 |
| Job Description | P25736 | | Confidence | 7.81% | Date | Thu Jan 5 11:42:21 GMT 2012 |
| Rank | 21 | Aligned Residues | 25 |
| % Identity | 28% | Template | d1js9c_ |
| SCOP info | Nucleoplasmin-like/VP (viral coat and capsid proteins)
| Positive stranded ssRNA viruses
| Bromoviridae-like VP
|
| Resolution | 3.40 |
|
|   |   |
61 | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
V | D | L | Q | S | C | G | Y | Q | V | R | K | N | E | N | R | A | S | R | V | E | W | E | H | V | V | P |
| Query Conservation |   |
  |   |   |   |
|
|
|
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|
|
|
|
|
|
|   |
|   |   |
|   | . | . |
|   |
|
|
|
|
|
|   |
|
| Template Sequence |   |
I | Y | L | Y | A | S | E | A | V | P | A | K | A | V | V | . |
. |
V | H | L | E | V | E | H | V | R | P |
| Template Known Secondary structure |   |
 |  |  |  |  | S | S |
| B |
| T | T | S | B |
| . | . |
|  |  |  |  |  |  |  |
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
154 | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
. | 170 | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|