BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (120 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 160 2e-38 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 138 5e-32 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 136 2e-31 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 136 2e-31 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 136 3e-31 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 131 7e-30 UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legione... 128 4e-29 UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas pha... 128 5e-29 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 128 5e-29 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 127 9e-29 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 125 4e-28 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 125 5e-28 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 123 1e-27 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 120 1e-26 UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pas... 114 7e-25 UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acin... 114 1e-24 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 112 4e-24 UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Hae... 110 1e-23 UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacte... 108 8e-23 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 107 1e-22 UniRef50_C9KJA0 Crossover junction endodeoxyribonuclease RusA fa... 106 2e-22 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 103 1e-21 UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leg... 103 2e-21 UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimi... 103 3e-21 UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ0... 101 7e-21 UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=... 101 8e-21 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 101 9e-21 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 100 1e-20 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 100 1e-20 UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiace... 100 2e-20 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 99 2e-20 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 99 2e-20 UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella... 99 2e-20 UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replicat... 99 2e-20 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 98 7e-20 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 98 1e-19 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 97 2e-19 UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus c... 96 3e-19 UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacil... 95 7e-19 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 95 9e-19 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 94 1e-18 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 92 6e-18 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 91 8e-18 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 91 1e-17 UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobacu... 89 5e-17 UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus... 88 8e-17 UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacter... 86 3e-16 UniRef50_Q87BV3 Uncharacterized protein PD_1345 n=13 Tax=Xylella... 86 4e-16 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 85 5e-16 UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (H... 85 5e-16 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 85 7e-16 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 85 8e-16 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 85 8e-16 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 84 1e-15 UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteri... 83 2e-15 UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Ta... 83 2e-15 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 83 2e-15 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 83 3e-15 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 82 4e-15 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 82 6e-15 UniRef50_Q9PCT9 Uncharacterized protein XF_1666 n=1 Tax=Xylella ... 82 6e-15 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 81 1e-14 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 80 2e-14 UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium... 80 2e-14 UniRef50_A9W5I1 Putative uncharacterized protein n=1 Tax=Methylo... 80 2e-14 UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium... 80 2e-14 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 79 3e-14 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 79 4e-14 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 79 5e-14 UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira R... 79 5e-14 UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium ... 79 5e-14 UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA fa... 79 5e-14 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 78 6e-14 UniRef50_UPI0001C369A4 prophage Lp2 protein 24 n=1 Tax=Clostridi... 78 9e-14 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 78 9e-14 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 78 1e-13 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 77 2e-13 UniRef50_Q1GG05 Putative uncharacterized protein n=2 Tax=Ruegeri... 77 2e-13 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 77 2e-13 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 76 2e-13 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 76 2e-13 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 76 3e-13 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 76 3e-13 UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp... 76 4e-13 UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingell... 74 1e-12 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 74 1e-12 UniRef50_B6W9X0 Putative uncharacterized protein n=1 Tax=Anaeroc... 74 2e-12 UniRef50_A6F0M3 Putative uncharacterized protein n=1 Tax=Marinob... 74 2e-12 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 73 2e-12 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 73 2e-12 UniRef50_Q2KZ60 Phage-related protein n=2 Tax=Bordetella avium 1... 73 3e-12 UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease... 73 3e-12 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 73 4e-12 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 73 4e-12 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 73 4e-12 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 72 5e-12 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 72 5e-12 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 72 6e-12 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 72 6e-12 UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus ... 72 6e-12 UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV... 71 1e-11 UniRef50_Q4EJG1 Gp63 n=7 Tax=root RepID=Q4EJG1_LISMO 71 1e-11 UniRef50_C5B0R6 Putative uncharacterized protein n=2 Tax=Alphapr... 70 2e-11 UniRef50_Q5YSM1 Putative uncharacterized protein n=1 Tax=Nocardi... 70 2e-11 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 70 2e-11 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 70 3e-11 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 69 4e-11 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 69 5e-11 UniRef50_Q88UN4 Prophage Lp2 protein 24 n=2 Tax=Lactobacillus pl... 69 5e-11 UniRef50_Q6AC63 Phage-related protein n=1 Tax=Leifsonia xyli sub... 68 6e-11 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 68 7e-11 UniRef50_B3WDE7 Putative uncharacterized protein n=3 Tax=Lactoba... 68 7e-11 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 68 8e-11 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 68 8e-11 UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovi... 68 9e-11 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 67 1e-10 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 67 2e-10 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 66 2e-10 UniRef50_A5MC55 Putative uncharacterized protein n=2 Tax=Strepto... 66 3e-10 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 66 3e-10 UniRef50_Q9CIB4 Prophage pi1 protein 15 n=4 Tax=root RepID=Q9CIB... 66 3e-10 UniRef50_C3PI76 Putative uncharacterized protein n=3 Tax=Coryneb... 66 4e-10 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 66 4e-10 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 66 5e-10 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 65 5e-10 UniRef50_UPI00004C2387 hypothetical protein SpyoM01000040 n=1 Ta... 65 5e-10 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 65 6e-10 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 65 8e-10 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 63 2e-09 UniRef50_C7Q4H8 Endodeoxyribonuclease RusA n=1 Tax=Catenulispora... 63 3e-09 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 62 6e-09 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 62 6e-09 UniRef50_C7R1F1 Endodeoxyribonuclease RusA n=1 Tax=Jonesia denit... 62 6e-09 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 62 7e-09 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 61 9e-09 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 61 1e-08 UniRef50_Q9AZ79 RUS n=6 Tax=root RepID=Q9AZ79_9CAUD 61 1e-08 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 61 1e-08 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 61 1e-08 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 60 2e-08 UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acineto... 60 3e-08 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 59 4e-08 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 58 7e-08 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 58 8e-08 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 57 2e-07 UniRef50_C0W5T7 Gp53 family protein n=1 Tax=Actinomyces urogenit... 57 2e-07 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 56 4e-07 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 56 5e-07 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 55 7e-07 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 55 7e-07 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 55 7e-07 UniRef50_B5GC73 Predicted protein n=1 Tax=Streptomyces sp. SPB74... 54 9e-07 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 54 1e-06 UniRef50_Q854T6 Gp64 n=2 Tax=unclassified Siphoviridae RepID=Q85... 54 1e-06 UniRef50_B1MZE0 dTDP-glucose pyrophosphorylase n=2 Tax=Leuconost... 53 4e-06 UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobaci... 53 4e-06 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 51 1e-05 UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 51 1e-05 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 51 1e-05 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 50 2e-05 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 50 2e-05 UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence ... 50 2e-05 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 49 4e-05 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 49 4e-05 UniRef50_A1B8H5 Putative uncharacterized protein n=1 Tax=Paracoc... 