| 1 | c3hefB_ |
|
 |
99.9 |
26 |
PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit
|
| 2 | c6paxA_ |
|
 |
93.7 |
22 |
PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
|
| 3 | d1pdnc_ |
|
 |
93.5 |
24 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain |
| 4 | c2rn7A_ |
|
 |
93.4 |
18 |
PDB header:unknown function Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
|
| 5 | d6paxa1 |
|
 |
92.1 |
22 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain |
| 6 | d2jn6a1 |
|
 |
91.4 |
24 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like |
| 7 | d1k78a1 |
|
 |
90.4 |
24 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain |
| 8 | c2r0qF_ |
|
 |
89.9 |
25 |
PDB header:recombination/dna Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
|
| 9 | c2gm4B_ |
|
 |
88.9 |
15 |
PDB header:recombination, dna Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
|
| 10 | c2elhA_ |
|
 |
87.8 |
14 |
PDB header:dna binding protein Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
|
| 11 | c1u78A_ |
|
 |
87.3 |
14 |
PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
|
| 12 | d2ao9a1 |
|
 |
77.3 |
13 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Nanomeric phage protein-like |
| 13 | d2coba1 |
|
 |
76.8 |
29 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain |
| 14 | c2ao9H_ |
|
 |
76.1 |
13 |
PDB header:structural genomics, unknown function Chain: H: PDB Molecule:phage protein;
PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579
|
| 15 | d2ezia_ |
|
 |
72.9 |
16 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain |
| 16 | d2ezha_ |
|
 |
71.6 |
16 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain |
| 17 | c2l5aA_ |
|
 |
69.4 |
26 |
PDB header:nuclear protein Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
|
| 18 | d1hlva1 |
|
 |
69.0 |
9 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding |
| 19 | c2k27A_ |
|
 |
68.7 |
27 |
PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
|
| 20 | d1ijwc_ |
|
 |
66.1 |
25 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain |
| 21 | d1hcra_ |
|
not modelled |
65.6 |
25 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain |
| 22 | c3gziA_ |
|
not modelled |
64.9 |
16 |
PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
|
| 23 | c1hlvA_ |
|
not modelled |
63.5 |
13 |
PDB header:dna binding protein/dna Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
|
| 24 | d1jhfa1 |
|
not modelled |
63.1 |
12 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain |
| 25 | c2xroE_ |
|
not modelled |
52.6 |
29 |
PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
|
| 26 | d2v0ea1 |
|
not modelled |
51.9 |
19 |
Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like |
| 27 | d2ckaa1 |
|
not modelled |
49.9 |
25 |
Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like |
| 28 | c2ckaA_ |
|
not modelled |
49.9 |
25 |
PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
|
| 29 | c3nrgA_ |
|
not modelled |
49.9 |
8 |
PDB header:transcription Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution
|
| 30 | d2ckca1 |
|
not modelled |
47.8 |
19 |
Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like |
| 31 | c2ckcA_ |
|
not modelled |
47.8 |
19 |
PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
|
| 32 | d2hkua1 |
|
not modelled |
46.2 |
17 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 33 | d1rkta1 |
|
not modelled |
44.4 |
12 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 34 | c1z4hA_ |
|
not modelled |
42.8 |
14 |
PDB header:protein binding, dna binding protein Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
|
| 35 | d1sh0a_ |
|
not modelled |
42.7 |
24 |
Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase |
| 36 | d1yioa1 |
|
not modelled |
40.7 |
16 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) |
| 37 | d1y9qa1 |
|
not modelled |
40.0 |
21 |
Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain |
| 38 | d2qzga1 |
|
not modelled |
39.9 |
35 |
Fold:Bromodomain-like Superfamily:Ta0600-like Family:Ta0600-like |
| 39 | d1a04a1 |
|
not modelled |
39.8 |
13 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) |
| 40 | d2qsba1 |
|
not modelled |
39.6 |
20 |
Fold:Bromodomain-like Superfamily:Ta0600-like Family:Ta0600-like |
| 41 | c3hosA_ |
|
not modelled |
38.3 |
15 |
PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
|
| 42 | d3c07a1 |
|
not modelled |
38.3 |
13 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 43 | c2g7uB_ |
|
not modelled |
36.6 |
16 |
PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
|
| 44 | d2dl6a1 |
|
not modelled |
36.5 |
25 |
Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like |
| 45 | c1zljE_ |
|
not modelled |
35.7 |
16 |
PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
|
| 46 | c2jpcA_ |
|
not modelled |
35.1 |
25 |
PDB header:dna binding protein Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
|
| 47 | c2nx4A_ |
|
not modelled |
32.8 |
11 |
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
|
| 48 | c2krfB_ |
|
not modelled |
30.5 |
19 |
PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
|
| 49 | d1bw6a_ |
|
not modelled |
30.4 |
11 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding |
| 50 | c2b43D_ |
|
not modelled |
30.3 |
24 |
PDB header:viral protein Chain: D: PDB Molecule:non-structural polyprotein;
PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge
|
| 51 | c1x3uA_ |
|
not modelled |
28.7 |
19 |
PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
|
| 52 | d1zk8a1 |
|
not modelled |
28.5 |
13 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 53 | d2g7la1 |
|
not modelled |
27.6 |
13 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 54 | d1j1va_ |
|
not modelled |
27.2 |
21 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV |
| 55 | d1adra_ |
|
not modelled |
26.9 |
15 |
Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors |
| 56 | d1p4wa_ |
|
not modelled |
26.6 |
15 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) |
| 57 | c2y31A_ |
|
not modelled |
26.6 |
14 |
PDB header:transcription Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
|
| 58 | d2v0fa1 |
|
not modelled |
26.2 |
23 |
Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like |
| 59 | d2fq4a1 |
|
not modelled |
25.9 |
16 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 60 | d1vi0a1 |
|
not modelled |
25.8 |
11 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 61 | c2q0oA_ |
|
not modelled |
25.3 |
13 |
PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
|
| 62 | d1utxa_ |
|
not modelled |
25.0 |
7 |
Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like |
| 63 | d2g3ba1 |
|
not modelled |
25.0 |
7 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 64 | c3fiwB_ |
|
not modelled |
24.8 |
17 |
PDB header:transcription regulator Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
|
| 65 | c3r4kD_ |
|
not modelled |
24.6 |
13 |
PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
|
| 66 | d1nera_ |
|
not modelled |
24.2 |
14 |
Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors |
| 67 | c2id3A_ |
|
not modelled |
23.8 |
15 |
PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2)
|
| 68 | d1l3la1 |
|
not modelled |
23.7 |
13 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) |
| 69 | c3omtA_ |
|
not modelled |
23.2 |
9 |
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
|
| 70 | c3g7rB_ |
|
not modelled |
22.9 |
7 |
PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor
|
| 71 | d2fd5a1 |
|
not modelled |
22.7 |
9 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 72 | c2o0yB_ |
|
not modelled |
22.4 |
13 |
PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
|
| 73 | c3b7hA_ |
|
not modelled |
22.0 |
9 |
PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
|
| 74 | d1stza1 |
|
not modelled |
21.7 |
9 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain |
| 75 | d1l8qa1 |
|
not modelled |
21.2 |
18 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV |
| 76 | d2o7ta1 |
|
not modelled |
20.6 |
14 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 77 | d2id3a1 |
|
not modelled |
20.0 |
15 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 78 | d1u5ta1 |
|
not modelled |
19.6 |
20 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain |
| 79 | d1fsea_ |
|
not modelled |
19.5 |
9 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators) |
| 80 | d2gena1 |
|
not modelled |
19.2 |
8 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 81 | d1joga_ |
|
not modelled |
19.1 |
14 |
Fold:Four-helical up-and-down bundle Superfamily:Nucleotidyltransferase substrate binding subunit/domain Family:Family 1 bi-partite nucleotidyltransferase subunit |
| 82 | d2gfna1 |
|
not modelled |
19.1 |
9 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 83 | d2i10a1 |
|
not modelled |
18.7 |
11 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 84 | c2rnjA_ |
|
not modelled |
18.5 |
22 |
PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain
|
| 85 | c1mkmA_ |
|
not modelled |
18.4 |
18 |
PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
|
| 86 | c3bs3A_ |
|
not modelled |
18.3 |
16 |
PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
|
| 87 | c2zcxA_ |
|
not modelled |
18.0 |
15 |
PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815
|
| 88 | d1v7ba1 |
|
not modelled |
17.8 |
17 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 89 | d1qtma2 |
|
not modelled |
17.7 |
21 |
Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:DNA polymerase I |
| 90 | c3pvpA_ |
|
not modelled |
17.5 |
22 |
PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna
|
| 91 | c2g7gA_ |
|
not modelled |
17.4 |
6 |
PDB header:transcription Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
|
| 92 | c2ia2D_ |
|
not modelled |
17.2 |
8 |
PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
|
| 93 | c1h0mD_ |
|
not modelled |
16.6 |
10 |
PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
|
| 94 | c2g7lA_ |
|
not modelled |
15.7 |
15 |
PDB header:transcription Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
|
| 95 | c3tqnC_ |
|
not modelled |
15.6 |
31 |
PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, gntr family;
PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii.
|
| 96 | d1t56a1 |
|
not modelled |
15.5 |
11 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain |
| 97 | c4a4zA_ |
|
not modelled |
15.4 |
20 |
PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2;
PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
|
| 98 | d1mkma1 |
|
not modelled |
15.1 |
18 |
Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain |
| 99 | c2wuiA_ |
|
not modelled |
14.9 |
9 |
PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
|