Sbjct: 1 MQKQINRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTM 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R + + ++ LS++R F +LV+Q L+ N A+G+ +PK + LPK +D + + ++L Sbjct: 61 RHQNISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML 120 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + +RD AM+EV+Y GLR+SELVGLDI+ +D G + VMGKGSK R P+G Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 +A I +L + ALF++ +RIS R VQ + G+ +VHPH LR Sbjct: 181 SAQKSINRYLQKT---SHTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLR 237 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H+ ATH L+SS DLR VQE LGH ++ +TQ+YTHLDF L+ VYD HPRAK+ Sbjct: 238 HAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRAKKS 291 >UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1F3_9PROT Length = 298 Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/295 (44%), Positives = 172/295 (58%), Gaps = 5/295 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D T V YL+ L+ R SP T+ Y+R L A F G QQ V+++ V Sbjct: 5 DFRTAVSAYLQELAEVRLASPHTIAAYRRDLGA---FGEHCGNIGLQQITRLQVQDWLVV 61 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 KGL AA+LA RLSAL D V AN A GV PK LP+ + + L Sbjct: 62 GHAKGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAAL 121 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + RD A+L VMYGAGLR+SE VGLD+ +DL S E+ V+GKGSK+R +P+ Sbjct: 122 MQ-PTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLP 180 Query: 183 RNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + WLD R L D+ A+FL++ G+R++AR+VQ+ ++ G + V PH+ Sbjct: 181 TTAADLLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHR 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L DLR +QELLGHA+L+TT+ YTHLD L VYD +HPRA R Sbjct: 241 LRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRAGR 295 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 178/297 (59%), Gaps = 14/297 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA----------SENGLQSWQQCDVTMVR 57 V ++L+ LS E+ SP T+ Y L A + F E L+ + + VR Sbjct: 3 VTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPVR 62 Query: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 F + +K + +++ RLSAL+SFF++LV +++ NPA+GVSAPK PR +P+ + VD Sbjct: 63 GFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVD 122 Query: 118 DMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ LLD I + R+RA+ E+ Y G+R+SEL L++ +D ES V V GKG++E Sbjct: 123 ELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNRE 182 Query: 177 RRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 R +P+G A+ ++ D R E ALFL++ R S ++++ + GL Sbjct: 183 RLVPVGDRALKAVD---DYRTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVP 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH LRHSFATHML++ DLRG+QE+LGHA+LS+TQIYTH+ + L VYD AHPR Sbjct: 240 VSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHPR 296 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 173/293 (59%), Gaps = 7/293 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 ER+LRYL VER SP T+LNY+ L A F S G +W + + +R++ + R+ Sbjct: 10 ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQLHREEK 69 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DI 127 ++A R+S+LRSF+ +L+ + NP V PK + LP ++ +MN LL++ D+ Sbjct: 70 ARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDL 129 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + L RDRA+LE +Y G R+SELVGL + LDL + ++GKG KER +P+G + Sbjct: 130 STELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLGHPCIR 189 Query: 188 WIEHWLD------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + +L + D +F++ G ++AR+V++ + + HV PH Sbjct: 190 AMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQKHVSPHT 249 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +RH+FATH+L+ DLR VQELLGHA+LSTTQIYTH+ +ASVY HPRA Sbjct: 250 IRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 173/288 (60%), Gaps = 4/288 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++RYL Y+ +R SP TL Y+ L ++F G +R + ++K Sbjct: 14 IDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFLKKKN 73 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 ++A +L+++RS + +L L+ NP + + PK + LP + V+D LL+ D Sbjct: 74 PSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILLNQPD 133 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + +RD+A++E +Y G+R+SELVG++I +D SG V V GKGSKER LP+G +A+ Sbjct: 134 TCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVGNHAL 193 Query: 187 AWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 I+ +L+ R ++++ALFL+K R++ R+V + ++ K ++ V PH RHSF Sbjct: 194 NAIQLYLEKRK---ADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPHTFRHSF 250 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ATH+L++ DLR VQE LGH++LSTTQIYTH+ + L VYD HPRA Sbjct: 251 ATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 173/297 (58%), Gaps = 12/297 (4%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCD-------VTMVRNFAV 61 E ++ ++ R SP T +Y R LE + +E + + Q D VT++R+ + Sbjct: 20 EEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVTLLRSGKI 79 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R + +S + LS LRSF+ +L+ +K NP +G+ APK R +P+ + D M Sbjct: 80 T--RCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTFDQMMT 137 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L D D+NDP A+R+RA+LE MY GLR+SE+ L + LDL + V GKG K+R +P Sbjct: 138 LFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDKQRIVP 197 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + + +L D R L+ E+ +F+S+ G I+ R VQ A+ G GLN +H Sbjct: 198 FYKRLRTLLTRYLRDSRALYLKEEHGFVFVSQRGAPITPRAVQLILAQAGQDAGLNQPLH 257 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHSFATH+L++ DLR VQELLGH++LSTTQIYTH+ L DAAHP +K Sbjct: 258 PHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHPHSK 314 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 114/296 (38%), Positives = 176/296 (59%), Gaps = 7/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L ++ YLRY +ER LS T+ Y++ LE + F + G+ SW + + V F R Sbjct: 6 LQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWP-TEASDVDAFLARQ 64 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +S++ +S++R F+ WL QN K NP + PK R LP ++ ++N LL Sbjct: 65 YDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEINDLL 124 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 DI L +RDRA+LE +Y G+R+SEL+ L+++ L + G V V+GKGSKER +PI Sbjct: 125 AQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIPIS 184 Query: 183 RNAVAWIEHWL-DLRDLF----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A+ WI+ + ++RD G D+ +FL+ K+++ + + + ++ G+ V Sbjct: 185 SVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGITKDV 244 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRH+FATH+LE+ DLR VQE+LGH+++STTQIYT+L +H+ VY HPR Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPR 300 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 182/300 (60%), Gaps = 11/300 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ---SWQQCDVTMVRNFAVRSR 64 ++ +L L+ ER+ SP T L Y + L ++ +E+GLQ S + DV V N A+R Sbjct: 15 IDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRGY 74 Query: 65 ----RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 K +++A +LS+LRSF+ +L + + NPA+ V PK + + ++ VD+ Sbjct: 75 LGFLHKKNEKSTMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDEAF 134 Query: 121 RLLDIDINDPLA-VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LLD ++D LA RDRAM E +Y G+R+SEL GL++ ++ + V+GKG KER + Sbjct: 135 ALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKERIV 194 Query: 180 PIGRNAVAWIEHWLDLRDLFGSED---DALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A+ I+ + D + G ++ +A+FL+K G R++ R++++ + GLN Sbjct: 195 PVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLNRP 254 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 + PH LRH+FATHML++ DLR VQELLGHA++STT YTH+ L + YD AHPR ++ Sbjct: 255 LSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPRGEK 314 >UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV23_9GAMM Length = 345 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 184/305 (60%), Gaps = 14/305 (4%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVT--MVRNF 59 TD V R+L LS +R S T+ +Y++ L+ + + E Q + C +T + +F Sbjct: 45 TDDQALVNRWLAELSNKR-YSAATIKSYRQALQPFLAYCYE---QHTELCHITRQQLSDF 100 Query: 60 AVRSRR-KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 +R + +S L+ LR + WL+ Q + NP + +APR LP +D+D Sbjct: 101 LIRRLDVDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDV 160 Query: 119 MNRLLDIDINDP-----LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 +++LLD + L +RD+AMLE++YG+GLR+ ELVGL++ +D + V+GKG Sbjct: 161 LSQLLDQAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKG 220 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFGSEDD-ALFLS-KLGKRISARNVQKRFAEWGIKQ 231 K R +PIG A + ++L R L+ E D A+F+S + G RIS R VQ R + Sbjct: 221 GKTRIVPIGEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRA 280 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 G+ ++PH LRH FA+H+L SGDLRGVQELLGH+++STTQIYTHLDF HL+ VYD AH Sbjct: 281 GVAQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAH 340 Query: 292 PRAKR 296 PR++R Sbjct: 341 PRSRR 345 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 119/297 (40%), Positives = 176/297 (59%), Gaps = 8/297 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW--QQCDVTMVRNFAVRSRR 65 +E +L YL ERQ SP T+ Y+ +E F + Q D+ MVR + + Sbjct: 10 LEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYLGWLNQ 69 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 G +S+ +L+ALR+F+ +L+ +++++P +S P+ + LP + +M +LL I Sbjct: 70 LGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLLSI 129 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 PL +RDRA+LE +Y +G+R++ELVG+D LDL +G V+GKG +ER +P+GR A Sbjct: 130 PATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLGRYA 189 Query: 186 VAWIEHWLD-LRDLFGS-----EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 V +E++L R + E ALFL+ LG R++ R V++R + + K L V P Sbjct: 190 VKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALRRGVSP 249 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 H +RH+FATH+LE DLR VQELLGH L+TTQIYTH+ L VY HPRA R Sbjct: 250 HTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASR 306 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 172/281 (61%), Gaps = 5/281 (1%) Query: 21 LSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSAL 80 LS T+++YQR L F E ++ W++ D +++ F ++ G +S + +S L Sbjct: 17 LSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDLKQDGYATSSTSRMISCL 76 Query: 81 RSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAML 139 + FF +L + ++ NP + + PK + LPK + VD++ ++L+ D + L +RD+AML Sbjct: 77 KKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCDTSTVLGLRDKAML 136 Query: 140 EVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF 199 E++Y G+R+SEL+ L + L LE G + +GKG+K+R +PIG+ A W++H+L + Sbjct: 137 ELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAATNWVQHYLTYARVV 196 Query: 200 GSED----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSG 255 ++ + LFL+ G + + K + + G++ V PH LRHSFATH+LE+ Sbjct: 197 LEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHTLRHSFATHILEAGA 256 Query: 256 DLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 DLR VQELLGH+++STTQIYTHL + + +Y AHPRAK+ Sbjct: 257 DLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRAKK 297 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 181/299 (60%), Gaps = 10/299 (3%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-----WQQCDVTMVRNFAV 61 D++ +L YL VE+ S T Y+ L ++ FA + +S W+ + + + Sbjct: 4 DIQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYML 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + + ++ +++A +SFF+++V++ +LK NP + +S PK + LP I + + Sbjct: 64 DLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRA 123 Query: 122 LLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ + A RD+AMLE++Y +G+R++ELV L++ +DL+ G V GKG KER + Sbjct: 124 LLNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKERMI 183 Query: 180 PIGRNAVAWIEHWL-DLR-DLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 PI A I+ +L ++R +L +E + ALFL++ G R++ + + + + + GL++ Sbjct: 184 PIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDV 243 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 V PH LRHSFATHML DLR VQELLGHAN+STTQIYTHL +H+ Y+ AHPRAK Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPRAK 302 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 180/308 (58%), Gaps = 16/308 (5%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMV--RNFAV 61 +H + ++LRYL VER + +T +Y+ L ++ ++ ++ + + ++T + R + Sbjct: 1 MHAAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 G S+A RL++LR+F+ + + +NPAK + P+ R LP + D++ + Sbjct: 61 ALHEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGK 120 Query: 122 LLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL+ +DP +RDRAMLE +Y AGLR+SELVG++ + LDL+ G V + GKGSKER P Sbjct: 121 LLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAP 180 Query: 181 IGRNAVAWIEHWLDLRDLF-------------GSEDDALFLSKLGKRISARNVQKRFAEW 227 +G A+ I+ WL R L +F +K GKR++ R+V + ++ Sbjct: 181 LGSFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKY 240 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 GL+ PH LRH+FATH+L+ D+R VQELLGH +L TTQIYTH+ L +VY Sbjct: 241 LKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVY 300 Query: 288 DAAHPRAK 295 + AHPRA+ Sbjct: 301 ERAHPRAR 308 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 177/299 (59%), Gaps = 18/299 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL-------QSWQQCDVTMVRNFA 60 +E +L YL E+ +S T+ +Y+R LE INF + G+ + WQ+ V + + + Sbjct: 5 LEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVALYKKYK 64 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 ++S +A ++S++RSF +L+ + + N + + PK P +LP+ +D ++ Sbjct: 65 IKS---------IARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIE 115 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L I D PL +R+ A+LE Y G+R+SELV L+I+++DLE V GKG KER + Sbjct: 116 SFLKIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIV 175 Query: 180 PIGRNAVAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 P+G AV ++ +L +R LF +D +ALFL+K G+RI+ + V + GL V Sbjct: 176 PLGDYAVESLKRYLSVRHLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVS 235 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH RHSFATH+L + D+R VQELLGH++++TTQIYTH+ L VY AHP +R Sbjct: 236 PHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRN 294 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 110/281 (39%), Positives = 171/281 (60%), Gaps = 10/281 (3%) Query: 25 TLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF-AVRSRRKGLGAASLALRLSALRSF 83 T+ Y+R +++ + F + + + + +R + A R + L ++S+ L+++R F Sbjct: 28 TITAYERDVKSFLEFCELKKV-DLRNVEASDLREYLAQRVEQDQLSSSSMQRHLTSIRQF 86 Query: 84 FDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-----IDINDPLAVRDRAM 138 W L+ NP + PR LP ID++ +N++LD ++ L +RD+AM Sbjct: 87 MKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKPVDQQLWLRDKAM 146 Query: 139 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 198 LE++Y +GLRL+EL GL IK +D V + GKG+K R +P G+ A + +WL + ++ Sbjct: 147 LELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAKESLLNWLKIYNI 206 Query: 199 FGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSG 255 + D ++F+S+ G ++ R ++KR + G+N +HPH LRH FA+HML SSG Sbjct: 207 WKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLRHCFASHMLSSSG 266 Query: 256 DLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 DLR VQE+LGH+NLSTTQIYTH+DF HLA VYD AHPRA + Sbjct: 267 DLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 170/294 (57%), Gaps = 5/294 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFAS--ENGLQSWQQCDVTMVRNFAVRSRR 65 V +L YL +R SP T+ Y LE F G + + + + R Sbjct: 12 VALFLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLHR 71 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 +GL +S+ +LSALR+F+ +L + + +P ++ PK P+ PK ++VD L++ Sbjct: 72 RGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVET 131 Query: 126 DIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 +I DP +RD A+LEV+YG+GLR+SE +GLD H+DL+ V V+GKG KER +P+ Sbjct: 132 EITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTGP 191 Query: 185 AVAWIEHWLDLRDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A + +++ R F + + A+FL K G R+S + + E ++ G + PH L Sbjct: 192 AAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPHTL 251 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFA+HML++ DLR VQELLGH+ +STTQ YTHLD + VYDAAHP A + Sbjct: 252 RHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAAK 305 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 110/280 (39%), Positives = 164/280 (58%), Gaps = 8/280 (2%) Query: 25 TLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFF 84 T+ YQR L NF L + + A R + L ++SL L+++R F Sbjct: 31 TIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEKDQLSSSSLQRHLTSIRQFM 90 Query: 85 DWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-----IDINDPLAVRDRAML 139 W L+ NP++ + PR LP +D++ ++++LD I L +RD+A+L Sbjct: 91 KWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAPPDKPIEQQLWLRDKAIL 150 Query: 140 EVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF 199 E++Y +GLRL+EL GL IK +D + + GKG+K R +P G+ A + WL + ++ Sbjct: 151 ELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFGQKAKDSLIEWLKIYRIW 210 Query: 200 GSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGD 256 E D A+F+S+ G R++ R ++ R + G+N +HPH LRH FA+HML +SGD Sbjct: 211 QGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDLHPHLLRHCFASHMLSASGD 270 Query: 257 LRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LR VQE+LGH+NLSTTQIYTH+DF LA VYD HPRA++ Sbjct: 271 LRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRAQK 310 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 114/296 (38%), Positives = 174/296 (58%), Gaps = 9/296 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE+++ YL R LS TL +YQ L + + S + Q D +R + ++ Sbjct: 11 VEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENVD-LTQVDHKNLRLYLAYLKQAQ 69 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 A +L LSALR F+ W+ + + +PA +S P+APR+LP + D+NRLL+ D Sbjct: 70 YSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCD 129 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 ++ +RDRA LE +Y G R+SE+ L ++ +DL++G V + GKGSKER +P+ +A+ Sbjct: 130 VSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAI 189 Query: 187 AWIEHWLD-------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 W++ +L L+D G ALF+S G +SA +++K F+ + GL++ + P Sbjct: 190 EWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSLSP 249 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H +RH++AT +L DLR VQELLGH +LSTTQ+YTHL L AAHPR+K Sbjct: 250 HAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRSK 305 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 110/307 (35%), Positives = 180/307 (58%), Gaps = 19/307 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-------GLQSWQQCDVTMVRNFA 60 ++ + RY+ +ER LS T NY L + EN ++WQ D MVR F Sbjct: 5 IKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVRAFL 64 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+ + ++A +L++LR+FF +L + +++ NP + VS P+ +++P + VD++ Sbjct: 65 GALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVDEIF 124 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL++ D +RDRA+LE+ Y +G+R+SEL G++ + +D G + + GKG KER + Sbjct: 125 VLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKKERIV 184 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDA---------LFLSKLGKRISARNVQKRFAEWGIK 230 PIG+ A ++ ++ + GSE LF+++ R+SAR+V + +++ Sbjct: 185 PIGQPASEAVQRYMMKKP--GSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVSM 242 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 GL + PH LRHSFATH++++ DLR +QELLGH +LSTTQ YT + L +VYD A Sbjct: 243 SGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRA 302 Query: 291 HPRAKRG 297 HP+A+ G Sbjct: 303 HPKARGG 309 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 171/296 (57%), Gaps = 3/296 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 DL T V+ YL +L VER L+P+TL Y L ++ A +G+ + + D +++ + V Sbjct: 28 VDLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLV 87 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + G+ A+S A LSA+R F +L+ + ++ +P V P+ R LPK + D++ Sbjct: 88 ALGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIAL 147 Query: 122 LLDIDINDPL-AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L++ +RDRAML VMY AGLR+SE+V L + +D G V +GKG K R +P Sbjct: 148 LIEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVP 207 Query: 181 IGRNAVAWIEHWLDLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +G A+A I+ +L+LR + LFLS G ++ + V K + G+ Sbjct: 208 LGEPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSS 267 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PHKLRHSFATH+LE DLR VQ LLGHAN+ TT+IYTHL H+ + Y AHPRA Sbjct: 268 PHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 167/293 (56%), Gaps = 6/293 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D YL YLSVER S +T+ +Y L I+F E G+ V + RR+ Sbjct: 14 DRNDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRR 73 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 G +S+ LSAL+ F +LV + K NPA VS PK P LP + V ++N LLD Sbjct: 74 GYADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQP 133 Query: 127 IND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D PL +RD+A LE++YG GLR SEL+ LD+ + G + VMGKGS+ER +PIG +A Sbjct: 134 FKDGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSA 193 Query: 186 ----VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + ++E+ D A+ L+ G R+S + + G G + +HPH Sbjct: 194 QRVLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIGRPD-LHPHT 252 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATHMLE DLR +QE+LGH+++STTQIY H+D H+ Y AAHPRA Sbjct: 253 LRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRA 305 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 118/292 (40%), Positives = 182/292 (62%), Gaps = 8/292 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVRSRRKGLG 69 +L +L E+ LS T+ NY + L NF +E L W + +R+F + K Sbjct: 8 FLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLKDKNYE 67 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND 129 ++ A +LSA+RS F +L + ++++N + ++ PK R LP+ + ++++ L++ +D Sbjct: 68 KSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLINAPGDD 127 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 P +RD+A+LEV Y +G+RL EL GLD+++LDL++G + V GKG+ ER P+G A+A I Sbjct: 128 PFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSFALAAI 187 Query: 190 EHWLD------LRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 E +L L+ E+ DALFL+K G RIS R++++R ++ + + V PH L Sbjct: 188 EDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEHRVSPHSL 247 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE DLR VQELLGH N+STTQIYTH++ + VY+ HPRA Sbjct: 248 RHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 173/308 (56%), Gaps = 14/308 (4%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENG-LQSWQQCD------ 52 M +L V R+L +L+ +R SP T+ Y+ L +F SE G S + D Sbjct: 1 MDELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRL 60 Query: 53 VTMVRNFAV-RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 N + + +R G +S+ +L+A+R+FF WLV +L+ NPA+ ++ PK + LP Sbjct: 61 YLASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLP 120 Query: 112 KNIDVDDMNRLLD----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 ++++D L++ P RD A+LE++Y +GLR+SEL GL + LD +G V Sbjct: 121 FHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMV 180 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEW 227 V GKG KER +P+G A+ +E +L R ++D LFL G RI+ R V + W Sbjct: 181 RVQGKGGKERIVPVGSAALEALEQYLAGRGQL-ADDAPLFLGCRGARINRRTVAQLVKRW 239 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 + PH LRH+FATHMLE DLR +QELLGH++LSTTQ YTH+ L VY Sbjct: 240 ASGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLEVY 299 Query: 288 DAAHPRAK 295 D AHPRA+ Sbjct: 300 DKAHPRAR 307 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 112/278 (40%), Positives = 172/278 (61%), Gaps = 9/278 (3%) Query: 25 TLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSA 79 TL+ Y + L FA+ E + Q D+ +VR+F +GL S+A +LSA Sbjct: 23 TLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEMTDRGLERKSMARKLSA 82 Query: 80 LRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDPLAVRDRAM 138 LR+FF +L + L+ NP + ++ PK R LP + +++++RL+ D L RD+ + Sbjct: 83 LRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLIRTPDCATLLGARDQVI 142 Query: 139 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 198 LE++YG+GLR+SEL L+ + +D S + V GKG+KER +P+ A+ +L++R+ Sbjct: 143 LELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLTNYALEAARQYLEMRE- 201 Query: 199 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLR 258 + +AL L+ G R+S R++++ ++ GL+ H+HPH LRHSFATH+L+ DLR Sbjct: 202 --DKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHSFATHLLDGGADLR 259 Query: 259 GVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 VQELLGHA LS+TQIYTHL + L VY+ HPRAK+ Sbjct: 260 SVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 176/315 (55%), Gaps = 25/315 (7%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIIN-FASENGLQSWQQCDVTM--VRN 58 T L ++ +L +L ER LSP TL Y+R L + A+ +G+ W+ ++T +R Sbjct: 13 TPLPVEIGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRG 72 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + R+GL S+A +LSA+RSF+ W+ + NPA+ V +PK PR LP +D Sbjct: 73 YMAHLTRRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQ 132 Query: 119 MNRLL--------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 L+ ++ D VR+ AMLE+ Y +GLRLSEL G+D+ LDL S +V V Sbjct: 133 AETLMQHAATRAQSLEFTD---VRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVR 189 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDD-----------ALFLSKLGKRISARN 219 GKG KER +P+G +A + ++L RD ++ A+FLS+ G RISAR Sbjct: 190 GKGRKERIVPLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARA 249 Query: 220 VQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLD 279 VQ + H LRH+FATH++++ DLR VQELLGHA++STTQIYTH Sbjct: 250 VQHAMVTLMSAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTS 309 Query: 280 FQHLASVYDAAHPRA 294 L VY AHPRA Sbjct: 310 VDRLKKVYRQAHPRA 324 >UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54C0A Length = 213 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/204 (49%), Positives = 138/204 (67%), Gaps = 1/204 (0%) Query: 93 LKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSEL 152 L ++P + V +PK P LPK + +D+ +LL RD+A LE++Y +GLR+SE Sbjct: 4 LDSDPFESVQSPKIPETLPKALTPEDVEKLLSFQPKSKSDFRDKAFLELLYSSGLRVSEA 63 Query: 153 VGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLG 212 VG+++ + E V V+GKG KER LP+G+ A IE WL R+ + +ALF++K G Sbjct: 64 VGVNLSSFESELSFVKVLGKGKKERMLPVGKFAKEAIEKWLVEREHIAKDTNALFINKYG 123 Query: 213 KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTT 272 KRIS R +Q+R I QGL+ V PH LRHSFATH+LESSGDLR +QE+LGH++LSTT Sbjct: 124 KRISIRAMQERIYNISIAQGLSP-VSPHMLRHSFATHILESSGDLRSIQEMLGHSSLSTT 182 Query: 273 QIYTHLDFQHLASVYDAAHPRAKR 296 QIYT L+FQ LA +YD +HP K+ Sbjct: 183 QIYTKLNFQQLAKIYDRSHPHGKK 206 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 185/305 (60%), Gaps = 16/305 (5%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT L +E++ +L E+ SP T+ NY L +++F E L + + + A Sbjct: 1 MTSLSPLLEKFRAHLEDEKGSSPHTVRNY---LIDLVDF--ERYLVERMKLSLLSGTHAA 55 Query: 61 VRSRRKGLGA----ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 +R L AS A RL++++SF+ +LV Q L A+PAK V +PK P+ LPK + V Sbjct: 56 IRGYLGTLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPV 115 Query: 117 DDMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 +++ +LD+ D+ L +RDRA+LE++YG GLR+SEL GLD+ +D V VMGKGSK Sbjct: 116 EEVFAILDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSK 175 Query: 176 ERRLPIGRNAVAWIEHWLDLR-DLFGS-----EDDALFLSKLGKRISARNVQKRFAEWGI 229 ER +P+ ++ +E +L R +L + +A+FL+ G R++ R++ + + + Sbjct: 176 ERLVPVNAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVL 235 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 K L V PH +RHSFATH+L D+R +QELLGH++LSTTQ YT + ++ L VYD+ Sbjct: 236 KCALTRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDS 295 Query: 290 AHPRA 294 AHPRA Sbjct: 296 AHPRA 300 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/332 (39%), Positives = 184/332 (55%), Gaps = 48/332 (14%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-------------------- 47 ++ +LR+L VE+ S T+ +YQR L + A + Sbjct: 9 IDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPLP 68 Query: 48 ---------WQQCDVTMVRNF--AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKAN 96 Q D T VR F ++ R K ++S+A +LSALRSFF +L + + Sbjct: 69 AEDPAAELDVAQLDATRVRAFVYSLHGRNK---SSSVARKLSALRSFFRFLRKNGIINDD 125 Query: 97 PAKGVSAPKAPRHLPKNIDVDDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGL 155 PA ++APK +LP + VD++ LL++ D A RDRA+LE++Y GLR+SEL GL Sbjct: 126 PAAAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGL 185 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD-----LRDLFGSED------- 203 D+ LDL G V V+GKG+KER +P+G AVA IE +L LR G + Sbjct: 186 DLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARG 245 Query: 204 -DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQE 262 D L ++ G R+++R++++ + + G+ V PH LRHSFATH+LE DLR VQE Sbjct: 246 ADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQE 305 Query: 263 LLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LLGHA+LSTTQ YTHL+ HL +VYD AHP A Sbjct: 306 LLGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 173/294 (58%), Gaps = 5/294 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +++ +L YL +ER SP T+ Y+R + F S + D+ + F V RK Sbjct: 4 ELKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVDL---KQFLVDILRK 60 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 + A ++ ALRSF+ +L +K NPA + PK P+ LP+ + VD++ ++++ Sbjct: 61 NRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQ 120 Query: 127 IND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 N P +R+RA+LE+ YGAGLR+ E+ GL + LDL G V V GKG ++R +P+G+ A Sbjct: 121 ENSTPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYA 180 Query: 186 VAWIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 + ++ +L+ R F + + LFL++ G ++ R ++ ++ K GLN + PH RH Sbjct: 181 LDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHTFRH 240 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 S+ATH+LE D+R VQELLGH LSTT+IYTHL + L VY HPR++ K Sbjct: 241 SYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRSREEK 294 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/292 (40%), Positives = 176/292 (60%), Gaps = 9/292 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNFAVRSRRKG 67 E++L YL ER SP T+L YQ+ L A F ENG W Q + + + + +K Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQK- 63 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L +++L+ +LS+L+SF+ +L + +KA+P + + + LP+ D++ +++ + Sbjct: 64 LASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIR-SL 122 Query: 128 ND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 ND PL VR+RA++ + Y G+RLSEL L IK LDLE+G + V GKG+K+R + + + Sbjct: 123 NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQES 182 Query: 186 VAWIEHWLDLR--DLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 ++E +L L +E D A+FL+KLG+ IS+R + K + K GL HPH+ Sbjct: 183 KKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHE 242 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 LRHSFAT ML + DLR VQELLGH +LSTTQIYTH+ QHL Y PR Sbjct: 243 LRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAZ0_SORC5 Length = 358 Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 132/344 (38%), Positives = 182/344 (52%), Gaps = 48/344 (13%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL---------------- 45 T L + R+L YL+ ER+ S T+ Y+R LE + FA E Sbjct: 13 TTLEQAIARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHRPARARGKAPA 72 Query: 46 --------------QSWQQCDVTMVRNFAVRSRRKGLGA-------ASLALRLSALRSFF 84 ++ + T V V R LG+ AS+A ++ A R+ Sbjct: 73 TGKTPATGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSLARTHAPASIARKVGAARALL 132 Query: 85 DWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPL-AVRDRAMLEVMY 143 +L + E+ N A ++ PK R LP +DVD +++I + +RDRAMLE +Y Sbjct: 133 RYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGLRDRAMLETLY 192 Query: 144 GAGLRLSELVGLDIKHLDLESGE---VWVMGKGSKERRLPIGRNAVAWIEHWLDLRD--- 197 GAGLR+SEL GLD+ H+D + V V+GKG KER +P+G +A+A IE +L+ RD Sbjct: 193 GAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIERYLERRDELA 252 Query: 198 --LFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESS 254 G+ D ALFLS+ G RI R VQ +G +HPH LRH+ ATH+L+ Sbjct: 253 DPTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAGRADLHPHALRHTCATHLLDGG 312 Query: 255 GDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA-KRG 297 DLR +Q+LLGHA+L+TTQ YTH+ HL VYDAAHP A KRG Sbjct: 313 ADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMARKRG 356 >UniRef50_D0L0D4 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0D4_HALNC Length = 329 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 173/300 (57%), Gaps = 11/300 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T LH E +L+ L+P T Y + + + + + Q D +R + Sbjct: 11 TALHAAFECARAWLTESATLAPKTQAAYLGDWQQLQSHLHDQDVIKPDQIDDRRLRGYLA 70 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVS--QNELKANPAK--GVSAPKAPRHLPKNIDVD 117 R GL S+A + SA R WL+ Q A PA + +PKA + LP ++ Sbjct: 71 HCRESGLDNRSIARKSSATR----WLLRYWQKIHIACPASPDALKSPKAAKKLPDAPAIE 126 Query: 118 DMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 MN+LLD + D L +RDR M E++Y +GLR++ELV LD+ +D G V GK K Sbjct: 127 TMNQLLDQPMVEDELLIRDRCMFELIYSSGLRVAELVRLDVHDIDRSEGIARVTGKREKT 186 Query: 177 RRLPIGRNAVAWIEHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 R +P+G A+ + WL +R L + + ALFL++ G+R++ R+VQ R + L Sbjct: 187 RLVPVGGKALDRVALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQMRLNRLAQQTHLG 246 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH+LRH+FATH+LESSGDLR VQE+LGH +LSTTQIYTHLDFQ LA VY++AHPRA Sbjct: 247 QTLHPHQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQRLAQVYESAHPRA 306 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 203 bits (516), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 166/292 (56%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE YL++L VER LSP TL Y L +++ S G++ Q + F G Sbjct: 11 VEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLGFLRSLAEAG 70 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID- 126 L A S A R A+R F WL S+ ++ +P +G++ PKA LP+ + +++ RL+ Sbjct: 71 LSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVRLIAAPG 130 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 ++ PL +RD A+LE MY G R+SE L++ L L+ G V + GKGSK+R +P+G A+ Sbjct: 131 VDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQRMVPLGDCAL 190 Query: 187 ----AWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 AW+E + +F++K G R+S + R + + G+ + PHKL Sbjct: 191 VALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGITRDISPHKL 250 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH++E DLR VQ LLGHA++STTQ+YTHL H+ YD HPRA Sbjct: 251 RHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 202 bits (515), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 11/301 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNF 59 M DL +E +L +L VER LS T+ Y+R L +++ GL + + + F Sbjct: 1 MNDL---IEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGF 57 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 +R++G A S+A +++LRSFF +L+ ++ +P + PK + LPK +++DD+ Sbjct: 58 MAFARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDV 117 Query: 120 NRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 +LL D + PL +RD+AM+E++Y GLR++ELV L + L L G + +GKG KER Sbjct: 118 EKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERI 177 Query: 179 LPIGRNAVAWIEHWLD-----LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 +P+G+ A +E +L+ LR +D +FL+ G+ ++ + K + G+ Sbjct: 178 IPLGKTATTVLEKYLEEARPKLRRP-KYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGI 236 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + PH LRHSFATH+LE+ DLR VQELLGHA++STTQIYTH+ L VY HPR Sbjct: 237 EKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPR 296 Query: 294 A 294 A Sbjct: 297 A 297 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 202 bits (515), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 180/297 (60%), Gaps = 6/297 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRN 58 MTD + ++ Y+ VE+ LS T+L Y+ + INFA + L++++ D+T + Sbjct: 1 MTDCKEALNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDIT---D 57 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 F + +GL S+ + +LR F+ +L S++ K NP ++ P P +LP + D+ Sbjct: 58 FLWEMKTEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDE 117 Query: 119 MNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 ++ LL+ I+ +D + +R++AMLE++Y AGLR+SEL+ L ++LE + ++GKGSKER Sbjct: 118 VDLLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKER 177 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 +P G A +I +L R + +D +F+S+LGK++S ++ G+N ++ Sbjct: 178 LVPFGNKAKFFISIYLKKRRPCLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNI 237 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFA+H+L+ D+R VQE+LGHA+++TTQIYTHLD + + HPR Sbjct: 238 TPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPRG 294 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 179/301 (59%), Gaps = 6/301 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ +L Y+ VER+ SP T+ Y+R ++ ++ +E + SW V VR + Sbjct: 2 MKNEMQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVL 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+ +S++ LS+LRSF+ +LV + +++NP VS K LP+ D++ + + Sbjct: 62 HRENYNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFI 121 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + ID N L R++A++EV+Y G+R+SEL L ++ LDL++ + V+GKGSKER +PIG Sbjct: 122 NSIDGNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIG 181 Query: 183 RNAVAWIEHWLD--LRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A +E +L+ +DL E +F++ LG ++ V+ + + GL + Sbjct: 182 DFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKI 241 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 HPH LRH+FATH+L + D+R VQELLGH +LS+TQIYTH+ + L Y PR+K G Sbjct: 242 HPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRSKAG 301 Query: 298 K 298 K Sbjct: 302 K 302 >UniRef50_B5ENS4 Integrase family protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ENS4_ACIF5 Length = 314 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 179/302 (59%), Gaps = 9/302 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T + +++ L ++SP T+ Y R L A FA + G Q D +R + + Sbjct: 3 IETAIAQFIETLRQGGRVSPATISAYSRDLHAWARFALQRGQTEIAQMDRGSLRAYLLAE 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R +G+ SL +ALR+ + L NP G++ P+A + LP + VD L+ Sbjct: 63 RSRGVSVRSLRRHFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLM 122 Query: 124 DIDINDPLA-------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 I+D A +RD+ +LE++Y + LR+SEL GL++ LD +G V V+GKG KE Sbjct: 123 QPAISDTEAAPQDFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKE 182 Query: 177 RRLPIGRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 R +P+G+ A A + +L R + D+ ALF+++ G+R++ R++Q R + G + L Sbjct: 183 RIVPVGQPAWAALRAYLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLGDAR-LGQ 241 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 +HPH LRHS A+H+L+SSGDLR VQE LGHA + TT IYTH+D+Q LA VYD AHPR++ Sbjct: 242 PLHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSR 301 Query: 296 RG 297 RG Sbjct: 302 RG 303 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/295 (40%), Positives = 169/295 (57%), Gaps = 4/295 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 + R+L+Y+SVER+ S TL YQ+ L A +F +G +Q VR + + Sbjct: 34 IARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNEQA 93 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--I 125 S+ +LS+LRSFF + +SQ ++ NP + V + LP+ ++ +L D Sbjct: 94 YAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDSLY 153 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D A RDR +LEV+Y G+R+SEL L ++ L+LE + V+GKG+KER +P+G +A Sbjct: 154 KREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGDSA 213 Query: 186 VAWIEHWLD-LRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 I +L LR + L L+ G +S R ++ R +Q +N ++PHKLR Sbjct: 214 TQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHKLR 273 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HSFATH+L DLR VQELLGHANLS+TQIYTH+ L S Y AHPRAK+ K Sbjct: 274 HSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRAKQAK 328 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 174/296 (58%), Gaps = 8/296 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQS-WQQCDVTMVRNFAVRSR 64 ++E++ RYL +E+ SP T+ +Y+ +E FA + NG + + ++R + R + Sbjct: 7 EIEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLK 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 ++A R++ALRSF+ +L + + NP K V PK + LP +D ++ LL+ Sbjct: 67 ADDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLE 126 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 + +D L RD A+LE++Y G+R++EL GL +DL S V V GKG+KER +PIGR Sbjct: 127 LPADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRT 186 Query: 185 AVAWIEHWL-DLRDLFGS-----EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A A +E +L D R S + LF++ G ++ R+V++ ++ + V Sbjct: 187 AAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAVAKKVS 246 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH +RH+FATHML + DLR VQE+LGH NLSTTQ+YTH+ + L +VY HPRA Sbjct: 247 PHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/291 (37%), Positives = 168/291 (57%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ YL YL+VE+ S TL Y R L E G++ + V + +RKG Sbjct: 6 IDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKRKG 65 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 L A S+ L+ALR F+ +L+ + +++ NP + K LP + ++M++LL Sbjct: 66 LSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQPG 125 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + A+RD AMLE+MY GLR+SEL+ L ++ + G + V GKG+KER +PIG+ A Sbjct: 126 VRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQVAY 185 Query: 187 AWIEHWLD---LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + + D + + G++ + LFL+K G+ ++ + K ++ +K GL VHPH R Sbjct: 186 EHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHTFR 245 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFA+H+LE DLR VQ +LGHA++STTQIYTH+ +HL ++ HPR Sbjct: 246 HSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPRG 296 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 173/297 (58%), Gaps = 6/297 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L + V +L +LS+E+ S +T+ +Y LE + F G+ + + + ++ Sbjct: 17 LLSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADL 76 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +G AAS+ +SAL+ F +LV + ++PA + P P LP + +D +N LL Sbjct: 77 SGRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLL 136 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + + PL VR+ LE++YG GLR SEL GLD L+ G + ++GKGS+ER +PIG Sbjct: 137 DQEFREGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIG 196 Query: 183 RNAVAWIEHWL-DLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +A + +L D R L S A+ L+ G R+S +++ E G G+ + +H Sbjct: 197 GSAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGIKD-LH 255 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHSFATH+LE DLR +QE+LGH+++STTQIYTH+D H+ Y +AHPRAK Sbjct: 256 PHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRAK 312 >UniRef50_A5EWX9 Site-specific recombinase XerC n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWX9_DICNV Length = 302 Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 168/293 (57%), Gaps = 7/293 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E +L L ER LSP T Y+ L N A +Q ++++ RRK Sbjct: 2 IEAFLHALQYERGLSPQTCTTYRYSL----NQAQRYFHGELEQQKANALQSYLNHQRRKR 57 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKA-PRHLPKNIDVDDMNRLL-DI 125 + +L +ALR++F WL + NPA + PK + LPK + +D++ LL Sbjct: 58 IAPITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRKKTLPKTLSIDEITILLAPP 117 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + +PL +R+ A+ E+ Y AGLRL+EL+ ++ + E+ + GKG +RR+ IG +A Sbjct: 118 NSEEPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGYQRRIFIGTHA 177 Query: 186 VAWIEHWLDLR-DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 + WL++R + E+ ALF+S G+RI R+V+ + + N H+ PH LRH Sbjct: 178 KMALSKWLNVRAQIAAPEEKALFVSNQGRRIHPRSVEYILHRYAQSRLPNRHITPHMLRH 237 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 SFA HML++ GD+R VQ+LLGH +STTQIYT LDFQ L+ VYD AHPRA++ Sbjct: 238 SFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQLSKVYDRAHPRAQKN 290 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 175/296 (59%), Gaps = 5/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVR 62 + +E ++ YL+ E+ L+ + + Y+R L F EN S Q + F Sbjct: 1 MQNSIEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAW 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G +S+A LS+++S++ +L+ + EL NP+ + PK R LP+ + ++++++L Sbjct: 61 QLDQGAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKL 120 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ + PL +RDRAMLE+MYG G+R+SEL+ L ++ L+ +G + MGKG KER +P+ Sbjct: 121 MEQPNPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPV 180 Query: 182 GRNAVAWIEHWLD-LRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + ++ W++ +L +R+ + LFL+ G+ +S + K + K L V Sbjct: 181 NQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQE+LGHA++STTQIYTHL L VY HPR+ Sbjct: 241 PHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 168/294 (57%), Gaps = 8/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSRRKG 67 E + YL VE+ SP+T+ NY + F ++ W Q V +R++ + + Sbjct: 18 EDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRD 77 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 L ++A R+S+LRSF+ +L + +K NP V PK + LP ++ ++N LL + D Sbjct: 78 LSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPD 137 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 L RDRA+LE +Y G R+SELVGL + +DL + ++GKG KER +P+G V Sbjct: 138 CTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCV 197 Query: 187 AWIEHWLD------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +E +L + +F++ G+ +SAR+V++ ++ L HV PH Sbjct: 198 AAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPH 257 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +RH+FATH+L+ DLR VQELLGH +LSTTQIYTH+ + L +VY+ HPRA Sbjct: 258 TIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/281 (42%), Positives = 171/281 (60%), Gaps = 6/281 (2%) Query: 20 QLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSA 79 + SP T+ +Y + LEA + + G+ VR A KG +S+A RLS Sbjct: 19 RFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHASDLLAKGAAKSSVARRLSC 78 Query: 80 LRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAM 138 LR+F + + ++ AK V PK R LP+ + +++ L+D + +D +A+RDRA+ Sbjct: 79 LRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDHVGGDDFVALRDRAL 138 Query: 139 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 198 LE +Y G+R+SE V LDI LDL +G V+GKG +ER + +GR AV + +L LRD Sbjct: 139 LEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVMVGRRAVDALRRYLPLRDR 198 Query: 199 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQ--GLNNHVHPHKLRHSFATHMLESSGD 256 + A+F+++ G R++ R+V +R E I++ GL + +H H LRHSFATHML D Sbjct: 199 M-ARCSAVFINRRGGRLTDRSV-RRVLERRIQEVPGLRS-IHVHGLRHSFATHMLNGGAD 255 Query: 257 LRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 LR VQELLGHA+LS+TQIYTH + LA Y AAHPRA+RG Sbjct: 256 LRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRARRG 296 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/293 (39%), Positives = 170/293 (58%), Gaps = 3/293 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++R+L +L VER L+ TL Y L + F E G + D + V RR+G Sbjct: 28 MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCL-LAEVDEQTLFMHVVDLRRRG 86 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 + +LA L+ LR FF + V + EL+A+PA + PK R+LP + D+M +L D Sbjct: 87 MAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPD 146 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 ++D L RDR MLE+MY AGLR+SEL L D ++G V V GKG+KER +P+ + Sbjct: 147 LSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSC 206 Query: 187 AWIEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 A + +L D R F + A+FL++ GK +S + V K + G++ + PH RHS Sbjct: 207 ALVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHS 266 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 FATH+LE DLR VQ LLGHA++S T+IYTH+ L +++A HPR +R + Sbjct: 267 FATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRRPR 319 >UniRef50_C6NUR2 Tyrosine recombinase xerC n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUR2_9GAMM Length = 317 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 167/289 (57%), Gaps = 15/289 (5%) Query: 23 PITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRS 82 P + Y+ L F +E G+ + +R+F R R +G+ SL R +ALR+ Sbjct: 20 PASASAYRADLHLWQEFLAEQGIDHIESVQAEHLRHFIRRERARGVAIRSLRRRFAALRA 79 Query: 83 FFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND------PLA---- 132 + L Q+ +P++ + PK +H P + VD +LLD + P Sbjct: 80 LYRHLQRQHPQLPDPSRYLRLPKLEQHFPDWLTVDQAQQLLDGPTSSDGGPAQPATAQTH 139 Query: 133 ---VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 RDRAM+E++Y + LR+SELV +D+ HLDL + V GKG KER +P+G+ A+ + Sbjct: 140 FAMTRDRAMMELLYSSALRVSELVAIDLDHLDLAGSWLRVFGKGGKERMVPVGQVALTAL 199 Query: 190 EHWLDLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFAT 248 +L R + + LFL++ G R+S R+VQ+ WG + L +HPH LRHS A+ Sbjct: 200 RTYLPARAAVAAAEVKALFLNQRGGRLSVRSVQRIVDGWG-RDRLGQALHPHTLRHSAAS 258 Query: 249 HMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H+L+SSGDLR VQ+ LGHA ++TT IYTHLD QHLA+VYD+AHPRA R Sbjct: 259 HLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQHLAAVYDSAHPRAHRA 307 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 12/304 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M DL +ER+L+Y+ S T YQR ++ I + E + S++ D +V N+ Sbjct: 1 MEDL---LERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYI 57 Query: 61 VRSRRKG------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNI 114 R KG + ++A +LS+LRSF+ +L + NP PK + +P+ + Sbjct: 58 AFLRDKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFL 117 Query: 115 DVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 D++ L+ D+N +RDR M E+MY GLR+SE V L + +D + + GKG Sbjct: 118 FYDEIEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKG 177 Query: 174 SKERRLPIGRNAVAWIEHWL-DLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQ 231 KER +P A + ++ D+RD++ + D+ ALF+++ GK+++ R VQ + K Sbjct: 178 DKERLVPFYDLAKELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKC 237 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 L+ HVHPH RHSFATH+L++ DLR VQELLGH++LSTTQIY H+ + L + Y+ AH Sbjct: 238 DLHVHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAH 297 Query: 292 PRAK 295 PRAK Sbjct: 298 PRAK 301 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V +L+++ E+ S T+ NY R L + + ++ + Q D +R F KG Sbjct: 16 VSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFVAMLFDKG 75 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 L +++ +++ L+SFF ++ +N NPA+ + PK + K ++D + LLD D Sbjct: 76 LAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLDAPD 135 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + P +RD + E+MYG G+R+SELVGL++ +D + V GKG KER +PI + Sbjct: 136 KDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIVPIADMHI 195 Query: 187 AWIEHWLDLR----DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 I +LD++ + + +++A+F++K G R++ R+V++ ++ GL PH Sbjct: 196 EMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPMDFSPHSF 255 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHS+ATH+LE DLR +Q LLGH +L+TTQ YTHL+ L VYDA HP A Sbjct: 256 RHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 196 bits (498), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 178/326 (54%), Gaps = 36/326 (11%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINF-ASENGLQSWQQ-----CDVTMVRN 58 H+ + +L+YL+ ER +S T+ Y++ L + F E L S Q + + +R Sbjct: 11 HSQLTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRL 70 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 F G + S+ +L++++SFF +LV N L A+PA V+ PKA + LP ++ Sbjct: 71 FLGELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQ 130 Query: 119 MNRLLDIDIN-----------------------DPLAVRDRAMLEVMYGAGLRLSELVGL 155 L D ++ D RDRA+LE+ Y GLRL+EL+GL Sbjct: 131 TQTLFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGL 190 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-------EDDALFL 208 +I LD ++G V V+GKG K+R +P+G +A ++++L+++ F E +A+F+ Sbjct: 191 NIMELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFV 250 Query: 209 SKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHAN 268 ++ GKR+ VQ+ ++ PH LRH+FATH+L + DLR V E+LGH+N Sbjct: 251 TEKGKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSN 310 Query: 269 LSTTQIYTHLDFQHLASVYDAAHPRA 294 LSTT+IYTH+ F+ L VY AHP+A Sbjct: 311 LSTTEIYTHISFERLKQVYQQAHPKA 336 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/314 (36%), Positives = 179/314 (57%), Gaps = 28/314 (8%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +++YL YL+VER LSP T +Y+R L F + G ++ C+ + F ++ + +G Sbjct: 9 LKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRG-KNIIACEGNDLFLFLLQEKNQG 67 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL---- 123 A +LA L+ LR FF +L+ + + +P + +S PK +HLP + +++L+ Sbjct: 68 RSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGEGG 127 Query: 124 DIDINDP--------------------LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLE 163 D D P L +R+ AM+EV+YG GLR+SELVGL + + E Sbjct: 128 DRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDIIFE 187 Query: 164 SGEVWVMGKGSKERRLPIGRNAVAWIEHWL--DLRDLFGS-EDDALFLSKLGKRISARNV 220 + + GKG+KER +PIG A+ ++++L D L G + + LFL+ G ++ + + Sbjct: 188 TRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGI 247 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 +W G+ +++PHK RHSFATH+L+ DLR VQE+LGHA+++TTQIYTHL Sbjct: 248 WDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSR 307 Query: 281 QHLASVYDAAHPRA 294 Q L V+ AHPRA Sbjct: 308 QRLLEVFRKAHPRA 321 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 177/306 (57%), Gaps = 14/306 (4%) Query: 3 DLHTDVERYLR----------YLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCD 52 D ++ ER LR L +E SP T+ Y+R + G+ + Sbjct: 7 DAPSEAERALRRGFHLQAFEDALQIEEGASPRTIEAYRRDVIRCAAQMRAMGITQAKDIT 66 Query: 53 VTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 +R F + GL +S+ +SALR++F +V++ + +P + + +P+ R LP+ Sbjct: 67 PAALREFVYHLKDLGLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPE 126 Query: 113 NIDVDDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + VD++ RLL +++ LA RDRAMLE+ YGAGLR+SE +G+ +K + LE V V+G Sbjct: 127 VLSVDEVTRLLAAPGLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLG 186 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWG 228 KG+KER +PIGR+A+ + +L +LR + G LFL+ G +S K ++ Sbjct: 187 KGNKERLVPIGRSAIGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYV 246 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 G+ V PH LRHSFATH+LE DLR VQE+LGHA+++TTQIYTH+D ++L SV+ Sbjct: 247 GMAGIEKPVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHR 306 Query: 289 AAHPRA 294 HPRA Sbjct: 307 QFHPRA 312 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/295 (35%), Positives = 172/295 (58%), Gaps = 8/295 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL ++E Y+ YL ER SP TL +Y R L + E L + +V R++ Sbjct: 4 DLKREIENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTNKRNV---RSYIQF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +K ++ ++ +LRSFF++L++ ++ + + PKA + LP+ + VD++ +L Sbjct: 61 IAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKL 120 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ ++D + +RDRA++E +Y G+R+SELVG++ + ++ GE+ V GK +KER + + Sbjct: 121 LNSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIV 180 Query: 182 GRNAVAWIEHWLD-LR-DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G + ++ + D +R L + A FL+ G RIS R ++ ++ + N V P Sbjct: 181 GEETLKILQLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYT--KDFNKKVSP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+FATH+LE DLR VQELLGH +STTQIYTHL + + Y +HPRA Sbjct: 239 HTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRA 293 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 169/301 (56%), Gaps = 7/301 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT+ V ++ YL +E+ S +T+ Y +E + F + G+ +++ R + Sbjct: 1 MTNKQRLVHLFIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYL 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + KGL +++ ++SALRSF+ +L+ + +K NP VS PK + +P + +++ Sbjct: 61 TEAYEKGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELK 120 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L + D++ PL R++A+LE++Y G+R+SEL L LDL V V GKGSK+R + Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 180 PIGRNA-VAWIEHWLDLRDLFGSE-----DDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P G A A I + D R ++ D +FL++ G ++ R V+ E K Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H+HPH LRH+FATH+L DLR VQELLGH+NLS+TQ+YTH+ L Y + HPR Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPR 300 Query: 294 A 294 A Sbjct: 301 A 301 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 173/291 (59%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNFAVRSRRK 66 +E++L + V S T+ Y++ + I++ S N + + + +V VR+F S Sbjct: 14 LEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAYSNNN 73 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-I 125 +G S+ ++SALR+FF +L QN ++AN V+ PK + LP + DD+N+L + I Sbjct: 74 EVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKLRNVI 133 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 DI+ +RDR ++E +Y +GLR SELV L ++LE EV V+GKG+KER NA Sbjct: 134 DISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFFSENA 193 Query: 186 VAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 W E ++ + + + +F++ G+RI+ R++++ A++ K G+N V PH R Sbjct: 194 RKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTPHVFR 253 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFAT +L + D+R +QELLGH+++STTQ+YTH+ L +Y AHP A Sbjct: 254 HSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLA 304 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 171/295 (57%), Gaps = 6/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 +H + ++ YL VER L+ T ++YQ+ L + + S+ ++ + D +++ F ++ Sbjct: 1 MHGLIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPE-DFGVIQAF-LKH 58 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + AS++ +SALR F+ +L+ + +K++P + PK +HLP + +++ L+ Sbjct: 59 QNDTKAPASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALM 118 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D PL +RDRA+ E+MY GLR+SE+VGL + L L + V GKG KER +PI Sbjct: 119 AKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPIS 178 Query: 183 RNAVAWIEHWLD---LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A W+ +L R + + A+F++ G ++ + + K + G+ V P Sbjct: 179 PQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFAT +LE+ DLR VQELLGH+++STTQIYTHL QHL +VY HPR Sbjct: 239 HTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG 293 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 181/305 (59%), Gaps = 13/305 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQL-EAIINFASENGLQSW----QQCDVTMVRN 58 ++ ++ +L YL VE+ SP T +YQ+ L + FAS G + D + R+ Sbjct: 1 MYVHIDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRH 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + +++GL A++A RL+A RSF+ +L + + NP V++PK + LP+ + D+ Sbjct: 61 YLAHMQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDE 120 Query: 119 MNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L++ D PL +RDRA+LE +Y GLR+SELV LD+ LD+ SG + V GK ++ER Sbjct: 121 AKELVEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARER 180 Query: 178 RLPIGRNAVAWIEHWLD-------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIK 230 +P+G AV ++ +L + ++ALFL+ G+R+SAR ++K ++ K Sbjct: 181 LVPLGSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK 240 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 L + PH LRHSFATH+L + DLR VQEL+GH LS+TQ+YTH+ + L VY + Sbjct: 241 VSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKS 300 Query: 291 HPRAK 295 HPRAK Sbjct: 301 HPRAK 305 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 167/292 (57%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVRSRRK 66 ++ ++ Y+ VER LS T+++Y+R L++ + +E + W + + + Sbjct: 5 IKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDS 64 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 G + A L+++RSF +L+ + +P+ + K R LPK + ++++ RLLD Sbjct: 65 GKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTP 124 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + P RD+AMLE++Y G+R+SE++ L + L G + GKG KER +PIG A Sbjct: 125 KLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAA 184 Query: 186 VAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + IE ++ + L + DALFL+ GK+IS + K + ++ G+ + PH L Sbjct: 185 ASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTL 244 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE+ DLR VQE+LGHA++STTQIYTH+ L VY HPRA Sbjct: 245 RHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 174/297 (58%), Gaps = 14/297 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E +L YL++ER S T +Y L + + E G++ ++ +R F G Sbjct: 12 LETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKP-EEAAPGDIRKFIQELHEIG 70 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L A+S+A +SA+RSF +L+++ NPA+ + PK R+LP + +++M LLD + Sbjct: 71 LEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPL 130 Query: 128 ----NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 +RD+AMLE +Y G+R+SEL+GL +L ++ G V V GKGSKER +P+G+ Sbjct: 131 KRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVPVGQ 190 Query: 184 NAVAWIEHWLD-LRD--LFGSEDDALFLSKLG---KRISARNVQKRFAEWGIKQGLNNHV 237 A++W++ +LD LR + + D +FL+ G R++A N+ + E + G+ + Sbjct: 191 TAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVR---EHAVIAGIEKPI 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH RHSFATH+LE DLR VQE+LGH+++ TQIYTH+D + V+ HPR Sbjct: 248 SPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPRG 304 >UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desulfovibrio RepID=Q311L4_DESDG Length = 332 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 167/310 (53%), Gaps = 19/310 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVT--MVRNFAVRSRR 65 E Y+ YL++E+ S T+ Y L +F + D+ + +F R Sbjct: 19 AEMYMGYLALEKGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHR 78 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 + +G +S+ +LSALR FF +L + +++ P +G++ P+ + P+ ++VD +LD Sbjct: 79 QHVGKSSMGRKLSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDT 138 Query: 126 DINDP--------------LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 RD A+ E++YG+GLR+SE + LD+ H D SG + V G Sbjct: 139 RTQAASRAQVHVRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTG 198 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWG 228 KGSKER +P+ + ++ WLD+R D+ G + A+FL G R++ R + + Sbjct: 199 KGSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLC 258 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 GL V PH LRHSFATH+LE+ D+R VQELLGH L+TTQ YTHL + + VYD Sbjct: 259 RAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYD 318 Query: 289 AAHPRAKRGK 298 AHP +K GK Sbjct: 319 RAHPGSKAGK 328 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 113/297 (38%), Positives = 167/297 (56%), Gaps = 10/297 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF--ASENGLQSWQQCDVTMVRNFAVRSRR 65 ++RYLRYL+ E + T Y L +I +++G+ + +R R Sbjct: 44 IDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLYA 103 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 G+ +SLA +L+A R FF +LV + +L ++P K + +PK R LPK + +++ LL Sbjct: 104 VGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLSA 163 Query: 126 DI---NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++PLA+R+ AM+E+ Y +GLR++EL GLD+ +D G V V+GKG KER +P+G Sbjct: 164 AERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPVG 223 Query: 183 RNAVAWIEHWLD-----LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A+ I +L L ALFL+ G+R+S R Q + L + Sbjct: 224 EQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALERGI 283 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRH+FATH+L+ DLR VQE+LGHA LSTTQIYTH+ + L +Y HPRA Sbjct: 284 SPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 171/291 (58%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++RY+ +L++ER L+ +L +Y L +F N + + Q D ++ + V KG Sbjct: 5 IDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLEAKG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 L S A L A+R F+ +L +N ++NP + + PKA LP+ + D + LL++ D Sbjct: 65 LSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLEMPD 124 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 +R+ AMLE++YGAGLR+SELVGL + +DL + V + GKGS+ER +P G +A Sbjct: 125 RTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGSHAR 184 Query: 187 AWIEHWLDLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 WL+ + + +A LF+++ G ++ + K ++ + G++ V PH LR Sbjct: 185 QRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSPHTLR 244 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFATH+LE DLR VQ +LGHA++++TQIYTH+ Q+L ++ HPR Sbjct: 245 HSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPRG 295 >UniRef50_UPI000190F72D site-specific tyrosine recombinase XerC n=5 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190F72D Length = 116 Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 95/116 (81%), Positives = 101/116 (87%), Gaps = 2/116 (1%) Query: 1 MTD--LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRN 58 MT+ L DV R+LRYL VERQLSPITL NYQRQL+AII A E GL+SWQQCD +VR+ Sbjct: 1 MTEVALSLDVSRFLRYLGVERQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRS 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNI 114 FAVRSRRKGLG ASLALRLSALRSFFDWLVSQ ELKANPAKGVSAPKAPRHLPKNI Sbjct: 61 FAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNI 116 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 134/357 (37%), Positives = 183/357 (51%), Gaps = 68/357 (19%) Query: 3 DLHTDVERYLR----YLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRN 58 D + D +R+L YL ER S T Y R L E V + Sbjct: 8 DTNCDWQRWLARFDDYLRTERGGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAV--- 64 Query: 59 FAVRSRRKGL----GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNI 114 +R+ GL AA++A +LSALRSFF +LV + L NPA+GV +PK + LP+ + Sbjct: 65 LDIRAHLAGLYERNDAATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRAL 124 Query: 115 DVDDMNRLLDIDIN---------------------------------------------- 128 DVDD RL++ Sbjct: 125 DVDDAFRLIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSR 184 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLD---LESGEVWVM-GKGSKERRLPIGRN 184 +PL +RDRA+ EV+YG+GLR+ E LD+ +D L S V V GKG KER +P+GR Sbjct: 185 EPLKLRDRAIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQ 244 Query: 185 AVAWIEHWLDLRDLF-----GSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 AVA ++ +L++R L G+ D A LFLS G R++ R+VQ+ + G Sbjct: 245 AVAALDAYLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGAY-EAT 303 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHSFATH+L+S DLR +QELLGHA+L++TQIYT + HL +VYDA+HPRA+ Sbjct: 304 PHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRAR 360 >UniRef50_C8N6J9 Tyrosine recombinase XerC n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N6J9_9GAMM Length = 301 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/297 (39%), Positives = 169/297 (56%), Gaps = 8/297 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D++ +L YL ER + TL Y+R L + L + + D+ +N+ ++ Sbjct: 3 DIDDHLAYLRYERGKAAQTLATYRRLLYQFAEAHRDRDLHALEPRDL---QNYLTKTLGG 59 Query: 67 G-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRH-LPKNIDVDDMNRLLD 124 G A+L +ALRS++ WL L +PA + P+ R LP + + + LL+ Sbjct: 60 GKYSPATLNQHRAALRSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTLLE 119 Query: 125 IDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D P +RD +LE+ Y AGLRL+EL LD + L +S + GKG ER + IG Sbjct: 120 APATDNPNLIRDHTILELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVERLIFIGS 179 Query: 184 NAVAWIEHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + W +R L +++ ALFL+K G R++ R + R + ++ +VHPH Sbjct: 180 KAREALARWQTVRGQLLKKADEPALFLNKNGGRLTERGIALRLKAYAAERLPGVNVHPHM 239 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LRH+FA+H+L+SSGDLR VQELLGH NL+TTQIYTHLD+QHLA YD HPRAK+ + Sbjct: 240 LRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQHLARTYDEKHPRAKKKR 296 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 169/287 (58%), Gaps = 3/287 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 ++L L ER LS T+ Y++ ++ F + G ++ D + F + R++G Sbjct: 12 KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGC-NFNSIDDEYIMLFIIWLRKRGDS 70 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIN 128 + +LA RLS++R+FF W V ++ L +NPA + PK P LP + D+M RLL DI Sbjct: 71 SRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDIT 130 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 + L RD+ +LE++Y +G+R+SEL+G+ + D + G + V GKG KER +P+ +A+ Sbjct: 131 NKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKL 190 Query: 189 IEHWLD-LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + H++ +R +F + LFL++ GK ++ + + K + + +N + PH RH+FA Sbjct: 191 LIHYVQKIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTFRHTFA 250 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 TH+LE DLR VQ LLGH ++S T++YTH+ L ++ HPR+ Sbjct: 251 THLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRS 297 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 177/298 (59%), Gaps = 11/298 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDV-TMVRNFAV 61 +L ++ +L YL+VE L+ T +Y R L + + L+ ++ D+ +R V Sbjct: 9 NLEKEINLFLEYLTVELGLAYNTRESYGRDLRLFAGWI-KKPLEDVKREDILAYMRMLKV 67 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 S + +L+AL++FF ++ ++ L+ +P++ V A LPK + ++++ + Sbjct: 68 HQ----YAPTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQ 123 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L D+ P RDR MLEVMY G+R+SEL+ L ++LE+ V GKG+KER +P Sbjct: 124 LFSAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIP 183 Query: 181 IGRNAVAWIEHWL-DLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G+ A+ +++ +L +R LF G +DD+LFL+ G ++ + + +G+K GL Sbjct: 184 LGQYAIQYLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKP 243 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATHML++ DLR VQELLGHA++STTQIYTHL L V+D HPRA Sbjct: 244 LTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/267 (40%), Positives = 157/267 (58%), Gaps = 13/267 (4%) Query: 44 GLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSA 103 GL + + +R++ +R+ ++A +LS LRSF+ +LV + + NP GV Sbjct: 84 GLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTNPVAGVHT 143 Query: 104 PKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDL 162 PK R LP +D +++ LL D + PL +RDRA+LE++Y GLR+ ELV L+ +D Sbjct: 144 PKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVALNRGDIDY 203 Query: 163 ESGEVWVMGKGSKERRLPIGRNAVAWIEH-----WLDLRDLFGSEDDAL-------FLSK 210 G V V GKG KER +P+G A+ + H W LR + + +L FL+K Sbjct: 204 SEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAKQPLFLNK 263 Query: 211 LGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLS 270 LG R+S R+V++ + + L+ + PHK+RH+FATHML DLR VQE+LGHA+LS Sbjct: 264 LGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRAVQEMLGHASLS 323 Query: 271 TTQIYTHLDFQHLASVYDAAHPRAKRG 297 TTQIYTH+ Q L + Y AHPR +R Sbjct: 324 TTQIYTHVTTQRLRTEYLRAHPRQRRA 350 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 168/291 (57%), Gaps = 11/291 (3%) Query: 14 YLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFAVRSRRKGLGAA 71 YL+ ER+ S T+ NY++ E + G+ + + + +R+F + ++R+ G Sbjct: 35 YLAHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIEAQRR-FGRR 93 Query: 72 SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-------- 123 +L +S LRSFF + + + +++ NP GV PK + LPK + + M RLL Sbjct: 94 TLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGPQQLLA 153 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 I+ A RDR +LE++YGAGLR+SEL GL+ +DLE+G ++GKG KER PIGR Sbjct: 154 SESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERLCPIGR 213 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 AVA + + D + D + +++ G R+S R VQ + L + PHKLR Sbjct: 214 VAVAVLRKFRDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAELPMDLTPHKLR 273 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HS+ATH+L + DLR VQELLGHA L+TTQ+YTH+ L +Y AHPRA Sbjct: 274 HSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 176/295 (59%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T +E YLR++ +E+ LS T+ Y+R L+ ++ +E+ + D +++ Sbjct: 1 METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +G A S+A +S +RSF + + + +P + +PK + LP ++VD++ LL Sbjct: 61 IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D+N RDR MLE++Y G+R+SEL+ L++++++L G V V GKG KER +P+G Sbjct: 121 ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG 180 Query: 183 RNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + ++ +++ + L + + LFL+ GK +S + + K + G+K + + P Sbjct: 181 DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE+ DLR VQE+LGH+++STTQ+YTH+ + +Y+ HPRA Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira RepID=XERC_LEPIC Length = 318 Score = 191 bits (484), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 175/296 (59%), Gaps = 3/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L+ ++++ YL +E+ S T+ Y L+ F + L +Q V + FA + Sbjct: 23 LNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLA 82 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ + S + +LS+LR+F+ L+ ++ +K+NPA +S PK + +PKN +++ +L Sbjct: 83 KKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEIL 142 Query: 124 DIDINDPLAV---RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + + + V RDRAM+EV+Y +GLR+ ELV + L + + V+GKG KER + Sbjct: 143 EFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVY 202 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 G+ AV+ ++ +L+ R++ + + +FL++ GK+++ R V+ E K G + PH Sbjct: 203 FGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPH 262 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 K RH+FAT +L++ ++R VQELLGH++LSTTQIY + + + VY AHP A++ Sbjct: 263 KFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK 318 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 110/296 (37%), Positives = 175/296 (59%), Gaps = 10/296 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ VE +LR+L+ ER LS T+ Y+ LE F L +W V F + Sbjct: 1 MNEQVEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R + ++++A R++A++SFF +L + ++ +P + + +PK R LP+ + ++ LL Sbjct: 61 RERRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELL 120 Query: 124 DIDINDPLA--VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ + P +RD+AMLE++Y G+R+SELV L++ +DLE EV +GK + R LPI Sbjct: 121 ELPLRSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPI 180 Query: 182 GRNAVAWIEHWLDL-RDLF----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +A +E + D+ R+ GS +ALFL+ GKR++ + ++ + GL++ Sbjct: 181 NGSAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLSD- 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + PH LRHSFA HML + DLR VQELLGH ++STTQIYTHL+ H +S AHP Sbjct: 240 LTPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLN--HESSHTPHAHP 293 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 172/298 (57%), Gaps = 4/298 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ L ++ +L ++ VE+ L+ ++ Y R L + E G+ +W++ + ++ Sbjct: 17 MSALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHL 76 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+GL S A LSA+RS L ++ A+P+ + +P+ R LP + D+++ Sbjct: 77 AELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVD 136 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL D+ +RDRAMLE++Y GLR+SELV L + ++LE+ + GKG KER + Sbjct: 137 RLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196 Query: 180 PIGRNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A ++ +L + R L G LF++ G R++ + K + G+ Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 256 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PHKLRHSFATH+LE DLR VQE+LGHA++STTQIYTH+D H+ +YD HPRA Sbjct: 257 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 167/297 (56%), Gaps = 5/297 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L +YL YL +R + T+ +Y+RQ++ F E + + M+R + Sbjct: 5 TTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYLT 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + K L ++ +LSALRSFF++L+ + + NP + + K + P + +++ Sbjct: 65 KLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILG 124 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD I+ D L +R++AM+E+MY +GLR SE+V L + ++D +++ GKG+K+R +P Sbjct: 125 LLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYVP 184 Query: 181 IGRNAVAW-IEHWLDLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 A W I++ + R+ +++ +F++K G ++ R V+ Sbjct: 185 FHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTKK 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 +HPH +RHSFATH+L + D+R VQELLGH NLSTTQIYTH+ HL VY AHPR Sbjct: 245 IHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPR 301 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 167/291 (57%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ ++ YL VE + T+ YQ L+ I F + + ++ +F + + +G Sbjct: 5 IDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEKHRG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 S+ + ++R F+ +L+ + +L+ NP + +PK + LP + + + LL D Sbjct: 65 QSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLSAAD 124 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + L +R++A+LE++Y G R+SE+ + + ++LE G + GKGSKER +P+G+ A Sbjct: 125 VKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGKKAS 184 Query: 187 AWIEHWLD-LRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 I+ +L +R ++ LFLS+ G+ + N+ +K G+ + PHKLR Sbjct: 185 IAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISPHKLR 244 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFATH+LE+ DLR VQE+LGH ++STTQIYTH++ QHL +++ HPRA Sbjct: 245 HSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 6/299 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T + ++ ++RY+ VE+ S T+ +Y +E +F E+ ++ VR++ Sbjct: 23 TKTNDSIQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLT 82 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 K S+A ++S++RS F +L+ + EL N PK LP + ++M+ Sbjct: 83 FLYDKAYARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDE 142 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + N PL RDRA+LE++Y G+R+ E LD+ +DL G +V GKG+KER +P Sbjct: 143 LFKAFEGNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVP 202 Query: 181 IGRNAVAWIEHWLD-----LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 IG A + +++ L SE LFL+ G ++ R++++ A+ + + Sbjct: 203 IGSFACDALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQK 262 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+ PH LRHSFATH+L + DLR VQELLGH +LSTTQ+YTH+ L VY HPRA Sbjct: 263 HIRPHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 172/296 (58%), Gaps = 6/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T +ER++R+L+ E+ LS L+ ++ LE F + Q + + F Sbjct: 1 MQTHLERFIRFLAAEKGLSTAYQLSVRQTLEEFARFLEMDN-TGLAQTGIDTLSAFLRHL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G+ +S+ + + LR FF WL L+ +P+ + P+ LP +D ++ LL Sbjct: 60 QDRGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLL 119 Query: 124 D-IDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 + IDI D PL RDRA+LE++Y G+R+SE++ ++ D + V V+GKG+K R +P+ Sbjct: 120 ESIDIQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPV 179 Query: 182 GRNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 GR+A+ ++ +L+ + + +FL+ G+ ++ +++ E GL HV Sbjct: 180 GRSALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVF 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR +QE+LGHA++STTQIYTHL+ Q L S++ HPR Sbjct: 240 PHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPRG 295 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 173/289 (59%), Gaps = 6/289 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINF-ASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 Y+ L VER L+ +L +Y+R L+ + +E L++ + + +R+F + +GL Sbjct: 8 YMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSNRGLA 67 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIN 128 A S+ +S++R++ ++L ++ +K NPA+ + PK PR LP + + +++++L I N Sbjct: 68 ANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGIIPEN 127 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 P+A RD A+ E+MY GLR++EL + +S + V GKGSK+R +PIG A Sbjct: 128 APMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPIAREN 187 Query: 189 IEHWLD-LRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 ++++L+ R+ ++ +FLS+ G++++ + +W + V PH LRH Sbjct: 188 LKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEVSPHTLRH 247 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 SFATH+LE DLR VQE+LGH +++TTQ+YTHLD +HL V+ HPR Sbjct: 248 SFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 169/290 (58%), Gaps = 6/290 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 Y+RYL +E+ SP T+ YQ+ + A F + + + + + +R + ++ G Sbjct: 16 YMRYLQIEKGASPSTISQYQKDICAF--FQNMDHTKPVEDVNHQDIRRYLALLQKDGYAR 73 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDIND 129 ++A +L++LRS + +L + ++ NP V+ PK + LP + ++M + D ID + Sbjct: 74 RTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTDS 133 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 L R+ A++E++Y +G+R SE GL +K +DL+ + VMGKG KER LP+G AV + Sbjct: 134 LLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSFAVEAL 193 Query: 190 EHWLDLRDL-FG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 +LD R FG ++ D LF++ G ++ R ++K A+ L + + PH +RH+F Sbjct: 194 SLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLTPHVIRHTF 253 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 ATHML DLR VQELLGH +L TQIYTH+ L VY +HPRAK+ Sbjct: 254 ATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRAKK 303 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/278 (37%), Positives = 158/278 (56%), Gaps = 2/278 (0%) Query: 19 RQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLS 78 + S TL Y L+ + N+ +E+ L + + T +R + + ++ ++S Sbjct: 18 KNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYLGVTSEGDYKKNTVLRKIS 77 Query: 79 ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND-PLAVRDRA 137 +RSF +L+ +K NP K + PK + LPK + ++ +RL+D N L RD+A Sbjct: 78 VMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDTAANQGKLPARDKA 137 Query: 138 MLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRD 197 + E++Y +GLR SE+ GL IK +DL G V VMGKGSKER +PI A+ ++ +L R Sbjct: 138 LFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDLAIEALKEYLSTRG 197 Query: 198 LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDL 257 ++ S D LFL++LG R++ + IK L V H LRHSFATHML + DL Sbjct: 198 VYNS-GDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHSFATHMLNNGCDL 256 Query: 258 RGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 R +QE+LGH +LS TQ+YTH+ L +Y HPR+K Sbjct: 257 RSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRSK 294 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 172/300 (57%), Gaps = 14/300 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR-- 65 V Y+ +L+VE+ SP TL NYQR L + + ++ L + D + F RR Sbjct: 28 VAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDL-NIDSVDEPDIEQFIADLRRGD 86 Query: 66 -----KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 L A+S A A+RS + + +L + A GV+ ++ + LP + V+ +N Sbjct: 87 STLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQVN 146 Query: 121 RLLDI----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 RL++ + ++P+A+RDRA++E++YG G+R+SE + LDI +D V V+GKG KE Sbjct: 147 RLIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGKGRKE 206 Query: 177 RRLPIGRNAVAWIEHWL--DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 R +PIG A+ I+ WL + D ALFL+ G R+ ++V K + GL Sbjct: 207 RLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAERCGLG 266 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + V PH LRHS+ATH+L+ D+R VQELLGHA+++TTQIYT + +L VY +HPRA Sbjct: 267 DSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPRA 326 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 175/300 (58%), Gaps = 23/300 (7%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAI-------INFASENGLQSWQQCDVTMVRNF 59 ++ ++ YL+VE L+ T +Y R L I S + + ++ V +N+ Sbjct: 10 EIALFMDYLTVEMGLARNTRESYGRDLRLFAVWVKKPIKEISRDDILTYMS--VLKAQNY 67 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 AV S A +L+AL++FF ++ ++ ++ +P + V + LPK + VD++ Sbjct: 68 AVTSS---------ARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEV 118 Query: 120 NRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 NRL + D++ P RDR MLEVMY G+R+SEL+ L + ++L S V GKG+KER Sbjct: 119 NRLFEAPDLDTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERL 178 Query: 179 LPIGRNAVAWIEHWLD-LRDLFGSED---DALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P+G A+ +++ +L +R F E+ D LFL+ G ++ + + +G+K + Sbjct: 179 IPLGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIA 238 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATHML++ DLR VQELLGH+++STTQIYTHL L ++YD +HPRA Sbjct: 239 KSLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 178/302 (58%), Gaps = 26/302 (8%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAII----------NFASENGLQSWQQCDVTMVR 57 VE++L + +ER L+ TL +Y+ L ++ +F S +GLQ +Q V + Sbjct: 15 VEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVD--Q 72 Query: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 ++ SR A LSA+R F +L + +P+ + +PK P+ LPK+I + Sbjct: 73 DYKQTSR---------ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEE 123 Query: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ LLD D NDP+ +RD+AMLE++Y GLR++ELV L ++++ L G V V GKG KE Sbjct: 124 QVDALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKE 183 Query: 177 RRLPIGRNAVAWIEHWLDL--RDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 R +P+G NA+ WIE ++ L G + D +F SK ++++ + R + + G+ Sbjct: 184 RLVPMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGI 243 Query: 234 N-NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + +H+ PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L ++ HP Sbjct: 244 DTDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 Query: 293 RA 294 RA Sbjct: 304 RA 305 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 174/299 (58%), Gaps = 18/299 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E YL +L+ + S T+ Y+ L ++++ GL + Q + +R + + R G Sbjct: 35 IEDYLDFLTFTKGRSENTVKAYRNDLHSLVD-----GLTTVDQLTLHHIRRWQADALRAG 89 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-DID 126 +SL+ R SA+R+F WL + ++++PA +S+P+ + LP+ + D +L +++ Sbjct: 90 HARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLE 149 Query: 127 IN----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + DP+A+RD AM+E MYG G+R+SEL L+I LD V ++GKG+K+R +P G Sbjct: 150 VGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPFG 209 Query: 183 RNAVAWIEHWLDL-RDLFGSE------DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +A ++ W+D+ R + D+A+FL K G RI R V + Sbjct: 210 ESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQV-RTVVHQATSTVSGG 268 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHS AT +LE DLR VQE+LGHA+L+TTQIYTH+D + L +V++ AHPRA Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E0_ACIC5 Length = 310 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 172/302 (56%), Gaps = 17/302 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVRNFAVR 62 VE YL L ER SP TL Y R+L +A + G+++ + T +R + Sbjct: 12 VEAYLAALRNERGSSPHTLRAYTRELRDFAAYAERLLGKDVGVKAMEH---THIRAYLGE 68 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +GL AS A L+A+RS+ WL EL+ +PA V+ PK P+HLP+ ++DMNRL Sbjct: 69 LYERGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRL 128 Query: 123 LDIDINDPLA--VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +D + A RDR +LE++YG G+R +ELVG++++ + + + V GKG KER +P Sbjct: 129 VDASSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYVP 188 Query: 181 IGRNAVAWIEHWLDLRD----LFGSEDDALFLS---KLGKRISARNVQKRFAEWGIKQGL 233 IG A + +L R+ G + AL L+ + R++ R+V + + + QGL Sbjct: 189 IGDAAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQGL 248 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 VHPH LRH+F TH+LE DLR +QELLGH LSTTQ YT L + +VYD HPR Sbjct: 249 PADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHPR 308 Query: 294 AK 295 AK Sbjct: 309 AK 310 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 164/291 (56%), Gaps = 4/291 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D+ + YLS ERQLS T+ Y + F EN + Q + + ++K Sbjct: 2 DMLDFKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENN-TAPQNVRPDFIDEYIYHLKQK 60 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 GL S+ + A++SF+ +L+ ++K +P + + +PK + +P+ + ++++RLL Sbjct: 61 GLSPKSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFP 120 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 +R +LE+ Y GLR+SELV L I+ ++L+ V GKG+K+R +PI AV Sbjct: 121 PKTFAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAV 180 Query: 187 AWIEHWLDLRDLF--GSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 +E +L R+ + G E + +F++K GK+IS +V K + G G+ +HPH R Sbjct: 181 KVLEIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFR 240 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+FATH+L DLR +QE+LGHA+L TTQIYTHLD Q L + HPR Sbjct: 241 HTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPRG 291 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 167/294 (56%), Gaps = 10/294 (3%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D+E +L Y+++ER L+ T+ +Y+R L+ + G + W+ + Sbjct: 21 DIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSLSSA 80 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 ASLA +LSALRS +LV + + +S PKA R +P + +++ RLL Sbjct: 81 SYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLLAAP 140 Query: 127 IN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D A+RDRA+LE+ Y +GLR+SEL GL ++ +DLE G + V GKG+KER +PIG A Sbjct: 141 TGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKERVVPIGGKA 200 Query: 186 VAWIEHWLD------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + + +L +R GS+ LFL+K G +S + ++ + GL +V P Sbjct: 201 IEALATYLTAGRPHFVRSRTGSQ---LFLNKNGGPLSRVMLWMLVKKYAKRAGLTKNVKP 257 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H LRHSFATH+L DLR +QE+LGHA++STTQIYT ++ Q L +D HPR Sbjct: 258 HGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPR 311 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 186 bits (472), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 178/305 (58%), Gaps = 26/305 (8%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAII----------NFASENGLQSWQQCDVT 54 H VE++L + +ER LS TL++Y+ L ++ +F S +GLQ +Q Sbjct: 27 HGLVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLAD 86 Query: 55 MVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNI 114 +F SR A LSA+R F +L + +P+ + +PK P+ LPK++ Sbjct: 87 A--DFKQTSR---------ARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDL 135 Query: 115 DVDDMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 + ++ LL+ D NDP+ +RD+AMLE++Y GLR++ELV L ++++ L G V V+GKG Sbjct: 136 SEEQVDSLLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKG 195 Query: 174 SKERRLPIGRNAVAWIEHWLDL--RDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIK 230 KER +P+G NAV WIE +++ L G + D +F SK K+++ + R + + Sbjct: 196 GKERLVPMGENAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVI 255 Query: 231 QGLNNH-VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 G++ + PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L ++ Sbjct: 256 AGIDTELLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQ 315 Query: 290 AHPRA 294 HPRA Sbjct: 316 HHPRA 320 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 186 bits (472), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 170/316 (53%), Gaps = 39/316 (12%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQL---EAIINFASENGLQSWQQCDVTMVRN---- 58 T ER+L ++++E+ SP T+ Y+R L EA + S CDV V++ Sbjct: 5 TYSERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKS---------CDVLSVQSPVIE 55 Query: 59 -FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 F R +G A S+A +A+R +L+ + NP GV K P +PK + D Sbjct: 56 QFIASLRAEGKAAKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSED 115 Query: 118 DMNRLL-DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ R+L + D A+RDRA+LE +Y G R+SE GL + LD+ES V + GKGSKE Sbjct: 116 EVARILASVTGVDSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKE 175 Query: 177 RRLPIGRNAVAWIEHWLDL--RDLFGSED-------DALFLSKLGKRISARNVQKRFAEW 227 R +P G +A A +E WL R + SE DA+FL G R+S R A W Sbjct: 176 RIVPFGSHAKAALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLS------RQAAW 229 Query: 228 GIKQG------LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 281 I Q + + V PH LRHS ATHML DLR VQELLGHA++STTQ+YT +D + Sbjct: 230 RIVQKFAQIAEVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNE 289 Query: 282 HLASVYDAAHPRAKRG 297 L +Y +HPRA G Sbjct: 290 VLFDMYKESHPRALIG 305 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 186 bits (472), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 165/294 (56%), Gaps = 8/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF--AVRSRRK 66 +++LRYL VER S T Y+ + +F E+G + + VR + A+ R Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALADHRS 67 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 S++ ++++LRSF+ +L+ + +K NP V K LP+ ++M L D Sbjct: 68 SYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSV 127 Query: 127 IND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D PL +R+RA+LEV+YG+G+RLSE L + +D +S + + GKG+KER P+G A Sbjct: 128 AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFA 187 Query: 186 VAWIEHWLD-----LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + L + E D +F++ GK I+ ++ + K L++ +HPH Sbjct: 188 QDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPH 247 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L + DLR VQELLGHANLSTTQIY H+ + L Y + HPRA Sbjct: 248 MLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 162/307 (52%), Gaps = 22/307 (7%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIIN--FASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 +L+YL VER S T+ Y+ + + ++ +W Q + R F G Sbjct: 8 FLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSSLFEAGD 67 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD---- 124 S+ +LSALRSFF +++ L NP + KA + LP + ++ ++ L Sbjct: 68 SKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLTKAVGE 127 Query: 125 ---------IDINDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 I +D A RD AM+EV+Y GLR+SE GLD+ +DL G V G Sbjct: 128 YWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGIARVRG 187 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWG 228 KG KER +GR + + ++ LR G + +FL+K GKR++ R+ Q+ + Sbjct: 188 KGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRNLKNYL 247 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 I L + PHKLRHSFATH+L++ DLR VQE+LGH NLSTTQIYTH+ + + VY Sbjct: 248 IAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMKEVYK 307 Query: 289 AAHPRAK 295 AHPRAK Sbjct: 308 EAHPRAK 314 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 162/292 (55%), Gaps = 8/292 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + +YL+ ER S TL Y+R + F + L ++ +R F K Sbjct: 27 IDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKRL-NFSHAGKRDIREFLEELGNKK 85 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAP-KAPRHLPKNIDVDDMNRLLDID 126 L A+LA +L+ L SF+ +L+ +K N + + A K + +P + ++M LL++ Sbjct: 86 LSRATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLLNLP 145 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 P RDRAM+E+ Y GLR+ ELV LD+K++D S V V GK +KER +P+G + Sbjct: 146 DLKP---RDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVGDICL 202 Query: 187 AWIEHWLDLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 I+ +++ R G D +FLS KR+ R ++ + +K G V PH LR Sbjct: 203 HAIKDYINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLR 262 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H+FATH+L+ DLR VQE+LGH NLS+TQIYTH+ + L VY HPRAK Sbjct: 263 HTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRAK 314 >UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella RepID=C5VK74_9BACT Length = 294 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSRRK 66 VE++L Y+ ER SP+T++NY++ L F E Q SW+ D +VRN+ + Sbjct: 4 VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 G A+S+ RLSALRSF+ + + + ++ +P G+ PK + LP+ + +M RLLD Sbjct: 64 GNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDSK 123 Query: 127 I--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 + + V +R ++ Y G+RLSEL+GLD K +D + E+ V GK +K+R +P G+ Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGKE 183 Query: 185 AVAWIEHWLDLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + ++R+ + A F ++ GKR++ V+ + K PH LR Sbjct: 184 LADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVLR 243 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+FAT ML L V++LLGH +LSTT+IYTH F+ L VY AHPRA Sbjct: 244 HTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 164/294 (55%), Gaps = 13/294 (4%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFAS---ENGLQSWQQCDVTMVRNFAVRSRRKG 67 + YL++E + SP T+ Y+ LE +F ENG + V +R+F K Sbjct: 8 FCNYLALEGK-SPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRFLNEKP 66 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 SLA + +AL SFF + ++ NP + + PK LPK +++ LL I D Sbjct: 67 DCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTLLSIPD 126 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + P +R++A+LE +Y +GLR+SEL G+ ++ +DL+ G V V GKG+K+R +P+G A+ Sbjct: 127 TDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGSYAI 186 Query: 187 AWIEHWLDLRDLFGSED--DALFLSKLGKRISARN---VQKRFAEWGIKQGLNNHVHPHK 241 I ++L +R F E+ D LFL+K GK + + KR+ E K PH Sbjct: 187 EAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKA---KGYSPHS 243 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 LRHSFATH+L DLR +QELLGH+ LSTT+ YTH+ + + Y HPR+K Sbjct: 244 LRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRSK 297 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 182/311 (58%), Gaps = 23/311 (7%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF-----------------ASENGLQSWQQ 50 +E ++ YL+ ER LS L+ + LE + E L Sbjct: 5 IEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVAP 64 Query: 51 CDVT--MVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPR 108 +VT + ++ +R