49 4e-05 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 49 4e-05 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 49 6e-05 UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthom... 48 7e-05 UniRef50_UPI0001BC49BC hypothetical protein F3_00332 n=1 Tax=Fus... 48 8e-05 UniRef50_C3PIE5 Putative uncharacterized protein n=1 Tax=Coryneb... 48 9e-05 UniRef50_B1BBK8 Putative uncharacterized protein n=1 Tax=Clostri... 47 2e-04 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 46 3e-04 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 46 4e-04 UniRef50_A7H208 Crossover junction endodeoxyribonuclease RusA su... 44 0.002 UniRef50_A7A5C0 Putative uncharacterized protein n=1 Tax=Bifidob... 44 0.002 UniRef50_B2A5E1 Putative uncharacterized protein n=1 Tax=Natrana... 43 0.002 UniRef50_B1I2Y2 Putative uncharacterized protein n=1 Tax=Candida... 43 0.003 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 43 0.004 UniRef50_B1I7E1 RUS n=5 Tax=root RepID=B1I7E1_STRPI 42 0.005 UniRef50_C5RA86 Possible dTDP-glucose pyrophosphorylase n=1 Tax=... 42 0.006 UniRef50_Q8R8F6 Putative uncharacterized protein n=1 Tax=Thermoa... 42 0.007 UniRef50_Q7P5T9 Putative uncharacterized protein FNV0869 n=2 Tax... 41 0.008 UniRef50_Q8ZS47 All7665 protein n=2 Tax=Nostocaceae RepID=Q8ZS47... 41 0.008 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 41 0.009 UniRef50_A7H0V1 Crossover junction endodeoxyribonuclease RusA su... 41 0.016 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 40 0.027 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 160 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 118/120 (98%), Positives = 119/120 (99%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 MNTYSITLPWPPSNNRYYRHNRGRTH+SAEGQAYRDNV RIIKNAMLDIGLAMPVKIRIE Sbjct: 1 MNTYSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGLAMPVKIRIE 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE Sbjct: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI--GLAMPVKIRIE 60 + S+TLP+PPS N Y+R+ +G+T +S +G+ YR + I + + V + ++ Sbjct: 4 SVSLTLPFPPSVNTYWRNLKGKTLISEKGRRYRASAIAAIYQQLPRRSDAITGIVSVTVK 63 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 P RRD+DN KA FDALT A W DD QV + V KGGR E+TI +GN Sbjct: 64 MFPPTSHRRDIDNYLKAPFDALTHANIWKDDDQVKHADIAWCDVVKGGRFEITIRPIGN 122 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 4 YSITLPWPPSNNRYYRHNRGRTH-----VSAEGQAYRDNVARIIKNAMLDIGLAM--PVK 56 + LP+PPS N Y+RH +SA G+ ++ I + + P Sbjct: 1 MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLRRLPKPTSAPAS 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 + I PD R RDLDN KA FDALT AG W DD+QV V PV G++E+TI Sbjct: 61 VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITI 118 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 4 YSITLPWPPSNNRYYR-----HNRGRTHVSAEGQAYRDNVARIIKNAML--DIGLAMPVK 56 LP+PPS N Y+R +G+ VS G+ ++ V I + A P + Sbjct: 1 MKFILPFPPSVNSYWRSPNKGTAKGKLLVSEAGRKFKHAVRAAIIEQLKAVPKPSASPAE 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + I H PD RRRDLDN KA FDALT AG W DD+QV + KGGR+E+TIT Sbjct: 61 VVIVLHPPDYRRRDLDNYNKALFDALTYAGIWEDDSQVKRMTIEWGGNAKGGRVEITITA 120 Query: 117 MG 118 Sbjct: 121 FN 122 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 47/115 (40%), Positives = 72/115 (62%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M Y ITLP+PPS N Y+ H +GR + +G YR +V I L + + +++R+ Sbjct: 1 MRRYHITLPFPPSVNHYWYHAKGRHFIKEKGIQYRRSVMAEIMRLRLAVRFSGQIRVRVV 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + PDRR+RDLDNL KA DAL AG + DD Q++D +++ +GG+L++T+T Sbjct: 61 ANPPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHIIRGEKVQGGKLDITLT 115 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 1 MNT-YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M LP+PP+ N Y+R VS G+ YR VA I++ L + L+ + I+I Sbjct: 1 MTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKI 60 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 PD+RRRDLDN+ KA DALT AG +DD Q + +V+ GGRL + I + Sbjct: 61 IAEPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPVSGGRLGVKIYPI 118 >UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legionella pneumophila RepID=Q9AKY6_LEGPN Length = 120 Score = 128 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M+ LP+PP+ N YY+ +S +G YR + ++ + + I Sbjct: 1 MDILRFQLPYPPTINHYYKRTPKGLALSTKGIQYRHDAFYLLHKHRNHCK-DKRLAVTIN 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 PD+RRRD+DN+ K D++ AG + DD Q+ +++ V K G + + I+E + Sbjct: 60 LFPPDKRRRDIDNILKCLLDSMQHAGVYDDDNQIDMLTIIRRHVVKDGSVAVWISECSSS 119 >UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas phage OP2 RepID=Q2NPB1_9CAUD Length = 134 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M +TLPWPP+ N +R +GR +SA + Y+ VA+++ L + + + Sbjct: 9 MTDLRLTLPWPPTLNSIWRAVQGRIVLSAAARDYKRAVAKLLPVGKAAAPLTGRLMVWVT 68 Query: 61 CHMPD---RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + P +R+ D+ N +K D LT WLDD+Q+ +++ GR E TI + Sbjct: 69 LYPPSTMGKRKWDIANREKIMIDCLTDQRIWLDDSQIDALVLLRGGADGIGRAEFTIQTI 128 Query: 118 GNE 120 ++ Sbjct: 129 TDD 131 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M T + LPWPPS N Y+ ++S + + + ++K + + V + + Sbjct: 1 MKTLDVLLPWPPSINHYWGARGRGRYLSPQARRWHKEAWAVLKAQ--GVRYSGEVAVYVF 58 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 H PDRR+RDLDN+ KA DAL AG DD QV V + P + G++ L + E+ Sbjct: 59 AHPPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVRLVVGEV 115 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 72/119 (60%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 MN Y LP+PPS N Y+R + ++S +GQ YR +V +II+ LDI ++I++ Sbjct: 1 MNEYQFVLPYPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVI 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +PD RRRDLDN+ K D+L AGF DD Q D RV++ GGRL + ITE+ + Sbjct: 61 ADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELES 119 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 125 bits (314), Expect = 4e-28, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 1 MNTYSIT-LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD---IGLAMPVK 56 M+ I LP+PPS N Y+RHN T++S + +A++ A+I+ V Sbjct: 1 MDENMIIELPFPPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNEMRQKSGCQKFEGEVS 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP---VTKGGRLELT 113 + ++ ++P++ +RD+DN K D+LT A W DD+QV + K+ KGG+ + Sbjct: 61 VLMQLYLPNKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEKIDNNGGVKGGKCVVA 120 Query: 114 ITE 116 I E Sbjct: 121 INE 123 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 4/113 (3%) Query: 6 ITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP 64 + LP+PP+ N Y++H R G+ +++A+G+ ++ V + +N V + ++ + P Sbjct: 4 LELPYPPTVNHYWKHTRNGKHYITAKGKTFQQEVRWLTRNRPK---FIGKVLLEVDIYPP 60 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 D R+RD+DN+ KA DALT AG +DD+ V K+P KGG++ + I E Sbjct: 61 DNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPSIKGGKVIVRIKEF 113 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 4 YSITLPWPPSNNRYYRHNR-----GRTHVSAEGQAYRDNVARIIKNAMLD--IGLAMPVK 56 +++LP+PPS N Y+R GR VS G+ YR I + + + Sbjct: 1 MNLSLPFPPSVNGYWRAPNRGKLAGRHLVSERGRRYRAEAVAEILEQLRGMPQPVKGDLA 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + P R +RDLDN KA FD++ AG W+DD+Q+ PVTKGG Sbjct: 61 VSVMFCPPSRAKRDLDNYFKALFDSVINAGIWIDDSQIKKLEAEWGPVTKGGECIF 116 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 2/112 (1%) Query: 5 SITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP 64 + LPWPPSNN YYRH RT +S + AYR V ++K+ +L +++ E + P Sbjct: 4 ELYLPWPPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKDRVLP-EFTGEIELYAEFYPP 62 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV-TKGGRLELTIT 115 D+R+RDLDNL K D L AG + DD+Q+V +VK GR + I Sbjct: 63 DKRKRDLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEPHRPDGRAYVRIK 114 >UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pasteurellaceae RepID=A3MZM1_ACTP2 Length = 122 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 51/120 (42%), Positives = 67/120 (55%), Gaps = 7/120 (5%) Query: 4 YSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH 62 I LP+PPS N Y+RH + G ++S EG+A+R V I K VKI+I + Sbjct: 5 LEIALPYPPSVNHYWRHTKAGTHYISREGKAFRAKVLNICKQF---DPFNGAVKIQIYVY 61 Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVV-KMPVTKGGRLELTITEMGN 119 PD R RD DNLQKA FDALT +G DD + DYRVV + KGG + + I + + Sbjct: 62 YPDNRSRDPDNLQKALFDALTASGLIKDDNNKIIKDYRVVGMDEIRKGGMVVIKIKGLDD 121 >UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acinetobacter baumannii AYE RepID=B0V859_ACIBY Length = 168 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 PPS N Y+ + R +S + + + V +++ +K+ + H P R+ RD Sbjct: 66 PPSVNHYWVASGKRRFLSNKARDFHALVRQVVPAHKS----TARLKLEVTFHFPTRQCRD 121 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +DN KA D+L K G +DD Q + V + V KGG ++L ++E+ Sbjct: 122 IDNYLKATIDSLVKCGLCVDDEQFDELLVKRGNVIKGGLIKLKVSEV 168 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARI----IKNAMLDIGLAMPVK 56 ++T+ LP PPS N YYR ++S E + +R +V I N + Sbjct: 3 VHTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKRWFDKEQRLA 62 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG--GRLELTI 114 + + + +RR D+DN KA D L + G + +D Q+ D RVV+ V K G + + Sbjct: 63 MTVTLYPTNRRSFDIDNRLKALLDVLQEIGVYHNDNQIDDLRVVRGAVVKRELGFCVVEV 122 Query: 115 TEM 117 Sbjct: 123 KPC 125 >UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Haemophilus parasuis 29755 RepID=B0QX07_HAEPR Length = 134 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 21/134 (15%) Query: 2 NTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 I LP+PPS N Y+RH R G+ ++S +G+ +R+ ++ V + + Sbjct: 3 RELEIALPFPPSVNHYWRHTRQGKHYISDKGKRFRELALLAC---FAELPFDGLVAVDVR 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVV---------KMPVT---- 105 ++PDRR RDLDNL K D+LT A DD+ VV + K Sbjct: 60 VYLPDRRDRDLDNLWKVIMDSLTHAKILKDDSWKYVVKESIEAVGEVRVNDKGEPEFIPE 119 Query: 106 --KGGRLELTITEM 117 K GR+ + I E+ Sbjct: 120 IVKDGRVVVKIKEL 133 >UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q091_9GAMM Length = 126 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%) Query: 1 MNTY----SITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPV 55 M T+P PPS N Y +H RG +S E + Y+ + + I + Sbjct: 1 MKKLNLLAQFTMPVPPSVNGYLKHDKRGIARLSDEAREYKMDAYQAIGRYAPSEPSTKRL 60 Query: 56 KIRIECHMPDRR---RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + H + +RDLDN QK DAL A F+ +D Q+ + + V GG +E+ Sbjct: 61 ALELIIHFGSKAIDAKRDLDNCQKLILDALEYARFFNNDQQLDEIVCKRGEVINGGLIEV 120 Query: 113 TITEM 117 T+ E+ Sbjct: 121 TLCEI 125 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 P S N+ YR GR ++ +G+ + A + L PV + ++ + + D Sbjct: 10 PVSVNQLYR---GRRFLTTDGKRTKLLNAVSARKQYRGAPLEGPVCVELQVYFKSKASSD 66 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +DN+ KAA D+LT W DD Q+ + K+ R+ELT++++ Sbjct: 67 IDNVCKAALDSLTGI-LWKDDRQIQELHAYKLQDKLRPRIELTLSQL 112 >UniRef50_C9KJA0 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJA0_9FIRM Length = 125 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAM----PVKI 57 IT+P P + N + + +G ++ G+ + N ++ AM + G V + Sbjct: 3 KELFITIPVPITENHAFFYRKGMKILNKRGKEWMKNAEDSMRVAMEEQGWQTVNNEKVIV 62 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + + PD+R RD N K D++ AG +D ++ + + RLE+ I Sbjct: 63 ELWHYWPDKRVRDCSNSLKLLCDSIQNAGIVNNDRWLLCRQQDFSVDRENPRLEMRIRRF 122 Query: 118 GNE 120 NE Sbjct: 123 NNE 125 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 27/147 (18%) Query: 1 MNTYSITLPWPPSNNRYY--RHNRGR-------THVSAEGQAYRDNVARIIKNAMLDIGL 51 M +++LP+P S NRY+ R + + T+V+ E +AY++ VA + K+A + L Sbjct: 1 MPKITLSLPYPISANRYWASRIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVREPL 60 Query: 52 AMPVKIRIECHMPDRRRR------------------DLDNLQKAAFDALTKAGFWLDDAQ 93 A V+I + + DLDN QK DAL D Q Sbjct: 61 ACRVQIDYTLYPKRPQDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDGWQ 120 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 V + R+ +T+T + E Sbjct: 121 VRRIHAERGVPDGEARIVVTVTTLLEE 147 >UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZX46_RHILW Length = 119 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 1 MNTYSITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M ++S LP+PPS N +R+ RG +A+ A+ + + ++ L V Sbjct: 1 MKSFSAILPFPPSVNNLFRNIARGGRVKTAKYCAWEKQADAAMPSGIVK--LQGEVIAVY 58 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM--PVTKGGRLELTITE 116 PDRRRRD+ N +KA D L + G DD Q+VD R+ K G + + E Sbjct: 59 VLGRPDRRRRDIANTEKAVGDTLVRWGVLEDDCQIVDIRLRWGRADEIKPGECRVELVE 117 >UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimia haemolytica RepID=A7JUB5_PASHA Length = 119 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 3 TYSITLPWPPSNNRYYRHNRG-RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LP+PPS N Y+R R V G+ Y+ +N V+I+ + Sbjct: 1 MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQNKPK---FGGQVEIKCDV 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 + PD R RDLDNL K D+L + +DD++ V KGG + + I E Sbjct: 58 YFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGNQKGGAVIVRIKE 114 >UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ09_9CAUD Length = 131 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 4/105 (3%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 YS+ LP+PPS NR YR GR +S + Y V + + +A +++ + Sbjct: 4 TRYSLILPFPPSLNRAYRAVAGRVVLSKAARQYGVAVRNALPVGRAE-RIAGRLRVVVTV 62 Query: 62 HMPDR---RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 H P R R D+ N +K DALTKAGFW DD+Q+ +RV + Sbjct: 63 HPPARLVGRAWDVANREKLLSDALTKAGFWRDDSQIDSFRVDRGE 107 >UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=2 Tax=Aquificaceae RepID=RUSA_AQUAE Length = 126 Score = 101 bits (251), Expect = 8e-21, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MNTYSI---TLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M + LP P S NRY R G+ + ++ + + + Sbjct: 5 MEEIELYLSKLPVPKS-NRYIRPKGGKVFKPPRVTNWEARAIWELREQFKGDAIDYEISV 63 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 I +P+RR+RD+DN+ K+ +D + KAG +D + + VK + + I Sbjct: 64 DITLILPNRRKRDIDNMLKSLWDVMEKAGVIKNDNLIFEVHTVKKIEKGKEGVIIKIRPF 123 Query: 118 GN 119 + Sbjct: 124 QS 125 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 10 WPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRR 69 PPS N + + + S G+ + + +K +K+ I + R +R Sbjct: 1 MPPSVNTLWVNKHRGRYKSKRGKEFEEIAKYELKKQYKGEVTKKRLKVEIWLYFKTRAKR 60 Query: 70 DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 D+DN KA D+L DD + D V K+ ++ + I E GN Sbjct: 61 DIDNYNKAILDSLKGI-VIEDDELIDDLAVHKIKGHGKDKVYIEILERGN 109 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 NTYSITLP-WPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIG-LAMPVKIR 58 + I +P PP+ N +YR +R G + +AEG+A++ V +++ A + A V + Sbjct: 21 KIFEIEIPGLPPTVNHFYRTSRTGVRYKTAEGKAWQAGVVLLMRTANKNYQAYAGEVGLY 80 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 I+ D+RR D+DN KA D L AG +D QV++ ++ + + I ++ Sbjct: 81 IDLMSTDKRRWDVDNRIKALQDCLASAGVIKNDTQVIELHARRVHGD-DEKTNVMIYKLA 139 Query: 119 N 119 Sbjct: 140 E 140 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 7/112 (6%) Query: 6 ITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP 64 + LPWPP S N Y ++ E A+RD VA + + ++ PV++RI + P Sbjct: 9 LCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGHKAEV----PVELRIRLYPP 64 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTI 114 D RRRD DN+ K DAL +AG DD V YR+ GG +E+ Sbjct: 65 DNRRRDADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEWGQARPGGAIEVEW 116 >UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiaceae RepID=A6TU92_ALKMQ Length = 141 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 3 TYSITLPW-PPSN-NRYYRHNRGRTHVSAEGQ-----AYRDNVARIIKNAMLDIGLAMPV 55 T+P P S N H G+ + G+ AY + +A I L + Sbjct: 1 MLKFTIPGRPVSKSNFKLTHKNGQVWMPKSGKHSRYVAYENMIAGYINQQYAGPQLTQQL 60 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + + PDRR DL N K+ D + K+G +D Q+ + ++ R+E+ + Sbjct: 61 ITILRLYFPDRRMGDLHNYPKSICDGIEKSGIISNDKQLRPVLLFDFIDSENPRVEIELY 120 Query: 116 EM 117 + Sbjct: 121 DF 122 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARI---------IKNAMLDIGLA 52 +LP PPS N Y R +S E QA++ V R I L + Sbjct: 1 MVVQFSLPLPPSINSQYVTVGNRRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQ 60 Query: 53 MPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + ++ + RRDLD K D++ ++D +VVD +VK RLE+ Sbjct: 61 GYIALFLDFYFETPLRRDLDGGLKITQDSIC-TSLGINDNRVVDIHLVKRIDPLHPRLEV 119 Query: 113 TITEMGN 119 + + + Sbjct: 120 ELEALSD 126 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 1 MNTYSITLPWPP-SNNRYYR-HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 M +P+ P S N ++R G ++S G+ +RDNV IK VK++ Sbjct: 1 MKQ-RFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKLYKYKT-YEKSVKVK 58 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 ++ + D+R RDLDN K D+ ++DD Q+ K + + E+ Sbjct: 59 LDLYFADKRTRDLDNYFKGILDSFKG-FLYVDDKQIDKIEATKHIGAGKNYFIIEVEEL 116 >UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W1_HAMD5 Length = 91 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRD-NVARIIKNAMLDIGLAMPVKIRIEC- 61 I LP+PPS N Y+ R ++S + ++ + K++M + P + + Sbjct: 1 MRIELPFPPSVNHYWVRTARRVYLSEAAKRFQRLTAIEVAKSSMKQGHRSFPGDVSVALT 60 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDD 91 H+PD+R RD+DN K DALTKAG W DD Sbjct: 61 HLPDKRVRDVDNYPKGVLDALTKAGIWSDD 90 >UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replication protein, complete cds n=3 Tax=Bacillus subtilis RepID=O52945_BACSU Length = 185 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%) Query: 1 MNTYSITLPWPPSNNRYYRHN---RGRT-----HVSAEGQAYRDNVARIIKNAMLDIGLA 52 M + + P PPS N Y + GR + S E + Y+ +K+ M + Sbjct: 1 MKSLRLVSPLPPSVNNYLSYKVSSNGRRKFVQAYPSEETKIYKSFFTDYVKDQMNEQEWE 60 Query: 53 MPVKIRIEC----HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP-VTKG 107 P K ++ DR+R+D +N K FD T+AG +LDD V ++ ++ Sbjct: 61 QPEKGKLVFVKIKFFLDRKRKDPNNFLKVPFDVFTEAGVYLDDD-VALPVAERVYIDSQN 119 Query: 108 GRLELTITEMGN 119 RLE I E N Sbjct: 120 PRLEFEIYEASN 131 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 98.0 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%) Query: 2 NTYSITLPWPPSNNRYYRHN----RGR----THVSAEGQAYRDNVARIIKNAMLDIGLAM 53 T P PPS N Y + G+ ++ + E + Y+ N+ +IK + Sbjct: 3 EKLVFTSPIPPSVNHYLAYRTIIKNGKPMAMSYKTKEAKDYQKNIIELIKKEVEKQRWVK 62 Query: 54 P------VKIRIECHMPDRRRRDLDNLQKAAFDALTKAG-FWLDDAQVVDYRVVKMPVTK 106 + + + P R D +N K DA+T W+DD Q+ + + K Sbjct: 63 SDNKFQHYYMDVVFYFP-RVDMDANNYFKCLADAITDTELVWIDDTQLCERVMGIYYDNK 121 Query: 107 GGRLELTITEMG 118 R+E+ I + Sbjct: 122 NPRMEIEIKPVN 133 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 12 PSNNRYYRH----NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA---MPVKIRIECHMP 64 PS N YR+ R +S E + + + + + G V +R+ + P Sbjct: 11 PSVNHMYRNAYKGKRAVRVLSQEAREWYEETVILASDWRKKNGWQTAGGKVIVRLWFYFP 70 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 DRRRRD N K DAL A F+ DD + + + R+E+ + Sbjct: 71 DRRRRDTHNGLKILLDALEDARFYDDDKHALPQVMDYGIDRERPRVEIELE 121 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M + LP+P S NRY+R R R SAE AYR+ V RI + A + V + + Sbjct: 56 MRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGA-MPSEGAVAVYVR 114 Query: 61 CHMP-------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK-MPVTKGGRLEL 112 ++ DLDN K DAL + +D QV GG L + Sbjct: 115 LIPKANKDGGANKTVIDLDNALKVTLDALQGVA-YHNDRQVRRIAADYADEPVAGGGLAV 173 Query: 113 TITEM 117 + E+ Sbjct: 174 EVGEL 178 >UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR43_9FIRM Length = 124 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLA----MPV 55 M +TLP PS N YR+ R ++ G+A+++ I K A G + Sbjct: 1 MTMLKLTLPIVPSVNHCYRNVSIHRRVLTPIGKAWQEKAQYIAKAAAAKQGWRFSKRQKL 60 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + + PD R RD+ N +K D L + +D V+ + R+E+ I Sbjct: 61 VMEYWTYWPDYRTRDVHNQEKLLLDTLEGI-LYDNDKWVLPRAMDFAVDKVNPRIEILIY 119 Query: 116 EM 117 + Sbjct: 120 PL 121 >UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ1_ALIAD Length = 131 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 5 SITLPWPPSNNRYYRHN------RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP---- 54 + LP PPS N YR + ++++ Q +R + A + + G MP Sbjct: 3 RLILPLPPSVNHAYRTYVHPQTGQRIRVLTSKAQKFRRDAAYLALRWRQETGWTMPQPGT 62 Query: 55 -VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 V +R+ P RRR D N +K DAL + +D V+ + K RLE+ Sbjct: 63 KVVLRLWYFWPSRRRMDTHNREKVLLDALEGV-LYPEDRWVLIQEMDFEVDRKRPRLEIE 121 Query: 114 I 114 + Sbjct: 122 V 122 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 94.5 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 25/141 (17%) Query: 2 NTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 T+P P R +R R T+ A+ + Y+ + L P+KI Sbjct: 1 MIIEFTIPGKPVGQGRPRFSRHRGYVQTYDPAKSRQYKAIATMCAQRVYSGEPLETPLKI 60 Query: 58 RIECHM------PDRRR-------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 ++ + ++RR D+DN+ K D+L + DD QV+ Sbjct: 61 TVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLNGV-IYHDDKQVIQLV 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 K K R+E+T+ E+ Sbjct: 120 AFKAYAEK-PRVEVTVEELEQ 139 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 25/141 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRGR------THVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 +TLP+P S NRY+R R T VS E +AY++ V R + A + V Sbjct: 1 MIELTLPYPISANRYWRTYLPRGCAAPVTTVSPEARAYQNRVRRAAREAGVLCPFPGRVA 60 Query: 57 IRIECHMPD-----RRRR-------------DLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + + RR+R DLDN QK FDA+ + +D + Sbjct: 61 VSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGI-VYENDNLIRRIE 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 + R+ +T+ + + Sbjct: 120 GERAVPDGDARVLVTVEPIED 140 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 18/132 (13%) Query: 3 TYSITLPWPPSNNRYY------RHNRGRT------HVSAEGQAYRDNVARIIKNAMLDIG 50 + P PPS N Y G+ + ++E + Y+ + +K + Sbjct: 21 ILKLVSPIPPSVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKKYKKEFIKYVKEEVRKQK 80 Query: 51 LAMPVKIRIECHMP-----DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 + + DR +D N K DAL ++DD ++ + Sbjct: 81 WDITCTKDKHFYFDTIFHFDRVDKDEQNYYKCLCDALNGLA-YIDDRNILTRCFKIDYDS 139 Query: 106 KGGRLELTITEM 117 R+E+TI + Sbjct: 140 INPRIEITIHPV 151 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 23/141 (16%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 M ++I +P P +R+ +T+ + + Y+ +A + K ++ P++I+ Sbjct: 1 MIKFTINIPPHPQERPRFRNAGNFVQTYDPPKSKEYKKKIANVAKMYAPGTPISTPIQIK 60 Query: 59 IECH---MPDR----------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + R D+DN KA DAL F DD ++V+ Sbjct: 61 LIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALNGIMF-SDDGKIVELIA 119 Query: 100 VKMPVTKGGRLELTITEMGNE 120 K R E++ITE+ +E Sbjct: 120 YKRYSDL-PRTEVSITELVSE 139 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 21/126 (16%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM------- 63 P + +R +G +++ + +AY+D I+KN L +K++ + Sbjct: 25 PVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKNQYKGEPLMGALKVKTTFYRSVQKSVS 