Phyre 2 Results for P39301

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P39301
Date | Thu Jan 5 11:59:07 GMT 2012
Unique Job ID | 930d74af5bac7008

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3qnqD_
Top template information
PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Confidence and coverage
Confidence: | 92.3% | Coverage: | 57%
265 residues ( 57% of your sequence) have been modelled with 92.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | E | I | L | Y | N | I | F | T | V | F | F | N | Q | V | M | T | N | A | P | L | L | L | G | I | V | T | C | L | G | Y | I | L | L | R | K | S | V | S | V | I | I | K | G | T | I | K | T | I | I | G | F | M | L | L | Q | A | G | S | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | I | L | T | S | T | F | K | P | V | V | A | K | M | S | E | V | Y | G | I | N | G | A | I | S | D | T | Y | A | S | M | M | A | T | I | D | R | M | G | D | A | Y | S | W | V | G | Y | A | V | L | L | A | L | A | L | N | I | C | Y | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | R | R | I | T | G | I | R | T | I | M | L | T | G | H | I | M | F | Q | Q | A | G | L | I | A | V | T | L | F | I | F | G | Y | S | M | W | T | T | I | I | C | T | A | I | L | V | S | L | Y | W | G | I | T | S | N | M | M | Y | K | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | Q | E | V | T | D | G | C | G | F | S | I | G | H | Q | Q | Q | F | A | S | W | I | A | Y | K | V | A | P | F | L | G | K | K | E | E | S | V | E | D | L | K | L | P | G | W | L | N | I | F | H | D | N | I | V | S | T | A | I | V | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | T | I | F | F | G | A | I | L | L | S | F | G | I | D | T | V | Q | A | M | A | G | K | V | H | W | T | V | Y | I | L | Q | T | G | F | S | F | A | V | A | I | F | I | I | T | Q | G | V | R | M | F | V | A | E | L | S | E | A | F | N | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | I | S | Q | R | L | I | P | G | A | V | L | A | I | D | C | A | A | I | Y | S | F | A | P | N | A | V | V | W | G | F | M | W | G | T | I | G | Q | L | I | A | V | G | I | L | V | A | C | G | S | S | I | L | I | I | P | G | F | I | P | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | F | F | S | N | A | T | I | G | V | F | A | N | H | F | G | G | W | R | A | A | L | K | I | C | L | V | M | G | M | I | E | I | F | G | C | V | W | A | V | K | L | T | G | M | S | A | W | M | G | M | A | D | W | S | I | L | A | P | P | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | .
Sequence |  | M | Q | G | F | F | S | I | G | I | A | F | M | A | V | I | I | V | I | A | L | A | Y | M | F | F | A | G | R | A | L | R | A | E | E | D | A | E | K | Q | L | A | E | Q | S | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3qnqD_ |

### PDB 3qnq chain D

Region: 198 - 464
Aligned: 265
Modelled: 267
Confidence: 92.3%
Identity: 11%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2
2 |
| d2oara1 |

### PDB 2oar chain A domain 1

Region: 371 - 463
Aligned: 93
Modelled: 93
Confidence: 90.7%
Identity: 13%
Fold: Gated mechanosensitive channel
Superfamily: Gated mechanosensitive channel
Family: Gated mechanosensitive channel

Phyre2
3 |
| c2oarA_ |

### PDB 2oar chain A

Region: 371 - 463
Aligned: 93
Modelled: 93
Confidence: 89.4%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)

Phyre2
4 |
| c3hzqA_ |

### PDB 3hzq chain A

Region: 371 - 454
Aligned: 83
Modelled: 84
Confidence: 77.2%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state

Phyre2
5 |
| d5ruba2 |

### PDB 5rub chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 15.4%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
6 |
| d1gk8a2 |

### PDB 1gk8 chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 14.3%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
7 |
| d1bwva2 |

### PDB 1bwv chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 11.7%
Identity: 29%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
8 |
| d1rbla2 |

### PDB 1rbl chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 11.4%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
9 |
| d2d69a2 |

### PDB 2d69 chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 11.0%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
10 |
| c2kncA_ |

### PDB 2knc chain A

Region: 406 - 461
Aligned: 54
Modelled: 56
Confidence: 10.3%
Identity: 19%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2
11 |
| d8ruca2 |

### PDB 8ruc chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 9.8%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
12 |
| c2bbjB_ |

### PDB 2bbj chain B

Region: 390 - 450
Aligned: 50
Modelled: 61
Confidence: 9.8%
Identity: 22%
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter

Phyre2
13 |
| d1bxna2 |

### PDB 1bxn chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 9.6%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
14 |
| d1geha2 |

### PDB 1geh chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 9.1%
Identity: 29%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
15 |
| d1svda2 |

### PDB 1svd chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 9.1%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
16 |
| d1otsa_ |

### PDB 1ots chain A

Region: 379 - 463
Aligned: 85
Modelled: 85
Confidence: 8.3%
Identity: 12%
Fold: Clc chloride channel
Superfamily: Clc chloride channel
Family: Clc chloride channel

Phyre2
17 |
| d1ej7l2 |

### PDB 1ej7 chain L domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 6.9%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
18 |
| c2zviB_ |

### PDB 2zvi chain B

Region: 198 - 226
Aligned: 29
Modelled: 29
Confidence: 5.8%
Identity: 7%
PDB header:isomerase
Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate
PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis

Phyre2
19 |
| d1wdda2 |

### PDB 1wdd chain A domain 2

Region: 196 - 226
Aligned: 31
Modelled: 31
Confidence: 5.5%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RuBisCO, large subunit, small (N-terminal) domain
Family: Ribulose 1,5-bisphosphate carboxylase-oxygenase

Phyre2
20 |
| c1w2wJ_ |

### PDB 1w2w chain J

Region: 282 - 313
Aligned: 30
Modelled: 32
Confidence: 5.5%
Identity: 30%
PDB header:isomerase
Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits

Phyre2

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3qnqD_ |
|  | 92.3 | 11 | PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
2 | d2oara1 |
|  | 90.7 | 13 | Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel
3 | c2oarA_ |
|  | 89.4 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl)
4 | c3hzqA_ |
|  | 77.2 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: structure of a tetrameric mscl in an expanded intermediate2 state
5 | d5ruba2 |
|  | 15.4 | 19 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
6 | d1gk8a2 |
|  | 14.3 | 23 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
7 | d1bwva2 |
|  | 11.7 | 29 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
8 | d1rbla2 |
|  | 11.4 | 23 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
9 | d2d69a2 |
|  | 11.0 | 16 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
10 | c2kncA_ |
|  | 10.3 | 19 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
11 | d8ruca2 |
|  | 9.8 | 23 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
12 | c2bbjB_ |
|  | 9.8 | 22 | PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter
13 | d1bxna2 |
|  | 9.6 | 19 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
14 | d1geha2 |
|  | 9.1 | 29 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
15 | d1svda2 |
|  | 9.1 | 16 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
16 | d1otsa_ |
|  | 8.3 | 12 | Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel
17 | d1ej7l2 |
|  | 6.9 | 23 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
18 | c2zviB_ |
|  | 5.8 | 7 | PDB header:isomerase Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis
19 | d1wdda2 |
|  | 5.5 | 23 | Fold:Ferredoxin-like Superfamily:RuBisCO, large subunit, small (N-terminal) domain Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
20 | c1w2wJ_ |
|  | 5.5 | 30 | PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0