GL AAS+ L + AL+ FF WL ++ ++ + A+ + P+ R Sbjct: 65 GEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTER 124 Query: 109 HLPKNIDVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 +LP+ ++ ++RLL+ I I+ P +RDRA+LE++Y +GLR+SELV +++LDL++ + Sbjct: 125 YLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARII 184 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLR--DLFGSEDDA-LFLSKLGKRISARNVQKRF 224 V GKG+K R +P+G+ A I +L+ ++ G + + +FLS G +++ + + Sbjct: 185 RVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQIV 244 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 GL+ +V+PH LRHSFATH+L + DLR +QE+LGHA++STTQIYTH+D Q L Sbjct: 245 KACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQRLK 304 Query: 285 SVYDAAHPRAK 295 +V+ HPRAK Sbjct: 305 AVHHRFHPRAK 315 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 166/296 (56%), Gaps = 17/296 (5%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRN-------FAVRS 63 Y +YL VE+ LS T+ +Y R L A NF E + ++ + N ++ Sbjct: 10 YKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGE-------EYEINQIENINKEHIHLYLKE 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 K S++ +L +LR + +LV +N +K N + PK + LP + ++M +L Sbjct: 63 LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEIL 122 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D I + D ++ R+R M+E++Y G+R+SEL+ L +K L+++ G + V+GKG+KER +PIG Sbjct: 123 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 182 Query: 183 RNAVAWIEHWL-DLRDLFGSEDDAL-FLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 +E ++ D R F ++D+L F +K G+R+S + V PH Sbjct: 183 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 242 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RH+FATH+LE+ DLR +QELLGH+++STT IYTH+ Q + S Y HPR K+ Sbjct: 243 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 298 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 9/299 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L VE + +LS R+ SP T+ Y+ L ++ A +G + + + VR + + Sbjct: 18 LTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADT 76 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R G AA++ R SA R FF W ++ + A+P +++ K P+ LP + VD +L Sbjct: 77 RVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHIL 136 Query: 124 DIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 D + P RD A+LEV+YG GLR+ EL GLD+ +D V V GKG KER Sbjct: 137 DEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKER 196 Query: 178 RLPIGRNAVAWIEHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +P+G A+ I+ WL R+ + ALFL G+RI R V++ + + Sbjct: 197 TVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSP 256 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+ ATH+LE DLR VQ++LGH +L+TTQIYTH+ + L + + AHPRA Sbjct: 257 DLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178962A Length = 294 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 173/291 (59%), Gaps = 5/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ Y++YL E+ LS T+ +Y+ L+ + FA+E + ++ + T++ + R R++G Sbjct: 5 LDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 A+SL ++LRSFF +LV Q + +P + + PK R PK++ V+ +++LL D Sbjct: 65 KAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPD 124 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 P RD+AMLE++Y +G+++SELV L I + LE + G KER LPI A Sbjct: 125 SGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIAA 184 Query: 187 AWIEHWL-DLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + ++ D+RD + + +DALFL+ LG R++ + K ++G G++ + PH LR Sbjct: 185 ESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITPHTLR 244 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFA H+L + DLR VQE+LGH+ LSTT +Y + + VYD HPR+ Sbjct: 245 HSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAK-KSMKEVYDHYHPRS 294 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 174/291 (59%), Gaps = 5/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E+ L +L++ER + T L Y++ LE +++ + L S + + F R++G Sbjct: 14 IEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKL-SIGSVRSSHIELFLDEERKRG 72 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L +S+ + + ALR F++L QN++K NP P LP+ + ++ +LL Sbjct: 73 LSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPF 132 Query: 128 ND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 D PL RD+A+LE++Y +GLR+SEL+ L ++ E ++ V+GKG+KER +PIG+ A Sbjct: 133 PDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGKCAK 192 Query: 187 AWIEHWLD---LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 ++ ++ + L +FL++ G+ ++ +++ + G++ V+PH LR Sbjct: 193 EALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGIDKKVYPHLLR 252 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+FA+H++E+ DLR +QELLGHAN++TTQIYTH++ +HL ++ HPR+ Sbjct: 253 HTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510416 Length = 319 Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 149/257 (57%), Gaps = 14/257 (5%) Query: 52 DVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 D+ +R++ + G +++A +++A++SFF + V+Q+ L NPA + PK LP Sbjct: 63 DLNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLP 122 Query: 112 KNIDVDDMNRLL--------DIDINDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKH 159 + L+ + D +DP+ VRD A+LE++Y +R+SEL GL+ Sbjct: 123 TVLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGD 182 Query: 160 LDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED--DALFLSKLGKRISA 217 +D + + V+GKG+KERR+P G+ A ++ WL LRD F SE DALFL G RI A Sbjct: 183 VDHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGA 242 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 R V++ +G + PH LRHS ATHML+ DLR +QELLGH+ +S+TQIYTH Sbjct: 243 RQVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTH 302 Query: 278 LDFQHLASVYDAAHPRA 294 + Q L Y AHPRA Sbjct: 303 VSMQRLQETYRQAHPRA 319 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 183 bits (464), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 166/293 (56%), Gaps = 9/293 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ--SWQQCDVTMVRNFAVRSRR 65 ++ +L L + LS TL Y+ L + GL+ Q DV + V + Sbjct: 11 IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQF 70 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-D 124 +A L LS+LR F+++L+ ++ +P + +PK RHLP ++ ++RLL + Sbjct: 71 ARTSSARL---LSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAE 127 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 +++DP+ RD+AMLE++Y GLR+SELVGL ++ + L G V ++GKG KER +P+G Sbjct: 128 PNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEM 187 Query: 185 AVAWIEHWLDL--RDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+ +EH+L +L G + D +F SK + ++ + R + + G+ + PH Sbjct: 188 AITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHT 247 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ L ++ HPR Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG 300 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 170/307 (55%), Gaps = 23/307 (7%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAI---INFASENGLQSWQQCDVTMVRNFAV---RS 63 R++ +L ER LS T+ Y L+ +N + Q D +R + ++ Sbjct: 24 RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKT 83 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+K S A +LS LRSF+ +L + ++ NPA V+ PK +P + VDD+ LL Sbjct: 84 RKK----TSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLL 139 Query: 124 DIDINDPLA--------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 D +N A R+ A+ E MY G+R+SEL G+D +D G V V+GKGSK Sbjct: 140 D-SLNAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSK 198 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQ 231 ER +P+G A+ ++ +L + D E ALF + G+R++ R+V + + Sbjct: 199 ERIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRC 258 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 GL H+ PH LRH+FATH+L S DLR +QE+LGH+NLSTTQ YTH+ L VYDAAH Sbjct: 259 GLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAH 318 Query: 292 PRAKRGK 298 PR++R + Sbjct: 319 PRSRRDR 325 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/295 (31%), Positives = 172/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +VE+++ +L +++LS TL +Y+R +E I + E + + + T V + + Sbjct: 1 MEANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++KG ++++ L+++RSF+ +L + +P + +PK + LP+ + ++ LL Sbjct: 61 QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D D +RD+AMLE++Y G+R+SEL+ L++ ++ + G + KG++ER +PIG Sbjct: 121 DQPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKC-NKGTRERTIPIG 179 Query: 183 RNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + A + +L+ F S++ ALF++ GKR++ + K + + +N + P Sbjct: 180 SISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+LE+ DLR +QE+LGH+++S+TQIY + + VY HPRA Sbjct: 240 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 164/307 (53%), Gaps = 18/307 (5%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 ++E +L +L V+R LSP T + Y L + F ++ G + +V+ A +R Sbjct: 21 EIESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLY 80 Query: 67 GLGAA--SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 LG A ++A +L+A R+FF + + N A V PK + P+ ++VD +LD Sbjct: 81 ALGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLD 140 Query: 125 ID--------------INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 D LA RD A+ E++YG+GLR+SE +GLD+ L L+ V V Sbjct: 141 TPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVF 200 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGI 229 GKG++ER P+ +V + WL+ R E + ALF+ G R+ R +R Sbjct: 201 GKGARERMSPLSDTSVTALRAWLEQRGTLAPEGEKALFVGARGGRLDRREAMRRIERLCR 260 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 G+ V PH LRHSFATH+L++ DLR VQELLGH L+TTQ YT + + L +YD Sbjct: 261 NAGVEP-VSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDE 319 Query: 290 AHPRAKR 296 AHPRA++ Sbjct: 320 AHPRAQK 326 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 8/298 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L D+E ++ YL + LS TL Y+ L+ + ++ L+S + + Sbjct: 3 TKLTQDIELFIDYLWTQVGLSDATLSAYRGDLQQVQKILADVPLKS---ATIEQMMQVLA 59 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +G S+A S+L FF + + Q E NP + K RHLP+ + D+ Sbjct: 60 QFHDRGYSHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEA 119 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL D+ L +RDRAMLE++Y GLR+SELVGL + + L+ G V ++GKG KER +P Sbjct: 120 LLSAPDVQTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVP 179 Query: 181 IGRNAVAWIEHWLDLR--DLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLN-NH 236 G A W++ ++ L G + D +F+S+ G +S + R + GL+ N Sbjct: 180 FGEIAHEWLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNK 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FA+H+L DLR +Q LLGH++LSTTQIYTH+ Q L S++ HPRA Sbjct: 240 ISPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 169/302 (55%), Gaps = 11/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 ++ + V ++LR L E+ S T+ Y LE F++ G W D +R F Sbjct: 3 VSQVEKGVAQFLRSLK-EKNSSVHTIKAYTTDLE---EFSAFLGPAKWDDIDHVRIRGFL 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KGL S+A L+ALRS + WL + ++ NPA V+ PK P+ LP+ ++++N Sbjct: 59 SHLYDKGLSKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELN 118 Query: 121 RLLDIDINDPLAV--RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 ++D ++ + + RD + E++YG G+R SEL G+++ + + + + GKG KER Sbjct: 119 TVMDAEMPEAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERF 178 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSE----DDALFLS-KLGKRISARNVQKRFAEWGIKQGL 233 +P G A + +L R +E +AL ++ + +R+++R+V + + + +GL Sbjct: 179 VPFGDAAAVAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGL 238 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 VHPH LRH+F TH+LE DLR +QELLGH L+TTQ YT L +H+ VYD HPR Sbjct: 239 PADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPR 298 Query: 294 AK 295 AK Sbjct: 299 AK 300 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 166/307 (54%), Gaps = 21/307 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF-ASENGLQ-SWQQCDVTMVRNFAVRSRR 65 ++ +L +L+ +R S T NY++ L + E G++ +W+ R + R Sbjct: 32 IKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRFLGR 91 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 L A++ LR ALR+F+ +L+ + A+P K VS PK + LPK + M LL Sbjct: 92 GNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVELLGA 151 Query: 126 DINDPLAV----------------RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV 169 + PLA RD A+LE +Y GLR+SEL GL + +D V V Sbjct: 152 PLK-PLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLVRV 210 Query: 170 MGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKR--ISARNVQKRFAEW 227 GKG KER++PIG A+ I ++ + +FL + K +S R +Q+R ++ Sbjct: 211 RGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLKKY 270 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 GL+ + PHKLRHS+ATHML++ DLR VQELLGHA+L TTQ+YTH+ + L Y Sbjct: 271 LALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKRAY 330 Query: 288 DAAHPRA 294 D+AHPRA Sbjct: 331 DSAHPRA 337 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 168/294 (57%), Gaps = 7/294 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D+ ++ YL ER LS T Y+ LE ++ +E G + W Q D + ++ R Sbjct: 5 DLNLFIDYLVTERGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDL 64 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP---KNIDVDDMNRLL 123 G A+LA RL A++ +L + LK + + +PK R LP +VD + Sbjct: 65 GRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAF 124 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + +P +R+RA+LEV+Y +GLR+SEL L + +D ++ + V+GKGSK R +PIG+ Sbjct: 125 PASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGK 184 Query: 184 NAVAWIEHWL-DLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ + +L D+R L ++ +FLSK G+ ++ + + G++ ++HP Sbjct: 185 VALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKNIHP 244 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H LRHSFA+H+L DLR +QE+LGHA++STT+IYTH+D LA+++ HPR Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPR 298 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 163/298 (54%), Gaps = 13/298 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFAVRSRR 65 E +L +L++ + S T Y+R + + GL + + + ++ F+ Sbjct: 7 TETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASLYY 66 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 K L S+A +L+ALRS F +L+ + +K NPA GV PK P+ ++VD + LL Sbjct: 67 KKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLLKG 126 Query: 125 ---------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 + +A R+ A+LE++YG+GLR+SE + L++ + E G V V+GKG+K Sbjct: 127 ANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKGNK 186 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 ER P+ ++ +E WL +R + + + ALF+ GKR+ R + E ++ GL Sbjct: 187 ERLAPLSDTSIVALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQAGLP 246 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 PH LRHSFATH+LE +LR VQELLGHA LSTTQ YTH+ L YD AHP Sbjct: 247 LTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHP 304 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 170/294 (57%), Gaps = 3/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + +E +L+Y++VE+++S T Y L + ++ G++ W + + + Sbjct: 2 MRSHIESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEEL 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G ++SL +S++R F L +P+ + +PKA + LP ++ RLL Sbjct: 62 SQAGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLL 121 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + +DPL++RDRAMLE++YG G+R+SEL+GLD+ L E G + GKG + R +P+ Sbjct: 122 DSVPTSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVS 181 Query: 183 RNAVAWIEHWLDL--RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +++E ++ L G E +ALFL+ G R+S + K G+ + PH Sbjct: 182 SVAQSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATH+LE+ DLR +Q++LGHA+L+TTQ+YTH++ L VY HPRA Sbjct: 242 VLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 104/295 (35%), Positives = 171/295 (57%), Gaps = 5/295 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFAVRSRRK 66 ++ + YL+ E LS T+ Y R L+ +F + + L+ + + ++K Sbjct: 5 IKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKSIKKK 64 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-I 125 GL A +++ +L++++SF +L+ + E+ + ++ PK + LP + VD++ +L+ I Sbjct: 65 GLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVI 124 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D + L +R+ A+LE++YG+GLR+SEL+ + +K + ++ V V GKGSKER +PI A Sbjct: 125 DKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDMA 184 Query: 186 VAWIEHWL--DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN-NHVHPHKL 242 + I ++L DL + D LF++ GK +S K + + L+ V PH L Sbjct: 185 IIAIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPHTL 244 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RHSFATH+LE+ DLR +Q LLGH ++STTQIYTH+ L VY+ HPRAK Sbjct: 245 RHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKEN 299 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 171/288 (59%), Gaps = 5/288 (1%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L +L +++LS TL +Y+R +E I + + +Q+ + T V + + ++KG Sbjct: 10 FLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRAT 69 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDP 130 ++++ L+++RSF+ +L + + +P + + +PK + LP+ + ++ LL+ D Sbjct: 70 STISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDD 129 Query: 131 L-AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 L RD+AMLE++Y G+R+SEL+ LD+ ++LE + KG++ER +PIG +V + Sbjct: 130 LKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRC-NKGARERIVPIGSVSVNAL 188 Query: 190 EHWLDL-RDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 + +L R+L D ALF++ GKR++ + K ++ + +N + PH LRHSF Sbjct: 189 QEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHTLRHSF 248 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 A H+LE+ DLR +QE+LGH+++S+TQIY L + +Y HPRA Sbjct: 249 AAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 172/291 (59%), Gaps = 6/291 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++++L YL E+ LS T+ +Y+ L+ + + +E + C + + + + K Sbjct: 7 LKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLN-CKKDDIVQYLLNLKEKA 65 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 + S+A LS+L+ FF +++ + + +P +G+ +PK LPK +++D++ RLL + + Sbjct: 66 YSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSVML 125 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 +RD AMLE+MY +GLR+SELV L + ++ E+G + V GKG KER +PI + ++ Sbjct: 126 ESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQRSID 185 Query: 188 WIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 I+++L LR + + +FL+ G+ ++ + + G G+N V PH +RH Sbjct: 186 KIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVN--VTPHMIRH 243 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 SFATH+LE DLR +Q++LGH+++STTQIYT + L Y HPRAK Sbjct: 244 SFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRAK 294 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 166/288 (57%), Gaps = 8/288 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L + +E+ LSP ++ Y L + F + + V +R + + GL Sbjct: 19 FLNFCRIEKGLSPNSISAYSADLARFVQFTGD----VQEPPGVPEIRQYIDHLYQTGLSN 74 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIND 129 S+ L+ LR+F+ +L+ + ++ +P + + P+ + +PK ++++++ R++ D+ Sbjct: 75 RSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAK 134 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 PL +RDRAM+EV+Y +GLR+SEL L I LDLE + GKG+K+R +P+G+ AV + Sbjct: 135 PLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAV 194 Query: 190 EHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 +L+ L G LF++ G ++ + K A +G K G+ + + PH LRHSF Sbjct: 195 RAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHSF 254 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ATH+LE DLR VQ +LGHA++STTQIYTH+ L + + HPRA Sbjct: 255 ATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 Y RYL E+ L ++ +Y++ L + + + + D + ++ + G Sbjct: 15 YTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENIL-LVKVDRFTILDWLNYLQNSGKSN 73 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIND 129 S+ +S+LR FF +L +++ +P V+ PK HLP+ + ++ +L + DI+ Sbjct: 74 NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 L +R+RA+LE MY G R+SE+ L + L E G + +GKG K+R +PIG ++ +I Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYI 193 Query: 190 EHWLD------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + L+D E LFL+ G RIS + + K E IK G++ + PH LR Sbjct: 194 SKYFKESRPILLKD---KESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLR 250 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 HSFAT++LE+ DLR VQELLGH+++STTQIYTH+ +H+ Y+ HPRAK Sbjct: 251 HSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 149/246 (60%), Gaps = 7/246 (2%) Query: 56 VRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 +R +A G ++ +L++LRS F LV EL+ NPA +SAP+ + LP + Sbjct: 68 LRRYAAGLTEAGQAPTTVGRKLASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLK 127 Query: 116 VDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 ++ LLD I + LA+RDRA+ E+ Y +GLR ELV LD+ ++ + V V GKG+ Sbjct: 128 PVEVAALLDRIPADTALALRDRALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGA 187 Query: 175 KERRLPIGRNAVAWIEHWLD-LRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 K R +P G A+ I +LD R + D ALFLSK G+R+S +V++R W + Sbjct: 188 KTRIVPAGEPALKAIARYLDRARPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQA 247 Query: 232 -GLNNH--VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 G++ V PH LRHSFATH+LE+ DLR +QELLGHA++STTQ+YT ++ L S Y Sbjct: 248 AGVSTAGGVSPHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSAYA 307 Query: 289 AAHPRA 294 +HPRA Sbjct: 308 NSHPRA 313 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +++++RY+ VE+ S T+ +Y++ ++ F S G+ + VR F K Sbjct: 9 IDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDKK 68 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR-LLDID 126 S+A +LSALRSF +L+ + + NP PK LP + ++M LL + Sbjct: 69 YARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLALP 128 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 N PL RD+A++E++Y G+R+SE L + D S V V GKG KER +P+G+ AV Sbjct: 129 ANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMAV 188 Query: 187 AWIEHWL-DLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + +E ++ + R +D LFL+ G +S R+++K + + + + PH + Sbjct: 189 SAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQKKISPHAI 248 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+L + DLR VQELLGH +L TTQ+YTH+ + L +VY AHPRA Sbjct: 249 RHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 104/323 (32%), Positives = 176/323 (54%), Gaps = 35/323 (10%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASE----NGLQSWQQCDVT-MVRNFAVR 62 ++++L ++SVER LSP T+ +Y+ L N+ E N + Q D+ VR + + Sbjct: 13 IQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSSQ 72 Query: 63 S-RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + + LG ++A R++++ + +++S ++ ++P+ V APK HLP + + ++ R Sbjct: 73 AMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVER 132 Query: 122 LLD----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 ++D D +++RDRA++E +Y G R+SE VGL + +DL V + GKG K+R Sbjct: 133 VIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQR 192 Query: 178 RLPIGRNAVAWIEHWL-DLRDLFGSEDD------------------------ALFLSKLG 212 +PIG+ AV + +L + R + S +FL+K G Sbjct: 193 LVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRG 252 Query: 213 KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTT 272 K +S ++ + + G + +HPH LRHSFATH++ D+R VQELLGHA+++TT Sbjct: 253 KSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTT 312 Query: 273 QIYTHLDFQHLASVYDAAHPRAK 295 QIYTH+ L Y +HPRA+ Sbjct: 313 QIYTHISPDALMEAYVMSHPRAR 335 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 174/298 (58%), Gaps = 13/298 (4%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM----VRNFAVRSR 64 ER+ YL + R++SP T+ Y L +++ F S + + +Q + VR++ R+ Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTL 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +++A +A+R+F W + + L ++PA +S+P+A + LP +D D LL+ Sbjct: 67 ADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLN 126 Query: 125 IDINDPLA-----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 ++ A +R+ A+LE+ Y GLR+SE+ LDI L+ ++ V V+GKG+KER + Sbjct: 127 TARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNKERVV 186 Query: 180 PIGRNAVAWIEHWL--DLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P G A ++HWL L G +ALFL G RI R V+ + + G+++ Sbjct: 187 PYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVHD- 245 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+L+ DLR VQE+LGH++LSTTQ YTH+D L+++Y AHPRA Sbjct: 246 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7U3_9BACT Length = 319 Score = 179 bits (454), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 152/288 (52%), Gaps = 7/288 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL T + RY+ ++S+ + SP T LNY+ LE FA + G VR F Sbjct: 25 DLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFIRG 84 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL A S++ +LSALR F +L Q+ + ++P + PK P HLP+ + D +NRL Sbjct: 85 LSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVNRL 144 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVW--VMGKGSKERRLP 180 + A R+R +LE+ Y AGLR++ELV L K DL+ E W VMGKGSKER +P Sbjct: 145 ISAAGTIEPAARNRCLLELAYSAGLRVAELVSL--KWSDLDETERWITVMGKGSKERMVP 202 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 G+ A + + W SE +F K GK ++ R V R E + PH Sbjct: 203 YGQWAASALAEW--KAQCPPSEKGWVFPGKGGKSLTERTVH-RLVEAASQLAGTPGASPH 259 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 LRH FATHMLE ++ VQELLGH +L TTQ Y + + L YD Sbjct: 260 TLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYD 307 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/281 (37%), Positives = 157/281 (55%), Gaps = 6/281 (2%) Query: 17 VERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALR 76 V + +SP T Y L +N L W D++ V + + G S+A Sbjct: 29 VAQTVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDV---LIELTKVGKSPRSIARC 85 Query: 77 LSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDPLAVRD 135 LSALR F+ +L Q NP +PK R LPK++ +D+ L+ DI L +RD Sbjct: 86 LSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITTALGLRD 145 Query: 136 RAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD- 194 RAM EV+Y GLR+SEL+ L ++ ++L+ G + + GKG+KER +P+G+ A W+E +L+ Sbjct: 146 RAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYACDWVERYLNE 205 Query: 195 -LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLES 253 L+ S D LFL++ G +S +N + ++ + + PH LRH+FATH+L Sbjct: 206 ARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAELSPHTLRHAFATHLLNH 265 Query: 254 SGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 DLR VQ LLGH++LSTTQIYTH+ + +++ HPR Sbjct: 266 GADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPRG 306 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 20/303 (6%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ----------SWQQCDVTMVRNFA 60 +L YL+ ER+ S T+ NY++ E + +GL+ + + +R+F Sbjct: 28 FLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRDLRDFV 87 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM- 119 + +R+ +L +S LRSF+ + + + NP G++ PK + LPK + M Sbjct: 88 IEGQRR-FDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLTEQQMK 146 Query: 120 ------NRLLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 RLLD DI A RDR +E++YG GLR+SEL LD +D SG V+G Sbjct: 147 LLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSELTALDYGQIDFTSGVARVLG 206 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 KG KER P+G+ A+A + W + S + ++ +R+ R VQ + Sbjct: 207 KGRKERLCPLGKVALAVLVKWKNEYARDTSPAAPVLVTPEHERMPVRQVQLMLKRYLALA 266 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 GL + PHKLRHS+ATH+L + DLR VQELLGHA+L+TTQIYTH+ L +YD AH Sbjct: 267 GLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDIYDKAH 326 Query: 292 PRA 294 PRA Sbjct: 327 PRA 329 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 174/296 (58%), Gaps = 7/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + D+ R+ YL E+ S T+++YQR L+ + ++ S G++ Q T + ++ ++ Sbjct: 11 IQQDMRRFADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQM 70 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++G +S++ ++++R+FF +LV + +P+ + AP + P+ + +++ +LL Sbjct: 71 EKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLL 130 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS-KERRLPI 181 + +++ +RD+AMLE++Y G+R+SEL+ + + +++ G +V+ + S KER +P Sbjct: 131 NQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMG--YVLCRDSDKERVIPF 188 Query: 182 GRNAVAWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A ++ +L+ L G E + LF++ GK +S + K + + G+ + Sbjct: 189 GTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDIT 248 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSF H++++ DLR VQE++GH+++STTQIY ++ + + +Y AHPR Sbjct: 249 PHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPRG 304 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 167/294 (56%), Gaps = 8/294 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA--SENGLQSWQQCDVTMVRNFAVRSRR 65 + ++ YL +ER LS ++ Y+ + + F +E + Q ++ F Sbjct: 7 IRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQ-VKGKHIQLFLEYITE 65 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR-LLD 124 G+ A S A LS ++SFF +L+ + +P+ + +PK R LP + ++ + LL Sbjct: 66 LGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ID++ P +R+RAMLE +Y GLR+SEL L I +L + G V V+GKG+KER +PIGR+ Sbjct: 126 IDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRD 185 Query: 185 AVAWIEHWL-DLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +I + ++R D+ ++ +FL++ G ++S V +K GL V PH Sbjct: 186 ARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSPH 245 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH++E DLR VQE+LGH +++TT+IYTHLD +L + HPR+ Sbjct: 246 TFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteriales RepID=C6Y269_PEDHD Length = 294 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 7/293 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE +L YL E++ S T+ +YQ L +F + + +RNF V Sbjct: 3 VEHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVALMEDE 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--- 124 + S+ +LSALRSF+ +L+ +N L +NP V APK P+ LP +D ++ LLD Sbjct: 63 ISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLLLDSEE 122 Query: 125 -IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D + P ++RD+ ++E ++G G+RL+EL+ L ++ + VMGK SKER +PIG+ Sbjct: 123 FFDGSFP-SLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIVPIGK 181 Query: 184 NAVAWIEHWLDLRDL--FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 +++L+ L F ++ LF++ G + + + + + PH Sbjct: 182 TLREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKKSPHV 241 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHS+AT +L DL ++ELLGHA+L+ TQ+YTH + L ++Y AHP+A Sbjct: 242 LRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHPKA 294 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 155/281 (55%), Gaps = 6/281 (2%) Query: 17 VERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALR 76 V + +SP T Y L L W D+ V + + G S+A Sbjct: 29 VAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDV---LIELTKAGKSPRSIARC 85 Query: 77 LSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDPLAVRD 135 LSALR F+ +L Q + NP +PK R LPK++ D+ L++ DI+ L +RD Sbjct: 86 LSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDISTTLGLRD 145 Query: 136 RAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWL-- 193 RAM EV+Y GLR+SEL+ L ++ ++L+ G V + GKG+KER +P+G+ A WIE +L Sbjct: 146 RAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYACDWIEKYLAE 205 Query: 194 DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLES 253 L+ S D LFL++ G +S +N + ++ + + PH LRH+FATH+L Sbjct: 206 SRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRHAFATHLLNH 265 Query: 254 SGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 DLR VQ LLGH++LSTTQIYTH+ + +++ HPR Sbjct: 266 GADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPRG 306 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 166/302 (54%), Gaps = 7/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNF 59 M + + +++Y YL ERQ S +TL Y+ + +NF S+NG + + D VR + Sbjct: 1 MNQITSTMKKYEEYLQAERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIY 60 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + L S+A ++S+LRSF+ +L+ + K NP + + + LP+ + ++ Sbjct: 61 LNNLYERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEV 120 Query: 120 NRLL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L D + +R+ A++E++Y G+R+ E+ L +D S V + GKG K+R Sbjct: 121 IEYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180 Query: 178 RLPIGRNAVAWIEHWLDLRDL----FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 +P G+ A+A ++ +L R+ F + +F++ G++++ + + + L Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKL 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++HPH LRHSFATH+L + D+R VQELLGHA+LSTTQIYTH+ ++L Y R Sbjct: 241 TANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDR 300 Query: 294 AK 295 AK Sbjct: 301 AK 302 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/297 (35%), Positives = 163/297 (54%), Gaps = 17/297 (5%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L +L +ER L+ ++ Y+R L + F+ G +S + D + +F + R L Sbjct: 15 FLNHLQIERGLAANSIAAYRRDL---VKFSIFLGSKSLSEVDSNAINDFEISLREAKLSV 71 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND- 129 AS+ S LRSFF L Q A+P ++ K+ R LPK + + + ++D+ + Sbjct: 72 ASINRVDSTLRSFFKHL-QQEYGYADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREG 130 Query: 130 -PLAVRDRAMLEVMYGAGLRLSELVGL---DIKHLDLESGEVWVM---GKGSKERRLPIG 182 P+ RD+AMLE++Y +G R+SEL+G+ D+ +D G+V + GKG+KER +P+G Sbjct: 131 QPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPLG 190 Query: 183 RNAVAWIEHWL-----DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A +E++L DL ALFL+ G RIS ++ + + G+ HV Sbjct: 191 SFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGITEHV 250 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH RHS+ATH+L D+R VQELLGHA+++TTQIYT + + Y HPRA Sbjct: 251 SPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRA 307 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 101/295 (34%), Positives = 167/295 (56%), Gaps = 8/295 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + LHT ++ + +L + S T+ Y+ L +A + ++ + +R + Sbjct: 20 SKLHTLIDDFCEHLDLVVGRSAATIRGYRSDL-----YAMADTIEDIDNFSLPTLRQWLG 74 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +G A+LA R +++++F W LKA+ A + +PK R LPK + Sbjct: 75 IAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGD 134 Query: 122 LLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 ++ N+ +RD A+LE++Y G+R++EL G+D+ +D + V V+GKG+KER + Sbjct: 135 FVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERVV 194 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G +A + +WLD+RD + ALF+ G+RI+AR V +R + K +H+ P Sbjct: 195 PFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQV-RRIVDRAAKVTGVDHLSP 253 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+ ATH+L+ DLR VQELLGH+++ TTQIYTH+ + L ++ AHPRA Sbjct: 254 HSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 160/290 (55%), Gaps = 3/290 (1%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 E +L L VER S TL +YQ L F + LQ + + RN+ L Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ-LKTFEYRDARNYLSYLYSNHL 64 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDI 127 S++ ++S LR+F+++ ++ +E NP + PK ++LP+ ++M L ++ Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + +RDR +LE++Y G+R+SELV + + +D + V V+GKGSKER +P G Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 188 WIEHWLD-LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 IE++L+ + + D L L+ G+ I+ R V+ + + + +HPHKLRH+F Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 ATH+L DLR VQ LLGH NLSTT YTH+ Q L VY AHPRAK+ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKK 294 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 10/292 (3%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 +++ YL+VER + T+ +Y+R L + ++F E L S D+ F R GL Sbjct: 72 QWITYLTVERGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEA---FLQSLGRHGLA 128 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND 129 S+ LS +R F + + + + A ++ P P+HLP + VD++N L++ D Sbjct: 129 VTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGD 188 Query: 130 -PLAVRDRAMLEVMYGAGLRLSELVGL---DIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 +A+R++A+LE++YG G R+SE++ L DI L+ G + + GKG K+R +P+G +A Sbjct: 189 SAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHA 248 Query: 186 VAWIEHWL--DLRDLFGSEDDALFLS-KLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 ++ +L L + ALFL+ + GK +S ++ + + + G+ + PH L Sbjct: 249 RQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTL 308 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE D+R VQELLGHA+++TTQIYTH+ L +++ AHPRA Sbjct: 309 RHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 107/311 (34%), Positives = 169/311 (54%), Gaps = 23/311 (7%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V ++L ++ VER LS T+ Y L +++ E G+ V + G Sbjct: 8 VRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDSG 67 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--- 124 A S A RL+++ +F + +S++ + + A V APK LP + VD++ RL+D Sbjct: 68 ESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMDSIP 127 Query: 125 -------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 +DP+ +RD+A+LE MY G R+SE G+D+ +DL+ +MG Sbjct: 128 LSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLMG 187 Query: 172 KGSKERRLPIGRNAVAWIEHWLDL-------RDLFGSEDDALFLSKLGKRISARNVQKRF 224 KGSK+R +P+G A + +L + +E A+FL+K GKR+S ++V + Sbjct: 188 KGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVWEII 247 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 G + + +HPH LRHSFATH+++ D+R VQELLGHA+++TTQIYTH+ ++L Sbjct: 248 RTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLI 307 Query: 285 SVYDAAHPRAK 295 Y AHPRA+ Sbjct: 308 EAYLTAHPRAR 318 >UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1G4_9MICC Length = 358 Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/299 (34%), Positives = 162/299 (54%), Gaps = 12/299 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++R+ R+L E+ S T+ +Y LE + + G++ D + +R + + Sbjct: 60 LDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSLHLRQ 119 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-- 125 +++A R S LR+FF W + + ANP +G+ PK HLP + + MN+LL Sbjct: 120 AARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLLTTLQ 179 Query: 126 -----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 D D +R A++EV+Y +G+R+SEL GLD++ +D + V V+GKG+KER +P Sbjct: 180 ERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVP 239 Query: 181 IGRNAVAWIEHWLDL-RDLFGSED----DALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +G A+ + W+ R + E ALF+ G R +AR +++ Sbjct: 240 LGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQ 299 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHS ATH+++ D+R VQELLGH++L+TTQIYTH+ + LA Y AHPRA Sbjct: 300 ASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 358 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 100/297 (33%), Positives = 168/297 (56%), Gaps = 9/297 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNFAVRSRR 65 V+ Y RYL +ER SP TL+ YQ L +++F + Q DV + +++FA + Sbjct: 12 VKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQ---QEISPLDVRLEDLQHFAGQLHE 68 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 +G S A LS +RSF+ +LV ++ +P + + +P+ HLP+ + ++++ + + Sbjct: 69 HDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIENS 128 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ID++ P R++A++EV++ GLR+SELV L + +L L+ G + V GKG+KER +PI Sbjct: 129 IDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPISPK 188 Query: 185 AVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+ + W R+L E D +FL++ G ++ + + G+ + PH Sbjct: 189 AIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQKTISPHT 248 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LRHSFAT +L+ DLR +Q +LGH ++ TT+IYTH+D L HPR + + Sbjct: 249 LRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPRNAKDR 305 >UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NTN2_9MICC Length = 422 Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 14/300 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++R+ R+L E+ S T+ +Y LE + + G++ D +++R + + Sbjct: 124 LDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSLHLRQ 183 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-- 125 +++ R S LR+FF W + + ANP +G+ PK HLP + + MN+LL Sbjct: 184 AARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQ 243 Query: 126 -----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 D D +R A++EV+Y +G+R+SEL GLD++ +D + V V+GKG+KER +P Sbjct: 244 ERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVP 303 Query: 181 IGRNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +G A+ + W+ R + E ALF+ G R +AR +++ ++ N Sbjct: 304 LGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRL-LRTVENT 362 Query: 236 HVH-PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHS ATH+++ D+R VQELLGH++L+TTQIYTH+ + LA Y AHPRA Sbjct: 363 QASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 422 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 176 bits (447), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 121/313 (38%), Positives = 163/313 (52%), Gaps = 23/313 (7%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNF 59 T + V YL+++ VER L+ TL Y+R L + + G Q Q D+T V F Sbjct: 51 TKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQ--QPGDITRHHVTGF 108 Query: 60 AVRSRRKG------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKN 113 VR+ G LG S A + A+R + + ++PA V P A + LPK Sbjct: 109 -VRALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKA 167 Query: 114 IDVDDMNRLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHL-----DLESGEV 167 I VD++ R+L+ D +RDRA+LE +Y G R+SE VGLD+ + D E G Sbjct: 168 ITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPA 227 Query: 168 WV--MGKGSKERRLPIGRNAVAWIEHWL----DLRDLFGSEDDALFLSKLGKRISARNVQ 221 V GKGSKER +P+G +E +L L G ALFL+ G RIS ++ Sbjct: 228 IVRLFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAW 287 Query: 222 KRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 281 K + V PH LRHSFATH+LE D+R VQELLGHA+++TTQ+YT + Sbjct: 288 TILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTAD 347 Query: 282 HLASVYDAAHPRA 294 L VY AAHPRA Sbjct: 348 TLREVYAAAHPRA 360 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 176 bits (447), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 162/292 (55%), Gaps = 10/292 (3%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D + +LRY +ER+LSP T +Y++ L+ + + D R + K Sbjct: 6 DRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPY---DAQTARRYLYVLYEK 62 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPA-KGVSAPKAPRHLPKNIDVDDMNRLLDI 125 L A++++ ++S + F ++ E P +++PK + LP ++ +LL+ Sbjct: 63 QLAASTVSQKVSCFKQFGKFMA--REQGGEPLFHDLTSPKKKQSLPTFAVPTEVEQLLEA 120 Query: 126 DI--NDP-LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 +DP L RD A++EV+YG G+R++EL G+++ D V VMGKG KER +PIG Sbjct: 121 ASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIG 180 Query: 183 RNAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + AV ++ +++LR G + ALFLS+ G R++ ++ G++ + PH Sbjct: 181 QYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHS 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 LRHSFAT +LE DLR VQELLGH +LSTT YTH+ + L S+Y A HPR Sbjct: 241 LRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 102/292 (34%), Positives = 169/292 (57%), Gaps = 6/292 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ +L +E+ LS T+ +Y+ L A+ ++ +N L S + D ++ F KG Sbjct: 7 IDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDL-SLETLDAVDLQGFLGERLEKG 65 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 A S A LSA+R F +L + +P+ +S+PK P LPK + ++ LL+ + Sbjct: 66 YKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTPN 125 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + PL +RD+AMLE++Y GLR++ELV L I+++ ++ G V V+GKG+KER +P+G A Sbjct: 126 VEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEEAA 185 Query: 187 AWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN-NHVHPHKL 242 W+ ++ L G D +F S+ ++++ + R + I ++ + + PH L Sbjct: 186 YWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHVL 245 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RH+FATH++ DLR VQ LLGH +LSTTQIYTH+ + L +++ HPR Sbjct: 246 RHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 161/283 (56%), Gaps = 6/283 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 ++R++++ S T + Y+R + ++F Q+ + D M ++ L + Sbjct: 10 FMRHIAITNTSSEHTNVAYERDIRQFLDFIEG---QAVHEVDRLMAYDYLNMLYDSNLSS 66 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDP 130 +S+A ++S LRSF+ +L L NP + + + RHLP + D++ LL Sbjct: 67 SSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLSCDESV 126 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 L VR++ M+E+MY GLR+SE+V L I LDL + V+GKG+KER+L + V + Sbjct: 127 LGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYESLVPKLW 186 Query: 191 HWLDL-RDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 +L+L R F S+ +A+FL++ GK ++ R +Q G GL +HPH LRHSFA Sbjct: 187 SYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHMLRHSFA 246 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 TH+L++ LR VQ LLGH +LSTTQIYTH+ Q + VYD A Sbjct: 247 THLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/322 (34%), Positives = 162/322 (50%), Gaps = 32/322 (9%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M T E YL Y+ +ER S TL +Y L ++F + + +V + Sbjct: 1 MDTFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYI 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +G+ ++++ +S+++ F ++V + + +P + PK HLP + D + Sbjct: 61 AHLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQII 120 Query: 121 RLLDIDINDPLA-----------------------VRDRAMLEVMYGAGLRLSELVGLDI 157 LLD DP RD+A+LE++YG GLR+SEL GL+ Sbjct: 121 HLLD----DPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQ 176 Query: 158 KHLDLESGEVWVMGKGSKERRLPIGRNAVA----WIEHWLDLRDLFGSEDDALFLSKLGK 213 + + V V GKGSKER +P A+ + W L DA+FLS G Sbjct: 177 GDVLVSDELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGT 236 Query: 214 RISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQ 273 RIS + V +G G+ +HPH LRHS+ATHMLE +LR VQELLGHA++STTQ Sbjct: 237 RISRQAVFSLVERYGSYVGIKG-LHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQ 295 Query: 274 IYTHLDFQHLASVYDAAHPRAK 295 +YTH+D H+ S Y AAHPRA+ Sbjct: 296 LYTHIDLTHIRSEYMAAHPRAQ 317 >UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID=B2GFZ3_KOCRD Length = 378 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 157/294 (53%), Gaps = 13/294 (4%) Query: 14 YLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASL 73 +LS+ER S T+ +Y + + + E+G+ D +R + + ++GL +S+ Sbjct: 85 HLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQRGLARSSV 144 Query: 74 ALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-------- 125 + ++A+ +FF W V L+ +PA G+ P+ RHLP + + +LD Sbjct: 145 SRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALGDVALGP 204 Query: 126 ---DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + LA RD A+LE++Y G R+SELVGLD H+D + + GKG K+RR+P G Sbjct: 205 HEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQRRVPYG 264 Query: 183 RNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A + W R +E DA+F+ G RI R ++ A+ + PH Sbjct: 265 ERAGDALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDVPDTSARGPH 324 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHS ATH+L+ DLR VQELLGHA ++TTQIYTH+ + + Y AHPRA Sbjct: 325 SLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAHPRA 378 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 173/306 (56%), Gaps = 15/306 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T VE +L+YL ER S T Y L +N+A L W++ ++ + F + Sbjct: 1 MQTLVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFE 60 Query: 64 RRK-----------GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 R + L + S+ L ++ALR+F+ + ++ L N A+ +S P+ + LPK Sbjct: 61 RERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPK 120 Query: 113 NIDVDDMNRLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + ++ +LL ++I + P + D+A+LE+ Y +GLRL+EL + ++ L LE G + V+G Sbjct: 121 ALSDLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIG 180 Query: 172 KGSKERRLPIGRNAVAWIEHWLD--LRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWG 228 KG+KER +P+G AV ++ +L+ L A +FL+ G +A + KR + Sbjct: 181 KGNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRV 240 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 + G+ +V PH LRHSFATH+LE DLR +QELLGHAN+STT+IYTH+ L V+ Sbjct: 241 KRSGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHR 300 Query: 289 AAHPRA 294 HPR Sbjct: 301 KFHPRG 306 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 162/286 (56%), Gaps = 6/286 (2%) Query: 14 YLSVERQLSPITLLNYQRQLEAIINFASENGLQSW-QQCDVTMVRNFAVRSRRKGLGAAS 72 YL +ER LS ++ Y R +E ++ + +Q Q ++ +++ G+ A S Sbjct: 30 YLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWIATLGMTATS 89 Query: 73 LALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-DIDINDPL 131 A +S +++F+ +L ++ ++ +P + APK R LP + +++ +++ I P Sbjct: 90 QARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKAGTPE 149 Query: 132 AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEH 191 R+RA+LE MY GLR+SE+ L I L ++G + V+GKG KER +PIG +AV +I Sbjct: 150 GQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIGSDAVKYINI 209 Query: 192 WLD-LR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + D +R + ++D LFL++ G ++ + E G++ V PH RHSFA Sbjct: 210 YKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVSPHTFRHSFA 269 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 TH++E DLR VQE+LGH +++TT+IYTHLD ++L HPR Sbjct: 270 THLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/311 (36%), Positives = 173/311 (55%), Gaps = 19/311 (6%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L T ++ YL YL +ER ++ TL +Y+R L S+ G++ + V F V Sbjct: 6 LQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVAL 65 Query: 64 RR-------KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 RR L A S A L A+R + V++ + + A+ V P R LPK++ V Sbjct: 66 RRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTV 125 Query: 117 DDMNRLLDI-----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 D++ LL+ + PL +R+RA+LE++Y G R+SE VGLD+ +D ++ V + G Sbjct: 126 DEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQG 185 Query: 172 KGSKERRLPIGRNAVAWIEHWL-----DL--RDLFGSEDDALFLSKLGKRISARNVQKRF 224 KG K+R +P+GR AV ++ +L DL R A+FL+ G R+S ++ + Sbjct: 186 KGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVL 245 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 + G+ + V PH LRHSFATH+LE D+R VQEL+GHA+++TTQIYT + Q L Sbjct: 246 QDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALR 305 Query: 285 SVYDAAHPRAK 295 V+ AHPRAK Sbjct: 306 EVWAGAHPRAK 316 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 169/296 (57%), Gaps = 13/296 (4%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L YL VE+ LS +++ Y + ++ F ++ +S VR+F L Sbjct: 14 FLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRK-RSLDAAKRQDVRDFLDSLFSNQLDG 72 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM-------NRLL 123 ++A +LS+ R F+ +L+ ++ +P + +P+ + LPK++ D++ R+L Sbjct: 73 RTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQGPPRVL 132 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D + LA+RDRAMLEV Y LR+SE++G+ ++ L+ G + V GKG KER +P+G+ Sbjct: 133 DTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERIVPLGQ 192 Query: 184 NAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 +A+ ++ +L+ R++ G LF+ K +++S + V + + Q H PH Sbjct: 193 SALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVS--AASQASGRHASPH 250 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHS ATHM+E+ DLR VQ +LGHA++STTQIYTHL L V+ HPR+KR Sbjct: 251 MLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKR 306 >UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alphaproteobacteria RepID=Q2RV24_RHORT Length = 330 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 158/304 (51%), Gaps = 12/304 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINF-----ASENGLQSWQQCDVTMV 56 +DL + +L +L ER+ S TL Y R L A + F E GL + Sbjct: 29 SDLRPSLVAWLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADF 88 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID- 115 R + +GL S+A LS LR+ F WL + L+ + +P+ P+ +PK + Sbjct: 89 RAYMAARLTQGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSE 148 Query: 116 ---VDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVW-VMG 171 +D ++ D+ + LA RD A+ ++YG GLRL E LD+ DL SGEV + G Sbjct: 149 SEALDALSVASDLQDDPWLAKRDLALFTLLYGCGLRLGE--ALDLDRGDLPSGEVMRITG 206 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 KG KER +P+ V + +L G DD LFL GKR++ VQ++ Sbjct: 207 KGRKERLVPLLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFL 266 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 GL PH LRHSFATH+L GDLR +QELLGHA+LSTTQ YT +D L ++ A H Sbjct: 267 GLPETATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATH 326 Query: 292 PRAK 295 PRA+ Sbjct: 327 PRAR 330 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 169/302 (55%), Gaps = 12/302 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 ++L ++ ++ ++S LSP T+ Y + LEA ++ + + + R++ Sbjct: 8 SELLAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDL-RSYLA 66 Query: 62 RSRRKGLGAASLALRLSALRSFFDWL-VSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 RR G + ++A LSALRSFF WL S + A P V APK R LP + +++ Sbjct: 67 EFRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATV-APKQRRELPHVLTAEELA 125 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L D D++ P+ +RD AMLE+ G R+SEL L++ + + +V ++GKGSKER + Sbjct: 126 ALFDAPDLSCPVGLRDAAMLELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIV 185 Query: 180 PIGRNAVAWIEHWLD------LRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 P+ A+ E +L+ LR L G A+F+S G+ +++ ++ RF K Sbjct: 186 PLYARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKA 245 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 G+++ + PH +RH+FAT +L DLR VQELLGHA+LSTTQIYTHL L S AH Sbjct: 246 GISSDITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAH 305 Query: 292 PR 293 PR Sbjct: 306 PR 307 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 144/247 (58%), Gaps = 5/247 (2%) Query: 52 DVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 D+ ++R + R L A +L +L+A+R F +L+ + + N A V PKAP+ LP Sbjct: 58 DLLILREWLAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLP 117 Query: 112 KNIDVDDMNRLLD----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 + + D +N L+D +++ P RDRA+ E++YG G+R+SEL GL+++ +D G + Sbjct: 118 EVMTADQVNSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWL 177 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEW 227 V GKG KER++P+ A +E +L R + E A+F++ R++ R + + Sbjct: 178 RVRGKGKKERQVPLPGQAAQSLERYLAERPV-AREQPAVFVNHRRARLTTRGISGIVKLY 236 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 + +HPH RH++ATH+L DLR +QELLGHA LSTTQ YT + L +VY Sbjct: 237 ATYLSNDPGIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVY 296 Query: 288 DAAHPRA 294 D AHP+A Sbjct: 297 DKAHPKA 303 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 17/299 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ +L +L VER LSP+T+ +YQ L I + ENG+ + + + ++ Sbjct: 8 LDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGIDLKDLQPEKLDEFLTLTAGQEE 67 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 S+A S+LR F ++ Q E + ++ PK +LP+ + ++++ + + Sbjct: 68 YSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEIDSVFESAA 127 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG----R 183 N +RD A++E+MY GLR+SE +G+ + +DLE+ + +GKG+K+R +P+G Sbjct: 128 NGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLVPLGSKAKE 187 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQ----GLNNHVHP 239 N AWIE + R L D + L+ GK +S R W I Q L+ V P Sbjct: 188 NLRAWIE---EGRPLTHPTTDNIILNAHGKPMS------RMGAWKIVQLHTMHLSKQVSP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 H RHSFATH LE+ DLR +QELLGHA++STTQIYTH+D + + + HPR GK Sbjct: 239 HTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPREMGGK 297 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 151/292 (51%), Gaps = 2/292 (0%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D ++ +L Y+ + R S T Y+R +E I + + + +W++ D + + Sbjct: 2 DYKKSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTT 61 Query: 63 SRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R+K L +S LS+LRSFF +L + NP K R LP+ + VD + Sbjct: 62 LRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQD 121 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD D+ D +R+R ++E++Y GLR+SE + I+ + V VMGK SKER +P Sbjct: 122 LLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVP 181 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 + + +L F D F GK IS R++Q + G + L +HPH Sbjct: 182 FYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 LRHSFATH+L++ DLR VQ LLGH NLSTTQIYTH+ L V HP Sbjct: 242 VLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHP 293 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 172/293 (58%), Gaps = 11/293 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF-AVRSRRKG 67 ER+LR+L +ER LS TL +Y+R + + + G +S + + + +F A ++ +G Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWL---GARSVTELNTGDIESFMASLAKGEG 70 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L A++ A L+A+R+F +L + + + A V+ P +PK + + ++ +L+ Sbjct: 71 LAASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCP 130 Query: 128 NDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 ND A +RDRA+LE++Y G R+SEL+GLD+ +D + V GKGSKER +P+G Sbjct: 131 NDDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGD 190 Query: 184 NAVAWIEHWL-DLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+ ++H+L +R F + A LFL++ G R+ ++ + K G+ V PH Sbjct: 191 PALDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAG-VSPHS 249 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE D+R VQELLGH+N+ TTQIYT + HL + +HPR+ Sbjct: 250 FRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPRS 302 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 163/306 (53%), Gaps = 17/306 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNFAVRSRR 65 +E +L +++V++ S T Y L + F + Q VT ++ F R Sbjct: 67 IEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLFR 126 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 KG +S+A +L+A RSFF + + ++ N A V P+ + P+ ++VD+ LLD Sbjct: 127 KGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLDS 186 Query: 126 DIN-----DPLA---------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 P+A RD A+ E++YG+GLR+SE + LD+ + L S + VMG Sbjct: 187 ATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVMG 246 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIK 230 KGS+ER P+ + + ++ WL+ R L D+A LF+ G R++ R + + Sbjct: 247 KGSRERLAPLSDTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCRR 306 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 GL V PH LRHSFATH+LE+ D+R VQELLGH L+TTQ YT + + L YD A Sbjct: 307 AGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQA 366 Query: 291 HPRAKR 296 HPR+ + Sbjct: 367 HPRSGK 372 >UniRef50_A6G048 Site-specific recombinase, phage integrase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G048_9DELT Length = 346 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 166/308 (53%), Gaps = 25/308 (8%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L +L ER+LSP T Y R +E I+ + + D+ + A + G A Sbjct: 8 FLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLRLREVRAYLAELHGKRA 67 Query: 71 AS-LALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND 129 AS + +LSALR+F ++ + + N + PK R LP + V+D+ ++D + Sbjct: 68 ASTVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMIDGE-QR 126 Query: 130 PLAV--RDRAMLEVMYGAGLRLSELVGLDIKHLDLE-SGEVW------VMGKGSKERRLP 180 P AV RDRA+LEV+YGAGLR+SE V L++ L E SG+ + GKG+K+R +P Sbjct: 127 PGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQGKGNKDRVVP 186 Query: 181 IGRNAVAWIEHWLDLRDLFGSED--------------DALFLSKLGKRISARNVQKRFAE 226 +GR + WLD R+ + A+FL G R+S R ++ Sbjct: 187 LGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLSTRVAREVVYR 246 Query: 227 WGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASV 286 G V PH LRHSFATH+L+S DLR +Q +LGHA+LSTTQ YTHLD HL S+ Sbjct: 247 RCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTHLDMGHLFSL 306 Query: 287 YDAAHPRA 294 Y+ AHPRA Sbjct: 307 YERAHPRA 314 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 161/293 (54%), Gaps = 9/293 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF-ASEN-GLQSWQQCDVTMVRNFAVRSRR 65 +ER+L L +E L+ TL+ Y+R L+A+ +F AS N L Q+ DV + + Sbjct: 7 MERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVL---EYIGELAQ 63 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 K L +++A +LSA+R F LV + +P GV PK R LP + + LL Sbjct: 64 KSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALLYA 123 Query: 126 -DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 D + L +RD AMLE+MY GLR+SELV L + LD E+G V V+GKG+KER +P+G Sbjct: 124 PDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPMGEA 183 Query: 185 AVAWI---EHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + H L G + LFLS G ++ N + + + + PH Sbjct: 184 ATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKPLSPHG 243 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +RH+FATH+L DLR VQ +LGHA++STT+IYTH+ L ++D HPR Sbjct: 244 IRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPRG 296 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 164/300 (54%), Gaps = 9/300 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + D ++ +L+ +R LS T +Y R L+ I++ + ++Q + + Sbjct: 1 MERDAASFISFLAGQRGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G A++ LR+FF +L+ + ++ +P + PK + P+ + V++ RLL Sbjct: 61 KDLGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLL 120 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D PL +RD+AMLE++Y G+R+SEL+ L+ ++LE + G+ KER LP G Sbjct: 121 EAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFG 180 Query: 183 RNAVAWIEHWLDLRD------LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 W++ L LR+ L E+ ALF ++ G RIS + K ++G + G+ + Sbjct: 181 GVTAEWLD--LYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSD 238 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 + PH LRHSFA H+LE D+R VQELLGH++ ST Q+Y +L +VYDA HPR R Sbjct: 239 ITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPRTMR 298 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 161/297 (54%), Gaps = 16/297 (5%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L +E +L YLS+ER SP T Y+R L ++F +E G +V V F Sbjct: 10 LDPRMESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPP-EVDTVSLFLASL 68 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R +G +S+ + ++SF +L E+ +P K P P +P + ++ RLL Sbjct: 69 RSQGAAKSSVQRAAACIKSFSRFL---GEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLL 125 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D P +RDRAM+E++YG GLR SEL L +K LDL SG V V GKG K R LP+ Sbjct: 126 EATAGDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLV 185 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLG----KRISARNVQKRFAEWGIKQGLNNHVH 238 + +E +L +R G+ +F G + + + +Q+R + I + +H Sbjct: 186 GETRSALERYLKVR---GTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAA---SRLH 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHS ATH+L DLR +Q LLGH+++ TT++YTH D + L VYD +HPRA+ Sbjct: 240 PHILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRAQ 295 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 154/283 (54%), Gaps = 1/283 (0%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 Y Y+ +E++LS T+ +Y R L +F ++ + M+ + +G Sbjct: 15 YRVYIKLEKRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGREK 74 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDIND 129 S A LS +RSF+++L+ + + + P + + PK RHLP + V++++R++ +D + Sbjct: 75 TSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTST 134 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 RD AMLEV+Y GLR+SEL L + L G + V GKG K+R +P+ A I Sbjct: 135 VKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAAREKI 194 Query: 190 EHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATH 249 + +LD R S D +FL+ G +++ V E + G++ H+ PH RHSFATH Sbjct: 195 QRYLDDRATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFATH 254 Query: 250 MLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 +LE +R VQE+LGH ++ TT+IYTHL+ HL + P Sbjct: 255 LLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297 >UniRef50_A5VJJ3 Tyrosine recombinase XerD subunit n=8 Tax=Lactobacillus RepID=A5VJJ3_LACRD Length = 297 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 170/301 (56%), Gaps = 14/301 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ +V +L +L ERQLS TL++YQR LE + + + G+ WQQ D ++ + Sbjct: 1 MNNEVAAFLAFLKDERQLSDNTLMSYQRDLEQTVTYLEDRGIVDWQQVDHYLLIDLLNSL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGV------SAPKAPRHLPKNIDVD 117 R++G +++ +S+LR F+ +++ + L NP + + + P AP L + Sbjct: 61 RQQGKANSTINRVISSLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEK---- 116 Query: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ +LL + D++ P+ +RDRA+LE+M G+R+SE++ LD+ L L+ + + GK +E Sbjct: 117 EIEQLLAVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERE 176 Query: 177 RRLPIGRNAVAWIEHWLD---LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 R +P+ + AV W+ +LD R L + +FL+ G ++ + + K+ EW + + Sbjct: 177 RMIPLSQPAVKWLTDYLDRGRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKI 236 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V P +R+SFA H++E+ D++ +QE+LG+ + Q Y + Q L++ Y HPR Sbjct: 237 KKEVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPR 296 Query: 294 A 294 A Sbjct: 297 A 297 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 167/290 (57%), Gaps = 9/290 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++R L L ++R+LS TL +Y+R LE I S G Q+ + D + + A G Sbjct: 23 IDRLLETLWLDRRLSRNTLESYRRDLEKIARRLSLCG-QTLRDADES---DLAAAVYVAG 78 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 +S A LSA + + W+ + NP + + PK +++P I ++RLL D Sbjct: 79 EERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPD 138 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + P +RD+A+LE+MY GLR+SE V L +LDL+ G + +GKG+K+R +P+GR +V Sbjct: 139 TDTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVPMGRESV 198 Query: 187 AWIE-HWLDLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 W+E ++ + R L G DALF+S+ IS + E+ + G+ H+ PH LR Sbjct: 199 YWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGI-EHISPHSLR 257 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H+FATH+++ DLR VQ++LGHA+L+TTQIYTH+ L SV H R Sbjct: 258 HAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 164/296 (55%), Gaps = 14/296 (4%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS-----RR 65 +L YL +ERQ S T Y+ + + F S G Q+ + ++ + +F VR Sbjct: 13 FLDYLRIERQYSLETQKAYEGDIAEFLTFLS--GTQATKSIVLSNITSFDVRVFLSELYE 70 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 KG G+ ++A ++S+LRSF+ +L++ + NP G+ K +HLP+ ++ ++ D+ Sbjct: 71 KGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKMFDV 130 Query: 126 DIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + D L +R+ +LE++YG G R+SE+ + ++++D + V + GKG+K R +P GR Sbjct: 131 VMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVPFGR 190 Query: 184 NAVAWIEHWLDL-RDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A + +L R + S+ + LFL++ G ++ ++ + G K GL V Sbjct: 191 YAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQEVT 250 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H RH+FAT +L + DLR VQ+LLGH++LSTTQIYTH+ L Y PRA Sbjct: 251 AHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRA 306 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 104/293 (35%), Positives = 158/293 (53%), Gaps = 16/293 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQ---RQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +E + YL + S T+ Y+ R + A I +E L + +R + R+ Sbjct: 28 IEDFCDYLILVVGRSDATVRGYRSDLRHMAATIPDLTEFTLPN--------LRAWLGRAV 79 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK---NIDVDDMNR 121 +G A+LA R ++++SF W V + + A + +PK R+LP+ + + Sbjct: 80 EEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMG 139 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 D D RD A+LE++Y G+R+SEL GLD+ +D V V+GKG KER +P Sbjct: 140 SAAADTEDEFR-RDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPF 198 Query: 182 GRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 G+ A +E WL+ RD +DA+F+ G RI AR + +R + + +H+ PH Sbjct: 199 GKAAADALEQWLEARDRMAKVEDAMFVGVRGGRIDARQI-RRIVDRTAQVAGADHLSPHS 257 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+ ATH+L+ DLR VQE+LGH++L TTQIYTH+ Q L + AHPRA Sbjct: 258 LRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 161/300 (53%), Gaps = 9/300 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-WQQCDVTMVRNFAVR 62 + T +E + RYL +ER S T Y L ++ F E + + M+R++ Sbjct: 1 MDTVLEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAA 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 G ++LA R S++++F W V + + +PA + PKA R LP + D Sbjct: 61 HAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120 Query: 123 LDI-----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L+ DPLAVRDR ++E++Y G+R+SEL GLD+ +D + V+GKG+K+R Sbjct: 121 LEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQR 180 Query: 178 RLPIGRNAVAWIEHWL-DLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P G A A + WL + R + D AL L GKR+ R + + G Sbjct: 181 TVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGA 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+LE DLR VQELLGH++L+TTQ+YTH+ L +V+D AHPRA Sbjct: 241 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 163/290 (56%), Gaps = 9/290 (3%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNFAVRSRRKG 67 +Y +YL +E+ LS T+ Y L+ ++ + + L++ DV + + +F+ G Sbjct: 13 KYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLT---LENINILDVRLENLEDFSAGLHDIG 69 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-DID 126 + S A LS +RSF+ +L+ ++ LKA+P + + +P+ LP+ + V++++ L+ ID Sbjct: 70 IHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSID 129 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + R+RA+LE +Y GLR+SEL L + L E G + V GKGSK+R +PI A+ Sbjct: 130 RSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPRAI 189 Query: 187 AWIEHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 I + R+L + +D +F+S GK IS V E + GL + PH R Sbjct: 190 KEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLKKKISPHTFR 249 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 HSFATH+LE +LR +Q +LGH ++ TT+IYTH+D L S HPR Sbjct: 250 HSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPR 299 >UniRef50_A3M0R9 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M0R9_ACIBT Length = 310 Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 152/264 (57%), Gaps = 13/264 (4%) Query: 47 SWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKA 106 + ++ + + +R F + G+G ++L +SA+R+FF +L + + NPA+ + K+ Sbjct: 42 ALEEIEASDIRTFIAYRAQNGVGVSTLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKS 101 Query: 107 PRHLPKNIDVDDMNRLLD----IDINDPLAV----RDRAMLEVMYGAGLRLSELVGLDIK 158 + LPK +V +N +LD ++ P + RD A++E+ Y GLRL E+ L I+ Sbjct: 102 SKVLPKFHEVTVINEVLDSNKNLEFERPSSTVIFKRDLALIEIAYSCGLRLEEIHSLQIE 161 Query: 159 HLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED-----DALFLSKLGK 213 +++++ +V V GKG+K R +P+G A+ WL LR+ ++D + +F++ G Sbjct: 162 NVEVKRKQVRVTGKGNKTRIIPLGSKAIEAYLEWLPLREEIMNKDTNQKHNYVFVTTTGA 221 Query: 214 RISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQ 273 ++S + KR G +PH LRHSFATH++ +S +R +QE+LGH+NL+TTQ Sbjct: 222 QLSRVQINKRIKNAFKLAGYPIQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQ 281 Query: 274 IYTHLDFQHLASVYDAAHPRAKRG 297 IYT LD + +VY HPRA + Sbjct: 282 IYTDLDHTSMTNVYMDTHPRAVKN 305 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 99/303 (32%), Positives = 174/303 (57%), Gaps = 20/303 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIN-FASENGLQSWQQCDVTMVRNFAVRSRRK 66 ++R++ ++ +ER LS T+ Y L+ +E ++ D+T + + S + Sbjct: 22 IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIK-----DITTISQLDIESYIR 76 Query: 67 -----GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 GLG ++A RL+++ + ++++ +++A+ + V APK +LP + ++++NR Sbjct: 77 TLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNR 136 Query: 122 LLDIDIN----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 +++ N D +++RD A+LE +Y G R+SE VG+ + +DL V + GKGSK+R Sbjct: 137 VIEAAGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQR 196 Query: 178 RLPIGRNAVAWIEHWLDLR----DLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +PIG AV + ++++ L G E +FL+K G +S ++ + + G + Sbjct: 197 LVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAK 256 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L+ +HPH LRHS ATH++ D+R VQELLGHA+++TTQIYTH+ L Y +HP Sbjct: 257 LDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316 Query: 293 RAK 295 RAK Sbjct: 317 RAK 319 >UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM7_9FIRM Length = 304 Score = 169 bits (429), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 92/281 (32%), Positives = 163/281 (58%), Gaps = 4/281 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 +YL Y+S++ S T+ Y+ L F ++ + Q D M+ + VR + Sbjct: 9 QYLIYISIQFPKSEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEY-VRVLARDHA 67 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND 129 AAS+ ++A+R F +L + + + +PA+ + + + LP D++ +++ + Sbjct: 68 AASVNHAITAIRGFHQFLAFRFD-ELDPAEYLEQLQRTQSLPVYCTRDEIEKIMAQFGHS 126 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 P +R A+ E++YG GLR+SE L + +DLE G + + GKG+KER +P+ + + + Sbjct: 127 PKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVPMPKQTIKIV 186 Query: 190 EHWLD-LRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 ++D +R L+ + + LF+++LGK+ + +++ I+ G+ + PHKLRH++A Sbjct: 187 REYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPITPHKLRHTYA 246 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 THMLE DLR VQELLGH++++TTQIYTH+D L + YD Sbjct: 247 THMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYD 287 >UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGY7_KYTSD Length = 336 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 110/333 (33%), Positives = 171/333 (51%), Gaps = 40/333 (12%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L +VE + +L +ER SP T+ Y L A+ G W+Q ++ +R+FA Sbjct: 4 TGLLREVEGFADHLLLERGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAA 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R GL ++LA ++ R+FF W+V+ L +P+ + +P+ + LP + + + Sbjct: 64 RRAAAGLARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQ 123 Query: 122 LLDIDIN---------------------------------DPLAV----RDRAMLEVMYG 144 L++ DP+++ RDRA+LE++Y Sbjct: 124 LVEGGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYA 183 Query: 145 AGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWL--DLRDLFGSE 202 G+R+ ELV LD + L+ V V GKGSKER +P G A+ +E W+ +L G+ Sbjct: 184 TGIRVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGAR 243 Query: 203 D-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQ 261 +ALFL G RI R V++ + + PH LRHS ATHM+++ D+R VQ Sbjct: 244 SGEALFLGVRGGRIDPREVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQ 303 Query: 262 ELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ELLGHA+L+TTQ+YTH+ + L +D +HPRA Sbjct: 304 ELLGHASLATTQVYTHVSVERLREAFDRSHPRA 336 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 155/290 (53%), Gaps = 11/290 (3%) Query: 12 LRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAA 71 R + R LS T Y R L+ + L W DV R+G Sbjct: 27 FRQAMLARGLSTRTRNAYVRDLK-LCETTHSKALTLWSDMDVMQCLTAL---DRQGKTPR 82 Query: 72 SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDP 130 + A LS+LR F+ W+V + NP + + PK R LPK++ +D+ LL D + Sbjct: 83 TQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAPDTSTA 142 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 L +RD+AMLEV+Y GLR+SEL+ L ++ ++L +G + + GKG+K R +P+G A ++ Sbjct: 143 LGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYASDALD 202 Query: 191 HWLD------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 +L + L A+FL+ G ++ +N ++ + G+ + + PH LRH Sbjct: 203 DYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSDLSPHTLRH 262 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +FATH+L DLR VQ LLGH++LSTTQIYTH+ L +++A HPR Sbjct: 263 AFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPRG 312 >UniRef50_Q1GE03 Phage integrase n=13 Tax=Rhodobacterales RepID=Q1GE03_SILST Length = 311 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/262 (38%), Positives = 143/262 (54%), Gaps = 5/262 (1%) Query: 37 INFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKAN 96 ++F + GL + +Q +R + +R G GA SLA +LSA++ F+ WL + + Sbjct: 51 LHFGAPQGLGALRQITTADMRAWMASARSSGTGARSLARKLSAVKKFYGWLAKREGFEPT 110 Query: 97 PAKGVSAPKAPRHLPKNIDVDDMNRLLDI----DINDPLAVRDRAMLEVMYGAGLRLSEL 152 APK + LP+ +D D ++D D ++ RD A++ ++YG GLR+SE Sbjct: 111 AVLSTRAPKFQKKLPRPLDQDAARAMIDTVELQSQKDWVSARDVAVVTLLYGCGLRISEA 170 Query: 153 VGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLG 212 +GL K L + + + GKG KER +P+ A +E +L L LF G Sbjct: 171 LGLLGKDAPLPA-TLRIKGKGGKERVVPVLPAAQQAVERYLALCPHPKEAHLPLFRGVRG 229 Query: 213 KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTT 272 + AR +Q A + GL PH LRHSFATH+LE+ GDLR +QELLGHA+LSTT Sbjct: 230 GALHARMIQGVMAGARRQLGLPATATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTT 289 Query: 273 QIYTHLDFQHLASVYDAAHPRA 294 Q YT +D HL VY AHP+A Sbjct: 290 QAYTAVDTAHLMEVYARAHPKA 311 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 157/282 (55%), Gaps = 3/282 (1%) Query: 12 LRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAA 71 L+ L++ R SP T +Y+ L ++ ++ S Q D + ++ + R G+ Sbjct: 16 LQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHH-TSLMQADGKAILDYLAKLGRDGMKPT 74 Query: 72 SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDP 130 ++ R SAL ++F WL QN + +PA+ + + R LPK + D+ RLL + DP Sbjct: 75 TIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLLAAPETEDP 134 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 + +RDR MLE++Y G+R+SELV L +++++G + V+GKG KER +P G A W++ Sbjct: 135 VGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPFGEEAGQWLQ 194 Query: 191 HWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHM 250 WL LR LF + G ++ +N R + G+ PH LRH+FATH+ Sbjct: 195 QWLLLRPA-KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSPHTLRHAFATHL 253 Query: 251 LESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L DLR VQ LLGHA+++TT+IYTH+ + + + +HP Sbjct: 254 LNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHP 295 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/288 (36%), Positives = 158/288 (54%), Gaps = 7/288 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L YL VE+ + T+ Y R L + F E + DVT F + + +G+ Sbjct: 8 FLNYLLVEKGAAANTVSAYSRDLNRYLLFLGEREPDGIRPSDVT---GFLAKLKGEGIAP 64 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND- 129 S A LSALR +L+ + + NP + APK R LP + ++ LL ++ Sbjct: 65 RSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTG 124 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 +RD+AMLE++Y GLR+SELVGL + ++L +G + +GKG KER +P+G +A Sbjct: 125 AQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESACHAT 184 Query: 190 EHWLD-LRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 +L R E + LFLS+LG +S + + ++ G+ + PH LRHSF Sbjct: 185 GVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISPHTLRHSF 244 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ATH+LE+ DLR VQ +LGHA+LS+TQIYTH+ + + ++ HPR Sbjct: 245 ATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPRG 292 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/302 (35%), Positives = 159/302 (52%), Gaps = 9/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M D +E + YL+++ S T Y L +++ FA E G + ++R++ Sbjct: 1 MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERG-TGLDGLSLPLLRSWL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM- 119 + G+ +LA R SA+++F W V + L A+PA + PK R LP + D Sbjct: 60 SAAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQAL 119 Query: 120 ----NRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 DP+A+RDR ++E++Y G+R+SEL GLDI +D V V+GKG+K Sbjct: 120 GAMAAAKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNK 179 Query: 176 ERRLPIGRNAVAWIEHWL-DLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQG 232 +R +P G A + WL D R + + AL L G+R+ R + + Sbjct: 180 QRSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVS 239 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + PH LRHS ATH+LE DLR VQELLGH++L+TTQ+YTH+ L +V+D AHP Sbjct: 240 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 Query: 293 RA 294 RA Sbjct: 300 RA 301 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 161/305 (52%), Gaps = 27/305 (8%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG--- 67 +L YLSVER SP T+ YQR L+ + + G + Q + F VR+ G Sbjct: 20 FLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGF-VRALGDGFAS 78 Query: 68 ---LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 LG+ S+ L+A RS+ +L L AN A V K PR LP+ + +++M LL Sbjct: 79 FPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALLA 138 Query: 125 I--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV--MGKGSKERRLP 180 D ++RDRA+LE +Y +G R+SE + L + +D E+ V GKG KER Sbjct: 139 AASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISM 198 Query: 181 IGRNAVAWIEHWL-DLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQG---- 232 +G A ++ +L +R G +FL+ GK +S R W I Q Sbjct: 199 LGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMS------RQTAWAIIQAAAKR 252 Query: 233 --LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 ++ VHPH LRH FATH+L+ D+R VQELLGHA+++TT+IYT + Q L VY +A Sbjct: 253 AQIDRPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASA 312 Query: 291 HPRAK 295 HPRA+ Sbjct: 313 HPRAR 317 >UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepID=XERC_CHLT2 Length = 315 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 76 RLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDPLAVR 134 RLSA++SF + V + NPA+ + P+ P+ LP + + + L+ +++ R Sbjct: 91 RLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPELDKVTGFR 150 Query: 135 DRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD 194 DR +LE+ Y +GLR+SE+ L+ +D +S + + GKG KER +P+ + AV W++ +L+ Sbjct: 151 DRCLLELFYSSGLRISEITALNRADIDFQSHLLHIRGKGKKERIVPMTKVAVQWLQDYLN 210 Query: 195 LRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLE 252 D E D A FL++ GKR+S R++ ++F ++ +K GL+ + PH +RH+ ATH LE Sbjct: 211 HPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIRHTIATHWLE 270 Query: 253 SSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 DL+ +Q LLGH +L TT IYTH+ + ++D HP Sbjct: 271 RGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 310 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 6 TDV-ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 TDV + YL Y+ + + T+ +Y L + + ++ + D + V++F R Sbjct: 4 TDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYLR 63 Query: 65 R-----------KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKN 113 + K +AS+ +++L F +L NP + + KA +HLP Sbjct: 64 QDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPVY 123 Query: 114 IDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 ++ D+ RLLD + + D+A++E++YG GLR+SE L ++ + LE G + V+GKG Sbjct: 124 FNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGKG 183 Query: 174 SKERRLPIGRNAVAWIEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +KER +P+ +E++L +R + + +F++ G+ I+ + + + + G Sbjct: 184 NKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLALG 243 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L+ + H RHSFA+H+L+ DLR VQELLGH+++STTQIYTH+ + L SVY + HP Sbjct: 244 LDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHP 303 Query: 293 RAKRGK 298 RAK+ K Sbjct: 304 RAKKHK 309 >UniRef50_A3VV31 Integrase/recombinase XerC, putative n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VV31_9PROT Length = 315 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 156/297 (52%), Gaps = 15/297 (5%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASEN--------GLQSWQQCDVTMVRNFAVR 62 +LR+L + + SP T+ NY++ ++ +FA + + W+ D R F Sbjct: 19 FLRHLETQTRASPYTIRNYRQTIDRFSDFARRHRGGEVDLVDIARWRTADF---RAFLAD 75 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID--VDDMN 120 R +G+ +L L LSAL+ F ++ + + P + PKAPR LP+ I Sbjct: 76 RRAEGIAPPTLRLDLSALKQLFRFIDRRTGSETTPLYALRTPKAPRRLPRPIGQAPALAL 135 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 D RDRA+ ++YGAGLRLSE + LD + L + V+GKG+K R +P Sbjct: 136 AEAAEHTQDWTVHRDRALFALLYGAGLRLSEALALDRRDLPPRGVSLRVLGKGAKMRDVP 195 Query: 181 IGRNAVAWIEHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + I+ +LD RD + G+ ALFL G+R+S Q+ GL++ Sbjct: 196 LLDVVRTRIDTYLDHRDKAIPGNTAPALFLGAKGRRLSPGVAQRALRRERATLGLSDDAT 255 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRH+FATH+L + DLR +Q LLGH++L TTQ YT +D L +V+ AAHPR + Sbjct: 256 PHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAAHPRGR 312 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 100/317 (31%), Positives = 165/317 (52%), Gaps = 30/317 (9%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQ-----QCDVTMVRNFAV 61 +E +L +L R +SP T+ Y+ L +F E GL + + +V VR F Sbjct: 20 LEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMG 79 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 KG+ S+A +L++++SF+ +L+ + ++P V P+ + +P+ + ++ + Sbjct: 80 HLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQ 139 Query: 122 LL-----------------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 L ++ RDRA+LEV+YG GLRLSEL+ L+ +DL Sbjct: 140 LFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVH 199 Query: 165 GEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF-------GSEDDALFLSKLGKRISA 217 G + V GKG K+R +P+G AV + + ++R F E +F++ G+++ Sbjct: 200 GFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLYP 259 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 VQ+ + + +PH LRHSFATHML DL+ V E+LGH++L+TT++YTH Sbjct: 260 MLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTH 319 Query: 278 LDFQHLASVYDAAHPRA 294 + F L +YD AHP A Sbjct: 320 VTFSRLKEIYDKAHPGA 336 >UniRef50_A6GU46 Tyrosine recombinase XerC n=1 Tax=Limnobacter sp. MED105 RepID=A6GU46_9BURK Length = 298 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 165/294 (56%), Gaps = 15/294 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++RYL +L +ER+ S ++ QR L I Q T +++ + G Sbjct: 14 IQRYLDFLRLERRYSDHSVKAAQRDLSLIDTPPG--------QVTTTALKSILAQRHAAG 65 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 ASLA S+ R FF +L++ ++ +P G+ PK R LPK + VD + LL + Sbjct: 66 AAPASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRSLPKAVGVDPLAALLAKPL 125 Query: 128 NDPLA-VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + ++E++Y GLR+SE + L + L+ S E+ V+GKG+K R +P+ Sbjct: 126 PQEFRFAQAHVLIELLYCTGLRISEALTLQAEALN-GSTELRVVGKGNKARIVPVVDALQ 184 Query: 187 AWIEHWLDLRD-----LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + +++ R L + +LF+S G ++AR Q+ A+ K GL H+HPH Sbjct: 185 ARLREFVEPRQIHLLKLGKGQGASLFVSAKGLALTARQAQRDIADHAAKCGLGQHLHPHM 244 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 LRHSF +H+L+ + +LR VQELLGHA++++TQ+YT LDF HL+SVYD A PRAK Sbjct: 245 LRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTALDFDHLSSVYDNAFPRAK 298 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/295 (35%), Positives = 161/295 (54%), Gaps = 8/295 (2%) Query: 11 YLRYLSVERQLSPITLLNYQR---QLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ YL +ER LS TL Y+ Q A ++ A ++ L+ V A + Sbjct: 22 FIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGDLAAFVGALAAGGDGRA 81 Query: 68 LGAASLALR-LSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 AA+ R ++ LRSF+ L + L +P + P + LPK + D++ LL Sbjct: 82 PAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEVQHLLSQP 141 Query: 127 I-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 P A+RDRA+LE+MY GLR SE V + + LD++ G + GKG+KER +PIG A Sbjct: 142 RGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGNKERLVPIGSKA 201 Query: 186 VAWIEHWLDL--RDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + + H+L + G E+ +F+++ G ++ + + K GL + + PH L Sbjct: 202 LDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTAGLGDKMSPHTL 261 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RH+FATH+L DLR +QE+LGHA+++TTQIYTHL + L VY AHPRA+ G Sbjct: 262 RHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRAQLG 316 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 162/296 (54%), Gaps = 14/296 (4%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF-AVRSR 64 T +E + L +E LS TL Y+R L + + S D M+ + A RS Sbjct: 51 TSIELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSD 110 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 K A S RLS R ++ W + ++ +P + + K P P + + LL Sbjct: 111 GK---ATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLA 167 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 ++ L +RDR MLE+MY +GLR+SELV L + L G V VMGKGSKER +P G Sbjct: 168 APEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGE 227 Query: 184 NAVAWIEHWL-DLRD-LFGSE-DDALFLSKLGKRISAR---NVQKRFAEWGIKQGLNNHV 237 A WIE +L + R L G+ DALF++ G+ ++ + N+ KR A ++ + H+ Sbjct: 228 VAHGWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHA---MRAEIRAHL 284 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRH+FATH+L DLR VQ LLGH+++STTQIYTH+ + L +++ A HPR Sbjct: 285 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPR 340 >UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHC9_ACHLI Length = 306 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 9/295 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS--WQQCDVTMVRNFAVRSRR 65 + Y YL +E+ S T ++Y ++ +F + GL + RN+ Sbjct: 4 ISDYKDYLIIEKNFSEHTAISYINDVKGFEDFLIKEGLAKDLLGARRPRLARNYISYLDN 63 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 + ++A +LS+L++F+++L+ + ++ N + APK + LP ID + +N L D Sbjct: 64 QDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYLFDS 123 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ID + PL R+ +L+++Y G+R SEL+ L+IK + L SG++ + GKG K+R + + Sbjct: 124 IDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRYIILHEK 183 Query: 185 AVAWIEHWLDLR--DLFGSEDDA----LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + I H+L L DD LF++ G ++ R ++ + G +H Sbjct: 184 LIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSGETYAIH 243 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRH+FAT ML DLR VQELLGH +L +TQIYTH+ + L Y HPR Sbjct: 244 PHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPR 298 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 162/300 (54%), Gaps = 8/300 (2%) Query: 1 MTDLHTDV-ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQ-QCDVTMVRN 58 MT H ++ + + YLSVE+ LS ++ +Y L NF + + + Q D M Sbjct: 1 MTSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIM--R 58 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 F + + + + ++A + A+R F+ +L + +L NP + + P+ R +P + D+ Sbjct: 59 FLNEEKDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDE 118 Query: 119 MNRLL-DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 + L I ++ +RD+ + E++Y +GLR+SE L + +DLE + V GKG ++R Sbjct: 119 IEELFASIKEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQR 178 Query: 178 RLPIGRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P G ++ + +L F + LF+SK G I+ ++V + + + + Sbjct: 179 LVPFGEKSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIL 238 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHSFATH+LE+ DL+ VQELLGH +++TTQIYTH+ + L V+ HPR Sbjct: 239 KKVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPRG 298 >UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ50_9FIRM Length = 297 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/288 (31%), Positives = 171/288 (59%), Gaps = 9/288 (3%) Query: 14 YLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASL 73 +L + + SP T+ +Y+ L+ + + E + Q+ + +V++F S++ + +++ Sbjct: 13 HLEINQGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQDFL--SQQSTIKSSNS 70 Query: 74 ALRL-SALRSFF-DWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDP 130 + + +++R+F D S E NP + K +LP + V+++ +LL+ +DP Sbjct: 71 VVHMATSIRNFHEDIEFSTGE--ENPVSLIQVRKNETYLPSFLSVEEVKQLLNSFTRDDP 128 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 +R +LE++Y GLR+SEL L + + LE+G + ++GKG+KER +PI V ++ Sbjct: 129 KQELNRTILELIYACGLRISELCSLTVAQVQLETGILRILGKGNKERIVPIPNQVVKDLD 188 Query: 191 HWLDL-RDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFAT 248 ++L+L R ++ + + F++ LG RI+AR++Q + ++ G + PH LRH++AT Sbjct: 189 YYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYAT 248 Query: 249 HMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 H+L++ DLR +QELLGH+N+ TT+IYTH+ + L Y HP +K+ Sbjct: 249 HLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHPLSKK 296 >UniRef50_Q8XTL6 Tyrosine recombinase xerC 2 n=1 Tax=Ralstonia solanacearum RepID=XERC2_RALSO Length = 347 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 137/221 (61%), Gaps = 5/221 (2%) Query: 77 LSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNI-DVDDMNRLL-DIDINDPLAVR 134 L+ L+++F WL +N + NPA + PK P+HLP+ I V ++ +L + D P +R Sbjct: 97 LAPLKTWFKWLARENHILYNPASELDLPKLPKHLPRAILSVQEVEAILAEADPATPYGLR 156 Query: 135 DRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM-GKGSKERRLPIGRNAVAWIEHWL 193 DRAMLE++Y G+R E+ GL + +D +V GKG+K+R +P+G A+AW++ +L Sbjct: 157 DRAMLELLYSTGIRRMEVAGLALYDVDATRRLAFVRDGKGAKDRVVPVGVRALAWLDRYL 216 Query: 194 -DLR-DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHML 251 + R L +E +ALF++ G+ +S V R + G+ H LRH+ ATHML Sbjct: 217 LEARPQLIVAEREALFVTDYGEPVSPEYVASRVKRYMEFAGIQKPGATHLLRHAMATHML 276 Query: 252 ESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 E+ D+R +Q LLGHA L+TT+IYTH+ +HL +++DA HP Sbjct: 277 EAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHP 317 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 155/296 (52%), Gaps = 9/296 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-WQQCDVTMVRNFAVRSRRK 66 ++ + +YL++ER S T Y L ++ F +E + + ++R + Sbjct: 5 LDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQAAA 64 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 G +LA R SA+++F W V + + ++PA + PKA R LP + D LD Sbjct: 65 GTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAA 124 Query: 126 ----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 DPLA+RDR ++E++Y G+R+SEL GLDI +D + V+GKG K+R +P Sbjct: 125 NSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPF 184 Query: 182 GRNAVAWIEHWLDL-RDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A + WL R + + AL L G+R+ R + E + Sbjct: 185 GEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIG 244 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHS ATH+LE DLR VQELLGH+ L+TTQ+YTH+ L +V+D AHPRA Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 169/292 (57%), Gaps = 5/292 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +++ +L ++ E+ LS T+ Y R ++ N+A + ++ +Q + + F + Sbjct: 15 EIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEPEHLIAFLGSLKSA 74 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-I 125 ++++ L +L+ FF +L + ++ NP+ + +PK + LP +D+++++ L++ Sbjct: 75 DYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQP 134 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D VRDRA+ E++YG+GLR+SE+ L I +D + V GKGSKER +PIG A Sbjct: 135 DNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSID--DQYIRVYGKGSKERIVPIGSQA 192 Query: 186 VAWIEHWLDL-RDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + ++ +L L R + SE + +LF++ GK + ++ + E+ + G+ + PH LR Sbjct: 193 LMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAGITKTISPHTLR 252 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 HSFATH+L + DLR +Q+LLGHAN+S+T YT + HL + HP+ K Sbjct: 253 HSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPKWK 304 >UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB85_BRAFD Length = 332 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 160/314 (50%), Gaps = 33/314 (10%) Query: 14 YLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASL 73 +L +ER S T+ Y+R+ ++ + + DVT +R++ G A++L Sbjct: 19 HLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSARAETGASASTL 78 Query: 74 ALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDIN---- 128 A +++R+F WL S + + + AP+ RHLP + D LLD +D + Sbjct: 79 ARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLDGLDGSARDD 138 Query: 129 ----------------DP----LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVW 168 DP + +RD A+LE++Y +GLR+SELV LD +D + G V Sbjct: 139 SAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSRIDRQHGTVR 198 Query: 169 VMGKGSKERRLPIGRNAVAWIEHW--------LDLRDLFGSEDDALFLSKLGKRISARNV 220 V GKG +ER +P+G A+ ++ W L DALFL G R+ R V Sbjct: 199 VRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGVRGGRLGDRAV 258 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 + + G++ HV PH LRHS ATH++E DLR VQ+ LGH++L+TTQIYTH+ Sbjct: 259 RTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQIYTHVSA 318 Query: 281 QHLASVYDAAHPRA 294 + L D AHPRA Sbjct: 319 ERLRRTVDQAHPRA 332 >UniRef50_C9RKS4 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKS4_FIBSS Length = 298 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 11/295 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDV-TMVRNFAVRSRR 65 ++ +L YL +R+ S T++ Y++ LE + +EN L+++ + +V V + ++ + Sbjct: 7 IQNFLIYLQTQRRYSERTVITYRKSLEKYLATINENAPLEAFSEMNVKAFVWDLKIKQK- 65 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM--NRLL 123 L S+ L+AL+SF +LV L+ NPA+ V PK P+ L + D+ + Sbjct: 66 --LAPTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKDLAEEKFP 123 Query: 124 DIDINDPLA-VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++ N L VR R +LE++YG+GLR+SE L L ++ V V+GKG+KER +PI Sbjct: 124 ELPENPTLPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKERIVPIT 183 Query: 183 RNAVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 ++W+E + + G + +FLS+ GK R ++ G P Sbjct: 184 DTLISWLEKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIGWEGKASP 243 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE+ ++ V+E+LGH+N+STTQIYTH++ + L + HPRA Sbjct: 244 HVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQAFKKTHPRA 298 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 157/305 (51%), Gaps = 20/305 (6%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAII-----NFASENGLQSWQQCDVTMVRNFAVRSRR 65 + +YL E+ S T Y + I + A E +W+Q D + + + Sbjct: 13 FFKYLKTEKNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQE 72 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 + +L + S+LRS +++ + NP + + A K + LP + +D++ LL Sbjct: 73 SKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSS 132 Query: 126 DI----------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 ND +A RD A+LE++Y GLR+ E + ++ ++LE + + GKG K Sbjct: 133 PAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKK 192 Query: 176 