84 Query: 64 ---PDRR---------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 +RR + D+DNL KA DA T W DD Q+V + KM + R+E Sbjct: 85 KAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGV-VWHDDNQIVSVEMDKMYAEE-PRVE 142 Query: 112 LTITEM 117 + + E+ Sbjct: 143 MEVHEL 148 >UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U8U8_HYDS0 Length = 150 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP----VKIRI 59 I+ P NRY R G + ++ + I + + P V + Sbjct: 8 LFISEPPKGKANRYIRQKGGAVFKPWKISSWETKASWEISLQLKKLKFKEPFSCKVSVEA 67 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +PD+RRRD+DN+ K +D L K +D + + +K + + I Sbjct: 68 IIFLPDKRRRDIDNMLKTLWDVLEKNDVIKNDNLIYEINTIKHVEKGLQGIFIKIKPYEE 127 Query: 120 E 120 + Sbjct: 128 Q 128 >UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TAJ4_RICCO Length = 499 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%) Query: 25 THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK 84 +++ G +R VA I+ + + + M DRR DLDN KA DAL Sbjct: 1 MYITKSGVDFRKQVAEIVAERSALKFGTSRLFMAVRLCMRDRRASDLDNRMKALCDALEH 60 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGG 108 AG + DD Q+ + +V+ P+ KGG Sbjct: 61 AGVFDDDEQIDELVIVRGPIVKGG 84 >UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KYT0_METC4 Length = 187 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + + I P PPS N Y + G + +A+R A +I +A P + I Sbjct: 32 VPSVEIRFPLPPSTNSLYFNVAGGRRKTPRYRAWRQQAALLIDVQRPG-RMAGPCDVTIY 90 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 D DN K DA AG DD Q R + + + +T Sbjct: 91 LPPFS---GDADNRIKPCLDAAVAAGVLADDGQRYVRRALVEVDRAATEVRMVLT 142 >UniRef50_Q87BV3 Uncharacterized protein PD_1345 n=13 Tax=Xylella fastidiosa RepID=Y1345_XYLFT Length = 153 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 12/124 (9%) Query: 5 SITLPWP-----PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 S+TLPWP P+ ++ + + Y + +AR + L + + + + I Sbjct: 20 SLTLPWPSKDLSPNARVHWTRRSKAV---KQARGYAEVMARRAGWSGLSLPVEGRLDLWI 76 Query: 60 ECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + P R D DN+ K D + A +DD + V + +++ V G++ +TIT Sbjct: 77 SFYPPTRCLPDDDNMLARFKPYRDGIADA-LGIDDRRFVSHPLIEDEVRHAGQVVITITG 135 Query: 117 MGNE 120 + + Sbjct: 136 ITQQ 139 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 27/142 (19%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHV----SAEGQAYRDNVARIIKNAMLDIGL----AM 53 TLP P R R V + Y+ ++A I + A + GL Sbjct: 1 MRIKFTLPGKPVAQGRPRFYRKGNFVVATDPKPSKVYKADIAYIAQKACEEAGLDGLFEG 60 Query: 54 PVKIRIECHMP----------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 P+ I+I + P +R D DN+ K+ D L + DD Q+ + Sbjct: 61 PLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV-LYHDDGQISEL 119 Query: 98 RVVKMPVT--KGGRLELTITEM 117 V K +G R+E+ + +M Sbjct: 120 IVRKRIAAQGEGPRIEVELYKM 141 >UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) n=1 Tax=Persephonella marina EX-H1 RepID=C0QUS6_PERMH Length = 148 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 1 MNTYSITLPWPPSNNR------YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP 54 MN Y ++ P NR + + R V + + ++ L P Sbjct: 1 MNIYFLSFIPPSKANRVKINLRAFSKSGKRYIVPKDVSLKINRAIWELQKQSSGEPLKDP 60 Query: 55 VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 V+I+I+ +PDRRRRDLDN+ K D L AG DD + + K + + + + Sbjct: 61 VEIKIDFILPDRRRRDLDNIMKTLGDCLVYAGIIEDDNLIFKQTLEKHIIKGKEGVIIRL 120 Query: 115 TEMGN 119 + Sbjct: 121 KKYNE 125 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 5/118 (4%) Query: 4 YSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH 62 T+P P R + G + + Y V N L PV + ++ + Sbjct: 1 MHFTVPGRPVPKYRPRVGKHGNIYTPQNCREYERTVGLYASNVFP-QPLTGPVTLGVKFY 59 Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 RR DLDN KA D L W DD QVV + R E+ + +GN+ Sbjct: 60 F-SRRPGDLDNYVKAISDGLNGIA-WQDDRQVVKLFASLKRGSPE-RAEVVVQRIGND 114 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 84.9 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 1 MNTYSITLPWPPSNNRYYRHNR--GRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKI 57 M +S T+P P R + GR + + +Y +A AM + P+ I Sbjct: 1 MMEFSFTVPGVPVGKGRPRFVKATGRAYTPEKTASYESLIAYAASQAMRGAQPINAPIGI 60 Query: 58 RIECHMP------DRRR---------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 +++ P +R+ D DN+ KA DAL W DD+QV + K+ Sbjct: 61 KVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGI-VWADDSQVARTSIAKV 119 Query: 103 PVTKGG 108 G Sbjct: 120 YGDVPG 125 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 84.5 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 25/141 (17%) Query: 2 NTYSITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 IT+P P + R + + Y+ VA L +++ Sbjct: 1 MEIKITVPGQPVPQGRPKFTTIGGHARAYDPKKSVDYKRIVAYHAMQHKPKQLLEGELEV 60 Query: 58 RIECHMP-----DRR--------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 I + +R + D DN K DA+ W DD Q+VD Sbjct: 61 EILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAMKGI-IWKDDGQIVDLI 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 K +K R+E+T+ +G Sbjct: 120 ARKYYSSK-PRIEITVRTLGE 139 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%) Query: 1 MNTYSITLPWPPSNNRYYR-HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M + I + P R GR + E + + + + ++ + + PVK+ I Sbjct: 1 MAYFKIEIQTKPVPKARPRLGANGRMYTPKETREFEELIGWTTRSVVRK-PIEKPVKVNI 59 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 + + + R D DN+ KA D L+ F DD QVVD R+ K+ ++ ++I E + Sbjct: 60 DVY--SKTRADFDNIAKAILDGLSGVAFI-DDRQVVDLRIRKLTPVNCEKIVISIREARS 116 >UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VTC7_9CLOT Length = 124 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%) Query: 12 PSNNRYYRHNRGRTHVSAEGQ-AYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 P N Y R H +A+ + + I ++ PV +R D RRRD Sbjct: 10 PGLNEYISAERSNRHSAAKMKKQMEYAIGMIARSQHRKAHFKRPVVMRYLWVEKD-RRRD 68 Query: 71 LDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITEMGNE 120 LDN+ K DA AG D Q +V + K R+E+ I E+ ++ Sbjct: 69 LDNVAFAKKFIQDAFVHAGILEGDGQRHIVGFTDSFSVDHKNPRVEIEIEEISHD 123 >UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNX0_CLOBO Length = 209 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 15 NRYYRHNRGRTHVS-------AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD-R 66 N + +GR + Y + +A + +I + ++ + + Sbjct: 19 NFKLSNTKGRAILPYNSGKYHDRYGVYEELIAYEARLQNPNIFFTESLIAILKVYYKSQK 78 Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 R D N+ K+ FD + K+G ++DAQ+ + + +K R EL + Sbjct: 79 RHPDTTNIPKSIFDGIEKSGLIINDAQIRHLIIEEHYDSKNPRFELELY 127 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 13/114 (11%) Query: 19 RHNRGRT--HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR---------- 66 R NRG + + + R + + D + P+++ + + Sbjct: 41 RVNRGIPIFYEPEKLKKTRALLMERLDEHKPDEPMHGPLRLVVTWCFKKKGKHVDGEYKT 100 Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 + D+DN+ K D +T+ GFW DD VV K G + + I EM + Sbjct: 101 TKPDVDNMLKLLQDCMTRLGFWDDDRFVVSLISEKYWADVPG-IYIEIKEMNQD 153 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 25/140 (17%) Query: 4 YSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 I P R + R + + Y+ + + K D L P+ + + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRLYDPKKVSTYKKQLGMMCKFQYKDKPLDGPLIVSL 60 Query: 60 ECHM-----PDRR--------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 + + ++ + D DN K+ D L W DD Q+V Sbjct: 61 KFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLNGL-LWEDDNQIVKIVAE 119 Query: 101 KMPVTKGGRLELTITEMGNE 120 K + R+E+ + + Sbjct: 120 KYYSDR-PRIEIEVERLEQN 138 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 26/142 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLD-IGLAMP- 54 M + + T+P P + R T+ + +Y + V AM + Sbjct: 1 MTSITFTVPGTPVGKGRPKFARRGKFVTTYTPEKTASYENLVKLAAAKAMDGRQPIDGAA 60 Query: 55 -VKIRIECHMPDR-----------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 V I + P + D+DN+ K FDA+ + W DD QV+D Sbjct: 61 QVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFDAMNEI-VWQDDKQVID 119 Query: 97 YRVVKMPVTKGGRLELTITEMG 118 K ++ R E+ IT++G Sbjct: 120 LSCYKRY-SETARAEVKITQIG 140 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVK 56 N +P R T++ + +R+ + M V Sbjct: 198 NLVRFCIPGTVVPKARPRVTSNGTYMPNRYREWRNRAEIELYRQMSQFHSTHKFPLQKVA 257 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLEL 112 + + R DLDN+ A DALT AG +DD + V + TK + + Sbjct: 258 VSLRFFGNHRTNSDLDNMAGACLDALTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWI 317 Query: 113 TITEM 117 I + Sbjct: 318 EIQPL 322 >UniRef50_Q9PCT9 Uncharacterized protein XF_1666 n=1 Tax=Xylella fastidiosa RepID=Y1666_XYLFA Length = 137 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 12/121 (9%) Query: 5 SITLPWP-----PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 S+TLPWP P+ ++ + + Y + +AR L + + + + I Sbjct: 20 SLTLPWPSKDLSPNARVHWTRRSKAV---KQARGYAEIMARRAGWGGLSLPVEGRLDLWI 76 Query: 60 ECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + P RR D DN+ K D + A +DD + V + +V+ GG + + IT Sbjct: 77 SFYPPTRRLPDDDNMLARFKPYRDGIADA-LGIDDRRFVSHPLVEDDRRTGGEVVVRITG 135 Query: 117 M 117 + Sbjct: 136 I 136 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 50/144 (34%), Gaps = 29/144 (20%) Query: 1 MNTYS---ITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGL-A 52 M+ T+P P R R R A+ AY VA + A+ L A Sbjct: 1 MHDLRPVVFTVPGEPVGKGRPRIGRVGAHARMFTPAKTVAYEGLVAMAAQEALAGRSLIA 60 Query: 53 MPVKIRIECHMPDRRRR-------------------DLDNLQKAAFDALTKAGFWLDDAQ 93 PV I + P R D DN KA DAL W DD Q Sbjct: 61 GPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDALNGVA-WKDDTQ 119 Query: 94 VVDYRVVKMPVTKGGRLELTITEM 117 VV+ + K + R+E+ I + Sbjct: 120 VVNVMLAKRYA-EVPRVEVKIVPL 142 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 27/143 (18%) Query: 1 MNTYSITLPWPPSNNRYYRH--NRGRTHV--SAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M+ T+ P R G+ H+ A+ + ++ VA + + + PV Sbjct: 1 MDCIKFTVYGEPVAQGRPRGSIRNGKVHMRDPAKSKYFKQYVALVASQHRPETIITGPVS 60 Query: 57 IRIECHMP---------------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + ++ + P + D+DN K DAL + DD+QVV Sbjct: 61 MDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDALNHL-IYKDDSQVV 119 Query: 96 DYRVVKMPVTKGGRLELTITEMG 118 D +V K + R+E+ I E+ Sbjct: 120 DLKVSKFYSEE-PRVEVMIREVS 141 >UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q119T1_TRIEI Length = 270 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 9/123 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVK 56 ++ +P R T++ + + +R+ I + + L Sbjct: 145 TIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAA 204 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLEL 112 I I R DLDNL A DALT AG DD + + +P K + + Sbjct: 205 ISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQDDRLSCIPKLNIEYIPHIKKIGVWI 264 Query: 113 TIT 115 I Sbjct: 265 EIK 267 >UniRef50_A9W5I1 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens PA1 RepID=A9W5I1_METEP Length = 155 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 ++ +I LP PPS N + H GR S A+ +V + + + + Sbjct: 21 VDEVTILLPVPPSVNALHDHAPGRPVRSKAYSAWIHDVGWRLIEQRPG-RVPGAYILLLA 79 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + DLDNL KA D L G +D + + Sbjct: 80 V-PEAETKADLDNLSKATRDLLQAHGLIDNDRKARREVLDWH 120 >UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C6946 Length = 115 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 30 EGQAYRDNVAR-----IIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK 84 + + Y + V+ I + + + I+ + PD+R RD+ N K+ D + K Sbjct: 9 KFREYEELVSWSSVKAISTSKYKNNKFNENLTTVIKLYFPDKRNRDIHNYPKSICDGIEK 