162 c1sr9A_ Probab=88.20   E-value=2.1  Score=22.81  Aligned_columns=196  Identities=19%

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH-----HHHH
Q ss_conf             65689899999999999879979998783378987668968999999999999997449849997799899-----9999
Q batch____        32 GTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEV-----IRES  106 (282)
Q Consensus        32 g~~~~~~~a~~~a~~~~~~GAdiIDIG~eSTrPga~~v~~~eE~~rl~p~i~~i~~~~~vpISIDT~~~~v-----~~aa  106 (282)
                      |..++.++-++-|+.|.+.|-+.|++|        -|.....+.+.+..+.+.....-++.++.-+....-     ++++
T Consensus        70 g~~~s~e~Kl~ia~~L~~~Gv~~IEvG--------~P~as~~d~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~eal  141 (573)
T c1sr9A_          70 IDPXSPARKRRXFDLLVRXGYKEIEVG--------FPSASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQAC  141 (573)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTCSEEEEE--------CTTTCHHHHHHHHHHHHTTCSCTTCEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEE--------EECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf             899898999999999997698747876--------305897799999999860167787489997267668999999987


Q ss_pred             HHCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEC
Q ss_conf             97099468707668888799999972994999878989987110775001799999999999999997699876788807
Q batch____       107 AKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDP  186 (282)
Q Consensus       107 l~~G~~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~~~~~~~e~~~~l~~~i~~a~~~GI~~~~IilDP  186 (282)
                      ..+|.++|+-.....+.-+......                     ..+..++..........+...+.--.....-|.|
T Consensus       142 ~~a~~~~v~i~~s~Sd~h~~~~l~~---------------------t~ee~l~~~~~~v~~a~~~g~~~~~~~~~v~fs~  200 (573)
T c1sr9A_         142 SGAPRAIVHFYNSTSILQRRVVFRA---------------------NRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSP  200 (573)
T ss_dssp             TTCSEEEEEEEEECCHHHHHHTSCC---------------------CHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEE
T ss_pred             HHCCCCEEEEEECCCHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf             5079859999921898999878299---------------------9899999999999999983000024526999853


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHH--------CCCCEEEEECCHHHHHHHH---------------CCCHHHHHHHHHHHH
Q ss_conf             88764797899999998999996--------6998899635446877673---------------899888355799999
Q batch____       187 GFGFGKNLSHNYSLLARLAEFHH--------FNLPLLVGMSRKSMIGQLL---------------NVGPSERLSGSLACA  243 (282)
Q Consensus       187 GiGf~k~~~~~~~ll~~i~~~~~--------lg~Pil~G~SrKsfig~~~---------------~~~~~~r~~~t~~~~  243 (282)
                      -.+.-.+.+.-+++++.......        +.+|=.+|.....-+..++               +...-+-.+.-.+.+
T Consensus       201 ed~~r~~~e~l~ev~~~~~~aGa~~~~~~~~I~L~DTvG~~~P~~~~~~i~~l~~~~p~~~~v~i~~H~HND~GlAvANa  280 (573)
T c1sr9A_         201 ESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEXTTPNVYADSIEWXSRNLANRESVILSLHPHNDRGTAVAAA  280 (573)
T ss_dssp             ETGGGSCHHHHHHHHHHHHHHHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf             76774898999999999997278533573089970785647978999999999873357557358998246533388999


Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             9999759989991
Q batch____       244 VIAAMQGAHIIRV  256 (282)
Q Consensus       244 ~~a~~~Ga~iiRv  256 (282)
                      ..|+..|++.+-+
T Consensus       281 laAv~aGA~~ve~  293 (573)
T c1sr9A_         281 ELGFAAGADRIEG  293 (573)
T ss_dssp             HHHHHTTCCEEEE
T ss_pred             HHHHHCCCCEEEE
T ss_conf             9999749788765