ERRLPIGRNAVAWIEHWLDLRDL----FGSEDDALFLS-KLGKRISARNVQKRFAEWGIK 230 +R +G A +E + R + S +D +F++ K KR+SAR++Q+ + Sbjct: 193 QRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQS 252 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 L + PHKLRHSFATH+L++ DLR VQELLGH NLSTTQIYTH+ L YD A Sbjct: 253 CQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQA 312 Query: 291 HPRAK 295 HP A+ Sbjct: 313 HPHAQ 317 >UniRef50_A1B4Z4 Phage integrase family protein n=21 Tax=Alphaproteobacteria RepID=A1B4Z4_PARDP Length = 312 Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 158/303 (52%), Gaps = 22/303 (7%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINF--------ASENGLQSWQQCDVTMVRN 58 ++ER+L R S T+ YQ L A + F A L Q D+ R Sbjct: 17 NLERWLASERAARDRSDHTIRAYQADLLAFLTFLGSYHGTPALPATLAGLTQTDM---RA 73 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 FA R +GL A SLA RLSA RSF W+ ++ A+ A PK R LP+ + + Sbjct: 74 FAAAERGRGLSARSLARRLSATRSFIRWMSDRHGFDASRALASRGPKYTRSLPRPLAPEQ 133 Query: 119 MNRLLDIDIND-P---LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 +L+I + P +A RD A+L +++G GLR+SE +GL+ L + + GKG Sbjct: 134 AQDVLEITGSTHPEAWIATRDAAVLTLLWGCGLRISEALGLNGADWPLREA-LTIRGKGG 192 Query: 175 KERR---LPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 +ER+ LPI R A+A +L L LF G R+S + + Sbjct: 193 RERQVPVLPIAREAIA---DYLRLCPYPLQAKAPLFRGARGGRLSPTLISGAMRQARQVL 249 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 GL PH LRHSFATH+L + GDLR +QELLGHA+LSTTQ+YT +D HL +VY AAH Sbjct: 250 GLPPTATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAVYRAAH 309 Query: 292 PRA 294 PRA Sbjct: 310 PRA 312 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 155/299 (51%), Gaps = 16/299 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR-- 65 + + +YL+VERQ S T+ Y ++A F ++ G + D+ +V F V Sbjct: 4 ISLFKQYLTVERQYSEKTVTAYLEDIDAFQKFLTDTG----DKTDLLLVDRFDVNVYMSY 59 Query: 66 ---KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + L S++ ++SALRSF+ +LV + + NP + V K LP +MN L Sbjct: 60 LFDRHLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNML 119 Query: 123 LDIDINDPLA--VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + A +R+ A+LEV+YG G+R+SE L +D + V+GKG+KER +P Sbjct: 120 FEAVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVP 179 Query: 181 IGRNAVAWIEH-----WLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 GR A +++ W + + +F++ K I+ ++ + LN Sbjct: 180 FGRYAKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNG 239 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH LRHSFAT +L + DLR VQELLGH++LSTTQIYTH+ + L Y PR+ Sbjct: 240 KIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRS 298 >UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes RepID=A1ZPB9_9SPHI Length = 299 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 165/293 (56%), Gaps = 6/293 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW-QQCDVTMVRNFAVRSRRK 66 ++ + YL +ER LS +L Y ++ ++ GL + ++ F + Sbjct: 7 IKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLAKL 66 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-I 125 G+ A+S A LS +++F+ +L+ + ++ +P+ V P+ R +P + + ++ LL I Sbjct: 67 GIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVI 126 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D++ P R+RAM+EV+Y +GLR++EL+ L I +L L+ G + ++GK +KER +PIGR A Sbjct: 127 DLSTPEGARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGREA 186 Query: 186 ----VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 +++IE+ + + +D +FL++ G +IS V E + + ++ PH Sbjct: 187 ARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNISPHT 246 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH++ +++ VQE+LGH N++TT+IY LD L HPR+ Sbjct: 247 FRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPRS 299 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/273 (31%), Positives = 165/273 (60%), Gaps = 5/273 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +VE+++ YL +++S T+L+Y+R L ++ ++ G+ + T + ++ + R+ Sbjct: 4 EVEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLERE 63 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 G AA+++ L+++++FF + ++ +K NPA+ + APK + P + V+++ RLL+ Sbjct: 64 GKAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQP 123 Query: 127 IN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 P +RD+AMLE++Y G+R+SEL+ L++ H+++ G + G +ER +P GR A Sbjct: 124 GGRTPKEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSG-RERTIPFGRVA 182 Query: 186 VAWIEHWL-DLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 ++ +L + R E D LF++ G ++S + K +G K G+ + PH L Sbjct: 183 KKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITPHTL 242 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIY 275 RHSFA H++ S D++ VQ++LGH++++TTQ+Y Sbjct: 243 RHSFAAHLISSGADMKAVQQILGHSDMATTQMY 275 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 158/302 (52%), Gaps = 17/302 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + YL R LS T Y+ LE + G + + + +R + +S ++ Sbjct: 7 IDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQSSKRH 66 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 +S+A + A+R FF W + ANPA + PK P LP + +L+D +D Sbjct: 67 -ARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVD 125 Query: 127 INDP-----------LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 P + +R+ AMLEV+Y G+R++ELVGLD+ + ++ + V GKG+K Sbjct: 126 EQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNK 185 Query: 176 ERRLPIGRNAVAWIEHWLD---LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +R +P G A I WL+ R + DALFL G RI R V++ E + G Sbjct: 186 QRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAG 245 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + + + PH LRHS ATH+L+ DLR VQELLGH++L TTQ YTH+ + L + Y A P Sbjct: 246 VPD-ISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 304 Query: 293 RA 294 RA Sbjct: 305 RA 306 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 118/327 (36%), Positives = 172/327 (52%), Gaps = 42/327 (12%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR-----R 65 YL +L VER ++ T+L+Y+R L + F + G V +F V R R Sbjct: 27 YLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVADVTAADVSDFLVCLRTGADGR 86 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 L A+S A + A R + +L+++ +A+P++ V P R LPK + V+ + RLLD Sbjct: 87 PPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRLPKALPVEAIGRLLDA 146 Query: 126 ----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE--------------- 166 D + P +RDRA+LE++Y G R+SE+VGLD+ +DL G Sbjct: 147 AGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDDIDLGPGRLAGRSSTDPTDPTDP 206 Query: 167 ---------VWVMGKGSKERRLPIGRNAVAWIEHWL--------DLRDLFGSEDDALFLS 209 V + GKG+KER +P+G A+ +E +L G ALFL+ Sbjct: 207 QVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVLAAAGRGAGPARGALFLN 266 Query: 210 KLGKRISARNVQKRFAEWGIKQGLN-NHVHPHKLRHSFATHMLESSGDLRGVQELLGHAN 268 G R+S ++ + A+ + GL + V PH LRHSFATH+LE D+R VQELLGHA+ Sbjct: 267 IRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRSVQELLGHAS 326 Query: 269 LSTTQIYTHLDFQHLASVYDAAHPRAK 295 ++TTQIYT + L VY AHPRA+ Sbjct: 327 VTTTQIYTLVTVDALREVYVTAHPRAR 353 >UniRef50_C6X054 Integrase, site-specific recombinase n=2 Tax=Flavobacteriaceae RepID=C6X054_FLAB3 Length = 296 Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 8/292 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQSWQQCDVTMVRNFAVRSRRK 66 V+R+L Y++VE++ SP TL +Y+R LE F ++ + D ++RNF K Sbjct: 2 VDRFLEYIAVEKRYSPHTLTSYRRDLEDFSVFLLRTEAHHNYVEVDKKIIRNFMAALGEK 61 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPK--APRHLPKNIDVDDMNRLLD 124 + S+ +LS LRSF+ +L+ E+K +P + K A + +P D+MN L Sbjct: 62 AIAKRSINRKLSTLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVP--FSPDEMNDLQK 119 Query: 125 IDINDPLAVR--DRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + PL ++E +Y G+R +EL GL + H+DL E+ + GKG+K+R +P+ Sbjct: 120 EEFQ-PLKTNFLKELIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGKGNKQRIVPVS 178 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + A +E +L+ R F+S GK+++ + V + PH L Sbjct: 179 DDLCAQLEQYLEFRKPLKEYQMYFFVSAKGKKLNDKFVYSAVNTYLSLVTSKKKKSPHIL 238 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE ++ V+ L+GH +L++TQ+YT + + L V++ AHPRA Sbjct: 239 RHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNIEQLKKVFNNAHPRA 290 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 19/298 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVR--NFAVRSRR 65 + +L YL E L+ T+ Y R ++ + + + + D+T+ +F Sbjct: 36 CDEFLVYLKRECHLADNTVAAYGRDMKRFVTW-----MDGRRPADLTITELSDFVASLHG 90 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 +GL AS++ + A+R+FF +L + NPA+ ++ KA + +P + +++ L Sbjct: 91 EGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSA 150 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 + +D RDRA+LEV+Y G R SE+ L ++ L L+ + GKG K+R +PIG Sbjct: 151 VKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGR 210 Query: 185 AVAWIEHWLD-----LRDLFGSEDDALFLSKLGK---RISARNVQKRFAEWGIKQGLNNH 236 A+ I+ +L+ L D + D LFLS+ GK RI + KR+A+ + G+++ Sbjct: 211 AIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAK---RAGISDE 267 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATH+L DLR VQE+LGHA++ TTQIYTH++ L V+ HPRA Sbjct: 268 ISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 160/296 (54%), Gaps = 5/296 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D +E +L YL E ++ T+ Y+ + +++ + D+ + + Sbjct: 20 DPGVHLEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQH 79 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R+ L A +++ L L+ FF +LV + L + A +++PK ++LPK + + +N+L Sbjct: 80 LNRRKLAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQL 139 Query: 123 LDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L D +RDRA+L +MY G R++E+V L + + L G +GKG+KER + + Sbjct: 140 LAAPCRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSL 199 Query: 182 GRNAVAWIEHWL----DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 AVA +E +L + + + ALFL++ GK++S V + + G + V Sbjct: 200 NPVAVAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEV 259 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRHSFATHM+ ++R +QELLGHAN+ TTQIYTH+D L +V+ HPR Sbjct: 260 SPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPR 315 >UniRef50_B0MSP3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSP3_9BACT Length = 309 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 159/301 (52%), Gaps = 12/301 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF--ASENGLQSWQQCDVTMVRNFAV-RSR 64 ++ +L+YL+ R+ SP+T+ NY+R + + + E ++ V VR + V R+ Sbjct: 2 LQEFLQYLATVRRFSPLTVQNYRRDVTNFLEWLDVPEADFDP-RRITVEDVREWIVHRTE 60 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 K LGAAS+ LS+LRSFF +L + + A K R +P + M +LD Sbjct: 61 TKHLGAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRMEGILD 120 Query: 125 -----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + VR+ ++ + Y GLRL+ELVG+D + + V GKG KER + Sbjct: 121 ELDRESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKGDKERIV 180 Query: 180 PIGRNAVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 PI I H+LD D G S++ ALFL++ GKRIS V + + G+ Sbjct: 181 PILPPVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQGGVQGK 240 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRH+FAT +L + D+R +QELLGHA+L TQ+YTH L +Y AHPR K Sbjct: 241 KSPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTHNSIAKLQKIYSKAHPREKN 300 Query: 297 G 297 G Sbjct: 301 G 301 >UniRef50_B3DX82 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DX82_METI4 Length = 280 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 150/287 (52%), Gaps = 29/287 (10%) Query: 28 NYQRQLEAIINFASENGLQSWQQCD---VTMVRNF-AVRSRRKGLGAASLALRLSALRSF 83 NY + L+ +F WQQC + R++ +R L +S+ +R +ALRSF Sbjct: 3 NYVQPLKEFFSFVK------WQQCKEPKIEECRDYLYFLCKRPDLKPSSIRVRFAALRSF 56 Query: 84 FDWLVSQNEL-KANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID---------------I 127 F++ + ++ K +P V PK R+LP+ + ++ + LL+ Sbjct: 57 FNFFYREKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKKSRW 116 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 N+ RD+A LE +YGAGLR+ EL L K+ + V GK KER +G A A Sbjct: 117 NEWQWKRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGKRKKERYCILGEVATA 176 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + +L+ E + LF+S GK ++ R Q E+ GL+ + PHKLRH+FA Sbjct: 177 SLCSYLESCPF---ESEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKLRHTFA 233 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 TH+LE DLR +QELLGHA+LSTTQIYT + +HL Y HPRA Sbjct: 234 THLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEHLKESYFRTHPRA 280 >UniRef50_C5BWU3 Integrase family protein n=11 Tax=Actinomycetales RepID=C5BWU3_BEUC1 Length = 380 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 111/307 (36%), Positives = 158/307 (51%), Gaps = 21/307 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----WQQCDVTMVRNFAVRS 63 VERY +L +R LS T+ Y + ++ G + + D+ +R + R Sbjct: 75 VERYALHLEAQRGLSAHTVRAYTSDVADLLAELPPTGDEPNGADLTRLDLVALRRWLARQ 134 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R GL ++LA R ++ R+F W L + + +P+A +P + D +L Sbjct: 135 ARAGLARSTLARRSASARTFTAWAHRAGLLAEDVGARLRSPRADVVVPVVLTEADAATVL 194 Query: 124 D--------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV 169 D LA+RD AMLE++YGA LR+SEL GLD +DL V V Sbjct: 195 DGVRADDGGVGADDDEGERSALALRDSAMLELLYGAALRVSELAGLDTGDVDLRERLVRV 254 Query: 170 MGKGSKERRLPIGRNAVAWIEHWLDLR-DLFGSEDD-ALFLSKLGKRISARNVQKRFAEW 227 +GKG+KER +P G A IE W+ +R +L G ALFL G RI R V+ Sbjct: 255 LGKGAKERVVPFGLPAARAIEAWISVRPELAGPRSGRALFLGARGGRIDPRVVRDVVHRA 314 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 + G+ + + PH LRHS ATH+L DLR VQE+LGHA+L+TTQ YTH+ + L + + Sbjct: 315 TARAGVRD-LAPHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPERLRAAF 373 Query: 288 DAAHPRA 294 AHPRA Sbjct: 374 RQAHPRA 380 >UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698363 Length = 227 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 10/212 (4%) Query: 79 ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRA 137 +R F+ +L+ + + +P K + PK LP+ I +M L+D +D +P +R+ A Sbjct: 9 TIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGLRNAA 68 Query: 138 MLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWL---- 193 MLE +YGAGLR+SELV + +++++LE+ + + GKGSKER +PIG A+ + +W+ Sbjct: 69 MLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEKVRNWIMHGR 128 Query: 194 --DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHML 251 L+++ LF+++ GK ++ + K ++ G++ + PH RHSFATH+L Sbjct: 129 PIILKNI---PSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPHTFRHSFATHLL 185 Query: 252 ESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 283 E DLR VQ +LGH+++STTQIYTH+ +L Sbjct: 186 EGGADLRSVQTMLGHSDISTTQIYTHVSRDYL 217 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 168/307 (54%), Gaps = 25/307 (8%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNFAVRSRR 65 + ++L L ER LS ++L+Y+R L N+ ++ Q + ++T +RN+ Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAK---QKLSELNITTDNIRNWVEYLAE 60 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 L A S+ ++S ++S++++L+S+N NP + PK LP+ + +DD+ LL+ Sbjct: 61 NSLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEY 120 Query: 126 DIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVW--------VMGKGSK 175 D P R AM+ ++Y +GLR+SELV L + D+ S +V V+GKG+K Sbjct: 121 CSQDISPEGARLNAMIHLLYASGLRVSELVSLKLS--DILSNKVSREVKKIFSVLGKGNK 178 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSED---DALFL---SKLGKRISARNVQKRFAEWGI 229 ER + I A+ + +L +RD F ++ + ++L S ++ +N + Sbjct: 179 ERIIVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAAL 238 Query: 230 KQGLN-NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 GLN H+ PH LRHSFA+H+LE DLR +QELLGHA++STTQIYTHL HL Sbjct: 239 YAGLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKAL- 297 Query: 289 AAHPRAK 295 HP +K Sbjct: 298 LHHPLSK 304 >UniRef50_B6IPE2 Tyrosine recombinase xerC n=11 Tax=Alphaproteobacteria RepID=XERC_RHOCS Length = 341 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-----GLQSWQQCDVTMVR 57 D +ER+ R+L ER S TL +Y+ L + F +E+ GL D+ R Sbjct: 15 DAAEALERWGRWLEHERGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFR 74 Query: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGV-SAPKAPRHLPKNIDV 116 + G GAA+ + +S +RSFF W ++ L NPA + +APKA R LP+ + Sbjct: 75 AWLAARAADGAGAATRSRGVSGVRSFFRW-ADRSGLLHNPAIALLTAPKAQRPLPRPLAA 133 Query: 117 DDMNRLLDIDINDP----LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGK 172 DD LL+ P + +RDRA+ ++YG GLR+SE +GL+ L + V V+GK Sbjct: 134 DDAALLLEEAAAVPEAPWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGK 193 Query: 173 GSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 G K+R +P+ + +L G LF+ G R+S +++ G Sbjct: 194 GGKQRDVPVLPAVREAVAAYLAAVPWGGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLG 253 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L + PH LRHSFATH+L DLR +Q+LLGHA+LSTTQ YT +D +HL SVY+ AHP Sbjct: 254 LPDSTTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEHLLSVYETAHP 313 Query: 293 RAKR 296 RA+R Sbjct: 314 RARR 317 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 160/285 (56%), Gaps = 4/285 (1%) Query: 14 YLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASL 73 YLS+ER LS T+ Y L + + + + + + N+ + + L +++ Sbjct: 8 YLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRELNDSTI 67 Query: 74 ALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DINDPLA 132 + RL L+ FF +L + + + + + + + R LP + + ++ RLL I D PL Sbjct: 68 SRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYDEAIPLQ 127 Query: 133 VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHW 192 R++ ++E++Y GLR+SEL GL + ESG + V GKGSKER +P G + + Sbjct: 128 FRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVASMSRQY 187 Query: 193 L-DLRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATH 249 + ++R +++ L +S G+ ++ V + E IK +N ++HPH LRHSFA+H Sbjct: 188 IKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLRHSFASH 247 Query: 250 MLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +L ++ DLR +QELLGHA+++TT+IYTH++ L +++ PRA Sbjct: 248 LLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 163/296 (55%), Gaps = 11/296 (3%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTM--VRNFAVRSR 64 D E +L+Y ER S TL Y R + + ++A E L +++ ++ + + Sbjct: 10 DFESFLKY---ERNFSDNTLDAYLRDIRKLSDYA-EFHLDGTGPLEISYENIQEYLFQLS 65 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 ++ S A +S++++FF +L + NP + +PK +LP + +D+ R++ Sbjct: 66 KQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIK 125 Query: 125 -IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 I+I+ L R++ M+EV+YG GLR+SEL+ L I +++ + + V GKG K R +P+ Sbjct: 126 AINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLAT 185 Query: 184 NAVAWIEHWL-DLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 I+ ++ ++R + +D LFL+ G +S V E K G+N + P Sbjct: 186 YTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGINKKISP 245 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H RHSFATH+L++ DLR +QE+LGH++++TT+IYTHL + L V HPR K Sbjct: 246 HTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPRNK 301 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 163/291 (56%), Gaps = 8/291 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D+E + YL+ E+ L+ TL Y+R L + F + + +W Q + + ++ +++ Sbjct: 4 DLEDFFIYLASEKGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQ 63 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 +AS+ L A++ F +L + + N + PK + +P + +++++R+L I Sbjct: 64 HYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIP 123 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 +I RD+A+LE +Y GLR+SEL L I D++ V V+GKG KER +PIG+ A Sbjct: 124 NIQTWRGARDKAILETLYACGLRVSELCQLKI--YDVDDTFVRVLGKGGKERIVPIGQQA 181 Query: 186 VAWIEHWLDLRDLFGSED---DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 +A I+ +L R+ G E+ + LF++K K ++ V K + + + + PH Sbjct: 182 IAAIDGYLSFRE--GGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHTF 239 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 RH+FATH+L+ DLR +Q++LGHA++++T YTH+ L + A HPR Sbjct: 240 RHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S5H6_PROA2 Length = 335 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 164/313 (52%), Gaps = 29/313 (9%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCD-----VTMVRNFAVRSR 64 +L Y+++ER S T Y+ + F ++ L D V VR F Sbjct: 23 FLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMGELL 82 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 KGL S+A +L+A++SF+++L+ +K + V P+ + +P + + +L D Sbjct: 83 EKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEKLFD 142 Query: 125 IDINDPLA----------------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVW 168 ++ P RDRA+LEV+YG GLR+SE++GL ++++L+ + Sbjct: 143 ELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDSLLR 202 Query: 169 VMGKGSKERRLPIGRNAVAWIEHWLDLRDLF-------GSEDDALFLSKLGKRISARNVQ 221 V GKG K+R +P+G A + ++ ++R F + +F++K G+RI VQ Sbjct: 203 VSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPVLVQ 262 Query: 222 KRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 281 + ++ + +PH LRHSFATHML S DL+ V E+LGH NL+TT+IYTH+ F Sbjct: 263 RVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHVTFG 322 Query: 282 HLASVYDAAHPRA 294 + VY AHP+A Sbjct: 323 RIKEVYLKAHPKA 335 >UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria RepID=XERD_NEIMA Length = 291 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 163/290 (56%), Gaps = 9/290 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++R L L ++R+L+ TL Y+R LE I S++G + + V ++ Sbjct: 6 IDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQR- 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 +S A LSA + + W+ + NP + + PK +++P I ++RLL D Sbjct: 65 ---SSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPD 121 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + P +RD+A+LE+MY GLR+SE VGL+ ++DL+ G + +GKG K+R +P+G+ + Sbjct: 122 TDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESA 181 Query: 187 AWI-EHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 W+ ++ + R L G DALF+S+ IS + E+ + G+ H+ PH LR Sbjct: 182 YWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG-HISPHSLR 240 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H+FATH+++ DLR VQ++LGHA+L+TTQIYTH+ L V H R Sbjct: 241 HAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 165/290 (56%), Gaps = 5/290 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E+Y + ++ LS T+ Y+R ++ F E G + ++ DV + ++ ++ G Sbjct: 5 IEQYFAEIR-KKNLSLNTIDAYRRDIKKFHEFLDEKG-EKLREVDVITIMSYVQYLQKNG 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-DID 126 +S+ + ++R+FF +L + + NP PK R+ P + ++++ +LL D Sbjct: 63 RANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPD 122 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 N +RD+AMLE+MY G++++EL+ L I ++L+ + G +KER +P+G AV Sbjct: 123 GNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAV 182 Query: 187 AWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 +E +L +R ++ D LF + G +++ + K ++ + G+ ++ + LRHS Sbjct: 183 KCLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRHS 242 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ-HLASVYDAAHPRA 294 FA H+L++ D++ +QELLGH++++TTQIY+ + + +A VY HPRA Sbjct: 243 FAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales RepID=XERC_CHLFF Length = 312 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/303 (30%), Positives = 163/303 (53%), Gaps = 21/303 (6%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENG---------LQSWQQCDVTM------ 55 +L YL + SP TL NY L + F ++G L S ++ + + Sbjct: 8 FLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLFT 67 Query: 56 ---VRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 VR + + ++ ++ RLSA++SF + + L +P + + P+ P+ LP Sbjct: 68 KDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELPS 127 Query: 113 NIDVDDMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 I + + L+ D++ +RDR +LE+ Y +GLR+SE+V L+ +D S + + G Sbjct: 128 PITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIRG 187 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGI 229 KG KER +PI A W++ +L+ + G D A+FL+ G R++ R++ ++F ++ Sbjct: 188 KGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKYLR 247 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 GL+ ++ PH +RH+ ATH LE+ DL+ +Q LLGH++L TT IYTH+ + ++ Sbjct: 248 LSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNE 307 Query: 290 AHP 292 +HP Sbjct: 308 SHP 310 >UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=Thermoanaerobacteraceae RepID=XERDL_THETN Length = 290 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 88/288 (30%), Positives = 168/288 (58%), Gaps = 4/288 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V +L +L ++LS TL +Y R +E + + +E+G+ T+V N+ +++G Sbjct: 6 VGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIV-NYLYFLKQQG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 A+++ LS++++F+ +L ++ +++ +P+ G++APK + P + V+ ++ LL D Sbjct: 65 KSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFDF 124 Query: 128 -NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 D +RD+A++E+MY +GL++SE++ L I+ ++L SG +++ + KER +PIG AV Sbjct: 125 GKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASG--YIVVRSGKERVIPIGSYAV 182 Query: 187 AWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 A ++ +++ + ALFL+ GKR++ + K E+ K + P+ LR SF Sbjct: 183 AALQEYIEKGRKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLPLTPNILRKSF 242 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 A HML++ DL+ VQE+LG+ + + + + VY+ HPRA Sbjct: 243 AQHMLQNGADLKTVQEMLGYEVNFGNNLLSLVSRSKMKEVYNKFHPRA 290 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 162/295 (54%), Gaps = 13/295 (4%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINF--ASENGLQSWQQCDVTMVRNFAVRSR 64 D+ R+L +L +E L+ +L Y R L + + AS+ L+ D+++ F + Sbjct: 18 DLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRRLRDADAADLSL---FLAQRL 74 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + G S+A +LS+LR F+ + + +P+ + RHLP +++ LL Sbjct: 75 QGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDALLA 134 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D L +RD AMLE +Y GLR+SELVGL LDLE+G V +GKGSKER +P+G Sbjct: 135 APDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIPVGE 194 Query: 184 NAVAWIEHWLDLRDLFGS-----EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A+ + +L R+ G+ + ALFL+ G+ +S + + K G+ + Sbjct: 195 VALETLHRYL--REARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSAFS 252 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRH+FATH+L+ DLR VQ +LGHA L+TT+IYTH+ L +++ HPR Sbjct: 253 PHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPR 307 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 157/293 (53%), Gaps = 8/293 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V + ++ E L+ ++ Y + +E I F L+ +C + + R+ G Sbjct: 7 VSNFTNWMQYEMGLAENSVKAYHQDIENYIAFT----LKPLVECGAQELVAYMTHLRKSG 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 ++ R+S + F+D+L+ + + +NP VS P LP ++ D++ +L++ D Sbjct: 63 ASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPD 122 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 ++ L RDR + E MY G+R+SELVGL + +D+ + V GKGSK+R +P+ + Sbjct: 123 MSSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLA 182 Query: 187 AWIEHWLDLR--DLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 ++ +LD+R L D+ LFLS+ GK++ V ++ + G+ +V PH LR Sbjct: 183 EKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKNVSPHTLR 242 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 HSFATH+L + DLR +Q LLGH +LSTT+ YT + + HPR ++ Sbjct: 243 HSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPRFRK 295 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 159/295 (53%), Gaps = 22/295 (7%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 YL Y +VE+ LS TL +Y+R + ++F S N +S + + F + +G + Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNK-KSILKATRKDIEKFLSERKEQGSKS 60 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDP 130 ++A ++ + + +LV +N + NP + + R LP++ L D +++D Sbjct: 61 RTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPES--------LTDTEVDDL 112 Query: 131 LAV---------RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LAV RD+A+ E+MY +GLR+SE+ L I + E + + GKG +ER +PI Sbjct: 113 LAVHNEKTDKGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPI 172 Query: 182 GRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A+ ++ ++ + G + LFL+ G +IS + K E K + +++ Sbjct: 173 NDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIY 232 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRHSFATH+++ DLR VQ +LGH++++TT+IYTH+D HL A HP+ Sbjct: 233 PHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQI-AKHPK 286 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 157/289 (54%), Gaps = 17/289 (5%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 +L L+ R+LS T+ Y+ L ++ GL + ++R +G Sbjct: 28 FLDELTYSRRLSGATVRAYRADLMPLLA-----GLDHISELSTPVIRAHLGAKHAEGAAR 82 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDIND 129 +SLA +++R F WLV++ L A+P+ +S PK +HLP+ + + + ++ + D Sbjct: 83 SSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSSED 142 Query: 130 -PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 +A RD A++E++Y G+R+ EL D+ ++ + V+GKG K+R +P G A A Sbjct: 143 SAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAPAEAA 202 Query: 189 IEHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 ++ WL +R F + + ALFL G R++ R ++ +W V PH LRHS Sbjct: 203 LKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-------DVSPHALRHS 255 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 AT M+E DLR VQE+LGH++L+TTQIYTH+ L V+ AHPRA Sbjct: 256 AATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_Q11CV1 Tyrosine recombinase XerC subunit n=7 Tax=Alphaproteobacteria RepID=Q11CV1_MESSB Length = 313 Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 10/293 (3%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS-----RR 65 +L L ER+L+P+TL Y+R + F + +G + CD+ +R +R+ R Sbjct: 20 WLSSLKEERRLAPLTLDAYERDTRQFLQFLTRHGGGAPGLCDIAALRPADLRAFLAARRI 79 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 G GA +L L+ +RSF +L + A A + AP+AP+ LPK + D R+ Sbjct: 80 DGAGARTLGRGLAGVRSFLRFLEKRGLANAAGAGALRAPRAPKGLPKPLTAADAKRVTSG 139 Query: 126 D---INDP-LAVRDRAMLEVMYGAGLRLSELVGLD-IKHLDLESGEVWVMGKGSKERRLP 180 + +P +A R+ A+ ++YG+GLR+ E +GL + L SG + V GKGSK R +P Sbjct: 140 EGQLAEEPWIAARNAAVFALLYGSGLRIGEALGLKGVDIAALRSGSLRVTGKGSKTRVVP 199 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 + + + L + LF G + +Q+ + L + PH Sbjct: 200 VLPVVGEAVAEYQRLCPYHLEAEAPLFRGARGGALQPAIIQREMQKMRSALNLPDTATPH 259 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 LRHSFATH+L GDLR +QELLGHA+LSTTQ+YT +D L +Y+ AHPR Sbjct: 260 ALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSRLLEIYENAHPR 312 >UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales RepID=A6TR58_ALKMQ Length = 294 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 173/291 (59%), Gaps = 5/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 + ++ YL E+ LS TL +Y+R ++ ++ + + + ++ T + + +++G Sbjct: 5 INNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKEG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 A++++ L++LRSF+ +L+ ++ +P + +PK + P + ++++ LL + Sbjct: 65 RAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQPL 124 Query: 128 ND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 N P +RD+AMLE++Y G+R++EL+ L+++ +++ G + +KER +PIG ++ Sbjct: 125 NTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCCN-NTKERVIPIGTLSL 183 Query: 187 AWIEHWLDL-RDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 ++ +++ RD F +E+ +LFL+ G R++ + K + + + + PH LR Sbjct: 184 IALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITPHTLR 243 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFATH++E+ DL+ VQE+LGH+++STTQ+Y L + VY+ HPRA Sbjct: 244 HSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >UniRef50_C2MBI5 Site-specific recombinase, phage integrase family/ribosomal subunit interface protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MBI5_9PORP Length = 403 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/299 (31%), Positives = 160/299 (53%), Gaps = 8/299 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVT--MVRNFA 60 +L ++ ++ YL +ER SP+TL Y+ +E+ + A E W+ D +VRN+ Sbjct: 5 ELEQTLDAFMEYLRLERNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDLVRNWI 64 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK---NIDVD 117 ++ L + ++ LSA+RSF+ +L + + +NP + + PK LP ++ Sbjct: 65 MQQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQAQIE 124 Query: 118 DMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 + + I+ ++ L+VRDR ++E +Y GLR +E+ L + +DL + + V+GKG KER Sbjct: 125 EALATIPIETDNFLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVVGKGRKER 184 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNV-QKRFAEWGIKQGLNNH 236 +P G + ++ ++ LRD F++ + +S +V Q + GL Sbjct: 185 IVPFGTDLREKMQDYITLRDQKVGTSQYFFVTLECRPLSGADVYQVVHKALSVVPGLPRR 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRHSFAT ML + + ++ELLGH+NL TT YTH F+ L +Y AHPRA+ Sbjct: 245 -GAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYH-AHPRAQ 301 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 393 e-108 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 393 e-108 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 392 e-108 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 392 e-108 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 390 e-107 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 390 e-107 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 389 e-107 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 389 e-107 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 387 e-106 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 387 e-106 UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 385 e-106 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 384 e-105 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 382 e-105 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 382 e-105 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 382 e-105 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 382 e-105 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 381 e-104 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 381 e-104 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 380 e-104 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 379 e-104 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 376 e-103 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 374 e-102 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 372 e-102 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 370 e-101 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 370 e-101 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 369 e-101 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 369 e-101 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 368 e-101 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 368 e-100 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 368 e-100 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 368 e-100 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 367 e-100 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 367 e-100 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 366 e-100 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 366 e-100 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 366 e-100 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 366 e-100 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 366 e-100 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 365 e-100 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 365 e-100 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 365 1e-99 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 365 2e-99 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 364 2e-99 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 364 2e-99 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 364 2e-99 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 363 3e-99 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 363 4e-99 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 363 4e-99 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 363 4e-99 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 363 4e-99 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 363 4e-99 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 363 6e-99 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 363 6e-99 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 362 7e-99 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 362 8e-99 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 362 8e-99 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 362 9e-99 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 361 2e-98 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 360 2e-98 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 360 3e-98 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 360 3e-98 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 358 1e-97 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 358 1e-97 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 358 1e-97 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 358 2e-97 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 357 2e-97 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 357 2e-97 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 357 3e-97 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 357 3e-97 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 357 3e-97 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 356 4e-97 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 356 4e-97 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 356 4e-97 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 356 6e-97 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 356 6e-97 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 356 6e-97 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 356 7e-97 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 356 7e-97 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 355 9e-97 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 355 9e-97 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 355 1e-96 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 355 1e-96 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 355 1e-96 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 355 1e-96 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 354 2e-96 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 354 2e-96 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 354 2e-96 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 354 2e-96 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 353 3e-96 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 353 3e-96 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 353 5e-96 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 353 6e-96 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 352 7e-96 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 352 1e-95 UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella den... 351 1e-95 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 351 1e-95 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 351 2e-95 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 350 3e-95 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 350 3e-95 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 350 3e-95 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 350 5e-95 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 349 7e-95 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 349 7e-95 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 349 9e-95 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 349 9e-95 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 348 1e-94 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 348 1e-94 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 348 1e-94 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 348 1e-94 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 348 2e-94 UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular orga... 348 2e-94 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 347 2e-94 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 347 2e-94 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 347 2e-94 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 347 3e-94 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 347 3e-94 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 347 3e-94 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 347 3e-94 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 346 4e-94 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 346 4e-94 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 346 6e-94 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 346 6e-94 UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacil... 346 6e-94 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 346 7e-94 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 345 1e-93 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 345 2e-93 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 344 2e-93 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 344 2e-93 UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira Rep... 344 2e-93 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 344 3e-93 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 344 3e-93 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 344 3e-93 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 343 3e-93 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 343 3e-93 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 343 5e-93 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 342 7e-93 UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomi... 342 7e-93 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 342 9e-93 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 341 1e-92 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 341 1e-92 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 341 1e-92 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 341 1e-92 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 341 2e-92 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 341 2e-92 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 341 2e-92 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 341 2e-92 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 341 2e-92 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 340 3e-92 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 340 3e-92 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 340 4e-92 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 339 6e-92 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 339 7e-92 UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desu... 339 7e-92 UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales ... 339 7e-92 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 339 8e-92 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 339 8e-92 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 339 8e-92 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 338 1e-91 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 338 1e-91 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 338 1e-91 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 338 2e-91 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 338 2e-91 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 337 2e-91 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 337 3e-91 UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 337 3e-91 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 336 5e-91 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 336 5e-91 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 336 5e-91 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 336 5e-91 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 336 6e-91 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 336 6e-91 UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum t... 335 8e-91 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 335 8e-91 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 335 8e-91 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 335 1e-90 UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax... 335 1e-90 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 335 1e-90 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 335 1e-90 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 334 2e-90 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 334 3e-90 UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobact... 333 4e-90 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 333 4e-90 UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n... 333 5e-90 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 333 6e-90 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 333 6e-90 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 333 6e-90 UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriace... 332 7e-90 UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferro... 332 1e-89 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 332 1e-89 UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepI... 331 2e-89 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 331 2e-89 UniRef50_A6LE90 Tyrosine type site-specific recombinase n=8 Tax=... 331 2e-89 UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella Rep... 330 3e-89 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 330 3e-89 UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alpha... 330 4e-89 UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Br... 330 5e-89 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 330 5e-89 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 330 5e-89 UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilag... 330 5e-89 UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulos... 329 7e-89 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 329 7e-89 UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID... 329 8e-89 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 329 8e-89 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 329 8e-89 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 329 9e-89 UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella a... 328 1e-88 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 328 1e-88 UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Prote... 328 1e-88 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 328 1e-88 UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes ... 328 2e-88 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 328 2e-88 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 327 2e-88 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 327 4e-88 UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales R... 327 4e-88 UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae ... 326 5e-88 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 325 9e-88 UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochlori... 325 1e-87 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 325 1e-87 UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteria... 325 1e-87 UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobact... 324 2e-87 UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychr... 324 2e-87 UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcu... 323 3e-87 UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroi... 323 5e-87 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 323 5e-87 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 322 8e-87 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 322 9e-87 UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteracea... 322 1e-86 UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga ... 322 1e-86 UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdema... 321 3e-86 UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteria... 320 3e-86 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 320 3e-86 UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyc... 320 3e-86 UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybac... 320 4e-86 UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepI... 319 5e-86 UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter ... 319 5e-86 UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acido... 319 6e-86 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 319 7e-86 UniRef50_B5ENS4 Integrase family protein n=2 Tax=Acidithiobacill... 319 8e-86 UniRef50_C6XMJ6 Integrase family protein n=1 Tax=Hirschia baltic... 319 1e-85 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 318 1e-85 UniRef50_C9LEJ3 Integrase/recombinase XerC n=1 Tax=Prevotella ta... 317 2e-85 UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipple... 317 3e-85 UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=... 317 3e-85 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 316 4e-85 UniRef50_Q8UC70 Tyrosine recombinase xerC n=18 Tax=Alphaproteoba... 316 4e-85 UniRef50_A9KMU3 Integrase family protein n=1 Tax=Clostridium phy... 316 5e-85 UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax... 316 5e-85 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 316 6e-85 UniRef50_D0L0D4 Integrase family protein n=1 Tax=Halothiobacillu... 316 7e-85 UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter seg... 316 7e-85 Sequences not found previously or not previously below threshold: >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 162/297 (54%), Positives = 217/297 (73%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 L+ + Y YL +E+Q S TL NYQRQL A+ + S+ G+ +WQ+ + VR Sbjct: 6 NTLYLQTKPYWDYLRIEKQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIA 65 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 +S ++GLGA S+ALRL ALR +F +L+ Q ++ NPA G+ APKA + LPKNID + + + Sbjct: 66 QSNKQGLGAKSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQ 125 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LL D ++P +RD AM+E+MY +GLRLSEL GLD+ +DL EV ++GKG+KER +PI Sbjct: 126 LLTSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPI 185 Query: 182 GRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 G A+ + WL +R+ F +D+A+FL+K G R+S R++Q +WG KQGL +H+HPHK Sbjct: 186 GSKALEALNRWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHK 245 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LRHSFATHMLE+SGDLR VQELLGH+NL+TTQIYTHLDFQHLA +YDAAHPRAKR K Sbjct: 246 LRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKK 302 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 151/299 (50%), Positives = 201/299 (67%), Gaps = 2/299 (0%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M L D+ +L +L ER LSP TL YQR L ++ +ENGL +R FA Sbjct: 1 MATLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFA 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+GL S+ LS+LRS F +LV + L NPA+GV+AP+ PR LP + D+ Sbjct: 61 AARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAA 120 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL+ +DPLA+RDRA+ E++Y +GLRL+E VGLD+ LDL G V V+GKG+K RR+ Sbjct: 121 RLLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRV 180 Query: 180 PIGRNAVAWIEHWLDLRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 P+G A ++ WL +R G+++ A+F+S+ G R+SAR+VQ R A G+ VH Sbjct: 181 PVGGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVH 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFA+H+LESSGDLR VQELLGHA+++TTQ+YTHLDFQHLA VYD AHPRA++G Sbjct: 241 PHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRARKG 299 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 392 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 182/298 (61%), Gaps = 6/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ ++ L+++ LS T+++YQR L F E ++ W++ D +++ F Sbjct: 1 MQRNLDYFVDSLAIQ-GLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ G +S + +S L+ FF +L + ++ NP + + PK + LPK + VD++ ++L Sbjct: 60 KQDGYATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVL 119 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D + L +RD+AMLE++Y G+R+SEL+ L + L LE G + +GKG+K+R +PIG Sbjct: 120 NSCDTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIG 179 Query: 183 RNAVAWIEHWLDLRDLFGSED----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + A W++H+L + ++ + LFL+ G + + K + + G++ V Sbjct: 180 QAATNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVS 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFATH+LE+ DLR VQELLGH+++STTQIYTHL + + +Y AHPRAK+ Sbjct: 240 PHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRAKK 297 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 392 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 177/302 (58%), Gaps = 10/302 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-----LQSWQQCDVTMVRN 58 + D++ +L YL VE+ S T Y+ L ++ FA + + W+ + Sbjct: 1 MRDDIQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLA 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + + + + ++ +++A +SFF+++V++ +LK NP + +S PK + LP I + Sbjct: 61 YMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQ 120 Query: 119 MNRLLDIDIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 + LL+ + A RD+AMLE++Y +G+R++ELV L++ +DL+ G V GKG KE Sbjct: 121 VRALLNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKE 180 Query: 177 RRLPIGRNAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 R +PI A I+ +L ++R + ALFL++ G R++ + + + + + GL Sbjct: 181 RMIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGL 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++ V PH LRHSFATHML DLR VQELLGHAN+STTQIYTHL +H+ Y+ AHPR Sbjct: 241 DDVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPR 300 Query: 294 AK 295 AK Sbjct: 301 AK 302 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 111/297 (37%), Positives = 175/297 (58%), Gaps = 6/297 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNFAVR 62 ++ +E +L +L VER LS T+ Y+R L +++ GL + + + F Sbjct: 1 MNDLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +R++G A S+A +++LRSFF +L+ ++ +P + PK + LPK +++DD+ +L Sbjct: 61 ARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKL 120 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L D + PL +RD+AM+E++Y GLR++ELV L + L L G + +GKG KER +P+ Sbjct: 121 LSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPL 180 Query: 182 GRNAVAWIEHWLDL-RDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G+ A +E +L+ R +D +FL+ G+ ++ + K + G+ + Sbjct: 181 GKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPI 240 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQELLGHA++STTQIYTH+ L VY HPRA Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 110/294 (37%), Positives = 175/294 (59%), Gaps = 4/294 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 ++ ++RYL Y+ +R SP TL Y+ L ++F G +R + Sbjct: 8 DNIQRFIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLA 67 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 ++K ++A +L+++RS + +L L+ NP + + PK + LP + V+D Sbjct: 68 FLKKKNPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEI 127 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL+ D + +RD+A++E +Y G+R+SELVG++I +D SG V V GKGSKER LP Sbjct: 128 LLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILP 187 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 +G +A+ I+ +L+ R ++++ALFL+K R++ R+V + ++ K ++ V PH Sbjct: 188 VGNHALNAIQLYLEKR---KADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPH 244 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+L++ DLR VQE LGH++LSTTQIYTH+ + L VYD HPRA Sbjct: 245 TFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 166/297 (55%), Positives = 222/297 (74%), Gaps = 1/297 (0%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + L ++++ YL E+ LS T NY++QLE + GL++W Q D VR A Sbjct: 11 SGLRKPLDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAG 70 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + R+G+ A+S+A RLS+LRSFFD+L+ + L ANPAKGVSAP+ R LPKN+DVD++N+ Sbjct: 71 KGMREGMKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQ 130 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LL+++ +DPLA+RDRA++E+MYGAGLRL+ELV +D++ + L SGE+ V+GKG+KER++P Sbjct: 131 LLEVNEDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPF 190 Query: 182 GRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 AV W+ WL +R + ALF+SKLG RIS R+VQKR AEWG KQ + +H+ PH Sbjct: 191 AGMAVEWVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPH 250 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 KLRHSFATH+LESS +LR VQELLGH N+STTQIYTHLDFQHLA VYD AHPRA++ Sbjct: 251 KLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARKK 307 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 152/293 (51%), Positives = 200/293 (68%), Gaps = 2/293 (0%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 + VE +L +L +ERQ+S TL Y+R L A+I +AS G + Q D +R F R Sbjct: 29 SAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHR 88 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 +GL SL RLSA RS++ WL+ + +PA + APKAPR LP+ +D D+ RL+++ Sbjct: 89 RGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEV 148 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + PL +RDRA+LE+ Y +GLRLSEL L + LDL+SG V V+GKG K+R +P+G +A Sbjct: 149 PTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHA 208 Query: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 VA + W RD GS +F + G IS R VQ R + ++QG+ HVHPH LRHS Sbjct: 209 VAALRAW--QRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLRHS 266 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 FA+H+LESSGDLRGVQELLGH++++TTQIYTHLDFQHLA VYDAAHPRAKR K Sbjct: 267 FASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRKK 319 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 108/291 (37%), Positives = 168/291 (57%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ YL YL+VE+ S TL Y R L E G++ + V + +RKG Sbjct: 6 IDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKRKG 65 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID- 126 L A S+ L+ALR F+ +L+ + +++ NP + K LP + ++M++LL Sbjct: 66 LSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQPG 125 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + A+RD AMLE+MY GLR+SEL+ L ++ + G + V GKG+KER +PIG+ A Sbjct: 126 VRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQVAY 185 Query: 187 AWIEHWL-DLRDL--FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + + ++R G++ + LFL+K G+ ++ + K ++ +K GL VHPH R Sbjct: 186 EHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHTFR 245 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFA+H+LE DLR VQ +LGHA++STTQIYTH+ +HL ++ HPR Sbjct: 246 HSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPRG 296 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 176/295 (59%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T +E YLR++ +E+ LS T+ Y+R L+ ++ +E+ + D +++ Sbjct: 1 METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +G A S+A +S +RSF + + + +P + +PK + LP ++VD++ LL Sbjct: 61 IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D+N RDR MLE++Y G+R+SEL+ L++++++L G V V GKG KER +P+G Sbjct: 121 ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG 180 Query: 183 RNAVAWIEHWLD-LRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + ++ +++ +R + + LFL+ GK +S + + K + G+K + + P Sbjct: 181 DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE+ DLR VQE+LGH+++STTQ+YTH+ + +Y+ HPRA Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 385 bits (990), Expect = e-106, Method: Composition-based stats. Identities = 188/294 (63%), Positives = 228/294 (77%), Gaps = 1/294 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L +ER+ YL ER+LS T NY+RQL I E + +WQQ D VR A + Sbjct: 6 LEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKG 65 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R GL A+SLA+RLSALRSFFD+LV QN LKANPAKGV+AP+ R LPKN+DVD+MN+LL Sbjct: 66 MRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLL 125 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D++ +DPLA+RDRAM+E+MYGAGLRL+ELVG+D++H+ L G++ V+GKG KER +P Sbjct: 126 DVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185 Query: 184 NAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A W+ WL LRD +E+ ALF+SKLG RIS RNVQKR AEWG KQ +++H++PHKL Sbjct: 186 LAREWVAKWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKL 245 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFATHMLESSGDLR VQELLGHANLSTTQIYTHLDFQHLA VYD AHPRAK+ Sbjct: 246 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 299 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 124/296 (41%), Positives = 191/296 (64%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + +YL YLSVE+ +S TL NY+ L +N+ E + S+ + D ++R++ Sbjct: 1 MQENFNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 KG+ S+A +LSA+RSF+ +L+ + ++ NP S+P+ + LP+ + ++++LL Sbjct: 61 IAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + P +RD+A +E++Y +GLR+SELV LDI++LDL S ++ V GKGSKER + +G Sbjct: 121 RMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMG 180 Query: 183 RNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ I+ +L+L R L + ALFL+ G R+SAR+ Q+R + + G+ HVHP Sbjct: 181 LPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRH+FATH+L+ DLR VQELLGH+NLSTTQIYTH+ VY ++HP AK Sbjct: 241 HMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAK 296 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 108/296 (36%), Positives = 174/296 (58%), Gaps = 5/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVR 62 + +E ++ YL+ E+ L+ + + Y+R L F EN S Q + F Sbjct: 1 MQNSIEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAW 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G +S+A LS+++S++ +L+ + EL NP+ + PK R LP+ + ++++++L Sbjct: 61 QLDQGAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKL 120 Query: 123 LDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ PL +RDRAMLE+MYG G+R+SEL+ L ++ L+ +G + MGKG KER +P+ Sbjct: 121 MEQPNPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPV 180 Query: 182 GRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + ++ W++ +L +R+ + LFL+ G+ +S + K + K L V Sbjct: 181 NQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQE+LGHA++STTQIYTHL L VY HPR+ Sbjct: 241 PHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 141/297 (47%), Positives = 191/297 (64%), Gaps = 1/297 (0%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + + Y+ E+Q SP T NY R LE + + G+Q + D VR Sbjct: 7 PFAEPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVAS 66 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R+GL SL LS+LR FF + + + + NPA G++APK P+ LPK +DVD + Sbjct: 67 LHRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQF 126 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + ++ +D + RDRA+LE++Y +GLRL+E+ L++ +D V V GKGSK R LP+G Sbjct: 127 VAVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVG 186 Query: 183 RNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+A ++ WL R+ + + ALF+++ GKRIS R VQ R + ++QG++N VHPH Sbjct: 187 SVAIAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHM 246 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LRHSFA+HMLESSGDLR VQELLGHAN+STTQIYTHLDFQHLA VYD AHPRA R K Sbjct: 247 LRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAGRKK 303 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 172/298 (57%), Gaps = 8/298 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS--WQQCDVTMVRNFAVR 62 ++E++ RYL +E+ SP T+ +Y+ +E FA ++ + ++R + R Sbjct: 5 RQEIEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLAR 64 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + ++A R++ALRSF+ +L + + NP K V PK + LP +D ++ L Sbjct: 65 LKADDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAEL 124 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 L++ +D L RD A+LE++Y G+R++EL GL +DL S V V GKG+KER +PIG Sbjct: 125 LELPADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIG 184 Query: 183 RNAVAWIEHWL-DLRDLFGSE-----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 R A A +E +L D R S+ LF++ G ++ R+V++ ++ + Sbjct: 185 RTAAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAVAKK 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH +RH+FATHML + DLR VQE+LGH NLSTTQ+YTH+ + L +VY HPRA Sbjct: 245 VSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 183/305 (60%), Gaps = 11/305 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT+ + +L ++ +++ S TL Y+ LE NFA ++ + ++R F Sbjct: 1 MTNTQFYITNFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAK----VEPEKVEPIVIRGFI 56 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KG ++A +LS LRSFF +L S+ +K NPA+ VS+ K R LPK + VDD Sbjct: 57 SEQILKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAF 116 Query: 121 RLLDIDINDPLAV-RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +L++ D V RD+A+LE+ Y +G+R+SEL GL+++ LDL+ G + V GKG KER + Sbjct: 117 KLVEAPSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIV 176 Query: 180 PIGRNAVAWIEHWLDLR------DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+G+ A ++ +L +R ++ LF++ G+RIS R V++ ++ G+ Sbjct: 177 PVGQKAKEALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGV 236 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + PH LRH+FA+H+L DLR +QELLGHA+LSTTQIYTH+D +HL VYD +HP Sbjct: 237 LEKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPL 296 Query: 294 AKRGK 298 +K + Sbjct: 297 SKEDE 301 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 112/296 (37%), Positives = 174/296 (58%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +E +L YL E+ +S T+ +Y+R LE INF + G+ + + + + V Sbjct: 1 MKDKLEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGI-NIKNLKREEWQRYLVAL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +K S+A ++S++RSF +L+ + + N + + PK P +LP+ +D ++ L Sbjct: 60 YKK-YKIKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFL 118 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 I PL +R+ A+LE Y G+R+SELV L+I+++DLE V GKG KER +P+G Sbjct: 119 KIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLG 178 Query: 183 RNAVAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 AV ++ +L +R LF +D +ALFL+K G+RI+ + V + GL V PH Sbjct: 179 DYAVESLKRYLSVRHLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVSPHT 238 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RHSFATH+L + D+R VQELLGH++++TTQIYTH+ L VY AHP +R Sbjct: 239 FRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRN 294 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 167/296 (56%), Gaps = 5/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + ++ ++ Y+ VER LS T+++Y+R L++ + +E + W + + Sbjct: 1 MKDQIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKH 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + G + A L+++RSF +L+ + +P+ + K R LPK + ++++ RL Sbjct: 61 LKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERL 120 Query: 123 LDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD + P RD+AMLE++Y G+R+SE++ L + L G + GKG KER +PI Sbjct: 121 LDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPI 180 Query: 182 GRNAVAWIEHWL-DLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A + IE ++ R + DALFL+ GK+IS + K + ++ G+ + Sbjct: 181 GEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQE+LGHA++STTQIYTH+ L VY HPRA Sbjct: 241 PHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 110/297 (37%), Positives = 175/297 (58%), Gaps = 5/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ +L YL +ER SP T+ Y+R + F S + D ++ F V Sbjct: 1 MAEELKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVD---LKQFLVDI 57 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 RK + A ++ ALRSF+ +L +K NPA + PK P+ LP+ + VD++ +++ Sbjct: 58 LRKNRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVI 117 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + + P +R+RA+LE+ YGAGLR+ E+ GL + LDL G V V GKG ++R +P+G Sbjct: 118 EGQENSTPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLG 177 Query: 183 RNAVAWIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + A+ ++ +L+ R F + + LFL++ G ++ R ++ ++ K GLN + PH Sbjct: 178 KYALDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHT 237 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 RHS+ATH+LE D+R VQELLGH LSTT+IYTHL + L VY HPR++ K Sbjct: 238 FRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRSREEK 294 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 6/302 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRNFA 60 DLH ++ +LRYL +ER S +TL +Y LE+++ + +E L Q ++ +R + Sbjct: 11 DLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYV 70 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 ++A RL+ LRSFF + + K NPAK + P+ R LP + D + Sbjct: 71 AYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIG 130 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ N + +RDRA+LE +Y AGLR+SELV L++ D ++ + V+GKG KER Sbjct: 131 TLLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIA 190 Query: 180 PIGRNAVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 PIG A + HWL+ R+ + DALFL++L R+++R+V + ++ ++ GL+ Sbjct: 191 PIGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKK 250 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRH+FATH+L+ DLR VQELLGH +L+TTQIYTH+ + L Y+ AHP A+R Sbjct: 251 TSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHAQR 310 Query: 297 GK 298 K Sbjct: 311 SK 312 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 114/298 (38%), Positives = 176/298 (59%), Gaps = 7/298 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 L ++ YLRY +ER LS T+ Y++ LE + F + G+ SW + + V F Sbjct: 4 NKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSW-PTEASDVDAFLA 62 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R +S++ +S++R F+ WL QN K NP + PK R LP ++ ++N Sbjct: 63 RQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEIND 122 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL DI L +RDRA+LE +Y G+R+SEL+ L+++ L + G V V+GKGSKER +P Sbjct: 123 LLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIP 182 Query: 181 IGRNAVAWIEHW-LDLRDLF----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 I A+ WI+ + ++RD G D+ +FL+ K+++ + + + ++ G+ Sbjct: 183 ISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGITK 242 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH LRH+FATH+LE+ DLR VQE+LGH+++STTQIYT+L +H+ VY HPR Sbjct: 243 DVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPR 300 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 118/298 (39%), Positives = 175/298 (58%), Gaps = 7/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L ER+LRYL VER SP T+LNY+ L A F S G +W + + +R++ + Sbjct: 5 LDPMAERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQL 64 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+ ++A R+S+LRSF+ +L+ + NP V PK + LP ++ +MN LL Sbjct: 65 HREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLL 124 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D++ L RDRA+LE +Y G R+SELVGL + LDL + ++GKG KER +P+G Sbjct: 125 ELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLG 184 Query: 183 RNAVAWIEHWLD-LRDLFGSE-----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 + + +L R + + D +F++ G ++AR+V++ + + H Sbjct: 185 HPCIRAMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQKH 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH +RH+FATH+L+ DLR VQELLGHA+LSTTQIYTH+ +ASVY HPRA Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 174/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + V +L +L +++LS TL +Y+R +E I + + +Q+ + T V + + Sbjct: 3 MEELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHL 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++KG ++++ L+++RSF+ +L + + +P + + +PK + LP+ + ++ LL Sbjct: 63 QKKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLL 122 Query: 124 DIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + +D RD+AMLE++Y G+R+SEL+ LD+ ++LE + KG++ER +PIG Sbjct: 123 EQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCN-KGARERIVPIG 181 Query: 183 RNAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +V ++ +L R+L ++ ALF++ GKR++ + K ++ + +N + P Sbjct: 182 SVSVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITP 241 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+LE+ DLR +QE+LGH+++S+TQIY L + +Y HPRA Sbjct: 242 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 177/295 (60%), Gaps = 2/295 (0%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MTD + ++ Y+ VE+ LS T+L Y+ + INFA + + S + + + +F Sbjct: 1 MTDCKEALNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRI-SLENFEHNDITDFL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + +GL S+ + +LR F+ +L S++ K NP ++ P P +LP + D+++ Sbjct: 60 WEMKTEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVD 119 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ I+ +D + +R++AMLE++Y AGLR+SEL+ L ++LE + ++GKGSKER + Sbjct: 120 LLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G A +I +L R + +D +F+S+LGK++S ++ G+N ++ P Sbjct: 180 PFGNKAKFFISIYLKKRRPCLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA+H+L+ D+R VQE+LGHA+++TTQIYTHLD + + HPR Sbjct: 240 HTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPRG 294 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 146/298 (48%), Positives = 204/298 (68%), Gaps = 3/298 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +D++RYL L E++ S T+ NY+RQLE ++ F + G +WQQ +R + Sbjct: 1 MESDIQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKR 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+G +S AL+LSA+R F ++L+S+ ++ NPA GV PK + LPKNIDVD +N L Sbjct: 61 HRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + ++P+ VRD+AM+E++Y +G+RL+EL +DI L + V+GKG+K R +P G Sbjct: 121 DQMPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFG 180 Query: 183 RNAVAWIEHWLDLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + WL R+ F D ALFLS+ G R++ R +Q+R A WG K GLN+ +HPH Sbjct: 181 NSSKKVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPH 240 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 KLRHS ATH+LESS DLR VQELLGHA++STTQIYTHLDFQHLA YDAAHPRA++ K Sbjct: 241 KLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKKK 298 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 173/301 (57%), Gaps = 9/301 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +ER+L+Y+ S T YQR ++ I + E + S++ D +V N+ Sbjct: 1 MEDLLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFL 60 Query: 64 RRKG------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 R KG + ++A +LS+LRSF+ +L + NP PK + +P+ + D Sbjct: 61 RDKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYD 120 Query: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ L+ D+N +RDR M E+MY GLR+SE V L + +D + + GKG KE Sbjct: 121 EIEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKE 180 Query: 177 RRLPIGRNAVAWIEHWL-DLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 R +P A + ++ D+RD++ + D+ ALF+++ GK+++ R VQ + K L+ Sbjct: 181 RLVPFYDLAKELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLH 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HVHPH RHSFATH+L++ DLR VQELLGH++LSTTQIY H+ + L + Y+ AHPRA Sbjct: 241 VHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRA 300 Query: 295 K 295 K Sbjct: 301 K 301 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 177/302 (58%), Gaps = 13/302 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ--------SWQQCDVTMVRNF 59 ++ +L L+ ER+ SP T L Y + L ++ +E+GLQ ++ D +R + Sbjct: 15 IDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRGY 74 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 +K +++A +LS+LRSF+ +L + + NPA+ V PK + + ++ VD+ Sbjct: 75 LGFLHKKNEK-STMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDEA 133 Query: 120 NRLLDIDINDPL-AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 LLD ++D L RDRAM E +Y G+R+SEL GL++ ++ + V+GKG KER Sbjct: 134 FALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKERI 193 Query: 179 LPIGRNAVAWIEHW---LDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +P+G A+ I+ + L + + +A+FL+K G R++ R++++ + GLN Sbjct: 194 VPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLNR 253 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 + PH LRH+FATHML++ DLR VQELLGHA++STT YTH+ L + YD AHPR + Sbjct: 254 PLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPRGE 313 Query: 296 RG 297 + Sbjct: 314 KS 315 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 368 bits (947), Expect = e-101, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 173/294 (58%), Gaps = 6/294 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++++L YL E+ LS T+ +Y+ L+ + + +E + C + + + + Sbjct: 4 KEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLN-CKKDDIVQYLLNLK 62 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 K + S+A LS+L+ FF +++ + + +P +G+ +PK LPK +++D++ RLL Sbjct: 63 EKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLS 122 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 + + +RD AMLE+MY +GLR+SELV L + ++ E+G + V GKG KER +PI + Sbjct: 123 VMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQR 182 Query: 185 AVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 ++ I+++L LR + + + +FL+ G+ ++ + + G G+ +V PH Sbjct: 183 SIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGV--NVTPHM 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 +RHSFATH+LE DLR +Q++LGH+++STTQIYT + L Y HPRAK Sbjct: 241 IRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRAK 294 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 179/301 (59%), Gaps = 6/301 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ +L Y+ VER+ SP T+ Y+R ++ ++ +E + SW V VR + Sbjct: 2 MKNEMQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVL 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+ +S++ LS+LRSF+ +LV + +++NP VS K LP+ D++ + + Sbjct: 62 HRENYNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFI 121 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + ID N L R++A++EV+Y G+R+SEL L ++ LDL++ + V+GKGSKER +PIG Sbjct: 122 NSIDGNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIG 181 Query: 183 RNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A +E +L+ R +++ +F++ LG ++ V+ + + GL + Sbjct: 182 DFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKI 241 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 HPH LRH+FATH+L + D+R VQELLGH +LS+TQIYTH+ + L Y PR+K G Sbjct: 242 HPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRSKAG 301 Query: 298 K 298 K Sbjct: 302 K 302 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 164/299 (54%), Gaps = 6/299 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T + ++ ++RY+ VE+ S T+ +Y +E +F E+ ++ VR++ Sbjct: 23 TKTNDSIQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLT 82 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 K S+A ++S++RS F +L+ + EL N PK LP + ++M+ Sbjct: 83 FLYDKAYARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDE 142 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + N PL RDRA+LE++Y G+R+ E LD+ +DL G +V GKG+KER +P Sbjct: 143 LFKAFEGNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVP 202 Query: 181 IGRNAVAWIEHWLD-----LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 IG A + +++ L SE LFL+ G ++ R++++ A+ + + Sbjct: 203 IGSFACDALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQK 262 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+ PH LRHSFATH+L + DLR VQELLGH +LSTTQ+YTH+ L VY HPRA Sbjct: 263 HIRPHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 140/295 (47%), Positives = 199/295 (67%), Gaps = 7/295 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V +L +L+ ER+LSP T+ YQR L G Q W V +R+ A R+G Sbjct: 12 VNTFLTHLASERRLSPHTVNGYQRDLIEARTLL---GSQPWDTLTVHDMRSLAASLHRQG 68 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-- 125 ++ LS LR+FF +L+ + + NPA + APK+ + LPK +DVD ++ LLD Sbjct: 69 KSGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGT 128 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 ++PLA+RD+A++E++Y GLRL+EL+ L++ +DL ++ V GKG+K R+LP+G+ A Sbjct: 129 SNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPA 188 Query: 186 VAWIEHWLDLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + + WL +R + D ALF+SK G+R+S +VQ+R +++GL+ H+HPHKLR Sbjct: 189 LTAVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLR 248 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HSFATH+LESSGDLR VQELLGHA+L+TTQ+YTHLDFQHLA VYD AHPRA+R K Sbjct: 249 HSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRRK 303 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 166/295 (56%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++ ++ YL VE + T+ YQ L+ I F + + ++ +F + Sbjct: 1 MDELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISE 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G S+ + ++R F+ +L+ + +L+ NP + +PK + LP + + + LL Sbjct: 61 KHRGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLL 120 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D+ L +R++A+LE++Y G R+SE+ + + ++LE G + GKGSKER +P+G Sbjct: 121 SAADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLG 180 Query: 183 RNAVAWIEHWLD-LRDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + A I+ +L +R LFLS+ G+ + N+ +K G+ + P Sbjct: 181 KKASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HKLRHSFATH+LE+ DLR VQE+LGH ++STTQIYTH++ QHL +++ HPRA Sbjct: 241 HKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 92/295 (31%), Positives = 171/295 (57%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +VE+++ +L +++LS TL +Y+R +E I + E + + + T V + + Sbjct: 1 MEANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++KG ++++ L+++RSF+ +L + +P + +PK + LP+ + ++ LL Sbjct: 61 QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D D +RD+AMLE++Y G+R+SEL+ L++ ++ + G + KG++ER +PIG Sbjct: 121 DQPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCN-KGTRERTIPIG 179 Query: 183 RNAVAWIEHWLDL-RDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + A + +L+ R+ + ALF++ GKR++ + K + + +N + P Sbjct: 180 SISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+LE+ DLR +QE+LGH+++S+TQIY + + VY HPRA Sbjct: 240 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 143/297 (48%), Positives = 197/297 (66%), Gaps = 6/297 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 T + + YL ERQ S T+ Y QL W +R +++ R Sbjct: 17 RTPITLFSDYLKFERQYSAHTVNQYVSQLG-FAALYFSKLCDDWFSVQGEHIRRYSMALR 75 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKA----NPAKGVSAPKAPRHLPKNIDVDDMN 120 K L +++L+LS +RS + +L ++N K NPA G+ PK + LPKN+DVD M Sbjct: 76 SKQLSGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMA 135 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 RLL+I ++PLA+RD+AM+E+MY +GLR+SELVG +++ + +GE+ V GKG+KER +P Sbjct: 136 RLLEIPDDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIP 195 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +G A+ ++ WL +R F + D+ A+FLS RIS R V+ R EWGIKQG+++ VHP Sbjct: 196 VGSKALNALKKWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHP 255 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 HKLRHSFA+H+LESSGDLR VQELLGH++LS TQ+YTHLDFQHLA VYD HPRAK+ Sbjct: 256 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 312 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 180/309 (58%), Gaps = 15/309 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-------LQSWQQCDVTMV 56 + ++ + RY+ +ER LS T NY L + EN ++WQ D MV Sbjct: 1 MDELIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMV 60 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R F R+ + ++A +L++LR+FF +L + +++ NP + VS P+ +++P + V Sbjct: 61 RAFLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSV 120 Query: 117 DDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 D++ LL++ D +RDRA+LE+ Y +G+R+SEL G++ + +D G + + GKG K Sbjct: 121 DEIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKK 180 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSEDDA-------LFLSKLGKRISARNVQKRFAEWG 228 ER +PIG+ A ++ ++ + + A LF+++ R+SAR+V + +++ Sbjct: 181 ERIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYV 240 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 GL + PH LRHSFATH++++ DLR +QELLGH +LSTTQ YT + L +VYD Sbjct: 241 SMSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYD 300 Query: 289 AAHPRAKRG 297 AHP+A+ G Sbjct: 301 RAHPKARGG 309 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 127/331 (38%), Positives = 178/331 (53%), Gaps = 44/331 (13%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-------------------- 46 ++ +LR+L VE+ S T+ +YQR L + A Sbjct: 8 HIDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPL 67 Query: 47 ---------SWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANP 97 Q D T VR F + +S+A +LSALRSFF +L + +P Sbjct: 68 PAEDPAAELDVAQLDATRVRAFVYSLHGRNKS-SSVARKLSALRSFFRFLRKNGIINDDP 126 Query: 98 AKGVSAPKAPRHLPKNIDVDDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLD 156 A ++APK +LP + VD++ LL++ D A RDRA+LE++Y GLR+SEL GLD Sbjct: 127 AAAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLD 186 Query: 157 IKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED------------- 203 + LDL G V V+GKG+KER +P+G AVA IE +L R + + Sbjct: 187 LAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARGA 246 Query: 204 DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263 D L ++ G R+++R++++ + + G+ V PH LRHSFATH+LE DLR VQEL Sbjct: 247 DPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQEL 306 Query: 264 LGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LGHA+LSTTQ YTHL+ HL +VYD AHP A Sbjct: 307 LGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 167/297 (56%), Gaps = 5/297 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L +YL YL +R + T+ +Y+RQ++ F E + + M+R + Sbjct: 5 TTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYLT 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + K L ++ +LSALRSFF++L+ + + NP + + K + P + +++ Sbjct: 65 KLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILG 124 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD I+ D L +R++AM+E+MY +GLR SE+V L + ++D +++ GKG+K+R +P Sbjct: 125 LLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYVP 184 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 A W+ ++ + R+ +++ +F++K G ++ R V+ Sbjct: 185 FHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTKK 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 +HPH +RHSFATH+L + D+R VQELLGH NLSTTQIYTH+ HL VY AHPR Sbjct: 245 IHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPR 301 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 170/310 (54%), Gaps = 18/310 (5%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF- 59 M +L V R+L +L+ +R SP T+ Y+ L +F + V + Sbjct: 1 MDELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRL 60 Query: 60 --------AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 + +R G +S+ +L+A+R+FF WLV +L+ NPA+ ++ PK + LP Sbjct: 61 YLASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLP 120 Query: 112 KNIDVDDMNRLLDIDIND----PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 ++++D L++ + P RD A+LE++Y +GLR+SEL GL + LD +G V Sbjct: 121 FHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMV 180 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEW 227 V GKG KER +P+G A+ +E +L R +D LFL G RI+ R V + W Sbjct: 181 RVQGKGGKERIVPVGSAALEALEQYLAGRGQLA-DDAPLFLGCRGARINRRTVAQLVKRW 239 Query: 228 GIKQGLN--NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLAS 285 G+ + PH LRH+FATHMLE DLR +QELLGH++LSTTQ YTH+ L Sbjct: 240 A--SGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLE 297 Query: 286 VYDAAHPRAK 295 VYD AHPRA+ Sbjct: 298 VYDKAHPRAR 307 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 114/308 (37%), Positives = 178/308 (57%), Gaps = 16/308 (5%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQ--QCDVTMVRNFAV 61 +H + ++LRYL VER + +T +Y+ L ++ ++ ++ + + + +R + Sbjct: 1 MHAAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 G S+A RL++LR+F+ + + +NPAK + P+ R LP + D++ + Sbjct: 61 ALHEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGK 120 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL+ +DP +RDRAMLE +Y AGLR+SELVG++ + LDL+ G V + GKGSKER P Sbjct: 121 LLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAP 180 Query: 181 IGRNAVAWIEHWLDLRDL-------------FGSEDDALFLSKLGKRISARNVQKRFAEW 227 +G A+ I+ WL R L +F +K GKR++ R+V + ++ Sbjct: 181 LGSFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKY 240 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 GL+ PH LRH+FATH+L+ D+R VQELLGH +L TTQIYTH+ L +VY Sbjct: 241 LKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVY 300 Query: 288 DAAHPRAK 295 + AHPRA+ Sbjct: 301 ERAHPRAR 308 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 176/295 (59%), Gaps = 6/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 H VE++L + +ER LS TL++Y+ L ++ + +N + ++ ++++ Sbjct: 27 HGLVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYR-LDFISLSGLQDYQGWLA 85 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 S A LSA+R F +L + +P+ + +PK P+ LPK++ + ++ LL+ Sbjct: 86 DADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLE 145 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D NDP+ +RD+AMLE++Y GLR++ELV L ++++ L G V V+GKG KER +P+G Sbjct: 146 APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGE 205 Query: 184 NAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV-HP 239 NAV WIE +++ R ++ D +F SK K+++ + R + + G++ + P Sbjct: 206 NAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSP 265 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L ++ HPRA Sbjct: 266 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 118/338 (34%), Positives = 172/338 (50%), Gaps = 44/338 (13%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE--------------------- 42 L +V +L LSVE+ S TL +Y+ L + + Sbjct: 13 LGPEVAGFLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDF 72 Query: 43 ----------NGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNE 92 GL + + +R++ +R+ ++A +LS LRSF+ +LV + Sbjct: 73 AAQQEEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADL 132 Query: 93 LKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSE 151 + NP GV PK R LP +D +++ LL D + PL +RDRA+LE++Y GLR+ E Sbjct: 133 VPTNPVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGE 192 Query: 152 LVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD------------LRDLF 199 LV L+ +D G V V GKG KER +P+G A+ + H+L Sbjct: 193 LVALNRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSL 252 Query: 200 GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRG 259 LFL+KLG R+S R+V++ + + L+ + PHK+RH+FATHML DLR Sbjct: 253 PEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRA 312 Query: 260 VQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 VQE+LGHA+LSTTQIYTH+ Q L + Y AHPR +R Sbjct: 313 VQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHPRQRRA 350 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 178/317 (56%), Gaps = 28/317 (8%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +++YL YL+VER LSP T +Y+R L F + G ++ C+ + F ++ + Sbjct: 6 EAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRG-KNIIACEGNDLFLFLLQEK 64 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL- 123 +G A +LA L+ LR FF +L+ + + +P + +S PK +HLP + +++L+ Sbjct: 65 NQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMG 124 Query: 124 ---DIDINDP--------------------LAVRDRAMLEVMYGAGLRLSELVGLDIKHL 160 D D P L +R+ AM+EV+YG GLR+SELVGL + + Sbjct: 125 EGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDI 184 Query: 161 DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD---LRDLFGSEDDALFLSKLGKRISA 217 E+ + GKG+KER +PIG A+ ++++L+ R + + LFL+ G ++ Sbjct: 185 IFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTR 244 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 + + +W G+ +++PHK RHSFATH+L+ DLR VQE+LGHA+++TTQIYTH Sbjct: 245 QGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTH 304 Query: 278 LDFQHLASVYDAAHPRA 294 L Q L V+ AHPRA Sbjct: 305 LSRQRLLEVFRKAHPRA 321 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 174/299 (58%), Gaps = 7/299 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M D VE++L + +ER L+ TL +Y+ L ++ + N + ++ ++ + Sbjct: 9 MQDF-GYVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYR-LDFISLSGLQQYQ 66 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + S A LSA+R F +L + +P+ + +PK P+ LPK+I + ++ Sbjct: 67 SYLVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVD 126 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LLD D NDP+ +RD+AMLE++Y GLR++ELV L ++++ L G V V GKG KER + Sbjct: 127 ALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLV 186 Query: 180 PIGRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLN-N 235 P+G NA+ WIE ++ R E D +F SK ++++ + R + + G++ + Sbjct: 187 PMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTD 246 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+ PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L ++ HPRA Sbjct: 247 HLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 101/289 (34%), Positives = 167/289 (57%), Gaps = 8/289 (2%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 +L + +E+ LSP ++ Y L + F + + V +R + + GL Sbjct: 18 AFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQ----EPPGVPEIRQYIDHLYQTGLS 73 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIN 128 S+ L+ LR+F+ +L+ + ++ +P + + P+ + +PK ++++++ R++ D+ Sbjct: 74 NRSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLA 133 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 PL +RDRAM+EV+Y +GLR+SEL L I LDLE + GKG+K+R +P+G+ AV Sbjct: 134 KPLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLA 193 Query: 189 IEHWLDL-RD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 + +L+ R L G LF++ G ++ + K A +G K G+ + + PH LRHS Sbjct: 194 VRAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHS 253 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 FATH+LE DLR VQ +LGHA++STTQIYTH+ L + + HPRA Sbjct: 254 FATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 167/297 (56%), Gaps = 5/297 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + V +L+++ E+ S T+ NY R L + + ++ + Q D +R F Sbjct: 11 QIDKAVSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFVAM 70 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 KGL +++ +++ L+SFF ++ +N NPA+ + PK + K ++D + L Sbjct: 71 LFDKGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIAL 130 Query: 123 LDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD D P +RD + E+MYG G+R+SELVGL++ +D + V GKG KER +PI Sbjct: 131 LDAPDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIVPI 190 Query: 182 GRNAVAWIEHWLDLR----DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 + I +LD++ + + +++A+F++K G R++ R+V++ ++ GL Sbjct: 191 ADMHIEMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPMDF 250 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH RHS+ATH+LE DLR +Q LLGH +L+TTQ YTHL+ L VYDA HP A Sbjct: 251 SPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 112/292 (38%), Positives = 173/292 (59%), Gaps = 4/292 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 ++ + L +E SP T+ Y+R + G+ + +R F + Sbjct: 21 HLQAFEDALQIEEGASPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDL 80 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 GL +S+ +SALR++F +V++ + +P + + +P+ R LP+ + VD++ RLL Sbjct: 81 GLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAP 140 Query: 127 -INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 +++ LA RDRAMLE+ YGAGLR+SE +G+ +K + LE V V+GKG+KER +PIGR+A Sbjct: 141 GLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSA 200 Query: 186 VAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + + +L +LR + G LFL+ G +S K ++ G+ V PH L Sbjct: 201 IGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIEKPVSPHTL 260 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE DLR VQE+LGHA+++TTQIYTH+D ++L SV+ HPRA Sbjct: 261 RHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 363 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 173/299 (57%), Gaps = 5/299 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFAVR 62 + ++ + YL+ E LS T+ Y R L+ +F + + L+ + + Sbjct: 1 MTYLIKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKS 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++KGL A +++ +L++++SF +L+ + E+ + ++ PK + LP + VD++ + Sbjct: 61 IKKKGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISI 120 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ ID + L +R+ A+LE++YG+GLR+SEL+ + +K + ++ V V GKGSKER +PI Sbjct: 121 LEVIDKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPI 180 Query: 182 GRNAVAWIEHWL-DLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN-NHVH 238 A+ I ++L RD L + D LF++ GK +S K + + L+ V Sbjct: 181 SDMAIIAIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVS 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFATH+LE+ DLR +Q LLGH ++STTQIYTH+ L VY+ HPRAK Sbjct: 241 PHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKEN 299 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 119/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS--WQQCDVTMVRNFAVRS 63 +E +L YL ERQ SP T+ Y+ +E F + Q D+ MVR + Sbjct: 8 EALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYLGWL 67 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G +S+ +L+ALR+F+ +L+ +++++P +S P+ + LP + +M +LL Sbjct: 68 NQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLL 127 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 I PL +RDRA+LE +Y +G+R++ELVG+D LDL +G V+GKG +ER +P+GR Sbjct: 128 SIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLGR 187 Query: 184 NAVAWIEHWL-DLRDLFG-----SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 AV +E++L R E ALFL+ LG R++ R V++R + + K L V Sbjct: 188 YAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALRRGV 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH +RH+FATH+LE DLR VQELLGH L+TTQIYTH+ L VY HPRA R Sbjct: 248 SPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASR 306 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 169/295 (57%), Gaps = 6/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 +H + ++ YL VER L+ T ++YQ+ L + + S+ ++ + D +++ F Sbjct: 1 MHGLIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPE-DFGVIQAFLKH- 58 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + AS++ +SALR F+ +L+ + +K++P + PK +HLP + +++ L+ Sbjct: 59 QNDTKAPASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALM 118 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D PL +RDRA+ E+MY GLR+SE+VGL + L L + V GKG KER +PI Sbjct: 119 AKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPIS 178 Query: 183 RNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A W+ +L R + + A+F++ G ++ + + K + G+ V P Sbjct: 179 PQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFAT +LE+ DLR VQELLGH+++STTQIYTHL QHL +VY HPR Sbjct: 239 HTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG 293 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 108/297 (36%), Positives = 168/297 (56%), Gaps = 8/297 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +E +L YL++ER S T +Y L + + E G++ ++ +R F Sbjct: 9 RKTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVK-PEEAAPGDIRKFIQELH 67 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 GL A+S+A +SA+RSF +L+++ NPA+ + PK R+LP + +++M LLD Sbjct: 68 EIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLD 127 Query: 125 IDIN----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + +RD+AMLE +Y G+R+SEL+GL +L ++ G V V GKGSKER +P Sbjct: 128 APLKRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVP 187 Query: 181 IGRNAVAWIEHWL-DLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 +G+ A++W++ +L +LR S D +FL+ G +S E + G+ + Sbjct: 188 VGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKPI 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH RHSFATH+LE DLR VQE+LGH+++ TQIYTH+D + V+ HPR Sbjct: 248 SPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPRG 304 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 135/298 (45%), Positives = 194/298 (65%), Gaps = 5/298 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L+ V++YL YL+ ++ SP T+ Y R ++ +I + G W +R+ V Sbjct: 7 PLNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVT 66 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +R+ L S+ LS+ RSFF +L+ QN +K NP G+ APK+PR LP ++D D ++++ Sbjct: 67 ARKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQV 126 Query: 123 LDIDI--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L+ I +DP+A+RD+AMLE+ Y GLRL+EL L++ +DL + V GKG+K R+LP Sbjct: 127 LNATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLP 186 Query: 181 IGRNAVAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 IGR A+ ++ WL R D +ALF++ G+R+ R +Q R A G H+HP Sbjct: 187 IGRQAITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHG--QHIHP 244 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H LRHSFA+H+L+SSGDLR VQELLGH+N+STTQ+YTHLD+QHLA VYD AHPRA+ Sbjct: 245 HMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQEK 302 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 113/297 (38%), Positives = 166/297 (55%), Gaps = 10/297 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASE--NGLQSWQQCDVTMVRNFAVRSRR 65 ++RYLRYL+ E + T Y L +I + +G+ + +R R Sbjct: 44 IDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLYA 103 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 G+ +SLA +L+A R FF +LV + +L ++P K + +PK R LPK + +++ LL Sbjct: 104 VGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLSA 163 Query: 126 D---INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++PLA+R+ AM+E+ Y +GLR++EL GLD+ +D G V V+GKG KER +P+G Sbjct: 164 AERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPVG 223 Query: 183 RNAVAWIEHWLDL-RDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A+ I +L R ALFL+ G+R+S R Q + L + Sbjct: 224 EQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALERGI 283 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRH+FATH+L+ DLR VQE+LGHA LSTTQIYTH+ + L +Y HPRA Sbjct: 284 SPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 167/301 (55%), Gaps = 7/301 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT+ V ++ YL +E+ S +T+ Y +E + F + G+ +++ R + Sbjct: 1 MTNKQRLVHLFIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYL 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + KGL +++ ++SALRSF+ +L+ + +K NP VS PK + +P + +++ Sbjct: 61 TEAYEKGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELK 120 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L + D++ PL R++A+LE++Y G+R+SEL L LDL V V GKGSK+R + Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 180 PIGRNAVAWIEHWLDLRDLFGSE------DDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P G A + +L+ L D +FL++ G ++ R V+ E K Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H+HPH LRH+FATH+L DLR VQELLGH+NLS+TQ+YTH+ L Y + HPR Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPR 300 Query: 294 A 294 A Sbjct: 301 A 301 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 117/301 (38%), Positives = 174/301 (57%), Gaps = 8/301 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT L +E++ +L E+ SP T+ NY L + E S +R + Sbjct: 1 MTSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYL 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 AS A RL++++SF+ +LV Q L A+PAK V +PK P+ LPK + V+++ Sbjct: 61 GTLSTDH-APASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVF 119 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +LD D+ L +RDRA+LE++YG GLR+SEL GLD+ +D V VMGKGSKER + Sbjct: 120 AILDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLV 179 Query: 180 PIGRNAVAWIEHWLDLRDLF------GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+ ++ +E +L R +A+FL+ G R++ R++ + + +K L Sbjct: 180 PVNAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCAL 239 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH +RHSFATH+L D+R +QELLGH++LSTTQ YT + ++ L VYD+AHPR Sbjct: 240 TRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHPR 299 Query: 294 A 294 A Sbjct: 300 A 300 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 362 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 124/297 (41%), Positives = 166/297 (55%), Gaps = 6/297 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D YL YLSVER S +T+ +Y L I+F E G+ V + Sbjct: 10 PFLPDRNDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYD 69 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 RR+G +S+ LSAL+ F +LV + K NPA VS PK P LP + V ++N L Sbjct: 70 LRRRGYADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNEL 129 Query: 123 LDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD D PL +RD+A LE++YG GLR SEL+ LD+ + G + VMGKGS+ER +PI Sbjct: 130 LDQPFKDGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPI 189 Query: 182 GRNAVAWIEHWLD-LRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G +A + +L+ R D A+ L+ G R+S + + G G + Sbjct: 190 GGSAQRVLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIG-RPDL 248 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HPH LRHSFATHMLE DLR +QE+LGH+++STTQIY H+D H+ Y AAHPRA Sbjct: 249 HPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRA 305 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 362 bits (930), Expect = 8e-99, Method: Composition-based stats. Identities = 110/294 (37%), Positives = 166/294 (56%), Gaps = 8/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSRRKG 67 E + YL VE+ SP+T+ NY + F ++ W Q V +R++ + + Sbjct: 18 EDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRD 77 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 L ++A R+S+LRSF+ +L + +K NP V PK + LP ++ ++N LL D Sbjct: 78 LSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPD 137 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 L RDRA+LE +Y G R+SELVGL + +DL + ++GKG KER +P+G V Sbjct: 138 CTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCV 197 Query: 187 AWIEHWLDL------RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +E +L +F++ G+ +SAR+V++ ++ L HV PH Sbjct: 198 AAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPH 257 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +RH+FATH+L+ DLR VQELLGH +LSTTQIYTH+ + L +VY+ HPRA Sbjct: 258 TIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 362 bits (930), Expect = 9e-99, Method: Composition-based stats. Identities = 118/295 (40%), Positives = 171/295 (57%), Gaps = 3/295 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL T V+ YL +L VER L+P+TL Y L ++ A +G+ + + D +++ + V Sbjct: 29 DLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVA 88 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + G+ A+S A LSA+R F +L+ + ++ +P V P+ R LPK + D++ L Sbjct: 89 LGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALL 148 Query: 123 LDIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ +RDRAML VMY AGLR+SE+V L + +D G V +GKG K R +P+ Sbjct: 149 IEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPL 208 Query: 182 GRNAVAWIEHWLDLRDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G A+A I+ +L+LR + LFLS G ++ + V K + G+ P Sbjct: 209 GEPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSP 268 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HKLRHSFATH+LE DLR VQ LLGHAN+ TT+IYTHL H+ + Y AHPRA Sbjct: 269 HKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 115/298 (38%), Positives = 168/298 (56%), Gaps = 5/298 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 L VE YL++L VER LSP TL Y L +++ S G++ Q + F Sbjct: 5 EALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLGFLR 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 GL A S A R A+R F WL S+ ++ +P +G++ PKA LP+ + +++ R Sbjct: 65 SLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVR 124 Query: 122 LLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L+ ++ PL +RD A+LE MY G R+SE L++ L L+ G V + GKGSK+R +P Sbjct: 125 LIAAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQRMVP 184 Query: 181 IGRNAVAWIEHWLDL-RDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G A+ + WL+ R + +F++K G R+S + R + + G+ Sbjct: 185 LGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGITRD 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PHKLRHSFATH++E DLR VQ LLGHA++STTQ+YTHL H+ YD HPRA Sbjct: 245 ISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 360 bits (926), Expect = 2e-98, Method: Composition-based stats. Identities = 119/297 (40%), Positives = 178/297 (59%), Gaps = 14/297 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA----------SENGLQSWQQCDVTMVR 57 V ++L+ LS E+ SP T+ Y L A + F E L+ + + VR Sbjct: 3 VTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPVR 62 Query: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 F + +K + +++ RLSAL+SFF++LV +++ NPA+GVSAPK PR +P+ + VD Sbjct: 63 GFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVD 122 Query: 118 DMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ LLD I + R+RA+ E+ Y G+R+SEL L++ +D ES V V GKG++E Sbjct: 123 ELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNRE 182 Query: 177 RRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 R +P+G A+ ++ + R E ALFL++ R S ++++ + GL Sbjct: 183 RLVPVGDRALKAVDDY---RTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVP 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH LRHSFATHML++ DLRG+QE+LGHA+LS+TQIYTH+ + L VYD AHPR Sbjct: 240 VSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHPR 296 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 9/298 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 +L ++ +L YL+VE L+ T +Y R L + + + + + Sbjct: 8 NNLEKEINLFLEYLTVELGLAYNTRESYGRDLRLFAGWIKK----PLEDVKREDILAYMR 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + S + +L+AL++FF ++ ++ L+ +P++ V A LPK + ++++ + Sbjct: 64 MLKVHQYAPTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQ 123 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L D+ P RDR MLEVMY G+R+SEL+ L ++LE+ V GKG+KER +P Sbjct: 124 LFSAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIP 183 Query: 181 IGRNAVAWIEHWL-DLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G+ A+ +++ +L +R LF G +DD+LFL+ G ++ + + +G+K GL Sbjct: 184 LGQYAIQYLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKP 243 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATHML++ DLR VQELLGHA++STTQIYTHL L V+D HPRA Sbjct: 244 LTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 118/297 (39%), Positives = 171/297 (57%), Gaps = 3/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L ++R+L +L VER L+ TL Y L + F E G + D + V Sbjct: 24 LAPVMDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCL-LAEVDEQTLFMHVVDL 82 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 RR+G+ +LA L+ LR FF + V + EL+A+PA + PK R+LP + D+M +L Sbjct: 83 RRRGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATIL 142 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D++D L RDR MLE+MY AGLR+SEL L D ++G V V GKG+KER +P+ Sbjct: 143 ARPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVH 202 Query: 183 RNAVAWIEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + A + +L D R F + A+FL++ GK +S + V K + G++ + PH Sbjct: 203 HVSCALVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHT 262 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 RHSFATH+LE DLR VQ LLGHA++S T+IYTH+ L +++A HPR +R + Sbjct: 263 FRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRRPR 319 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 169/298 (56%), Gaps = 7/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 D+ ++ YL ER LS T Y+ LE ++ +E G + W Q D + ++ Sbjct: 2 FDRDLNLFIDYLVTERGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAE 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R G A+LA RL A++ +L + LK + + +PK R LP + +++ L Sbjct: 62 RDLGRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFL 121 Query: 124 DI---DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + +P +R+RA+LEV+Y +GLR+SEL L + +D ++ + V+GKGSK R +P Sbjct: 122 KAFPASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVP 181 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 IG+ A+ + +L D+R L ++ +FLSK G+ ++ + + G++ + Sbjct: 182 IGKVALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKN 241 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH LRHSFA+H+L DLR +QE+LGHA++STT+IYTH+D LA+++ HPR Sbjct: 242 IHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPRG 299 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 118/294 (40%), Positives = 178/294 (60%), Gaps = 11/294 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 + +L+YL VE+Q SP T+ Y R L +A++ W+ C +R++ + + Sbjct: 10 QDFLQYLEVEKQASPHTVEVYARALRQFRAWAAD-SFPGWENCTPDQMRDWLFQELKDEA 68 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIN 128 +S+ LR +ALRSF+ +++ ++ L+ NP GVS P+ + LP + ++ M LL++ Sbjct: 69 ATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYK 128 Query: 129 D--------PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L RD A+LE+ Y G+RLSELVGLD+ +D V VMGKG KER LP Sbjct: 129 TAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERILP 188 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 +G A+A +E ++ + ++ LF+S++G R+SAR+VQ ++ + + PH Sbjct: 189 VGTPALAALETYVSM--ACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPH 246 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 K+RH+FATH+LE+ DLR VQELLGHA+LSTTQIYTH+ +A VY AHPRA Sbjct: 247 KIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA 300 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 173/305 (56%), Gaps = 14/305 (4%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D V Y+ +L+VE+ SP TL NYQR L + + ++ L + D + F Sbjct: 23 DASHMVAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDL-NIDSVDEPDIEQFIAD 81 Query: 63 SRR-------KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 RR L A+S A A+RS + + +L + A GV+ ++ + LP + Sbjct: 82 LRRGDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALT 141 Query: 116 VDDMNRLLDI----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 V+ +NRL++ + ++P+A+RDRA++E++YG G+R+SE + LDI +D V V+G Sbjct: 142 VEQVNRLIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVG 201 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGI 229 KG KER +PIG A+ I+ WL R D ALFL+ G R+ ++V K Sbjct: 202 KGRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAE 261 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + GL + V PH LRHS+ATH+L+ D+R VQELLGHA+++TTQIYT + +L VY Sbjct: 262 RCGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYAT 321 Query: 290 AHPRA 294 +HPRA Sbjct: 322 SHPRA 326 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 170/295 (57%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++RY+ +L++ER L+ +L +Y L +F N + + Q D ++ + V Sbjct: 1 MDRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 KGL S A L A+R F+ +L +N ++NP + + PKA LP+ + D + LL Sbjct: 61 EAKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D +R+ AMLE++YGAGLR+SELVGL + +DL + V + GKGS+ER +P G Sbjct: 121 EMPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFG 180 Query: 183 RNAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +A WL+ R ++ LF+++ G ++ + K ++ + G++ V P Sbjct: 181 SHARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE DLR VQ +LGHA++++TQIYTH+ Q+L ++ HPR Sbjct: 241 HTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPRG 295 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 114/297 (38%), Positives = 169/297 (56%), Gaps = 5/297 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRNFAVRS 63 V +L YL +R SP T+ Y LE F G + + + + Sbjct: 10 DPVALFLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADL 69 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+GL +S+ +LSALR+F+ +L + + +P ++ PK P+ PK ++VD L+ Sbjct: 70 HRRGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLV 129 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + +I DP +RD A+LEV+YG+GLR+SE +GLD H+DL+ V V+GKG KER +P+ Sbjct: 130 ETEITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLT 189 Query: 183 RNAVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A + +++ R F + A+FL K G R+S + + E ++ G + PH Sbjct: 190 GPAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPH 249 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 LRHSFA+HML++ DLR VQELLGH+ +STTQ YTHLD + VYDAAHP A + Sbjct: 250 TLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAAKK 306 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 170/299 (56%), Gaps = 4/299 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R+L+Y+SVER+ S TL YQ+ L A +F +G +Q VR + Sbjct: 30 MQEAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYL 89 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + S+ +LS+LRSFF + +SQ ++ NP + V + LP+ ++ +L Sbjct: 90 NEQAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLF 149 Query: 124 DI--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 D D A RDR +LEV+Y G+R+SEL L ++ L+LE + V+GKG+KER +P+ Sbjct: 150 DSLYKREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPL 209 Query: 182 GRNAVAWIEHWL-DLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G +A I +L LR + L L+ G +S R ++ R +Q +N ++P Sbjct: 210 GDSATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYP 269 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HKLRHSFATH+L DLR VQELLGHANLS+TQIYTH+ L S Y AHPRAK+ K Sbjct: 270 HKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRAKQAK 328 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 9/298 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + ++ ++ YL+VE L+ T +Y R L + + ++ + + Sbjct: 5 NKIEDEIALFMDYLTVEMGLARNTRESYGRDLRLFAVWVKK----PIKEISRDDILTYMS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + + S A +L+AL++FF ++ ++ ++ +P + V + LPK + VD++NR Sbjct: 61 VLKAQNYAVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNR 120 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + D++ P RDR MLEVMY G+R+SEL+ L + ++L S V GKG+KER +P Sbjct: 121 LFEAPDLDTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIP 180 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G A+ +++ +L +R F E+ LFL+ G ++ + + +G+K + Sbjct: 181 LGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAKS 240 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATHML++ DLR VQELLGH+++STTQIYTHL L ++YD +HPRA Sbjct: 241 LTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 163/314 (51%), Gaps = 22/314 (7%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE--NGLQSWQQCDVTMVRNFAV 61 + ++ +L+YL VER S T+ Y+ + + E +W Q + R F Sbjct: 1 MSAALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 G S+ +LSALRSFF +++ L NP + KA + LP + ++ ++ Sbjct: 61 SLFEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDL 120 Query: 122 LLDI-----------------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 L + + A RD AM+EV+Y GLR+SE GLD+ +DL Sbjct: 121 LTKAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIG 180 Query: 165 GEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQ 221 G V GKG KER +GR + + ++ LR G + +FL+K GKR++ R+ Q Sbjct: 181 GIARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQ 240 Query: 222 KRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 281 + + I L + PHKLRHSFATH+L++ DLR VQE+LGH NLSTTQIYTH+ + Sbjct: 241 RNLKNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAE 300 Query: 282 HLASVYDAAHPRAK 295 + VY AHPRAK Sbjct: 301 RMKEVYKEAHPRAK 314 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 166/292 (56%), Gaps = 5/292 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +++ +L ++ E+ LS T+ Y R ++ N+A + ++ +Q + + F + Sbjct: 15 EIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEPEHLIAFLGSLKSA 74 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-I 125 ++++ L +L+ FF +L + ++ NP+ + +PK + LP +D+++++ L++ Sbjct: 75 DYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQP 134 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D VRDRA+ E++YG+GLR+SE+ L I +D + V GKGSKER +PIG A Sbjct: 135 DNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSID--DQYIRVYGKGSKERIVPIGSQA 192 Query: 186 VAWIEHWLDLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + ++ +L L ++ +LF++ GK + ++ + E+ + G+ + PH LR Sbjct: 193 LMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAGITKTISPHTLR 252 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 HSFATH+L + DLR +Q+LLGHAN+S+T YT + HL + HP+ K Sbjct: 253 HSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPKWK 304 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 117/299 (39%), Positives = 185/299 (61%), Gaps = 8/299 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + ++ +L +L E+ LS T+ NY + L NF +E L W + +R+F Sbjct: 1 MRNELLDFLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAY 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + K ++ A +LSA+RS F +L + ++++N + ++ PK R LP+ + ++++ L Sbjct: 61 LKDKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEML 120 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++ +DP +RD+A+LEV Y +G+RL EL GLD+++LDL++G + V GKG+ ER P+G Sbjct: 121 INAPGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLG 180 Query: 183 RNAVAWIEHWL-DLRDLFGSED------DALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 A+A IE +L + R ++ DALFL+K G RIS R++++R ++ + + Sbjct: 181 SFALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEH 240 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHSFATH+LE DLR VQELLGH N+STTQIYTH++ + VY+ HPRA Sbjct: 241 RVSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 176/296 (59%), Gaps = 6/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQSWQQCDVTMVRNFAVR 62 + ++ Y+ L VER L+ +L +Y+R L+ + +E L++ + + +R+F + Sbjct: 1 MENFLQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRK 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +GL A S+ +S++R++ ++L ++ +K NPA+ + PK PR LP + + +++++ Sbjct: 61 LSNRGLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKI 120 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L I N P+A RD A+ E+MY GLR++EL + +S + V GKGSK+R +PI Sbjct: 121 LGIIPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPI 180 Query: 182 GRNAVAWIEHWLD-LRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G A ++++L+ R+ ++ +FLS+ G++++ + +W + V Sbjct: 181 GPIARENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEV 240 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRHSFATH+LE DLR VQE+LGH +++TTQ+YTHLD +HL V+ HPR Sbjct: 241 SPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 165/296 (55%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 D+E +L Y+++ER L+ T+ +Y+R L+ + G + W+ + Sbjct: 18 FADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSL 77 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ASLA +LSALRS +LV + + +S PKA R +P + +++ RLL Sbjct: 78 SSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLL 137 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D A+RDRA+LE+ Y +GLR+SEL GL ++ +DLE G + V GKG+KER +PIG Sbjct: 138 AAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKERVVPIG 197 Query: 183 RNAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ + +L R F LFL+K G +S + ++ + GL +V P Sbjct: 198 GKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGLTKNVKP 257 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRHSFATH+L DLR +QE+LGHA++STTQIYT ++ Q L +D HPR + Sbjct: 258 HGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPRNR 313 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 169/299 (56%), Gaps = 8/299 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL ++E Y+ YL ER SP TL +Y R L + E + VR++ Sbjct: 4 DLKREIENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEK---DLDFTNKRNVRSYIQF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +K ++ ++ +LRSFF++L++ ++ + + PKA + LP+ + VD++ +L Sbjct: 61 IAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKL 120 Query: 123 LDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ ++D + +RDRA++E +Y G+R+SELVG++ + ++ GE+ V GK +KER + + Sbjct: 121 LNSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIV 180 Query: 182 GRNAVAWIEHWLDL--RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G + ++ + D L + A FL+ G RIS R ++ ++ N V P Sbjct: 181 GEETLKILQLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTKD--FNKKVSP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 H LRH+FATH+LE DLR VQELLGH +STTQIYTHL + + Y +HPRA + + Sbjct: 239 HTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAIKKE 297 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 92/292 (31%), Positives = 161/292 (55%), Gaps = 4/292 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + D+E + YL+ E+ L+ TL Y+R L + F + + +W Q + + ++ Sbjct: 1 MIRDLEDFFIYLASEKGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALK 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +++ +AS+ L A++ F +L + + N + PK + +P + +++++R+L Sbjct: 61 QQQHYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRIL 120 Query: 124 DID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 I I RD+A+LE +Y GLR+SEL L I +D V V+GKG KER +PIG Sbjct: 121 AIPNIQTWRGARDKAILETLYACGLRVSELCQLKIYDVD--DTFVRVLGKGGKERIVPIG 178 Query: 183 RNAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + A+A I+ +L R+ S ++ LF++K K ++ V K + + + + PH Sbjct: 179 QQAIAAIDGYLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHT 238 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 RH+FATH+L+ DLR +Q++LGHA++++T YTH+ L + A HPR Sbjct: 239 FRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 114/299 (38%), Positives = 174/299 (58%), Gaps = 9/299 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 VE+++ YL R LS TL +YQ L + + S + Q D +R + + Sbjct: 8 SNQVEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENV-DLTQVDHKNLRLYLAYLK 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + A +L LSALR F+ W+ + + +PA +S P+APR+LP + D+NRLL+ Sbjct: 67 QAQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLE 126 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D++ +RDRA LE +Y G R+SE+ L ++ +DL++G V + GKGSKER +P+ Sbjct: 127 SCDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYE 186 Query: 184 NAVAWIEHWLD-------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +A+ W++ +L L+D G ALF+S G +SA +++K F+ + GL++ Sbjct: 187 SAIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSS 246 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 + PH +RH++AT +L DLR VQELLGH +LSTTQ+YTHL L AAHPR+K Sbjct: 247 LSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRSK 305 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 155/310 (50%), Gaps = 17/310 (5%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T + V YL+++ VER L+ TL Y+R L + + G Q V F Sbjct: 51 TKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPGDITRHHVTGFVR 110 Query: 62 RSRRKG-----LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 LG S A + A+R + + ++PA V P A + LPK I V Sbjct: 111 ALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAITV 170 Query: 117 DDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG-------EVW 168 D++ R+L+ + +RDRA+LE +Y G R+SE VGLD+ + L V Sbjct: 171 DEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAIVR 230 Query: 169 VMGKGSKERRLPIGRNAVAWIEHWL-DLRDLF---GSEDDALFLSKLGKRISARNVQKRF 224 + GKGSKER +P+G +E +L R L G ALFL+ G RIS ++ Sbjct: 231 LFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTIL 290 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 K + V PH LRHSFATH+LE D+R VQELLGHA+++TTQ+YT + L Sbjct: 291 KVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLR 350 Query: 285 SVYDAAHPRA 294 VY AAHPRA Sbjct: 351 EVYAAAHPRA 360 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 169/296 (57%), Gaps = 5/296 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + D+ R+ YL E+ S T+++YQR L+ + ++ S G++ Q T + ++ ++ Sbjct: 10 QIQQDMRRFADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQ 69 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++G +S++ ++++R+FF +LV + +P+ + AP + P+ + +++ +L Sbjct: 70 MEKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQL 129 Query: 123 LDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ ++ +RD+AMLE++Y G+R+SEL+ + + +++ G V KER +P Sbjct: 130 LNQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCRD-SDKERVIPF 188 Query: 182 GRNAVAWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A ++ +L+ L G E + LF++ GK +S + K + + G+ + Sbjct: 189 GTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDIT 248 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSF H++++ DLR VQE++GH+++STTQIY ++ + + +Y AHPR Sbjct: 249 PHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPRG 304 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 106/290 (36%), Positives = 162/290 (55%), Gaps = 7/290 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + YL + +SP T Y L +N L W D++ V + + G Sbjct: 21 LQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDV---LIELTKVG 76 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 S+A LSALR F+ +L Q NP +PK R LPK++ +D+ L+ D Sbjct: 77 KSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPD 136 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 I L +RDRAM EV+Y GLR+SEL+ L ++ ++L+ G + + GKG+KER +P+G+ A Sbjct: 137 ITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYAC 196 Query: 187 AWIEHWL-DLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 W+E +L + R L+ S D LFL++ G +S +N + ++ + + PH LRH Sbjct: 197 DWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAELSPHTLRH 256 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +FATH+L DLR VQ LLGH++LSTTQIYTH+ + +++ HPR Sbjct: 257 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPRG 306 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 4/288 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 + YLS ERQLS T+ Y + F EN + Q + + ++KGL Sbjct: 5 DFKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENN-TAPQNVRPDFIDEYIYHLKQKGLS 63 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND 129 S+ + A++SF+ +L+ ++K +P + + +PK + +P+ + ++++RLL Sbjct: 64 PKSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKT 123 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 +R +LE+ Y GLR+SELV L I+ ++L+ V GKG+K+R +PI AV + Sbjct: 124 FAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVL 183 Query: 190 EHWLDLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 E +L R+ + ++ +F++K GK+IS +V K + G G+ +HPH RH+F Sbjct: 184 EIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFRHTF 243 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ATH+L DLR +QE+LGHA+L TTQIYTHLD Q L + HPR Sbjct: 244 ATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPRG 291 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 172/298 (57%), Gaps = 6/298 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + V +L +LS+E+ S +T+ +Y LE + F G+ + + + ++ Sbjct: 16 PLLSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVAD 75 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G AAS+ +SAL+ F +LV + ++PA + P P LP + +D +N L Sbjct: 76 LSGRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTL 135 Query: 123 LDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD + + PL VR+ LE++YG GLR SEL GLD L+ G + ++GKGS+ER +PI Sbjct: 136 LDQEFREGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPI 195 Query: 182 GRNAVAWIEHWLD-LRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G +A + +L+ R L S A+ L+ G R+S +++ E G G+ + Sbjct: 196 GGSAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGI-KDL 254 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 HPH LRHSFATH+LE DLR +QE+LGH+++STTQIYTH+D H+ Y +AHPRAK Sbjct: 255 HPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRAK 312 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 174/298 (58%), Gaps = 8/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ VE +LR+L+ ER LS T+ Y+ LE F L +W V F + Sbjct: 1 MNEQVEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R + ++++A R++A++SFF +L + ++ +P + + +PK R LP+ + ++ LL Sbjct: 61 RERRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELL 120 Query: 124 DIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ + P +RD+AMLE++Y G+R+SELV L++ +DLE EV +GK + R LPI Sbjct: 121 ELPLRSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPI 180 Query: 182 GRNAVAWIEHWLDL-RDLF----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +A +E + D+ R+ GS +ALFL+ GKR++ + ++ + GL+ Sbjct: 181 NGSAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLS-D 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFA HML + DLR VQELLGH ++STTQIYTHL+ + + + PRA Sbjct: 240 LTPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRA 297 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 169/287 (58%), Gaps = 3/287 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 ++L L ER LS T+ Y++ ++ F + G ++ D + F + R++G Sbjct: 12 KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGC-NFNSIDDEYIMLFIIWLRKRGDS 70 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIN 128 + +LA RLS++R+FF W V ++ L +NPA + PK P LP + D+M RLL DI Sbjct: 71 SRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDIT 130 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 + L RD+ +LE++Y +G+R+SEL+G+ + D + G + V GKG KER +P+ +A+ Sbjct: 131 NKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKL 190 Query: 189 IEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + H++ +R +F + LFL++ GK ++ + + K + + +N + PH RH+FA Sbjct: 191 LIHYVQKIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTFRHTFA 250 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 TH+LE DLR VQ LLGH ++S T++YTH+ L ++ HPR+ Sbjct: 251 THLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRS 297 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 161/298 (54%), Gaps = 5/298 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + D ++ +L+ +R LS T +Y R L+ I++ + ++Q + + Sbjct: 1 MERDAASFISFLAGQRGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G A++ LR+FF +L+ + ++ +P + PK + P+ + V++ RLL Sbjct: 61 KDLGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLL 120 Query: 124 DID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + PL +RD+AMLE++Y G+R+SEL+ L+ ++LE + G+ KER LP G Sbjct: 121 EAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFG 180 Query: 183 RNAVAWIEHWLDLRDLF----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 W++ +L E+ ALF ++ G RIS + K ++G + G+ + + Sbjct: 181 GVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSDIT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFA H+LE D+R VQELLGH++ ST Q+Y +L +VYDA HPR R Sbjct: 241 PHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPRTMR 298 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +++++RY+ VE+ S T+ +Y++ ++ F S G+ + VR F K Sbjct: 9 IDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDKK 68 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR-LLDID 126 S+A +LSALRSF +L+ + + NP PK LP + ++M LL + Sbjct: 69 YARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLALP 128 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 N PL RD+A++E++Y G+R+SE L + D S V V GKG KER +P+G+ AV Sbjct: 129 ANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMAV 188 Query: 187 AWIEHWL-DLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + +E ++ + R +D LFL+ G +S R+++K + + + + PH + Sbjct: 189 SAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQKKISPHAI 248 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+L + DLR VQELLGH +L TTQ+YTH+ + L +VY AHPRA Sbjct: 249 RHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 134/296 (45%), Positives = 192/296 (64%), Gaps = 6/296 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 H ++ YL +L ER+ S +T +Y R L + ++ L + V+ +R + + Sbjct: 24 HAYLQGYLAWLLGERRYSKLTAESYARDLAHLFELSTGLALNELK---VSHIRRYIAQLH 80 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 GLG SLA LSA R F+++L+ + NP G+ APK+ R LP+ + D R++D Sbjct: 81 SSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVD 140 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL--DLESGEVWVMGKGSKERRLPIG 182 + + P ++RD+AM E+ Y +GLRL EL+ LD + + D+ +GEV V GKG K R +P+G Sbjct: 141 LPTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLG 200 Query: 183 RNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A++ + WL +R + + ALF+ G RIS R VQ R +WGIKQG+ + VHPH Sbjct: 201 GCAISALHEWLAVRPTLANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHM 260 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 LRHSFATH+L+SSGDLR VQE+LGHA++STTQ+YTHLDFQ+L+ +YDAAHPRAKR Sbjct: 261 LRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAKRK 316 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 170/294 (57%), Gaps = 3/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + +E +L+Y++VE+++S T Y L + ++ G++ W + + + Sbjct: 2 MRSHIESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEEL 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G ++SL +S++R F L +P+ + +PKA + LP ++ RLL Sbjct: 62 SQAGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLL 121 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + +DPL++RDRAMLE++YG G+R+SEL+GLD+ L E G + GKG + R +P+ Sbjct: 122 DSVPTSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVS 181 Query: 183 RNAVAWIEHWLDLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +++E ++ L G E +ALFL+ G R+S + K G+ + PH Sbjct: 182 SVAQSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATH+LE+ DLR +Q++LGHA+L+TTQ+YTH++ L VY HPRA Sbjct: 242 VLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 107/290 (36%), Positives = 161/290 (55%), Gaps = 7/290 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + YL + +SP T Y L L W D+ V + + G Sbjct: 21 LQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDV---LIELTKAG 76 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 S+A LSALR F+ +L Q + NP +PK R LPK++ D+ L++ D Sbjct: 77 KSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPD 136 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 I+ L +RDRAM EV+Y GLR+SEL+ L ++ ++L+ G V + GKG+KER +P+G+ A Sbjct: 137 ISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYAC 196 Query: 187 AWIEHWL-DLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 WIE +L + R L+ S D LFL++ G +S +N + ++ + + PH LRH Sbjct: 197 DWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRH 256 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +FATH+L DLR VQ LLGH++LSTTQIYTH+ + +++ HPR Sbjct: 257 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPRG 306 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 172/298 (57%), Gaps = 4/298 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ L ++ +L ++ VE+ L+ ++ Y R L + E G+ +W++ + ++ Sbjct: 17 MSALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHL 76 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+GL S A LSA+RS L ++ A+P+ + +P+ R LP + D+++ Sbjct: 77 AELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVD 136 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL D+ +RDRAMLE++Y GLR+SELV L + ++LE+ + GKG KER + Sbjct: 137 RLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196 Query: 180 PIGRNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A ++ +L + R L G LF++ G R++ + K + G+ Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 256 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PHKLRHSFATH+LE DLR VQE+LGHA++STTQIYTH+D H+ +YD HPRA Sbjct: 257 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 145/278 (52%), Positives = 176/278 (63%), Gaps = 6/278 (2%) Query: 20 QLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSA 79 SP T Y+R L+A+ G Q +R R KG SLA LSA Sbjct: 38 GKSPHTRSAYRRDLQALAAL---QGAQDPATLTAQQIRLAVARLHAKGHIGRSLARMLSA 94 Query: 80 LRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI--DINDPLAVRDRA 137 R FFDWL+ Q +L ANP G+ PK+P+ LPK + VD + LLD D D LA+RD+A Sbjct: 95 WRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKALPVDATSALLDAPIDPEDDLALRDQA 154 Query: 138 MLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRD 197 M E++Y GLRLSEL GLD+ LDL G + GKG+K R LPIGR A +E WL +R Sbjct: 155 MFELLYSCGLRLSELTGLDLADLDLGEGLLTAHGKGNKTRILPIGRQARQALERWLAIRP 214 Query: 198 LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDL 257 + A+F K G+R+S R V+KR +W + G + HVHPH LRHSFA+H+L+SSGDL Sbjct: 215 S-QPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDL 273 Query: 258 RGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 R VQELLGHANLSTTQIYT LDFQHLA VYDA HPRAK Sbjct: 274 RAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRAK 311 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 353 bits (906), Expect = 5e-96, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 156/296 (52%), Gaps = 9/296 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + +L YL E L+ T+ Y R ++ + + +T + +F Sbjct: 33 QAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGR---RPADLTITELSDFVASLH 89 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +GL AS++ + A+R+FF +L + NPA+ ++ KA + +P + +++ L Sbjct: 90 GEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLS 149 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 +D RDRA+LEV+Y G R SE+ L ++ L L+ + GKG K+R +PIG Sbjct: 150 AVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGG 209 Query: 184 NAVAWIEHWLDLRDLFGSEDDA-----LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A+ I+ +L+ ++ + LFLS+ GK + + + + + G+++ + Sbjct: 210 RAIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDEIS 269 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+L DLR VQE+LGHA++ TTQIYTH++ L V+ HPRA Sbjct: 270 PHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 161/295 (54%), Gaps = 7/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++ +L YL VE+ + T+ Y R L + F E + DVT F + Sbjct: 1 MDRYLDLFLNYLLVEKGAAANTVSAYSRDLNRYLLFLGEREPDGIRPSDVT---GFLAKL 57 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G+ S A LSALR +L+ + + NP + APK R LP + ++ LL Sbjct: 58 KGEGIAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALL 117 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++ +RD+AMLE++Y GLR+SELVGL + ++L +G + +GKG KER +P+G Sbjct: 118 SSPLDTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMG 177 Query: 183 RNAVAWIEHWLDLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +A +L ++ A LFLS+LG +S + + ++ G+ + P Sbjct: 178 ESACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISP 237 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE+ DLR VQ +LGHA+LS+TQIYTH+ + + ++ HPR Sbjct: 238 HTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPRG 292 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 352 bits (905), Expect = 7e-96, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 166/295 (56%), Gaps = 5/295 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V+ Y RYL +ER SP TL+ YQ L +++F + + + +++FA + Sbjct: 12 VKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLD-VRLEDLQHFAGQLHEHD 70 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 +G S A LS +RSF+ +LV ++ +P + + +P+ HLP+ + ++++ + + ID Sbjct: 71 IGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSID 130 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 ++ P R++A++EV++ GLR+SELV L + +L L+ G + V GKG+KER +PI A+ Sbjct: 131 LSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPISPKAI 190 Query: 187 AWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + W R+L E D +FL++ G ++ + + G+ + PH LR Sbjct: 191 KELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQKTISPHTLR 250 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HSFAT +L+ DLR +Q +LGH ++ TT+IYTH+D L HPR + + Sbjct: 251 HSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPRNAKDR 305 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 160/298 (53%), Gaps = 7/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS---ENGLQSWQQCDVTMVRNFA 60 + + + YL++E SP T+ Y+ LE +F ENG + V +R+F Sbjct: 1 MEKYIADFCNYLALE-GKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFF 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 K SLA + +AL SFF + ++ NP + + PK LPK +++ Sbjct: 60 RFLNEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVR 119 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL I D + P +R++A+LE +Y +GLR+SEL G+ ++ +DL+ G V V GKG+K+R + Sbjct: 120 TLLSIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 P+G A+ I ++L +R F E+ LFL+K GK + + + Sbjct: 180 PLGSYAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGY 239 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHSFATH+L DLR +QELLGH+ LSTT+ YTH+ + + Y HPR+K Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRSK 297 >UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S88_SHEDO Length = 321 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 155/310 (50%), Positives = 203/310 (65%), Gaps = 21/310 (6%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFA--------------------SENGLQSWQ 49 R+ RYL+ ERQLSP T+ NY +L + S + W Sbjct: 9 RFERYLTSERQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTDEQWL 68 Query: 50 QCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRH 109 ++ + R+GL SL+L LSAL+ FF++L++++ + NPAKG+SAPK + Sbjct: 69 ALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQAKP 128 Query: 110 LPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV 169 LPKNIDVD ++ LL ID +DPL +RDRA++E+ Y +GLRL EL L+ + L EV V Sbjct: 129 LPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVKV 188 Query: 170 MGKGSKERRLPIGRNAVAWIEHWLDLRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWG 228 +GKG KERR+P+G+ A+ + W R L +++ ALF+S GKR+S R++Q R A+WG Sbjct: 189 LGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKWG 248 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 Q L+ VHPHKLRHSFATHMLESSGDLR VQELLGHANLSTTQIYT LDFQHLA VYD Sbjct: 249 QNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYD 308 Query: 289 AAHPRAKRGK 298 AHPRAK+G+ Sbjct: 309 GAHPRAKKGR 318 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 119/301 (39%), Positives = 173/301 (57%), Gaps = 8/301 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + E ++ ++ R SP T +Y R LE + +E + + Q D ++ ++ Sbjct: 14 QLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVTL 73 Query: 63 SR-----RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 R R + +S + LS LRSF+ +L+ +K NP +G+ APK R +P+ + D Sbjct: 74 LRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTFD 133 Query: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 M L D D+NDP A+R+RA+LE MY GLR+SE+ L + LDL + V GKG K+ Sbjct: 134 QMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDKQ 193 Query: 177 RRLPIGRNAVAWIEHWL-DLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 R +P + + +L D R L+ E+ +F+S+ G I+ R VQ A+ G GLN Sbjct: 194 RIVPFYKRLRTLLTRYLRDSRALYLKEEHGFVFVSQRGAPITPRAVQLILAQAGQDAGLN 253 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH LRHSFATH+L++ DLR VQELLGH++LSTTQIYTH+ L DAAHP + Sbjct: 254 QPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHPHS 313 Query: 295 K 295 K Sbjct: 314 K 314 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 171/318 (53%), Gaps = 23/318 (7%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M V ++L ++ VER LS T+ Y L +++ E G+ V + Sbjct: 1 MDGCERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYV 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 G A S A RL+++ +F + +S++ + + A V APK LP + VD++ Sbjct: 61 ASLDDSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVM 120 Query: 121 RLLD----------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 RL+D +DP+ +RD+A+LE MY G R+SE G+D+ +DL+ Sbjct: 121 RLMDSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDD 180 Query: 165 GEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLFGSEDD------ALFLSKLGKRISA 217 +MGKGSK+R +P+G A + +L R + S+ A+FL+K GKR+S Sbjct: 181 KVARLMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSR 240 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 ++V + G + + +HPH LRHSFATH+++ D+R VQELLGHA+++TTQIYTH Sbjct: 241 QSVWEIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300 Query: 278 LDFQHLASVYDAAHPRAK 295 + ++L Y AHPRA+ Sbjct: 301 VSPENLIEAYLTAHPRAR 318 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++ +L L + LS TL Y+ L + GL+ + VR + Sbjct: 8 DPLIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLR-LRDVGQADVRAYLAYRV 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL- 123 + S A LS+LR F+++L+ ++ +P + +PK RHLP ++ ++RLL Sbjct: 67 EQQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLA 126 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + +++DP+ RD+AMLE++Y GLR+SELVGL ++ + L G V ++GKG KER +P+G Sbjct: 127 EPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGE 186 Query: 184 NAVAWIEHWLD-LRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A+ +EH+L R + D +F SK + ++ + R + + G+ + PH Sbjct: 187 MAITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPH 246 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ L ++ HPR Sbjct: 247 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG 300 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 350 bits (899), Expect = 3e-95, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 5/298 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + Y RYL E+ L ++ +Y++ L + + + + D + ++ Sbjct: 6 NQFENVLLDYTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENIL-LVKVDRFTILDWLN 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + G S+ +S+LR FF +L +++ +P V+ PK HLP+ + ++ Sbjct: 65 YLQNSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEA 124 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +L + DI+ L +R+RA+LE MY G R+SE+ L + L E G + +GKG K+R +P Sbjct: 125 VLAVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVP 184 Query: 181 IGRNAVAWIEHWL-DLRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 IG ++ +I + + R L E LFL+ G RIS + + K E IK G++ + Sbjct: 185 IGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDI 244 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHSFAT++LE+ DLR VQELLGH+++STTQIYTH+ +H+ Y+ HPRAK Sbjct: 245 SPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 350 bits (899), Expect = 3e-95, Method: Composition-based stats. Identities = 142/299 (47%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D ++ YL L+ R+ S T Y+R L A + L W D +R + Sbjct: 4 DSLEQLDDYLDRLA--RRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYVGT 61 Query: 63 SRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 +G L A SL L+A+R FFD L+ + L NPA+ V P++ R LP+ +DVD + Sbjct: 62 RHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVAG 121 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM-GKGSKERRLP 180 LLD +D L RDRAM E+ Y +GLRLSELVGLD+ +D +G V+V GKG K R +P Sbjct: 122 LLDAPADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARYVP 181 Query: 181 IGRNAVAWIEHWLDLRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +G A+ I WL+ R + G+ ALFLS+ G+RI+ R V+ R W K GL+ VHP Sbjct: 182 VGAKALEAIGAWLEARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHP 241 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 H LRHSFA+HMLE+SGDLR VQELLGHA L+TTQIYTH+DFQ LA+VYD +HPRA+R + Sbjct: 242 HMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARRDR 300 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 171/299 (57%), Gaps = 7/299 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M +L ++ +L +E+ LS T+ +Y+ L A+ ++ +N L S + D ++ F Sbjct: 1 MKNL-ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDL-SLETLDAVDLQGFL 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KG A S A LSA+R F +L + +P+ +S+PK P LPK + ++ Sbjct: 59 GERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVS 118 Query: 121 RLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ + PL +RD+AMLE++Y GLR++ELV L I+++ ++ G V V+GKG+KER + Sbjct: 119 DLLNTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIV 178 Query: 180 PIGRNAVAWIEHW-LDLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A W+ + L R + G D +F S+ ++++ + R + I ++ Sbjct: 179 PMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAD 238 Query: 237 -VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FATH++ DLR VQ LLGH +LSTTQIYTH+ + L +++ HPR Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 167/300 (55%), Gaps = 10/300 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T +++ YL+VER + T+ +Y+R L + ++F E L S D + F Sbjct: 64 TSAAKVARQWITYLTVERGKARNTIASYRRDLASYLDFVGERSLDSIAATD---IEAFLQ 120 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R GL S+ LS +R F + + + + A ++ P P+HLP + VD++N Sbjct: 121 SLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINT 180 Query: 122 LLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDL---ESGEVWVMGKGSKER 177 L++ D +A+R++A+LE++YG G R+SE++ L + + G + + GKG K+R Sbjct: 181 LIESQAGDSAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQR 240 Query: 178 RLPIGRNAVAWIEHWL-DLRDLFGS-EDDALFLSKLGKR-ISARNVQKRFAEWGIKQGLN 234 +P+G +A ++ +L R + ALFL+ G + +S ++ + + + G+ Sbjct: 241 IVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGIT 300 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATH+LE D+R VQELLGHA+++TTQIYTH+ L +++ AHPRA Sbjct: 301 KDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 113/296 (38%), Positives = 177/296 (59%), Gaps = 10/296 (3%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW-----QQCDVTMVRNFAV 61 + + +L + S TL+ Y + L FA+ + Q D+ +VR+F Sbjct: 6 ALSLFDGHLKTQ-NRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLG 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 +GL S+A +LSALR+FF +L + L+ NP + ++ PK R LP + +++++R Sbjct: 65 EMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDR 124 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L+ D L RD+ +LE++YG+GLR+SEL L+ + +D S + V GKG+KER +P Sbjct: 125 LIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVP 184 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 + A+ +L++R+ + +AL L+ G R+S R++++ ++ GL+ H+HPH Sbjct: 185 LTNYALEAARQYLEMRE---DKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L+ DLR VQELLGHA LS+TQIYTHL + L VY+ HPRAK+ Sbjct: 242 MLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 92/299 (30%), Positives = 161/299 (53%), Gaps = 6/299 (2%) Query: 1 MTDLHTDV-ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF 59 MT H ++ + + YLSVE+ LS ++ +Y L NF + + + + + F Sbjct: 1 MTSSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHI-DFLKVQADDIMRF 59 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + + + + ++A + A+R F+ +L + +L NP + + P+ R +P + D++ Sbjct: 60 LNEEKDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEI 119 Query: 120 NRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 L I ++ +RD+ + E++Y +GLR+SE L + +DLE + V GKG ++R Sbjct: 120 EELFASIKEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRL 179 Query: 179 LPIGRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +P G ++ + +L F + LF+SK G I+ ++V + + + + Sbjct: 180 VPFGEKSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSILK 239 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHSFATH+LE+ DL+ VQELLGH +++TTQIYTH+ + L V+ HPR Sbjct: 240 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPRG 298 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 104/293 (35%), Positives = 164/293 (55%), Gaps = 6/293 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNFAVRSRRK 66 + ++ YL +ER LS ++ Y+ + + F Q ++ F Sbjct: 7 IRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITEL 66 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR-LLDI 125 G+ A S A LS ++SFF +L+ + +P+ + +PK R LP + ++ + LL I Sbjct: 67 GMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLAI 126 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D++ P +R+RAMLE +Y GLR+SEL L I +L + G V V+GKG+KER +PIGR+A Sbjct: 127 DLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRDA 186 Query: 186 VAWIEHWL-DLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 +I + ++R D+ ++ +FL++ G ++S V +K GL V PH Sbjct: 187 RKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSPHT 246 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH++E DLR VQE+LGH +++TT+IYTHLD +L + HPR+ Sbjct: 247 FRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 116/295 (39%), Positives = 184/295 (62%), Gaps = 6/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + ++++L Y+ E++LS +T+ NYQ + +I + + + +R + Sbjct: 3 NELLDQFLNYIKFEKRLSELTIKNYQNDINRLIL----INDKKLTEFNSEDIRLSLSKLH 58 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 GL SL+ LS+ RS F + +K +P G+ APK+ + LP+ + +D + L++ Sbjct: 59 ASGLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLIN 118 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 I + + RDRA+LE Y +GLRLSELV + + +D + V+GKG+K R +P+GR Sbjct: 119 IPQTNFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRK 178 Query: 185 AVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A+ ++ W+ R+ +D+ LFL++ GK+++AR +Q R W K + ++HPH L Sbjct: 179 AIEALDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLL 238 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RHSFA+H+L+SS DLR VQELLGH+N+STTQIYTHLDFQHL+ +YD AHPR+K+ Sbjct: 239 RHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSKKK 293 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 114/294 (38%), Positives = 170/294 (57%), Gaps = 3/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R++ YL VER + T Y R L+ ++ F ++ W + F + Sbjct: 1 MQKQINRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTM 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R + + ++ LS++R F +LV+Q L+ N A+G+ +PK + LPK +D + + ++L Sbjct: 61 RHQNISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML 120 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + +RD AM+EV+Y GLR+SELVGLDI+ +D G + VMGKGSK R P+G Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 +A I +L + ALF++ +RIS R VQ + G+ +VHPH LR Sbjct: 181 SAQKSINRYLQ---KTSHTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLR 237 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H+ ATH L+SS DLR VQE LGH ++ +TQ+YTHLDF L+ VYD HPRAK+ Sbjct: 238 HAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRAKKS 291 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 171/299 (57%), Gaps = 18/299 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E YL +L+ + S T+ Y+ L ++++ GL + Q + +R + + R G Sbjct: 35 IEDYLDFLTFTKGRSENTVKAYRNDLHSLVD-----GLTTVDQLTLHHIRRWQADALRAG 89 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--- 124 +SL+ R SA+R+F WL + ++++PA +S+P+ + LP+ + D +L Sbjct: 90 HARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLE 149 Query: 125 --IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + DP+A+RD AM+E MYG G+R+SEL L+I LD V ++GKG+K+R +P G Sbjct: 150 VGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPFG 209 Query: 183 RNAVAWIEHWLDL-RD------LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +A ++ W+D+ R D+A+FL K G RI R V+ + Sbjct: 210 ESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQATSTVS-GG 268 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHS AT +LE DLR VQE+LGHA+L+TTQIYTH+D + L +V++ AHPRA Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 159/293 (54%), Gaps = 5/293 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +E +L YL E ++ T+ Y+ + +++ + D+ + + R+ Sbjct: 24 HLEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRR 83 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 L A +++ L L+ FF +LV + L + A +++PK ++LPK + + +N+LL Sbjct: 84 KLAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAP 143 Query: 127 -INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D +RDRA+L +MY G R++E+V L + + L G +GKG+KER + + A Sbjct: 144 CRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVA 203 Query: 186 VAWIEHWLD-LRDLFGSED---DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 VA +E +L R + + ALFL++ GK++S V + + G + V PH Sbjct: 204 VAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEVSPHT 263 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATHM+ ++R +QELLGHAN+ TTQIYTH+D L +V+ HPR Sbjct: 264 LRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPRG 316 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 170/298 (57%), Gaps = 7/298 (2%) Query: 4 LHTDVER-YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + +ER Y+RYL +E+ SP T+ YQ+ + A F + + + + + +R + Sbjct: 8 MDAVLERDYMRYLQIEKGASPSTISQYQKDICAF--FQNMDHTKPVEDVNHQDIRRYLAL 65 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++ G ++A +L++LRS + +L + ++ NP V+ PK + LP + ++M + Sbjct: 66 LQKDGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAI 125 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 D D + L R+ A++E++Y +G+R SE GL +K +DL+ + VMGKG KER LP+ Sbjct: 126 FDAIDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPV 185 Query: 182 GRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G AV + +LD R ++ D LF++ G ++ R ++K A+ L + + Sbjct: 186 GSFAVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLT 245 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH +RH+FATHML DLR VQELLGH +L TQIYTH+ L VY +HPRAK+ Sbjct: 246 PHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRAKK 303 >UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular organisms RepID=XERC_RALPJ Length = 328 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 138/313 (44%), Positives = 184/313 (58%), Gaps = 20/313 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRS 63 H + YL L ERQLSP TL +Y R+L + +++ Q +R + Sbjct: 16 HPQIAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQL 75 Query: 64 RRKGLGAASLALRLSALRSFFDWL-VSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL S+A LSA R +F W+ + + ANP GV APK+P+ LPK + V+ L Sbjct: 76 HGDGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVAL 135 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL-----------DLESGEVWVM 170 ++ + +D +RDRA+ E+ Y GLRLSELV LD++H+ DLE+ EV V+ Sbjct: 136 MEQLPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVL 195 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED------DALFLSKLGKRISARNVQKRF 224 GKGSK R +P+G A + WL +R D ALFLS GKR++ R +Q R Sbjct: 196 GKGSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRM 255 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 I G+ VHPH LRHSFATHML+SSGDLR VQELLGHA++++TQ+YT LDFQHLA Sbjct: 256 KRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLA 315 Query: 285 SVYDAAHPRAKRG 297 +YD AHPRAK+ Sbjct: 316 KIYDQAHPRAKKK 328 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 167/295 (56%), Gaps = 8/295 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + LHT ++ + +L + S T+ Y+ L +A + ++ + +R + Sbjct: 20 SKLHTLIDDFCEHLDLVVGRSAATIRGYRSDL-----YAMADTIEDIDNFSLPTLRQWLG 74 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +G A+LA R +++++F W LKA+ A + +PK R LPK + Sbjct: 75 IAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGD 134 Query: 122 LLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 ++ N+ +RD A+LE++Y G+R++EL G+D+ +D + V V+GKG+KER + Sbjct: 135 FVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERVV 194 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G +A + +WLD+RD + ALF+ G+RI+AR V++ G++ H+ P Sbjct: 195 PFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD-HLSP 253 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+ ATH+L+ DLR VQELLGH+++ TTQIYTH+ + L ++ AHPRA Sbjct: 254 HSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 155/295 (52%), Gaps = 8/295 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + + +E + YL + S T+ Y+ L + + + + +R + Sbjct: 22 SQMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHMAA-----TIPDLTEFTLPNLRAWLG 76 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R+ +G A+LA R ++++SF W V + + A + +PK R+LP+ + Sbjct: 77 RAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGE 136 Query: 122 LL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + RD A+LE++Y G+R+SEL GLD+ +D V V+GKG KER + Sbjct: 137 FMGSAAADTEDEFRRDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMI 196 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G+ A +E WL+ RD +DA+F+ G RI AR +++ G +H+ P Sbjct: 197 PFGKAAADALEQWLEARDRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQVAG-ADHLSP 255 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+ ATH+L+ DLR VQE+LGH++L TTQIYTH+ Q L + AHPRA Sbjct: 256 HSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 123/312 (39%), Positives = 172/312 (55%), Gaps = 19/312 (6%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQ--SWQQCDVTMVRN 58 T L ++ +L +L ER LSP TL Y+R L ++ + +G+ W + T +R Sbjct: 13 TPLPVEIGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRG 72 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + R+GL S+A +LSA+RSF+ W+ + NPA+ V +PK PR LP +D Sbjct: 73 YMAHLTRRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQ 132 Query: 119 MNRLLDIDIN-----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 L+ + VR+ AMLE+ Y +GLRLSEL G+D+ LDL S +V V GKG Sbjct: 133 AETLMQHAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKG 192 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFGSEDD-----------ALFLSKLGKRISARNVQK 222 KER +P+G +A + ++L RD ++ A+FLS+ G RISAR VQ Sbjct: 193 RKERIVPLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQH 252 Query: 223 RFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH 282 + H LRH+FATH++++ DLR VQELLGHA++STTQIYTH Sbjct: 253 AMVTLMSAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDR 312 Query: 283 LASVYDAAHPRA 294 L VY AHPRA Sbjct: 313 LKKVYRQAHPRA 324 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 158/303 (52%), Gaps = 10/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 V ++ YL +ER LS TL Y+ L + G + + + + F Sbjct: 15 FEDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALR-VEHGDLAAFVGAL 73 Query: 64 RRKG-----LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 G A ++ +++ LRSF+ L + L +P + P + LPK + D+ Sbjct: 74 AAGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDE 133 Query: 119 MNRLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 + LL P A+RDRA+LE+MY GLR SE V + + LD++ G + GKG+KER Sbjct: 134 VQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGNKER 193 Query: 178 RLPIGRNAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +PIG A+ + H+L R E+ +F+++ G ++ + + K GL Sbjct: 194 LVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTAGLG 253 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + + PH LRH+FATH+L DLR +QE+LGHA+++TTQIYTHL + L VY AHPRA Sbjct: 254 DKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRA 313 Query: 295 KRG 297 + G Sbjct: 314 QLG 316 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 166/302 (54%), Gaps = 7/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNF 59 M + + +++Y YL ERQ S +TL Y+ + +NF S+NG + + D VR + Sbjct: 1 MNQITSTMKKYEEYLQAERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIY 60 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + L S+A ++S+LRSF+ +L+ + K NP + + + LP+ + ++ Sbjct: 61 LNNLYERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEV 120 Query: 120 NRLL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L D + +R+ A++E++Y G+R+ E+ L +D S V + GKG K+R Sbjct: 121 IEYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180 Query: 178 RLPIGRNAVAWIEHWLDLRDL----FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 +P G+ A+A ++ +L R+ F + +F++ G++++ + + + L Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKL 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++HPH LRHSFATH+L + D+R VQELLGHA+LSTTQIYTH+ ++L Y R Sbjct: 241 TANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDR 300 Query: 294 AK 295 AK Sbjct: 301 AK 302 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 113/304 (37%), Positives = 162/304 (53%), Gaps = 12/304 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ L ER+L ++++E+ SP T+ Y+R L F ++ F Sbjct: 1 MSSLTYS-ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLS-VQSPVIEQFI 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R +G A S+A +A+R +L+ + NP GV K P +PK + D++ Sbjct: 59 ASLRAEGKAAKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVA 118 Query: 121 RLLDIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 R+L D A+RDRA+LE +Y G R+SE GL + LD+ES V + GKGSKER + Sbjct: 119 RILASVTGVDSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIV 178 Query: 180 PIGRNAVAWIEHWLDL--RDLFGSED-------DALFLSKLGKRISARNVQKRFAEWGIK 230 P G +A A +E WL R + SE DA+FL G R+S + + ++ Sbjct: 179 PFGSHAKAALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQI 238 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 + + V PH LRHS ATHML DLR VQELLGHA++STTQ+YT +D + L +Y + Sbjct: 239 AEVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKES 298 Query: 291 HPRA 294 HPRA Sbjct: 299 HPRA 302 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 159/300 (53%), Gaps = 13/300 (4%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK-- 66 + +L YLSVER SP T+ YQR L+ + + G + Q + F Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFA 77 Query: 67 ---GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 LG+ S+ L+A RS+ +L L AN A V K PR LP+ + +++M LL Sbjct: 78 SFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALL 137 Query: 124 DIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG--EVWVMGKGSKERRL 179 + D ++RDRA+LE +Y +G R+SE + L + +D E+ V + GKG KER Sbjct: 138 AAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERIS 197 Query: 180 PIGRNAVAWIEHWL-DLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +G A ++ +L +R + + +FL+ GK +S + + ++ Sbjct: 198 MLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDR 257 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 VHPH LRH FATH+L+ D+R VQELLGHA+++TT+IYT + Q L VY +AHPRA+ Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 170/293 (58%), Gaps = 11/293 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS-RRKG 67 ER+LR+L +ER LS TL +Y+R + + + G +S + + + +F + +G Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWL---GARSVTELNTGDIESFMASLAKGEG 70 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L A++ A L+A+R+F +L + + + A V+ P +PK + + ++ +L+ Sbjct: 71 LAASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCP 130 Query: 128 NDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 ND A +RDRA+LE++Y G R+SEL+GLD+ +D + V GKGSKER +P+G Sbjct: 131 NDDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGD 190 Query: 184 NAVAWIEHWL-DLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+ ++H+L +R F + ALFL++ G R+ ++ + K G+ V PH Sbjct: 191 PALDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAG-VSPHS 249 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE D+R VQELLGH+N+ TTQIYT + HL + +HPR+ Sbjct: 250 FRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPRS 302 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 155/306 (50%), Gaps = 17/306 (5%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ + YL R LS T Y+ LE + G + + + +R + +S Sbjct: 3 FADTIDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQS 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ +S+A + A+R FF W + ANPA + PK P LP + +L+ Sbjct: 63 SKRH-ARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLM 121 Query: 124 D------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 D + +R+ AMLEV+Y G+R++ELVGLD+ + ++ + V G Sbjct: 122 DCVDEQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTG 181 Query: 172 KGSKERRLPIGRNAVAWIEHWLD---LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWG 228 KG+K+R +P G A I WL+ R + DALFL G RI R V++ E Sbjct: 182 KGNKQRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECA 241 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 + G+ + + PH LRHS ATH+L+ DLR VQELLGH++L TTQ YTH+ + L + Y Sbjct: 242 QRAGVPD-ISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYG 300 Query: 289 AAHPRA 294 A PRA Sbjct: 301 QAFPRA 306 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 8/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS--RRK 66 +++LRYL VER S T Y+ + +F E+G + + VR + R Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALADHRS 67 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-I 125 S++ ++++LRSF+ +L+ + +K NP V K LP+ ++M L D + Sbjct: 68 SYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSV 127 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + PL +R+RA+LEV+YG+G+RLSE L + +D +S + + GKG+KER P+G A Sbjct: 128 AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFA 187 Query: 186 VAWIEHWLDLRDL-----FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + + E D +F++ GK I+ ++ + K L++ +HPH Sbjct: 188 QDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPH 247 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L + DLR VQELLGHANLSTTQIY H+ + L Y + HPRA Sbjct: 248 MLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 139/297 (46%), Positives = 180/297 (60%), Gaps = 7/297 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R++ +L+V SP TL Y+ +E + N + +R + Sbjct: 1 MDEAIRRFIEHLAVA-GRSPHTLAAYRADIELLENMMQAKSARD---ATAAELRKALAKL 56 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +GL + SLA RLS+ R F+ WL E + NPA G+ APK + LPK + VD LL Sbjct: 57 HAQGLSSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALL 116 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D I+ L RDRA+ E++Y GLRLSE V L++ +D + + GKG KER +PIG Sbjct: 117 DRIEGESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIG 176 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A+ + WL R G ++ ALFL + G R+ R V+KR +W IK G HVHPH L Sbjct: 177 AEAMLRLRTWLGERSA-GMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHML 235 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA-KRGK 298 RHSFA+HML+SSGDLR VQELLGHANLS+TQIYT LDFQHLA VYD AHPRA KRGK Sbjct: 236 RHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARKRGK 292 >UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178962A Length = 294 Score = 346 bits (888), Expect = 6e-94, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 172/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++ Y++YL E+ LS T+ +Y+ L+ + FA+E + ++ + T++ + R Sbjct: 1 MKPYLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R++G A+SL ++LRSFF +LV Q + +P + + PK R PK++ V+ +++LL Sbjct: 61 RQQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D P RD+AMLE++Y +G+++SELV L I + LE + G KER LPI Sbjct: 121 SAPDSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPIT 180 Query: 183 RNAVAWIEHW-LDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A + + D+RD + +DALFL+ LG R++ + K ++G G++ + P Sbjct: 181 PIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+L + DLR VQE+LGH+ LSTT +Y + + VYD HPR+ Sbjct: 241 HTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPRS 294 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 112/297 (37%), Positives = 187/297 (62%), Gaps = 5/297 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT++ ++ +L L + S T+ NY+R L + + + + + D + + Sbjct: 1 MTNIE-HIDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLENND---ILMWV 56 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + +G + +L +LS+LRSFF++L++ +K NP G+ APK+ + LPK ++ D++ Sbjct: 57 KKLHAQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELA 116 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLDI ++ + RD A +++Y G+RLSEL +++K +++ + V+GKG+KER + Sbjct: 117 YLLDIKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVY 176 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 G + + WL+ RD + + + LF+S+ G+ ++ R++QKR + K H+HPH Sbjct: 177 FGSKTLINLNRWLNTRDTYSPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYA-TKHIHPH 235 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 LRHSFATH+L+SS DL V++LLGHA++S+TQIYTHL+FQ LASV+D AHPRAK+ Sbjct: 236 MLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 181/305 (59%), Gaps = 13/305 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-----ENGLQSWQQCDVTMVRN 58 ++ ++ +L YL VE+ SP T +YQ+ L +++ + E+ D + R+ Sbjct: 1 MYVHIDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRH 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + +++GL A++A RL+A RSF+ +L + + NP V++PK + LP+ + D+ Sbjct: 61 YLAHMQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDE 120 Query: 119 MNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L++ D PL +RDRA+LE +Y GLR+SELV LD+ LD+ SG + V GK ++ER Sbjct: 121 AKELVEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARER 180 Query: 178 RLPIGRNAVAWIEHWL-DLRDLF------GSEDDALFLSKLGKRISARNVQKRFAEWGIK 230 +P+G AV ++ +L R ++ALFL+ G+R+SAR ++K ++ K Sbjct: 181 LVPLGSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK 240 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 L + PH LRHSFATH+L + DLR VQEL+GH LS+TQ+YTH+ + L VY + Sbjct: 241 VSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKS 300 Query: 291 HPRAK 295 HPRAK Sbjct: 301 HPRAK 305 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 100/322 (31%), Positives = 162/322 (50%), Gaps = 34/322 (10%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE----------------------- 42 ++ +L+YL+ ER+L+ TL YQ L + F + Sbjct: 36 PLLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGA 95 Query: 43 -----NGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANP 97 + Q +R + R++ S + R+SALR+FF +L + L +P Sbjct: 96 GLASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDP 155 Query: 98 AKGVSAPKAPRHLPKNIDVDDMNRLLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGL 155 A + PK R LPK + ++ +LL LA+R+ AML ++Y G+R+SELV L Sbjct: 156 AALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKL 215 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWL---DLRDLFGSEDDALFLSKLG 212 + ++ ++G + ++GKGSKER +P G A + ++ R L D LF++ G Sbjct: 216 PVAAVN-QAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRG 274 Query: 213 KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTT 272 ++ + + ++G+ + PH LRHSFATH+LE DLR VQ +LGHA+++TT Sbjct: 275 TAMTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATT 334 Query: 273 QIYTHLDFQHLASVYDAAHPRA 294 QIYTH+D L +++ HPR Sbjct: 335 QIYTHVDTNRLKAIHRKFHPRG 356 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 183/316 (57%), Gaps = 25/316 (7%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQ-----QCDVTMVRNFA 60 ++R+ +L ER+LS T Y+R LEA F +E + Q D + F Sbjct: 4 PYLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFL 63 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R R+GL ++ R++ALR++F+++ + + NPA VS+PKAP+ LP+ V+ Sbjct: 64 GRGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTL 123 Query: 121 RLLDIDINDPLA----------------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 LLD PL+ +RD A+LE++Y AGLR+SE LD +DL Sbjct: 124 NLLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRG 183 Query: 165 GEVWVM-GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDA---LFLSKLGKRISARNV 220 GE+ V GKG K+R +P+GR AVA IE WL R + D +F +LGKR+++R Sbjct: 184 GELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREG 243 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 Q+ +W + L V PH LRH+FATH+L++ DLR +QE++GHA+LS TQ YTHLD Sbjct: 244 QRLLEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDM 303 Query: 281 QHLASVYDAAHPRAKR 296 Q LA VYDAAHPRA+R Sbjct: 304 QALAKVYDAAHPRAQR 319 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 178/315 (56%), Gaps = 23/315 (7%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ----------------- 46 + +E ++ YL+ ER LS L+ + LE + + Sbjct: 1 MRVAIEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLP 60 Query: 47 --SWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAP 104 + + + ++ +R GL AAS+ L + AL+ FF WL ++ ++ + A+ + P Sbjct: 61 EVAPGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLP 120 Query: 105 KAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLE 163 + R+LP+ ++ ++RLL+ I I+ P +RDRA+LE++Y +GLR+SELV +++LDL+ Sbjct: 121 RTERYLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLD 180 Query: 164 SGEVWVMGKGSKERRLPIGRNAVAWIEHWLD-LRDLFGSED--DALFLSKLGKRISARNV 220 + + V GKG+K R +P+G+ A I +L+ R + +FLS G +++ + Sbjct: 181 ARIIRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRI 240 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 + GL+ +V+PH LRHSFATH+L + DLR +QE+LGHA++STTQIYTH+D Sbjct: 241 WQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQ 300 Query: 281 QHLASVYDAAHPRAK 295 Q L +V+ HPRAK Sbjct: 301 QRLKAVHHRFHPRAK 315 >UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira RepID=XERC_LEPIC Length = 318 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 174/297 (58%), Gaps = 5/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L+ ++++ YL +E+ S T+ Y L+ F + L Q + +R++ Sbjct: 23 LNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQL-DIFQIEPVDIRSYFAYL 81 Query: 64 RRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +K + S + +LS+LR+F+ L+ ++ +K+NPA +S PK + +PKN +++ + Sbjct: 82 AKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEI 141 Query: 123 LDIDINDPLA---VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L+ + + +RDRAM+EV+Y +GLR+ ELV + L + + V+GKG KER + Sbjct: 142 LEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFV 201 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G+ AV+ ++ +L+ R++ + + +FL++ GK+++ R V+ E K G + P Sbjct: 202 YFGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITP 261 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 HK RH+FAT +L++ ++R VQELLGH++LSTTQIY + + + VY AHP A++ Sbjct: 262 HKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK 318 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 35/329 (10%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFA 60 + ++++L ++SVER LSP T+ +Y+ L N+ E + + + + Sbjct: 7 SPFSPKIQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYV 66 Query: 61 VRSRRK-----GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 + LG ++A R++++ + +++S ++ ++P+ V APK HLP + Sbjct: 67 RAMSSQAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLS 126 Query: 116 VDDMNRLLDID----INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + ++ R++D D +++RDRA++E +Y G R+SE VGL + +DL V + G Sbjct: 127 ISEVERVIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSG 186 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLFGS------------------------EDDAL 206 KG K+R +PIG+ AV + +L + R + S + Sbjct: 187 KGQKQRLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVI 246 Query: 207 FLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGH 266 FL+K GK +S ++ + + G + +HPH LRHSFATH++ D+R VQELLGH Sbjct: 247 FLNKRGKSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGH 306 Query: 267 ANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 A+++TTQIYTH+ L Y +HPRA+ Sbjct: 307 ASVTTTQIYTHISPDALMEAYVMSHPRAR 335 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 166/297 (55%), Gaps = 5/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + + Y +YL VE+ LS T+ +Y R L A NF E + + + + + Sbjct: 3 IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 62 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + S++ +L +LR + +LV +N +K N + PK + LP + ++M + Sbjct: 63 LSKTNC-TNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEI 121 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD I + D ++ R+R M+E++Y G+R+SEL+ L +K L+++ G + V+GKG+KER +PI Sbjct: 122 LDGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPI 181 Query: 182 GRNAVAWIEHWL-DLRDLFGSEDDAL-FLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G +E ++ D R F ++D+L F +K G+R+S + V P Sbjct: 182 GSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSP 241 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 H RH+FATH+LE+ DLR +QELLGH+++STT IYTH+ Q + S Y HPR K+ Sbjct: 242 HTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 298 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 107/292 (36%), Positives = 163/292 (55%), Gaps = 8/292 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + +YL+ ER S TL Y+R + F + L ++ +R F K Sbjct: 27 IDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKRL-NFSHAGKRDIREFLEELGNKK 85 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGV-SAPKAPRHLPKNIDVDDMNRLLDID 126 L A+LA +L+ L SF+ +L+ +K N + + ++ K + +P + ++M LL++ Sbjct: 86 LSRATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLLNLP 145 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 P RDRAM+E+ Y GLR+ ELV LD+K++D S V V GK +KER +P+G + Sbjct: 146 DLKP---RDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVGDICL 202 Query: 187 AWIEHWLDLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 I+ +++ R G D +FLS KR+ R ++ + +K G V PH LR Sbjct: 203 HAIKDYINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLR 262 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H+FATH+L+ DLR VQE+LGH NLS+TQIYTH+ + L VY HPRAK Sbjct: 263 HTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRAK 314 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 6/298 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+D +ER+L L +E L+ TL+ Y+R L+A+ +F + L + + V + Sbjct: 1 MSDYR-LMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNL-TLPEIQRQDVLEYI 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +K L +++A +LSA+R F LV + +P GV PK R LP + + Sbjct: 59 GELAQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETE 118 Query: 121 RLL-DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL D + L +RD AMLE+MY GLR+SELV L + LD E+G V V+GKG+KER + Sbjct: 119 ALLYAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIV 178 Query: 180 PIGRNAVAWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A + + L G + LFLS G ++ N + + + Sbjct: 179 PMGEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKP 238 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH +RH+FATH+L DLR VQ +LGHA++STT+IYTH+ L ++D HPR Sbjct: 239 LSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPRG 296 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 153/286 (53%), Gaps = 1/286 (0%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 Y Y+ +E++LS T+ +Y R L +F ++ + M+ + +G Sbjct: 13 RSYRVYIKLEKRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGR 72 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DI 127 S A LS +RSF+++L+ + + + P + + PK RHLP + V++++R++ D Sbjct: 73 EKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDT 132 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + RD AMLEV+Y GLR+SEL L + L G + V GKG K+R +P+ A Sbjct: 133 STVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAARE 192 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 I+ +LD R S D +FL+ G +++ V E + G++ H+ PH RHSFA Sbjct: 193 KIQRYLDDRATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFA 252 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 TH+LE +R VQE+LGH ++ TT+IYTHL+ HL + P Sbjct: 253 THLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLPL 298 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 165/295 (55%), Gaps = 6/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW-QQCDVTMVRNFAVRS 63 ++ + YL +ER LS ++ Y R +E ++ + +Q Q ++ +++ Sbjct: 21 DAYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWI 80 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 G+ A S A +S +++F+ +L ++ ++ +P + APK R LP + +++ +++ Sbjct: 81 ATLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQII 140 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 I P R+RA+LE MY GLR+SE+ L I L ++G + V+GKG KER +PIG Sbjct: 141 GQIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIG 200 Query: 183 RNAVAWIEHWL-DLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +AV +I + ++R + ++D LFL++ G ++ + E G++ V Sbjct: 201 SDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVS 260 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH RHSFATH++E DLR VQE+LGH +++TT+IYTHLD ++L HPR Sbjct: 261 PHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 182/299 (60%), Gaps = 8/299 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----WQQCDVTMVRNF 59 + YL + E S T+ Y+R LE + ++ ++ Q Sbjct: 35 FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAA 93 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 R ++GL A +LA +LS+ R + WLV + + A+P G+S PK P+ +PK + + + Sbjct: 94 LRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWL 153 Query: 120 NRLLDIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 NR+LD+ ++ DPLAVRD A+ E+MYG+GLR+SE+ GL+ + L+ V V GKG K+R Sbjct: 154 NRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 213 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 ++P+ + ++++L LR S+ ALF + G R+S R +QKR A+W G HV Sbjct: 214 QVPLTGKSAEALKNYLPLRQT-ASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 272 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH +RHS+A H+L++S D+R VQELLGH++LSTTQIYT LDF H+A +YD AHPRAKR Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331 >UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IL8_THICR Length = 317 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 136/321 (42%), Positives = 197/321 (61%), Gaps = 29/321 (9%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINF---------ASENGL------ 45 M+D R+++ L +E S T+ NYQR L ++ F E L Sbjct: 1 MSDYQ----RFIKQLKLE-NKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAW 55 Query: 46 ------QSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAK 99 WQ + +++ F ++G+ A S+A +LSA+R+F+ +L+ Q NPAK Sbjct: 56 AFLDQFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAK 115 Query: 100 GVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKH 159 G+ APK P+ LPK++DVD +LL+ + VRD+A+ E++Y GLR+SELV LD+ Sbjct: 116 GLKAPKQPKALPKSLDVDLTRQLLEQPLKTWQDVRDQAIFEILYSGGLRVSELVELDLSP 175 Query: 160 -LD-LESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRIS 216 LD L SG V V+GKG KER P+G+ A + WL++R + + A+F+++ GKR+ Sbjct: 176 GLDGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLG 235 Query: 217 ARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT 276 R++Q + + ++ GL + PH+LRH+ ATH+LESSGDLR VQE+LGHANLSTTQIYT Sbjct: 236 VRSIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYT 295 Query: 277 HLDFQHLASVYDAAHPRAKRG 297 LD QHLA+VYD AHPRAK+ Sbjct: 296 KLDLQHLATVYDKAHPRAKKK 316 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 342 bits (878), Expect = 9e-93, Method: Composition-based stats. Identities = 103/294 (35%), Positives = 151/294 (51%), Gaps = 6/294 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 T +E + L +E LS TL Y+R L + + S D M+ + R Sbjct: 50 RTSIELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAA-R 108 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +S RLS R ++ W + ++ +P + + K P P + + LL Sbjct: 109 SDGKATSS-NRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLA 167 Query: 125 ID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + L +RDR MLE+MY +GLR+SELV L + L G V VMGKGSKER +P G Sbjct: 168 APEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGE 227 Query: 184 NAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A WIE +L + R DALF++ G+ ++ + ++ + H+ PH Sbjct: 228 VAHGWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPH 287 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH+++STTQIYTH+ + L +++ A HPR Sbjct: 288 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG 341 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 158/301 (52%), Gaps = 12/301 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 + D + + + + + R LS T Y R L + L W D V Sbjct: 17 VDDEPAYITEFRQAM-LARGLSTRTRNAYVRDL-KLCETTHSKALTLWSDMD---VMQCL 71 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+G + A LS+LR F+ W+V + NP + + PK R LPK++ +D+ Sbjct: 72 TALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVE 131 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL D + L +RD+AMLEV+Y GLR+SEL+ L ++ ++L +G + + GKG+K R + Sbjct: 132 SLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLV 191 Query: 180 PIGRNAVAWIEHWLDLRD------LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+G A ++ +L L A+FL+ G ++ +N ++ + G+ Sbjct: 192 PLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGI 251 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + + PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ L +++A HPR Sbjct: 252 QSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPR 311 Query: 294 A 294 Sbjct: 312 G 312 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 105/306 (34%), Positives = 161/306 (52%), Gaps = 17/306 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA--SENGLQSWQQCDVTMVRNFAVRSRR 65 +E +L +++V++ S T Y L + F E L Q ++ F R Sbjct: 67 IEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLFR 126 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 KG +S+A +L+A RSFF + + ++ N A V P+ + P+ ++VD+ LLD Sbjct: 127 KGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLDS 186 Query: 126 DI--------------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + + RD A+ E++YG+GLR+SE + LD+ + L S + VMG Sbjct: 187 ATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVMG 246 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIK 230 KGS+ER P+ + + ++ WL+ R L D+A LF+ G R++ R + + Sbjct: 247 KGSRERLAPLSDTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCRR 306 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 GL V PH LRHSFATH+LE+ D+R VQELLGH L+TTQ YT + + L YD A Sbjct: 307 AGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQA 366 Query: 291 HPRAKR 296 HPR+ + Sbjct: 367 HPRSGK 372 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 151/297 (50%), Gaps = 8/297 (2%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSR 64 + + +YL+VERQ S T+ Y ++A F ++ G + D V + Sbjct: 2 ELISLFKQYLTVERQYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYLF 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + L S++ ++SALRSF+ +LV + + NP + V K LP +MN L + Sbjct: 62 DRHLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFE 121 Query: 125 I--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 +R+ A+LEV+YG G+R+SE L +D + V+GKG+KER +P G Sbjct: 122 AVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPFG 181 Query: 183 RNAVAWIEHWLDLR-----DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 R A ++++ + + +F++ K I+ ++ + LN + Sbjct: 182 RYAKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKI 241 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HPH LRHSFAT +L + DLR VQELLGH++LSTTQIYTH+ + L Y PR+ Sbjct: 242 HPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRS 298 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 164/298 (55%), Gaps = 8/298 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L D+E ++ YL + LS TL Y+ L+ + ++ L+S + + Sbjct: 3 TKLTQDIELFIDYLWTQVGLSDATLSAYRGDLQQVQKILADVPLKS---ATIEQMMQVLA 59 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +G S+A S+L FF + + Q E NP + K RHLP+ + D+ Sbjct: 60 QFHDRGYSHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEA 119 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL D+ L +RDRAMLE++Y GLR+SELVGL + + L+ G V ++GKG KER +P Sbjct: 120 LLSAPDVQTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVP 179 Query: 181 IGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN-H 236 G A W++ ++ + R + D +F+S+ G +S + R + GL++ Sbjct: 180 FGEIAHEWLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNK 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FA+H+L DLR +Q LLGH++LSTTQIYTH+ Q L S++ HPRA Sbjct: 240 ISPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 165/296 (55%), Gaps = 3/296 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M + + +++ L + S TL Y L+ + N+ +E+ L + + T +R + Sbjct: 1 MESNASLINKFILSLQS-KNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + ++ ++S +RSF +L+ +K NP K + PK + LPK + ++ + Sbjct: 60 GVTSEGDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETD 119 Query: 121 RLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RL+D N L RD+A+ E++Y +GLR SE+ GL IK +DL G V VMGKGSKER + Sbjct: 120 RLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 PI A+ ++ +L R ++ S D LFL++LG R++ + IK L V Sbjct: 180 PITDLAIEALKEYLSTRGVYNSG-DPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTA 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRHSFATHML + DLR +QE+LGH +LS TQ+YTH+ L +Y HPR+K Sbjct: 239 HSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRSK 294 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 157/291 (53%), Gaps = 9/291 (3%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 + YL E L+ T+ Y+R L + +++ + V + ++ ++ L Sbjct: 4 AFTDYLQSECHLAANTVAAYRRDLVRFERWLGAREIRTLR---VGELSDYVAWLYKEELA 60 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID-IN 128 AS+A + +L+ FF +L + L+ N + + + K R +P I ++ LL Sbjct: 61 PASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWSE 120 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 DP RDRA+LEV+Y G R SE+ GL + + L+ G V GKGSK+R P+ + + Sbjct: 121 DPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSARV 180 Query: 189 IEHWL-DLRDLFGSED----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 ++ +L + R ++ LFLS+ GKR+S + + ++ + G++ V PH LR Sbjct: 181 VKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDVSPHSLR 240 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFATH+L DLR VQE++GHA+++TTQIYTH+D L V+ HPRA Sbjct: 241 HSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 36/326 (11%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN------GLQSWQQCDVTMVRN 58 H+ + +L+YL+ ER +S T+ Y++ L + F + S + + +R Sbjct: 11 HSQLTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRL 70 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 F G + S+ +L++++SFF +LV N L A+PA V+ PKA + LP ++ Sbjct: 71 FLGELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQ 130 Query: 119 MNRLLDIDINDPLAV-----------------------RDRAMLEVMYGAGLRLSELVGL 155 L D ++ RDRA+LE+ Y GLRL+EL+GL Sbjct: 131 TQTLFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGL 190 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-------EDDALFL 208 +I LD ++G V V+GKG K+R +P+G +A ++++L+++ F E +A+F+ Sbjct: 191 NIMELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFV 250 Query: 209 SKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHAN 268 ++ GKR+ VQ+ ++ PH LRH+FATH+L + DLR V E+LGH+N Sbjct: 251 TEKGKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSN 310 Query: 269 LSTTQIYTHLDFQHLASVYDAAHPRA 294 LSTT+IYTH+ F+ L VY AHP+A Sbjct: 311 LSTTEIYTHISFERLKQVYQQAHPKA 336 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 164/302 (54%), Gaps = 11/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 ++ + V ++LR L E+ S T+ Y LE F G W D +R F Sbjct: 3 VSQVEKGVAQFLRSLK-EKNSSVHTIKAYTTDLEEFSAFL---GPAKWDDIDHVRIRGFL 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KGL S+A L+ALRS + WL + ++ NPA V+ PK P+ LP+ ++++N Sbjct: 59 SHLYDKGLSKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELN 118 Query: 121 RLLDIDINDPLAV--RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 ++D ++ + + RD + E++YG G+R SEL G+++ + + + + GKG KER Sbjct: 119 TVMDAEMPEAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERF 178 Query: 179 LPIGRNAVAWIEHWLDLRD----LFGSEDDALFLSKLG-KRISARNVQKRFAEWGIKQGL 233 +P G A + +L R +AL ++ +R+++R+V + + + +GL Sbjct: 179 VPFGDAAAVAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGL 238 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 VHPH LRH+F TH+LE DLR +QELLGH