68 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +G +D + ++ + R+E+ + Sbjct: 69 SGIIKNDKLLKPVVIMDFIDKENPRVEIELYPASE 103 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 79.1 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 27/144 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSA----EGQAYRDNVARIIKNAMLDIGLAMPVK 56 M I LP P R R +V +AY+ V ++ A + P+ Sbjct: 1 MEEMRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKVYLRKAKPKLIEKGPIM 60 Query: 57 IRIECHMPDR---------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + ++ ++ DLDN KA DA + +D Q+ Sbjct: 61 AHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAVTDAAEGI-LYKNDGQIA 119 Query: 96 DYRVVKMPVTKGGRLELTITEMGN 119 K+ + R E+ I + Sbjct: 120 VMVCQKLYSMRQ-RTEIEIMSLEE 142 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 14/130 (10%) Query: 1 MNTYSITLPWPPSN---NRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M + + + P S N R + + + L +++ Sbjct: 1 MIEFFMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQV 60 Query: 58 RIECHMPDRRR----------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 + P + + D DNL KA +D +T+ G+W DD Q+ K + Sbjct: 61 VTKWCFPIKAKHHDGEPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWAQRP 120 Query: 108 GRLELTITEM 117 G + + I E+ Sbjct: 121 G-IYVKIEEV 129 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 28/146 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNR-GR---THVSAEGQAYRDNVARIIKNAMLDIGL-AMPV 55 M I + P R R GR + E + +R + +I+ A L P+ Sbjct: 1 MIYQKIVINLEPKAQSRPRFARCGRGVVAYEKKEMRVWRAKCSELIEEAFRAEELMEGPL 60 Query: 56 KIRIECH--MPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQV 94 KI + + P ++ D+DN KA D++T + DD QV Sbjct: 61 KIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSMTGV-IFKDDGQV 119 Query: 95 VDYRVVKMPVTKGGRLELTITEMGNE 120 V+ R K+ K R+E I EM + Sbjct: 120 VECRARKLYSLK-PRIEFEIKEMLDN 144 >UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira RepID=B5VV93_SPIMA Length = 278 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 9/111 (8%) Query: 17 YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAM-----PVKIRIECHMPDRRRRDL 71 R T++ + +R+ + + + L + I R D+ Sbjct: 167 RPRVTSNGTYLPPRYREWRNRAEVELYRQISERNLTNKFPLRRAAVTIRLFGNHRTNSDI 226 Query: 72 DNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLELTITEMG 118 DNL A DALT AG +DD + RV P + + I + Sbjct: 227 DNLAGACLDALTLQGAGVLMDDRLSCLPKLRVEFFPDIPKTGVWIDIEPLS 277 >UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium RepID=A6LQD4_CLOB8 Length = 232 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 15 NRYYRHNRGRTHVS-------AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD-R 66 N + GR + Y +A + +N DI + + + + + Sbjct: 18 NFKLHNLNGRAILPHSSGKYHDRYALYEQEIALLARNQNPDIVFSESLIALLRVYYKSEK 77 Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 R D N+ K+ FD + K+G ++DAQ+ + + R EL + Sbjct: 78 RHPDTINITKSIFDGIEKSGLIINDAQITKIFTEEYYDKENPRFELEL 125 >UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA family protein n=2 Tax=Bacteroides RepID=C9KYW6_9BACE Length = 147 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 6/112 (5%) Query: 13 SNNRY----YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRR 68 N Y + + R + + Y + K ++ K+ I R Sbjct: 13 KANNYQAVPGKDGQKRIIKNDRIREYEKSFCLQCKK-YRGKRISGRFKLFIRVWH-GNIR 70 Query: 69 RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 DLDN K D L +D+ + K + R+E + E+ + Sbjct: 71 FDLDNALKTILDCLQMVEAITNDSLCFEIHAEKRIDRRNPRVEFGMEEINEQ 122 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 23/137 (16%) Query: 2 NTYSITLPWPP--SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 S ++ P + + Y VA+ A D L +++ I Sbjct: 1 MEISFSIDGKPFGKERPRPNRTGHGVYTPERTKMYEYKVAQSASLAFFDEPLDSDIRVCI 60 Query: 60 ECHM-----PDRRR--------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 + +R+ D DN+ KA D + + DD QV++ +V Sbjct: 61 SAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGMNGV-VYKDDKQVIELKVT 119 Query: 101 KMPVTKGGRLELTITEM 117 K K R+++++ E+ Sbjct: 120 KQYAEK-PRVDVSVEEI 135 >UniRef50_UPI0001C369A4 prophage Lp2 protein 24 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C369A4 Length = 165 Score = 78.0 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%) Query: 14 NNRYYRHNRGRTHVSAEGQ-AYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLD 72 N Y NR H + + + V I+ + + + PV ++ + P++R RD D Sbjct: 55 LNDYTAANRTNPHKGGKMKKDNEETVIWAIRQQLRRLHIEKPVFLKFSWYEPNKR-RDHD 113 Query: 73 NLQ----KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 N+ K DAL K G DD V+ + R+E+ I E Sbjct: 114 NVSSFGRKVIQDALVKCGVLKDDGWDYVIGFTDQFFCDRNEPRIEVLIEE 163 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 78.0 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 22/138 (15%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIEC 61 ITLP+ R RG + +AY VA + + AM P+++ IE Sbjct: 4 EVHITLPFAAIGKGRPRVYRGIASTPPKTRAYEHQVATLARAAMRGRLPFDGPIRVLIEI 63 Query: 62 ------HMPDRRR-------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 P RR D+DN KA D + + DD Q+V + K Sbjct: 64 DVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILDGMNGIA-YRDDTQIVIALLSKR 122 Query: 103 PVTKGGRLELTITEMGNE 120 + ++ + + E+ + Sbjct: 123 YAS-DAQVRIAVEEIAGQ 139 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 25/137 (18%) Query: 3 TYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 I +P P R + R++ + + Y+ VA +K+ + V ++ Sbjct: 1 MIRIEVPGEPVPQGRPRFSGRGGFVRSYDPPKSREYKKKVAAAVKDQYHGDPVDYAVHVQ 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + P ++ + D+DN KA DA T W+DDAQ+V + Sbjct: 61 LSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACTGL-LWVDDAQIVSTKT 119 Query: 100 VKMPVTKGGRLELTITE 116 K ++ +E+ + Sbjct: 120 NK-YYSEDPHVEMLVMP 135 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 3/86 (3%) Query: 32 QAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDD 91 + Y N I ++ ++ + +R DLDN K D L G +D Sbjct: 39 KEYEKNFYIQCPERGRMIEGYFRLRAKVYY---NSKRPDLDNSLKILLDCLQMTGTIKND 95 Query: 92 AQVVDYRVVKMPVTKGGRLELTITEM 117 Q V + K K R+E IT + Sbjct: 96 RQCVYIEIEKFVDRKEPRVEYEITPV 121 >UniRef50_Q1GG05 Putative uncharacterized protein n=2 Tax=Ruegeria sp. TM1040 RepID=Q1GG05_SILST Length = 118 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M + +I L WP + + + V A + + A + V + Sbjct: 1 MKSTTIRLSWPRRA--LWDNEKASHMVRAAAKRTQRKEAWALALEAKWPRDPAAV-LTFR 57 Query: 61 CHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 PDRRRRD NL KAA D + A D + PV KGG + + I Sbjct: 58 FCPPDRRRRDTHNLPATMKAAIDGIADAMKVDDVGFRCVFPTEFGPVEKGGAVYIEI 114 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 23/137 (16%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 M + P + G R++ + + Y+ +V ++ L + + Sbjct: 1 MIRIEVAGEPVPQGRPRFSGRGGFVRSYDPPKSKEYKKHVKEEVQQQYHGKPLEGQLLVE 60 Query: 59 IECHMP-----DRRRR--------------DLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + P ++ R D+DN KA DA T W+DDAQ+V + Sbjct: 61 LSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACTGL-LWVDDAQIVSTKT 119 Query: 100 VKMPVTKGGRLELTITE 116 K ++ +E+ + Sbjct: 120 NK-YYSENPHVEMLVIP 135 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 28/145 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT-----HVSAEGQAYRDNVARIIKNAMLDIGLA--M 53 M T T+P P + R + + Y + + + +I Sbjct: 1 METVRFTVPGAPKGKARAKTVRSKKGGTFSYTPEGTMLYENLIKCCYRQESNNIIFNDGQ 60 Query: 54 PVKIRIECHMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 P+K+ I + P ++ D+DN+ K+ DAL K + DD QV Sbjct: 61 PLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILDALNKLA-YRDDTQV 119 Query: 95 VDYRVVKMPVTKGGRLELTITEMGN 119 V + K + R+E+ I E+ N Sbjct: 120 VTLHMEKHYA-EDPRVEVEIEEIKN 143 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 22/130 (16%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM-LDIGLAMPVKIRIECH 62 S T+ P R R T+ + + Y +V + AM V + + Sbjct: 24 VSFTVEGVPVGKARARVTRNGTYTPKKTRRYEHDVRTVAMQAMGALRPCRDAVHVSLVVF 83 Query: 63 MP-------DRR------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 +P +R R DLDN +KA DAL + DD+Q+ D K Sbjct: 84 LPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDALNGV-VYHDDSQICDVVKSKRY 142 Query: 104 VTKGGRLELT 113 + R+ + Sbjct: 143 SDR-PRVVIE 151 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 22/114 (19%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP---------DRRR----- 68 G + + + Y+ +V + ++ L+ P+++ +E + RR+ Sbjct: 2 GHAYDPTKSRNYKQHVKSVASELNIE-PLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKV 60 Query: 69 -----RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 D+DN K+ DALT W DD Q+V+ V K + R+E+ E+ Sbjct: 61 RPTVKPDVDNYYKSVSDALTGI-LWEDDNQIVEIHVGKWYSDQ-PRVEIEAEEI 112 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRR-----DLDNLQKA 77 G T++ A + Y+ +A + + V + C + + D+DN K Sbjct: 5 GSTYMPAAYKVYQKAIAAALPKLDSQYTGELEVILEFVCKPIAKSKFTTPMGDVDNFAKG 64 Query: 78 AFDALTKAGFWLDDAQVVDYRVVKMPVT--KGGRLELTITEM 117 D LT G+W DD Q++ V K + + + I E+ Sbjct: 65 VMDTLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HN12_CYAP4 Length = 130 Score = 76.1 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH 62 T +T P P RH+ ++++ + ++++ + + + + Sbjct: 20 TLHLTGPVTPKARP--RHHGNQSYLPGRYRQWKEDAIAELSQQYEGEPIPQAI---VTIE 74 Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDA--QVVDYRVVKMPVT-KGGRLEL 112 + R DLDN+ A DAL +AG +DD + + +P +G ++++ Sbjct: 75 ILGSARGDLDNISGAVLDALVQAGVLVDDRISCIPRLEICHVPGKIQGAKIQI 127 >UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFT5_9NEIS Length = 145 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 20/124 (16%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK---- 56 M I LP+P N NR G+ + +K L+ + Sbjct: 25 MKQNKIILPYP---NPVLMPNRKH------GRHWASVQQAKVKARQEAFLLSGSLNYTGG 75 Query: 57 -IRIECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKM--PVTKGGRL 110 ++I + PD R+RDLDNL K A D + KA +DDAQ + K+ K R+ Sbjct: 76 GLKITFYTPDARKRDLDNLLAAMKPALDGMAKA-IGVDDAQFRPLLIDKVKAESRKDARV 134 Query: 111 ELTI 114 E+ + Sbjct: 135 EIEL 138 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 73.7 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 48/135 (35%), Gaps = 23/135 (17%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSAEGQ---AYRDNVARIIKNAMLDIGL-AMPVKIRIEC 61 ITL P R V+ Q AY+D + + M L P +++ Sbjct: 2 ITLNIPVEPMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQLYTGPTVVKVLF 61 Query: 62 HMPDRR-----------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 MP + + D+DNL K FDAL K W DD QV K+ Sbjct: 62 SMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTA-WHDDNQVFMVIGAKVYG 120 Query: 105 TKGGRLELTITEMGN 119 K +E+ I + Sbjct: 121 -KEPGIEVQIMGLAE 134 >UniRef50_B6W9X0 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W9X0_9FIRM Length = 128 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Query: 19 RHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAA 78 R R S E Y+ N+ + L+ P+ ++ +MP R DL NL +A Sbjct: 25 RGKRKWIVPSKEFINYQ-NICLYQVKKKDKLQLSTPINLKCLYYMPTNHRVDLVNLLEAT 83 Query: 79 FDALTKAGFWLDDAQ--VVDYRVVKMPVTKG-GRLELTITEMGNE 120 D L +A DD + + ++ K R+E+ + E +E Sbjct: 84 CDILVEAHVIGDDNSKIIKSHDGSRVLYDKDSPRVEIYLEEFIDE 128 >UniRef50_A6F0M3 Putative uncharacterized protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F0M3_9ALTE Length = 141 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 23/132 (17%) Query: 2 NTYSITLPWP-PSNNRYYRHNRGRTHVSAEGQA---YRDNVARIIKNAMLDIGLA----- 52 I LPWP P+ N R H S + +A YR A+ G Sbjct: 5 EKLEILLPWPLPALNP-----NSRGHWSKKARAADMYRYTCKLASIEAIQKSGHDTGALQ 