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20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
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| Query SS confidence |   |
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| Query Sequence |   |
D | A | L | K | P | P | S | M | Y | K | V | I | L | V | N | D | D | Y | T | P | M | E | F | V | I | D | V | L | Q | K | F | F | S | Y | D | V | E | R | A | T | Q | L | M | L | A | V | H | Y | Q | G | K | A | I | C | G | V | F | T | A | E | V | A | E | T | K | V | A | M | V | N | K | Y | A | R | E | N | E | H | P | L |
| Query Conservation |   |
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|   |   |   |   |   |   |   |
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|   |   |
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| Alig confidence |   |
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| Template Conservation |   |
|   |   |   |   |
|   |   |
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|   |
|   |
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|   |   |   |   |   |   |   |
|   |   |
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|   |
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|   |   |   |   |   |
|   |
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|   |
|   |   |   |   |   |   |   |
|
|   |   |
|   |
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| Template Sequence |   |
D | A | L | K | P | P | S | M | Y | K | V | I | L | V | N | D | D | Y | T | P | M | E | F | V | I | D | V | L | Q | K | F | F | S | Y | D | V | E | R | A | T | Q | L | M | L | A | V | H | Y | Q | G | K | A | I | C | G | V | F | T | A | E | V | A | E | T | K | V | A | M | V | N | K | Y | A | R | E | N | E | H | P | L |
| Template Known Secondary structure |   |
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|  |  |  |  |  |  |  |
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| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
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| Template Predicted Secondary structure |   |
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|  |  |  |  |  |  |
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| Template SS confidence |   |
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|   |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
|   |
|   |   |
100 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |
|
| Query SS confidence |   |
|
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| Query Sequence |   |
L | C | T | L | E | K | A |
| Query Conservation |   |
|   |   |
|
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|   |
|
| Template Sequence |   |
L | C | T | L | E | K | A |
| Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
| Template SS confidence |   |
|
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|   |   |
100 | . | . | . | . | . | . |
|   |