L+TTQ YT L +H+ VYD HPR Sbjct: 239 PADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPR 298 Query: 294 AK 295 AK Sbjct: 299 AK 300 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 105/290 (36%), Positives = 159/290 (54%), Gaps = 3/290 (1%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 E +L L VER S TL +YQ L F + LQ + + RN+ L Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ-LKTFEYRDARNYLSYLYSNHL 64 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DI 127 S++ ++S LR+F+++ ++ +E NP + PK ++LP+ ++M L + Sbjct: 65 KRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEE 124 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + +RDR +LE++Y G+R+SELV + + +D + V V+GKGSKER +P G Sbjct: 125 DTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQ 184 Query: 188 WIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 IE++L+ + + D L L+ G+ I+ R V+ + + + +HPHKLRH+F Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTF 244 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 ATH+L DLR VQ LLGH NLSTT YTH+ Q L VY AHPRAK+ Sbjct: 245 ATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKK 294 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 162/303 (53%), Gaps = 15/303 (4%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS---WQQCDVTMVRNFAVRSRRK 66 R++ +L ER LS T+ Y L+ + + Q D +R + K Sbjct: 24 RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALH-K 82 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 S A +LS LRSF+ +L + ++ NPA V+ PK +P + VDD+ LLD Sbjct: 83 TRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSL 142 Query: 126 ------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 R+ A+ E MY G+R+SEL G+D +D G V V+GKGSKER + Sbjct: 143 NAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIV 202 Query: 180 PIGRNAVAWIEHWLDLRDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 P+G A+ ++ +L + D E ALF + G+R++ R+V + + GL Sbjct: 203 PVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQ 262 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H+ PH LRH+FATH+L S DLR +QE+LGH+NLSTTQ YTH+ L VYDAAHPR++ Sbjct: 263 HLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRSR 322 Query: 296 RGK 298 R + Sbjct: 323 RDR 325 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 171/304 (56%), Gaps = 10/304 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQSWQQCDVTMVRNFA 60 + ++R++ ++ +ER LS T+ Y L+ + +E ++ + ++ Sbjct: 16 EEFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYI 75 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 GLG ++A RL+++ + ++++ +++A+ + V APK +LP + ++++N Sbjct: 76 RTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVN 135 Query: 121 RLLDIDIN----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 R+++ N D +++RD A+LE +Y G R+SE VG+ + +DL V + GKGSK+ Sbjct: 136 RVIEAAGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQ 195 Query: 177 RRLPIGRNAVAWIEHWLDL-RDLFGSEDDA----LFLSKLGKRISARNVQKRFAEWGIKQ 231 R +PIG AV + ++++ R + +FL+K G +S ++ + + G + Sbjct: 196 RLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERA 255 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 L+ +HPH LRHS ATH++ D+R VQELLGHA+++TTQIYTH+ L Y +H Sbjct: 256 KLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSH 315 Query: 292 PRAK 295 PRAK Sbjct: 316 PRAK 319 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 162/309 (52%), Gaps = 19/309 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQS-WQQCDVTMVRNFAVR 62 ++ +L +L+ +R S T NY++ L + E G++ W+ R + Sbjct: 29 EKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRF 88 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R L A++ LR ALR+F+ +L+ + A+P K VS PK + LPK + M L Sbjct: 89 LGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVEL 148 Query: 123 LDIDIN---------------DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 L + + RD A+LE +Y GLR+SEL GL + +D V Sbjct: 149 LGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLV 208 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSK--LGKRISARNVQKRFA 225 V GKG KER++PIG A+ I ++ + +FL + +S R +Q+R Sbjct: 209 RVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLK 268 Query: 226 EWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLAS 285 ++ GL+ + PHKLRHS+ATHML++ DLR VQELLGHA+L TTQ+YTH+ + L Sbjct: 269 KYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKR 328 Query: 286 VYDAAHPRA 294 YD+AHPRA Sbjct: 329 AYDSAHPRA 337 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 153/293 (52%), Gaps = 10/293 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 ++ YL E L+ ++ YQR + + + + V + ++ R + L Sbjct: 25 RSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIPKL---TVRDLTDYLAFMREENL 81 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID-I 127 S+A + L+ F +L + +K NPA+ + K +P + RLLD Sbjct: 82 DPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLDAPQP 141 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 DPL RDRA+LE++Y G R SE+ ++++ L +E GKGSKER +P+G A+A Sbjct: 142 YDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLGDPALA 201 Query: 188 WIEHWLD-LRDLFGSED-----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 +E +L+ R ++ L LS G+R++ + + + ++ ++ G + PH Sbjct: 202 AVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPASMSPHT 261 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATH+L DLR VQELLGHA++ TTQIYTH+D L ++ HPRA Sbjct: 262 LRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 160/301 (53%), Gaps = 6/301 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNF 59 M ++ + +L ER S TL Y R + + ++A + + ++ + Sbjct: 1 MMTWTEKIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEY 60 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + ++ S A +S++++FF +L + NP + +PK +LP + +D+ Sbjct: 61 LFQLSKQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDV 120 Query: 120 NRLL-DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 R++ I+I+ L R++ M+EV+YG GLR+SEL+ L I +++ + + V GKG K R Sbjct: 121 ERIIKAINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRF 180 Query: 179 LPIGRNAVAWIEHWL-DLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P+ I+ ++ ++R + +D LFL+ G +S V E K G+N Sbjct: 181 VPLATYTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH RHSFATH+L++ DLR +QE+LGH++++TT+IYTHL + L V HPR Sbjct: 241 KKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPRN 300 Query: 295 K 295 K Sbjct: 301 K 301 >UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desulfovibrio RepID=Q311L4_DESDG Length = 332 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 166/315 (52%), Gaps = 19/315 (6%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG--LQSWQQCDVTMVRNFA 60 L E Y+ YL++E+ S T+ Y L +F L + + +F Sbjct: 14 PLPDTAEMYMGYLALEKGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFL 73 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+ +G +S+ +LSALR FF +L + +++ P +G++ P+ + P+ ++VD Sbjct: 74 ADLHRQHVGKSSMGRKLSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAY 133 Query: 121 RLLDIDINDPLAV--------------RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 +LD RD A+ E++YG+GLR+SE + LD+ H D SG Sbjct: 134 AVLDTRTQAASRAQVHVRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGL 193 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKR 223 + V GKGSKER +P+ + ++ WLD+R+ G + A+FL G R++ R + Sbjct: 194 IKVTGKGSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRI 253 Query: 224 FAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 283 + GL V PH LRHSFATH+LE+ D+R VQELLGH L+TTQ YTHL + + Sbjct: 254 IEDLCRAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKI 313 Query: 284 ASVYDAAHPRAKRGK 298 VYD AHP +K GK Sbjct: 314 VEVYDRAHPGSKAGK 328 >UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales RepID=A6TR58_ALKMQ Length = 294 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 174/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + ++ YL E+ LS TL +Y+R ++ ++ + + + ++ T + + Sbjct: 1 MDILINNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +++G A++++ L++LRSF+ +L+ ++ +P + +PK + P + ++++ LL Sbjct: 61 QKEGRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLL 120 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 +N P +RD+AMLE++Y G+R++EL+ L+++ +++ G + +KER +PIG Sbjct: 121 QQPLNTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCC-NNTKERVIPIG 179 Query: 183 RNAVAWIEHWLDL-RDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 ++ ++ +++ RD F +++ +LFL+ G R++ + K + + + + P Sbjct: 180 TLSLIALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH++E+ DL+ VQE+LGH+++STTQ+Y L + VY+ HPRA Sbjct: 240 HTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 339 bits (870), Expect = 8e-92, Method: Composition-based stats. Identities = 130/305 (42%), Positives = 179/305 (58%), Gaps = 11/305 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA---SENGLQSWQQCDVT-----M 55 L + + YL YLS R LS T +Y+R L A++ ENG +T Sbjct: 13 LPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHD 72 Query: 56 VRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 +R+F R GL SLA LSA R F+ +L+ + NP V PK+P LP + Sbjct: 73 IRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALS 132 Query: 116 VDDMNRLL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 D+ +LL + ND LA RD A+ E+ Y +GLRL+EL L +D G V V GKG Sbjct: 133 PDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKG 192 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +K R +P+G A+ ++ WL LR + + ALFLS+ G+RI R + R + Q Sbjct: 193 NKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTIAYRLHQRAQLQN 252 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L++ VHPH LRHSFA+H+L+SSGDLR VQE+LGH+++ +TQ+YTHLDFQHLA +YD AHP Sbjct: 253 LDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHP 312 Query: 293 RAKRG 297 RA++ Sbjct: 313 RARKK 317 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 339 bits (870), Expect = 8e-92, Method: Composition-based stats. Identities = 121/302 (40%), Positives = 180/302 (59%), Gaps = 8/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----WQQCDVTMV 56 + + YL + E S T+ Y+R LE + ++ + Q Sbjct: 3 LDGFAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDF 61 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R ++GL A +LA +LS+ R + WLV + L +P + PK P +PK + Sbjct: 62 TAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQ 121 Query: 117 DDMNRLLDIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 + +NR+LD+ ++ DPLAVRD A+ E+MYG+GLR+SE+ GL+ + L+ V V GKG Sbjct: 122 EWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGR 181 Query: 175 KERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 K+R++P+ +V ++++L LR S+ ALF + G R+S R +QKR A+W + G Sbjct: 182 KQRQVPLTGKSVEALKNYLPLRQT-ASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDG 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HV PH +RHS+A H+L++S D+R VQELLGH++LSTTQIYT LDF H+A +YD AHPRA Sbjct: 241 RHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 300 Query: 295 KR 296 KR Sbjct: 301 KR 302 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 339 bits (870), Expect = 8e-92, Method: Composition-based stats. Identities = 111/290 (38%), Positives = 169/290 (58%), Gaps = 10/290 (3%) Query: 16 SVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG-LGAASLA 74 + + S T+ YQR L NF L + + + +R + K L ++SL Sbjct: 22 RIIQNQSEHTIEAYQRDLTDFFNFCDSKSL-ALYDIEASDLREYLANRVEKDQLSSSSLQ 80 Query: 75 LRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDP---- 130 L+++R F W L+ NP++ + PR LP +D++ ++++LD D Sbjct: 81 RHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAPPDKPIEQ 140 Query: 131 -LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 L +RD+A+LE++Y +GLRL+EL GL IK +D + + GKG+K R +P G+ A + Sbjct: 141 QLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFGQKAKDSL 200 Query: 190 EHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 WL + ++ E D A+F+S+ G R++ R ++ R + G+N +HPH LRH F Sbjct: 201 IEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDLHPHLLRHCF 260 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 A+HML +SGDLR VQE+LGH+NLSTTQIYTH+DF LA VYD HPRA++ Sbjct: 261 ASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRAQK 310 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 175/294 (59%), Gaps = 12/294 (4%) Query: 14 YLSVER--QLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG-LGA 70 +L + S T+ Y+R +++ + F + + + + +R + + + L + Sbjct: 15 WLKERKIQNQSEHTITAYERDVKSFLEFCELKKV-DLRNVEASDLREYLAQRVEQDQLSS 73 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI--- 127 +S+ L+++R F W L+ NP + PR LP ID++ +N++LD + Sbjct: 74 SSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEK 133 Query: 128 --NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + L +RD+AMLE++Y +GLRL+EL GL IK +D V + GKG+K R +P G+ A Sbjct: 134 PVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKA 193 Query: 186 VAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + +WL + +++ ++ ++F+S+ G ++ R ++KR + G+N +HPH L Sbjct: 194 KESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLL 253 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RH FA+HML SSGDLR VQE+LGH+NLSTTQIYTH+DF HLA VYD AHPRA + Sbjct: 254 RHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 115/291 (39%), Positives = 173/291 (59%), Gaps = 7/291 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNFAVRSRRKG 67 E++L YL ER SP T+L YQ+ L A F ENG W Q + + + + +K Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQK- 63 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-DID 126 L +++L+ +LS+L+SF+ +L + +KA+P + + + LP+ D++ +++ ++ Sbjct: 64 LASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLN 123 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 PL VR+RA++ + Y G+RLSEL L IK LDLE+G + V GKG+K+R + + + Sbjct: 124 DGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESK 183 Query: 187 AWIEHWLDL-RDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 ++E +L R + A+FL+KLG+ IS+R + K + K GL HPH+L Sbjct: 184 KYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHEL 243 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 RHSFAT ML + DLR VQELLGH +LSTTQIYTH+ QHL Y PR Sbjct: 244 RHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 108/295 (36%), Positives = 173/295 (58%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNFAVR 62 L +E++L + V S T+ Y++ + I++ S N + + + +V VR+F Sbjct: 10 LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAY 69 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 S +G S+ ++SALR+FF +L QN ++AN V+ PK + LP + DD+N+L Sbjct: 70 SNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKL 129 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 + IDI+ +RDR ++E +Y +GLR SELV L ++LE EV V+GKG+KER Sbjct: 130 RNVIDISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFF 189 Query: 182 GRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 NA W E ++ + + +F++ G+RI+ R++++ A++ K G+N V P Sbjct: 190 SENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTP 249 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H RHSFAT +L + D+R +QELLGH+++STTQ+YTH+ L +Y AHP A Sbjct: 250 HVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLA 304 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 157/296 (53%), Gaps = 10/296 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS---WQQCDVTMVRNFAVRSRR 65 + +L YL +ERQ S T Y+ + + F S VR F Sbjct: 11 QLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSELYE 70 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 KG G+ ++A ++S+LRSF+ +L++ + NP G+ K +HLP+ ++ ++ D+ Sbjct: 71 KGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKMFDV 130 Query: 126 DIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + D L +R+ +LE++YG G R+SE+ + ++++D + V + GKG+K R +P GR Sbjct: 131 VMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVPFGR 190 Query: 184 NAVAWIEHWLDL-RDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A + +L R + S+ + LFL++ G ++ ++ + G K GL V Sbjct: 191 YAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQEVT 250 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H RH+FAT +L + DLR VQ+LLGH++LSTTQIYTH+ L Y PRA Sbjct: 251 AHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRA 306 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 155/301 (51%), Gaps = 12/301 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +E ++++L + LSP T Y+ L+A + + +N +R++ + Sbjct: 43 QQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLD-ISHKQLRSYLAQLY 101 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + ++ LSA+R+++ WLV + K + A +++PK P+ LP + + +LL Sbjct: 102 AARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLA 161 Query: 125 IDINDPL-AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D + +RDRA+LE++Y G R+SE L + + +S +V + GKGSKER +PI Sbjct: 162 TCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYP 221 Query: 184 NAVAWIEHWLD-LRDLFGSE---------DDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 + +L R + S+ + +F+S GK +S + ++ F + L Sbjct: 222 ECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHL 281 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH +RHSFAT +L DLR VQELLGHA+L+TTQIYTH+ L A+PR Sbjct: 282 QEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPR 341 Query: 294 A 294 A Sbjct: 342 A 342 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 18/308 (5%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG--LQSWQQCDVTMVRNFAVRSR 64 ++E +L +L V+R LSP T + Y L + F ++ G L + ++ + R Sbjct: 21 EIESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLY 80 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +++A +L+A R+FF + + N A V PK + P+ ++VD +LD Sbjct: 81 ALGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLD 140 Query: 125 ID--------------INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 D LA RD A+ E++YG+GLR+SE +GLD+ L L+ V V Sbjct: 141 TPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVF 200 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGI 229 GKG++ER P+ +V + WL+ R E + ALF+ G R+ R +R Sbjct: 201 GKGARERMSPLSDTSVTALRAWLEQRGTLAPEGEKALFVGARGGRLDRREAMRRIERLCR 260 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 G+ V PH LRHSFATH+L++ DLR VQELLGH L+TTQ YT + + L +YD Sbjct: 261 NAGVE-PVSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDE 319 Query: 290 AHPRAKRG 297 AHPRA++ Sbjct: 320 AHPRAQKK 327 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 166/294 (56%), Gaps = 5/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +E+Y + ++ LS T+ Y+R ++ F E G + ++ DV + ++ Sbjct: 1 MDNLIEQYFAEIR-KKNLSLNTIDAYRRDIKKFHEFLDEKG-EKLREVDVITIMSYVQYL 58 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ G +S+ + ++R+FF +L + + NP PK R+ P + ++++ +LL Sbjct: 59 QKNGRANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLL 118 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D N +RD+AMLE+MY G++++EL+ L I ++L+ + G +KER +P+G Sbjct: 119 MGPDGNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMG 178 Query: 183 RNAVAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 AV +E +L +R ++ D LF + G +++ + K ++ + G+ ++ + Sbjct: 179 SYAVKCLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYT 238 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ-HLASVYDAAHPRA 294 LRHSFA H+L++ D++ +QELLGH++++TTQIY+ + + +A VY HPRA Sbjct: 239 LRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 153/296 (51%), Gaps = 2/296 (0%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D ++ +L Y+ + R S T Y+R +E I + + + +W++ D + + Sbjct: 2 DYKKSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTT 61 Query: 63 SRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R+K L +S LS+LRSFF +L + NP K R LP+ + VD + Sbjct: 62 LRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQD 121 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD D+ D +R+R ++E++Y GLR+SE + I+ + V VMGK SKER +P Sbjct: 122 LLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVP 181 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 + + +L F D F GK IS R++Q + G + L +HPH Sbjct: 182 FYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L++ DLR VQ LLGH NLSTTQIYTH+ L V HP + + Sbjct: 242 VLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLSHK 297 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 336 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 9/300 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + + ++ + +YL++ER S T Y L ++ F +E + ++R + Sbjct: 1 MESVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSA 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 G +LA R SA+++F W V + + ++PA + PKA R LP + D Sbjct: 61 QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120 Query: 123 LDIDIN-----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 LD + DPLA+RDR ++E++Y G+R+SEL GLDI +D + V+GKG K+R Sbjct: 121 LDAANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQR 180 Query: 178 RLPIGRNAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P G A + WL R + + AL L G+R+ R + E Sbjct: 181 TVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGA 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+LE DLR VQELLGH+ L+TTQ+YTH+ L +V+D AHPRA Sbjct: 241 PDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 114/279 (40%), Positives = 164/279 (58%), Gaps = 2/279 (0%) Query: 20 QLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSA 79 + SP T+ +Y + LEA + + G+ VR A KG +S+A RLS Sbjct: 19 RFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHASDLLAKGAAKSSVARRLSC 78 Query: 80 LRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAM 138 LR+F + + ++ AK V PK R LP+ + +++ L+D + +D +A+RDRA+ Sbjct: 79 LRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDHVGGDDFVALRDRAL 138 Query: 139 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 198 LE +Y G+R+SE V LDI LDL +G V+GKG +ER + +GR AV + +L LRD Sbjct: 139 LEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVMVGRRAVDALRRYLPLRDR 198 Query: 199 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLR 258 A+F+++ G R++ R+V++ + +H H LRHSFATHML DLR Sbjct: 199 MAR-CSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHGLRHSFATHMLNGGADLR 257 Query: 259 GVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 VQELLGHA+LS+TQIYTH + LA Y AAHPRA+RG Sbjct: 258 SVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRARRG 296 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 110/300 (36%), Positives = 161/300 (53%), Gaps = 9/300 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL-QSWQQCDVTMVRNFAVR 62 + T +E + RYL +ER S T Y L ++ F E + M+R++ Sbjct: 1 MDTVLEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAA 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 G ++LA R S++++F W V + + +PA + PKA R LP + D Sbjct: 61 HAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120 Query: 123 LDIDIN-----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L+ + DPLAVRDR ++E++Y G+R+SEL GLD+ +D + V+GKG+K+R Sbjct: 121 LEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQR 180 Query: 178 RLPIGRNAVAWIEHWL-DLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P G A A + WL + R + D AL L GKR+ R + + G Sbjct: 181 TVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGA 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+LE DLR VQELLGH++L+TTQ+YTH+ L +V+D AHPRA Sbjct: 241 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 110/318 (34%), Positives = 163/318 (51%), Gaps = 24/318 (7%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M T E YL Y+ +ER S TL +Y L ++F + + +V + Sbjct: 1 MDTFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYI 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +G+ ++++ +S+++ F ++V + + +P + PK HLP + D + Sbjct: 61 AHLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQII 120 Query: 121 RLLDIDINDPLA-------------------VRDRAMLEVMYGAGLRLSELVGLDIKHLD 161 LLD L RD+A+LE++YG GLR+SEL GL+ + Sbjct: 121 HLLDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVL 180 Query: 162 LESGEVWVMGKGSKERRLPIGRNAVAWIEHWL-DLRDLFG---SEDDALFLSKLGKRISA 217 + V V GKGSKER +P A+ +++ R L DA+FLS G RIS Sbjct: 181 VSDELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISR 240 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 + V +G G+ +HPH LRHS+ATHMLE +LR VQELLGHA++STTQ+YTH Sbjct: 241 QAVFSLVERYGSYVGI-KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTH 299 Query: 278 LDFQHLASVYDAAHPRAK 295 +D H+ S Y AAHPRA+ Sbjct: 300 IDLTHIRSEYMAAHPRAQ 317 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 13/299 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 + +L YL VE+ LS +++ Y + ++ F ++ +S VR+F Sbjct: 11 LRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRK-RSLDAAKRQDVRDFLDSLFSNQ 69 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN------- 120 L ++A +LS+ R F+ +L+ ++ +P + +P+ + LPK++ D++ Sbjct: 70 LDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQGPP 129 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 R+LD + LA+RDRAMLEV Y LR+SE++G+ ++ L+ G + V GKG KER +P Sbjct: 130 RVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERIVP 189 Query: 181 IGRNAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 +G++A+ ++ +L+ R++ G LF+ K +++S + V + + G H Sbjct: 190 LGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASG--RHA 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHS ATHM+E+ DLR VQ +LGHA++STTQIYTHL L V+ HPR+KR Sbjct: 248 SPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKR 306 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 336 bits (862), Expect = 6e-91, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 165/308 (53%), Gaps = 12/308 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + YL Y+ + + T+ +Y L + + ++ + D + V++F Sbjct: 2 KLTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEY 61 Query: 63 SRR-----------KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 R+ K +AS+ +++L F +L NP + + KA +HLP Sbjct: 62 LRQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLP 121 Query: 112 KNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 ++ D+ RLLD + + D+A++E++YG GLR+SE L ++ + LE G + V+G Sbjct: 122 VYFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIG 181 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIK 230 KG+KER +P+ +E++L +R + + +F++ G+ I+ + + + + Sbjct: 182 KGNKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLA 241 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 GL+ + H RHSFA+H+L+ DLR VQELLGH+++STTQIYTH+ + L SVY + Sbjct: 242 LGLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSF 301 Query: 291 HPRAKRGK 298 HPRAK+ K Sbjct: 302 HPRAKKHK 309 >UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD80_THET1 Length = 310 Score = 335 bits (861), Expect = 8e-91, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 166/284 (58%), Gaps = 11/284 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNF 59 M D + VE ++ +L ER S T Y+ + ++ ++ + SW + ++++ Sbjct: 1 MFDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDY 60 Query: 60 AVRSR---RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 + + + ++ A +++A++SFF +LV+++ + NPA + +P+ ++ PK I V Sbjct: 61 LLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISV 120 Query: 117 DDMNRLLDI--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 ++N LL D P +RDRAMLEV+Y GLR+SELV L++ ++L+ + +G+G Sbjct: 121 QEVNMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRG- 179 Query: 175 KERRLPIGRNAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 K R++P+ + AV ++ +L+ R L G ++ ALF++ G+R++ + + + Sbjct: 180 KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEA 239 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIY 275 G+ + PH LRHSFA HM++ DLR VQE LGHA+++TTQ+Y Sbjct: 240 GI-KGITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 335 bits (861), Expect = 8e-91, Method: Composition-based stats. Identities = 114/296 (38%), Positives = 170/296 (57%), Gaps = 11/296 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFAVRSRRK 66 + + YL+ ER+ S T+ NY++ E + G+ + + + +R+F + ++R+ Sbjct: 30 QPFENYLAHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIEAQRR 89 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 G +L +S LRSFF + + + +++ NP GV PK + LPK + + M RLL Sbjct: 90 -FGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGP 148 Query: 127 --------INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 I+ A RDR +LE++YGAGLR+SEL GL+ +DLE+G ++GKG KER Sbjct: 149 QQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERL 208 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 PIGR AVA + + D + D + +++ G R+S R VQ + L + Sbjct: 209 CPIGRVAVAVLRKFRDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAELPMDLT 268 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PHKLRHS+ATH+L + DLR VQELLGHA L+TTQ+YTH+ L +Y AHPRA Sbjct: 269 PHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 335 bits (861), Expect = 8e-91, Method: Composition-based stats. Identities = 104/289 (35%), Positives = 161/289 (55%), Gaps = 6/289 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 V ++R++++ S T + Y+R + ++F + + D M ++ Sbjct: 4 EELVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAVH---EVDRLMAYDYLNMLY 60 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 L ++S+A ++S LRSF+ +L L NP + + + RHLP + D++ LL Sbjct: 61 DSNLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLL 120 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 L VR++ M+E+MY GLR+SE+V L I LDL + V+GKG+KER+L + Sbjct: 121 SCDESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYES 180 Query: 185 AVAWIEHWLDL-RDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 V + +L+L R F S+ +A+FL++ GK ++ R +Q G GL +HPH Sbjct: 181 LVPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHM 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 LRHSFATH+L++ LR VQ LLGH +LSTTQIYTH+ Q + VYD A Sbjct: 241 LRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 15/306 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T VE +L+YL ER S T Y L +N+A L W++ ++ + F + Sbjct: 1 MQTLVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFE 60 Query: 64 RRK-----------GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 R + L + S+ L ++ALR+F+ + ++ L N A+ +S P+ + LPK Sbjct: 61 RERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPK 120 Query: 113 NIDVDDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + ++ +LL ++ P + D+A+LE+ Y +GLRL+EL + ++ L LE G + V+G Sbjct: 121 ALSDLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIG 180 Query: 172 KGSKERRLPIGRNAVAWIEHWLDL-RDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWG 228 KG+KER +P+G AV ++ +L+ R + +FL+ G +A + KR + Sbjct: 181 KGNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRV 240 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 + G+ +V PH LRHSFATH+LE DLR +QELLGHAN+STT+IYTH+ L V+ Sbjct: 241 KRSGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHR 300 Query: 289 AAHPRA 294 HPR Sbjct: 301 KFHPRG 306 >UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax=Bifidobacteriaceae RepID=D2RA91_GARVA Length = 322 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 18/303 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ Y+ Y+ + L T Y + + + + +G + + +R++ R Sbjct: 22 IDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRSH 81 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--- 124 +SLA ++ A+R FF W + NPA+ + K LP +D L++ Sbjct: 82 -ARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMNNVD 140 Query: 125 ---------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 + +R+ A+LE++Y G+R+ EL L+I+ ++ S + V GKG+K Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 176 ERRLPIGRNAVAWIEHWL--DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQ 231 +R +P G A + W+ D R++ ++A+FL GKRI R V++ + Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 + + PH LRHS ATHML DLR VQELLGH++L+TTQ YTH+ + L Y A Sbjct: 261 HVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAF 319 Query: 292 PRA 294 PRA Sbjct: 320 PRA 322 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 30/317 (9%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS------WQQCDVTMVRNFAV 61 +E +L +L R +SP T+ Y+ L +F E ++ +V VR F Sbjct: 20 LEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMG 79 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 KG+ S+A +L++++SF+ +L+ + ++P V P+ + +P+ + ++ + Sbjct: 80 HLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQ 139 Query: 122 LL-----------------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 L ++ RDRA+LEV+YG GLRLSEL+ L+ +DL Sbjct: 140 LFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVH 199 Query: 165 GEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF-------GSEDDALFLSKLGKRISA 217 G + V GKG K+R +P+G AV + + ++R F E +F++ G+++ Sbjct: 200 GFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLYP 259 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 VQ+ + + +PH LRHSFATHML DL+ V E+LGH++L+TT++YTH Sbjct: 260 MLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTH 319 Query: 278 LDFQHLASVYDAAHPRA 294 + F L +YD AHP A Sbjct: 320 VTFSRLKEIYDKAHPGA 336 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 335 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQ--CDVTMVRNF 59 ++L + YL L+ S ++ Y+ L + F S L D+ ++R + Sbjct: 7 SELERQIVLYLEDLARAGN-SEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLILREW 65 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 R L A +L +L+A+R F +L+ + + N A V PKAP+ LP+ + D + Sbjct: 66 LAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQV 125 Query: 120 NRLLD----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 N L+D +++ P RDRA+ E++YG G+R+SEL GL+++ +D G + V GKG K Sbjct: 126 NSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRGKGKK 185 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 ER++P+ A +E +L R E A+F++ R++ R + + + Sbjct: 186 ERQVPLPGQAAQSLERYLAERP-VAREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDP 244 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH RH++ATH+L DLR +QELLGHA LSTTQ YT + L +VYD AHP+A Sbjct: 245 GIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHPKA 303 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 147/294 (50%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++ + L +E L+ +L Y+R L + ++ V + Sbjct: 17 QAQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARH 76 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +S RL+ L+ F+ + QN + +P + + K P +PK + + LL Sbjct: 77 EVTKATSS-NRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA 135 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D+ PL +RDR MLE+MY +GLR++ELV L + + G + + GKG K R +P G Sbjct: 136 APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGE 195 Query: 184 NAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A WIE +L + R L G DDALF++ G ++ + + +N + PH Sbjct: 196 EARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPH 255 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH+++STTQIYTH+ + L ++ HPR Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 163/305 (53%), Gaps = 17/305 (5%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + +L +L +ER L+ ++ Y+R L F G +S + D + +F + Sbjct: 7 NFDVATSSFLNHLQIERGLAANSIAAYRRDLVKFSIFL---GSKSLSEVDSNAINDFEIS 63 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R L AS+ S LRSFF L + A+P ++ K+ R LPK + + + + Sbjct: 64 LREAKLSVASINRVDSTLRSFFKHLQQE-YGYADPTLEIAPQKSARRLPKALTISQIVSM 122 Query: 123 LDIDIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKH---LDLESG---EVWVMGKGS 174 +D+ + P+ RD+AMLE++Y +G R+SEL+G+++ +D G + + GKG+ Sbjct: 123 IDVAYREGQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGA 182 Query: 175 KERRLPIGRNAVAWIEHWL-DLRDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGI 229 KER +P+G A +E++L +R S+ ALFL+ G RIS ++ + + Sbjct: 183 KERIVPLGSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAAD 242 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 G+ HV PH RHS+ATH+L D+R VQELLGHA+++TTQIYT + + Y Sbjct: 243 AAGITEHVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYAL 302 Query: 290 AHPRA 294 HPRA Sbjct: 303 THPRA 307 >UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobacteria RepID=A2U0K2_9FLAO Length = 315 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 163/293 (55%), Gaps = 2/293 (0%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVRSRRK 66 ++ +L YLS E+ S T++ YQ+ L + +F N + + + + +R++ V + Sbjct: 23 IKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVEE 82 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 + ++ ++S+L+SF+ +L ++K+NP + A K + + ++ +L+ + Sbjct: 83 EISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLESN 142 Query: 127 I-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 N +++R++ M+E+ Y G+R +EL+ + +K ++ S + V+GK +KER +PI + Sbjct: 143 TENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNSV 202 Query: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 + + +L R + + LF+++ G +I V + + K PH LRHS Sbjct: 203 LKTLNLYLGHRKNISNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSKVKKSPHMLRHS 262 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 FATH+L DL V+ELLGH++L++TQ+YTH + VY+ AHP++K+ + Sbjct: 263 FATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHPKSKKNE 315 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 21/316 (6%) Query: 1 MTD--LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRN 58 MT L T ++ YL YL +ER ++ TL +Y+R L S+ G++ + V Sbjct: 1 MTTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSE 60 Query: 59 FAVRSRRKG-------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 F V RR L A S A L A+R + V++ + + A+ V P R LP Sbjct: 61 FLVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLP 120 Query: 112 KNIDVDDMNRLLDIDIND-----PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 K++ VD++ LL+ + PL +R+RA+LE++Y G R+SE VGLD+ +D ++ Sbjct: 121 KSLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQART 180 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWL-------DLRDLFGSEDDALFLSKLGKRISARN 219 V + GKG K+R +P+GR AV ++ +L R A+FL+ G R+S ++ Sbjct: 181 VLLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQS 240 Query: 220 VQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLD 279 + + G+ + V PH LRHSFATH+LE D+R VQEL+GHA+++TTQIYT + Sbjct: 241 AWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVT 300 Query: 280 FQHLASVYDAAHPRAK 295 Q L V+ AHPRAK Sbjct: 301 VQALREVWAGAHPRAK 316 >UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019772C5 Length = 334 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 155/331 (46%), Gaps = 45/331 (13%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D+ +L YL R LS T+ Y + ++ + G+ +Q +R + R Sbjct: 6 DLSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRD 65 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 +S+A ++ ++RSFF W ++A+PA + PK P LP + RL+D Sbjct: 66 H-ARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRV 124 Query: 127 INDP-----------------------------------LAVRDRAMLEVMYGAGLRLSE 151 +D +A+RD AMLE++Y G+R++E Sbjct: 125 DDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAE 184 Query: 152 LVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLFGS-------ED 203 LVGLDI +D + V GKGSK+R +P G A + W + R L + Sbjct: 185 LVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDT 244 Query: 204 DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263 ALFL G+RI R V+ + G+ + PH LRHS ATHML+ DLR VQE+ Sbjct: 245 AALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQEM 303 Query: 264 LGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LGH++L TTQ YTH+ + L Y A PRA Sbjct: 304 LGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 160/288 (55%), Gaps = 5/288 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 +Y +YL +E+ LS T+ Y L+ ++ + + + + + + +F+ G+ Sbjct: 13 KYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENI-NILDVRLENLEDFSAGLHDIGIH 71 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-DIDIN 128 S A LS +RSF+ +L+ ++ LKA+P + + +P+ LP+ + V++++ L+ ID + Sbjct: 72 PRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSIDRS 131 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 R+RA+LE +Y GLR+SEL L + L E G + V GKGSK+R +PI A+ Sbjct: 132 TKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPRAIKE 191 Query: 189 IEHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 I + R+L + +D +F+S GK IS V E + GL + PH RHS Sbjct: 192 IRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLKKKISPHTFRHS 251 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 FATH+LE +LR +Q +LGH ++ TT+IYTH+D L S HPR Sbjct: 252 FATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPR 299 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 5/300 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ ++ +L +L VER LSP+T+ +YQ L I + ENG+ + + F Sbjct: 1 MSLNSNRLDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGI-DLKDLQPEKLDEFL 59 Query: 61 -VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + + ++ S+A S+LR F ++ Q E + ++ PK +LP+ + +++ Sbjct: 60 TLTAGQEEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEI 119 Query: 120 NRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + + N +RD A++E+MY GLR+SE +G+ + +DLE+ + +GKG+K+R + Sbjct: 120 DSVFESAANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLV 179 Query: 180 PIGRNAVAWIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 P+G A + W++ R L D + L+ GK +S K L+ V Sbjct: 180 PLGSKAKENLRAWIEEGRPLTHPTTDNIILNAHGKPMSRMGAWKIVQ--LHTMHLSKQVS 237 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 PH RHSFATH LE+ DLR +QELLGHA++STTQIYTH+D + + + HPR GK Sbjct: 238 PHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPREMGGK 297 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 9/299 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L VE + +LS R+ SP T+ Y+ L ++ A +G + + + VR + + Sbjct: 18 LTVPVEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADT 76 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R G AA++ R SA R FF W ++ + A+P +++ K P+ LP + VD +L Sbjct: 77 RVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHIL 136 Query: 124 DIDI------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 D + P RD A+LEV+YG GLR+ EL GLD+ +D V V GKG KER Sbjct: 137 DEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKER 196 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +P+G A+ I+ WL R+ + ALFL G+RI R V++ + + Sbjct: 197 TVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSP 256 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+ ATH+LE DLR VQ++LGH +L+TTQIYTH+ + L + + AHPRA Sbjct: 257 DLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriaceae RepID=C8WGZ0_EGGLE Length = 323 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 149/302 (49%), Gaps = 14/302 (4%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 ++ + + VER S TL Y+ L +A + +R + R Sbjct: 23 ELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERI-DILAATHRQLRRYLGELDR 81 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 ++ RLSALRSFF WL +PA + PK P+ LP I DM +LL + Sbjct: 82 AQYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTV 141 Query: 126 DINDPLA----------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 A R+ A+LE +Y G R+SE GL ++D SG+V V GKGSK Sbjct: 142 YGKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSK 201 Query: 176 ERRLPIGRNAVAWIEHWLD-LRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQG 232 ER +P+ AV+ + + R L + D F+S G R+ ++K F + + G Sbjct: 202 ERIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAG 261 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L+ + PH +RH+FAT +L+ DLR VQE+LGHA+LSTTQIYTHL L V+ HP Sbjct: 262 LDESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHP 321 Query: 293 RA 294 R Sbjct: 322 RG 323 >UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1F3_9PROT Length = 298 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 129/295 (43%), Positives = 172/295 (58%), Gaps = 5/295 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D T V YL+ L+ R SP T+ Y+R L A GL QQ V+++ V Sbjct: 5 DFRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIGL---QQITRLQVQDWLVV 61 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 KGL AA+LA RLSAL D V AN A GV PK LP+ + + L Sbjct: 62 GHAKGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAAL 121 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + RD A+L VMYGAGLR+SE VGLD+ +DL S E+ V+GKGSK+R +P+ Sbjct: 122 MQ-PTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLP 180 Query: 183 RNAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + WLD R L ++ A+FL++ G+R++AR+VQ+ ++ G + V PH+ Sbjct: 181 TTAADLLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHR 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L DLR +QELLGHA+L+TT+ YTHLD L VYD +HPRA R Sbjct: 241 LRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRAGR 295 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 159/302 (52%), Gaps = 9/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M D +E + YL+++ S T Y L +++ FA E G + ++R++ Sbjct: 1 MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERG-TGLDGLSLPLLRSWL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM- 119 + G+ +LA R SA+++F W V + L A+PA + PK R LP + D Sbjct: 60 SAAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQAL 119 Query: 120 ----NRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 DP+A+RDR ++E++Y G+R+SEL GLDI +D V V+GKG+K Sbjct: 120 GAMAAAKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNK 179 Query: 176 ERRLPIGRNAVAWIEHWL-DLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQG 232 +R +P G A + WL D R + + AL L G+R+ R + + Sbjct: 180 QRSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVS 239 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + PH LRHS ATH+LE DLR VQELLGH++L+TTQ+YTH+ L +V+D AHP Sbjct: 240 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 Query: 293 RA 294 RA Sbjct: 300 RA 301 >UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NTN2_9MICC Length = 422 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++R+ R+L E+ S T+ +Y LE + + G++ D +++R + Sbjct: 120 FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSL 179 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +++ R S LR+FF W + + ANP +G+ PK HLP + + MN+LL Sbjct: 180 HLRQAARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLL 239 Query: 124 -------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 D D +R A++EV+Y +G+R+SEL GLD++ +D + V V+GKG+KE Sbjct: 240 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 299 Query: 177 RRLPIGRNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQ 231 R +P+G A+ + W+ R + E ALF+ G R +AR +++ Sbjct: 300 RVVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTV 359 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 H LRHS ATH+++ D+R VQELLGH++L+TTQIYTH+ + LA Y AH Sbjct: 360 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAH 419 Query: 292 PRA 294 PRA Sbjct: 420 PRA 422 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 13/298 (4%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQC----DVTMVRNFAVRSR 64 ER+ YL + R++SP T+ Y L +++ F S + + +Q VR++ R+ Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTL 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +++A +A+R+F W + + L ++PA +S+P+A + LP +D D LL+ Sbjct: 67 ADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLN 126 Query: 125 IDINDPLA-----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 ++ A +R+ A+LE+ Y GLR+SE+ LDI L+ ++ V V+GKG+KER + Sbjct: 127 TARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNKERVV 186 Query: 180 PIGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P G A ++HWL R E +ALFL G RI R V+ + + G+++ Sbjct: 187 PYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVHD- 245 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+L+ DLR VQE+LGH++LSTTQ YTH+D L+++Y AHPRA Sbjct: 246 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >UniRef50_A6LE90 Tyrosine type site-specific recombinase n=8 Tax=Bacteroidales RepID=A6LE90_PARD8 Length = 302 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 161/294 (54%), Gaps = 6/294 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRNFAVRSRR 65 ++ +L YL ER S T+ Y + L+ + E+ G+ + + D VR++ V Sbjct: 3 IDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLMD 62 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 + L S+ +LS+L+SFF +L+ + + ANP + VS PK + LP I ++ LLD Sbjct: 63 EKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLDG 122 Query: 126 DI--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D D VR+R ++E++Y G+R SEL+G+ +D E+ +V V GK +K+R +P Sbjct: 123 DGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFAE 182 Query: 184 NAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + + ++RD + + F+ K G ++S V + + + PH L Sbjct: 183 GLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVL 242 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFAT ML + +L V++LLGH++L++T +YTH F+ L VY AHPRAK+ Sbjct: 243 RHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVYH-AHPRAKK 295 >UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella RepID=C5VK74_9BACT Length = 294 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 4/293 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSR 64 VE++L Y+ ER SP+T++NY++ L F E Q SW+ D +VRN+ Sbjct: 2 PMVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMM 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +G A+S+ RLSALRSF+ + + + ++ +P G+ PK + LP+ + +M RLLD Sbjct: 62 DRGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLD 121 Query: 125 ID--INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + V +R ++ Y G+RLSEL+GLD K +D + E+ V GK +K+R +P G Sbjct: 122 SKMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFG 181 Query: 183 RNAVAWIEHWLDLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + + ++R+ + A F ++ GKR++ V+ + K PH Sbjct: 182 KELADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHV 241 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FAT ML L V++LLGH +LSTT+IYTH F+ L VY AHPRA Sbjct: 242 LRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 89/287 (31%), Positives = 158/287 (55%), Gaps = 6/287 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 YL Y +VE+ LS TL +Y+R + ++F S N +S + + F + +G + Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNK-KSILKATRKDIEKFLSERKEQGSKS 60 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIND 129 ++A ++ + + +LV +N + NP + + R LP+++ +++ LL + + Sbjct: 61 RTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKT 120 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 +RD+A+ E+MY +GLR+SE+ L I + E + + GKG +ER +PI A+ + Sbjct: 121 DKGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDIL 180 Query: 190 EHWLDLRDL---FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 + ++ + G + LFL+ G +IS + K E K + +++PH LRHSF Sbjct: 181 QRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIYPHTLRHSF 240 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ATH+++ DLR VQ +LGH++++TT+IYTH+D HL HP+ Sbjct: 241 ATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPK 286 >UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alphaproteobacteria RepID=Q2RV24_RHORT Length = 330 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 152/303 (50%), Gaps = 10/303 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-----SENGLQSWQQCDVTMV 56 +DL + +L +L ER+ S TL Y R L A + F E GL + Sbjct: 29 SDLRPSLVAWLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADF 88 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R + +GL S+A LS LR+ F WL + L+ + +P+ P+ +PK + Sbjct: 89 RAYMAARLTQGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSE 148 Query: 117 DDMNRLL----DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGK 172 + L D+ + LA RD A+ ++YG GLRL E + LD L + + GK Sbjct: 149 SEALDALSVASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDL-PSGEVMRITGK 207 Query: 173 GSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 G KER +P+ V + +L G DD LFL GKR++ VQ++ G Sbjct: 208 GRKERLVPLLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLG 267 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L PH LRHSFATH+L GDLR +QELLGHA+LSTTQ YT +D L ++ A HP Sbjct: 268 LPETATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHP 327 Query: 293 RAK 295 RA+ Sbjct: 328 RAR 330 >UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510416 Length = 319 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 163/316 (51%), Gaps = 24/316 (7%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ---------SWQQCD 52 T + V Y +L R +S T Y + + + D Sbjct: 5 TTIAEVVSGYADHLRS-RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDID 63 Query: 53 VTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 + +R++ + G +++A +++A++SFF + V+Q+ L NPA + PK LP Sbjct: 64 LNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPT 123 Query: 113 NIDVDDMNRLL--------DIDINDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKHL 160 + L+ + D +DP+ VRD A+LE++Y +R+SEL GL+ + Sbjct: 124 VLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDV 183 Query: 161 DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED--DALFLSKLGKRISAR 218 D + + V+GKG+KERR+P G+ A ++ WL LRD F SE DALFL G RI AR Sbjct: 184 DHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGAR 243 Query: 219 NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHL 278 V++ +G + PH LRHS ATHML+ DLR +QELLGH+ +S+TQIYTH+ Sbjct: 244 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHV 303 Query: 279 DFQHLASVYDAAHPRA 294 Q L Y AHPRA Sbjct: 304 SMQRLQETYRQAHPRA 319 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 90/295 (30%), Positives = 152/295 (51%), Gaps = 8/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L + + ++ +L VER ++ ++ +Y+R + + F + + + + + Sbjct: 23 LKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFCPK----EIGNYETDDITKYLLSL 78 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + GL S+A + AL FF +L + V K LP + V++M +LL Sbjct: 79 QEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLL 138 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + + PL +R++ M+E++Y G+R+SEL+ + + L+L + V GKGSK+R +P Sbjct: 139 NSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRYVPYV 198 Query: 183 RNAVAWIEHWLD-LRD--LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +L R L + + LFL+ G+R+S K + ++ + V P Sbjct: 199 DTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANIKKEVTP 258 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H RHSFATH+LE +LR VQ LLGH+++ TTQIYTH+D + L Y HPRA Sbjct: 259 HTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 174/294 (59%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +E+ L +L++ER + T L Y++ LE +++ + L S + + F R Sbjct: 11 QKTIEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKL-SIGSVRSSHIELFLDEER 69 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 ++GL +S+ + + ALR F++L QN++K NP P LP+ + ++ +LL Sbjct: 70 KRGLSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQ 129 Query: 125 ID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + PL RD+A+LE++Y +GLR+SEL+ L ++ E ++ V+GKG+KER +PIG+ Sbjct: 130 APFPDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGK 189 Query: 184 NAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A ++ ++ + L +FL++ G+ ++ +++ + G++ V+PH Sbjct: 190 CAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGIDKKVYPH 249 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FA+H++E+ DLR +QELLGHAN++TTQIYTH++ +HL ++ HPR+ Sbjct: 250 LLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1G4_9MICC Length = 358 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++R+ R+L E+ S T+ +Y LE + + G++ D + +R + Sbjct: 56 FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSL 115 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +++A R S LR+FF W + + ANP +G+ PK HLP + + MN+LL Sbjct: 116 HLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLL 175 Query: 124 -------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 D D +R A++EV+Y +G+R+SEL GLD++ +D + V V+GKG+KE Sbjct: 176 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 235 Query: 177 RRLPIGRNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQ 231 R +P+G A+ + W+ R + E ALF+ G R +AR +++ Sbjct: 236 RVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTV 295 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 H LRHS ATH+++ D+R VQELLGH++L+TTQIYTH+ + LA Y AH Sbjct: 296 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAH 355 Query: 292 PRA 294 PRA Sbjct: 356 PRA 358 >UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAZ0_SORC5 Length = 358 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 125/343 (36%), Positives = 176/343 (51%), Gaps = 49/343 (14%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL---------------- 45 T L + R+L YL+ ER+ S T+ Y+R LE + FA E Sbjct: 13 TTLEQAIARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHRPARARGKAPA 72 Query: 46 ----------------------QSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSF 83 + DV ++R++ R AS+A ++ A R+ Sbjct: 73 TGKTPATGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSLARTH-APASIARKVGAARAL 131 Query: 84 FDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID-INDPLAVRDRAMLEVM 142 +L + E+ N A ++ PK R LP +DVD +++I +RDRAMLE + Sbjct: 132 LRYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGLRDRAMLETL 191 Query: 143 YGAGLRLSELVGLDIKHLDL---ESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF 199 YGAGLR+SEL GLD+ H+D + V V+GKG KER +P+G +A+A IE +L+ RD Sbjct: 192 YGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIERYLERRDEL 251 Query: 200 GSED------DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLES 253 ALFLS+ G RI R VQ +G +HPH LRH+ ATH+L+ Sbjct: 252 ADPTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAGRADLHPHALRHTCATHLLDG 311 Query: 254 SGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 DLR +Q+LLGHA+L+TTQ YTH+ HL VYDAAHP A++ Sbjct: 312 GADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMARK 354 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 162/291 (55%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 + ++ YLS+ER LS T+ Y L + + + + + + N+ + + Sbjct: 2 LAQFKLYLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRE 61 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 L ++++ RL L+ FF +L + + + + + + + R LP + + ++ RLL I D Sbjct: 62 LNDSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYD 121 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 PL R++ ++E++Y GLR+SEL GL + ESG + V GKGSKER +P G Sbjct: 122 EAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVA 181 Query: 187 AWIEHWLD-LRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + ++ +R +++ L +S G+ ++ V + E IK +N ++HPH LR Sbjct: 182 SMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLR 241 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFA+H+L ++ DLR +QELLGHA+++TT+IYTH++ L +++ PRA Sbjct: 242 HSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID=B2GFZ3_KOCRD Length = 378 Score = 329 bits (844), Expect = 8e-89, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + + +LS+ER S T+ +Y + + + E+G+ D +R + + Sbjct: 74 PLAPYLPEFRAHLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQ 133 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++GL +S++ ++A+ +FF W V L+ +PA G+ P+ RHLP + + + Sbjct: 134 RHQRGLARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEM 193 Query: 123 LDI-----------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 LD + + LA RD A+LE++Y G R+SELVGLD H+D + + G Sbjct: 194 LDALGDVALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITG 253 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGI 229 KG K+RR+P G A + W R +E DA+F+ G RI R ++ A+ Sbjct: 254 KGDKQRRVPYGERAGDALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALN 313 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + PH LRHS ATH+L+ DLR VQELLGHA ++TTQIYTH+ + + Y Sbjct: 314 DVPDTSARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQ 373 Query: 290 AHPRA 294 AHPRA Sbjct: 374 AHPRA 378 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 329 bits (844), Expect = 8e-89, Method: Composition-based stats. Identities = 90/293 (30%), Positives = 157/293 (53%), Gaps = 8/293 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V + ++ E L+ ++ Y + +E I F L+ +C + + R+ G Sbjct: 7 VSNFTNWMQYEMGLAENSVKAYHQDIENYIAF----TLKPLVECGAQELVAYMTHLRKSG 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 ++ R+S + F+D+L+ + + +NP VS P LP ++ D++ +L++ D Sbjct: 63 ASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPD 122 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 ++ L RDR + E MY G+R+SELVGL + +D+ + V GKGSK+R +P+ + Sbjct: 123 MSSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLA 182 Query: 187 AWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 ++ +LD+R + ++ LFLS+ GK++ V ++ + G+ +V PH LR Sbjct: 183 EKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKNVSPHTLR 242 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 HSFATH+L + DLR +Q LLGH +LSTT+ YT + + HPR ++ Sbjct: 243 HSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPRFRK 295 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 329 bits (844), Expect = 8e-89, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 157/295 (53%), Gaps = 10/295 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L +E +L YLS+ER SP T Y+R L ++F +E G + +V V F Sbjct: 9 PLDPRMESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERG-RDPVPPEVDTVSLFLAS 67 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R +G +S+ + ++SF +L E+ +P K P P +P + ++ RL Sbjct: 68 LRSQGAAKSSVQRAAACIKSFSRFL---GEVGEDPGKVPMLPDKPSPMPAILTEGEVLRL 124 Query: 123 LDIDINDPLA-VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ D +RDRAM+E++YG GLR SEL L +K LDL SG V V GKG K R LP+ Sbjct: 125 LEATAGDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPL 184 Query: 182 GRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL-NNHVHPH 240 + +E +L +R G+ +F G + K G + + + +HPH Sbjct: 185 VGETRSALERYLKVR---GTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 LRHS ATH+L DLR +Q LLGH+++ TT++YTH D + L VYD +HPRA+ Sbjct: 242 ILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRAQ 295 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 160/308 (51%), Gaps = 20/308 (6%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----------WQQCDVTM 55 + +L YL+ ER+ S T+ NY++ E + +GL+ + Sbjct: 23 EWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRD 82 Query: 56 VRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 +R+F + +R+ +L +S LRSF+ + + + NP G++ PK + LPK + Sbjct: 83 LRDFVIEGQRR-FDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLT 141 Query: 116 VDDMNRLLD---------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 M LL DI A RDR +E++YG GLR+SEL LD +D SG Sbjct: 142 EQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSELTALDYGQIDFTSGV 201 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAE 226 V+GKG KER P+G+ A+A + W + S + ++ +R+ R VQ Sbjct: 202 ARVLGKGRKERLCPLGKVALAVLVKWKNEYARDTSPAAPVLVTPEHERMPVRQVQLMLKR 261 Query: 227 WGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASV 286 + GL + PHKLRHS+ATH+L + DLR VQELLGHA+L+TTQIYTH+ L + Sbjct: 262 YLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDI 321 Query: 287 YDAAHPRA 294 YD AHPRA Sbjct: 322 YDKAHPRA 329 >UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7U3_9BACT Length = 319 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 108/286 (37%), Positives = 148/286 (51%), Gaps = 3/286 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL T + RY+ ++S+ + SP T LNY+ LE FA + G VR F Sbjct: 25 DLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFIRG 84 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL A S++ +LSALR F +L Q+ + ++P + PK P HLP+ + D +NRL Sbjct: 85 LSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVNRL 144 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + A R+R +LE+ Y AGLR++ELV L LD + VMGKGSKER +P G Sbjct: 145 ISAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVPYG 204 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + A + + W SE +F K GK ++ R V + G PH L Sbjct: 205 QWAASALAEWKAQCP--PSEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPG-ASPHTL 261 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 RH FATHMLE ++ VQELLGH +L TTQ Y + + L YD Sbjct: 262 RHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYD 307 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 165/277 (59%), Gaps = 5/277 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +VE+++ YL +++S T+L+Y+R L ++ ++ G+ + T + ++ + Sbjct: 1 MFDEVEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+G AA+++ L+++++FF + ++ +K NPA+ + APK + P + V+++ RLL Sbjct: 61 EREGKAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLL 120 Query: 124 DID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + P +RD+AMLE++Y G+R+SEL+ L++ H+++ G + G +ER +P G Sbjct: 121 NQPGGRTPKEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSG-RERTIPFG 179 Query: 183 RNAVAWIEHWLD-LRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 R A ++ +L R E D LF++ G ++S + K +G K G+ + P Sbjct: 180 RVAKKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT 276 H LRHSFA H++ S D++ VQ++LGH++++TTQ+Y Sbjct: 240 HTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Proteobacteria RepID=Q1LSD3_RALME Length = 369 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 130/313 (41%), Positives = 183/313 (58%), Gaps = 20/313 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFAVRS 63 V RYL +L+ R+L+ TL +Y L + + A + + +R+FA R Sbjct: 28 DPLVVRYLDWLATSRKLAAHTLTSYGHDLSVLQSQAIRLAPGVALLALETRHIRSFAARL 87 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNE-LKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL A ++A LSA R F+ W +++NP GV APK R LPK + V+ L Sbjct: 88 HGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVAL 147 Query: 123 LDIDINDPL-AVRDRAMLEVMYGAGLRLSELVGLDIK-----------HLDLESGEVWVM 170 + +D ++RD+A+ E+ Y +GLRLSEL+ LD++ LDL+ EV V+ Sbjct: 148 VAHRQDDTNESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAEVTVL 207 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDL------FGSEDDALFLSKLGKRISARNVQKRF 224 GKGS+ R +P+G A+ ++ W+ +R++ + ALFL G+R+ VQ+R Sbjct: 208 GKGSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHALFLGTRGRRLPISTVQQRI 267 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 + G+ + VHPH LRHSFATHML+SSGDLR VQE+LGHA++STTQIYT LDFQHLA Sbjct: 268 KRQALAAGVPSDVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLA 327 Query: 285 SVYDAAHPRAKRG 297 VYD AHPRA R Sbjct: 328 KVYDQAHPRAGRA 340 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 129/351 (36%), Positives = 175/351 (49%), Gaps = 60/351 (17%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW--QQCDVTMVRNFA 60 D + R+ YL ER S T Y R L E Q V +R Sbjct: 12 DWQRWLARFDDYLRTERGGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHL 71 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + AA++A +LSALRSFF +LV + L NPA+GV +PK + LP+ +DVDD Sbjct: 72 AGLYERN-DAATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAF 130 Query: 121 RLLDIDIN----------------------------------------------DPLAVR 134 RL++ +PL +R Sbjct: 131 RLIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLR 190 Query: 135 DRAMLEVMYGAGLRLSELVGLDIKHLD---LESGEVWVM-GKGSKERRLPIGRNAVAWIE 190 DRA+ EV+YG+GLR+ E LD+ +D L S V V GKG KER +P+GR AVA ++ Sbjct: 191 DRAIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALD 250 Query: 191 HWLDLRDLFGSED------DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 +L++R L ALFLS G R++ R+VQ+ + G PH LRH Sbjct: 251 AYLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVG-AYEATPHALRH 309 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 SFATH+L+S DLR +QELLGHA+L++TQIYT + HL +VYDA+HPRA+ Sbjct: 310 SFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRAR 360 >UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes RepID=A1ZPB9_9SPHI Length = 299 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 167/296 (56%), Gaps = 6/296 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRS 63 + ++ + YL +ER LS +L Y ++ ++ GL + ++ F Sbjct: 4 QSYIKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYL 63 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G+ A+S A LS +++F+ +L+ + ++ +P+ V P+ R +P + + ++ LL Sbjct: 64 AKLGIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLL 123 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ID++ P R+RAM+EV+Y +GLR++EL+ L I +L L+ G + ++GK +KER +PIG Sbjct: 124 AVIDLSTPEGARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIG 183 Query: 183 RNAVAWIEHWLD-LR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 R A ++ +++ +R + + +D +FL++ G +IS V E + + ++ Sbjct: 184 REAARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNIS 243 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH RHSFATH++ +++ VQE+LGH N++TT+IY LD L HPR+ Sbjct: 244 PHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPRS 299 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFA 60 L E +L +L++ + S T Y+R + + GL + + + ++ F+ Sbjct: 2 QLPAVTETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFS 61 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 K L S+A +L+ALRS F +L+ + +K NPA GV PK P+ ++VD + Sbjct: 62 ASLYYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVF 121 Query: 121 RLLDIDIN----------DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 LL N +A R+ A+LE++YG+GLR+SE + L++ + E G V V+ Sbjct: 122 LLLKGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVI 181 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGI 229 GKG+KER P+ ++ +E WL +R + + + ALF+ GKR+ R + E + Sbjct: 182 GKGNKERLAPLSDTSIVALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCL 241 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + GL PH LRHSFATH+LE +LR VQELLGHA LSTTQ YTH+ L YD Sbjct: 242 QAGLPLTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDK 301 Query: 290 AHP 292 AHP Sbjct: 302 AHP 304 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 160/294 (54%), Gaps = 8/294 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 D + +LRY +ER+LSP T +Y++ L+ + + D R + Sbjct: 3 FLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPY---DAQTARRYLYVL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 K L A++++ ++S + F ++ + + +++PK + LP ++ +LL Sbjct: 60 YEKQLAASTVSQKVSCFKQFGKFMAREQGGEP-LFHDLTSPKKKQSLPTFAVPTEVEQLL 118 Query: 124 DIDI---NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + + L RD A++EV+YG G+R++EL G+++ D V VMGKG KER +P Sbjct: 119 EAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVP 178 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 IG+ AV ++ +++LR G + ALFLS+ G R++ ++ G++ + P Sbjct: 179 IGQYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H LRHSFAT +LE DLR VQELLGH +LSTT YTH+ + L S+Y A HPR Sbjct: 239 HSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 160/295 (54%), Gaps = 3/295 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 +T+ + L+ L++ R SP T +Y+ L ++ ++ S Q D + ++ Sbjct: 5 VTENEEMITGLLQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHH-TSLMQADGKAILDYL 63 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + R G+ ++ R SAL ++F WL QN + +PA+ + + R LPK + D+ Sbjct: 64 AKLGRDGMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVE 123 Query: 121 RLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL DP+ +RDR MLE++Y G+R+SELV L +++++G + V+GKG KER + Sbjct: 124 RLLAAPETEDPVGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLI 183 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G A W++ WL LR LF + G ++ +N R + G+ P Sbjct: 184 PFGEEAGQWLQQWLLLRPA-KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSP 242 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+FATH+L DLR VQ LLGHA+++TT+IYTH+ + + + +HP Sbjct: 243 HTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHPLG 297 >UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales RepID=XERC_CHLFF Length = 312 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 21/306 (6%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQ------------------C 51 +L YL + SP TL NY L + F ++G S Sbjct: 7 AFLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLF 66 Query: 52 DVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 VR + + ++ ++ RLSA++SF + + L +P + + P+ P+ LP Sbjct: 67 TKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELP 126 Query: 112 KNIDVDDMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 I + + L+ D++ +RDR +LE+ Y +GLR+SE+V L+ +D S + + Sbjct: 127 SPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIR 186 Query: 171 GKGSKERRLPIGRNAVAWIEHWLD--LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWG 228 GKG KER +PI A W++ +L+ R + A+FL+ G R++ R++ ++F ++ Sbjct: 187 GKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKYL 246 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 GL+ ++ PH +RH+ ATH LE+ DL+ +Q LLGH++L TT IYTH+ + ++ Sbjct: 247 RLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHN 306 Query: 289 AAHPRA 294 +HP Sbjct: 307 ESHPHG 312 >UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae RepID=D1B6D4_THEAS Length = 292 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 146/292 (50%), Gaps = 7/292 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ +L YL S T++NY L + + + Q VR F G Sbjct: 2 IDSFLEYLKS-LGRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYG 60 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 AS ++S++R F +L ++ +P++GV P++ LP+ I D+ RLL+ Sbjct: 61 FAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGP 120 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + A RDR ++E++YG+GLR+SEL LD +D+E + VMGKGSK R +P G Sbjct: 121 SGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQD 180 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLG-KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 + W LF K G +R++ R V + + + GL V PH LRHSF Sbjct: 181 MLRRW----GEMVGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFG-VSPHTLRHSF 235 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 ATH+LE LR VQEL+GH +L TTQ Y + + + Y HPRA K Sbjct: 236 ATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHPRAGGDK 287 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 325 bits (835), Expect = 9e-88, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 17/297 (5%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 ++ + +L L+ R+LS T+ Y+ L ++ GL + ++R Sbjct: 20 NIEAILMDFLDELTYSRRLSGATVRAYRADLMPLLA-----GLDHISELSTPVIRAHLGA 74 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G +SLA +++R F WLV++ L A+P+ +S PK +HLP+ + + + Sbjct: 75 KHAEGAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEA 134 Query: 123 LD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 ++ + +A RD A++E++Y G+R+ EL D+ ++ + V+GKG K+R +P Sbjct: 135 IEKVSSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVP 194 Query: 181 IGRNAVAWIEHWLDLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G A A ++ WL +R + ALFL G R++ R ++ +W V Sbjct: 195 FGAPAEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-------DV 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHS AT M+E DLR VQE+LGH++L+TTQIYTH+ L V+ AHPRA Sbjct: 248 SPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S5H6_PROA2 Length = 335 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 99/316 (31%), Positives = 163/316 (51%), Gaps = 29/316 (9%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF------ASENGLQSWQQCDVTMVRNFAV 61 ++ +L Y+++ER S T Y+ + F ++ V VR F Sbjct: 20 LKGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMG 79 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 KGL S+A +L+A++SF+++L+ +K + V P+ + +P + + + Sbjct: 80 ELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEK 139 Query: 122 LLD-----IDINDPLAV-----------RDRAMLEVMYGAGLRLSELVGLDIKHLDLESG 165 L D + L RDRA+LEV+YG GLR+SE++GL ++++L+ Sbjct: 140 LFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDS 199 Query: 166 EVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF-------GSEDDALFLSKLGKRISAR 218 + V GKG K+R +P+G A + ++ ++R F + +F++K G+RI Sbjct: 200 LLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPV 259 Query: 219 NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHL 278 VQ+ ++ + +PH LRHSFATHML S DL+ V E+LGH NL+TT+IYTH+ Sbjct: 260 LVQRVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHV 319 Query: 279 DFQHLASVYDAAHPRA 294 F + VY AHP+A Sbjct: 320 TFGRIKEVYLKAHPKA 335 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 13/301 (4%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 T + L L ++ LS TL +Y+R LE + + + + ++ + Sbjct: 25 TTIAHCLDALWIKHGLSRHTLNSYRRDLEGLARWNNGRA-GPLATLTPPALLDYLTWRTQ 83 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 + S A S LR+FF + V NP+ ++ P P LPK + + LL Sbjct: 84 QHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143 Query: 126 D-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 I P +R+RAMLE+MY AGLR+SELV L + L+ G + + GKG KER +P+G Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVPLGEE 203 Query: 185 AVAWIEHWLD-LRDLFGSEDD---------ALFLSKLGKRISARNVQKRFAEWGIKQGL- 233 + W++ +L+ R ++ LF++ KR+S + + + G+ Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIA 263 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 N V PH LRHSFATH+L DLR +Q LLGH ++STTQIYT + QHL ++ HPR Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323 Query: 294 A 294 Sbjct: 324 G 324 >UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteriaceae RepID=XERC_BIFLI Length = 355 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 98/354 (27%), Positives = 152/354 (42%), Gaps = 63/354 (17%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T D++ ++ YL R LS TL Y+ L A ++ G+ + + +R++ Sbjct: 4 TQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMA 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R +S+A + A+R FF W +PA + P P LP + + Sbjct: 64 VESRDH-ARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQ 122 Query: 122 LLDIDIN---------------------------------------------------DP 130 LLD+ + Sbjct: 123 LLDVAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTA 182 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 + R+ A+LE++Y G+R++ELV +DI +D + + V GKG+K+R +P G A +E Sbjct: 183 ESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALE 242 Query: 191 HWLDL-RDLFGS---------EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 WL+ R + +ALFL G RI R + + G+ + PH Sbjct: 243 TWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPH 301 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHS ATH+L+ DLR VQE+LGH++L TTQ YTH+ + L + Y A PRA Sbjct: 302 ALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobacteriaceae RepID=A5FIL1_FLAJ1 Length = 297 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 161/298 (54%), Gaps = 7/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + ++ + + YL E++ SP T+ Y L F E S ++ + + +R++ V Sbjct: 1 MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G+ S+ ++++L++F+ +L+ +++ +P A K P+ + +++ L Sbjct: 61 LVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDL 120 Query: 123 LDIDINDPLA---VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + P+ VRD+ ++++ Y G+R +EL+GL +K++DL SG V V+GK SKER + Sbjct: 121 M-FGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 P+ I ++ R+ + + F+SK G ++S V + + + Sbjct: 180 PLLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKK 239 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRH+FATH+L + DL V+ELLGH++L++TQ+YTH L VY AHPR K Sbjct: 240 SPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK 297 >UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychrobacter RepID=Q1QE98_PSYCK Length = 349 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 130/302 (43%), Positives = 182/302 (60%), Gaps = 10/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMV-RNF 59 +++L V R+L LSV R SP TL Y L + F L +W +CD + ++ Sbjct: 39 LSELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKRL-TWTRCDKRQLAQHI 96 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + R L AS+ LSA+R F+ WL+ ++ + NP G ++PR LP DVD + Sbjct: 97 SQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLL 156 Query: 120 NRLLDIDINDP-----LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 +LLD +I D L +RD+AM E++Y +GLR+ ELV LDI +DL V V GKG+ Sbjct: 157 TQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGN 216 Query: 175 KERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKL-GKRISARNVQKRFAEWGIKQG 232 K R +P+G A I +L R+L+ + D ALF+S+ G R+S R VQ+R + G Sbjct: 217 KTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAG 276 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + +++PH LRH FA+HML SGDLR VQE+LGH+++STTQIYTH+DF L VYD AHP Sbjct: 277 IAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHP 336 Query: 293 RA 294 RA Sbjct: 337 RA 338 >UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGY7_KYTSD Length = 336 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 165/333 (49%), Gaps = 40/333 (12%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L +VE + +L +ER SP T+ Y L A+ G W+Q ++ +R+FA Sbjct: 4 TGLLREVEGFADHLLLERGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAA 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R GL ++LA ++ R+FF W+V+ L +P+ + +P+ + LP + + + Sbjct: 64 RRAAAGLARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQ 123 Query: 122 LLDIDINDP-------------------------------------LAVRDRAMLEVMYG 144 L++ P +RDRA+LE++Y Sbjct: 124 LVEGGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYA 183 Query: 145 AGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLF--GS 201 G+R+ ELV LD + L+ V V GKGSKER +P G A+ +E W+ R Sbjct: 184 TGIRVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGAR 243 Query: 202 EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQ 261 +ALFL G RI R V++ + + PH LRHS ATHM+++ D+R VQ Sbjct: 244 SGEALFLGVRGGRIDPREVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQ 303 Query: 262 ELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ELLGHA+L+TTQ+YTH+ + L +D +HPRA Sbjct: 304 ELLGHASLATTQVYTHVSVERLREAFDRSHPRA 336 >UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroidales RepID=B6YR66_AZOPC Length = 299 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 5/293 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 + +L +L ER S TL Y L F + + +++R + V Sbjct: 8 NQLSIFLCHLRYERNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLMD 67 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 + S+ +LS LRSFF +L ++++NP KG+ + R LP + +MN LL + Sbjct: 68 RNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLL-L 126 Query: 126 DINDPLAV---RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D++ RDR +LEV Y G+R SELVGL+ + +D ES + V GKG+K+R +P Sbjct: 127 DLSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFS 186 Query: 183 RNAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + + ++ +RD A F+ + G+ ++ V + + PH Sbjct: 187 KTLEEILSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKRSPHV 246 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FAT ML + +L V+ELLGH++L++T+IYTHL F+ L Y AHPRA Sbjct: 247 LRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 323 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 106/296 (35%), Positives = 171/296 (57%), Gaps = 6/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T +ER++R+L+ E+ LS L+ ++ LE F E Q + + F Sbjct: 1 MQTHLERFIRFLAAEKGLSTAYQLSVRQTLEEFARFL-EMDNTGLAQTGIDTLSAFLRHL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G+ +S+ + + LR FF WL L+ +P+ + P+ LP +D ++ LL Sbjct: 60 QDRGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLL 119 Query: 124 D-IDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 + IDI D PL RDRA+LE++Y G+R+SE++ ++ D + V V+GKG+K R +P+ Sbjct: 120 ESIDIQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPV 179 Query: 182 GRNAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 GR+A+ ++ +L+ R +FL+ G+ ++ +++ E GL HV Sbjct: 180 GRSALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVF 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR +QE+LGHA++STTQIYTHL+ Q L S++ HPR Sbjct: 240 PHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPRG 295 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 156/306 (50%), Gaps = 20/306 (6%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAII-----NFASENGLQSWQQCDVTMVRNFAVRSR 64 + +YL E+ S T Y + I + A E +W+Q D + + + Sbjct: 12 AFFKYLKTEKNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQ 71 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + +L + S+LRS +++ + NP + + A K + LP + +D++ LL Sbjct: 72 ESKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLS 131 Query: 125 IDI----------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 ND +A RD A+LE++Y GLR+ E + ++ ++LE + + GKG Sbjct: 132 SPAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGK 191 Query: 175 KERRLPIGRNAVAWIEHWLDLRDL----FGSEDDALFLSKLG-KRISARNVQKRFAEWGI 229 K+R +G A +E + R + S +D +F++ KR+SAR++Q+ + Sbjct: 192 KQRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQ 251 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 L + PHKLRHSFATH+L++ DLR VQELLGH NLSTTQIYTH+ L YD Sbjct: 252 SCQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQ 311 Query: 290 AHPRAK 295 AHP A+ Sbjct: 312 AHPHAQ 317 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 322 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 104/302 (34%), Positives = 162/302 (53%), Gaps = 10/302 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 ++L ++ ++ ++S LSP T+ Y + LEA ++ + + +R++ Sbjct: 8 SELLAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDP-SSRDLRSYLA 66 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 RR G + ++A LSALRSFF WL APK R LP + +++ Sbjct: 67 EFRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAA 126 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L D D++ P+ +RD AMLE+ G R+SEL L++ + + +V ++GKGSKER +P Sbjct: 127 LFDAPDLSCPVGLRDAAMLELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVP 186 Query: 181 IGRNAVAWIEHWLD--------LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 + A+ E +L+ L G A+F+S G+ +++ ++ RF K G Sbjct: 187 LYARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAG 246 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 +++ + PH +RH+FAT +L DLR VQELLGHA+LSTTQIYTHL L S AHP Sbjct: 247 ISSDITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHP 306 Query: 293 RA 294 R Sbjct: 307 RG 308 >UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteraceae RepID=D2QBI8_9SPHI Length = 298 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 154/294 (52%), Gaps = 6/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQSWQQCDVTMVRNFAVRSRRKG 67 + +L ++ E++LS TL Y LE F +E + ++ D VR++ V G Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--I 125 + +S+ +++ LR+FF +L+ + + +P + A KA + LP+ ++ M LLD Sbjct: 65 MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + +RD+ +LE++YG G+RLSEL GL ++L + V+GK +K R +P+ + Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184 Query: 186 VAWIEHW--LDLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 I+ + L ++ G D A L +S G +Q+ PH L Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLGTKSPHVL 244 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RH+FATH+L DL +++LLGH++L+ TQIYTH L YD AHP+AK+ Sbjct: 245 RHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHPKAKK 298 >UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga RepID=C7M6X5_CAPOD Length = 307 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 93/300 (31%), Positives = 158/300 (52%), Gaps = 10/300 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA----SENGLQS-WQQCDVTMVRNFAVR 62 + ++ YLS+E + S T+ Y+ L + F E G +Q D ++ + + Sbjct: 3 INAFIIYLSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIH 62 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPA-KGVSAPKAPRHLPKNIDVDDMNR 121 + + S+ +LSAL++++++L +++ +P KG+ K + ++ + Sbjct: 63 LSDETISFRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEK 122 Query: 122 LLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +L + VR+RA++E +Y G+R SEL GL + +D E ++ V+GKG KER + Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182 Query: 180 PIGRNAVAWIEHWLDLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 PI ++ +L LR+ +E D LFL K GK+I + V + + V Sbjct: 183 PIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDV 242 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFA+H+L++ DL V+ELLGH++L++TQ+YT+ L Y AHPRAK Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKGN 302 >UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM7_9FIRM Length = 304 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 161/291 (55%), Gaps = 5/291 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT L +YL Y+S++ S T+ Y+ L F ++ + Q D M+ + Sbjct: 1 MT-LEEAFRQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEYV 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R AAS+ ++A+R F +L + + +PA+ + + + LP D++ Sbjct: 60 RVLARDH-AAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDEIE 117 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +++ + P +R A+ E++YG GLR+SE L + +DLE G + + GKG+KER +P Sbjct: 118 KIMAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVP 177 Query: 181 IGRNAVAWIEHWLD-LRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + + + + ++D +R L+ LF+++LGK+ + +++ I+ G+ + Sbjct: 178 MPKQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPIT 237 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 PHKLRH++ATHMLE DLR VQELLGH++++TTQIYTH+D L + YD Sbjct: 238 PHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYDE 288 >UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteriales RepID=C6Y269_PEDHD Length = 294 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 96/292 (32%), Positives = 157/292 (53%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE +L YL E++ S T+ +YQ L +F + + +RNF V Sbjct: 3 VEHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVALMEDE 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID- 126 + S+ +LSALRSF+ +L+ +N L +NP V APK P+ LP +D ++ LLD + Sbjct: 63 ISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLLLDSEE 122 Query: 127 --INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ++RD+ ++E ++G G+RL+EL+ L ++ + VMGK SKER +PIG+ Sbjct: 123 FFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIVPIGKT 182 Query: 185 AVAWIEHWLDLRDL--FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 +++L+ L F ++ LF++ G + + + + + PH L Sbjct: 183 LREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKKSPHVL 242 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHS+AT +L DL ++ELLGHA+L+ TQ+YTH + L ++Y AHP+A Sbjct: 243 RHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHPKA 294 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 42/335 (12%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 +L + YL +L VER ++ T+L+Y+R L + F + G V +F V Sbjct: 19 ELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVADVTAADVSDFLVC 78 Query: 63 SR-----RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 R R L A+S A + A R + +L+++ +A+P++ V P R LPK + V+ Sbjct: 79 LRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRLPKALPVE 138 Query: 118 DMNRLLDI----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG-------- 165 + RLLD D + P +RDRA+LE++Y G R+SE+VGLD+ +DL G Sbjct: 139 AIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDDIDLGPGRLAGRSST 198 Query: 166 ----------------EVWVMGKGSKERRLPIGRNAVAWIEHWL-DLRDLFGSEDDA--- 205 V + GKG+KER +P+G A+ +E +L R + + Sbjct: 199 DPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVLAAAGRGAGP 258 Query: 206 ----LFLSKLGKRISARNVQKRFAEWGIKQGLNNH-VHPHKLRHSFATHMLESSGDLRGV 260 LFL+ G R+S ++ + A+ + GL V PH LRHSFATH+LE D+R V Sbjct: 259 ARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRSV 318 Query: 261 QELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 QELLGHA+++TTQIYT + L VY AHPRA+ Sbjct: 319 QELLGHASVTTTQIYTLVTVDALREVYVTAHPRAR 353 >UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W041_9ACTO Length = 302 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 161/295 (54%), Gaps = 9/295 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + +L R S T Y+ ++A + + N + + +R+F RKG Sbjct: 9 LKDFTTWLEHFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNRIRKG 68 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--- 124 AS+A ++LR F W + Q L ++P+ + K HLP+ + ++ +N+L + Sbjct: 69 HARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLFNHLV 128 Query: 125 --IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + A+RD A E++Y G+R++ELVGL++ +D + + V+GKG+KER +P G Sbjct: 129 ETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERLVPFG 188 Query: 183 RNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ + W+ R +E ALFL G RI R V++ + ++ G+ + P Sbjct: 189 TPALESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPV-LSP 247 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH ATHMLE DLR VQ++LGHA+L+TTQ YTH+D L+++ AHPRA Sbjct: 248 HGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302 >UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB85_BRAFD Length = 332 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 159/320 (49%), Gaps = 33/320 (10%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + +L +ER S T+ Y+R+ ++ + + DVT +R++ G Sbjct: 13 LDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSARAETG 72 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-- 125 A++LA +++R+F WL S + + + AP+ RHLP + D LLD Sbjct: 73 ASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLDGLD 132 Query: 126 -----------------------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDL 162 + + +RD A+LE++Y +GLR+SELV LD +D Sbjct: 133 GSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSRIDR 192 Query: 163 ESGEVWVMGKGSKERRLPIGRNAVAWIEHW--------LDLRDLFGSEDDALFLSKLGKR 214 + G V V GKG +ER +P+G A+ ++ W L DALFL G R Sbjct: 193 QHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGVRGGR 252 Query: 215 ISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQI 274 + R V+ + G++ HV PH LRHS ATH++E DLR VQ+ LGH++L+TTQI Sbjct: 253 LGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQI 312 Query: 275 YTHLDFQHLASVYDAAHPRA 294 YTH+ + L D AHPRA Sbjct: 313 YTHVSAERLRRTVDQAHPRA 332 >UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepID=Q2J882_FRASC Length = 443 Score = 319 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 164/321 (51%), Gaps = 35/321 (10%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +ERYL +L ER L+ ++L Y+R L + S GL S V FA R Sbjct: 93 IERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFAAVLRTGD 152 Query: 68 -----LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 L AAS+A L A+RS + + ++ + ++ V P PR LPK + +D + + Sbjct: 153 DTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSIDQVVAV 212 Query: 123 LDI--------------------------DINDPLAVRDRAMLEVMYGAGLRLSELVGLD 156 L +R A+LE++YG G R+SE VGLD Sbjct: 213 LAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISEAVGLD 272 Query: 157 IKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGK 213 + LDLE+ V + GKG ++R +P+GR A+A + +L + R + A+FLS+ G Sbjct: 273 VDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVFLSRRGN 332 Query: 214 RISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQ 273 R+S ++ + G+ V PH LRHSFATH+L+ D+R VQELLGHA++STTQ Sbjct: 333 RLSRQSAWSVLRTAALAAGVEG-VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQ 391 Query: 274 IYTHLDFQHLASVYDAAHPRA 294 IYT + L VY A+HPRA Sbjct: 392 IYTLVTVDRLREVYAASHPRA 412 >UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV23_9GAMM Length = 345 Score = 319 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 121/303 (39%), Positives = 178/303 (58%), Gaps = 10/303 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 TD V R+L LS ++ S T+ +Y++ L+ + + E + +F + Sbjct: 45 TDDQALVNRWLAELS-NKRYSAATIKSYRQALQPFLAYCYEQH-TELCHITRQQLSDFLI 102 Query: 62 RSRR-KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R + +S L+ LR + WL+ Q + NP + +APR LP +D+D ++ Sbjct: 103 RRLDVDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLS 162 Query: 121 RLLDIDI-----NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 +LLD L +RD+AMLE++YG+GLR+ ELVGL++ +D + V+GKG K Sbjct: 163 QLLDQAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGK 222 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKL-GKRISARNVQKRFAEWGIKQGL 233 R +PIG A + ++L R L+ E D A+F+S+ G RIS R VQ R + G+ Sbjct: 223 TRIVPIGEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGV 282 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++PH LRH FA+H+L SGDLRGVQELLGH+++STTQIYTHLDF HL+ VYD AHPR Sbjct: 283 AQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHPR 342 Query: 294 AKR 296 ++R Sbjct: 343 SRR 345 >UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E0_ACIC5 Length = 310 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 170/303 (56%), Gaps = 11/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW--QQCDVTMVRNFAV 61 ++ VE YL L ER SP TL Y R+L +A + + + T +R + Sbjct: 8 MNQRVEAYLAALRNERGSSPHTLRAYTRELRDFAAYAERLLGKDVGVKAMEHTHIRAYLG 67 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 +GL AS A L+A+RS+ WL EL+ +PA V+ PK P+HLP+ ++DMNR Sbjct: 68 ELYERGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNR 127 Query: 122 LLDIDINDPLA--VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L+D + A RDR +LE++YG G+R +ELVG++++ + + + V GKG KER + Sbjct: 128 LVDASSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYV 187 Query: 180 PIGRNAVAWIEHWLDLRDLF----GSEDDALFLSKL---GKRISARNVQKRFAEWGIKQG 232 PIG A + +L R+ G + AL L+ R++ R+V + + + QG Sbjct: 188 PIGDAAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQG 247 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L VHPH LRH+F TH+LE DLR +QELLGH LSTTQ YT L + +VYD HP Sbjct: 248 LPADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHP 307 Query: 293 RAK 295 RAK Sbjct: 308 RAK 310 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 9/305 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ + +L ++VER + TL Y + LE F S +G D + + Sbjct: 1 MSQGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSG-HDLHDADAETIEAYF 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +GL A+ A R SA+R F+ +++ + +P++ V+APKA R LPK ++ D++ Sbjct: 60 QDLGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIE 119 Query: 121 RLLDIDI--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 RLL + +R M+E++Y +GLR+SEL+ L + L + + V GKG KER Sbjct: 120 RLLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERL 179 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSE----DDALFLSKLG-KRISARNVQKRFAEWGIKQGL 233 P+ A A ++ +L R F + LF S+ R++ R V + + I G+ Sbjct: 180 APLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGI 239 Query: 234 NN-HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + V PH LRH+FATH+LE DLR +Q LLGHA+++TTQIYTH+ +HLA + HP Sbjct: 240 DRQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHP 299 Query: 293 RAKRG 297 ++ Sbjct: 300 LGRKK 304 >UniRef50_B5ENS4 Integrase family protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ENS4_ACIF5 Length = 314 Score = 319 bits (818), Expect = 8e-86, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 176/302 (58%), Gaps = 9/302 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T + +++ L ++SP T+ Y R L A FA + G Q D +R + + Sbjct: 3 IETAIAQFIETLRQGGRVSPATISAYSRDLHAWARFALQRGQTEIAQMDRGSLRAYLLAE 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R +G+ SL +ALR+ + L NP G++ P+A + LP + VD L+ Sbjct: 63 RSRGVSVRSLRRHFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLM 122 Query: 124 -------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 + D +RD+ +LE++Y + LR+SEL GL++ LD +G V V+GKG KE Sbjct: 123 QPAISDTEAAPQDFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKE 182 Query: 177 RRLPIGRNAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 R +P+G+ A A + +L R S++ ALF+++ G+R++ R++Q R + G L Sbjct: 183 RIVPVGQPAWAALRAYLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLG-DARLGQ 241 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 +HPH LRHS A+H+L+SSGDLR VQE LGHA + TT IYTH+D+Q LA VYD AHPR++ Sbjct: 242 PLHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSR 301 Query: 296 RG 297 RG Sbjct: 302 RG 303 >UniRef50_C6XMJ6 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XMJ6_HIRBI Length = 318 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 11/295 (3%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFA-----SENGLQSWQQCDVTMVRNFAVRSR 64 ++ +L+ ER++S T+ Y+R + + F E + + VR + R Sbjct: 25 AFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTPSDVRAWLAFRR 84 Query: 65 -RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 L A S++ LSA+R+FF +L Q + + V APK P+ LP+ + + LL Sbjct: 85 ANDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPRPVSQEIAKNLL 144 Query: 124 ----DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + D+ +A RD AM+ +MYGAGLR+SE + L + + + GKG+K R + Sbjct: 145 KEVENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADV-PARDILRIQGKGNKVRLV 203 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P+ + + + R E+ LF GK+++ R +QK + I GL + P Sbjct: 204 PLIPAVRDALNVYYEKRPFLSDEEGPLFRGVKGKKLNPRIIQKLIEKLRISMGLPDTATP 263 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+L + DLR +Q LLGHA+LS+TQIYT ++ L +++ AAHPRA Sbjct: 264 HALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHPRA 318 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 156/294 (53%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 D+ R+L +L +E L+ +L Y R L + + + + + + D + F + Sbjct: 16 DEDLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQ-RRLRDADAADLSLFLAQRL 74 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + G S+A +LS+LR F+ + + +P+ + RHLP +++ LL Sbjct: 75 QGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDALLA 134 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D L +RD AMLE +Y GLR+SELVGL LDLE+G V +GKGSKER +P+G Sbjct: 135 APDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIPVGE 194 Query: 184 NAVAWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A+ + +L L + ALFL+ G+ +S + + K G+ + PH Sbjct: 195 VALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSAFSPH 254 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L+ DLR VQ +LGHA L+TT+IYTH+ L +++ HPR Sbjct: 255 SLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPRG 308 >UniRef50_C9LEJ3 Integrase/recombinase XerC n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ3_9BACT Length = 299 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 97/290 (33%), Positives = 147/290 (50%), Gaps = 4/290 (1%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINF-ASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +R+L YL+ ++ SP+T++ Y+ LE F S+ +WQ D +VR + V G Sbjct: 10 QRFLSYLASDKGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWIVWRMDDG 69 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID- 126 + ++ LSALRSF+ +L+ ++ +P V PK+ + LP + +M+RL D Sbjct: 70 IVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLFDKTH 129 Query: 127 -INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 RD +L Y G+R +EL+ + +DL EV V GK +K+R +P G Sbjct: 130 FPETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRIIPFGAEL 189 Query: 186 VAWIEHWLDLR-DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 + + R DL LF+ G+ + V + ++ PH LRH Sbjct: 190 AEAFQAYYAARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIKKRSPHVLRH 249 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 SFAT ML + DL V+ELLGH+NL+TT IYTH+ + L Y AHPRA Sbjct: 250 SFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHPRA 299 >UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipplei RepID=Q83MV4_TROWT Length = 316 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 154/295 (52%), Gaps = 12/295 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFA----SENGLQSWQQCDVTMVRNFAVRS 63 + ++ YL R S T Y R L + S ++S + + +R++ Sbjct: 26 IREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYSQ 85 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 K A S+ +S+L+SFF W + N A + APK+ LP + + ++L Sbjct: 86 SHK--SARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQIL 143 Query: 124 DIDINDP--LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 + + +R+ A+ E++Y + +R+SELV LD+ +D + V V GK K+R + Sbjct: 144 GNFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLF 203 Query: 182 GRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G+ A ++ +L++R S+ ALFL G+RI+ R V + +E P Sbjct: 204 GKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPR--GP 261 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHS ATHML++ DLR +QE+LGH++LSTTQIYTH+ + L S Y+ AHPRA Sbjct: 262 HVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 316 >UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=Thermoanaerobacteraceae RepID=XERDL_THETN Length = 290 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 88/299 (29%), Positives = 168/299 (56%), Gaps = 20/299 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + V +L +L ++LS TL +Y R +E + + +E+G+ ++ + + N+ + Sbjct: 3 ESVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGI-NFCSAKKSTIVNYLYFLK 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 ++G A+++ LS++++F+ +L ++ +++ +P+ G++APK + P + V+ ++ LL Sbjct: 62 QQGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLS 121 Query: 125 IDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D D +RD+A++E+MY +GL++SE++ L I+ ++L SG + V KER +PIG Sbjct: 122 FDFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVRS--GKERVIPIGS 179 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 AVA ++ +++ + ALFL+ GKR++ + K E+ K + P+ LR Sbjct: 180 YAVAALQEYIEKGRKPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLPLTPNILR 239 Query: 244 HSFATHMLESSGDLRGVQELLGHA--------NLSTTQIYTHLDFQHLASVYDAAHPRA 294 SFA HML++ DL+ VQE+LG+ +L + + VY+ HPRA Sbjct: 240 KSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSL--------VSRSKMKEVYNKFHPRA 290 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 161/303 (53%), Gaps = 17/303 (5%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 + ++L L ER LS ++L+Y+R L N+ ++ L +RN+ Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELN-ITTDNIRNWVEYLAENS 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L A S+ ++S ++S++++L+S+N NP + PK LP+ + +DD+ LL+ Sbjct: 63 LQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYCS 122 Query: 128 ND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHL--DLESGEVW----VMGKGSKERRL 179 D P R AM+ ++Y +GLR+SELV L + + + S EV V+GKG+KER + Sbjct: 123 QDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERII 182 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDD-----ALFLSKLG-KRISARNVQKRFAEWGIKQGL 233 I A+ + +L +RD F ++ LF S ++ +N + GL Sbjct: 183 VINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAGL 242 Query: 234 -NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 H+ PH LRHSFA+H+LE DLR +QELLGHA++STTQIYTHL HL HP Sbjct: 243 NPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHP 301 Query: 293 RAK 295 +K Sbjct: 302 LSK 304 >UniRef50_Q8UC70 Tyrosine recombinase xerC n=18 Tax=Alphaproteobacteria RepID=XERC_AGRT5 Length = 315 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 153/301 (50%), Gaps = 9/301 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-----NGLQSWQQCDVTMVR 57 DL + + +L L+ ER+L+ T+ Y+R + F + ++ +R Sbjct: 15 DLLNERQSWLATLAGERRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLRPVDLR 74 Query: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 F R++G GA SL L+ LRS L + + A A + APK P+ LPK + Sbjct: 75 AFLANRRKEGAGARSLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPKPLTDR 134 Query: 118 DMNRLLDIDI----NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 ++ + +A R+ A+L ++YG GLR+SE +GL + + + GKG Sbjct: 135 QALKITTAEAQLNEEPWIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLRITGKG 194 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 +K R +P+ ++ + L + D+ +FL G ++ +Q+ + GL Sbjct: 195 NKTRIVPLLAVVTEAVDTYRKLCPYALAADEPMFLGARGGKLQPAIIQREMQKLRGAFGL 254 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + PH LRHSFATH+L GDLR +QELLGHA+LSTTQ+YT +D L +YD AHPR Sbjct: 255 PENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHPR 314 Query: 294 A 294 A Sbjct: 315 A 315 >UniRef50_A9KMU3 Integrase family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMU3_CLOPH Length = 291 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 90/292 (30%), Positives = 154/292 (52%), Gaps = 2/292 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++E +L Y + + TL Y+ L+ F EN + ++ TM+ +F ++ Sbjct: 1 MEKEIEDFLIYQKNIKNATDNTLSAYRIDLKRWYLFLQENSVSESKKITETMINSFLLQQ 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++G A++ L ++RSF +L+ +L +P + + PK P+ + + + LL Sbjct: 61 EKEGKSKATVNRNLVSIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D N +RD+AMLE+MY G+++SE+ GL + ++L+ G V V + K R +P G Sbjct: 121 SAPDSNTKRGLRDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVR-ELKKNRVVPFG 179 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + A A +E +L D E LFL + G+ ++ + V K +G + GL + P + Sbjct: 180 QAARASLEAYLASEDDVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAI 239 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 R+SFA HM+E+ DL ++EL+GHAN++ TQ YT Y HPRA Sbjct: 240 RNSFAIHMIENGADLNSMKELMGHANITATQHYTKQRIGETFGTYHKTHPRA 291 >UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHC9_ACHLI Length = 306 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 160/300 (53%), Gaps = 9/300 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFAVRSRR 65 + Y YL +E+ S T ++Y ++ +F + GL + RN+ Sbjct: 4 ISDYKDYLIIEKNFSEHTAISYINDVKGFEDFLIKEGLAKDLLGARRPRLARNYISYLDN 63 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 + ++A +LS+L++F+++L+ + ++ N + APK + LP ID + +N L D Sbjct: 64 QDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYLFDS 123 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ID + PL R+ +L+++Y G+R SEL+ L+IK + L SG++ + GKG K+R + + Sbjct: 124 IDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRYIILHEK 183 Query: 185 AVAWIEHWLD-LRDLFGSEDD-----ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + I H+L +R S+ D LF++ G ++ R ++ + G +H Sbjct: 184 LIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSGETYAIH 243 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 PH LRH+FAT ML DLR VQELLGH +L +TQIYTH+ + L Y HPR + + Sbjct: 244 PHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPRNQHNE 303 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 157/299 (52%), Gaps = 9/299 (3%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 + + LSVER SP T Y L + N A + + F Sbjct: 4 DPLTAFFEMLSVERNASPRTREAYGHDLLDLRNHAG-IDADGLLTLNEGDIAGFFAALDA 62 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 +GL +++L + +A+R F+ + V + +P++ ++A K R LPK + +++ L+ Sbjct: 63 RGLASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAA 122 Query: 126 D--INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + A R + ++E+ Y +G+R+SE+V L + + + + V GKG ER +P+ Sbjct: 123 ADAKDAHQATRLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNP 182 Query: 184 NAVAWIEHWLDLRDLF----GSEDDALFLSKLG-KRISARNVQKRFAEWGIKQGLNN-HV 237 +A A I+ +LD+R LF + LF S+ ++ R V + E ++ G++ V Sbjct: 183 SARAAIKDYLDIRPLFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARV 242 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRH+FATH+LE DLR VQ LLGHA++STTQ+YTH+ + L V + HP +KR Sbjct: 243 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLSKR 301 >UniRef50_D0L0D4 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0D4_HALNC Length = 329 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 117/300 (39%), Positives = 168/300 (56%), Gaps = 3/300 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T LH E +L+ L+P T Y + + + + + Q D +R + Sbjct: 11 TALHAAFECARAWLTESATLAPKTQAAYLGDWQQLQSHLHDQDVIKPDQIDDRRLRGYLA 70 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R GL S+A + SA R + + + +PKA + LP ++ MN+ Sbjct: 71 HCRESGLDNRSIARKSSATRWLLRYWQKIHIACPASPDALKSPKAAKKLPDAPAIETMNQ 130 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD + D L +RDR M E++Y +GLR++ELV LD+ +D G V GK K R +P Sbjct: 131 LLDQPMVEDELLIRDRCMFELIYSSGLRVAELVRLDVHDIDRSEGIARVTGKREKTRLVP 190 Query: 181 IGRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +G A+ + WL +R + + ALFL++ G+R++ R+VQ R + L +H Sbjct: 191 VGGKALDRVALWLPIRKTLLKDTTEPALFLNRRGQRLTIRSVQMRLNRLAQQTHLGQTLH 250 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 PH+LRH+FATH+LESSGDLR VQE+LGH +LSTTQIYTHLDFQ LA VY++AHPRA K Sbjct: 251 PHQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQRLAQVYESAHPRAHIKK 310 >UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0Y3M6_9CAUL Length = 313 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 161/303 (53%), Gaps = 14/303 (4%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V+ +L ++VER + TL Y + LE F + + D V + +G Sbjct: 9 VDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGRSK-RDLDDADAEAVEAYFQDLGARG 67 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L A+ A R SA+R F+ +++ + +P++ V+APKA R LPK ++ ++ RLL Sbjct: 68 LSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAAT 127 Query: 128 -------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + +R ++E++Y +GLR+SEL+ L + L + + V GKG KER P Sbjct: 128 APNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAP 187 Query: 181 IGRNAVAWIEHWLDLRDLF----GSEDDALFLSKLG-KRISARNVQKRFAEWGIKQGLNN 235 + A A + +L R F E LF S+ G R++AR V + + I G++ Sbjct: 188 LNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDR 247 Query: 236 -HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRH+FATH+LE DLR +Q LLGHA+++TTQIYTH+ +HLA V HP Sbjct: 248 DKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHPLG 307 Query: 295 KRG 297 ++ Sbjct: 308 RKK 310 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 403 e-111 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 401 e-110 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 401 e-110 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 401 e-110 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 398 e-109 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 397 e-109 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 395 e-108 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 395 e-108 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 393 e-108 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 392 e-108 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 390 e-107 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 389 e-107 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 389 e-107 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 389 e-107 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 388 e-107 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 388 e-106 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 387 e-106 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 386 e-106 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 386 e-106 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 384 e-105 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 384 e-105 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 383 e-105 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 379 e-104 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 379 e-104 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 378 e-103 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 378 e-103 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 378 e-103 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 377 e-103 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 377 e-103 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 377 e-103 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 376 e-103 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 376 e-103 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 376 e-103 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 375 e-103 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 375 e-103 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 375 e-103 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 375 e-102 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 375 e-102 UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 375 e-102 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 375 e-102 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 374 e-102 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 374 e-102 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 374 e-102 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 373 e-102 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 373 e-102 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 373 e-102 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 373 e-102 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 372 e-102 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 372 e-101 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 371 e-101 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 371 e-101 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 371 e-101 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 371 e-101 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 370 e-101 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 370 e-101 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 370 e-101 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 370 e-101 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 370 e-101 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 369 e-101 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 369 e-101 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 368 e-101 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 368 e-100 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 368 e-100 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 368 e-100 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 368 e-100 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 368 e-100 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 367 e-100 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 367 e-100 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 367 e-100 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 367 e-100 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 367 e-100 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 366 e-100 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 366 e-100 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 366 e-100 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 366 e-100 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 364 2e-99 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 364 2e-99 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 364 2e-99 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 364 3e-99 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 364 3e-99 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 364 3e-99 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 364 3e-99 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 363 3e-99 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 363 3e-99 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 363 3e-99 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 363 4e-99 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 363 4e-99 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 363 5e-99 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 363 5e-99 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 363 6e-99 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 362 8e-99 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 362 8e-99 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 362 9e-99 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 361 1e-98 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 361 2e-98 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 361 2e-98 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 361 2e-98 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 360 3e-98 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 360 4e-98 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 360 4e-98 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 360 4e-98 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 359 4e-98 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 359 4e-98 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 359 6e-98 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 359 8e-98 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 359 8e-98 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 359 9e-98 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 358 1e-97 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 358 2e-97 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 357 3e-97 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 357 3e-97 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 357 3e-97 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 357 3e-97 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 357 3e-97 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 356 4e-97 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 356 4e-97 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 356 6e-97 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 356 6e-97 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 355 9e-97 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 355 9e-97 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 355 1e-96 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 355 1e-96 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 355 1e-96 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 354 2e-96 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 354 2e-96 UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacil... 354 2e-96 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 354 2e-96 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 354 2e-96 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 354 3e-96 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 354 3e-96 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 353 3e-96 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 353 4e-96 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 352 8e-96 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 352 8e-96 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 352 9e-96 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 351 1e-95 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 351 1e-95 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 351 2e-95 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 351 2e-95 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 351 2e-95 UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira Rep... 351 2e-95 UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella den... 350 4e-95 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 350 4e-95 UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular orga... 349 5e-95 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 349 7e-95 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 349 7e-95 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 349 8e-95 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 349 8e-95 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 349 8e-95 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 348 2e-94 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 348 2e-94 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 348 2e-94 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 348 2e-94 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 348 2e-94 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 347 2e-94 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 347 2e-94 UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desu... 347 3e-94 UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 346 5e-94 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 346 5e-94 UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriace... 346 5e-94 UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax... 346 6e-94 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 346 6e-94 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 346 7e-94 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 346 7e-94 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 345 9e-94 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 345 9e-94 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 345 1e-93 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 345 1e-93 UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomi... 344 1e-93 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 344 2e-93 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 344 2e-93 UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n... 344 2e-93 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 344 2e-93 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 344 2e-93 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 344 2e-93 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 344 2e-93 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 344 3e-93 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 343 3e-93 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 343 7e-93 UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum t... 341 1e-92 UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales R... 341 2e-92 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 341 2e-92 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 341 2e-92 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 341 2e-92 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 341 3e-92 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 340 3e-92 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 340 3e-92 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 340 4e-92 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 340 4e-92 UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes ... 340 4e-92 UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales ... 340 4e-92 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 340 5e-92 UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepI... 339 6e-92 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 339 6e-92 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 339 7e-92 UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteria... 339 7e-92 UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella Rep... 339 8e-92 UniRef50_A6LE90 Tyrosine type site-specific recombinase n=8 Tax=... 339 9e-92 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 339 9e-92 UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobact... 338 1e-91 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 338 1e-91 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 338 1e-91 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 338 1e-91 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 338 2e-91 UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilag... 338 2e-91 UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Br... 338 2e-91 UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella a... 337 3e-91 UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alpha... 336 4e-91 UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochlori... 336 6e-91 UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID... 336 7e-91 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 335 1e-90 UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulos... 334 2e-90 UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroi... 334 2e-90 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 334 2e-90 UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae ... 334 2e-90 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 334 3e-90 UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Prote... 333 3e-90 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 333 4e-90 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 333 5e-90 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 333 5e-90 UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferro... 333 5e-90 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 332 6e-90 UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteracea... 332 1e-89 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 331 1e-89 UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybac... 331 1e-89 UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyc... 331 2e-89 UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcu... 330 3e-89 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 330 3e-89 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 330 4e-89 UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga ... 330 5e-89 UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobact... 329 5e-89 UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdema... 329 6e-89 UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepI... 329 9e-89 UniRef50_C6XMJ6 Integrase family protein n=1 Tax=Hirschia baltic... 329 1e-88 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 328 1e-88 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 328 1e-88 UniRef50_C5CH36 Integrase family protein n=1 Tax=Kosmotoga olear... 328 1e-88 UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acido... 328 2e-88 UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipple... 327 2e-88 UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter seg... 327 4e-88 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 326 4e-88 UniRef50_C9LEJ3 Integrase/recombinase XerC n=1 Tax=Prevotella ta... 326 6e-88 UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteria... 326 8e-88 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 325 1e-87 UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter ... 325 1e-87 UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n... 325 1e-87 UniRef50_A6G048 Site-specific recombinase, phage integrase famil... 324 2e-87 UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychr... 324 2e-87 UniRef50_B5ENS4 Integrase family protein n=2 Tax=Acidithiobacill... 324 2e-87 UniRef50_A9KMU3 Integrase family protein n=1 Tax=Clostridium phy... 324 3e-87 Sequences not found previously or not previously below threshold: >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 178/302 (58%), Gaps = 10/302 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-----WQQCDVTMVRN 58 + D++ +L YL VE+ S T Y+ L ++ FA + +S W+ + Sbjct: 1 MRDDIQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLA 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + + + + ++ +++A +SFF+++V++ +LK NP + +S PK + LP I + Sbjct: 61 YMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQ 120 Query: 119 MNRLLDIDIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 + LL+ + A RD+AMLE++Y +G+R++ELV L++ +DL+ G V GKG KE Sbjct: 121 VRALLNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKE 180 Query: 177 RRLPIGRNAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 R +PI A I+ +L ++R + ALFL++ G R++ + + + + + GL Sbjct: 181 RMIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGL 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++ V PH LRHSFATHML DLR VQELLGHAN+STTQIYTHL +H+ Y+ AHPR Sbjct: 241 DDVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPR 300 Query: 294 AK 295 AK Sbjct: 301 AK 302 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 401 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 173/294 (58%), Gaps = 4/294 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 ++ ++RYL Y+ +R SP TL Y+ L ++F G +R + Sbjct: 8 DNIQRFIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLA 67 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 ++K ++A +L+++RS + +L L+ NP + + PK + LP + V+D Sbjct: 68 FLKKKNPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEI 127 Query: 122 LLDIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL+ + +RD+A++E +Y G+R+SELVG++I +D SG V V GKGSKER LP Sbjct: 128 LLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILP 187 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 +G +A+ I+ +L+ R +++ALFL+K R++ R+V + ++ K ++ V PH Sbjct: 188 VGNHALNAIQLYLEKRKA---DNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPH 244 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+L++ DLR VQE LGH++LSTTQIYTH+ + L VYD HPRA Sbjct: 245 TFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 182/298 (61%), Gaps = 6/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ ++ L+++ LS T+++YQR L F E ++ W++ D +++ F Sbjct: 1 MQRNLDYFVDSLAIQ-GLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ G +S + +S L+ FF +L + ++ NP + + PK + LPK + VD++ ++L Sbjct: 60 KQDGYATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVL 119 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D + L +RD+AMLE++Y G+R+SEL+ L + L LE G + +GKG+K+R +PIG Sbjct: 120 NSCDTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIG 179 Query: 183 RNAVAWIEHWLD-LRDLFGSED---DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + A W++H+L R + E + LFL+ G + + K + + G++ V Sbjct: 180 QAATNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVS 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFATH+LE+ DLR VQELLGH+++STTQIYTHL + + +Y AHPRAK+ Sbjct: 240 PHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRAKK 297 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 111/297 (37%), Positives = 175/297 (58%), Gaps = 6/297 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNFAVR 62 ++ +E +L +L VER LS T+ Y+R L +++ GL + + + F Sbjct: 1 MNDLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +R++G A S+A +++LRSFF +L+ ++ +P + PK + LPK +++DD+ +L Sbjct: 61 ARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKL 120 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L D + PL +RD+AM+E++Y GLR++ELV L + L L G + +GKG KER +P+ Sbjct: 121 LSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPL 180 Query: 182 GRNAVAWIEHWLDL-RDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G+ A +E +L+ R +D +FL+ G+ ++ + K + G+ + Sbjct: 181 GKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPI 240 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQELLGHA++STTQIYTH+ L VY HPRA Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 398 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 167/293 (56%), Gaps = 4/293 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 ++ YL YL+VE+ S TL Y R L E G++ + V + +R Sbjct: 4 QLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKR 63 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 KGL A S+ L+ALR F+ +L+ + +++ NP + K LP + ++M++LL Sbjct: 64 KGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQ 123 Query: 126 DI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 A+RD AMLE+MY GLR+SEL+ L ++ + G + V GKG+KER +PIG+ Sbjct: 124 PGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQV 183 Query: 185 AVAWIEHWL-DLRDL--FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + + ++R G++ + LFL+K G+ ++ + K ++ +K GL VHPH Sbjct: 184 AYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHT 243 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFA+H+LE DLR VQ +LGHA++STTQIYTH+ +HL ++ HPR Sbjct: 244 FRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPRG 296 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 174/295 (58%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T +E YLR++ +E+ LS T+ Y+R L+ ++ +E+ + D +++ Sbjct: 1 METIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +G A S+A +S +RSF + + + +P + +PK + LP ++VD++ LL Sbjct: 61 IDQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALL 120 Query: 124 DIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + N RDR MLE++Y G+R+SEL+ L++++++L G V V GKG KER +P+G Sbjct: 121 ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLG 180 Query: 183 RNAVAWIEHWLD-LRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + ++ +++ +R + + LFL+ GK +S + + K + G+K + + P Sbjct: 181 DAVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE+ DLR VQE+LGH+++STTQ+YTH+ + +Y+ HPRA Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 150/299 (50%), Positives = 199/299 (66%), Gaps = 2/299 (0%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M L D+ +L +L ER LSP TL YQR L ++ +ENGL +R FA Sbjct: 1 MATLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFA 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+GL S+ LS+LRS F +LV + L NPA+GV+AP+ PR LP + D+ Sbjct: 61 AARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAA 120 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL+ +DPLA+RDRA+ E++Y +GLRL+E VGLD+ LDL G V V+GKG+K RR+ Sbjct: 121 RLLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRV 180 Query: 180 PIGRNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 P+G A ++ WL +R ++ A+F+S+ G R+SAR+VQ R A G+ VH Sbjct: 181 PVGGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVH 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFA+H+LESSGDLR VQELLGHA+++TTQ+YTHLDFQHLA VYD AHPRA++G Sbjct: 241 PHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRARKG 299 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 173/302 (57%), Gaps = 8/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS--WQQCDVTMVRN 58 M ++E++ RYL +E+ SP T+ +Y+ +E FA ++ + ++R Sbjct: 1 MRFCRQEIEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRA 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + R + ++A R++ALRSF+ +L + + NP K V PK + LP +D + Sbjct: 61 YLARLKADDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDERE 120 Query: 119 MNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 + LL++ +D L RD A+LE++Y G+R++EL GL +DL S V V GKG+KER Sbjct: 121 VAELLELPADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERI 180 Query: 179 LPIGRNAVAWIEHWL-DLRDLFGSE-----DDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +PIGR A A +E +L D R S+ LF++ G ++ R+V++ ++ Sbjct: 181 VPIGRTAAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLA 240 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + V PH +RH+FATHML + DLR VQE+LGH NLSTTQ+YTH+ + L +VY HP Sbjct: 241 VAKKVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHP 300 Query: 293 RA 294 RA Sbjct: 301 RA 302 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 108/296 (36%), Positives = 174/296 (58%), Gaps = 5/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNFAVR 62 + +E ++ YL+ E+ L+ + + Y+R L F EN S Q + F Sbjct: 1 MQNSIEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAW 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G +S+A LS+++S++ +L+ + EL NP+ + PK R LP+ + ++++++L Sbjct: 61 QLDQGAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKL 120 Query: 123 LDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ PL +RDRAMLE+MYG G+R+SEL+ L ++ L+ +G + MGKG KER +P+ Sbjct: 121 MEQPNPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPV 180 Query: 182 GRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + ++ W++ +L +R+ + LFL+ G+ +S + K + K L V Sbjct: 181 NQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQE+LGHA++STTQIYTHL L VY HPR+ Sbjct: 241 PHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 105/296 (35%), Positives = 166/296 (56%), Gaps = 5/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + ++ ++ Y+ VER LS T+++Y+R L++ + +E + W + + Sbjct: 1 MKDQIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKH 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + G + A L+++RSF +L+ + +P+ + K R LPK + ++++ RL Sbjct: 61 LKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERL 120 Query: 123 LDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD P RD+AMLE++Y G+R+SE++ L + L G + GKG KER +PI Sbjct: 121 LDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPI 180 Query: 182 GRNAVAWIEHWL-DLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A + IE ++ R + DALFL+ GK+IS + K + ++ G+ + Sbjct: 181 GEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR VQE+LGHA++STTQIYTH+ L VY HPRA Sbjct: 241 PHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 179/302 (59%), Gaps = 6/302 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRNFA 60 DLH ++ +LRYL +ER S +TL +Y LE+++ + +E L Q ++ +R + Sbjct: 11 DLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYV 70 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 ++A RL+ LRSFF + + K NPAK + P+ R LP + D + Sbjct: 71 AYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIG 130 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ N + +RDRA+LE +Y AGLR+SELV L++ D ++ + V+GKG KER Sbjct: 131 TLLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIA 190 Query: 180 PIGRNAVAWIEHWLDLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 PIG A + HWL+ R + DALFL++L R+++R+V + ++ ++ GL+ Sbjct: 191 PIGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKK 250 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRH+FATH+L+ DLR VQELLGH +L+TTQIYTH+ + L Y+ AHP A+R Sbjct: 251 TSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHAQR 310 Query: 297 GK 298 K Sbjct: 311 SK 312 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 124/296 (41%), Positives = 191/296 (64%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + +YL YLSVE+ +S TL NY+ L +N+ E + S+ + D ++R++ Sbjct: 1 MQENFNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 KG+ S+A +LSA+RSF+ +L+ + ++ NP S+P+ + LP+ + ++++LL Sbjct: 61 IAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D + P +RD+A +E++Y +GLR+SELV LDI++LDL S ++ V GKGSKER + +G Sbjct: 121 RMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMG 180 Query: 183 RNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ I+ +L+L R L + ALFL+ G R+SAR+ Q+R + + G+ HVHP Sbjct: 181 LPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRH+FATH+L+ DLR VQELLGH+NLSTTQIYTH+ VY ++HP AK Sbjct: 241 HMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAK 296 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 161/288 (55%), Positives = 214/288 (74%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 Y YL +E+Q S TL NYQRQL A+ + S+ G+ +WQ+ + VR +S ++GLGA Sbjct: 15 YWDYLRIEKQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 74 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDP 130 S+ALRL ALR +F +L+ Q ++ NPA G+ APKA + LPKNID + + +LL D ++P Sbjct: 75 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEP 134 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 +RD AM+E+MY +GLRLSEL GLD+ +DL EV ++GKG+KER +PIG A+ + Sbjct: 135 SDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALN 194 Query: 191 HWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHM 250 WL +R+ F +D+A+FL+K G R+S R++Q +WG KQGL +H+HPHKLRHSFATHM Sbjct: 195 RWLAVRNQFKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHM 254 Query: 251 LESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LE+SGDLR VQELLGH+NL+TTQIYTHLDFQHLA +YDAAHPRAKR K Sbjct: 255 LEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKK 302 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 112/296 (37%), Positives = 173/296 (58%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +E +L YL E+ +S T+ +Y+R LE INF + G+ + + + + V Sbjct: 1 MKDKLEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGI-NIKNLKREEWQRYLVAL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 K S+A ++S++RSF +L+ + + N + + PK P +LP+ +D ++ L Sbjct: 60 Y-KKYKIKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFL 118 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 I PL +R+ A+LE Y G+R+SELV L+I+++DLE V GKG KER +P+G Sbjct: 119 KIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLG 178 Query: 183 RNAVAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 AV ++ +L +R LF +D +ALFL+K G+RI+ + V + GL V PH Sbjct: 179 DYAVESLKRYLSVRHLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVSPHT 238 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RHSFATH+L + D+R VQELLGH++++TTQIYTH+ L VY AHP +R Sbjct: 239 FRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRN 294 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 388 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 183/305 (60%), Gaps = 11/305 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT+ + +L ++ +++ S TL Y+ LE NFA ++ + ++R F Sbjct: 1 MTNTQFYITNFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAK----VEPEKVEPIVIRGFI 56 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KG ++A +LS LRSFF +L S+ +K NPA+ VS+ K R LPK + VDD Sbjct: 57 SEQILKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAF 116 Query: 121 RLLDIDINDPLAV-RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +L++ D V RD+A+LE+ Y +G+R+SEL GL+++ LDL+ G + V GKG KER + Sbjct: 117 KLVEAPSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIV 176 Query: 180 PIGRNAVAWIEHWLDLR------DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+G+ A ++ +L +R ++ LF++ G+RIS R V++ ++ G+ Sbjct: 177 PVGQKAKEALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGV 236 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + PH LRH+FA+H+L DLR +QELLGHA+LSTTQIYTH+D +HL VYD +HP Sbjct: 237 LEKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPL 296 Query: 294 AKRGK 298 +K + Sbjct: 297 SKEDE 301 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 110/297 (37%), Positives = 175/297 (58%), Gaps = 5/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ +L YL +ER SP T+ Y+R + F S + D ++ F V Sbjct: 1 MAEELKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVD---LKQFLVDI 57 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 RK + A ++ ALRSF+ +L +K NPA + PK P+ LP+ + VD++ +++ Sbjct: 58 LRKNRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVI 117 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + + P +R+RA+LE+ YGAGLR+ E+ GL + LDL G V V GKG ++R +P+G Sbjct: 118 EGQENSTPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLG 177 Query: 183 RNAVAWIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + A+ ++ +L+ R F + + LFL++ G ++ R ++ ++ K GLN + PH Sbjct: 178 KYALDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHT 237 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 RHS+ATH+LE D+R VQELLGH LSTT+IYTHL + L VY HPR++ K Sbjct: 238 FRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRSREEK 294 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 141/297 (47%), Positives = 191/297 (64%), Gaps = 1/297 (0%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + + Y+ E+Q SP T NY R LE + + G+Q + D VR Sbjct: 7 PFAEPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVAS 66 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R+GL SL LS+LR FF + + + + NPA G++APK P+ LPK +DVD + Sbjct: 67 LHRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQF 126 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + ++ +D + RDRA+LE++Y +GLRL+E+ L++ +D V V GKGSK R LP+G Sbjct: 127 VAVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVG 186 Query: 183 RNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+A ++ WL R+ + + ALF+++ GKRIS R VQ R + ++QG++N VHPH Sbjct: 187 SVAIAALKDWLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHM 246 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LRHSFA+HMLESSGDLR VQELLGHAN+STTQIYTHLDFQHLA VYD AHPRA R K Sbjct: 247 LRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAGRKK 303 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 152/293 (51%), Positives = 200/293 (68%), Gaps = 2/293 (0%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 + VE +L +L +ERQ+S TL Y+R L A+I +AS G + Q D +R F R Sbjct: 29 SAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHR 88 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 +GL SL RLSA RS++ WL+ + +PA + APKAPR LP+ +D D+ RL+++ Sbjct: 89 RGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEV 148 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + PL +RDRA+LE+ Y +GLRLSEL L + LDL+SG V V+GKG K+R +P+G +A Sbjct: 149 PTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHA 208 Query: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 VA + W RD GS +F + G IS R VQ R + ++QG+ HVHPH LRHS Sbjct: 209 VAALRAW--QRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLRHS 266 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 FA+H+LESSGDLRGVQELLGH++++TTQIYTHLDFQHLA VYDAAHPRAKR K Sbjct: 267 FASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRKK 319 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 8/302 (2%) Query: 1 MTD-LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF 59 M + L ER+LRYL VER SP T+LNY+ L A F S G +W + + +R++ Sbjct: 1 MNNVLDPMAERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSY 60 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + R+ ++A R+S+LRSF+ +L+ + NP V PK + LP ++ +M Sbjct: 61 LAQLHREEKARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEM 120 Query: 120 NRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 N LL+ D++ L RDRA+LE +Y G R+SELVGL + LDL + ++GKG KER Sbjct: 121 NHLLELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERI 180 Query: 179 LPIGRNAVAWIEHWLD-LRDLFGSE-----DDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +P+G + + +L R + + D +F++ G ++AR+V++ + Sbjct: 181 VPLGHPCIRAMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMAS 240 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + HV PH +RH+FATH+L+ DLR VQELLGHA+LSTTQIYTH+ +ASVY HP Sbjct: 241 IQKHVSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHP 300 Query: 293 RA 294 RA Sbjct: 301 RA 302 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 166/295 (56%), Positives = 221/295 (74%), Gaps = 1/295 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L ++++ YL E+ LS T NY++QLE + GL++W Q D VR A + Sbjct: 13 LRKPLDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKG 72 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+G+ A+S+A RLS+LRSFFD+L+ + L ANPAKGVSAP+ R LPKN+DVD++N+LL Sbjct: 73 MREGMKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLL 132 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 +++ +DPLA+RDRA++E+MYGAGLRL+ELV +D++ + L SGE+ V+GKG+KER++P Sbjct: 133 EVNEDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAG 192 Query: 184 NAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 AV W+ WL +R + ALF+SKLG RIS R+VQKR AEWG KQ + +H+ PHKL Sbjct: 193 MAVEWVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKL 252 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RHSFATH+LESS +LR VQELLGH N+STTQIYTHLDFQHLA VYD AHPRA++ Sbjct: 253 RHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARKK 307 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 114/298 (38%), Positives = 176/298 (59%), Gaps = 7/298 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 L ++ YLRY +ER LS T+ Y++ LE + F + G+ SW + + V F Sbjct: 4 NKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSW-PTEASDVDAFLA 62 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R +S++ +S++R F+ WL QN K NP + PK R LP ++ ++N Sbjct: 63 RQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEIND 122 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL DI L +RDRA+LE +Y G+R+SEL+ L+++ L + G V V+GKGSKER +P Sbjct: 123 LLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIP 182 Query: 181 IGRNAVAWIEHW-LDLRDLF----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 I A+ WI+ + ++RD G D+ +FL+ K+++ + + + ++ G+ Sbjct: 183 ISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGITK 242 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH LRH+FATH+LE+ DLR VQE+LGH+++STTQIYT+L +H+ VY HPR Sbjct: 243 DVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPR 300 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 383 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 94/295 (31%), Positives = 174/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + V +L +L +++LS TL +Y+R +E I + + +Q+ + T V + + Sbjct: 3 MEELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHL 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++KG ++++ L+++RSF+ +L + + +P + + +PK + LP+ + ++ LL Sbjct: 63 QKKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLL 122 Query: 124 DIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + +D RD+AMLE++Y G+R+SEL+ LD+ ++LE + KG++ER +PIG Sbjct: 123 EQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCN-KGARERIVPIG 181 Query: 183 RNAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +V ++ +L R+L ++ ALF++ GKR++ + K ++ + +N + P Sbjct: 182 SVSVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITP 241 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+LE+ DLR +QE+LGH+++S+TQIY L + +Y HPRA Sbjct: 242 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 174/298 (58%), Gaps = 7/298 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M ++++L YL E+ LS T+ +Y+ L+ + + +E + C + + Sbjct: 1 MEQ-KEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVL-NCKKDDIVQYL 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + + K + S+A LS+L+ FF +++ + + +P +G+ +PK LPK +++D++ Sbjct: 59 LNLKEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVK 118 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 RLL + + +RD AMLE+MY +GLR+SELV L + ++ E+G + V GKG KER +P Sbjct: 119 RLLSVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVP 178 Query: 181 IGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 I + ++ I+++L LR + + + +FL+ G+ ++ + + G G+ +V Sbjct: 179 IAQRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGV--NV 236 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH +RHSFATH+LE DLR +Q++LGH+++STTQIYT + L Y HPRAK Sbjct: 237 TPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRAK 294 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 177/310 (57%), Gaps = 16/310 (5%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW--QQCDVTMVRNFAV 61 +H + ++LRYL VER + +T +Y+ L ++ ++ ++ + + +R + Sbjct: 1 MHAAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 G S+A RL++LR+F+ + + +NPAK + P+ R LP + D++ + Sbjct: 61 ALHEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGK 120 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL+ +DP +RDRAMLE +Y AGLR+SELVG++ + LDL+ G V + GKGSKER P Sbjct: 121 LLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAP 180 Query: 181 IGRNAVAWIEHWLDLRDL-------------FGSEDDALFLSKLGKRISARNVQKRFAEW 227 +G A+ I+ WL R L +F +K GKR++ R+V + ++ Sbjct: 181 LGSFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKY 240 Query: 228 GIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVY 287 GL+ PH LRH+FATH+L+ D+R VQELLGH +L TTQIYTH+ L +VY Sbjct: 241 LKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVY 300 Query: 288 DAAHPRAKRG 297 + AHPRA+ Sbjct: 301 ERAHPRARNK 310 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 179/301 (59%), Gaps = 6/301 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +++ +L Y+ VER+ SP T+ Y+R ++ ++ +E + SW V VR + Sbjct: 2 MKNEMQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVL 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+ +S++ LS+LRSF+ +LV + +++NP VS K LP+ D++ + + Sbjct: 62 HRENYNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFI 121 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + ID N L R++A++EV+Y G+R+SEL L ++ LDL++ + V+GKGSKER +PIG Sbjct: 122 NSIDGNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIG 181 Query: 183 RNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A +E +L+ R +++ +F++ LG ++ V+ + + GL + Sbjct: 182 DFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKI 241 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 HPH LRH+FATH+L + D+R VQELLGH +LS+TQIYTH+ + L Y PR+K G Sbjct: 242 HPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRSKAG 301 Query: 298 K 298 K Sbjct: 302 K 302 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 177/295 (60%), Gaps = 2/295 (0%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MTD + ++ Y+ VE+ LS T+L Y+ + INFA + + S + + + +F Sbjct: 1 MTDCKEALNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRI-SLENFEHNDITDFL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + +GL S+ + +LR F+ +L S++ K NP ++ P P +LP + D+++ Sbjct: 60 WEMKTEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVD 119 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ I+ +D + +R++AMLE++Y AGLR+SEL+ L ++LE + ++GKGSKER + Sbjct: 120 LLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G A +I +L R + +D +F+S+LGK++S ++ G+N ++ P Sbjct: 180 PFGNKAKFFISIYLKKRRPCLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA+H+L+ D+R VQE+LGHA+++TTQIYTHLD + + HPR Sbjct: 240 HTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPRG 294 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 166/295 (56%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++ ++ YL VE + T+ YQ L+ I F + + ++ +F + Sbjct: 1 MDELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISE 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G S+ + ++R F+ +L+ + +L+ NP + +PK + LP + + + LL Sbjct: 61 KHRGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLL 120 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D+ L +R++A+LE++Y G R+SE+ + + ++LE G + GKGSKER +P+G Sbjct: 121 SAADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLG 180 Query: 183 RNAVAWIEHWLD-LRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + A I+ +L +R LFLS+ G+ + N+ +K G+ + P Sbjct: 181 KKASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HKLRHSFATH+LE+ DLR VQE+LGH ++STTQIYTH++ QHL +++ HPRA Sbjct: 241 HKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 171/299 (57%), Gaps = 5/299 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFAVR 62 + ++ + YL+ E LS T+ Y R L+ +F + + L+ + + Sbjct: 1 MTYLIKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKS 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++KGL A +++ +L++++SF +L+ + E+ + ++ PK + LP + VD++ + Sbjct: 61 IKKKGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISI 120 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ ID + L +R+ A+LE++YG+GLR+SEL+ + +K + ++ V V GKGSKER +PI Sbjct: 121 LEVIDKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPI 180 Query: 182 GRNAVAWIEHWL-DLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGL-NNHVH 238 A+ I ++L RD + D LF++ GK +S K + + L V Sbjct: 181 SDMAIIAIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVS 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFATH+LE+ DLR +Q LLGH ++STTQIYTH+ L VY+ HPRAK Sbjct: 241 PHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKEN 299 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 110/302 (36%), Positives = 172/302 (56%), Gaps = 9/302 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +ER+L+Y+ S T YQR ++ I + E + S++ D +V N+ Sbjct: 1 MEDLLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFL 60 Query: 64 RRKG------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 R KG + ++A +LS+LRSF+ +L + NP PK + +P+ + D Sbjct: 61 RDKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYD 120 Query: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 ++ L+ D+N +RDR M E+MY GLR+SE V L + +D + + GKG KE Sbjct: 121 EIEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKE 180 Query: 177 RRLPIGRNAVAWIEHWLD-LRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 R +P A + ++ +RD++ S++ ALF+++ GK+++ R VQ + K L+ Sbjct: 181 RLVPFYDLAKELLVSYIKDVRDVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLH 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HVHPH RHSFATH+L++ DLR VQELLGH++LSTTQIY H+ + L + Y+ AHPRA Sbjct: 241 VHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRA 300 Query: 295 KR 296 K Sbjct: 301 KE 302 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 175/293 (59%), Gaps = 6/293 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 VE++L + +ER LS TL++Y+ L ++ + +N + ++ ++++ Sbjct: 29 LVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYR-LDFISLSGLQDYQGWLADA 87 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 S A LSA+R F +L + +P+ + +PK P+ LPK++ + ++ LL+ Sbjct: 88 DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAP 147 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D NDP+ +RD+AMLE++Y GLR++ELV L ++++ L G V V+GKG KER +P+G NA Sbjct: 148 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 207 Query: 186 VAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV-HPHK 241 V WIE +++ R ++ D +F SK K+++ + R + + G++ + PH Sbjct: 208 VDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSPHV 267 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L ++ HPRA Sbjct: 268 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 111/292 (38%), Positives = 170/292 (58%), Gaps = 4/292 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 ++ + L +E SP T+ Y+R + G+ + +R F + Sbjct: 21 HLQAFEDALQIEEGASPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDL 80 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 GL +S+ +SALR++F +V++ + +P + + +P+ R LP+ + VD++ RLL Sbjct: 81 GLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAP 140 Query: 127 I-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 ++ LA RDRAMLE+ YGAGLR+SE +G+ +K + LE V V+GKG+KER +PIGR+A Sbjct: 141 GLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSA 200 Query: 186 VAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + + +L R + G LFL+ G +S K ++ G+ V PH L Sbjct: 201 IGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIEKPVSPHTL 260 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE DLR VQE+LGHA+++TTQIYTH+D ++L SV+ HPRA Sbjct: 261 RHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 180/309 (58%), Gaps = 15/309 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-------LQSWQQCDVTMV 56 + ++ + RY+ +ER LS T NY L + EN ++WQ D MV Sbjct: 1 MDELIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMV 60 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R F R+ + ++A +L++LR+FF +L + +++ NP + VS P+ +++P + V Sbjct: 61 RAFLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSV 120 Query: 117 DDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 D++ LL++ D +RDRA+LE+ Y +G+R+SEL G++ + +D G + + GKG K Sbjct: 121 DEIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKK 180 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSEDDA-------LFLSKLGKRISARNVQKRFAEWG 228 ER +PIG+ A ++ ++ + + A LF+++ R+SAR+V + +++ Sbjct: 181 ERIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYV 240 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 GL + PH LRHSFATH++++ DLR +QELLGH +LSTTQ YT + L +VYD Sbjct: 241 SMSGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYD 300 Query: 289 AAHPRAKRG 297 AHP+A+ G Sbjct: 301 RAHPKARGG 309 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 92/295 (31%), Positives = 171/295 (57%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +VE+++ +L +++LS TL +Y+R +E I + E + + + T V + + Sbjct: 1 MEANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++KG ++++ L+++RSF+ +L + +P + +PK + LP+ + ++ LL Sbjct: 61 QKKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLL 120 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D D +RD+AMLE++Y G+R+SEL+ L++ ++ + G + KG++ER +PIG Sbjct: 121 DQPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCN-KGTRERTIPIG 179 Query: 183 RNAVAWIEHWLD-LRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 + A + +L+ R+ + ALF++ GKR++ + K + + +N + P Sbjct: 180 SISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+LE+ DLR +QE+LGH+++S+TQIY + + VY HPRA Sbjct: 240 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 6/299 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T + ++ ++RY+ VE+ S T+ +Y +E +F E+ ++ VR++ Sbjct: 23 TKTNDSIQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLT 82 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 K S+A ++S++RS F +L+ + EL N PK LP + ++M+ Sbjct: 83 FLYDKAYARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDE 142 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + N PL RDRA+LE++Y G+R+ E LD+ +DL G +V GKG+KER +P Sbjct: 143 LFKAFEGNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVP 202 Query: 181 IGRNAVAWIEHWLD-LRDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 IG A + +++ R + LFL+ G ++ R++++ A+ + + Sbjct: 203 IGSFACDALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQK 262 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+ PH LRHSFATH+L + DLR VQELLGH +LSTTQ+YTH+ L VY HPRA Sbjct: 263 HIRPHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 175/303 (57%), Gaps = 8/303 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS--WQQCDVTMVRNFA 60 +E +L YL ERQ SP T+ Y+ +E F + Q D+ MVR + Sbjct: 5 TFGEALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYL 64 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + G +S+ +L+ALR+F+ +L+ +++++P +S P+ + LP + +M Sbjct: 65 GWLNQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEME 124 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +LL I PL +RDRA+LE +Y +G+R++ELVG+D LDL +G V+GKG +ER +P Sbjct: 125 KLLSIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVP 184 Query: 181 IGRNAVAWIEHWL-DLRDLFG-----SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +GR AV +E++L R E ALFL+ LG R++ R V++R + + K L Sbjct: 185 LGRYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALR 244 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH +RH+FATH+LE DLR VQELLGH L+TTQIYTH+ L VY HPRA Sbjct: 245 RGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRA 304 Query: 295 KRG 297 R Sbjct: 305 SRD 307 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 8/300 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 +E +L YL++ER S T +Y L + + E G++ ++ +R F Sbjct: 6 EPWRKTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVK-PEEAAPGDIRKFIQ 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 GL A+S+A +SA+RSF +L+++ NPA+ + PK R+LP + +++M Sbjct: 65 ELHEIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMAT 124 Query: 122 LLDID----INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 LLD +RD+AMLE +Y G+R+SEL+GL +L ++ G V V GKGSKER Sbjct: 125 LLDAPLKRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKER 184 Query: 178 RLPIGRNAVAWIEHWLDL-RDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P+G+ A++W++ +LD R S +FL+ G +S E + G+ Sbjct: 185 LVPVGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIE 244 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH RHSFATH+LE DLR VQE+LGH+++ TQIYTH+D + V+ HPR Sbjct: 245 KPISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPRG 304 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 167/297 (56%), Gaps = 5/297 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L +YL YL +R + T+ +Y+RQ++ F E + + M+R + Sbjct: 5 TTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYLT 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + K L ++ +LSALRSFF++L+ + + NP + + K + P + +++ Sbjct: 65 KLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILG 124 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD I+ D L +R++AM+E+MY +GLR SE+V L + ++D +++ GKG+K+R +P Sbjct: 125 LLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYVP 184 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 A W+ ++ + R+ +++ +F++K G ++ R V+ Sbjct: 185 FHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDSTKK 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 +HPH +RHSFATH+L + D+R VQELLGH NLSTTQIYTH+ HL VY AHPR Sbjct: 245 IHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPR 301 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 177/303 (58%), Gaps = 13/303 (4%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ--------SWQQCDVTMVRN 58 ++ +L L+ ER+ SP T L Y + L ++ +E+GLQ ++ D +R Sbjct: 14 WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + +K +++A +LS+LRSF+ +L + + NPA+ V PK + + ++ VD+ Sbjct: 74 YLGFLHKKNEK-STMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDE 132 Query: 119 MNRLLDIDINDPL-AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 LLD ++D L RDRAM E +Y G+R+SEL GL++ ++ + V+GKG KER Sbjct: 133 AFALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKER 192 Query: 178 RLPIGRNAVAWIEHW---LDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P+G A+ I+ + L + + +A+FL+K G R++ R++++ + GLN Sbjct: 193 IVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLN 252 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FATHML++ DLR VQELLGHA++STT YTH+ L + YD AHPR Sbjct: 253 RPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPRG 312 Query: 295 KRG 297 ++ Sbjct: 313 EKS 315 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 188/294 (63%), Positives = 228/294 (77%), Gaps = 1/294 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L +ER+ YL ER+LS T NY+RQL I E + +WQQ D VR A + Sbjct: 6 LEQPLERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKG 65 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R GL A+SLA+RLSALRSFFD+LV QN LKANPAKGV+AP+ R LPKN+DVD+MN+LL Sbjct: 66 MRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLL 125 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D++ +DPLA+RDRAM+E+MYGAGLRL+ELVG+D++H+ L G++ V+GKG KER +P Sbjct: 126 DVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSG 185 Query: 184 NAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A W+ WL LRD +E+ ALF+SKLG RIS RNVQKR AEWG KQ +++H++PHKL Sbjct: 186 LAREWVAKWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKL 245 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFATHMLESSGDLR VQELLGHANLSTTQIYTHLDFQHLA VYD AHPRAK+ Sbjct: 246 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 299 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/340 (34%), Positives = 172/340 (50%), Gaps = 44/340 (12%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE------------------- 42 L +V +L LSVE+ S TL +Y+ L + + Sbjct: 11 DSLGPEVAGFLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRH 70 Query: 43 ------------NGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQ 90 GL + + +R++ +R+ ++A +LS LRSF+ +LV Sbjct: 71 DFAAQQEEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRA 130 Query: 91 NELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRL 149 + + NP GV PK R LP +D +++ LL D + PL +RDRA+LE++Y GLR+ Sbjct: 131 DLVPTNPVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRV 190 Query: 150 SELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD------------LRD 197 ELV L+ +D G V V GKG KER +P+G A+ + H+L Sbjct: 191 GELVALNRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQ 250 Query: 198 LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDL 257 LFL+KLG R+S R+V++ + + L+ + PHK+RH+FATHML DL Sbjct: 251 SLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADL 310 Query: 258 RGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 R VQE+LGHA+LSTTQIYTH+ Q L + Y AHPR +R Sbjct: 311 RAVQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHPRQRRA 350 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 374 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 117/301 (38%), Positives = 174/301 (57%), Gaps = 8/301 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT L +E++ +L E+ SP T+ NY L + E S +R + Sbjct: 1 MTSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYL 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 AS A RL++++SF+ +LV Q L A+PAK V +PK P+ LPK + V+++ Sbjct: 61 GTLSTDH-APASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVF 119 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +LD D+ L +RDRA+LE++YG GLR+SEL GLD+ +D V VMGKGSKER + Sbjct: 120 AILDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFG------SEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+ ++ +E +L R +A+FL+ G R++ R++ + + +K L Sbjct: 180 PVNAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCAL 239 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH +RHSFATH+L D+R +QELLGH++LSTTQ YT + ++ L VYD+AHPR Sbjct: 240 TRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHPR 299 Query: 294 A 294 A Sbjct: 300 A 300 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 176/317 (55%), Gaps = 28/317 (8%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +++YL YL+VER LSP T +Y+R L F + G ++ C+ + F ++ + Sbjct: 6 EAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRG-KNIIACEGNDLFLFLLQEK 64 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL- 123 +G A +LA L+ LR FF +L+ + + +P + +S PK +HLP + +++L+ Sbjct: 65 NQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMG 124 Query: 124 -----------------DIDINDPLA------VRDRAMLEVMYGAGLRLSELVGLDIKHL 160 +D +R+ AM+EV+YG GLR+SELVGL + + Sbjct: 125 EGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDI 184 Query: 161 DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLD---LRDLFGSEDDALFLSKLGKRISA 217 E+ + GKG+KER +PIG A+ ++++L+ R + + LFL+ G ++ Sbjct: 185 IFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTR 244 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 + + +W G+ +++PHK RHSFATH+L+ DLR VQE+LGHA+++TTQIYTH Sbjct: 245 QGIWDILKKWAQTHGVQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTH 304 Query: 278 LDFQHLASVYDAAHPRA 294 L Q L V+ AHPRA Sbjct: 305 LSRQRLLEVFRKAHPRA 321 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 174/299 (58%), Gaps = 7/299 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M D VE++L + +ER L+ TL +Y+ L ++ + N + ++ ++ + Sbjct: 9 MQDF-GYVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYR-LDFISLSGLQQYQ 66 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + S A LSA+R F +L + +P+ + +PK P+ LPK+I + ++ Sbjct: 67 SYLVDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVD 126 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LLD D NDP+ +RD+AMLE++Y GLR++ELV L ++++ L G V V GKG KER + Sbjct: 127 ALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLV 186 Query: 180 PIGRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLN-N 235 P+G NA+ WIE ++ R E D +F SK ++++ + R + + G++ + Sbjct: 187 PMGENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTD 246 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H+ PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L ++ HPRA Sbjct: 247 HLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 166/301 (55%), Gaps = 7/301 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT+ V ++ YL +E+ S +T+ Y +E + F + G+ +++ R + Sbjct: 1 MTNKQRLVHLFIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYL 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + KGL +++ ++SALRSF+ +L+ + +K NP VS PK + +P + +++ Sbjct: 61 TEAYEKGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELK 120 Query: 121 RLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L D++ PL R++A+LE++Y G+R+SEL L LDL V V GKGSK+R + Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 180 PIGRNAVAWIEHWLDLRDLFGSE------DDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P G A + +L+ L D +FL++ G ++ R V+ E K Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H+HPH LRH+FATH+L DLR VQELLGH+NLS+TQ+YTH+ L Y + HPR Sbjct: 241 TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPR 300 Query: 294 A 294 A Sbjct: 301 A 301 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 123/300 (41%), Positives = 165/300 (55%), Gaps = 6/300 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D YL YLSVER S +T+ +Y L I+F E G+ V + Sbjct: 10 PFLPDRNDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYD 69 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 RR+G +S+ LSAL+ F +LV + K NPA VS PK P LP + V ++N L Sbjct: 70 LRRRGYADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNEL 129 Query: 123 LDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD D PL +RD+A LE++YG GLR SEL+ LD+ + G + VMGKGS+ER +PI Sbjct: 130 LDQPFKDGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPI 189 Query: 182 GRNAVAWIEHWLD-LRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G +A + +L+ R A+ L+ G R+S + + G G + Sbjct: 190 GGSAQRVLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIG-RPDL 248 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 HPH LRHSFATHMLE DLR +QE+LGH+++STTQIY H+D H+ Y AAHPRA Sbjct: 249 HPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRAHLK 308 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 112/294 (38%), Positives = 169/294 (57%), Gaps = 8/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSRRKG 67 E + YL VE+ SP+T+ NY + F ++ W Q V +R++ + + Sbjct: 18 EDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRD 77 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD-ID 126 L ++A R+S+LRSF+ +L + +K NP V PK + LP ++ ++N LL D Sbjct: 78 LSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPD 137 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 L RDRA+LE +Y G R+SELVGL + +DL + ++GKG KER +P+G V Sbjct: 138 CTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCV 197 Query: 187 AWIEHWLDL-RDLFGSEDDA-----LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +E +L R + A +F++ G+ +SAR+V++ ++ L HV PH Sbjct: 198 AAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPH 257 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +RH+FATH+L+ DLR VQELLGH +LSTTQIYTH+ + L +VY+ HPRA Sbjct: 258 TIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 166/298 (55%), Gaps = 10/298 (3%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE--NGLQSWQQCDVTMVRNFAVRSR 64 ++RYLRYL+ E + T Y L +I + +G+ + +R R Sbjct: 43 WIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLY 102 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G+ +SLA +L+A R FF +LV + +L ++P K + +PK R LPK + +++ LL Sbjct: 103 AVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLS 162 Query: 125 IDI---NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++PLA+R+ AM+E+ Y +GLR++EL GLD+ +D G V V+GKG KER +P+ Sbjct: 163 AAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPV 222 Query: 182 GRNAVAWIEHWLDL-RDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 G A+ I +L R ALFL+ G+R+S R Q + L Sbjct: 223 GEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALERG 282 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FATH+L+ DLR VQE+LGHA LSTTQIYTH+ + L +Y HPRA Sbjct: 283 ISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 170/295 (57%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++RY+ +L++ER L+ +L +Y L +F N + + Q D ++ + V Sbjct: 1 MDRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 KGL S A L A+R F+ +L +N ++NP + + PKA LP+ + D + LL Sbjct: 61 EAKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALL 120 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + D +R+ AMLE++YGAGLR+SELVGL + +DL + V + GKGS+ER +P G Sbjct: 121 EMPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFG 180 Query: 183 RNAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +A WL+ R ++ LF+++ G ++ + K ++ + G++ V P Sbjct: 181 SHARQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE DLR VQ +LGHA++++TQIYTH+ Q+L ++ HPR Sbjct: 241 HTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPRG 295 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 167/295 (56%), Gaps = 6/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 +H + ++ YL VER L+ T ++YQ+ L + + S+ ++ + D +++ F Sbjct: 1 MHGLIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPE-DFGVIQAFLKHQ 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 AS++ +SALR F+ +L+ + +K++P + PK +HLP + +++ L+ Sbjct: 60 NDTK-APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALM 118 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 PL +RDRA+ E+MY GLR+SE+VGL + L L + V GKG KER +PI Sbjct: 119 AKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPIS 178 Query: 183 RNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A W+ +L R + + A+F++ G ++ + + K + G+ V P Sbjct: 179 PQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFAT +LE+ DLR VQELLGH+++STTQIYTHL QHL +VY HPR Sbjct: 239 HTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG 293 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 114/298 (38%), Positives = 169/298 (56%), Gaps = 5/298 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRNFAVR 62 V +L YL +R SP T+ Y LE F G + + + + Sbjct: 9 PDPVALFLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLAD 68 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R+GL +S+ +LSALR+F+ +L + + +P ++ PK P+ PK ++VD L Sbjct: 69 LHRRGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHL 128 Query: 123 LDIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ +I DP +RD A+LEV+YG+GLR+SE +GLD H+DL+ V V+GKG KER +P+ Sbjct: 129 VETEITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPL 188 Query: 182 GRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A + +++ R F + A+FL K G R+S + + E ++ G + P Sbjct: 189 TGPAAERLARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISP 248 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H LRHSFA+HML++ DLR VQELLGH+ +STTQ YTHLD + VYDAAHP A + Sbjct: 249 HTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAAKK 306 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 138/295 (46%), Positives = 197/295 (66%), Gaps = 7/295 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 V +L +L+ ER+LSP T+ YQR L W V +R+ A R+G Sbjct: 12 VNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGSQ---PWDTLTVHDMRSLAASLHRQG 68 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-- 125 ++ LS LR+FF +L+ + + NPA + APK+ + LPK +DVD ++ LLD Sbjct: 69 KSGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGT 128 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 ++PLA+RD+A++E++Y GLRL+EL+ L++ +DL ++ V GKG+K R+LP+G+ A Sbjct: 129 SNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPA 188 Query: 186 VAWIEHWLDLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + + WL +R + D ALF+SK G+R+S +VQ+R +++GL+ H+HPHKLR Sbjct: 189 LTAVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLR 248 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HSFATH+LESSGDLR VQELLGHA+L+TTQ+YTHLDFQHLA VYD AHPRA+R K Sbjct: 249 HSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRRK 303 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 98/289 (33%), Positives = 162/289 (56%), Gaps = 8/289 (2%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 +L + +E+ LSP ++ Y L + F + V +R + + GL Sbjct: 18 AFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQEPP----GVPEIRQYIDHLYQTGLS 73 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI-N 128 S+ L+ LR+F+ +L+ + ++ +P + + P+ + +PK ++++++ R++ Sbjct: 74 NRSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLA 133 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 PL +RDRAM+EV+Y +GLR+SEL L I LDLE + GKG+K+R +P+G+ AV Sbjct: 134 KPLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLA 193 Query: 189 IEHWLDL-RDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 + +L+ R LF++ G ++ + K A +G K G+ + + PH LRHS Sbjct: 194 VRAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHS 253 Query: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 FATH+LE DLR VQ +LGHA++STTQIYTH+ L + + HPRA Sbjct: 254 FATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 156/310 (50%), Gaps = 17/310 (5%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T + V YL+++ VER L+ TL Y+R L + + G Q V F Sbjct: 51 TKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPGDITRHHVTGFVR 110 Query: 62 RSRRKG-----LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 LG S A + A+R + + ++PA V P A + LPK I V Sbjct: 111 ALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAITV 170 Query: 117 DDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG-------EVW 168 D++ R+L+ + +RDRA+LE +Y G R+SE VGLD+ + L V Sbjct: 171 DEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAIVR 230 Query: 169 VMGKGSKERRLPIGRNAVAWIEHWL-DLRDLFGSE---DDALFLSKLGKRISARNVQKRF 224 + GKGSKER +P+G +E +L R L ++ ALFL+ G RIS ++ Sbjct: 231 LFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTIL 290 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 K + V PH LRHSFATH+LE D+R VQELLGHA+++TTQ+YT + L Sbjct: 291 KVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLR 350 Query: 285 SVYDAAHPRA 294 VY AAHPRA Sbjct: 351 EVYAAAHPRA 360 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 127/332 (38%), Positives = 178/332 (53%), Gaps = 44/332 (13%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ------------------- 46 ++ +LR+L VE+ S T+ +YQR L + A Sbjct: 7 RHIDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAP 66 Query: 47 ----------SWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKAN 96 Q D T VR F + +S+A +LSALRSFF +L + + Sbjct: 67 LPAEDPAAELDVAQLDATRVRAFVYSLHGRNKS-SSVARKLSALRSFFRFLRKNGIINDD 125 Query: 97 PAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGL 155 PA ++APK +LP + VD++ LL++ D A RDRA+LE++Y GLR+SEL GL Sbjct: 126 PAAAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGL 185 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED------------ 203 D+ LDL G V V+GKG+KER +P+G AVA IE +L R + + Sbjct: 186 DLAQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARG 245 Query: 204 -DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQE 262 D L ++ G R+++R++++ + + G+ V PH LRHSFATH+LE DLR VQE Sbjct: 246 ADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQE 305 Query: 263 LLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LLGHA+LSTTQ YTHL+ HL +VYD AHP A Sbjct: 306 LLGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 115/298 (38%), Positives = 167/298 (56%), Gaps = 5/298 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 L VE YL++L VER LSP TL Y L +++ S G++ Q + F Sbjct: 5 EALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLGFLR 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 GL A S A R A+R F WL S+ ++ +P +G++ PKA LP+ + +++ R Sbjct: 65 SLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVR 124 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L+ + PL +RD A+LE MY G R+SE L++ L L+ G V + GKGSK+R +P Sbjct: 125 LIAAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQRMVP 184 Query: 181 IGRNAVAWIEHWLDL-RDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G A+ + WL+ R + +F++K G R+S + R + + G+ Sbjct: 185 LGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGITRD 244 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PHKLRHSFATH++E DLR VQ LLGHA++STTQ+YTHL H+ YD HPRA Sbjct: 245 ISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 118/295 (40%), Positives = 170/295 (57%), Gaps = 3/295 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL T V+ YL +L VER L+P+TL Y L ++ A +G+ + + D +++ + V Sbjct: 29 DLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVA 88 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + G+ A+S A LSA+R F +L+ + ++ +P V P+ R LPK + D++ L Sbjct: 89 LGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALL 148 Query: 123 LDIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ +RDRAML VMY AGLR+SE+V L + +D G V +GKG K R +P+ Sbjct: 149 IEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPL 208 Query: 182 GRNAVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G A+A I+ +L+LR LFLS G ++ + V K + G+ P Sbjct: 209 GEPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSP 268 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HKLRHSFATH+LE DLR VQ LLGHAN+ TT+IYTHL H+ + Y AHPRA Sbjct: 269 HKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 103/300 (34%), Positives = 166/300 (55%), Gaps = 5/300 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + V +L+++ E+ S T+ NY R L + + ++ + Q D +R F Sbjct: 11 QIDKAVSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFVAM 70 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 KGL +++ +++ L+SFF ++ +N NPA+ + PK + K ++D + L Sbjct: 71 LFDKGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIAL 130 Query: 123 LDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD D P +RD + E+MYG G+R+SELVGL++ +D + V GKG KER +PI Sbjct: 131 LDAPDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIVPI 190 Query: 182 GRNAVAWIEHWLD----LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 + I +LD + + + +++A+F++K G R++ R+V++ ++ GL Sbjct: 191 ADMHIEMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPMDF 250 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH RHS+ATH+LE DLR +Q LLGH +L+TTQ YTHL+ L VYDA HP A Sbjct: 251 SPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFASGK 310 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 175/296 (59%), Gaps = 6/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNFAVR 62 + ++ Y+ L VER L+ +L +Y+R L+ + E L++ + + +R+F + Sbjct: 1 MENFLQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRK 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +GL A S+ +S++R++ ++L ++ +K NPA+ + PK PR LP + + +++++ Sbjct: 61 LSNRGLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKI 120 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L I N P+A RD A+ E+MY GLR++EL + +S + V GKGSK+R +PI Sbjct: 121 LGIIPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPI 180 Query: 182 GRNAVAWIEHWLD-LRDLFGSEDDAL---FLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G A ++++L+ R+ ++ + FLS+ G++++ + +W + V Sbjct: 181 GPIARENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEV 240 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH LRHSFATH+LE DLR VQE+LGH +++TTQ+YTHLD +HL V+ HPR Sbjct: 241 SPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 369 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 170/311 (54%), Gaps = 18/311 (5%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF- 59 M +L V R+L +L+ +R SP T+ Y+ L +F + V + Sbjct: 1 MDELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRL 60 Query: 60 --------AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 + +R G +S+ +L+A+R+FF WLV +L+ NPA+ ++ PK + LP Sbjct: 61 YLASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLP 120 Query: 112 KNIDVDDMNRLLDIDIND----PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 ++++D L++ + P RD A+LE++Y +GLR+SEL GL + LD +G V Sbjct: 121 FHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMV 180 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEW 227 V GKG KER +P+G A+ +E +L R +D LFL G RI+ R V + W Sbjct: 181 RVQGKGGKERIVPVGSAALEALEQYLAGRGQLA-DDAPLFLGCRGARINRRTVAQLVKRW 239 Query: 228 GIKQGLN--NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLAS 285 G+ + PH LRH+FATHMLE DLR +QELLGH++LSTTQ YTH+ L Sbjct: 240 A--SGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLE 297 Query: 286 VYDAAHPRAKR 296 VYD AHPRA+ Sbjct: 298 VYDKAHPRARE 308 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 165/296 (55%), Gaps = 4/296 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 D+E +L Y+++ER L+ T+ +Y+R L+ + G + W+ + Sbjct: 18 FADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSL 77 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ASLA +LSALRS +LV + + +S PKA R +P + +++ RLL Sbjct: 78 SSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLL 137 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D A+RDRA+LE+ Y +GLR+SEL GL ++ +DLE G + V GKG+KER +PIG Sbjct: 138 AAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKERVVPIG 197 Query: 183 RNAVAWIEHWLDL-RDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A+ + +L R F LFL+K G +S + ++ + GL +V P Sbjct: 198 GKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGLTKNVKP 257 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H LRHSFATH+L DLR +QE+LGHA++STTQIYT ++ Q L +D HPR + Sbjct: 258 HGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPRNR 313 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 368 bits (947), Expect = e-101, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 168/299 (56%), Gaps = 8/299 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL ++E Y+ YL ER SP TL +Y R L + E + VR++ Sbjct: 4 DLKREIENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEK---DLDFTNKRNVRSYIQF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +K ++ ++ +LRSFF++L++ ++ + + PKA + LP+ + VD++ +L Sbjct: 61 IAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKL 120 Query: 123 LDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ +D + +RDRA++E +Y G+R+SELVG++ + ++ GE+ V GK +KER + + Sbjct: 121 LNSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIV 180 Query: 182 GRNAVAWIEHWLDL-RDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G + ++ + D R + A FL+ G RIS R ++ ++ N V P Sbjct: 181 GEETLKILQLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTKD--FNKKVSP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 H LRH+FATH+LE DLR VQELLGH +STTQIYTHL + + Y +HPRA + + Sbjct: 239 HTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAIKKE 297 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 169/298 (56%), Gaps = 9/298 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + ++ ++ YL+VE L+ T +Y R L + + ++ + + Sbjct: 5 NKIEDEIALFMDYLTVEMGLARNTRESYGRDLRLFAVWVKK----PIKEISRDDILTYMS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + + S A +L+AL++FF ++ ++ ++ +P + V + LPK + VD++NR Sbjct: 61 VLKAQNYAVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNR 120 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + + P RDR MLEVMY G+R+SEL+ L + ++L S V GKG+KER +P Sbjct: 121 LFEAPDLDTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIP 180 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G A+ +++ +L +R F E+ LFL+ G ++ + + +G+K + Sbjct: 181 LGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAKS 240 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATHML++ DLR VQELLGH+++STTQIYTHL L ++YD +HPRA Sbjct: 241 LTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 118/297 (39%), Positives = 171/297 (57%), Gaps = 3/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L ++R+L +L VER L+ TL Y L + F E G + D + V Sbjct: 24 LAPVMDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCL-LAEVDEQTLFMHVVDL 82 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 RR+G+ +LA L+ LR FF + V + EL+A+PA + PK R+LP + D+M +L Sbjct: 83 RRRGMAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATIL 142 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D++D L RDR MLE+MY AGLR+SEL L D ++G V V GKG+KER +P+ Sbjct: 143 ARPDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVH 202 Query: 183 RNAVAWIEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + A + +L D R F + A+FL++ GK +S + V K + G++ + PH Sbjct: 203 HVSCALVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHT 262 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 RHSFATH+LE DLR VQ LLGHA++S T+IYTH+ L +++A HPR +R + Sbjct: 263 FRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRRPR 319 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 7/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++ +L YL VE+ + T+ Y R L + F E + V F + Sbjct: 1 MDRYLDLFLNYLLVEKGAAANTVSAYSRDLNRYLLFLGER---EPDGIRPSDVTGFLAKL 57 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G+ S A LSALR +L+ + + NP + APK R LP + ++ LL Sbjct: 58 KGEGIAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALL 117 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++ +RD+AMLE++Y GLR+SELVGL + ++L +G + +GKG KER +P+G Sbjct: 118 SSPLDTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMG 177 Query: 183 RNAVAWIEHWLDLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +A +L ++ A LFLS+LG +S + + ++ G+ + P Sbjct: 178 ESACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISP 237 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+LE+ DLR VQ +LGHA+LS+TQIYTH+ + + ++ HPR Sbjct: 238 HTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPRG 292 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 170/298 (57%), Gaps = 9/298 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 +L ++ +L YL+VE L+ T +Y R L + + + + + Sbjct: 8 NNLEKEINLFLEYLTVELGLAYNTRESYGRDLRLFAGWIKK----PLEDVKREDILAYMR 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + S + +L+AL++FF ++ ++ L+ +P++ V A LPK + ++++ + Sbjct: 64 MLKVHQYAPTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQ 123 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L P RDR MLEVMY G+R+SEL+ L ++LE+ V GKG+KER +P Sbjct: 124 LFSAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIP 183 Query: 181 IGRNAVAWIEHWL-DLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +G+ A+ +++ +L +R LF G +DD+LFL+ G ++ + + +G+K GL Sbjct: 184 LGQYAIQYLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKP 243 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATHML++ DLR VQELLGHA++STTQIYTHL L V+D HPRA Sbjct: 244 LTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 164/293 (55%), Gaps = 5/293 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +++++RY+ VE+ S T+ +Y++ ++ F S G+ + VR F K Sbjct: 8 LIDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDK 67 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR-LLDI 125 S+A +LSALRSF +L+ + + NP PK LP + ++M LL + Sbjct: 68 KYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLAL 127 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 N PL RD+A++E++Y G+R+SE L + D S V V GKG KER +P+G+ A Sbjct: 128 PANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMA 187 Query: 186 VAWIEHWL-DLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 V+ +E ++ + R +D LFL+ G +S R+++K + + + + PH Sbjct: 188 VSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQKKISPHA 247 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +RHSFATH+L + DLR VQELLGH +L TTQ+YTH+ + L +VY AHPRA Sbjct: 248 IRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 91/293 (31%), Positives = 166/293 (56%), Gaps = 5/293 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 +++ +L ++ E+ LS T+ Y R ++ N+A + ++ +Q + + F + Sbjct: 14 REIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEPEHLIAFLGSLKS 73 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 ++++ L +L+ FF +L + ++ NP+ + +PK + LP +D+++++ L++ Sbjct: 74 ADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQ 133 Query: 126 DIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 N VRDRA+ E++YG+GLR+SE+ L I +D + V GKGSKER +PIG Sbjct: 134 PDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSID--DQYIRVYGKGSKERIVPIGSQ 191 Query: 185 AVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A+ ++ +L L ++ +LF++ GK + ++ + E+ + G+ + PH L Sbjct: 192 ALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAGITKTISPHTL 251 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 RHSFATH+L + DLR +Q+LLGHAN+S+T YT + HL + HP+ K Sbjct: 252 RHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPKWK 304 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 91/292 (31%), Positives = 160/292 (54%), Gaps = 4/292 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + D+E + YL+ E+ L+ TL Y+R L + F + + +W Q + + ++ Sbjct: 1 MIRDLEDFFIYLASEKGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALK 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +++ +AS+ L A++ F +L + + N + PK + +P + +++++R+L Sbjct: 61 QQQHYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRIL 120 Query: 124 DIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 I RD+A+LE +Y GLR+SEL L I +D V V+GKG KER +PIG Sbjct: 121 AIPNIQTWRGARDKAILETLYACGLRVSELCQLKIYDVD--DTFVRVLGKGGKERIVPIG 178 Query: 183 RNAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + A+A I+ +L R+ S ++ LF++K K ++ V K + + + + PH Sbjct: 179 QQAIAAIDGYLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHT 238 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 RH+FATH+L+ DLR +Q++LGHA++++T YTH+ L + A HPR Sbjct: 239 FRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 161/298 (54%), Gaps = 5/298 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + D ++ +L+ +R LS T +Y R L+ I++ + ++Q + + Sbjct: 1 MERDAASFISFLAGQRGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G A++ LR+FF +L+ + ++ +P + PK + P+ + V++ RLL Sbjct: 61 KDLGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLL 120 Query: 124 DID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + PL +RD+AMLE++Y G+R+SEL+ L+ ++LE + G+ KER LP G Sbjct: 121 EAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFG 180 Query: 183 RNAVAWIEHWLDLRDLFG----SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 W++ +L E+ ALF ++ G RIS + K ++G + G+ + + Sbjct: 181 GVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSDIT 240 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFA H+LE D+R VQELLGH++ ST Q+Y +L +VYDA HPR R Sbjct: 241 PHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPRTMR 298 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 168/298 (56%), Gaps = 7/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 D+ ++ YL ER LS T Y+ LE ++ +E G + W Q D + ++ Sbjct: 2 FDRDLNLFIDYLVTERGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAE 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R G A+LA RL A++ +L + LK + + +PK R LP + +++ L Sbjct: 62 RDLGRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFL 121 Query: 124 DIDI---NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +P +R+RA+LEV+Y +GLR+SEL L + +D ++ + V+GKGSK R +P Sbjct: 122 KAFPASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVP 181 Query: 181 IGRNAVAWIEHWL-DLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 IG+ A+ + +L D+R L ++ +FLSK G+ ++ + + G++ + Sbjct: 182 IGKVALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKN 241 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH LRHSFA+H+L DLR +QE+LGHA++STT+IYTH+D LA+++ HPR Sbjct: 242 IHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPRG 299 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 172/298 (57%), Gaps = 8/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ VE +LR+L+ ER LS T+ Y+ LE F L +W V F + Sbjct: 1 MNEQVEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R + ++++A R++A++SFF +L + ++ +P + + +PK R LP+ + ++ LL Sbjct: 61 RERRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELL 120 Query: 124 DIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 ++ + P +RD+AMLE++Y G+R+SELV L++ +DLE EV +GK + R LPI Sbjct: 121 ELPLRSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPI 180 Query: 182 GRNAVAWIEHWLDL-RDLFGSED----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +A +E + D+ R+ +ALFL+ GKR++ + ++ + GL+ Sbjct: 181 NGSAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLS-D 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFA HML + DLR VQELLGH ++STTQIYTHL+ + + + PRA Sbjct: 240 LTPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRA 297 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 143/300 (47%), Positives = 198/300 (66%), Gaps = 6/300 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + T + + YL ERQ S T+ Y QL W +R +++ Sbjct: 14 DNWRTPITLFSDYLKFERQYSAHTVNQYVSQLG-FAALYFSKLCDDWFSVQGEHIRRYSM 72 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKA----NPAKGVSAPKAPRHLPKNIDVD 117 R K L +++L+LS +RS + +L ++N K NPA G+ PK + LPKN+DVD Sbjct: 73 ALRSKQLSGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVD 132 Query: 118 DMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 M RLL+I ++PLA+RD+AM+E+MY +GLR+SELVG +++ + +GE+ V GKG+KER Sbjct: 133 QMARLLEIPDDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKER 192 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 +P+G A+ ++ WL +R F + D+ A+FLS RIS R V+ R EWGIKQG+++ Sbjct: 193 LIPVGSKALNALKKWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQ 252 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 VHPHKLRHSFA+H+LESSGDLR VQELLGH++LS TQ+YTHLDFQHLA VYD HPRAK+ Sbjct: 253 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 312 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 115/305 (37%), Positives = 172/305 (56%), Gaps = 14/305 (4%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D V Y+ +L+VE+ SP TL NYQR L + + ++ L + D + F Sbjct: 23 DASHMVAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDL-NIDSVDEPDIEQFIAD 81 Query: 63 SRRKG-------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 RR L A+S A A+RS + + +L + A GV+ ++ + LP + Sbjct: 82 LRRGDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALT 141 Query: 116 VDDMNRLLDIDI----NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 V+ +NRL++ ++P+A+RDRA++E++YG G+R+SE + LDI +D V V+G Sbjct: 142 VEQVNRLIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVG 201 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGI 229 KG KER +PIG A+ I+ WL R D ALFL+ G R+ ++V K Sbjct: 202 KGRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAE 261 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + GL + V PH LRHS+ATH+L+ D+R VQELLGHA+++TTQIYT + +L VY Sbjct: 262 RCGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYAT 321 Query: 290 AHPRA 294 +HPRA Sbjct: 322 SHPRA 326 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 146/298 (48%), Positives = 203/298 (68%), Gaps = 3/298 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +D++RYL L E++ S T+ NY+RQLE ++ F + G +WQQ +R + Sbjct: 1 MESDIQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKR 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+G +S AL+LSA+R F ++L+S+ ++ NPA GV PK + LPKNIDVD +N L Sbjct: 61 HRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D ++P+ VRD+AM+E++Y +G+RL+EL +DI L + V+GKG+K R +P G Sbjct: 121 DQMPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFG 180 Query: 183 RNAVAWIEHWLDLRDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + WL R+ F D ALFLS+ G R++ R +Q+R A WG K GLN+ +HPH Sbjct: 181 NSSKKVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPH 240 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 KLRHS ATH+LESS DLR VQELLGHA++STTQIYTHLDFQHLA YDAAHPRA++ K Sbjct: 241 KLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKKK 298 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 119/298 (39%), Positives = 178/298 (59%), Gaps = 14/298 (4%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFA----------SENGLQSWQQCDVTMV 56 V ++L+ LS E+ SP T+ Y L A + F E L+ + + V Sbjct: 2 VVTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPV 61 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R F + +K + +++ RLSAL+SFF++LV +++ NPA+GVSAPK PR +P+ + V Sbjct: 62 RGFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTV 121 Query: 117 DDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 D++ LLD I + R+RA+ E+ Y G+R+SEL L++ +D ES V V GKG++ Sbjct: 122 DELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNR 181 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 ER +P+G A+ ++ + R E ALFL++ R S ++++ + GL Sbjct: 182 ERLVPVGDRALKAVDDY---RTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGV 238 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH LRHSFATHML++ DLRG+QE+LGHA+LS+TQIYTH+ + L VYD AHPR Sbjct: 239 PVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHPR 296 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 173/298 (58%), Gaps = 9/298 (3%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 VE+++ YL R LS TL +YQ L + + S + Q D +R + ++ Sbjct: 9 NQVEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENV-DLTQVDHKNLRLYLAYLKQ 67 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 A +L LSALR F+ W+ + + +PA +S P+APR+LP + D+NRLL+ Sbjct: 68 AQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLES 127 Query: 126 -DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 D++ +RDRA LE +Y G R+SE+ L ++ +DL++G V + GKGSKER +P+ + Sbjct: 128 CDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYES 187 Query: 185 AVAWIEHWLDL-RDLFGSEDD------ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A+ W++ +L R +D ALF+S G +SA +++K F+ + GL++ + Sbjct: 188 AIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSL 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH +RH++AT +L DLR VQELLGH +LSTTQ+YTHL L AAHPR+K Sbjct: 248 SPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRSK 305 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 133/298 (44%), Positives = 193/298 (64%), Gaps = 5/298 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L+ V++YL YL+ ++ SP T+ Y R ++ +I + G W +R+ V Sbjct: 7 PLNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVT 66 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +R+ L S+ LS+ RSFF +L+ QN +K NP G+ APK+PR LP ++D D ++++ Sbjct: 67 ARKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQV 126 Query: 123 LDI--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L+ +DP+A+RD+AMLE+ Y GLRL+EL L++ +DL + V GKG+K R+LP Sbjct: 127 LNATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLP 186 Query: 181 IGRNAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 IGR A+ ++ WL R + +ALF++ G+R+ R +Q R A G H+HP Sbjct: 187 IGRQAITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHG--QHIHP 244 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H LRHSFA+H+L+SSGDLR VQELLGH+N+STTQ+YTHLD+QHLA VYD AHPRA+ Sbjct: 245 HMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQEK 302 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 99/287 (34%), Positives = 167/287 (58%), Gaps = 3/287 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 ++L L ER LS T+ Y++ ++ F + G ++ D + F + R++G Sbjct: 12 KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGC-NFNSIDDEYIMLFIIWLRKRGDS 70 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI-N 128 + +LA RLS++R+FF W V ++ L +NPA + PK P LP + D+M RLL Sbjct: 71 SRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDIT 130 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 + L RD+ +LE++Y +G+R+SEL+G+ + D + G + V GKG KER +P+ +A+ Sbjct: 131 NKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKL 190 Query: 189 IEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 + H++ +R +F + LFL++ GK ++ + + K + + +N + PH RH+FA Sbjct: 191 LIHYVQKIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTFRHTFA 250 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 TH+LE DLR VQ LLGH ++S T++YTH+ L ++ HPR+ Sbjct: 251 THLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRS 297 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 158/303 (52%), Gaps = 10/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 V ++ YL +ER LS TL Y+ L + G + + + + F Sbjct: 15 FEDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALR-VEHGDLAAFVGAL 73 Query: 64 RRKG-----LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 G A ++ +++ LRSF+ L + L +P + P + LPK + D+ Sbjct: 74 AAGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDE 133 Query: 119 MNRLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 + LL P A+RDRA+LE+MY GLR SE V + + LD++ G + GKG+KER Sbjct: 134 VQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGNKER 193 Query: 178 RLPIGRNAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +PIG A+ + H+L R E+ +F+++ G ++ + + K GL Sbjct: 194 LVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTAGLG 253 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + + PH LRH+FATH+L DLR +QE+LGHA+++TTQIYTHL + L VY AHPRA Sbjct: 254 DKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRA 313 Query: 295 KRG 297 + G Sbjct: 314 QLG 316 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 102/290 (35%), Positives = 157/290 (54%), Gaps = 7/290 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + YL + +SP T Y L +N L W D++ V + + G Sbjct: 21 LQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHKKNRLPDWTSDDISDV---LIELTKVG 76 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 S+A LSALR F+ +L Q NP +PK R LPK++ +D+ L+ Sbjct: 77 KSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPD 136 Query: 128 -NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 L +RDRAM EV+Y GLR+SEL+ L ++ ++L+ G + + GKG+KER +P+G+ A Sbjct: 137 ITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVPLGQYAC 196 Query: 187 AWIEHWL-DLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 W+E +L + R D LFL++ G +S +N + ++ + + PH LRH Sbjct: 197 DWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAELSPHTLRH 256 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +FATH+L DLR VQ LLGH++LSTTQIYTH+ + +++ HPR Sbjct: 257 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPRG 306 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 162/314 (51%), Gaps = 22/314 (7%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA--SENGLQSWQQCDVTMVRNFAV 61 + ++ +L+YL VER S T+ Y+ + + ++ +W Q + R F Sbjct: 1 MSAALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVS 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 G S+ +LSALRSFF +++ L NP + KA + LP + ++ ++ Sbjct: 61 SLFEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDL 120 Query: 122 LLDIDIN-----------------DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 L + A RD AM+EV+Y GLR+SE GLD+ +DL Sbjct: 121 LTKAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIG 180 Query: 165 GEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGS---EDDALFLSKLGKRISARNVQ 221 G V GKG KER +GR + + ++ LR G +FL+K GKR++ R+ Q Sbjct: 181 GIARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQ 240 Query: 222 KRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 281 + + I L + PHKLRHSFATH+L++ DLR VQE+LGH NLSTTQIYTH+ + Sbjct: 241 RNLKNYLIAANLPPDLTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAE 300 Query: 282 HLASVYDAAHPRAK 295 + VY AHPRAK Sbjct: 301 RMKEVYKEAHPRAK 314 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 117/299 (39%), Positives = 169/299 (56%), Gaps = 4/299 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R+L+Y+SVER+ S TL YQ+ L A +F +G +Q VR + Sbjct: 30 MQEAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYL 89 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + S+ +LS+LRSFF + +SQ ++ NP + V + LP+ ++ +L Sbjct: 90 NEQAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLF 149 Query: 124 DI--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 D D A RDR +LEV+Y G+R+SEL L ++ L+LE + V+GKG+KER +P+ Sbjct: 150 DSLYKREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPL 209 Query: 182 GRNAVAWIEHWLDL-RDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G +A I +L R + L L+ G +S R ++ R +Q +N ++P Sbjct: 210 GDSATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYP 269 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 HKLRHSFATH+L DLR VQELLGHANLS+TQIYTH+ L S Y AHPRAK+ K Sbjct: 270 HKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRAKQAK 328 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 159/296 (53%), Gaps = 5/296 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 ++ +L L + LS TL Y+ L + GL+ + VR + Sbjct: 6 QCDPLIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLR-LRDVGQADVRAYLAY 64 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + S A LS+LR F+++L+ ++ +P + +PK RHLP ++ ++RL Sbjct: 65 RVEQQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRL 124 Query: 123 LDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L +DP+ RD+AMLE++Y GLR+SELVGL ++ + L G V ++GKG KER +P+ Sbjct: 125 LAEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPM 184 Query: 182 GRNAVAWIEHWLD-LRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A+ +EH+L R + D +F SK + ++ + R + + G+ + Sbjct: 185 GEMAITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELS 244 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ L ++ HPR Sbjct: 245 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG 300 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 117/299 (39%), Positives = 185/299 (61%), Gaps = 8/299 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + ++ +L +L E+ LS T+ NY + L NF +E L W + +R+F Sbjct: 1 MRNELLDFLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAY 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + K ++ A +LSA+RS F +L + ++++N + ++ PK R LP+ + ++++ L Sbjct: 61 LKDKNYEKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEML 120 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ++ +DP +RD+A+LEV Y +G+RL EL GLD+++LDL++G + V GKG+ ER P+G Sbjct: 121 INAPGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLG 180 Query: 183 RNAVAWIEHWL-DLRDLFGSED------DALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 A+A IE +L + R ++ DALFL+K G RIS R++++R ++ + + Sbjct: 181 SFALAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEH 240 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHSFATH+LE DLR VQELLGH N+STTQIYTH++ + VY+ HPRA Sbjct: 241 RVSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 118/294 (40%), Positives = 178/294 (60%), Gaps = 11/294 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 + +L+YL VE+Q SP T+ Y R L +A++ W+ C +R++ + + Sbjct: 10 QDFLQYLEVEKQASPHTVEVYARALRQFRAWAAD-SFPGWENCTPDQMRDWLFQELKDEA 68 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIN 128 +S+ LR +ALRSF+ +++ ++ L+ NP GVS P+ + LP + ++ M LL++ Sbjct: 69 ATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYK 128 Query: 129 D--------PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L RD A+LE+ Y G+RLSELVGLD+ +D V VMGKG KER LP Sbjct: 129 TAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERILP 188 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 +G A+A +E ++ + ++ LF+S++G R+SAR+VQ ++ + + PH Sbjct: 189 VGTPALAALETYVSM--ACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPH 246 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 K+RH+FATH+LE+ DLR VQELLGHA+LSTTQIYTH+ +A VY AHPRA Sbjct: 247 KIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA 300 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 169/298 (56%), Gaps = 4/298 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ L ++ +L ++ VE+ L+ ++ Y R L + E G+ +W++ + ++ Sbjct: 17 MSALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHL 76 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+GL S A LSA+RS L ++ A+P+ + +P+ R LP + D+++ Sbjct: 77 AELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVD 136 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL +RDRAMLE++Y GLR+SELV L + ++LE+ + GKG KER + Sbjct: 137 RLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196 Query: 180 PIGRNAVAWIEHWL---DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A ++ +L R L G LF++ G R++ + K + G+ Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRR 256 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PHKLRHSFATH+LE DLR VQE+LGHA++STTQIYTH+D H+ +YD HPRA Sbjct: 257 ISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 163/298 (54%), Gaps = 5/298 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + Y RYL E+ L ++ +Y++ L + + + + D + ++ Sbjct: 6 NQFENVLLDYTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENIL-LVKVDRFTILDWLN 64 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + G S+ +S+LR FF +L +++ +P V+ PK HLP+ + ++ Sbjct: 65 YLQNSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEA 124 Query: 122 LLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +L DI+ L +R+RA+LE MY G R+SE+ L + L E G + +GKG K+R +P Sbjct: 125 VLAVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVP 184 Query: 181 IGRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 IG ++ +I + R + + LFL+ G RIS + + K E IK G++ + Sbjct: 185 IGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDI 244 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRHSFAT++LE+ DLR VQELLGH+++STTQIYTH+ +H+ Y+ HPRAK Sbjct: 245 SPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 113/298 (37%), Positives = 171/298 (57%), Gaps = 6/298 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + V +L +LS+E+ S +T+ +Y LE + F G+ + + + ++ Sbjct: 16 PLLSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVAD 75 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G AAS+ +SAL+ F +LV + ++PA + P P LP + +D +N L Sbjct: 76 LSGRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTL 135 Query: 123 LDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD + PL VR+ LE++YG GLR SEL GLD L+ G + ++GKGS+ER +PI Sbjct: 136 LDQEFREGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPI 195 Query: 182 GRNAVAWIEHWLD-LRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G +A + +L+ R L S A+ L+ G R+S +++ E G G+ + Sbjct: 196 GGSAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGI-KDL 254 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 HPH LRHSFATH+LE DLR +QE+LGH+++STTQIYTH+D H+ Y +AHPRAK Sbjct: 255 HPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRAK 312 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 363 bits (932), Expect = 5e-99, Method: Composition-based stats. Identities = 94/296 (31%), Positives = 155/296 (52%), Gaps = 9/296 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + +L YL E L+ T+ Y R ++ + + +T + +F Sbjct: 33 QAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRR---PADLTITELSDFVASLH 89 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +GL AS++ + A+R+FF +L + NPA+ ++ KA + +P + +++ L Sbjct: 90 GEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLS 149 Query: 125 IDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D RDRA+LEV+Y G R SE+ L ++ L L+ + GKG K+R +PIG Sbjct: 150 AVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGG 209 Query: 184 NAVAWIEHWLDLRDLFGSEDDA-----LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 A+ I+ +L+ ++ + LFLS+ GK + + + + + G+++ + Sbjct: 210 RAIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDEIS 269 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+L DLR VQE+LGHA++ TTQIYTH++ L V+ HPRA Sbjct: 270 PHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 103/290 (35%), Positives = 156/290 (53%), Gaps = 7/290 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ + YL + +SP T Y L L W D+ V + + G Sbjct: 21 LQGFRDYLVAQ-TVSPHTRNAYLSDLIQCSELHRTASLPQWSSEDIGDV---LIELTKAG 76 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 S+A LSALR F+ +L Q + NP +PK R LPK++ D+ L++ Sbjct: 77 KSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPD 136 Query: 128 -NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + L +RDRAM EV+Y GLR+SEL+ L ++ ++L+ G V + GKG+KER +P+G+ A Sbjct: 137 ISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVPLGQYAC 196 Query: 187 AWIEHWL-DLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 WIE +L + R D LFL++ G +S +N + ++ + + PH LRH Sbjct: 197 DWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAELSPHTLRH 256 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +FATH+L DLR VQ LLGH++LSTTQIYTH+ + +++ HPR Sbjct: 257 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPRG 306 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 362 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 101/288 (35%), Positives = 161/288 (55%), Gaps = 4/288 (1%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 + YLS ERQLS T+ Y + F EN + Q + + ++KGL Sbjct: 5 DFKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENN-TAPQNVRPDFIDEYIYHLKQKGLS 63 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIND 129 S+ + A++SF+ +L+ ++K +P + + +PK + +P+ + ++++RLL Sbjct: 64 PKSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKT 123 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 +R +LE+ Y GLR+SELV L I+ ++L+ V GKG+K+R +PI AV + Sbjct: 124 FAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVL 183 Query: 190 EHWLDLRDLFGSEDDA---LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 E +L R+ + ++ +F++K GK+IS +V K + G G+ +HPH RH+F Sbjct: 184 EIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFRHTF 243 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ATH+L DLR +QE+LGHA+L TTQIYTHLD Q L + HPR Sbjct: 244 ATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPRG 291 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 362 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 171/318 (53%), Gaps = 23/318 (7%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M V ++L ++ VER LS T+ Y L +++ E G+ V + Sbjct: 1 MDGCERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYV 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 G A S A RL+++ +F + +S++ + + A V APK LP + VD++ Sbjct: 61 ASLDDSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVM 120 Query: 121 RLLD----------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 RL+D +DP+ +RD+A+LE MY G R+SE G+D+ +DL+ Sbjct: 121 RLMDSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDD 180 Query: 165 GEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLFGSEDD------ALFLSKLGKRISA 217 +MGKGSK+R +P+G A + +L R + S+ A+FL+K GKR+S Sbjct: 181 KVARLMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSR 240 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 ++V + G + + +HPH LRHSFATH+++ D+R VQELLGHA+++TTQIYTH Sbjct: 241 QSVWEIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300 Query: 278 LDFQHLASVYDAAHPRAK 295 + ++L Y AHPRA+ Sbjct: 301 VSPENLIEAYLTAHPRAR 318 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 362 bits (930), Expect = 9e-99, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS---ENGLQSWQQCDVTMVRNFA 60 + + + YL++E SP T+ Y+ LE +F ENG + V +R+F Sbjct: 1 MEKYIADFCNYLALE-GKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFF 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 K SLA + +AL SFF + ++ NP + + PK LPK +++ Sbjct: 60 RFLNEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVR 119 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL I D + P +R++A+LE +Y +GLR+SEL G+ ++ +DL+ G V V GKG+K+R + Sbjct: 120 TLLSIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 P+G A+ I ++L +R F E+ LFL+K GK + + + Sbjct: 180 PLGSYAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGY 239 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFATH+L DLR +QELLGH+ LSTT+ YTH+ + + Y HPR+K Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRSKE 298 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 361 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 167/298 (56%), Gaps = 7/298 (2%) Query: 4 LHTDVE-RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + +E Y+RYL +E+ SP T+ YQ+ + A F + + + + + +R + Sbjct: 8 MDAVLERDYMRYLQIEKGASPSTISQYQKDICAF--FQNMDHTKPVEDVNHQDIRRYLAL 65 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++ G ++A +L++LRS + +L + ++ NP V+ PK + LP + ++M + Sbjct: 66 LQKDGYARRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAI 125 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 D D + L R+ A++E++Y +G+R SE GL +K +DL+ + VMGKG KER LP+ Sbjct: 126 FDAIDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPV 185 Query: 182 GRNAVAWIEHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G AV + +LD R D LF++ G ++ R ++K A+ L + + Sbjct: 186 GSFAVEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLT 245 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH +RH+FATHML DLR VQELLGH +L TQIYTH+ L VY +HPRAK+ Sbjct: 246 PHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRAKK 303 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 6/294 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFAS-ENGLQSWQQCDVTMVRNFAVRSRR 65 + ++ YL +ER LS ++ Y+ + + F Q ++ F Sbjct: 6 LIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITE 65 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR-LLD 124 G+ A S A LS ++SFF +L+ + +P+ + +PK R LP + ++ + LL Sbjct: 66 LGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ID++ P +R+RAMLE +Y GLR+SEL L I +L + G V V+GKG+KER +PIGR+ Sbjct: 126 IDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRD 185 Query: 185 AVAWIEHWL-DLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +I + ++R D+ ++ +FL++ G ++S V +K GL V PH Sbjct: 186 ARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSPH 245 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH++E DLR VQE+LGH +++TT+IYTHLD +L + HPR+ Sbjct: 246 TFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 111/298 (37%), Positives = 175/298 (58%), Gaps = 10/298 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMV-----RNF 59 + + +L + S TL+ Y + L FA+ + ++ V V R+F Sbjct: 4 DHALSLFDGHLKTQ-NRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSF 62 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 +GL S+A +LSALR+FF +L + L+ NP + ++ PK R LP + ++++ Sbjct: 63 LGEMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEEL 122 Query: 120 NRLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 +RL+ L RD+ +LE++YG+GLR+SEL L+ + +D S + V GKG+KER Sbjct: 123 DRLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERI 182 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +P+ A+ +L++R+ + +AL L+ G R+S R++++ ++ GL+ H+H Sbjct: 183 VPLTNYALEAARQYLEMRE---DKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLH 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PH LRHSFATH+L+ DLR VQELLGHA LS+TQIYTHL + L VY+ HPRAK+ Sbjct: 240 PHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 168/296 (56%), Gaps = 5/296 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + D+ R+ YL E+ S T+++YQR L+ + ++ S G++ Q T + ++ ++ Sbjct: 10 QIQQDMRRFADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQ 69 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++G +S++ ++++R+FF +LV + +P+ + AP + P+ + +++ +L Sbjct: 70 MEKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQL 129 Query: 123 LDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ + +RD+AMLE++Y G+R+SEL+ + + +++ G V KER +P Sbjct: 130 LNQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCRD-SDKERVIPF 188 Query: 182 GRNAVAWIEHWLDLRD---LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G A ++ +L+ L G E + LF++ GK +S + K + + G+ + Sbjct: 189 GTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDIT 248 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSF H++++ DLR VQE++GH+++STTQIY ++ + + +Y AHPR Sbjct: 249 PHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPRG 304 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 5/297 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 V+ Y RYL +ER SP TL+ YQ L +++F + + + +++FA + Sbjct: 10 DIVKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPL-DVRLEDLQHFAGQLHE 68 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 +G S A LS +RSF+ +LV ++ +P + + +P+ HLP+ + ++++ + + Sbjct: 69 HDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIENS 128 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ID++ P R++A++EV++ GLR+SELV L + +L L+ G + V GKG+KER +PI Sbjct: 129 IDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPISPK 188 Query: 185 AVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+ + W R+L E D +FL++ G ++ + + G+ + PH Sbjct: 189 AIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQKTISPHT 248 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 LRHSFAT +L+ DLR +Q +LGH ++ TT+IYTH+D L HPR + + Sbjct: 249 LRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPRNAKDR 305 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 89/294 (30%), Positives = 156/294 (53%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + ++ + YLSVE+ LS ++ +Y L NF + + + + + F + Sbjct: 6 NNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHI-DFLKVQADDIMRFLNEEK 64 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + + + ++A + A+R F+ +L + +L NP + + P+ R +P + D++ L Sbjct: 65 DRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFA 124 Query: 125 IDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D +RD+ + E++Y +GLR+SE L + +DLE + V GKG ++R +P G Sbjct: 125 SIKEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGE 184 Query: 184 NAVAWIEHWLDL-RDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + +L R + LF+SK G I+ ++V + + + + V PH Sbjct: 185 KSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSILKKVTPH 244 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATH+LE+ DL+ VQELLGH +++TTQIYTH+ + L V+ HPR Sbjct: 245 TLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPRG 298 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 155/295 (52%), Gaps = 8/295 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + + +E + YL + S T+ Y+ L + + + + +R + Sbjct: 22 SQMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHMAA-----TIPDLTEFTLPNLRAWLG 76 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R+ +G A+LA R ++++SF W V + + A + +PK R+LP+ + Sbjct: 77 RAVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGE 136 Query: 122 LL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + RD A+LE++Y G+R+SEL GLD+ +D V V+GKG KER + Sbjct: 137 FMGSAAADTEDEFRRDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMI 196 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G+ A +E WL+ RD +DA+F+ G RI AR +++ G +H+ P Sbjct: 197 PFGKAAADALEQWLEARDRMAKVEDAMFVGVRGGRIDARQIRRIVDRTAQVAG-ADHLSP 255 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+ ATH+L+ DLR VQE+LGH++L TTQIYTH+ Q L + AHPRA Sbjct: 256 HSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 97/293 (33%), Positives = 159/293 (54%), Gaps = 5/293 (1%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 +E +L YL E ++ T+ Y+ + +++ + D+ + + R+ Sbjct: 24 HLEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRR 83 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 L A +++ L L+ FF +LV + L + A +++PK ++LPK + + +N+LL Sbjct: 84 KLAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAP 143 Query: 127 -INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 D +RDRA+L +MY G R++E+V L + + L G +GKG+KER + + A Sbjct: 144 CRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVA 203 Query: 186 VAWIEHWLD-LRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 VA +E +L R + + ALFL++ GK++S V + + G + V PH Sbjct: 204 VAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEVSPHT 263 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATHM+ ++R +QELLGHAN+ TTQIYTH+D L +V+ HPR Sbjct: 264 LRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPRG 316 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 359 bits (924), Expect = 4e-98, Method: Composition-based stats. Identities = 116/295 (39%), Positives = 184/295 (62%), Gaps = 6/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + ++++L Y+ E++LS +T+ NYQ + +I + + + +R + Sbjct: 3 NELLDQFLNYIKFEKRLSELTIKNYQNDINRLIL----INDKKLTEFNSEDIRLSLSKLH 58 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 GL SL+ LS+ RS F + +K +P G+ APK+ + LP+ + +D + L++ Sbjct: 59 ASGLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLIN 118 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 I + + RDRA+LE Y +GLRLSELV + + +D + V+GKG+K R +P+GR Sbjct: 119 IPQTNFIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRK 178 Query: 185 AVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A+ ++ W+ R+ +D+ LFL++ GK+++AR +Q R W K + ++HPH L Sbjct: 179 AIEALDLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLL 238 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 RHSFA+H+L+SS DLR VQELLGH+N+STTQIYTHLDFQHL+ +YD AHPR+K+ Sbjct: 239 RHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSKKK 293 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 359 bits (924), Expect = 4e-98, Method: Composition-based stats. Identities = 105/299 (35%), Positives = 171/299 (57%), Gaps = 7/299 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M +L ++ +L +E+ LS T+ +Y+ L A+ ++ +N L S + D ++ F Sbjct: 1 MKNL-ALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDL-SLETLDAVDLQGFL 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KG A S A LSA+R F +L + +P+ +S+PK P LPK + ++ Sbjct: 59 GERLEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVS 118 Query: 121 RLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL+ + PL +RD+AMLE++Y GLR++ELV L I+++ ++ G V V+GKG+KER + Sbjct: 119 DLLNTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIV 178 Query: 180 PIGRNAVAWIEHW-LDLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A W+ + L R + G D +F S+ ++++ + R + I ++ Sbjct: 179 PMGEEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAD 238 Query: 237 -VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FATH++ DLR VQ LLGH +LSTTQIYTH+ + L +++ HPR Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 151/297 (50%), Gaps = 8/297 (2%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRSR 64 + + +YL+VERQ S T+ Y ++A F ++ G + D V + Sbjct: 2 ELISLFKQYLTVERQYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYLF 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + L S++ ++SALRSF+ +LV + + NP + V K LP +MN L + Sbjct: 62 DRHLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFE 121 Query: 125 ID--INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 +R+ A+LEV+YG G+R+SE L +D + V+GKG+KER +P G Sbjct: 122 AVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPFG 181 Query: 183 RNAVAWIEHWLDLR-----DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 R A ++++ + + +F++ K I+ ++ + LN + Sbjct: 182 RYAKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKI 241 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HPH LRHSFAT +L + DLR VQELLGH++LSTTQIYTH+ + L Y PR+ Sbjct: 242 HPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRS 298 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 158/300 (52%), Gaps = 13/300 (4%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK-- 66 + +L YLSVER SP T+ YQR L+ + + G + Q + F Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFA 77 Query: 67 ---GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 LG+ S+ L+A RS+ +L L AN A V K PR LP+ + +++M LL Sbjct: 78 SFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALL 137 Query: 124 DIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG--EVWVMGKGSKERRL 179 + D ++RDRA+LE +Y +G R+SE + L + +D E+ V + GKG KER Sbjct: 138 AAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERIS 197 Query: 180 PIGRNAVAWIEHWL-DLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +G A ++ +L +R + +FL+ GK +S + + ++ Sbjct: 198 MLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDR 257 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 VHPH LRH FATH+L+ D+R VQELLGHA+++TT+IYT + Q L VY +AHPRA+ Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 162/294 (55%), Gaps = 8/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS--RRK 66 +++LRYL VER S T Y+ + +F E+G + + VR + R Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALADHRS 67 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 S++ ++++LRSF+ +L+ + +K NP V K LP+ ++M L D Sbjct: 68 SYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSV 127 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + PL +R+RA+LEV+YG+G+RLSE L + +D +S + + GKG+KER P+G A Sbjct: 128 AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFA 187 Query: 186 VAWIEHWLDLRDL-----FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 ++ + + E D +F++ GK I+ ++ + K L++ +HPH Sbjct: 188 QDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIHPH 247 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L + DLR VQELLGHANLSTTQIY H+ + L Y + HPRA Sbjct: 248 MLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 359 bits (922), Expect = 9e-98, Method: Composition-based stats. Identities = 99/322 (30%), Positives = 162/322 (50%), Gaps = 34/322 (10%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE----------------------- 42 ++ +L+YL+ ER+L+ TL YQ L + F + Sbjct: 36 PLLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGA 95 Query: 43 -----NGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANP 97 + Q +R + R++ S + R+SALR+FF +L + L +P Sbjct: 96 GLASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDP 155 Query: 98 AKGVSAPKAPRHLPKNIDVDDMNRLLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGL 155 A + PK R LPK + ++ +LL LA+R+ AML ++Y G+R+SELV L Sbjct: 156 AALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKL 215 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLG 212 + ++ ++G + ++GKGSKER +P G A + ++ R + D LF++ G Sbjct: 216 PVAAVN-QAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRG 274 Query: 213 KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTT 272 ++ + + ++G+ + PH LRHSFATH+LE DLR VQ +LGHA+++TT Sbjct: 275 TAMTRLRFWQIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATT 334 Query: 273 QIYTHLDFQHLASVYDAAHPRA 294 QIYTH+D L +++ HPR Sbjct: 335 QIYTHVDTNRLKAIHRKFHPRG 356 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 165/295 (55%), Gaps = 6/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW-QQCDVTMVRNFAVRS 63 ++ + YL +ER LS ++ Y R +E ++ + +Q Q ++ +++ Sbjct: 21 DAYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWI 80 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 G+ A S A +S +++F+ +L ++ ++ +P + APK R LP + +++ +++ Sbjct: 81 ATLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQII 140 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 I P R+RA+LE MY GLR+SE+ L I L ++G + V+GKG KER +PIG Sbjct: 141 GQIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIG 200 Query: 183 RNAVAWIEHWL-DLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +AV +I + ++R + ++D LFL++ G ++ + E G++ V Sbjct: 201 SDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVS 260 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH RHSFATH++E DLR VQE+LGH +++TT+IYTHLD ++L HPR Sbjct: 261 PHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 168/300 (56%), Gaps = 10/300 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T +++ YL+VER + T+ +Y+R L + ++F E L S T + F Sbjct: 64 TSAAKVARQWITYLTVERGKARNTIASYRRDLASYLDFVGERSLDSIA---ATDIEAFLQ 120 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R GL S+ LS +R F + + + + A ++ P P+HLP + VD++N Sbjct: 121 SLGRHGLAVTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINT 180 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL---DLESGEVWVMGKGSKER 177 L++ + +A+R++A+LE++YG G R+SE++ L + + + G + + GKG K+R Sbjct: 181 LIESQAGDSAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQR 240 Query: 178 RLPIGRNAVAWIEHWL-DLRDLFGS-EDDALFLSKLGKR-ISARNVQKRFAEWGIKQGLN 234 +P+G +A ++ +L R + ALFL+ G + +S ++ + + + G+ Sbjct: 241 IVPVGSHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGIT 300 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHSFATH+LE D+R VQELLGHA+++TTQIYTH+ L +++ AHPRA Sbjct: 301 KDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 170/294 (57%), Gaps = 3/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + +E +L+Y++VE+++S T Y L + ++ G++ W + + + Sbjct: 2 MRSHIESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEEL 61 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G ++SL +S++R F L +P+ + +PKA + LP ++ RLL Sbjct: 62 SQAGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLL 121 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D +DPL++RDRAMLE++YG G+R+SEL+GLD+ L E G + GKG + R +P+ Sbjct: 122 DSVPTSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVS 181 Query: 183 RNAVAWIEHWLD-LRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A +++E ++ R+ G E +ALFL+ G R+S + K G+ + PH Sbjct: 182 SVAQSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHSFATH+LE+ DLR +Q++LGHA+L+TTQ+YTH++ L VY HPRA Sbjct: 242 VLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 96/286 (33%), Positives = 153/286 (53%), Gaps = 1/286 (0%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 Y Y+ +E++LS T+ +Y R L +F ++ + M+ + +G Sbjct: 13 RSYRVYIKLEKRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGR 72 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DI 127 S A LS +RSF+++L+ + + + P + + PK RHLP + V++++R++ D Sbjct: 73 EKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDT 132 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + RD AMLEV+Y GLR+SEL L + L G + V GKG K+R +P+ A Sbjct: 133 STVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAARE 192 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 I+ +LD R S D +FL+ G +++ V E + G++ H+ PH RHSFA Sbjct: 193 KIQRYLDDRATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFA 252 Query: 248 THMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 TH+LE +R VQE+LGH ++ TT+IYTHL+ HL + P Sbjct: 253 THLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLPL 298 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 171/329 (51%), Gaps = 35/329 (10%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFA 60 + ++++L ++SVER LSP T+ +Y+ L N+ E + + + + Sbjct: 7 SPFSPKIQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYV 66 Query: 61 VRSRRK-----GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 + LG ++A R++++ + +++S ++ ++P+ V APK HLP + Sbjct: 67 RAMSSQAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLS 126 Query: 116 VDDMNRLLDID----INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + ++ R++D D +++RDRA++E +Y G R+SE VGL + +DL V + G Sbjct: 127 ISEVERVIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSG 186 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLFGS------------------------EDDAL 206 KG K+R +PIG+ AV + +L + R + S + Sbjct: 187 KGQKQRLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVI 246 Query: 207 FLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGH 266 FL+K GK +S ++ + + G + +HPH LRHSFATH++ D+R VQELLGH Sbjct: 247 FLNKRGKSLSRQSAWEAISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGH 306 Query: 267 ANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 A+++TTQIYTH+ L Y +HPRA+ Sbjct: 307 ASVTTTQIYTHISPDALMEAYVMSHPRAR 335 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 166/302 (54%), Gaps = 7/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL-QSWQQCDVTMVRNF 59 M + + +++Y YL ERQ S +TL Y+ + +NF S+NG + + D VR + Sbjct: 1 MNQITSTMKKYEEYLQAERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIY 60 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + L S+A ++S+LRSF+ +L+ + K NP + + + LP+ + ++ Sbjct: 61 LNNLYERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEV 120 Query: 120 NRLL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L D + +R+ A++E++Y G+R+ E+ L +D S V + GKG K+R Sbjct: 121 IEYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180 Query: 178 RLPIGRNAVAWIEHWLDLRDL----FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 +P G+ A+A ++ +L R+ F + +F++ G++++ + + + L Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKL 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++HPH LRHSFATH+L + D+R VQELLGHA+LSTTQIYTH+ ++L Y R Sbjct: 241 TANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDR 300 Query: 294 AK 295 AK Sbjct: 301 AK 302 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 167/295 (56%), Gaps = 8/295 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + LHT ++ + +L + S T+ Y+ L +A + ++ + +R + Sbjct: 20 SKLHTLIDDFCEHLDLVVGRSAATIRGYRSDL-----YAMADTIEDIDNFSLPTLRQWLG 74 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +G A+LA R +++++F W LKA+ A + +PK R LPK + Sbjct: 75 IAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGD 134 Query: 122 LLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 ++ N+ +RD A+LE++Y G+R++EL G+D+ +D + V V+GKG+KER + Sbjct: 135 FVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERVV 194 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G +A + +WLD+RD + ALF+ G+RI+AR V++ G++ H+ P Sbjct: 195 PFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD-HLSP 253 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+ ATH+L+ DLR VQELLGH+++ TTQIYTH+ + L ++ AHPRA Sbjct: 254 HSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 148/299 (49%), Positives = 183/299 (61%), Gaps = 7/299 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T + Y + L + SP T Y+R L+A+ G Q +R Sbjct: 21 TSWEQRIAGYDQSLQLA-GKSPHTRSAYRRDLQALAAL---QGAQDPATLTAQQIRLAVA 76 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R KG SLA LSA R FFDWL+ Q +L ANP G+ PK+P+ LPK + VD + Sbjct: 77 RLHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKALPVDATSA 136 Query: 122 LLDI--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LLD D D LA+RD+AM E++Y GLRLSEL GLD+ LDL G + GKG+K R L Sbjct: 137 LLDAPIDPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLGEGLLTAHGKGNKTRIL 196 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 PIGR A +E WL +R + A+F K G+R+S R V+KR +W + G + HVHP Sbjct: 197 PIGRQARQALERWLAIRPS-QPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHGSDRHVHP 255 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 H LRHSFA+H+L+SSGDLR VQELLGHANLSTTQIYT LDFQHLA VYDA HPRAK + Sbjct: 256 HMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRAKLDE 314 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 154/306 (50%), Gaps = 17/306 (5%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ + YL R LS T Y+ LE + G + + + +R + +S Sbjct: 3 FADTIDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQS 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ +S+A + A+R FF W + ANPA + PK P LP + +L+ Sbjct: 63 SKRH-ARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLM 121 Query: 124 D------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 D + +R+ AMLEV+Y G+R++ELVGLD+ + ++ + V G Sbjct: 122 DCVDEQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTG 181 Query: 172 KGSKERRLPIGRNAVAWIEHWLDL---RDLFGSEDDALFLSKLGKRISARNVQKRFAEWG 228 KG+K+R +P G A I WL+ R + DALFL G RI R V++ E Sbjct: 182 KGNKQRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECA 241 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 + G+ + PH LRHS ATH+L+ DLR VQELLGH++L TTQ YTH+ + L + Y Sbjct: 242 QRAGVP-DISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYG 300 Query: 289 AAHPRA 294 A PRA Sbjct: 301 QAFPRA 306 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 163/295 (55%), Gaps = 8/295 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + ++ + +YL+ ER S TL Y+R + F + L ++ +R F Sbjct: 24 NEKIDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKRL-NFSHAGKRDIREFLEELG 82 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS-APKAPRHLPKNIDVDDMNRLL 123 K L A+LA +L+ L SF+ +L+ +K N + + + K + +P + ++M LL Sbjct: 83 NKKLSRATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQMLL 142 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 ++ P RDRAM+E+ Y GLR+ ELV LD+K++D S V V GK +KER +P+G Sbjct: 143 NLPDLKP---RDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVPVGD 199 Query: 184 NAVAWIEHWLDLRDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 + I+ +++ R G D +FLS KR+ R ++ + +K G V PH Sbjct: 200 ICLHAIKDYINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPH 259 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 LRH+FATH+L+ DLR VQE+LGH NLS+TQIYTH+ + L VY HPRAK Sbjct: 260 TLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRAK 314 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 119/301 (39%), Positives = 173/301 (57%), Gaps = 8/301 (2%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + E ++ ++ R SP T +Y R LE + +E + + Q D ++ ++ Sbjct: 14 QLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVTL 73 Query: 63 SR-----RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 R R + +S + LS LRSF+ +L+ +K NP +G+ APK R +P+ + D Sbjct: 74 LRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTFD 133 Query: 118 DMNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 M L D D+NDP A+R+RA+LE MY GLR+SE+ L + LDL + V GKG K+ Sbjct: 134 QMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDKQ 193 Query: 177 RRLPIGRNAVAWIEHWL-DLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 R +P + + +L D R L+ E+ +F+S+ G I+ R VQ A+ G GLN Sbjct: 194 RIVPFYKRLRTLLTRYLRDSRALYLKEEHGFVFVSQRGAPITPRAVQLILAQAGQDAGLN 253 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH LRHSFATH+L++ DLR VQELLGH++LSTTQIYTH+ L DAAHP + Sbjct: 254 QPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHPHS 313 Query: 295 K 295 K Sbjct: 314 K 314 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 169/312 (54%), Gaps = 19/312 (6%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ---SWQQCDVTMVRN 58 T L ++ +L +L ER LSP TL Y+R L ++ + W + T +R Sbjct: 13 TPLPVEIGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRG 72 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + R+GL S+A +LSA+RSF+ W+ + NPA+ V +PK PR LP +D Sbjct: 73 YMAHLTRRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQ 132 Query: 119 MNRLLDIDIN-----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 L+ + VR+ AMLE+ Y +GLRLSEL G+D+ LDL S +V V GKG Sbjct: 133 AETLMQHAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKG 192 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFGSEDD-----------ALFLSKLGKRISARNVQK 222 KER +P+G +A + ++L RD ++ A+FLS+ G RISAR VQ Sbjct: 193 RKERIVPLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQH 252 Query: 223 RFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQH 282 + H LRH+FATH++++ DLR VQELLGHA++STTQIYTH Sbjct: 253 AMVTLMSAVSEGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDR 312 Query: 283 LASVYDAAHPRA 294 L VY AHPRA Sbjct: 313 LKKVYRQAHPRA 324 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 6/296 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 H ++ YL +L ER+ S +T +Y R L + + + + V+ +R + + Sbjct: 24 HAYLQGYLAWLLGERRYSKLTAESYARDLAHLFEL---STGLALNELKVSHIRRYIAQLH 80 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 GLG SLA LSA R F+++L+ + NP G+ APK+ R LP+ + D R++D Sbjct: 81 SSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVD 140 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL--DLESGEVWVMGKGSKERRLPIG 182 + + P ++RD+AM E+ Y +GLRL EL+ LD + + D+ +GEV V GKG K R +P+G Sbjct: 141 LPTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLG 200 Query: 183 RNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A++ + WL +R + + ALF+ G RIS R VQ R +WGIKQG+ + VHPH Sbjct: 201 GCAISALHEWLAVRPTLANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHM 260 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 LRHSFATH+L+SSGDLR VQE+LGHA++STTQ+YTHLDFQ+L+ +YDAAHPRAKR Sbjct: 261 LRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAKRK 316 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 160/307 (52%), Gaps = 17/307 (5%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ--SWQQCDVTMVRNFAVRSR 64 +E +L +++V++ S T Y L + F + Q ++ F Sbjct: 66 LIEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLF 125 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 RKG +S+A +L+A RSFF + + ++ N A V P+ + P+ ++VD+ LLD Sbjct: 126 RKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLD 185 Query: 125 IDI--------------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 + + RD A+ E++YG+GLR+SE + LD+ + L S + VM Sbjct: 186 SATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVM 245 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFG-SEDDALFLSKLGKRISARNVQKRFAEWGI 229 GKGS+ER P+ + + ++ WL+ R L ++ ALF+ G R++ R + Sbjct: 246 GKGSRERLAPLSDTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCR 305 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + GL V PH LRHSFATH+LE+ D+R VQELLGH L+TTQ YT + + L YD Sbjct: 306 RAGLTFTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQ 365 Query: 290 AHPRAKR 296 AHPR+ + Sbjct: 366 AHPRSGK 372 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 103/294 (35%), Positives = 150/294 (51%), Gaps = 6/294 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 T +E + L +E LS TL Y+R L + + S D M+ + R Sbjct: 50 RTSIELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAA-R 108 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +S RLS R ++ W + ++ +P + + K P P + + LL Sbjct: 109 SDGKATSS-NRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLA 167 Query: 125 IDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 L +RDR MLE+MY +GLR+SELV L + L G V VMGKGSKER +P G Sbjct: 168 APEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGE 227 Query: 184 NAVAWIEHWL-DLRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A WIE +L + R DALF++ G+ ++ + ++ + H+ PH Sbjct: 228 VAHGWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAHLSPH 287 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH+++STTQIYTH+ + L +++ A HPR Sbjct: 288 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG 341 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 114/294 (38%), Positives = 170/294 (57%), Gaps = 3/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R++ YL VER + T Y R L+ ++ F ++ W + F + Sbjct: 1 MQKQINRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTM 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R + + ++ LS++R F +LV+Q L+ N A+G+ +PK + LPK +D + + ++L Sbjct: 61 RHQNISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML 120 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + +RD AM+EV+Y GLR+SELVGLDI+ +D G + VMGKGSK R P+G Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180 Query: 184 NAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 +A I +L + ALF++ +RIS R VQ + G+ +VHPH LR Sbjct: 181 SAQKSINRYLQ---KTSHTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLR 237 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H+ ATH L+SS DLR VQE LGH ++ +TQ+YTHLDF L+ VYD HPRAK+ Sbjct: 238 HAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRAKKS 291 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 354 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 171/299 (57%), Gaps = 18/299 (6%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +E YL +L+ + S T+ Y+ L ++++ GL + Q + +R + + R G Sbjct: 35 IEDYLDFLTFTKGRSENTVKAYRNDLHSLVD-----GLTTVDQLTLHHIRRWQADALRAG 89 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--- 124 +SL+ R SA+R+F WL + ++++PA +S+P+ + LP+ + D +L Sbjct: 90 HARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLE 149 Query: 125 --IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + DP+A+RD AM+E MYG G+R+SEL L+I LD V ++GKG+K+R +P G Sbjct: 150 VGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPFG 209 Query: 183 RNAVAWIEHWLDL-RDL------FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +A ++ W+D+ R D+A+FL K G RI R V+ + Sbjct: 210 ESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQATSTVS-GG 268 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 V PH LRHS AT +LE DLR VQE+LGHA+L+TTQIYTH+D + L +V++ AHPRA Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 354 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 91/301 (30%), Positives = 159/301 (52%), Gaps = 6/301 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNF 59 M ++ + +L ER S TL Y R + + ++A + + ++ + Sbjct: 1 MMTWTEKIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEY 60 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + ++ S A +S++++FF +L + NP + +PK +LP + +D+ Sbjct: 61 LFQLSKQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDV 120 Query: 120 NRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 R++ +I+ L R++ M+EV+YG GLR+SEL+ L I +++ + + V GKG K R Sbjct: 121 ERIIKAINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRF 180 Query: 179 LPIGRNAVAWIEHWL-DLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P+ I+ ++ ++R + +D LFL+ G +S V E K G+N Sbjct: 181 VPLATYTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH RHSFATH+L++ DLR +QE+LGH++++TT+IYTHL + L V HPR Sbjct: 241 KKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPRN 300 Query: 295 K 295 K Sbjct: 301 K 301 >UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178962A Length = 294 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 105/295 (35%), Positives = 173/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++ Y++YL E+ LS T+ +Y+ L+ + FA+E + ++ + T++ + R Sbjct: 1 MKPYLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R++G A+SL ++LRSFF +LV Q + +P + + PK R PK++ V+ +++LL Sbjct: 61 RQQGKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLL 120 Query: 124 DIDIN-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + P RD+AMLE++Y +G+++SELV L I + LE + G KER LPI Sbjct: 121 SAPDSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPIT 180 Query: 183 RNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 A + ++ D+RD + +DALFL+ LG R++ + K ++G G++ + P Sbjct: 181 PIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITP 240 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFA H+L + DLR VQE+LGH+ LSTT +Y + + VYD HPR+ Sbjct: 241 HTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPRS 294 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 104/293 (35%), Positives = 167/293 (56%), Gaps = 11/293 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS-RRKG 67 ER+LR+L +ER LS TL +Y+R + + + + + + +F + +G Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLGARSVTEL---NTGDIESFMASLAKGEG 70 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L A++ A L+A+R+F +L + + + A V+ P +PK + + ++ +L+ Sbjct: 71 LAASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCP 130 Query: 128 NDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 ND A +RDRA+LE++Y G R+SEL+GLD+ +D + V GKGSKER +P+G Sbjct: 131 NDDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGD 190 Query: 184 NAVAWIEHWL-DLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A+ ++H+L +R F + ALFL++ G R+ ++ + K G+ V PH Sbjct: 191 PALDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAG-VSPHS 249 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHSFATH+LE D+R VQELLGH+N+ TTQIYT + HL + +HPR+ Sbjct: 250 FRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPRS 302 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 159/296 (53%), Gaps = 11/296 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGL 68 ER+L ++++E+ SP T+ Y+R L F ++ F R +G Sbjct: 8 ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVL-SVQSPVIEQFIASLRAEGK 66 Query: 69 GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDIN 128 A S+A +A+R +L+ + NP GV K P +PK + D++ R+L Sbjct: 67 AAKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTG 126 Query: 129 -DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 D A+RDRA+LE +Y G R+SE GL + LD+ES V + GKGSKER +P G +A A Sbjct: 127 VDSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKA 186 Query: 188 WIEHWLDL--RDLFGSED-------DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 +E WL R + SE DA+FL G R+S + + ++ + + V Sbjct: 187 ALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEVGDEVS 246 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHS ATHML DLR VQELLGHA++STTQ+YT +D + L +Y +HPRA Sbjct: 247 PHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 157/291 (53%), Gaps = 9/291 (3%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLG 69 + YL E L+ T+ Y+R L + +++ + V + ++ ++ L Sbjct: 4 AFTDYLQSECHLAANTVAAYRRDLVRFERWLGAREIRTLR---VGELSDYVAWLYKEELA 60 Query: 70 AASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID-IN 128 AS+A + +L+ FF +L + L+ N + + + K R +P I ++ LL Sbjct: 61 PASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWSE 120 Query: 129 DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAW 188 DP RDRA+LEV+Y G R SE+ GL + + L+ G V GKGSK+R P+ + + Sbjct: 121 DPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSARV 180 Query: 189 IEHWL-DLRDLFGSED----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 ++ +L + R ++ LFLS+ GKR+S + + ++ + G++ V PH LR Sbjct: 181 VKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDVSPHSLR 240 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFATH+L DLR VQE++GHA+++TTQIYTH+D L V+ HPRA Sbjct: 241 HSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 157/301 (52%), Gaps = 12/301 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 + D + + + + + R LS T Y R L+ ++ V Sbjct: 17 VDDEPAYITEFRQAM-LARGLSTRTRNAYVRDLKL----CETTHSKALTLWSDMDVMQCL 71 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+G + A LS+LR F+ W+V + NP + + PK R LPK++ +D+ Sbjct: 72 TALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVE 131 Query: 121 RLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL D + L +RD+AMLEV+Y GLR+SEL+ L ++ ++L +G + + GKG+K R + Sbjct: 132 SLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLV 191 Query: 180 PIGRNAVAWIEHWL-DLRDLF-----GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 P+G A ++ +L R A+FL+ G ++ +N ++ + G+ Sbjct: 192 PLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGI 251 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 + + PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ L +++A HPR Sbjct: 252 QSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPR 311 Query: 294 A 294 Sbjct: 312 G 312 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 94/301 (31%), Positives = 155/301 (51%), Gaps = 12/301 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +E ++++L + LSP T Y+ L+A + + +N +R++ + Sbjct: 43 QQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNS-YDLLDISHKQLRSYLAQLY 101 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + ++ LSA+R+++ WLV + K + A +++PK P+ LP + + +LL Sbjct: 102 AARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLA 161 Query: 125 IDINDPL-AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D + +RDRA+LE++Y G R+SE L + + +S +V + GKGSKER +PI Sbjct: 162 TCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYP 221 Query: 184 NAVAWIEHWLD-LRDLFGSE---------DDALFLSKLGKRISARNVQKRFAEWGIKQGL 233 + +L R + S+ + +F+S GK +S + ++ F + L Sbjct: 222 ECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHL 281 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 PH +RHSFAT +L DLR VQELLGHA+L+TTQIYTH+ L A+PR Sbjct: 282 QEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPR 341 Query: 294 A 294 A Sbjct: 342 A 342 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 114/305 (37%), Positives = 180/305 (59%), Gaps = 13/305 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-----WQQCDVTMVRN 58 ++ ++ +L YL VE+ SP T +YQ+ L +++ + + D + R+ Sbjct: 1 MYVHIDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRH 60 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + +++GL A++A RL+A RSF+ +L + + NP V++PK + LP+ + D+ Sbjct: 61 YLAHMQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDE 120 Query: 119 MNRLLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L++ D PL +RDRA+LE +Y GLR+SELV LD+ LD+ SG + V GK ++ER Sbjct: 121 AKELVEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARER 180 Query: 178 RLPIGRNAVAWIEHWL-DLRDLFGSED------DALFLSKLGKRISARNVQKRFAEWGIK 230 +P+G AV ++ +L R + +ALFL+ G+R+SAR ++K ++ K Sbjct: 181 LVPLGSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK 240 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 L + PH LRHSFATH+L + DLR VQEL+GH LS+TQ+YTH+ + L VY + Sbjct: 241 VSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKS 300 Query: 291 HPRAK 295 HPRAK Sbjct: 301 HPRAK 305 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 171/304 (56%), Gaps = 10/304 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQSWQQCDVTMVRNFA 60 + ++R++ ++ +ER LS T+ Y L+ + +E ++ + ++ Sbjct: 16 EEFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYI 75 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 GLG ++A RL+++ + ++++ +++A+ + V APK +LP + ++++N Sbjct: 76 RTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVN 135 Query: 121 RLLDIDIN----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 R+++ N D +++RD A+LE +Y G R+SE VG+ + +DL V + GKGSK+ Sbjct: 136 RVIEAAGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQ 195 Query: 177 RRLPIGRNAVAWIEHWLD-LRDLFGSEDDA----LFLSKLGKRISARNVQKRFAEWGIKQ 231 R +PIG AV + ++++ R + +FL+K G +S ++ + + G + Sbjct: 196 RLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERA 255 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 L+ +HPH LRHS ATH++ D+R VQELLGHA+++TTQIYTH+ L Y +H Sbjct: 256 KLDKPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSH 315 Query: 292 PRAK 295 PRAK Sbjct: 316 PRAK 319 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 6/298 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+D +ER+L L +E L+ TL+ Y+R L+A+ +F + L + V + Sbjct: 1 MSDYR-LMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLT-LPEIQRQDVLEYI 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +K L +++A +LSA+R F LV + +P GV PK R LP + + Sbjct: 59 GELAQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETE 118 Query: 121 RLL-DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL D + L +RD AMLE+MY GLR+SELV L + LD E+G V V+GKG+KER + Sbjct: 119 ALLYAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIV 178 Query: 180 PIGRNAVAWIEHWLD-LRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G A + + R + + LFLS G ++ N + + + Sbjct: 179 PMGEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKP 238 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH +RH+FATH+L DLR VQ +LGHA++STT+IYTH+ L ++D HPR Sbjct: 239 LSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPRG 296 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 166/297 (55%), Gaps = 5/297 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + + Y +YL VE+ LS T+ +Y R L A NF E + + + + + Sbjct: 3 IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 62 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + S++ +L +LR + +LV +N +K N + PK + LP + ++M + Sbjct: 63 LSKTNC-TNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEI 121 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 LD I + D ++ R+R M+E++Y G+R+SEL+ L +K L+++ G + V+GKG+KER +PI Sbjct: 122 LDGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPI 181 Query: 182 GRNAVAWIEHWL-DLRDLFGSEDDAL-FLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G +E ++ D R F ++D+L F +K G+R+S + V P Sbjct: 182 GSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSP 241 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 H RH+FATH+LE+ DLR +QELLGH+++STT IYTH+ Q + S Y HPR K+ Sbjct: 242 HTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 298 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 109/309 (35%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQS-WQQCDVTMVRNFAVR 62 ++ +L +L+ +R S T NY++ L + E G++ W+ R + Sbjct: 29 EKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRF 88 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R L A++ LR ALR+F+ +L+ + A+P K VS PK + LPK + M L Sbjct: 89 LGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVEL 148 Query: 123 LDIDINDPLA---------------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEV 167 L + RD A+LE +Y GLR+SEL GL + +D V Sbjct: 149 LGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLV 208 Query: 168 WVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSK--LGKRISARNVQKRFA 225 V GKG KER++PIG A+ I ++ + +FL + +S R +Q+R Sbjct: 209 RVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLK 268 Query: 226 EWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLAS 285 ++ GL+ + PHKLRHS+ATHML++ DLR VQELLGHA+L TTQ+YTH+ + L Sbjct: 269 KYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKR 328 Query: 286 VYDAAHPRA 294 YD+AHPRA Sbjct: 329 AYDSAHPRA 337 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 178/315 (56%), Gaps = 23/315 (7%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ----------------- 46 + +E ++ YL+ ER LS L+ + LE + + Sbjct: 1 MRVAIEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLP 60 Query: 47 --SWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAP 104 + + + ++ +R GL AAS+ L + AL+ FF WL ++ ++ + A+ + P Sbjct: 61 EVAPGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLP 120 Query: 105 KAPRHLPKNIDVDDMNRLLD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLE 163 + R+LP+ ++ ++RLL+ I I+ P +RDRA+LE++Y +GLR+SELV +++LDL+ Sbjct: 121 RTERYLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLD 180 Query: 164 SGEVWVMGKGSKERRLPIGRNAVAWIEHWLD-LRDLFGSED--DALFLSKLGKRISARNV 220 + + V GKG+K R +P+G+ A I +L+ R + +FLS G +++ + Sbjct: 181 ARIIRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRI 240 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 + GL+ +V+PH LRHSFATH+L + DLR +QE+LGHA++STTQIYTH+D Sbjct: 241 WQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQ 300 Query: 281 QHLASVYDAAHPRAK 295 Q L +V+ HPRAK Sbjct: 301 QRLKAVHHRFHPRAK 315 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 159/304 (52%), Gaps = 10/304 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS---WQQCDVTMVR 57 + + + +L YL +ERQ S T Y+ + + F S VR Sbjct: 3 VNEAERAKQLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVR 62 Query: 58 NFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 F KG G+ ++A ++S+LRSF+ +L++ + NP G+ K +HLP+ Sbjct: 63 VFLSELYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQK 122 Query: 118 DMNRLLDIDIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 ++ ++ D+ + D L +R+ +LE++YG G R+SE+ + ++++D + V + GKG+K Sbjct: 123 ELTKMFDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNK 182 Query: 176 ERRLPIGRNAVAWIEHWLDL-RDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIK 230 R +P GR A + +L R + S+ + LFL++ G ++ ++ + G K Sbjct: 183 TRIVPFGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKK 242 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 GL V H RH+FAT +L + DLR VQ+LLGH++LSTTQIYTH+ L Y Sbjct: 243 SGLTQEVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNF 302 Query: 291 HPRA 294 PRA Sbjct: 303 FPRA 306 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 111/297 (37%), Positives = 186/297 (62%), Gaps = 5/297 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT++ ++ +L L + S T+ NY+R L + + + + + + + Sbjct: 1 MTNIE-HIDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDITKLEN---NDILMWV 56 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + +G + +L +LS+LRSFF++L++ +K NP G+ APK+ + LPK ++ D++ Sbjct: 57 KKLHAQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELA 116 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLDI ++ + RD A +++Y G+RLSEL +++K +++ + V+GKG+KER + Sbjct: 117 YLLDIKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVY 176 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 G + + WL+ RD + + + LF+S+ G+ ++ R++QKR + K H+HPH Sbjct: 177 FGSKTLINLNRWLNTRDTYSPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYA-TKHIHPH 235 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 LRHSFATH+L+SS DL V++LLGHA++S+TQIYTHL+FQ LASV+D AHPRAK+ Sbjct: 236 MLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 110/318 (34%), Positives = 163/318 (51%), Gaps = 24/318 (7%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M T E YL Y+ +ER S TL +Y L ++F + + +V + Sbjct: 1 MDTFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYI 60 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +G+ ++++ +S+++ F ++V + + +P + PK HLP + D + Sbjct: 61 AHLFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQII 120 Query: 121 RLLDIDINDPLA-------------------VRDRAMLEVMYGAGLRLSELVGLDIKHLD 161 LLD L RD+A+LE++YG GLR+SEL GL+ + Sbjct: 121 HLLDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVL 180 Query: 162 LESGEVWVMGKGSKERRLPIGRNAVAWIEHWL-DLRDLFG---SEDDALFLSKLGKRISA 217 + V V GKGSKER +P A+ +++ R L DA+FLS G RIS Sbjct: 181 VSDELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISR 240 Query: 218 RNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 + V +G G+ +HPH LRHS+ATHMLE +LR VQELLGHA++STTQ+YTH Sbjct: 241 QAVFSLVERYGSYVGI-KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTH 299 Query: 278 LDFQHLASVYDAAHPRAK 295 +D H+ S Y AAHPRA+ Sbjct: 300 IDLTHIRSEYMAAHPRAQ 317 >UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira RepID=XERC_LEPIC Length = 318 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 97/299 (32%), Positives = 174/299 (58%), Gaps = 5/299 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 L+ ++++ YL +E+ S T+ Y L+ F + L Q + +R++ Sbjct: 21 ESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQL-DIFQIEPVDIRSYFA 79 Query: 62 RSRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +K + S + +LS+LR+F+ L+ ++ +K+NPA +S PK + +PKN +++ Sbjct: 80 YLAKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETE 139 Query: 121 RLLDIDINDPLA---VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 +L+ + + +RDRAM+EV+Y +GLR+ ELV + L + + V+GKG KER Sbjct: 140 EILEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKER 199 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 + G+ AV+ ++ +L+ R++ + + +FL++ GK+++ R V+ E K G + Sbjct: 200 FVYFGKEAVSSLQKYLEYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTI 259 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 PHK RH+FAT +L++ ++R VQELLGH++LSTTQIY + + + VY AHP A++ Sbjct: 260 TPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHARK 318 >UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S88_SHEDO Length = 321 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 155/314 (49%), Positives = 203/314 (64%), Gaps = 21/314 (6%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA--------------------SENGL 45 + R+ RYL+ ERQLSP T+ NY +L + S Sbjct: 5 SLFARFERYLTSERQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTD 64 Query: 46 QSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPK 105 + W ++ + R+GL SL+L LSAL+ FF++L++++ + NPAKG+SAPK Sbjct: 65 EQWLALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPK 124 Query: 106 APRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG 165 + LPKNIDVD ++ LL ID +DPL +RDRA++E+ Y +GLRL EL L+ + L Sbjct: 125 QAKPLPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQ 184 Query: 166 EVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRF 224 EV V+GKG KERR+P+G+ A+ + W R L ++ ALF+S GKR+S R++Q R Sbjct: 185 EVKVLGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARM 244 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 A+WG Q L+ VHPHKLRHSFATHMLESSGDLR VQELLGHANLSTTQIYT LDFQHLA Sbjct: 245 AKWGQNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLA 304 Query: 285 SVYDAAHPRAKRGK 298 VYD AHPRAK+G+ Sbjct: 305 KVYDGAHPRAKKGR 318 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 105/295 (35%), Positives = 161/295 (54%), Gaps = 3/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++ E +L L VER S TL +YQ L F + LQ + + RN+ Sbjct: 1 MNHIQEAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQ-LKTFEYRDARNYLSYL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 L S++ ++S LR+F+++ ++ +E NP + PK ++LP+ ++M L Sbjct: 60 YSNHLKRTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALF 119 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + +RDR +LE++Y G+R+SELV + + +D + V V+GKGSKER +P G Sbjct: 120 KTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFG 179 Query: 183 RNAVAWIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 IE++L+ + + D L L+ G+ I+ R V+ + + + +HPHK Sbjct: 180 AYCRQSIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHK 239 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRH+FATH+L DLR VQ LLGH NLSTT YTH+ Q L VY AHPRAK+ Sbjct: 240 LRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKK 294 >UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular organisms RepID=XERC_RALPJ Length = 328 Score = 349 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 138/313 (44%), Positives = 184/313 (58%), Gaps = 20/313 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ-SWQQCDVTMVRNFAVRS 63 H + YL L ERQLSP TL +Y R+L + +++ Q +R + Sbjct: 16 HPQIAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQL 75 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNE-LKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL S+A LSA R +F W+ ++ + ANP GV APK+P+ LPK + V+ L Sbjct: 76 HGDGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVAL 135 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL-----------DLESGEVWVM 170 ++ +D +RDRA+ E+ Y GLRLSELV LD++H+ DLE+ EV V+ Sbjct: 136 MEQLPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVL 195 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED------DALFLSKLGKRISARNVQKRF 224 GKGSK R +P+G A + WL +R D ALFLS GKR++ R +Q R Sbjct: 196 GKGSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRM 255 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 I G+ VHPH LRHSFATHML+SSGDLR VQELLGHA++++TQ+YT LDFQHLA Sbjct: 256 KRNAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLA 315 Query: 285 SVYDAAHPRAKRG 297 +YD AHPRAK+ Sbjct: 316 KIYDQAHPRAKKK 328 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 142/299 (47%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D ++ YL L+ R+ S T Y+R L A + L W D +R + Sbjct: 4 DSLEQLDDYLDRLA--RRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYVGT 61 Query: 63 SRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 +G L A SL L+A+R FFD L+ + L NPA+ V P++ R LP+ +DVD + Sbjct: 62 RHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVAG 121 Query: 122 LLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM-GKGSKERRLP 180 LLD +D L RDRAM E+ Y +GLRLSELVGLD+ +D +G V+V GKG K R +P Sbjct: 122 LLDAPADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARYVP 181 Query: 181 IGRNAVAWIEHWLDLRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +G A+ I WL+ R + G+ ALFLS+ G+RI+ R V+ R W K GL+ VHP Sbjct: 182 VGAKALEAIGAWLEARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHP 241 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 H LRHSFA+HMLE+SGDLR VQELLGHA L+TTQIYTH+DFQ LA+VYD +HPRA+R + Sbjct: 242 HMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARRDR 300 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 107/297 (36%), Positives = 165/297 (55%), Gaps = 3/297 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M + + +++ L + S TL Y L+ + N+ +E+ L + + T +R + Sbjct: 1 MESNASLINKFILSLQS-KNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + ++ ++S +RSF +L+ +K NP K + PK + LPK + ++ + Sbjct: 60 GVTSEGDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETD 119 Query: 121 RLLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RL+D N L RD+A+ E++Y +GLR SE+ GL IK +DL G V VMGKGSKER + Sbjct: 120 RLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 PI A+ ++ +L R ++ S D LFL++LG R++ + IK L V Sbjct: 180 PITDLAIEALKEYLSTRGVYNSG-DPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTA 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 H LRHSFATHML + DLR +QE+LGH +LS TQ+YTH+ L +Y HPR+K Sbjct: 239 HSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRSKE 295 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 157/300 (52%), Gaps = 9/300 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + + ++ + +YL++ER S T Y L ++ F +E + ++R + Sbjct: 1 MESVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSA 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 G +LA R SA+++F W V + + ++PA + PKA R LP + D Sbjct: 61 QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120 Query: 123 LDIDIN-----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 LD + DPLA+RDR ++E++Y G+R+SEL GLDI +D + V+GKG K+R Sbjct: 121 LDAANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQR 180 Query: 178 RLPIGRNAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P G A + WL R + + AL L G+R+ R + E Sbjct: 181 TVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGA 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+LE DLR VQELLGH+ L+TTQ+YTH+ L +V+D AHPRA Sbjct: 241 PDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 162/303 (53%), Gaps = 15/303 (4%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS---WQQCDVTMVRNFAVRSRRK 66 R++ +L ER LS T+ Y L+ + + Q D +R + K Sbjct: 24 RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALH-K 82 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI- 125 S A +LS LRSF+ +L + ++ NPA V+ PK +P + VDD+ LLD Sbjct: 83 TRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSL 142 Query: 126 ------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 R+ A+ E MY G+R+SEL G+D +D G V V+GKGSKER + Sbjct: 143 NAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIV 202 Query: 180 PIGRNAVAWIEHWLDLRDLFGSE----DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 P+G A+ ++ +L + D E ALF + G+R++ R+V + + GL Sbjct: 203 PVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQ 262 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 H+ PH LRH+FATH+L S DLR +QE+LGH+NLSTTQ YTH+ L VYDAAHPR++ Sbjct: 263 HLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRSR 322 Query: 296 RGK 298 R + Sbjct: 323 RDR 325 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 116/293 (39%), Positives = 170/293 (58%), Gaps = 4/293 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 V+ +L ++ + SP T+ +Y + LEA + + G+ VR A Sbjct: 7 DAVKVFLDDAAL--RFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHASDLLA 64 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 KG +S+A RLS LR+F + + ++ AK V PK R LP+ + +++ L+D Sbjct: 65 KGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDH 124 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 + +D +A+RDRA+LE +Y G+R+SE V LDI LDL +G V+GKG +ER + +GR Sbjct: 125 VGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVMVGRR 184 Query: 185 AVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 AV + +L LRD A+F+++ G R++ R+V++ + +H H LRH Sbjct: 185 AVDALRRYLPLRDRMAR-CSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHGLRH 243 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 SFATHML DLR VQELLGHA+LS+TQIYTH + LA Y AAHPRA+RG Sbjct: 244 SFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRARRG 296 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 36/326 (11%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN------GLQSWQQCDVTMVRN 58 H+ + +L+YL+ ER +S T+ Y++ L + F + S + + +R Sbjct: 11 HSQLTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRL 70 Query: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 F G + S+ +L++++SFF +LV N L A+PA V+ PKA + LP ++ Sbjct: 71 FLGELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQ 130 Query: 119 MNRLLDIDINDPLAV-----------------------RDRAMLEVMYGAGLRLSELVGL 155 L D ++ RDRA+LE+ Y GLRL+EL+GL Sbjct: 131 TQTLFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGL 190 Query: 156 DIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-------EDDALFL 208 +I LD ++G V V+GKG K+R +P+G +A ++++L+++ F E +A+F+ Sbjct: 191 NIMELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFV 250 Query: 209 SKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHAN 268 ++ GKR+ VQ+ ++ PH LRH+FATH+L + DLR V E+LGH+N Sbjct: 251 TEKGKRVYPVLVQRLVKKYLSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSN 310 Query: 269 LSTTQIYTHLDFQHLASVYDAAHPRA 294 LSTT+IYTH+ F+ L VY AHP+A Sbjct: 311 LSTTEIYTHISFERLKQVYQQAHPKA 336 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 106/298 (35%), Positives = 162/298 (54%), Gaps = 8/298 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L D+E ++ YL + LS TL Y+ L+ + ++ L+S + + Sbjct: 3 TKLTQDIELFIDYLWTQVGLSDATLSAYRGDLQQVQKILADVPLKS---ATIEQMMQVLA 59 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +G S+A S+L FF + + Q E NP + K RHLP+ + D+ Sbjct: 60 QFHDRGYSHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEA 119 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL L +RDRAMLE++Y GLR+SELVGL + + L+ G V ++GKG KER +P Sbjct: 120 LLSAPDVQTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVP 179 Query: 181 IGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN-H 236 G A W++ ++ + R + D +F+S+ G +S + R + GL++ Sbjct: 180 FGEIAHEWLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNK 239 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FA+H+L DLR +Q LLGH++LSTTQIYTH+ Q L S++ HPRA Sbjct: 240 ISPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 153/297 (51%), Gaps = 10/297 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++ YL E L+ ++ YQR + + + + V + ++ R Sbjct: 21 DRWARSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIPKL---TVRDLTDYLAFMR 77 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + L S+A + L+ F +L + +K NPA+ + K +P + RLLD Sbjct: 78 EENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLD 137 Query: 125 ID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 DPL RDRA+LE++Y G R SE+ ++++ L +E GKGSKER +P+G Sbjct: 138 APQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLGD 197 Query: 184 NAVAWIEHWLD-LRDLFGSED-----DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 A+A +E +L+ R ++ L LS G+R++ + + + ++ ++ G + Sbjct: 198 PALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPASM 257 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+L DLR VQELLGHA++ TTQIYTH+D L ++ HPRA Sbjct: 258 SPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 11/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 ++ + V ++LR L E+ S T+ Y LE F G W D +R F Sbjct: 3 VSQVEKGVAQFLRSLK-EKNSSVHTIKAYTTDLEEFSAFL---GPAKWDDIDHVRIRGFL 58 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 KGL S+A L+ALRS + WL + ++ NPA V+ PK P+ LP+ ++++N Sbjct: 59 SHLYDKGLSKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELN 118 Query: 121 RLLDIDINDPLAV--RDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 ++D ++ + + RD + E++YG G+R SEL G+++ + + + + GKG KER Sbjct: 119 TVMDAEMPEAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERF 178 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSE----DDALFLSKLG-KRISARNVQKRFAEWGIKQGL 233 +P G A + +L R +E +AL ++ +R+++R+V + + + +GL Sbjct: 179 VPFGDAAAVAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGL 238 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 VHPH LRH+F TH+LE DLR +QELLGH L+TTQ YT L +H+ VYD HPR Sbjct: 239 PADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPR 298 Query: 294 AK 295 AK Sbjct: 299 AK 300 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 94/308 (30%), Positives = 164/308 (53%), Gaps = 12/308 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + YL Y+ + + T+ +Y L + + ++ + D + V++F Sbjct: 2 KLTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEY 61 Query: 63 SRRKGL-----------GAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 R+ +AS+ +++L F +L NP + + KA +HLP Sbjct: 62 LRQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLP 121 Query: 112 KNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 ++ D+ RLLD + + D+A++E++YG GLR+SE L ++ + LE G + V+G Sbjct: 122 VYFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIG 181 Query: 172 KGSKERRLPIGRNAVAWIEHWL-DLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIK 230 KG+KER +P+ +E++L +R + + +F++ G+ I+ + + + + Sbjct: 182 KGNKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLA 241 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 GL+ + H RHSFA+H+L+ DLR VQELLGH+++STTQIYTH+ + L SVY + Sbjct: 242 LGLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSF 301 Query: 291 HPRAKRGK 298 HPRAK+ K Sbjct: 302 HPRAKKHK 309 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 135/294 (45%), Positives = 178/294 (60%), Gaps = 6/294 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + R++ +L+V SP TL Y+ +E + N + +R + Sbjct: 1 MDEAIRRFIEHLAVA-GRSPHTLAAYRADIELLENMMQAKSARD---ATAAELRKALAKL 56 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +GL + SLA RLS+ R F+ WL E + NPA G+ APK + LPK + VD LL Sbjct: 57 HAQGLSSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALL 116 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D I+ L RDRA+ E++Y GLRLSE V L++ +D + + GKG KER +PIG Sbjct: 117 DRIEGESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIG 176 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 A+ + WL R G ++ ALFL + G R+ R V+KR +W IK G HVHPH L Sbjct: 177 AEAMLRLRTWLGERSA-GMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHML 235 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFA+HML+SSGDLR VQELLGHANLS+TQIYT LDFQHLA VYD AHPRA++ Sbjct: 236 RHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARK 289 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 130/305 (42%), Positives = 178/305 (58%), Gaps = 11/305 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA---SENGLQSWQQCDVT-----M 55 L + + YL YLS R LS T +Y+R L A++ ENG +T Sbjct: 13 LPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHD 72 Query: 56 VRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 +R+F R GL SLA LSA R F+ +L+ + NP V PK+P LP + Sbjct: 73 IRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALS 132 Query: 116 VDDMNRLL--DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 D+ +LL + ND LA RD A+ E+ Y +GLRL+EL L +D G V V GKG Sbjct: 133 PDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKG 192 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 +K R +P+G A+ ++ WL LR + ALFLS+ G+RI R + R + Q Sbjct: 193 NKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTIAYRLHQRAQLQN 252 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L++ VHPH LRHSFA+H+L+SSGDLR VQE+LGH+++ +TQ+YTHLDFQHLA +YD AHP Sbjct: 253 LDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHP 312 Query: 293 RAKRG 297 RA++ Sbjct: 313 RARKK 317 >UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desulfovibrio RepID=Q311L4_DESDG Length = 332 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 166/315 (52%), Gaps = 19/315 (6%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG--LQSWQQCDVTMVRNFA 60 L E Y+ YL++E+ S T+ Y L +F L + + +F Sbjct: 14 PLPDTAEMYMGYLALEKGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFL 73 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+ +G +S+ +LSALR FF +L + +++ P +G++ P+ + P+ ++VD Sbjct: 74 ADLHRQHVGKSSMGRKLSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAY 133 Query: 121 RLLDI--------------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 +LD RD A+ E++YG+GLR+SE + LD+ H D SG Sbjct: 134 AVLDTRTQAASRAQVHVRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGL 193 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKR 223 + V GKGSKER +P+ + ++ WLD+R+ G + A+FL G R++ R + Sbjct: 194 IKVTGKGSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRI 253 Query: 224 FAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 283 + GL V PH LRHSFATH+LE+ D+R VQELLGH L+TTQ YTHL + + Sbjct: 254 IEDLCRAAGLPQAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKI 313 Query: 284 ASVYDAAHPRAKRGK 298 VYD AHP +K GK Sbjct: 314 VEVYDRAHPGSKAGK 328 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 346 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 153/296 (51%), Gaps = 2/296 (0%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D ++ +L Y+ + R S T Y+R +E I + + + +W++ D + + Sbjct: 2 DYKKSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTT 61 Query: 63 SRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R+K L +S LS+LRSFF +L + NP K R LP+ + VD + Sbjct: 62 LRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQD 121 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LLD D+ D +R+R ++E++Y GLR+SE + I+ + V VMGK SKER +P Sbjct: 122 LLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVP 181 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 + + +L F D F GK IS R++Q + G + L +HPH Sbjct: 182 FYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L++ DLR VQ LLGH NLSTTQIYTH+ L V HP + + Sbjct: 242 VLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLSHK 297 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 183/316 (57%), Gaps = 25/316 (7%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQ-----QCDVTMVRNFA 60 ++R+ +L ER+LS T Y+R LEA F +E + Q D + F Sbjct: 4 PYLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFL 63 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R R+GL ++ R++ALR++F+++ + + NPA VS+PKAP+ LP+ V+ Sbjct: 64 GRGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTL 123 Query: 121 RLLDIDINDPLA----------------VRDRAMLEVMYGAGLRLSELVGLDIKHLDLES 164 LLD PL+ +RD A+LE++Y AGLR+SE LD +DL Sbjct: 124 NLLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRG 183 Query: 165 GEVWVM-GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDA---LFLSKLGKRISARNV 220 GE+ V GKG K+R +P+GR AVA IE WL R + D +F +LGKR+++R Sbjct: 184 GELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREG 243 Query: 221 QKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 280 Q+ +W + L V PH LRH+FATH+L++ DLR +QE++GHA+LS TQ YTHLD Sbjct: 244 QRLLEKWRARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDM 303 Query: 281 QHLASVYDAAHPRAKR 296 Q LA VYDAAHPRA+R Sbjct: 304 QALAKVYDAAHPRAQR 319 >UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriaceae RepID=C8WGZ0_EGGLE Length = 323 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 149/302 (49%), Gaps = 14/302 (4%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 ++ + + VER S TL Y+ L +A + +R + R Sbjct: 23 ELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERI-DILAATHRQLRRYLGELDR 81 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL-- 123 ++ RLSALRSFF WL +PA + PK P+ LP I DM +LL Sbjct: 82 AQYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTV 141 Query: 124 ----DIDINDPL----AVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 D + R+ A+LE +Y G R+SE GL ++D SG+V V GKGSK Sbjct: 142 YGKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSK 201 Query: 176 ERRLPIGRNAVAWIEHWLD-LRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQG 232 ER +P+ AV+ + + R L + D F+S G R+ ++K F + + G Sbjct: 202 ERIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAG 261 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L+ + PH +RH+FAT +L+ DLR VQE+LGHA+LSTTQIYTHL L V+ HP Sbjct: 262 LDESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHP 321 Query: 293 RA 294 R Sbjct: 322 RG 323 >UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax=Bifidobacteriaceae RepID=D2RA91_GARVA Length = 322 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 150/305 (49%), Gaps = 18/305 (5%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 + ++ Y+ Y+ + L T Y + + + + +G + + +R++ R Sbjct: 20 SLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESR 79 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 +SLA ++ A+R FF W + NPA+ + K LP +D L++ Sbjct: 80 SH-ARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMNN 138 Query: 125 -----------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 + +R+ A+LE++Y G+R+ EL L+I+ ++ S + V GKG Sbjct: 139 VDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKG 198 Query: 174 SKERRLPIGRNAVAWIEHWL--DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGI 229 +K+R +P G A + W+ D R++ ++A+FL GKRI R V++ + Sbjct: 199 NKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAK 258 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + + PH LRHS ATHML DLR VQELLGH++L+TTQ YTH+ + L Y Sbjct: 259 SAHVP-DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQ 317 Query: 290 AHPRA 294 A PRA Sbjct: 318 AFPRA 322 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 346 bits (888), Expect = 6e-94, Method: Composition-based stats. Identities = 104/289 (35%), Positives = 161/289 (55%), Gaps = 6/289 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 V ++R++++ S T + Y+R + ++F + + D M ++ Sbjct: 4 EELVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAVH---EVDRLMAYDYLNMLY 60 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 L ++S+A ++S LRSF+ +L L NP + + + RHLP + D++ LL Sbjct: 61 DSNLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLL 120 Query: 125 IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 L VR++ M+E+MY GLR+SE+V L I LDL + V+GKG+KER+L + Sbjct: 121 SCDESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYES 180 Query: 185 AVAWIEHWLDL-RDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 V + +L+L R F S+ +A+FL++ GK ++ R +Q G GL +HPH Sbjct: 181 LVPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHM 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 LRHSFATH+L++ LR VQ LLGH +LSTTQIYTH+ Q + VYD A Sbjct: 241 LRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 30/319 (9%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS------WQQCDVTMVRNF 59 +E +L +L R +SP T+ Y+ L +F E ++ +V VR F Sbjct: 18 RWLEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLF 77 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 KG+ S+A +L++++SF+ +L+ + ++P V P+ + +P+ + ++ Sbjct: 78 MGHLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEA 137 Query: 120 NRLL-----------------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDL 162 +L ++ RDRA+LEV+YG GLRLSEL+ L+ +DL Sbjct: 138 RQLFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDL 197 Query: 163 ESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-------EDDALFLSKLGKRI 215 G + V GKG K+R +P+G AV + + ++R F E +F++ G+++ Sbjct: 198 VHGFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQL 257 Query: 216 SARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIY 275 VQ+ + + +PH LRHSFATHML DL+ V E+LGH++L+TT++Y Sbjct: 258 YPMLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELY 317 Query: 276 THLDFQHLASVYDAAHPRA 294 TH+ F L +YD AHP A Sbjct: 318 THVTFSRLKEIYDKAHPGA 336 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 18/308 (5%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG--LQSWQQCDVTMVRNFAVRSR 64 ++E +L +L V+R LSP T + Y L + F ++ G L + ++ + R Sbjct: 21 EIESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLY 80 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +++A +L+A R+FF + + N A V PK + P+ ++VD +LD Sbjct: 81 ALGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLD 140 Query: 125 ID--------------INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 D LA RD A+ E++YG+GLR+SE +GLD+ L L+ V V Sbjct: 141 TPDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVF 200 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGI 229 GKG++ER P+ +V + WL+ R E + ALF+ G R+ R +R Sbjct: 201 GKGARERMSPLSDTSVTALRAWLEQRGTLAPEGEKALFVGARGGRLDRREAMRRIERLCR 260 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 G+ V PH LRHSFATH+L++ DLR VQELLGH L+TTQ YT + + L +YD Sbjct: 261 NAGVE-PVSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDE 319 Query: 290 AHPRAKRG 297 AHPRA++ Sbjct: 320 AHPRAQKK 327 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 345 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 86/294 (29%), Positives = 166/294 (56%), Gaps = 5/294 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +E+Y + ++ LS T+ Y+R ++ F E G + ++ DV + ++ Sbjct: 1 MDNLIEQYFAEIR-KKNLSLNTIDAYRRDIKKFHEFLDEKG-EKLREVDVITIMSYVQYL 58 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++ G +S+ + ++R+FF +L + + NP PK R+ P + ++++ +LL Sbjct: 59 QKNGRANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLL 118 Query: 124 -DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D N +RD+AMLE+MY G++++EL+ L I ++L+ + G +KER +P+G Sbjct: 119 MGPDGNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMG 178 Query: 183 RNAVAWIEHWLDLRDLFGSED-DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 AV +E +L +R ++ D LF + G +++ + K ++ + G+ ++ + Sbjct: 179 SYAVKCLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYT 238 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ-HLASVYDAAHPRA 294 LRHSFA H+L++ D++ +QELLGH++++TTQIY+ + + +A VY HPRA Sbjct: 239 LRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 345 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 92/294 (31%), Positives = 143/294 (48%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++ + L +E L+ +L Y+R L + ++ V + Sbjct: 17 QAQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARH 76 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +S RL+ L+ F+ + QN + +P + + K P +PK + + LL Sbjct: 77 EVTKATSS-NRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA 135 Query: 125 IDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 PL +RDR MLE+MY +GLR++ELV L + + G + + GKG K R +P G Sbjct: 136 APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGE 195 Query: 184 NAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A WIE +L R L DDALF++ G ++ + + +N + PH Sbjct: 196 EARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPH 255 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FATH+L DLR VQ LLGH+++STTQIYTH+ + L ++ HPR Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 110/300 (36%), Positives = 160/300 (53%), Gaps = 9/300 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + T +E + RYL +ER S T Y L ++ F E + M+R++ Sbjct: 1 MDTVLEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAA 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 G ++LA R S++++F W V + + +PA + PKA R LP + D Sbjct: 61 HAAAGTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDA 120 Query: 123 LDIDIN-----DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 L+ + DPLAVRDR ++E++Y G+R+SEL GLD+ +D + V+GKG+K+R Sbjct: 121 LEAAESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQR 180 Query: 178 RLPIGRNAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P G A A + WL R + D AL L GKR+ R + + G Sbjct: 181 TVPYGEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGA 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+LE DLR VQELLGH++L+TTQ+YTH+ L +V+D AHPRA Sbjct: 241 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 173/302 (57%), Gaps = 11/302 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + +L+ + + S T+ YQR L NF L + + + +R + Sbjct: 12 EKLLSMWLKE-RIIQNQSEHTIEAYQRDLTDFFNFCDSKSL-ALYDIEASDLREYLANRV 69 Query: 65 RKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 K L ++SL L+++R F W L+ NP++ + PR LP +D++ ++++L Sbjct: 70 EKDQLSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQIL 129 Query: 124 DIDINDP-----LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 D D L +RD+A+LE++Y +GLRL+EL GL IK +D + + GKG+K R Sbjct: 130 DQAPPDKPIEQQLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRI 189 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 +P G+ A + WL + ++ E D A+F+S+ G R++ R ++ R + G+N Sbjct: 190 VPFGQKAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNV 249 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 +HPH LRH FA+HML +SGDLR VQE+LGH+NLSTTQIYTH+DF LA VYD HPRA+ Sbjct: 250 DLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRAQ 309 Query: 296 RG 297 + Sbjct: 310 KD 311 >UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IL8_THICR Length = 317 Score = 344 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 135/321 (42%), Positives = 196/321 (61%), Gaps = 29/321 (9%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINF---------ASENGL------ 45 M+D +++ L +E S T+ NYQR L ++ F E L Sbjct: 1 MSDYQRFIKQ----LKLE-NKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAW 55 Query: 46 ------QSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAK 99 WQ + +++ F ++G+ A S+A +LSA+R+F+ +L+ Q NPAK Sbjct: 56 AFLDQFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAK 115 Query: 100 GVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIK- 158 G+ APK P+ LPK++DVD +LL+ + VRD+A+ E++Y GLR+SELV LD+ Sbjct: 116 GLKAPKQPKALPKSLDVDLTRQLLEQPLKTWQDVRDQAIFEILYSGGLRVSELVELDLSP 175 Query: 159 HLD-LESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKLGKRIS 216 LD L SG V V+GKG KER P+G+ A + WL++R + + A+F+++ GKR+ Sbjct: 176 GLDGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLG 235 Query: 217 ARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT 276 R++Q + + ++ GL + PH+LRH+ ATH+LESSGDLR VQE+LGHANLSTTQIYT Sbjct: 236 VRSIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYT 295 Query: 277 HLDFQHLASVYDAAHPRAKRG 297 LD QHLA+VYD AHPRAK+ Sbjct: 296 KLDLQHLATVYDKAHPRAKKK 316 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 344 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 122/301 (40%), Positives = 183/301 (60%), Gaps = 8/301 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----WQQCDVTMVRNF 59 + YL + E S T+ Y+R LE + ++ ++ Q Sbjct: 35 FAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAA 93 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 R ++GL A +LA +LS+ R + WLV + + A+P G+S PK P+ +PK + + + Sbjct: 94 LRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWL 153 Query: 120 NRLLDIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 NR+LD+ ++ DPLAVRD A+ E+MYG+GLR+SE+ GL+ + L+ V V GKG K+R Sbjct: 154 NRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQR 213 Query: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 ++P+ + ++++L LR S+ ALF + G R+S R +QKR A+W G HV Sbjct: 214 QVPLTGKSAEALKNYLPLRQT-ASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHV 272 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH +RHS+A H+L++S D+R VQELLGH++LSTTQIYT LDF H+A +YD AHPRAKR Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332 Query: 298 K 298 + Sbjct: 333 E 333 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 344 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 162/300 (54%), Gaps = 5/300 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ ++ +L +L VER LSP+T+ +YQ L I + ENG+ + + F Sbjct: 1 MSLNSNRLDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGI-DLKDLQPEKLDEFL 59 Query: 61 VRSR-RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + ++ S+A S+LR F ++ Q E + ++ PK +LP+ + +++ Sbjct: 60 TLTAGQEEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEI 119 Query: 120 NRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + + N +RD A++E+MY GLR+SE +G+ + +DLE+ + +GKG+K+R + Sbjct: 120 DSVFESAANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLV 179 Query: 180 PIGRNAVAWIEHWLDL-RDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 P+G A + W++ R L D + L+ GK +S K L+ V Sbjct: 180 PLGSKAKENLRAWIEEGRPLTHPTTDNIILNAHGKPMSRMGAWKIVQ--LHTMHLSKQVS 237 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 PH RHSFATH LE+ DLR +QELLGHA++STTQIYTH+D + + + HPR GK Sbjct: 238 PHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPREMGGK 297 >UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019772C5 Length = 334 Score = 344 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 155/331 (46%), Gaps = 45/331 (13%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 D+ +L YL R LS T+ Y + ++ + G+ +Q +R + R Sbjct: 6 DLSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRD 65 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 +S+A ++ ++RSFF W ++A+PA + PK P LP + RL+D Sbjct: 66 H-ARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRV 124 Query: 127 INDP-----------------------------------LAVRDRAMLEVMYGAGLRLSE 151 +D +A+RD AMLE++Y G+R++E Sbjct: 125 DDDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAE 184 Query: 152 LVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLFGS-------ED 203 LVGLDI +D + V GKGSK+R +P G A + W + R L + Sbjct: 185 LVGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDT 244 Query: 204 DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQEL 263 ALFL G+RI R V+ + G+ + PH LRHS ATHML+ DLR VQE+ Sbjct: 245 AALFLGMRGRRIDQRIVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQEM 303 Query: 264 LGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LGH++L TTQ YTH+ + L Y A PRA Sbjct: 304 LGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 162/296 (54%), Gaps = 5/296 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + +Y +YL +E+ LS T+ Y L+ ++ + + + + + + +F+ Sbjct: 8 DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENI-NILDVRLENLEDFSAGLH 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL- 123 G+ S A LS +RSF+ +L+ ++ LKA+P + + +P+ LP+ + V++++ L+ Sbjct: 67 DIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIG 126 Query: 124 DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 ID + R+RA+LE +Y GLR+SEL L + L E G + V GKGSK+R +PI Sbjct: 127 SIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISP 186 Query: 184 NAVAWIEHWLDLRDLFGSE---DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A+ I + R+L + +D +F+S GK IS V E + GL + PH Sbjct: 187 RAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLKKKISPH 246 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RHSFATH+LE +LR +Q +LGH ++ TT+IYTH+D L S HPR + Sbjct: 247 TFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNIK 302 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 102/299 (34%), Positives = 161/299 (53%), Gaps = 8/299 (2%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQ--CDVTMVRNF 59 ++L + YL L+ S ++ Y+ L + F S L D+ ++R + Sbjct: 7 SELERQIVLYLEDLARA-GNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLILREW 65 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 R L A +L +L+A+R F +L+ + + N A V PKAP+ LP+ + D + Sbjct: 66 LAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQV 125 Query: 120 NRLLD----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 N L+D +++ P RDRA+ E++YG G+R+SEL GL+++ +D G + V GKG K Sbjct: 126 NSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRGKGKK 185 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 ER++P+ A +E +L R E A+F++ R++ R + + + Sbjct: 186 ERQVPLPGQAAQSLERYLAERP-VAREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDP 244 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 +HPH RH++ATH+L DLR +QELLGHA LSTTQ YT + L +VYD AHP+A Sbjct: 245 GIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHPKA 303 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 180/306 (58%), Gaps = 12/306 (3%) Query: 2 TDLHTDVERYLRYLSVER--QLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNF 59 ++L ++ +L + S T+ Y+R +++ + F + + + + +R + Sbjct: 3 SNLDFALQLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKV-DLRNVEASDLREY 61 Query: 60 AVRSRRKG-LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118 + + L ++S+ L+++R F W L+ NP + PR LP ID++ Sbjct: 62 LAQRVEQDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIET 121 Query: 119 MNRLLDID-----INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKG 173 +N++LD ++ L +RD+AMLE++Y +GLRL+EL GL IK +D V + GKG Sbjct: 122 VNQILDQPMPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKG 181 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFG---SEDDALFLSKLGKRISARNVQKRFAEWGIK 230 +K R +P G+ A + +WL + +++ ++ ++F+S+ G ++ R ++KR + Sbjct: 182 NKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQR 241 Query: 231 QGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAA 290 G+N +HPH LRH FA+HML SSGDLR VQE+LGH+NLSTTQIYTH+DF HLA VYD A Sbjct: 242 AGVNVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQA 301 Query: 291 HPRAKR 296 HPRA + Sbjct: 302 HPRATK 307 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 163/305 (53%), Gaps = 17/305 (5%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 + +L +L +ER L+ ++ Y+R L F G +S + D + +F + Sbjct: 7 NFDVATSSFLNHLQIERGLAANSIAAYRRDLVKFSIFL---GSKSLSEVDSNAINDFEIS 63 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R L AS+ S LRSFF L + A+P ++ K+ R LPK + + + + Sbjct: 64 LREAKLSVASINRVDSTLRSFFKHLQQE-YGYADPTLEIAPQKSARRLPKALTISQIVSM 122 Query: 123 LDIDIND--PLAVRDRAMLEVMYGAGLRLSELVGLDIKH---LDLESG---EVWVMGKGS 174 +D+ + P+ RD+AMLE++Y +G R+SEL+G+++ +D G + + GKG+ Sbjct: 123 IDVAYREGQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGA 182 Query: 175 KERRLPIGRNAVAWIEHWL-DLRDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGI 229 KER +P+G A +E++L +R S+ ALFL+ G RIS ++ + + Sbjct: 183 KERIVPLGSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAAD 242 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 G+ HV PH RHS+ATH+L D+R VQELLGHA+++TTQIYT + + Y Sbjct: 243 AAGITEHVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYAL 302 Query: 290 AHPRA 294 HPRA Sbjct: 303 THPRA 307 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 108/295 (36%), Positives = 173/295 (58%), Gaps = 4/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG-LQSWQQCDVTMVRNFAVR 62 L +E++L + V S T+ Y++ + I++ S N + + + +V VR+F Sbjct: 10 LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAY 69 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 S +G S+ ++SALR+FF +L QN ++AN V+ PK + LP + DD+N+L Sbjct: 70 SNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKL 129 Query: 123 LD-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 + IDI+ +RDR ++E +Y +GLR SELV L ++LE EV V+GKG+KER Sbjct: 130 RNVIDISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFF 189 Query: 182 GRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 NA W E ++ + + +F++ G+RI+ R++++ A++ K G+N V P Sbjct: 190 SENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTP 249 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H RHSFAT +L + D+R +QELLGH+++STTQ+YTH+ L +Y AHP A Sbjct: 250 HVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLA 304 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 171/306 (55%), Gaps = 15/306 (4%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T VE +L+YL ER S T Y L +N+A L W++ ++ + F + Sbjct: 1 MQTLVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFE 60 Query: 64 RRK-----------GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 R + L + S+ L ++ALR+F+ + ++ L N A+ +S P+ + LPK Sbjct: 61 RERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPK 120 Query: 113 NIDVDDMNRLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 + ++ +LL ++ P + D+A+LE+ Y +GLRL+EL + ++ L LE G + V+G Sbjct: 121 ALSDLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIG 180 Query: 172 KGSKERRLPIGRNAVAWIEHWLDL-RDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWG 228 KG+KER +P+G AV ++ +L+ R + +FL+ G +A + KR + Sbjct: 181 KGNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRV 240 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 + G+ +V PH LRHSFATH+LE DLR +QELLGHAN+STT+IYTH+ L V+ Sbjct: 241 KRSGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHR 300 Query: 289 AAHPRA 294 HPR Sbjct: 301 KFHPRG 306 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 113/296 (38%), Positives = 169/296 (57%), Gaps = 11/296 (3%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFAVRSRRK 66 + + YL+ ER+ S T+ NY++ E + G+ + + + +R+F + ++R+ Sbjct: 30 QPFENYLAHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIEAQRR 89 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 G +L +S LRSFF + + + +++ NP GV PK + LPK + + M RLL Sbjct: 90 -FGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGP 148 Query: 127 I--------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 + A RDR +LE++YGAGLR+SEL GL+ +DLE+G ++GKG KER Sbjct: 149 QQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERL 208 Query: 179 LPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 PIGR AVA + + D + D + +++ G R+S R VQ + L + Sbjct: 209 CPIGRVAVAVLRKFRDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAELPMDLT 268 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PHKLRHS+ATH+L + DLR VQELLGHA L+TTQ+YTH+ L +Y AHPRA Sbjct: 269 PHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD80_THET1 Length = 310 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 91/284 (32%), Positives = 164/284 (57%), Gaps = 11/284 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNF 59 M D + VE ++ +L ER S T Y+ + ++ + SW + ++++ Sbjct: 1 MFDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDY 60 Query: 60 AVRSR---RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 + + + ++ A +++A++SFF +LV+++ + NPA + +P+ ++ PK I V Sbjct: 61 LLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISV 120 Query: 117 DDMNRLLDI--DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 ++N LL D P +RDRAMLEV+Y GLR+SELV L++ ++L+ + +G+G Sbjct: 121 QEVNMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRG- 179 Query: 175 KERRLPIGRNAVAWIEHWLD-LRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQ 231 K R++P+ + AV ++ +L+ R L G ++ ALF++ G+R++ + + + Sbjct: 180 KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEA 239 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIY 275 G+ + PH LRHSFA HM++ DLR VQE LGHA+++TTQ+Y Sbjct: 240 GI-KGITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282 >UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales RepID=XERC_CHLFF Length = 312 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 90/306 (29%), Positives = 155/306 (50%), Gaps = 21/306 (6%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQ------------------C 51 +L YL + SP TL NY L + F ++G S Sbjct: 7 AFLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLF 66 Query: 52 DVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 VR + + ++ ++ RLSA++SF + + L +P + + P+ P+ LP Sbjct: 67 TKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELP 126 Query: 112 KNIDVDDMNRLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 I + + L+ + +RDR +LE+ Y +GLR+SE+V L+ +D S + + Sbjct: 127 SPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIR 186 Query: 171 GKGSKERRLPIGRNAVAWIEHWLD--LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWG 228 GKG KER +PI A W++ +L+ R + A+FL+ G R++ R++ ++F ++ Sbjct: 187 GKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKYL 246 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 GL+ ++ PH +RH+ ATH LE+ DL+ +Q LLGH++L TT IYTH+ + ++ Sbjct: 247 RLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHN 306 Query: 289 AAHPRA 294 +HP Sbjct: 307 ESHPHG 312 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 156/300 (52%), Gaps = 9/300 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M + V + ++ E L+ ++ Y + +E I F L+ +C + + Sbjct: 1 MDN-AKLVSNFTNWMQYEMGLAENSVKAYHQDIENYIAF----TLKPLVECGAQELVAYM 55 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R+ G ++ R+S + F+D+L+ + + +NP VS P LP ++ D++ Sbjct: 56 THLRKSGASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVE 115 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +L++ + L RDR + E MY G+R+SELVGL + +D+ + V GKGSK+R + Sbjct: 116 KLINSPDMSSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFV 175 Query: 180 PIGRNAVAWIEHWLDLRDL---FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+ + ++ +LD+R ++ LFLS+ GK++ V ++ + G+ + Sbjct: 176 PMYGSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKN 235 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 V PH LRHSFATH+L + DLR +Q LLGH +LSTT+ YT + + HPR ++ Sbjct: 236 VSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPRFRK 295 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 167/302 (55%), Gaps = 13/302 (4%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + +L YL VE+ LS +++ Y + ++ F ++ +S VR+F Sbjct: 8 DRLLRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRK-RSLDAAKRQDVRDFLDSLF 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN---- 120 L ++A +LS+ R F+ +L+ ++ +P + +P+ + LPK++ D++ Sbjct: 67 SNQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQ 126 Query: 121 ---RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKER 177 R+LD + LA+RDRAMLEV Y LR+SE++G+ ++ L+ G + V GKG KER Sbjct: 127 GPPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKER 186 Query: 178 RLPIGRNAVAWIEHWLDLRDLF---GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 +P+G++A+ ++ +L+ G LF+ K +++S + V + + G Sbjct: 187 IVPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASG-- 244 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H PH LRHS ATHM+E+ DLR VQ +LGHA++STTQIYTHL L V+ HPR+ Sbjct: 245 RHASPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRS 304 Query: 295 KR 296 KR Sbjct: 305 KR 306 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 160/295 (54%), Gaps = 3/295 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 +T+ + L+ L++ R SP T +Y+ L ++ ++ S Q D + ++ Sbjct: 5 VTENEEMITGLLQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHH-TSLMQADGKAILDYL 63 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + R G+ ++ R SAL ++F WL QN + +PA+ + + R LPK + D+ Sbjct: 64 AKLGRDGMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVE 123 Query: 121 RLLDID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 RLL DP+ +RDR MLE++Y G+R+SELV L +++++G + V+GKG KER + Sbjct: 124 RLLAAPETEDPVGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLI 183 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P G A W++ WL LR LF + G ++ +N R + G+ P Sbjct: 184 PFGEEAGQWLQQWLLLRPA-KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSP 242 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+FATH+L DLR VQ LLGHA+++TT+IYTH+ + + + +HP Sbjct: 243 HTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHPLG 297 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 173/316 (54%), Gaps = 21/316 (6%) Query: 1 MTD--LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRN 58 MT L T ++ YL YL +ER ++ TL +Y+R L S+ G++ + V Sbjct: 1 MTTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSE 60 Query: 59 FAVRSRRKG-------LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 F V RR L A S A L A+R + V++ + + A+ V P R LP Sbjct: 61 FLVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLP 120 Query: 112 KNIDVDDMNRLLDIDI-----NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 K++ VD++ LL+ + PL +R+RA+LE++Y G R+SE VGLD+ +D ++ Sbjct: 121 KSLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQART 180 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWL-------DLRDLFGSEDDALFLSKLGKRISARN 219 V + GKG K+R +P+GR AV ++ +L R A+FL+ G R+S ++ Sbjct: 181 VLLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQS 240 Query: 220 VQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLD 279 + + G+ + V PH LRHSFATH+LE D+R VQEL+GHA+++TTQIYT + Sbjct: 241 AWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVT 300 Query: 280 FQHLASVYDAAHPRAK 295 Q L V+ AHPRAK Sbjct: 301 VQALREVWAGAHPRAK 316 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 121/302 (40%), Positives = 180/302 (59%), Gaps = 8/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----WQQCDVTMV 56 + + YL + E S T+ Y+R LE + ++ + Q Sbjct: 3 LDGFAAHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDF 61 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R ++GL A +LA +LS+ R + WLV + L +P + PK P +PK + Sbjct: 62 TAALRRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQ 121 Query: 117 DDMNRLLDIDIN--DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 + +NR+LD+ ++ DPLAVRD A+ E+MYG+GLR+SE+ GL+ + L+ V V GKG Sbjct: 122 EWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGR 181 Query: 175 KERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLN 234 K+R++P+ +V ++++L LR S+ ALF + G R+S R +QKR A+W + G Sbjct: 182 KQRQVPLTGKSVEALKNYLPLRQT-ASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDG 240 Query: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HV PH +RHS+A H+L++S D+R VQELLGH++LSTTQIYT LDF H+A +YD AHPRA Sbjct: 241 RHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 300 Query: 295 KR 296 KR Sbjct: 301 KR 302 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 160/308 (51%), Gaps = 20/308 (6%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS----------WQQCDVTM 55 + +L YL+ ER+ S T+ NY++ E + +GL+ + Sbjct: 23 EWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRD 82 Query: 56 VRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNID 115 +R+F + +R+ +L +S LRSF+ + + + NP G++ PK + LPK + Sbjct: 83 LRDFVIEGQRR-FDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLT 141 Query: 116 VDDMNRLLD---------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGE 166 M LL DI A RDR +E++YG GLR+SEL LD +D SG Sbjct: 142 EQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSELTALDYGQIDFTSGV 201 Query: 167 VWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAE 226 V+GKG KER P+G+ A+A + W + S + ++ +R+ R VQ Sbjct: 202 ARVLGKGRKERLCPLGKVALAVLVKWKNEYARDTSPAAPVLVTPEHERMPVRQVQLMLKR 261 Query: 227 WGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASV 286 + GL + PHKLRHS+ATH+L + DLR VQELLGHA+L+TTQIYTH+ L + Sbjct: 262 YLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDI 321 Query: 287 YDAAHPRA 294 YD AHPRA Sbjct: 322 YDKAHPRA 329 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 162/291 (55%), Gaps = 4/291 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 + ++ YLS+ER LS T+ Y L + + + + + + N+ + + Sbjct: 2 LAQFKLYLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRE 61 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-D 126 L ++++ RL L+ FF +L + + + + + + + R LP + + ++ RLL I D Sbjct: 62 LNDSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYD 121 Query: 127 INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 PL R++ ++E++Y GLR+SEL GL + ESG + V GKGSKER +P G Sbjct: 122 EAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVA 181 Query: 187 AWIEHWLD-LRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLR 243 + ++ +R +++ L +S G+ ++ V + E IK +N ++HPH LR Sbjct: 182 SMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLR 241 Query: 244 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 HSFA+H+L ++ DLR +QELLGHA+++TT+IYTH++ L +++ PRA Sbjct: 242 HSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 114/291 (39%), Positives = 170/291 (58%), Gaps = 7/291 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS-WQQCDVTMVRNFAVRSRRKG 67 E++L YL ER SP T+L YQ+ L A F ENG W Q + + + + Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLA-TGQK 63 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 L +++L+ +LS+L+SF+ +L + +KA+P + + + LP+ D++ +++ Sbjct: 64 LASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLN 123 Query: 128 N-DPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAV 186 + PL VR+RA++ + Y G+RLSEL L IK LDLE+G + V GKG+K+R + + + Sbjct: 124 DGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESK 183 Query: 187 AWIEHWLDL-RDLFGSEDD---ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 ++E +L R + A+FL+KLG+ IS+R + K + K GL HPH+L Sbjct: 184 KYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHEL 243 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 RHSFAT ML + DLR VQELLGH +LSTTQIYTH+ QHL Y PR Sbjct: 244 RHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes RepID=A1ZPB9_9SPHI Length = 299 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 167/296 (56%), Gaps = 6/296 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW-QQCDVTMVRNFAVRS 63 + ++ + YL +ER LS +L Y ++ ++ GL + ++ F Sbjct: 4 QSYIKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYL 63 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + G+ A+S A LS +++F+ +L+ + ++ +P+ V P+ R +P + + ++ LL Sbjct: 64 AKLGIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLL 123 Query: 124 D-IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 ID++ P R+RAM+EV+Y +GLR++EL+ L I +L L+ G + ++GK +KER +PIG Sbjct: 124 AVIDLSTPEGARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIG 183 Query: 183 RNAVAWIEHWLD-LR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 R A ++ +++ +R + + +D +FL++ G +IS V E + + ++ Sbjct: 184 REAARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNIS 243 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH RHSFATH++ +++ VQE+LGH N++TT+IY LD L HPR+ Sbjct: 244 PHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPRS 299 >UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales RepID=A6TR58_ALKMQ Length = 294 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 174/295 (58%), Gaps = 5/295 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + + ++ YL E+ LS TL +Y+R ++ ++ + + + ++ T + + Sbjct: 1 MDILINNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 +++G A++++ L++LRSF+ +L+ ++ +P + +PK + P + ++++ LL Sbjct: 61 QKEGRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLL 120 Query: 124 DIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 +N P +RD+AMLE++Y G+R++EL+ L+++ +++ G + +KER +PIG Sbjct: 121 QQPLNTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCC-NNTKERVIPIG 179 Query: 183 RNAVAWIEHWLDL-RDLFGSEDD--ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 ++ ++ +++ RD F +++ +LFL+ G R++ + K + + + + P Sbjct: 180 TLSLIALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH++E+ DL+ VQE+LGH+++STTQ+Y L + VY+ HPRA Sbjct: 240 HTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 174/351 (49%), Gaps = 60/351 (17%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW--QQCDVTMVRNFA 60 D + R+ YL ER S T Y R L E Q V +R Sbjct: 12 DWQRWLARFDDYLRTERGGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHL 71 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 + A++A +LSALRSFF +LV + L NPA+GV +PK + LP+ +DVDD Sbjct: 72 AGLYERNDA-ATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAF 130 Query: 121 RLLDIDIN----------------------------------------------DPLAVR 134 RL++ +PL +R Sbjct: 131 RLIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLR 190 Query: 135 DRAMLEVMYGAGLRLSELVGLDIKHLD---LESGEVWVM-GKGSKERRLPIGRNAVAWIE 190 DRA+ EV+YG+GLR+ E LD+ +D L S V V GKG KER +P+GR AVA ++ Sbjct: 191 DRAIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALD 250 Query: 191 HWLDLRDLFGSED------DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 +L++R L ALFLS G R++ R+VQ+ + G PH LRH Sbjct: 251 AYLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVG-AYEATPHALRH 309 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 SFATH+L+S DLR +QELLGHA+L++TQIYT + HL +VYDA+HPRA+ Sbjct: 310 SFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRAR 360 >UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NTN2_9MICC Length = 422 Score = 339 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++R+ R+L E+ S T+ +Y LE + + G++ D +++R + Sbjct: 120 FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSL 179 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +++ R S LR+FF W + + ANP +G+ PK HLP + + MN+LL Sbjct: 180 HLRQAARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLL 239 Query: 124 -------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 D D +R A++EV+Y +G+R+SEL GLD++ +D + V V+GKG+KE Sbjct: 240 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 299 Query: 177 RRLPIGRNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQ 231 R +P+G A+ + W+ R + E ALF+ G R +AR +++ Sbjct: 300 RVVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTV 359 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 H LRHS ATH+++ D+R VQELLGH++L+TTQIYTH+ + LA Y AH Sbjct: 360 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAH 419 Query: 292 PRA 294 PRA Sbjct: 420 PRA 422 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 89/295 (30%), Positives = 151/295 (51%), Gaps = 8/295 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 L + + ++ +L VER ++ ++ +Y+R + + F + + + + + Sbjct: 23 LKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFC----PKEIGNYETDDITKYLLSL 78 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + GL S+A + AL FF +L + V K LP + V++M +LL Sbjct: 79 QEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLL 138 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + PL +R++ M+E++Y G+R+SEL+ + + L+L + V GKGSK+R +P Sbjct: 139 NSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRYVPYV 198 Query: 183 RNAVAWIEHWLDL-RDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 +L R + + + LFL+ G+R+S K + ++ + V P Sbjct: 199 DTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANIKKEVTP 258 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H RHSFATH+LE +LR VQ LLGH+++ TTQIYTH+D + L Y HPRA Sbjct: 259 HTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 109/295 (36%), Positives = 161/295 (54%), Gaps = 9/295 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE + +LS R+ SP T+ Y+ L ++ A +G + + + VR + +R G Sbjct: 22 VEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAG 80 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID- 126 AA++ R SA R FF W ++ + A+P +++ K P+ LP + VD +LD Sbjct: 81 ASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAV 140 Query: 127 -----INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 P RD A+LEV+YG GLR+ EL GLD+ +D V V GKG KER +P+ Sbjct: 141 AQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPM 200 Query: 182 GRNAVAWIEHWLDLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 G A+ I+ WL R+ + ALFL G+RI R V++ + + + P Sbjct: 201 GAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSPDLGP 260 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRH+ ATH+LE DLR VQ++LGH +L+TTQIYTH+ + L + + AHPRA Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteriaceae RepID=XERC_BIFLI Length = 355 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 152/354 (42%), Gaps = 63/354 (17%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T D++ ++ YL R LS TL Y+ L A ++ G+ + + +R++ Sbjct: 4 TQFDGDIDSFVSYLKSNRGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMA 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + +S+A + A+R FF W +PA + P P LP + + Sbjct: 64 -VESRDHARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQ 122 Query: 122 LLDIDIN---------------------------------------------------DP 130 LLD+ + Sbjct: 123 LLDVAEHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTA 182 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 + R+ A+LE++Y G+R++ELV +DI +D + + V GKG+K+R +P G A +E Sbjct: 183 ESQRNAAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALE 242 Query: 191 HWLDL-RDLFGS---------EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 WL+ R + +ALFL G RI R + + G+ + PH Sbjct: 243 TWLEQGRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP-DISPH 301 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRHS ATH+L+ DLR VQE+LGH++L TTQ YTH+ + L + Y A PRA Sbjct: 302 ALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella RepID=C5VK74_9BACT Length = 294 Score = 339 bits (870), Expect = 8e-92, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 4/293 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFAVRSR 64 VE++L Y+ ER SP+T++NY++ L F E SW+ D +VRN+ Sbjct: 2 PMVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMM 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +G A+S+ RLSALRSF+ + + + ++ +P G+ PK + LP+ + +M RLLD Sbjct: 62 DRGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLD 121 Query: 125 ID--INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + V +R ++ Y G+RLSEL+GLD K +D + E+ V GK +K+R +P G Sbjct: 122 SKMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFG 181 Query: 183 RNAVAWIEHWLDLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + + ++R+ + A F ++ GKR++ V+ + K PH Sbjct: 182 KELADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHV 241 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FAT ML L V++LLGH +LSTT+IYTH F+ L VY AHPRA Sbjct: 242 LRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >UniRef50_A6LE90 Tyrosine type site-specific recombinase n=8 Tax=Bacteroidales RepID=A6LE90_PARD8 Length = 302 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 161/295 (54%), Gaps = 6/295 (2%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN--GLQSWQQCDVTMVRNFAVRSR 64 ++ +L YL ER S T+ Y + L+ + E+ G+ + + D VR++ V Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 + L S+ +LS+L+SFF +L+ + + ANP + VS PK + LP I ++ LLD Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 125 ID--INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D D VR+R ++E++Y G+R SEL+G+ +D E+ +V V GK +K+R +P Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 183 RNAVAWIEHWLDLRD-LFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 + + ++RD + + F+ K G ++S V + + + PH Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFAT ML + +L V++LLGH++L++T +YTH F+ L VY AHPRAK+ Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKK 295 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 148/295 (50%), Gaps = 13/295 (4%) Query: 12 LRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAA 71 L L ++ LS TL +Y+R LE + + + + ++ ++ Sbjct: 31 LDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAG-PLATLTPPALLDYLTWRTQQHYSPL 89 Query: 72 SLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI-NDP 130 S A S LR+FF + V NP+ ++ P P LPK + + LL P Sbjct: 90 SNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETP 149 Query: 131 LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIE 190 +R+RAMLE+MY AGLR+SELV L + L+ G + + GKG KER +P+G + W++ Sbjct: 150 EGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVPLGEESQHWLQ 209 Query: 191 HWLD-LRDLFGSEDD---------ALFLSKLGKRISARNVQKRFAEWGIKQGL-NNHVHP 239 +L+ R ++ LF++ KR+S + + + G+ N V P Sbjct: 210 RYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIAPNKVSP 269 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+L DLR +Q LLGH ++STTQIYT + QHL ++ HPR Sbjct: 270 HVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPRG 324 >UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobacteria RepID=A2U0K2_9FLAO Length = 315 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 83/294 (28%), Positives = 163/294 (55%), Gaps = 2/294 (0%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVRSRR 65 ++ +L YLS E+ S T++ YQ+ L + +F N + + + + +R++ V Sbjct: 22 LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 + + ++ ++S+L+SF+ +L ++K+NP + A K + + ++ +L+ Sbjct: 82 EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141 Query: 126 DI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 + N +++R++ M+E+ Y G+R +EL+ + +K ++ S + V+GK +KER +PI + Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201 Query: 185 AVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 + + +L R + + LF+++ G +I V + + K PH LRH Sbjct: 202 VLKTLNLYLGHRKNISNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSKVKKSPHMLRH 261 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 SFATH+L DL V+ELLGH++L++TQ+YTH + VY+ AHP++K+ + Sbjct: 262 SFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHPKSKKNE 315 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 164/277 (59%), Gaps = 5/277 (1%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + +VE+++ YL +++S T+L+Y+R L ++ ++ G+ + T + ++ + Sbjct: 1 MFDEVEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFL 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R+G AA+++ L+++++FF + ++ +K NPA+ + APK + P + V+++ RLL Sbjct: 61 EREGKAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLL 120 Query: 124 DID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + P +RD+AMLE++Y G+R+SEL+ L++ H+++ G + G ER +P G Sbjct: 121 NQPGGRTPKEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSGR-ERTIPFG 179 Query: 183 RNAVAWIEHWLD-LRDLF--GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 R A ++ +L R E D LF++ G ++S + K +G K G+ + P Sbjct: 180 RVAKKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT 276 H LRHSFA H++ S D++ VQ++LGH++++TTQ+Y Sbjct: 240 HTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 172/298 (57%), Gaps = 13/298 (4%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQC----DVTMVRNFAVRSR 64 ER+ YL + R++SP T+ Y L +++ F S + + +Q VR++ R+ Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTL 66 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G +++A +A+R+F W + + L ++PA +S+P+A + LP +D D LL+ Sbjct: 67 ADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLN 126 Query: 125 IDINDPLA-----VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 ++ A +R+ A+LE+ Y GLR+SE+ LDI L+ ++ V V+GKG+KER + Sbjct: 127 TARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNKERVV 186 Query: 180 PIGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P G A ++HWL R E +ALFL G RI R V+ + + G++ Sbjct: 187 PYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVH-D 245 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRHS ATH+L+ DLR VQE+LGH++LSTTQ YTH+D L+++Y AHPRA Sbjct: 246 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 159/302 (52%), Gaps = 9/302 (2%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M D +E + YL+++ S T Y L +++ FA E G + ++R++ Sbjct: 1 MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERG-TGLDGLSLPLLRSWL 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM- 119 + G+ +LA R SA+++F W V + L A+PA + PK R LP + D Sbjct: 60 SAAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQAL 119 Query: 120 ----NRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 DP+A+RDR ++E++Y G+R+SEL GLDI +D V V+GKG+K Sbjct: 120 GAMAAAKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNK 179 Query: 176 ERRLPIGRNAVAWIEHWL-DLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQG 232 +R +P G A + WL D R + + AL L G+R+ R + + Sbjct: 180 QRSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVS 239 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + PH LRHS ATH+LE DLR VQELLGH++L+TTQ+YTH+ L +V+D AHP Sbjct: 240 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 Query: 293 RA 294 RA Sbjct: 300 RA 301 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 88/287 (30%), Positives = 157/287 (54%), Gaps = 6/287 (2%) Query: 11 YLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGA 70 YL Y +VE+ LS TL +Y+R + ++F S +S + + F + +G + Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLS-RNKKSILKATRKDIEKFLSERKEQGSKS 60 Query: 71 ASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI-DIND 129 ++A ++ + + +LV +N + NP + + R LP+++ +++ LL + + Sbjct: 61 RTVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKT 120 Query: 130 PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWI 189 +RD+A+ E+MY +GLR+SE+ L I + E + + GKG +ER +PI A+ + Sbjct: 121 DKGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDIL 180 Query: 190 EHWLDLRDL---FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 + ++ + G + LFL+ G +IS + K E K + +++PH LRHSF Sbjct: 181 QRYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIYPHTLRHSF 240 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ATH+++ DLR VQ +LGH++++TT+IYTH+D HL HP+ Sbjct: 241 ATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPK 286 >UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1G4_9MICC Length = 358 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 ++R+ R+L E+ S T+ +Y LE + + G++ D + +R + Sbjct: 56 FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSL 115 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +++A R S LR+FF W + + ANP +G+ PK HLP + + MN+LL Sbjct: 116 HLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLL 175 Query: 124 -------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 D D +R A++EV+Y +G+R+SEL GLD++ +D + V V+GKG+KE Sbjct: 176 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 235 Query: 177 RRLPIGRNAVAWIEHWLDL-RDLFGSEDD----ALFLSKLGKRISARNVQKRFAEWGIKQ 231 R +P+G A+ + W+ R + E ALF+ G R +AR +++ Sbjct: 236 RVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTV 295 Query: 232 GLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 H LRHS ATH+++ D+R VQELLGH++L+TTQIYTH+ + LA Y AH Sbjct: 296 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAH 355 Query: 292 PRA 294 PRA Sbjct: 356 PRA 358 >UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510416 Length = 319 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 163/316 (51%), Gaps = 24/316 (7%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQ---------SWQQCD 52 T + V Y +L R +S T Y + + + D Sbjct: 5 TTIAEVVSGYADHLRS-RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDID 63 Query: 53 VTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPK 112 + +R++ + G +++A +++A++SFF + V+Q+ L NPA + PK LP Sbjct: 64 LNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPT 123 Query: 113 NIDVDDMNRLL--------DIDINDPLA----VRDRAMLEVMYGAGLRLSELVGLDIKHL 160 + L+ + D +DP+ VRD A+LE++Y +R+SEL GL+ + Sbjct: 124 VLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDV 183 Query: 161 DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED--DALFLSKLGKRISAR 218 D + + V+GKG+KERR+P G+ A ++ WL LRD F SE DALFL G RI AR Sbjct: 184 DHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGAR 243 Query: 219 NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHL 278 V++ +G + PH LRHS ATHML+ DLR +QELLGH+ +S+TQIYTH+ Sbjct: 244 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHV 303 Query: 279 DFQHLASVYDAAHPRA 294 Q L Y AHPRA Sbjct: 304 SMQRLQETYRQAHPRA 319 >UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7U3_9BACT Length = 319 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 108/286 (37%), Positives = 148/286 (51%), Gaps = 3/286 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 DL T + RY+ ++S+ + SP T LNY+ LE FA + G VR F Sbjct: 25 DLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFIRG 84 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL A S++ +LSALR F +L Q+ + ++P + PK P HLP+ + D +NRL Sbjct: 85 LSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVNRL 144 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + A R+R +LE+ Y AGLR++ELV L LD + VMGKGSKER +P G Sbjct: 145 ISAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVPYG 204 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + A + + W SE +F K GK ++ R V + G PH L Sbjct: 205 QWAASALAEWKAQCPP--SEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPG-ASPHTL 261 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 RH FATHMLE ++ VQELLGH +L TTQ Y + + L YD Sbjct: 262 RHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYD 307 >UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alphaproteobacteria RepID=Q2RV24_RHORT Length = 330 Score = 336 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 108/303 (35%), Positives = 151/303 (49%), Gaps = 10/303 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFA-----SENGLQSWQQCDVTMV 56 +DL + +L +L ER+ S TL Y R L A + F E GL + Sbjct: 29 SDLRPSLVAWLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADF 88 Query: 57 RNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDV 116 R + +GL S+A LS LR+ F WL + L+ + +P+ P+ +PK + Sbjct: 89 RAYMAARLTQGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSE 148 Query: 117 DDMNRLLDID----INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGK 172 + L + + LA RD A+ ++YG GLRL E + LD L + + GK Sbjct: 149 SEALDALSVASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDL-PSGEVMRITGK 207 Query: 173 GSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 G KER +P+ V + +L G DD LFL GKR++ VQ++ G Sbjct: 208 GRKERLVPLLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLG 267 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L PH LRHSFATH+L GDLR +QELLGHA+LSTTQ YT +D L ++ A HP Sbjct: 268 LPETATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHP 327 Query: 293 RAK 295 RA+ Sbjct: 328 RAR 330 >UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S5H6_PROA2 Length = 335 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 161/318 (50%), Gaps = 29/318 (9%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINF------ASENGLQSWQQCDVTMVRNF 59 ++ +L Y+++ER S T Y+ + F ++ V VR F Sbjct: 18 PFLKGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLF 77 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 KGL S+A +L+A++SF+++L+ +K + V P+ + +P + + Sbjct: 78 MGELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERET 137 Query: 120 NRLLD----------------IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLE 163 +L D RDRA+LEV+YG GLR+SE++GL ++++L+ Sbjct: 138 EKLFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQ 197 Query: 164 SGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF-------GSEDDALFLSKLGKRIS 216 + V GKG K+R +P+G A + ++ ++R F + +F++K G+RI Sbjct: 198 DSLLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIY 257 Query: 217 ARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT 276 VQ+ ++ + +PH LRHSFATHML S DL+ V E+LGH NL+TT+IYT Sbjct: 258 PVLVQRVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYT 317 Query: 277 HLDFQHLASVYDAAHPRA 294 H+ F + VY AHP+A Sbjct: 318 HVTFGRIKEVYLKAHPKA 335 >UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID=B2GFZ3_KOCRD Length = 378 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L + + +LS+ER S T+ +Y + + + E+G+ D +R + + Sbjct: 74 PLAPYLPEFRAHLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQ 133 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 ++GL +S++ ++A+ +FF W V L+ +PA G+ P+ RHLP + + + Sbjct: 134 RHQRGLARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEM 193 Query: 123 LDI-----------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG 171 LD + + LA RD A+LE++Y G R+SELVGLD H+D + + G Sbjct: 194 LDALGDVALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITG 253 Query: 172 KGSKERRLPIGRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGI 229 KG K+RR+P G A + W R +E DA+F+ G RI R ++ A+ Sbjct: 254 KGDKQRRVPYGERAGDALAVWEHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALN 313 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + PH LRHS ATH+L+ DLR VQELLGHA ++TTQIYTH+ + + Y Sbjct: 314 DVPDTSARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQ 373 Query: 290 AHPRA 294 AHPRA Sbjct: 374 AHPRA 378 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 17/297 (5%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 ++ + +L L+ R+LS T+ Y+ L ++ GL + ++R Sbjct: 20 NIEAILMDFLDELTYSRRLSGATVRAYRADLMPLLA-----GLDHISELSTPVIRAHLGA 74 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G +SLA +++R F WLV++ L A+P+ +S PK +HLP+ + + + Sbjct: 75 KHAEGAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEA 134 Query: 123 LD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 ++ + +A RD A++E++Y G+R+ EL D+ ++ + V+GKG K+R +P Sbjct: 135 IEKVSSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVP 194 Query: 181 IGRNAVAWIEHWLDLR---DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G A A ++ WL +R + ALFL G R++ R ++ +W V Sbjct: 195 FGAPAEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-------DV 247 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHS AT M+E DLR VQE+LGH++L+TTQIYTH+ L V+ AHPRA Sbjct: 248 SPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAZ0_SORC5 Length = 358 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 125/343 (36%), Positives = 176/343 (51%), Gaps = 49/343 (14%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL---------------- 45 T L + R+L YL+ ER+ S T+ Y+R LE + FA E Sbjct: 13 TTLEQAIARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHRPARARGKAPA 72 Query: 46 ----------------------QSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSF 83 + DV ++R++ R AS+A ++ A R+ Sbjct: 73 TGKTPATGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSLARTH-APASIARKVGAARAL 131 Query: 84 FDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI-NDPLAVRDRAMLEVM 142 +L + E+ N A ++ PK R LP +DVD +++I +RDRAMLE + Sbjct: 132 LRYLERRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGLRDRAMLETL 191 Query: 143 YGAGLRLSELVGLDIKHLDL---ESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLF 199 YGAGLR+SEL GLD+ H+D + V V+GKG KER +P+G +A+A IE +L+ RD Sbjct: 192 YGAGLRVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIERYLERRDEL 251 Query: 200 GSED------DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLES 253 ALFLS+ G RI R VQ +G +HPH LRH+ ATH+L+ Sbjct: 252 ADPTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAGRADLHPHALRHTCATHLLDG 311 Query: 254 SGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 DLR +Q+LLGHA+L+TTQ YTH+ HL VYDAAHP A++ Sbjct: 312 GADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMARK 354 >UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroidales RepID=B6YR66_AZOPC Length = 299 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 3/292 (1%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 + +L +L ER S TL Y L F + + +++R + V Sbjct: 8 NQLSIFLCHLRYERNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLMD 67 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 + S+ +LS LRSFF +L ++++NP KG+ + R LP + +MN LL Sbjct: 68 RNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLLD 127 Query: 125 -IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 RDR +LEV Y G+R SELVGL+ + +D ES + V GKG+K+R +P + Sbjct: 128 LSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFSK 187 Query: 184 NAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + ++ +RD A F+ + G+ ++ V + + PH L Sbjct: 188 TLEEILSYYKTIRDETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKRSPHVL 247 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RH+FAT ML + +L V+ELLGH++L++T+IYTHL F+ L Y AHPRA Sbjct: 248 RHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 160/294 (54%), Gaps = 8/294 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 D + +LRY +ER+LSP T +Y++ L+ + + D R + Sbjct: 3 FLEDRQSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPY---DAQTARRYLYVL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 K L A++++ ++S + F ++ + + +++PK + LP ++ +LL Sbjct: 60 YEKQLAASTVSQKVSCFKQFGKFMAREQGGEP-LFHDLTSPKKKQSLPTFAVPTEVEQLL 118 Query: 124 DID---INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + + L RD A++EV+YG G+R++EL G+++ D V VMGKG KER +P Sbjct: 119 EAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVP 178 Query: 181 IGRNAVAWIEHWLDLRDLFGSEDD-ALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 IG+ AV ++ +++LR G + ALFLS+ G R++ ++ G++ + P Sbjct: 179 IGQYAVQALQRYIELRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTP 238 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 H LRHSFAT +LE DLR VQELLGH +LSTT YTH+ + L S+Y A HPR Sbjct: 239 HSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae RepID=D1B6D4_THEAS Length = 292 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 99/292 (33%), Positives = 146/292 (50%), Gaps = 7/292 (2%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 ++ +L YL S T++NY L + + + Q VR F G Sbjct: 2 IDSFLEYLKSL-GRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYG 60 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 AS ++S++R F +L ++ +P++GV P++ LP+ I D+ RLL+ Sbjct: 61 FAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGP 120 Query: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 + A RDR ++E++YG+GLR+SEL LD +D+E + VMGKGSK R +P G Sbjct: 121 SGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQD 180 Query: 188 WIEHWLDLRDLFGSEDDALFLSKLG-KRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSF 246 + W LF K G +R++ R V + + + GL V PH LRHSF Sbjct: 181 MLRRW----GEMVGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFG-VSPHTLRHSF 235 Query: 247 ATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 ATH+LE LR VQEL+GH +L TTQ Y + + + Y HPRA K Sbjct: 236 ATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHPRAGGDK 287 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 175/294 (59%), Gaps = 5/294 (1%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 +E+ L +L++ER + T L Y++ LE +++ + L S + + F R Sbjct: 11 QKTIEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKL-SIGSVRSSHIELFLDEER 69 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 ++GL +S+ + + ALR F++L QN++K NP P LP+ + ++ +LL Sbjct: 70 KRGLSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQ 129 Query: 125 ID-INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 + PL RD+A+LE++Y +GLR+SEL+ L ++ E ++ V+GKG+KER +PIG+ Sbjct: 130 APFPDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGK 189 Query: 184 NAVAWIEHWLDL-RDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPH 240 A ++ ++ R ++ +FL++ G+ ++ +++ + G++ V+PH Sbjct: 190 CAKEALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGIDKKVYPH 249 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 LRH+FA+H++E+ DLR +QELLGHAN++TTQIYTH++ +HL ++ HPR+ Sbjct: 250 LLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Proteobacteria RepID=Q1LSD3_RALME Length = 369 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 130/313 (41%), Positives = 181/313 (57%), Gaps = 20/313 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASE-NGLQSWQQCDVTMVRNFAVRS 63 V RYL +L+ R+L+ TL +Y L + + A + + +R+FA R Sbjct: 28 DPLVVRYLDWLATSRKLAAHTLTSYGHDLSVLQSQAIRLAPGVALLALETRHIRSFAARL 87 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNE-LKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 GL A ++A LSA R F+ W +++NP GV APK R LPK + V+ L Sbjct: 88 HGNGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVAL 147 Query: 123 LDIDINDPLA-VRDRAMLEVMYGAGLRLSELVGLDI---KH--------LDLESGEVWVM 170 + +D +RD+A+ E+ Y +GLRLSEL+ LD+ + LDL+ EV V+ Sbjct: 148 VAHRQDDTNESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAEVTVL 207 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGSED------DALFLSKLGKRISARNVQKRF 224 GKGS+ R +P+G A+ ++ W+ +R++ ALFL G+R+ VQ+R Sbjct: 208 GKGSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHALFLGTRGRRLPISTVQQRI 267 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 + G+ + VHPH LRHSFATHML+SSGDLR VQE+LGHA++STTQIYT LDFQHLA Sbjct: 268 KRQALAAGVPSDVHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLA 327 Query: 285 SVYDAAHPRAKRG 297 VYD AHPRA R Sbjct: 328 KVYDQAHPRAGRA 340 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 157/311 (50%), Gaps = 20/311 (6%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAII-----NFASENGLQSWQQCDVTMVRNF 59 + + +YL E+ S T Y + I + A E +W+Q D + + Sbjct: 7 DNALLAFFKYLKTEKNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGY 66 Query: 60 AVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + + +L + S+LRS +++ + NP + + A K + LP + +D+ Sbjct: 67 IFSLQESKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDI 126 Query: 120 NRLLDID----------INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWV 169 + LL ND +A RD A+LE++Y GLR+ E + ++ ++LE + + Sbjct: 127 STLLSSPAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKI 186 Query: 170 MGKGSKERRLPIGRNAVAWIEHWLDLRDL----FGSEDDALFLSKLG-KRISARNVQKRF 224 GKG K+R +G A +E + R + S +D +F++ KR+SAR++Q+ Sbjct: 187 FGKGKKQRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNL 246 Query: 225 AEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLA 284 + L + PHKLRHSFATH+L++ DLR VQELLGH NLSTTQIYTH+ L Sbjct: 247 KAYLQSCQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLL 306 Query: 285 SVYDAAHPRAK 295 YD AHP A+ Sbjct: 307 QAYDQAHPHAQ 317 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 110/303 (36%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGL--QSWQQCDVTMVRNFA 60 L E +L +L++ + S T Y+R + + GL + + + ++ F+ Sbjct: 2 QLPAVTETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFS 61 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 K L S+A +L+ALRS F +L+ + +K NPA GV PK P+ ++VD + Sbjct: 62 ASLYYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVF 121 Query: 121 RLLDIDIND----------PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 LL N +A R+ A+LE++YG+GLR+SE + L++ + E G V V+ Sbjct: 122 LLLKGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVI 181 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDLRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGI 229 GKG+KER P+ ++ +E WL +R + + + ALF+ GKR+ R + E + Sbjct: 182 GKGNKERLAPLSDTSIVALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCL 241 Query: 230 KQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 + GL PH LRHSFATH+LE +LR VQELLGHA LSTTQ YTH+ L YD Sbjct: 242 QAGLPLTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDK 301 Query: 290 AHP 292 AHP Sbjct: 302 AHP 304 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 156/295 (52%), Gaps = 10/295 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L +E +L YLS+ER SP T Y+R L ++F +E G + +V V F Sbjct: 9 PLDPRMESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERG-RDPVPPEVDTVSLFLAS 67 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 R +G +S+ + ++SF +L E+ +P K P P +P + ++ RL Sbjct: 68 LRSQGAAKSSVQRAAACIKSFSRFL---GEVGEDPGKVPMLPDKPSPMPAILTEGEVLRL 124 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ + P +RDRAM+E++YG GLR SEL L +K LDL SG V V GKG K R LP+ Sbjct: 125 LEATAGDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPL 184 Query: 182 GRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGL-NNHVHPH 240 + +E +L +R +F G + K G + + + +HPH Sbjct: 185 VGETRSALERYLKVRGTHQG---PIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPH 241 Query: 241 KLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 LRHS ATH+L DLR +Q LLGH+++ TT++YTH D + L VYD +HPRA+ Sbjct: 242 ILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRAQ 295 >UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1F3_9PROT Length = 298 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 128/295 (43%), Positives = 171/295 (57%), Gaps = 5/295 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D T V YL+ L+ R SP T+ Y+R L A G QQ V+++ V Sbjct: 5 DFRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIG---LQQITRLQVQDWLVV 61 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 KGL AA+LA RLSAL D V AN A GV PK LP+ + + L Sbjct: 62 GHAKGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAAL 121 Query: 123 LDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + + RD A+L VMYGAGLR+SE VGLD+ +DL S E+ V+GKGSK+R +P+ Sbjct: 122 M-QPTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLP 180 Query: 183 RNAVAWIEHWLDLRDL-FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHK 241 A + WLD R L ++ A+FL++ G+R++AR+VQ+ ++ G + V PH+ Sbjct: 181 TTAADLLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHR 240 Query: 242 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 LRHSFATH+L DLR +QELLGHA+L+TT+ YTHLD L VYD +HPRA R Sbjct: 241 LRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRAGR 295 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 332 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 157/297 (52%), Gaps = 5/297 (1%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 + D+ R+L +L +E L+ +L Y R L + + + + + D + F Sbjct: 13 DPVDEDLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAA-SQRRLRDADAADLSLFLA 71 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 + + G S+A +LS+LR F+ + + +P+ + RHLP +++ Sbjct: 72 QRLQGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDA 131 Query: 122 LLDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 LL D L +RD AMLE +Y GLR+SELVGL LDLE+G V +GKGSKER +P Sbjct: 132 LLAAPDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIP 191 Query: 181 IGRNAVAWIEHWL-DLRDLFG--SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 +G A+ + +L + R + ALFL+ G+ +S + + K G+ + Sbjct: 192 VGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSAF 251 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRH+FATH+L+ DLR VQ +LGHA L+TT+IYTH+ L +++ HPR Sbjct: 252 SPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPRG 308 >UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteraceae RepID=D2QBI8_9SPHI Length = 298 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 93/294 (31%), Positives = 154/294 (52%), Gaps = 6/294 (2%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINFA-SENGLQSWQQCDVTMVRNFAVRSRRKG 67 + +L ++ E++LS TL Y LE F +E + ++ D VR++ V G Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD--I 125 + +S+ +++ LR+FF +L+ + + +P + A KA + LP+ ++ M LLD Sbjct: 65 MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124 Query: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 + +RD+ +LE++YG G+RLSEL GL ++L + V+GK +K R +P+ + Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184 Query: 186 VAWIEHW--LDLRDLFGSEDDA-LFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 I+ + L ++ G D A L +S G +Q+ PH L Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLGTKSPHVL 244 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 RH+FATH+L DL +++LLGH++L+ TQIYTH L YD AHP+AK+ Sbjct: 245 RHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHPKAKK 298 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 11/306 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M+ + +L ++VER + TL Y + LE F S D + + Sbjct: 1 MSQGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLS-RSGHDLHDADAETIEAYF 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +GL A+ A R SA+R F+ +++ + +P++ V+APKA R LPK ++ D++ Sbjct: 60 QDLGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIE 119 Query: 121 RLLDID--INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178 RLL + +R M+E++Y +GLR+SEL+ L + L + + V GKG KER Sbjct: 120 RLLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERL 179 Query: 179 LPIGRNAVAWIEHWLDLRDLFG----SEDDALFLSKLG--KRISARNVQKRFAEWGIKQG 232 P+ A A ++ +L R F + LF S G R++ R V + + I G Sbjct: 180 APLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPS-RGATGRLTPRRVGQLLEDAAIAAG 238 Query: 233 LNN-HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAH 291 ++ V PH LRH+FATH+LE DLR +Q LLGHA+++TTQIYTH+ +HLA + H Sbjct: 239 IDRQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKH 298 Query: 292 PRAKRG 297 P ++ Sbjct: 299 PLGRKK 304 >UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB85_BRAFD Length = 332 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 104/323 (32%), Positives = 159/323 (49%), Gaps = 33/323 (10%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++ + +L +ER S T+ Y+R+ ++ + + DVT +R++ Sbjct: 10 DAVLDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSARA 69 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 G A++LA +++R+F WL S + + + AP+ RHLP + D LLD Sbjct: 70 ETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELLD 129 Query: 125 I-------------------------DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKH 159 + + +RD A+LE++Y +GLR+SELV LD Sbjct: 130 GLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRSR 189 Query: 160 LDLESGEVWVMGKGSKERRLPIGRNAVAWIEHW--------LDLRDLFGSEDDALFLSKL 211 +D + G V V GKG +ER +P+G A+ ++ W L DALFL Sbjct: 190 IDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGVR 249 Query: 212 GKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLST 271 G R+ R V+ + G++ HV PH LRHS ATH++E DLR VQ+ LGH++L+T Sbjct: 250 GGRLGDRAVRTLVDRHVAEAGISRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLAT 309 Query: 272 TQIYTHLDFQHLASVYDAAHPRA 294 TQIYTH+ + L D AHPRA Sbjct: 310 TQIYTHVSAERLRRTVDQAHPRA 332 >UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W041_9ACTO Length = 302 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 161/297 (54%), Gaps = 9/297 (3%) Query: 6 TDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRR 65 ++ + +L R S T Y+ ++A + + N + + +R+F R Sbjct: 7 ALLKDFTTWLEHFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNRIR 66 Query: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD- 124 KG AS+A ++LR F W + Q L ++P+ + K HLP+ + ++ +N+L + Sbjct: 67 KGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLFNH 126 Query: 125 ----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 + A+RD A E++Y G+R++ELVGL++ +D + + V+GKG+KER +P Sbjct: 127 LVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERLVP 186 Query: 181 IGRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 G A+ + W+ R +E ALFL G RI R V++ + ++ G+ + Sbjct: 187 FGTPALESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPV-L 245 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRH ATHMLE DLR VQ++LGHA+L+TTQ YTH+D L+++ AHPRA Sbjct: 246 SPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302 >UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGY7_KYTSD Length = 336 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 165/333 (49%), Gaps = 40/333 (12%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 T L +VE + +L +ER SP T+ Y L A+ G W+Q ++ +R+FA Sbjct: 4 TGLLREVEGFADHLLLERGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAA 63 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 R GL ++LA ++ R+FF W+V+ L +P+ + +P+ + LP + + + Sbjct: 64 RRAAAGLARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQ 123 Query: 122 LLDIDINDPL-------------------------------------AVRDRAMLEVMYG 144 L++ P +RDRA+LE++Y Sbjct: 124 LVEGGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYA 183 Query: 145 AGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDL-RDLF--GS 201 G+R+ ELV LD + L+ V V GKGSKER +P G A+ +E W+ R Sbjct: 184 TGIRVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGAR 243 Query: 202 EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQ 261 +ALFL G RI R V++ + + PH LRHS ATHM+++ D+R VQ Sbjct: 244 SGEALFLGVRGGRIDPREVRRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQ 303 Query: 262 ELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 ELLGHA+L+TTQ+YTH+ + L +D +HPRA Sbjct: 304 ELLGHASLATTQVYTHVSVERLREAFDRSHPRA 336 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 102/296 (34%), Positives = 168/296 (56%), Gaps = 6/296 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T +ER++R+L+ E+ LS L+ ++ LE F E Q + + F Sbjct: 1 MQTHLERFIRFLAAEKGLSTAYQLSVRQTLEEFARFL-EMDNTGLAQTGIDTLSAFLRHL 59 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 + +G+ +S+ + + LR FF WL L+ +P+ + P+ LP +D ++ LL Sbjct: 60 QDRGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLL 119 Query: 124 DIDI--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 + + PL RDRA+LE++Y G+R+SE++ ++ D + V V+GKG+K R +P+ Sbjct: 120 ESIDIQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPV 179 Query: 182 GRNAVAWIEHWLDL-RDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 GR+A+ ++ +L+ R +FL+ G+ ++ +++ E GL HV Sbjct: 180 GRSALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVF 239 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHSFATH+LE+ DLR +QE+LGHA++STTQIYTHL+ Q L S++ HPR Sbjct: 240 PHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPRG 295 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 160/302 (52%), Gaps = 10/302 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 ++L ++ ++ ++S LSP T+ Y + LEA ++ + + +R++ Sbjct: 8 SELLAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDP-SSRDLRSYLA 66 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 RR G + ++A LSALRSFF WL APK R LP + +++ Sbjct: 67 EFRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAA 126 Query: 122 LLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L D + P+ +RD AMLE+ G R+SEL L++ + + +V ++GKGSKER +P Sbjct: 127 LFDAPDLSCPVGLRDAAMLELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVP 186 Query: 181 IGRNAVAWIEHWLD-LRDLF-------GSEDDALFLSKLGKRISARNVQKRFAEWGIKQG 232 + A+ E +L+ R G A+F+S G+ +++ ++ RF K G Sbjct: 187 LYARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAG 246 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 +++ + PH +RH+FAT +L DLR VQELLGHA+LSTTQIYTHL L S AHP Sbjct: 247 ISSDITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHP 306 Query: 293 RA 294 R Sbjct: 307 RG 308 >UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga RepID=C7M6X5_CAPOD Length = 307 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 91/300 (30%), Positives = 158/300 (52%), Gaps = 10/300 (3%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINF---ASENGLQS--WQQCDVTMVRNFAVR 62 + ++ YLS+E + S T+ Y+ L + F E + +Q D ++ + + Sbjct: 3 INAFIIYLSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIH 62 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAK-GVSAPKAPRHLPKNIDVDDMNR 121 + + S+ +LSAL++++++L +++ +P + G+ K + ++ + Sbjct: 63 LSDETISFRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEK 122 Query: 122 LLD--IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 +L + VR+RA++E +Y G+R SEL GL + +D E ++ V+GKG KER + Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182 Query: 180 PIGRNAVAWIEHWLDLRDLFGSED--DALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 PI ++ +L LR+ +E D LFL K GK+I + V + + V Sbjct: 183 PIIPELENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDV 242 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 PH LRHSFA+H+L++ DL V+ELLGH++L++TQ+YT+ L Y AHPRAK Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKGN 302 >UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobacteriaceae RepID=A5FIL1_FLAJ1 Length = 297 Score = 329 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 160/298 (53%), Gaps = 7/298 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN-GLQSWQQCDVTMVRNFAVR 62 + ++ + + YL E++ SP T+ Y L F E S ++ + + +R++ V Sbjct: 1 MKSNKQAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSWIVF 60 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 +G+ S+ ++++L++F+ +L+ +++ +P A K P+ + +++ L Sbjct: 61 LVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDL 120 Query: 123 L---DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + + I VRD+ ++++ Y G+R +EL+GL +K++DL SG V V+GK SKER + Sbjct: 121 MFGVESPI-GFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIV 179 Query: 180 PIGRNAVAWIEHWLDLRDLFGS--EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHV 237 P+ I ++ R+ + + F+SK G ++S V + + + Sbjct: 180 PLLPIVADQINLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKK 239 Query: 238 HPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 PH LRH+FATH+L + DL V+ELLGH++L++TQ+YTH L VY AHPR K Sbjct: 240 SPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK 297 >UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM7_9FIRM Length = 304 Score = 329 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 94/291 (32%), Positives = 161/291 (55%), Gaps = 5/291 (1%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 MT L +YL Y+S++ S T+ Y+ L F ++ + Q D M+ + Sbjct: 1 MT-LEEAFRQYLIYISIQFPKSEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEYV 59 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R AAS+ ++A+R F +L + + +PA+ + + + LP D++ Sbjct: 60 RVLARDH-AAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDEIE 117 Query: 121 RLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 +++ + P +R A+ E++YG GLR+SE L + +DLE G + + GKG+KER +P Sbjct: 118 KIMAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVP 177 Query: 181 IGRNAVAWIEHWLD-LRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 + + + + ++D +R L+ LF+++LGK+ + +++ I+ G+ + Sbjct: 178 MPKQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPIT 237 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDA 289 PHKLRH++ATHMLE DLR VQELLGH++++TTQIYTH+D L + YD Sbjct: 238 PHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYDE 288 >UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepID=XERC_CHLT2 Length = 315 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 154/305 (50%), Gaps = 21/305 (6%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQ------------------C 51 +L YL + S TL NY L ++ F + S Sbjct: 7 AFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPPLSFSLF 66 Query: 52 DVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLP 111 +R + + + ++ RLSA++SF + V + NPA+ + P+ P+ LP Sbjct: 67 TKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELP 126 Query: 112 KNIDVDDMNRLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVM 170 + + + L+ + RDR +LE+ Y +GLR+SE+ L+ +D +S + + Sbjct: 127 SPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR 186 Query: 171 GKGSKERRLPIGRNAVAWIEHWLDL--RDLFGSEDDALFLSKLGKRISARNVQKRFAEWG 228 GKG KER +P+ + AV W++ +L+ R + A FL++ GKR+S R++ ++F ++ Sbjct: 187 GKGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYL 246 Query: 229 IKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 +K GL+ + PH +RH+ ATH LE DL+ +Q LLGH +L TT IYTH+ + ++D Sbjct: 247 LKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHD 306 Query: 289 AAHPR 293 HP Sbjct: 307 ETHPH 311 >UniRef50_C6XMJ6 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XMJ6_HIRBI Length = 318 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 11/295 (3%) Query: 10 RYLRYLSVERQLSPITLLNYQRQLEAIINFA-----SENGLQSWQQCDVTMVRNFAVRSR 64 ++ +L+ ER++S T+ Y+R + + F E + + VR + R Sbjct: 25 AFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTPSDVRAWLAFRR 84 Query: 65 -RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 L A S++ LSA+R+FF +L Q + + V APK P+ LP+ + + LL Sbjct: 85 ANDDLQATSISRALSAVRAFFKYLDRQLDKPNARIQMVKAPKRPQRLPRPVSQEIAKNLL 144 Query: 124 ----DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + D+ +A RD AM+ +MYGAGLR+SE + L + + + GKG+K R + Sbjct: 145 KEVENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADV-PARDILRIQGKGNKVRLV 203 Query: 180 PIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 P+ + + + R E+ LF GK+++ R +QK + I GL + P Sbjct: 204 PLIPAVRDALNVYYEKRPFLSDEEGPLFRGVKGKKLNPRIIQKLIEKLRISMGLPDTATP 263 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 H LRHSFATH+L + DLR +Q LLGHA+LS+TQIYT ++ L +++ AAHPRA Sbjct: 264 HALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHPRA 318 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 11/301 (3%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 + + LSVER SP T Y L + N A + + F Sbjct: 3 PDPLTAFFEMLSVERNASPRTREAYGHDLLDLRNHAG-IDADGLLTLNEGDIAGFFAALD 61 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 +GL +++L + +A+R F+ + V + +P++ ++A K R LPK + +++ L+ Sbjct: 62 ARGLASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIA 121 Query: 125 IDI--NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 + A R + ++E+ Y +G+R+SE+V L + + + + V GKG ER +P+ Sbjct: 122 AADAKDAHQATRLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLN 181 Query: 183 RNAVAWIEHWLDLRDLFG----SEDDALFLSKLG--KRISARNVQKRFAEWGIKQGL-NN 235 +A A I+ +LD+R LF + LF S G ++ R V + E ++ G+ Sbjct: 182 PSARAAIKDYLDIRPLFLNAKDKANPYLFCS-RGAEGHLTRRRVGQLLDEAALEAGIDPA 240 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 V PH LRH+FATH+LE DLR VQ LLGHA++STTQ+YTH+ + L V + HP +K Sbjct: 241 RVSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLSK 300 Query: 296 R 296 R Sbjct: 301 R 301 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 153/296 (51%), Gaps = 6/296 (2%) Query: 5 HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSR 64 ++ + L V SP T Y L A F E+GL S V ++ Sbjct: 6 RDLLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGL-SLLDFSPEDVTHYFAH-- 62 Query: 65 RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLD 124 R+ L S + LSA+RS+ +L + +P + P+ PR+LP +D +++ RLL+ Sbjct: 63 REDLAMRSRSRVLSAIRSWSRFLKRRGLPAIDP-DTLPVPRLPRNLPGVLDEEEILRLLE 121 Query: 125 I-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGR 183 D +RDRA+L Y +GLR+SEL L + L+L ++ V GKG KER + Sbjct: 122 APDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDG 181 Query: 184 NAVAWIEHWLD-LRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + A ++ +L+ +R + + LFL++ + + + + + G++ V PH L Sbjct: 182 LSCARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVSPHTL 241 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK 298 RHSFATH+L D+R +Q LLGH+++ TT+IYTH+D + LA HPR KR + Sbjct: 242 RHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRGKRPE 297 >UniRef50_C5CH36 Integrase family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH36_KOSOT Length = 305 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 150/295 (50%), Gaps = 10/295 (3%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 D VER+ YL R LS T+ +Y R L+ + E L ++Q + F Sbjct: 2 DFEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSL-DYRQVKRRDIEKFMKE 60 Query: 63 SRRKG-----LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 + L +S+A LS L++F+ +L + P V APK R +P+ I + Sbjct: 61 LSQGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYE 120 Query: 118 DMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG-EVWVM-GKGSK 175 ++ ++L+ L R+RA++ +MY GLR+SE+ L ++ + LES V V GKG K Sbjct: 121 EVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDK 180 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSEDDA--LFLSKLGKRISARNVQKRFAEWGIKQGL 233 +R +P+ +AV I +L RD F + LF+ G+ I+ ++V K K Sbjct: 181 DRIVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFP 240 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYD 288 + H+HPH RHS ATH+L+ ++ VQE+LGHAN+STT IY H+ + Sbjct: 241 DKHLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVR 295 >UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E0_ACIC5 Length = 310 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 170/303 (56%), Gaps = 11/303 (3%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSW--QQCDVTMVRNFAV 61 ++ VE YL L ER SP TL Y R+L +A + + + T +R + Sbjct: 8 MNQRVEAYLAALRNERGSSPHTLRAYTRELRDFAAYAERLLGKDVGVKAMEHTHIRAYLG 67 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 +GL AS A L+A+RS+ WL EL+ +PA V+ PK P+HLP+ ++DMNR Sbjct: 68 ELYERGLSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNR 127 Query: 122 LLDIDINDPLA--VRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 L+D + A RDR +LE++YG G+R +ELVG++++ + + + V GKG KER + Sbjct: 128 LVDASSEEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYV 187 Query: 180 PIGRNAVAWIEHWLDLRDLF----GSEDDALFLSKL---GKRISARNVQKRFAEWGIKQG 232 PIG A + +L R+ G + AL L+ R++ R+V + + + QG Sbjct: 188 PIGDAAAQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQG 247 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 L VHPH LRH+F TH+LE DLR +QELLGH LSTTQ YT L + +VYD HP Sbjct: 248 LPADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHP 307 Query: 293 RAK 295 RAK Sbjct: 308 RAK 310 >UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipplei RepID=Q83MV4_TROWT Length = 316 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 154/296 (52%), Gaps = 12/296 (4%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFA----SENGLQSWQQCDVTMVRNFAVR 62 + ++ YL R S T Y R L + S ++S + + +R++ Sbjct: 25 LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 84 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + A S+ +S+L+SFF W + N A + APK+ LP + + ++ Sbjct: 85 --QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQI 142 Query: 123 LDIDINDP--LAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLP 180 L + + +R+ A+ E++Y + +R+SELV LD+ +D + V V GK K+R + Sbjct: 143 LGNFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVL 202 Query: 181 IGRNAVAWIEHWLDLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238 G+ A ++ +L++R S+ ALFL G+RI+ R V + +E Sbjct: 203 FGKPASHALDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEM--PKGPRG 260 Query: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 PH LRHS ATHML++ DLR +QE+LGH++LSTTQIYTH+ + L S Y+ AHPRA Sbjct: 261 PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 316 >UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0Y3M6_9CAUL Length = 313 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 14/304 (4%) Query: 7 DVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRK 66 V+ +L ++VER + TL Y + LE F + D V + + Sbjct: 8 WVDAFLEMMAVERAAARNTLTAYGKDLEDARGFLG-RSKRDLDDADAEAVEAYFQDLGAR 66 Query: 67 GLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID 126 GL A+ A R SA+R F+ +++ + +P++ V+APKA R LPK ++ ++ RLL Sbjct: 67 GLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAA 126 Query: 127 I-------NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 + +R ++E++Y +GLR+SEL+ L + L + + V GKG KER Sbjct: 127 TAPNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLA 186 Query: 180 PIGRNAVAWIEHWLDLR----DLFGSEDDALFLSKLG-KRISARNVQKRFAEWGIKQGLN 234 P+ A A + +L R E LF S+ G R++AR V + + I G++ Sbjct: 187 PLNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGID 246 Query: 235 N-HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 V PH LRH+FATH+LE DLR +Q LLGHA+++TTQIYTH+ +HLA V HP Sbjct: 247 RDKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHPL 306 Query: 294 AKRG 297 ++ Sbjct: 307 GRKK 310 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 42/335 (12%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 +L + YL +L VER ++ T+L+Y+R L + F + G V +F V Sbjct: 19 ELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVADVTAADVSDFLVC 78 Query: 63 SR-----RKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVD 117 R R L A+S A + A R + +L+++ +A+P++ V P R LPK + V+ Sbjct: 79 LRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRLPKALPVE 138 Query: 118 DMNRLLDI----DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG-------- 165 + RLLD D + P +RDRA+LE++Y G R+SE+VGLD+ +DL G Sbjct: 139 AIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDDIDLGPGRLAGRSST 198 Query: 166 ----------------EVWVMGKGSKERRLPIGRNAVAWIEHWL-DLRDLFGSEDDA--- 205 V + GKG+KER +P+G A+ +E +L R + + Sbjct: 199 DPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVLAAAGRGAGP 258 Query: 206 ----LFLSKLGKRISARNVQKRFAEWGIKQGLNNH-VHPHKLRHSFATHMLESSGDLRGV 260 LFL+ G R+S ++ + A+ + GL V PH LRHSFATH+LE D+R V Sbjct: 259 ARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRSV 318 Query: 261 QELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 QELLGHA+++TTQIYT + L VY AHPRA+ Sbjct: 319 QELLGHASVTTTQIYTLVTVDALREVYVTAHPRAR 353 >UniRef50_C9LEJ3 Integrase/recombinase XerC n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ3_9BACT Length = 299 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 95/290 (32%), Positives = 145/290 (50%), Gaps = 4/290 (1%) Query: 9 ERYLRYLSVERQLSPITLLNYQRQLEAIINF-ASENGLQSWQQCDVTMVRNFAVRSRRKG 67 +R+L YL+ ++ SP+T++ Y+ LE F S+ +WQ D +VR + V G Sbjct: 10 QRFLSYLASDKGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWIVWRMDDG 69 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDID- 126 + ++ LSALRSF+ +L+ ++ +P V PK+ + LP + +M+RL D Sbjct: 70 IVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLFDKTH 129 Query: 127 -INDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 RD +L Y G+R +EL+ + +DL EV V GK +K+R +P G Sbjct: 130 FPETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRIIPFGAEL 189 Query: 186 VAWIEHWLDLRDLFGSE-DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRH 244 + + R LF+ G+ + V + ++ PH LRH Sbjct: 190 AEAFQAYYAARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIKKRSPHVLRH 249 Query: 245 SFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 SFAT ML + DL V+ELLGH+NL+TT IYTH+ + L Y AHPRA Sbjct: 250 SFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHPRA 299 >UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteriales RepID=C6Y269_PEDHD Length = 294 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 156/292 (53%), Gaps = 5/292 (1%) Query: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 VE +L YL E++ S T+ +YQ L +F + + +RNF V Sbjct: 3 VEHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVALMEDE 62 Query: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 + S+ +LSALRSF+ +L+ +N L +NP V APK P+ LP +D ++ LLD + Sbjct: 63 ISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLLLDSEE 122 Query: 128 ---NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRN 184 ++RD+ ++E ++G G+RL+EL+ L ++ + VMGK SKER +PIG+ Sbjct: 123 FFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIVPIGKT 182 Query: 185 AVAWIEHWLDLR--DLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 +++L+ F ++ LF++ G + + + + + PH L Sbjct: 183 LREQFRVYMELKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKKSPHVL 242 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 RHS+AT +L DL ++ELLGHA+L+ TQ+YTH + L ++Y AHP+A Sbjct: 243 RHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHPKA 294 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 155/298 (52%), Gaps = 9/298 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 M + +++ L L ++ +LS TL +Y+R L + +E G Q W D + + Sbjct: 1 MMSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECG-QDWLSADEFALSD-- 57 Query: 61 VRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 +G + S A LSA + + WL + NP + + APK+ R LP I ++ Sbjct: 58 -SVYAEGEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQID 116 Query: 121 RLLDIDI-NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRL 179 LL +RD+A+LEVMY GLR++E V L + +DL G + +GKG K R + Sbjct: 117 ALLAAPDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLV 176 Query: 180 PIGRNAVAWIEHWL-DLRDLFGSE--DDALFLSKLGKRISARNVQKRFAEWGIKQGLNNH 236 P+G+ A W+E + + R L D +F+S+ IS + E+ G+ Sbjct: 177 PLGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGI-AS 235 Query: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 + PH LRH+FATH++ DLR VQ +LGH++++TTQIYTH+ L ++ D H R+ Sbjct: 236 LSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSRS 293 >UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV23_9GAMM Length = 345 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 121/303 (39%), Positives = 178/303 (58%), Gaps = 10/303 (3%) Query: 2 TDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAV 61 TD V R+L LS ++ S T+ +Y++ L+ + + E + +F + Sbjct: 45 TDDQALVNRWLAELS-NKRYSAATIKSYRQALQPFLAYCYEQH-TELCHITRQQLSDFLI 102 Query: 62 RSRR-KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMN 120 R + +S L+ LR + WL+ Q + NP + +APR LP +D+D ++ Sbjct: 103 RRLDVDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLS 162 Query: 121 RLLDIDI-----NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSK 175 +LLD L +RD+AMLE++YG+GLR+ ELVGL++ +D + V+GKG K Sbjct: 163 QLLDQAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGK 222 Query: 176 ERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKL-GKRISARNVQKRFAEWGIKQGL 233 R +PIG A + ++L R L+ E D A+F+S+ G RIS R VQ R + G+ Sbjct: 223 TRIVPIGEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGV 282 Query: 234 NNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPR 293 ++PH LRH FA+H+L SGDLRGVQELLGH+++STTQIYTHLDF HL+ VYD AHPR Sbjct: 283 AQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHPR 342 Query: 294 AKR 296 ++R Sbjct: 343 SRR 345 >UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ50_9FIRM Length = 297 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 88/298 (29%), Positives = 171/298 (57%), Gaps = 5/298 (1%) Query: 3 DLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVR 62 L +++ +L + + SP T+ +Y+ L+ + + E + Q+ + +V++F + Sbjct: 2 KLDQAFQQFHLHLEINQGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQDFLSQ 61 Query: 63 SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRL 122 + S+ +++R+F + + + + NP + K +LP + V+++ +L Sbjct: 62 QSTIK-SSNSVVHMATSIRNFHED-IEFSTGEENPVSLIQVRKNETYLPSFLSVEEVKQL 119 Query: 123 LDI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPI 181 L+ +DP +R +LE++Y GLR+SEL L + + LE+G + ++GKG+KER +PI Sbjct: 120 LNSFTRDDPKQELNRTILELIYACGLRISELCSLTVAQVQLETGILRILGKGNKERIVPI 179 Query: 182 GRNAVAWIEHWLD-LRDLFGS-EDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHP 239 V ++++L+ +R ++ + + F++ LG RI+AR++Q + ++ G + P Sbjct: 180 PNQVVKDLDYYLNLIRPIWNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITP 239 Query: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRG 297 H LRH++ATH+L++ DLR +QELLGH+N+ TT+IYTH+ + L Y HP +K+ Sbjct: 240 HSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHPLSKKK 297 >UniRef50_A6G048 Site-specific recombinase, phage integrase family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G048_9DELT Length = 346 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 111/315 (35%), Positives = 165/315 (52%), Gaps = 25/315 (7%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQS--WQQCDVTMVRNFAV 61 + + +L +L ER+LSP T Y R +E I+ + + + VR + Sbjct: 1 MREALASFLVHLDKERRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLRLREVRAYLA 60 Query: 62 RSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNR 121 K A+++ +LSALR+F ++ + + N + PK R LP + V+D+ Sbjct: 61 ELHGK-RAASTVGRKLSALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTE 119 Query: 122 LLDIDIND-PLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESG------EVWVM-GKG 173 ++D + + +RDRA+LEV+YGAGLR+SE V L++ L E + V+ GKG Sbjct: 120 MIDGEQRPGAVGLRDRALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQGKG 179 Query: 174 SKERRLPIGRNAVAWIEHWLDLRDLFGSEDD--------------ALFLSKLGKRISARN 219 +K+R +P+GR + WLD R+ + A+FL G R+S R Sbjct: 180 NKDRVVPLGRKGAEAMRAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLSTRV 239 Query: 220 VQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLD 279 ++ G V PH LRHSFATH+L+S DLR +Q +LGHA+LSTTQ YTHLD Sbjct: 240 AREVVYRRCQASGARAVVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTHLD 299 Query: 280 FQHLASVYDAAHPRA 294 HL S+Y+ AHPRA Sbjct: 300 MGHLFSLYERAHPRA 314 >UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychrobacter RepID=Q1QE98_PSYCK Length = 349 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 175/302 (57%), Gaps = 10/302 (3%) Query: 1 MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFA 60 +++L V R+L LSV R SP TL Y L + F L W +CD + Sbjct: 39 LSELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKRLT-WTRCDKRQLAQHI 96 Query: 61 VR-SRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDM 119 + L AS+ LSA+R F+ WL+ ++ + NP G ++PR LP DVD + Sbjct: 97 SQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLL 156 Query: 120 NRLLD-----IDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGS 174 +LLD L +RD+AM E++Y +GLR+ ELV LDI +DL V V GKG+ Sbjct: 157 TQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGN 216 Query: 175 KERRLPIGRNAVAWIEHWLDLRDLFGSE-DDALFLSKL-GKRISARNVQKRFAEWGIKQG 232 K R +P+G A I +L R+L+ + D ALF+S+ G R+S R VQ+R + G Sbjct: 217 KTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAG 276 Query: 233 LNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 + +++PH LRH FA+HML SGDLR VQE+LGH+++STTQIYTH+DF L VYD AHP Sbjct: 277 IAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHP 336 Query: 293 RA 294 RA Sbjct: 337 RA 338 >UniRef50_B5ENS4 Integrase family protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ENS4_ACIF5 Length = 314 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 176/302 (58%), Gaps = 9/302 (2%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + T + +++ L ++SP T+ Y R L A FA + G Q D +R + + Sbjct: 3 IETAIAQFIETLRQGGRVSPATISAYSRDLHAWARFALQRGQTEIAQMDRGSLRAYLLAE 62 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 R +G+ SL +ALR+ + L NP G++ P+A + LP + VD L+ Sbjct: 63 RSRGVSVRSLRRHFAALRALYRHLQQDAPELRNPVSGLAMPRAEQRLPDWLTVDQARLLM 122 Query: 124 -------DIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKE 176 + D +RD+ +LE++Y + LR+SEL GL++ LD +G V V+GKG KE Sbjct: 123 QPAISDTEAAPQDFTGLRDQLILELLYSSALRVSELAGLNLGDLDPHAGTVRVLGKGRKE 182 Query: 177 RRLPIGRNAVAWIEHWLDLRDLF-GSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNN 235 R +P+G+ A A + +L R S++ ALF+++ G+R++ R++Q R + G L Sbjct: 183 RIVPVGQPAWAALRAYLAARPAVAASDEPALFVNRRGQRLTVRSIQVRVKKLG-DARLGQ 241 Query: 236 HVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAK 295 +HPH LRHS A+H+L+SSGDLR VQE LGHA + TT IYTH+D+Q LA VYD AHPR++ Sbjct: 242 PLHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSR 301 Query: 296 RG 297 RG Sbjct: 302 RG 303 >UniRef50_A9KMU3 Integrase family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMU3_CLOPH Length = 291 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 90/292 (30%), Positives = 154/292 (52%), Gaps = 2/292 (0%) Query: 4 LHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRS 63 + ++E +L Y + + TL Y+ L+ F EN + ++ TM+ +F ++ Sbjct: 1 MEKEIEDFLIYQKNIKNATDNTLSAYRIDLKRWYLFLQENSVSESKKITETMINSFLLQQ 60 Query: 64 RRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLL 123 ++G A++ L ++RSF +L+ +L +P + + PK P+ + + + LL Sbjct: 61 EKEGKSKATVNRNLVSIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLL 120 Query: 124 DI-DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIG 182 D N +RD+AMLE+MY G+++SE+ GL + ++L+ G V V + K R +P G Sbjct: 121 SAPDSNTKRGLRDKAMLELMYATGMKVSEIGGLKKEDINLKFGCVTVR-ELKKNRVVPFG 179 Query: 183 RNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKL 242 + A A +E +L D E LFL + G+ ++ + V K +G + GL + P + Sbjct: 180 QAARASLEAYLASEDDVRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAI 239 Query: 243 RHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 294 R+SFA HM+E+ DL ++EL+GHAN++ TQ YT Y HPRA Sbjct: 240 RNSFAIHMIENGADLNSMKELMGHANITATQHYTKQRIGETFGTYHKTHPRA 291 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.199 0.716 Lambda K H 0.267 0.0612 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,755,932,251 Number of Sequences: 3077464 Number of extensions: 170540905 Number of successful extensions: 433409 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7333 Number of HSP's successfully gapped in prelim test: 5850 Number of HSP's that attempted gapping in prelim test: 394345 Number of HSP's gapped (non-prelim): 16881 length of query: 298 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 170 effective length of database: 646,480,964 effective search space: 109901763880 effective search space used: 109901763880 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 94 (40.2 bits)