59 Query: 53 ------MPVKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 + + ++ + P+RR RD DN+ K+ D L A D + + Sbjct: 60 DLVKAGGDIHVFLDFYPPNRRARDDDNIIAAFKSGRDGLADALNIDDRHFRTHPFLHRDE 119 Query: 104 VTKGGRLELTIT 115 V G++ + +T Sbjct: 120 VVHMGQVRVVVT 131 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 21/118 (17%) Query: 20 HNRGRTHVSAEGQAYRDNVA-RIIKNAMLDIGLAMPVKIRIECHMP-----DRRR----- 68 RG + ++ +AY + +++ +PV + +EC+ +RR Sbjct: 17 RFRGHAYTDSKTRAYERMIQGAFLQSGESMFPEKVPVGVEVECYFRIPTSYSKRRKGLCR 76 Query: 69 ---------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 D DN+ K DAL + DD QV D + K G + + I E+ Sbjct: 77 ENLELPLKKPDGDNVLKIVCDALNGLA-YKDDTQVSDMIIRKRYGRNEGYIRVRIWEV 133 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Query: 20 HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD----------RRRR 69 + + + + RD ++ + L P+++ ++ P + Sbjct: 31 NGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPIRLTVKWLFPKIKGSTNGQYKTTKP 90 Query: 70 DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 D DNLQK D +T+ GFW DDAQV + K G + + + E+ Sbjct: 91 DTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWADTVG-IYVKVEEL 137 >UniRef50_Q2KZ60 Phage-related protein n=2 Tax=Bordetella avium 197N RepID=Q2KZ60_BORA1 Length = 123 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 14/126 (11%) Query: 3 TYSITLPWPP---SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP---VK 56 S+ LPWPP S N +S + YR A+ V+ Sbjct: 1 MISLLLPWPPKELSPN----FRGHWASISRAKKVYRIAACLTTMRALRHAERFDRLGGVR 56 Query: 57 IRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 I E P R D DNL KAA D ++ A ++D V KGG + +T Sbjct: 57 ITYEFCPPTARAYDRDNLAARMKAATDGISDA-LGMNDRGFHFAPVAIGSKEKGGLVRVT 115 Query: 114 ITEMGN 119 I + Sbjct: 116 IESLKE 121 >UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease n=1 Tax=Arsenophonus nasoniae RepID=D2U459_9ENTR Length = 105 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 30/66 (45%) Query: 51 LAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 + V + + P RRDLDN KA D+LT AG W DDAQV V GG Sbjct: 1 MTTAVSLSLTLFPPTDHRRDLDNFVKAKQDSLTYAGIWQDDAQVKRLTVEWGAKIAGGSA 60 Query: 111 ELTITE 116 IT Sbjct: 61 LAIITP 66 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 31/144 (21%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM 63 +T+P P R + T+ + Y V + + L +KI I+ + Sbjct: 16 IKLTIPGEPCAKGRPRVGKFGTYTPEKTLNYETLVKELYIIQHANKKLQGQLKIDIKAYF 75 Query: 64 P-----------------------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 ++ D DN+ K DAL + DD+Q+ Sbjct: 76 KIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDNVGKIISDALNGLA-YDDDSQI 134 Query: 95 VDYRVVKMPVTKGGRLELTITEMG 118 V V K + R+E+ I+E+ Sbjct: 135 VSAIVEKFY-SNDPRVEVEISEVA 157 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 26/144 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAML-DIGLAMPV 55 M T+S T+P P + + R + E Y + V + K D + V Sbjct: 1 MTTFSFTVPGKPFGKQRPKATRRGVHASVYTPKETVNYENLVVAMFKQKYPLDKPIDGEV 60 Query: 56 KIRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 + I + + DLDN+QK +DAL + DD+ ++ Sbjct: 61 RGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYDALNGIA-YTDDSHIIA 119 Query: 97 YRVVKMPVTKGGRLELTITEMGNE 120 R K R+E+ I N+ Sbjct: 120 MRCAKFYSDV-PRVEVLIEGAVND 142 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 22/135 (16%) Query: 3 TYSITLPWPP--SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 S +P P + GR ++ V I L PV IRIE Sbjct: 1 MVSFVIPGKPFAKQRHNFSRATGRAFTPKATVSFESTVRDIALPKFP-RPLEGPVSIRIE 59 Query: 61 CHM-----------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 P ++ DLDN++K+ D L + F DD+QV K Sbjct: 60 ATFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRIAF-ADDSQVARVVKEKRW 118 Query: 104 VTKGGRLELTITEMG 118 + + + +G Sbjct: 119 G-PVAQTVVVVEPLG 132 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 28/138 (20%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVS----AEGQAYRDNVARIIKNAMLDIG-LAMPVKIR 58 +TL P R R + + + + +R++ +I N + L ++ R Sbjct: 1 MKLTLNIEPKPQSRPRFARRGSFTTTYEDKDMKTWRNHCQLLIANQYMGQPILEGALRTR 60 Query: 59 IECHM---------------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + ++ P ++ D+DN +KA +D+++ + DD Q+ + Sbjct: 61 LRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDSMSGI-VFQDDGQIALH 119 Query: 98 RVVKMPVTKGGRLELTIT 115 V K + R+E+ I Sbjct: 120 DVGKFY-SLNPRIEVEIE 136 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Query: 28 SAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIECHMPD-----RRRR-------DLDNL 74 S + + +RD V I A+ LA PV I MP +RRR D+D L Sbjct: 116 STKVKPWRDKVQAAITAALHTSAPLAGPVYAHITFTMPKPVRAPKRRRTYPAVTPDIDKL 175 Query: 75 QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG 108 +++ +DA+TKA W DD V++ K+ + Sbjct: 176 ERSTYDAITKAAAWKDDGCVIESHARKVYPDEHP 209 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 29/146 (19%) Query: 1 MNTYSITLPW-PPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGL-AMP 54 M +P P R RG R + + +Y +A + AM L P Sbjct: 1 MTIVRFEVPGTPVGKGRPKVSTRGGKFARMYTPEKTASYEGLIALSARQAMGGRPLIDGP 60 Query: 55 VKIRIEC--------------------HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 V + + +P + + D DN+ KA FD + W+DD Q Sbjct: 61 VDVSLMIRLAVPASWSKKKQAAALAGQVLPTK-KPDADNVLKAVFDGMNGV-VWVDDVQA 118 Query: 95 VDYRVVKMPVTKGGRLELTITEMGNE 120 + K + + + + +MG + Sbjct: 119 CGVMLRKRYA-QTPGVTVVVRQMGGD 143 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 26/141 (18%) Query: 2 NTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVK 56 +P P R R RT+ + Y + V + AM D A PV+ Sbjct: 16 RRVVFVVPGKPVAKGRPRFVRRGPHVRTYTPEPTERYENLVKMAAREAMRDSEPYAGPVR 75 Query: 57 IRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + ++ +P ++ D DN+ KA D + + DD QVVD Sbjct: 76 LIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALKDGMNGV-VYGDDGQVVDL 134 Query: 98 RVVKMPVTKGGRLELTITEMG 118 V K T + + E+ Sbjct: 135 WVSKRYAT-TPGVRIEAIELN 154 >UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RH80_ANAPD Length = 125 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Query: 28 SAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGF 87 S + Y + R I + P+ ++ + + R DL NL A D L+ G Sbjct: 32 SKRYKDYARDCGRQITGKYKK-NIDYPINLKCVYYRKTKHRVDLTNLLAATCDILSDCGV 90 Query: 88 WLDDAQ--VVDYRVVKM-PVTKGGRLELTITEMGN 119 DD VV + ++ + R+E+ I +M Sbjct: 91 IKDDNCKIVVSHDGSRVKYDKECPRVEIEIEKMNE 125 >UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV9_STAA0 Length = 197 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 17/130 (13%) Query: 5 SITLPWPPSNNRYYR------HNRGRTHVSAEGQAYRDNVARIIKNAML---------DI 49 ++LP P S N+ Y G+ +S G+ R+++ ++ M + Sbjct: 6 RLSLPLPTSLNKLYVQQFSGGRFTGKKILSKAGKENREDIMINVERQMSLPVNIDWDYEY 65 Query: 50 GLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK-GG 108 + + IE ++ R DLDN K D++ +G D+ + V R ++ + Sbjct: 66 TKDHYIYMDIEAYV-TRVNVDLDNTLKTLNDSIEASGLVFDNDKKVVPRFNRVYIEPSNP 124 Query: 109 RLELTITEMG 118 R+ELT T+ G Sbjct: 125 RVELTFTQTG 134 >UniRef50_Q4EJG1 Gp63 n=7 Tax=root RepID=Q4EJG1_LISMO Length = 134 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%) Query: 2 NTYSITLPWPPS-NNRYYRHNRGRTHVSAEGQAYRDNVAR-IIKNAM-LDIGLAMPVKIR 58 + I +P P + N Y RG +A+ + + +K AM + + P +I+ Sbjct: 11 TSNKIIIPLPLTDLNTYINKERGHRQAAAKVKKQMTYICASYVKMAMNHGVTFSTPCRIK 70 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKGG-RLEL 112 +P++R+ D DN+ K FD + +AGF +D + + + R+ + Sbjct: 71 FTWIIPNKRK-DPDNIAFAKKFIFDGMMQAGFIENDNLNFIEGFSDHFIIDKGEESRVIV 129 Query: 113 TIT 115 + Sbjct: 130 EVE 132 >UniRef50_C5B0R6 Putative uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=C5B0R6_METEA Length = 145 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 4/103 (3%) Query: 6 ITLPWPPSNNR-YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP 64 + LP P S N + G +S A+ + + +A ++ +P Sbjct: 27 LRLPVPVSVNDMHAPRKGGGVRISDAYAAWMSDAGWRLTAQRPG-RIAGRY--TLDLGLP 83 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 DLDN K D L G +D + T Sbjct: 84 RESGLDLDNAVKVTSDLLQLHGVIRNDRNAERIGIWWQDETPE 126 >UniRef50_Q5YSM1 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YSM1_NOCFA Length = 144 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 50/136 (36%), Gaps = 22/136 (16%) Query: 1 MNTYSITLPW---PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M I LPW P S N + +A+ + R+ V + A L L + Sbjct: 1 MTVVRIDLPWTSPPLSMNDRGYTHGAAMAKAAKTREIRETVIALATQAKLP-RLVAHAAV 59 Query: 58 RIECHMPDRRRRDLDNL---QKAAFDALT-----------KAGFWLDDA----QVVDYRV 99 ++ D RRRD DNL K DALT G LDD + + Sbjct: 60 QLHYQPRDNRRRDTDNLIATLKPIADALTVSRASKRGTVPGYGLVLDDTPQWMSKPEPLI 119 Query: 100 VKMPVTKGGRLELTIT 115 +GGR+ + IT Sbjct: 120 HPAVKGEGGRMWIEIT 135 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 30/138 (21%) Query: 12 PSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR 67 P + R R + + ++ +A K+ PV++R+ P + Sbjct: 17 PRPRAFARRVGNKFVARVFDAGTAEGWKSRIAVAAKSLTPAQPYTDPVRVRLHFFFPRPK 76 Query: 68 ----------------------RRDLDNLQKAAFDALTKA-GFWLDDAQVVDYRVVKMPV 104 + D DNL KA DA+T+ G+W DD QV V K V Sbjct: 77 AHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKAVLDAMTQLGGWWGDDQQVASLAVCKSYV 136 Query: 105 T---KGGRLELTITEMGN 119 + + +++++ Sbjct: 137 STIQLHPGVNISVSQCNQ 154 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 11/103 (10%) Query: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP----------DRRRRDLDNLQ 75 + + +A R + + + D PV++ ++ P + D DNLQ Sbjct: 35 YEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLMVKWCFPVTGKHKNGEYKTSKPDTDNLQ 94 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 K D +T FW DDA V V K G + + I E+ Sbjct: 95 KLLKDVMTDLRFWKDDALVASEIVEKFWAEVPG-IFIAIEELS 136 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 25/124 (20%) Query: 13 SNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR---- 66 S + T++ + ++ ++N M + L +KI +E + Sbjct: 21 SPRPRFSTKGRYAHTYMPTKYTEHKK----YLQNQMPKLNLENALKIELEFYFTPPKSWS 76 Query: 67 -------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + D+DNL K DA W DD Q+ + K + ++ + Sbjct: 77 KKKKTQAIGQLKVTKPDIDNLMKTVLDACNNY-LWKDDNQIAEITSSKRYGIE-PKIIIR 134 Query: 114 ITEM 117 I E+ Sbjct: 135 IEEI 138 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 18/120 (15%) Query: 16 RYYRHNRGRTHV--SAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP------DR- 66 YR + V S + + +RD V+++ + + V + + MP D+ Sbjct: 23 NAYRRGQKIVLVESSKKVKPWRDTVSQVARFVC-KRPIDGAVTVAVHFVMPRTKAMRDKP 81 Query: 67 -----RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE--LTITEMGN 119 ++ DLD + +A DALT + DD+Q+V K G + +TIT Sbjct: 82 APPMVQKPDLDKMLRAVNDALTGIA-YADDSQIVRLTGSKRRAAPGEKTGAHITITPFME 140 >UniRef50_Q88UN4 Prophage Lp2 protein 24 n=2 Tax=Lactobacillus plantarum RepID=Q88UN4_LACPL Length = 126 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 12 PSNNRYYRHNRGRTHVSAE-GQAYRDNVARIIK-NAMLDIGLAMPVKIRIECHMPDRRRR 69 PS N Y + R + +A + Y + + + + + P K++ + + R+ Sbjct: 11 PSLNEYIKAERANRYAAANLKKRYTALCSVYARASRNSGVEFSWPCKLKFTWYTKNNRK- 69 Query: 70 DLDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLEL-TITE 116 D DN+ K D KAG +D + + ++ + R+E+ ITE Sbjct: 70 DADNIAFAKKFVLDGFMKAGLLGNDNRKHITGFQDEFAVDKRNPRVEIDEITE 122 >UniRef50_Q6AC63 Phage-related protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AC63_LEIXX Length = 127 Score = 68.3 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 18/97 (18%) Query: 3 TYSITLPW---PPSNNR--YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 T SI +P P S N ++R T + +R+ A + Sbjct: 8 TASILIPLARDPLSLNLRLHWRTVAKHT------KIWREFAA----TQAARFPHLGCCTV 57 Query: 58 RIECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDD 91 + H+ DRRRRD DNL KA D L AG LDD Sbjct: 58 TLTWHVLDRRRRDADNLFRLCKALCDGLVDAGVTLDD 94 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 21/119 (17%) Query: 7 TLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIECHMP- 64 T+P + R GR A+ ++ +A + +AM L PV + IE +P Sbjct: 6 TIPGEVTGKGRPRIWNGRAVTPAKTRSKEGVIASLAMDAMGGCDPLTGPVLVTIEAVLPV 65 Query: 65 -----DRRR-------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 +RR DLDN+ K DA+ + DDAQ+ K Sbjct: 66 ATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVNGI-VFADDAQITHIIASKRYGV 123 >UniRef50_B3WDE7 Putative uncharacterized protein n=3 Tax=Lactobacillus casei group RepID=B3WDE7_LACCB Length = 121 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 13/119 (10%) Query: 5 SITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDN----VARIIKNAMLDIGLAMPVKIRI 59 I +P P + N+Y + RG A+ + R N + P+ Sbjct: 3 RIIIPLPLMTLNQYIKIERGNMFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLS--F 60 Query: 60 ECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELT 113 + + D+R D DN+ K FD + KA F +D +V+ R R+E+ Sbjct: 61 DWYWYDKRT-DPDNIAFQHKFIFDGMQKAEFLENDNWDHIVELRDRFFIDKANPRVEVE 118 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 68.3 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 25/124 (20%) Query: 13 SNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP------ 64 S +R+ +T++ ++ I+ M + L +KI ++ + P Sbjct: 17 SPRPRFRNTGRFVQTYMPTAYTNHK----AYIQGQMPKLNLERALKIELDFYFPLLKSWS 72 Query: 65 -----------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + D+DNL K DA W DD Q+ + K + ++ + Sbjct: 73 KKKKSEMVGQYKVTKPDIDNLIKTVLDACNG-HVWKDDNQITEITSSKRYGLE-PKIIMR 130 Query: 114 ITEM 117 + E+ Sbjct: 131 VEEV 134 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 16 RYYRHNRGRTHVSAEG-QAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNL 74 R G +A A PV++ E M R R DLDNL Sbjct: 4 GRPRVYNGHAMTPKRTVRAEERLFAEFRLKYPQAKPYQCPVRLEAEFWMSHRGRPDLDNL 63 Query: 75 QKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 K D+L ++DDAQVV+ K Sbjct: 64 LKLVLDSLNGVA-YVDDAQVVESHACKRMPD 93 >UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovirales RepID=A8HP85_9CAUD Length = 109 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 11/118 (9%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M +I P S N + +G+ + + + Y ++ ++I +K+ + Sbjct: 1 MIKLNIK---PLSINCAF---QGKRFKTKKYKQYEQECLLLLPR-KVEIP-EGKLKVSLF 52 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGR-LELTITEM 117 + D DN K D L K + +D ++ +Y + K+ V KG +E I + Sbjct: 53 FGFSSKLA-DADNPVKCFIDILQK-KYGFNDNKIYEYSISKVDVKKGEEFIEFKIESL 108 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 23/134 (17%) Query: 4 YSITLPWPP--SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 I + P + G T+ + Y + V + L V I Sbjct: 1 MKIVIDGKPMGKQRPRFNSKTGNTYTPDKTVNYENWVKLCYQQQCKGEKLTGEVVAFINA 60 Query: 62 HMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + + + D+DN+ K D+L + DD Q+V + K Sbjct: 61 YYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLNGLA-YKDDKQIVFCAISKW 119 Query: 103 PVTKGGRLELTITE 116 + R+E+ + E Sbjct: 120 YG-ENPRVEVILEE 132 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 33/147 (22%) Query: 3 TYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 T+P P + R +R + + A+R V +KN +K+ + Sbjct: 1 MVKFTIPIEPKPQKRPRFSRWSGAYEDKDMMAWRKQVTDYVKNNYEGPYFDDGLKVDVTF 60 Query: 62 HMPD------------------------------RRRRDLDNLQKAAFDALTKAG-FWLD 90 ++ ++ DLDNL+KA +D+++K+ W D Sbjct: 61 YLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLDNLEKAVYDSISKSEVVWTD 120 Query: 91 DAQVVDYRVVKMPVTKGGRLELTITEM 117 D +V++ K+ + R+E+ I E+ Sbjct: 121 DNIIVEHTTRKLY-SPNPRIEVKINEL 146 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 25/134 (18%) Query: 6 ITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 IT+P P R R T+ E + Y VARI K ++ + +P+++RI Sbjct: 3 ITIPGKPVGKARPRFRRAGFKVITYTPPENKKYEKEVARIYKQSIGVLYTDIPLRVRILA 62 Query: 62 HMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 P ++ DLDN+ K D L + DD QV + K+ Sbjct: 63 KFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLNGVA-YTDDKQVTSLEIEKV 121 Query: 103 PVTKGGRLELTITE 116 + + + I E Sbjct: 122 YSDE-PCVVVYIAE 134 >UniRef50_A5MC55 Putative uncharacterized protein n=2 Tax=Streptococcus RepID=A5MC55_STRPN Length = 137 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 48 DIGLAMPVKIRIECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 P K+++ + P R+ D N KA FD LT A W DD V M Sbjct: 50 PYREDKPCKVKVRIYPPTNRKYDPPNWSPTSKALFDGLTDAKIWTDDNYNVIVSTEFMHG 109 Query: 105 TKGG----RLELTITE 116 K G R+EL I E Sbjct: 110 GKSGNKNYRIELEIYE 125 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR----------RRDLDNLQ 75 + Y + +P+K+ + ++ R DLDNL Sbjct: 31 YDRRGTNNYSLKAQLMKNKPKECFEKNVPLKLSVTFFYAIKQKKRWWQWKTSRPDLDNLM 90 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 K D +TK ++ DD+Q+V K+ K R+E+ ITE+ Sbjct: 91 KNLQDYMTKLRYYSDDSQIVWLEAKKVNDEKN-RIEIEITEV 131 >UniRef50_Q9CIB4 Prophage pi1 protein 15 n=4 Tax=root RepID=Q9CIB4_LACLA Length = 158 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 8/112 (7%) Query: 16 RYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ 75 N + + + + + + P R + D N + Sbjct: 47 SRIAANNTKQRLRRIACRTAHEWLDQSEEVFEQFHEKHRCDVFVVIYPPKRFKYDPPNYE 106 Query: 76 ---KAAFDALTKAGFWLDDAQVVDYRVVKMP-----VTKGGRLELTITEMGN 119 KA D LT AG W DD V R TK ++EL + E+ Sbjct: 107 PTSKALIDGLTDAGIWNDDNYNVIRRTSFEHGGLSGDTKTWKVELVVKELTE 158 >UniRef50_C3PI76 Putative uncharacterized protein n=3 Tax=Corynebacterium RepID=C3PI76_CORA7 Length = 123 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 12/98 (12%) Query: 1 MNTYSITLPW----PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M T+P PP N H + ++ + I+ I A + Sbjct: 1 MQQMMFTIPLTFTKPPLNMNQRLHWAKKAKITKAIR-----TEAFIRCRAARIPRAKHLT 55 Query: 57 IRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDD 91 +++ D RRRD DNL KA D + AG DD Sbjct: 56 VQLHYQPRDNRRRDADNLVPTLKALCDGIVDAGVVPDD 93 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 27 VSAEGQAYRDNVARIIK-NAMLDIGLAMPVKIRIECHM-PDRRRRDLDNLQKAAFDALTK 84 V+ + + ++ + + P ++ IE P D+D + KA DALT Sbjct: 13 VTTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEVARDPASPDHDVDGVAKAVLDALTG 72 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 + DD+QV V ++ + R+ +T M Sbjct: 73 V-VFHDDSQVERLLVTRVEGDR-PRIAVTARPMQE 105 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 24/116 (20%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM------------------- 63 RT+ + ++Y + + + ++ + +K+ + C+ Sbjct: 28 KRTYTPNKTKSYEELIKWLYQSKVKHY-FEGYIKMTLRCYYSIAKSNSKKIKEQKRNNVL 86 Query: 64 -PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 P + + D+DN+ K D+L + DD Q+V+ K K R+E+ + ++ Sbjct: 87 RPSK-KPDIDNVIKVVADSLNGIA-YKDDTQIVEVVASKYYSDK-PRVEVILEDIS 139 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%) Query: 18 YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM-------------P 64 ++ + + A PV +RI+ P Sbjct: 29 WKLKGCHVYTPQATIDEER----ALGQAYKGPRHEGPVSVRIDVFRVLPGSRPKRVLGEP 84 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK--GGRLELTITEMG 118 D D+DN+ KA D L + DD QVV+ V K + G + +++ + Sbjct: 85 DTMTPDIDNIAKAVLDGLNGIA-YDDDKQVVELHVYKHDRERRVGDSVRISVEGVT 139 >UniRef50_UPI00004C2387 hypothetical protein SpyoM01000040 n=1 Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2387 Length = 132 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 8/95 (8%) Query: 31 GQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ---KAAFDALTKAGF 87 + R P K+ + P +RR D N+ KA D T AG Sbjct: 32 TKGLRQLAKLKSNGLTKKHTKNNPCKVIVTVFTPTKRRFDPPNIYPTIKAILDGFTDAGV 91 Query: 88 WLDDAQ--VVDYRVVKM---PVTKGGRLELTITEM 117 W DD + V R+ + I EM Sbjct: 92 WDDDNHEIIKSLTFRYGGLSNVKGKYRIAIEILEM 126 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 24/140 (17%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M+TY+ + P R +R + + A+ + Y+ V I + ++ Sbjct: 1 MSTYTAVVLGDPVAQGRPRFSRQGGFVKAYDPAKSRDYKSYVRMIAAQHAPVTPVEGAIE 60 Query: 57 IRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + + + + D+ N+ K DAL ++ DD+Q+V Y Sbjct: 61 FSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKGV-WYKDDSQIVGY 119 Query: 98 RVVKMPVTKGGRLELTITEM 117 V+ + R+E+ + E+ Sbjct: 120 GVLGKWYDERPRIEIMMREL 139 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 28/139 (20%) Query: 4 YSITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGL-AMPVKIR 58 S +P P R + R + +Y +A AM L V + Sbjct: 7 VSFLVPGEPVGKGRPRIGKVGNHARMFTPQKTASYEGLIALAGTEAMAGRTLLEGAVMVE 66 Query: 59 IECH--------------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + P + + D+DN+ KA +D L W DD QVVD Sbjct: 67 MRIVLAIPQSMSKKRKAMAIAGELFPTK-KPDMDNVIKAIYDGLNGV-VWKDDVQVVDAF 124 Query: 99 VVKMPVTKGGRLELTITEM 117 V K G + + I + Sbjct: 125 VRKRYGEVPG-VHVRIVPL 142 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 44/148 (29%), Gaps = 30/148 (20%) Query: 1 MNT-YSITLPWPPSNNRYYRHNR-----GRTHVSAEG----QAYRDNVARIIKNAMLDIG 50 MN S +P P+ R R + + +R V Sbjct: 1 MNQRLSFFIPGVPAPGGSKRFVGIGKKTKRAILVDAAGQKNKDWRTAVGWAAHEHFKGEV 60 Query: 51 LAMPVKIRIECHMPDRR------------------RRDLDNLQKAAFDALTKAGFWLDDA 92 L +++ MP + R D L ++ DALT W DDA Sbjct: 61 LTGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDALTGI-VWRDDA 119 Query: 93 QVVDYRVVKMPVTK-GGRLELTITEMGN 119 QVVD K + I E+ + Sbjct: 120 QVVDGGQKKRYADSCSAGCLVEIEELAS 147 >UniRef50_C7Q4H8 Endodeoxyribonuclease RusA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4H8_CATAD Length = 132 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%) Query: 19 RHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNL---Q 75 H R R ++ +A R+ A+ ++A I ++I+ H D+RRRD N Sbjct: 30 VHWRTRARIT---KALREAAAKSARDA--HIPPMEQIRIQAVLHPHDKRRRDPHNWYPSY 84 Query: 76 KAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLELTITEMGNE 120 KAA D + AG DD ++ VV + ++ L IT G E Sbjct: 85 KAAIDGIVDAGVIPDDDGKHLISIEVVLGAPVRHTQIALRITPFGVE 131 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 21/120 (17%) Query: 17 YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD----------- 65 R RG + Y V + L +K+ I + Sbjct: 14 RPRVCRGHAFTPKDTVQYEKLVRDCYQEQ-DGRYLEGSIKVLIVAYYKIPKSYSKKRVQA 72 Query: 66 --------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 R++ D DN+ K D+L + DDA V D+RV+K + R+E ++E+ Sbjct: 73 IRDGLEKPRKKPDADNIGKIILDSLNGIA-YKDDAYVADFRVIKEYTEELERVEFELSEV 131 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 45/158 (28%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARII----KNAMLDIGLA 52 +N +P P + R R RT+ A+ Y D V K + + Sbjct: 3 VNCIKFVIPGEPQSKERPRTVRRAGGVRTYTPAKTHRYEDIVRYFAVYARKEHKISEPIN 62 Query: 53 MPVKIRIECHM--------------------PDRRRRDLDNLQKAAFDALT--------- 83 + I+ + P + + D DN+ K FD + Sbjct: 63 SQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTK-KPDSDNIAKIIFDGMNPKMKLNKAL 121 Query: 84 ------KAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + GF+ DD +V + V K +E+T+T Sbjct: 122 HKKMVLQDGFYEDDKLIVTHSVEKWYSM-HPHVEVTVT 158 >UniRef50_C7R1F1 Endodeoxyribonuclease RusA n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1F1_JONDD Length = 131 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 20/104 (19%) Query: 25 THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ---KAAFDA 81 + + +A R + ++ + P ++ DRRRRD N KA D Sbjct: 22 HVKAKKTKALRQ----LAESESRGLRGPTPCRVIAWLGFQDRRRRDAPNWWPTIKALIDG 77 Query: 82 LTKAGFWLDDA---------QVVDYRVVKMPVTKGGRLELTITE 116 + AG W DD +++DYR K V + + I Sbjct: 78 MVDAGVWEDDNSTIIQGPDHRILDYRCQKGHV----YVSIEIGP 117 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 10/109 (9%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC-H 62 + PP +T + ++ V + + A I ++ + Sbjct: 5 LEFIVDGPP--------VSQQTRRRERLRDWKRVVRQEAEKYWSSGQKATTGLIMLQITY 56 Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 D D+DN+ K DA+ ++DD QV D V K ++ ++E Sbjct: 57 FYDSVAIDVDNIVKPIQDAIIGL-VYIDDDQVTDVLVRKRDLSGNFKVE 104 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 11/106 (10%) Query: 20 HNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIEC--------HMPDRRRRD 70 R T+ E A+ V AM +A+ + I D D Sbjct: 104 RIRHHTYTPKETAAFESAVRMAGAAAMRGREPIAVSLGIDAILAFDGDAGLWPTDNTDGD 163 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 LDNL KA DA+ + DD VV+ R+ K+ + L + Sbjct: 164 LDNLVKAVLDAVNGV-VFKDDRLVVEMRLAKIC-LPSPAIALRVRP 207 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%) Query: 27 VSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIEC-HMPDRRRRDLDNLQKAAFDALTK 84 ++ + + Y+ + + + I H+ D DLDNL KA D+L Sbjct: 26 LTTQTKYYKTLLKEFFRKDFPRLRPGYGDYSVHIVMEHLGDAPWMDLDNLAKALLDSLCG 85 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGG 108 + DD QV V + + G Sbjct: 86 -NVFEDDHQVARLLVERRAAERDG 108 >UniRef50_Q9AZ79 RUS n=6 Tax=root RepID=Q9AZ79_9CAUD Length = 139 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%) Query: 55 VKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP----VTKG 107 + + P +RR D DNL KA D T++G W DD V TK Sbjct: 70 CSVTLTVFTPTKRRSDPDNLQPTLKAIMDGFTESGLWSDDNHEVVKFTKYQYGGLSGTKT 129 Query: 108 GRLELTITEM 117 RLE+ I E+ Sbjct: 130 YRLEVDIEEV 139 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIE 60 TY +P P R R + + V L V + + Sbjct: 4 MTYDFDIPGEPVAKGRPRFYGYRAVTPQHTRDAEELVRNQFHMFYPHAEPLDGDVMMILM 63 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + + DLDNL+K DAL ++DD QV Sbjct: 64 FYKGRHGKPDLDNLEKLVKDALNGLA-YVDDQQVK 97 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 21/118 (17%) Query: 17 YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR--------- 67 R RG + Y V K L +K I + + Sbjct: 13 RPRVCRGHAFTPKDTIEYEKLVRECYKKQ-DGRYLEGAIKALIIAYYKIPKSYTKKRVQV 71 Query: 68 ----------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + D DN+ K D+L + DD+Q++D R+ K + R+E Sbjct: 72 IRDGLEKPTKKPDADNIGKVILDSLNGVA-YKDDSQIIDLRIKKEYTEELERVEFEFR 128 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 20/113 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC- 61 Y +T+P R GRT A+ ++ R + L P+ + + Sbjct: 39 VYRLTIPGLLRAKGRPRFGNGRTFTYAKTVQAEKHIQRHAIEQIGKPCLTGPLHVSLMIN 98 Query: 62 --HMPDR----------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 P R D+DN K A DAL W DDAQ+VD Sbjct: 99 IAPPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNGIA-WKDDAQIVD 150 >UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3P4_ACIBC Length = 229 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 17/108 (15%) Query: 4 YSITLPWPPSNNRYYRHN-----RGRTHVSAEGQAYRDNVARI---IKNAMLDIGLAMPV 55 +I LP+ S N +R + R +S + Y+D V + + A+ + Sbjct: 78 ITIKLPYGLSANEIWRATIDQNGKQRNSLSVGAKKYKDKVQKQYGPMFRALKLKAIDQLC 137 Query: 56 KIRIECHMPDRRRR---------DLDNLQKAAFDALTKAGFWLDDAQV 94 +IR+ P + R D+DN K D++ G D + Sbjct: 138 EIRLIVQPPLKTRSYSAKTYPRFDIDNYPKLLIDSVKGDGLLFKDDNI 185 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 19/117 (16%) Query: 16 RYYRHNRGRTHVSAEGQAYRDNVARIIKN--AMLDIGLAMPVKIRI-------------E 60 R GRT+ + + + PV + I Sbjct: 25 RPRFTRSGRTYTPRKTKRAELAIRDEFLRVSGDRWAKFRGPVSVHIIYGRELAKSNPKFW 84 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG---RLELTI 114 D + DLDN K DAL F +DD+QVV+ + K GG L++ I Sbjct: 85 AGRADTGKPDLDNCGKLVLDALNGIAF-MDDSQVVNMTIAKSARRPGGTGNLLQIEI 140 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 58.3 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%) Query: 27 VSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIECHM-PDRRRRDLDNLQKAAFDALTK 84 ++ + + Y+ + + + I D DLDNL KA DA+ Sbjct: 31 LTTQAKYYKPLIYEFFRKVWRGSRPAWGEFSVEIGMEFVGDPPWMDLDNLAKALLDAIKG 90 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 F DDAQV V + P + R+ + + ++ Sbjct: 91 YAF-HDDAQVARLLVERRPAERE-RIIIVVRKL 121 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 15/96 (15%) Query: 28 SAEGQAYRDNVARIIKNAMLD---IGLAMPVKIRIECHM------PDRRR------RDLD 72 SA+ + +RD V+ I A+L L V I M P RRR D+D Sbjct: 56 SAKVKPWRDKVSAAITAAILRGDAKPLHGAVYAEITFTMAKPGSRPKRRRTYPAVSPDID 115 Query: 73 NLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG 108 L++A +DA+T A W DD +V++ K+ + Sbjct: 116 KLERATYDAITTAKAWEDDGRVIENHNRKVYPGEHP 151 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 1 MNTYSITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI--GLAMPVKI 57 M + + PP S R+ Q ++ V + +K+ Sbjct: 1 MIPFEFIVEGPPVSLQTKNRN---------RLQEWKARVRSAAELYWPTEDSPSDKQLKL 51 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 I + + D+DN+ K DAL + DD Q++D K + ++ Sbjct: 52 SITYYYEN-TSPDVDNIIKPIQDALVGL-VYNDDDQIIDTSCGKRDINGSFKIR 103 >UniRef50_C0W5T7 Gp53 family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5T7_9ACTO Length = 130 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 18 YRHNRGRTHVSAEGQAY---RDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNL 74 + GR H + R + ++ L A V++ H R R D N Sbjct: 15 WLSANGREHRFGRARRTATLRKRAYLMARHHGLP-RYAGRVRVDFYVHTRTRNRMDPANA 73 Query: 75 ---QKAAFDALTKAGFWLDDA 92 KA D LT AG W DD Sbjct: 74 YPTVKALVDGLTDAGVWADDD 94 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 55.6 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 27/145 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDI--GLAMP 54 M T+P P + + +R +T+ E +Y + V A Sbjct: 5 MKQIRFTIPGQPFGKQRPKFSRAGAYVKTYTPKETTSYENLVKLFYNEAAKGKMFPEGAM 64 Query: 55 VKIRIECHM-------PDRRR------------RDLDNLQKAAFDALTKAGFWLDDAQVV 95 + +RI + +RR D DN+ K D+L + DD+ VV Sbjct: 65 LDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIVCDSLNLVA-YHDDSAVV 123 Query: 96 DYRVVKMPVTKGGRLELTITEMGNE 120 D +V K ++ R+++ I +G + Sbjct: 124 DAQVRKFY-SETPRIDVMIKVVGPD 147 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 38/150 (25%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIG-LAMPVKIRIE 60 + T+ PP R R T+ A+ Y D V N+ I P+ ++I Sbjct: 1 MRVNFTIEGPPIGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKGIFDKDEPLDVKIM 60 Query: 61 CHM--------------------PDRRRRDLDNLQKAAFDALT---------------KA 85 + P + + D DN+ K D + Sbjct: 61 AYFEVPKSLSKKRKALCLANQELPTK-KPDADNVGKIIMDGMNPKMRRDKRLHKMVEVMR 119 Query: 86 GFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 G + DD QV V K + R+++ I Sbjct: 120 GVYHDDKQVTTLLVKKRYAER-ARVDVRIK 148 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 24/123 (19%) Query: 12 PSNNRYYRHNRG-RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM------- 63 P + R + G T++ A ++ VA + + + + P+++ +E + Sbjct: 20 PKGSSRPRFSGGGHTYMPAPYVKHKKFVA----DQLPHLMIDKPIRLTVEFYFKPSKSWP 75 Query: 64 ----------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 P + D+DNL K DA W+DD + + R K + R LT Sbjct: 76 KYKKEACIGNPHTIKPDIDNLLKTILDAGNNL-LWVDDTLIYEIRTFKKYA-ETARTVLT 133 Query: 114 ITE 116 I E Sbjct: 134 IIE 136 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 29/143 (20%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG------RTHVSAEGQAYRDNVARIIKNAMLDIGLA-- 52 M + + +P P + R ++ + Y + + +N L Sbjct: 12 MQSVTFQVPGKPQGKARAKTVRNKSTGNIHSYTPEKDMLYENYIKAQFQNRANGFYLERG 71 Query: 53 MPVKIRI--ECHMPDR-----------------RRRDLDNLQKAAFDALTKAGFWLDDAQ 93 PV +RI P ++ D+DN+ K DAL + DD Q Sbjct: 72 KPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIVKVVADALNGVA-YHDDTQ 130 Query: 94 VVDYRVVKMPVTKGGRLELTITE 116 + K G L++T+ E Sbjct: 131 IAMVIAAKTYSAMEG-LDITVEE 152 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 23/105 (21%) Query: 25 THVSAEGQAYRDNVARIIKNAMLD---------IGLAMPVKIRIECHMPDRR-------- 67 + E + +AM + +PV +RI+ + P + Sbjct: 1 MYTPDETIRNEAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVS 60 Query: 68 -----RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 + D DN+ K D + W DD+QV + VVK P +G Sbjct: 61 EPNTFKPDADNIAKLVMDGMNGV-VWGDDSQVAEVHVVKWPRRRG 104 >UniRef50_B5GC73 Predicted protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GC73_9ACTO Length = 214 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 13/130 (10%) Query: 2 NTYSITLP--WPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKN------AMLDIGLAM 53 Y ITLP P N+ H+ + ++ + + + A L Sbjct: 70 TRYVITLPAGLPLLNSNQRTHHHDKRRLTKRLREAATEAVQECPSLLDALAAARPGPLFE 129 Query: 54 PVKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGG 108 + RRR D N KA D L AG DD ++V + KG Sbjct: 130 RAHVLGILRPATRRRADPANWYPSFKAVIDGLVDAGLLDDDDHTRLVGPDMRLGTPVKGA 189 Query: 109 RLELTITEMG 118 +L L I + Sbjct: 190 QLVLIIRGLA 199 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%) Query: 34 YRDNVARIIKNAMLDIGLAMPVKI--RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDD 91 ++ + + + + A +I + D+DN+ K DAL + DD Sbjct: 29 WKSKIVDASREVIPEGHFATEARIAATLFYFPATEMAGDIDNIVKPILDAL-GRHIYRDD 87 Query: 92 AQVVDYRVVKMPV 104 QV V K Sbjct: 88 KQVYRLVVQKFEP 100 >UniRef50_Q854T6 Gp64 n=2 Tax=unclassified Siphoviridae RepID=Q854T6_9CAUD Length = 127 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 12/96 (12%) Query: 2 NTYSITLPW--PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 + I LPW PP R H +A+ + R+ V D + + Sbjct: 6 KYFRIDLPWSRPP------LTANQRMHWAAKARKTRE-VRTAAALLARDAPRTDRLVATL 58 Query: 60 ECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDA 92 +RRRD NL KA D L AG DD Sbjct: 59 HYQPRQQRRRDNHNLWPTVKALVDGLVDAGVVPDDD 94 >UniRef50_B1MZE0 dTDP-glucose pyrophosphorylase n=2 Tax=Leuconostoc RepID=B1MZE0_LEUCK Length = 149 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 17/122 (13%) Query: 13 SNNRYYRHNRGRTHVSAEGQ----AYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRR 68 + N+Y R ++A+ + AY NV + P K++ + ++PD RR Sbjct: 30 TLNKYIEAERKNRFIAAKLKKTATAYARNVFLQAITDNVSFSW--PTKLKFDWYLPD-RR 86 Query: 69 RDLDNL---QKAAFDALTKAGF-----WLDDA--QVVDYRVVKMPVTKGGRLELTITEMG 118 D DN QK FD + KA +D + + RLE+ E+ Sbjct: 87 IDPDNWTFTQKFIFDGMQKANIGKRVFLDNDNVKNIKGFDHDFYVDKVNPRLEIYEMEVV 146 Query: 119 NE 120 +E Sbjct: 147 HE 148 >UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYJ0_9GAMM Length = 80 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 R DL N +KAA DAL F DD Q+V + + G + + T Sbjct: 26 RCIDLANAEKAAVDALQGVAF-EDDKQIVRMVLERGQPVPEGAVFVEWTPF 75 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 31/147 (21%) Query: 2 NTYSITLPWPPSNNRYYR----HNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGL-A 52 T I LP P +R H G +H + +AY + M L Sbjct: 3 ETLIIRLPGAPRGKGRHRAQLVHRGGVARIHSHPDQKTEAYESALRLAAGAVMRGRALLT 62 Query: 53 MPVKIRIECHMP-----DRRRR--------------DLDNLQKAAFDALTKAGFWLDDAQ 93 P+++RI MP +R+R D DN+ K DAL W DDA Sbjct: 63 GPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSDALNHV-VWADDAS 120 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 VVD V K + L + +T + + Sbjct: 121 VVDGLVRKFYG-ETPELVIQVTALEPQ 146 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT--KGGRLELTI 114 P +R DLD L +A D LT W+DD+QVVD K+ + + I Sbjct: 132 PPAVKRPDLDKLARAILDGLTDV-VWIDDSQVVDLHCRKVLAELTQPPGAHIRI 184 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 50.6 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 21/117 (17%) Query: 21 NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFD 80 R + S + + + + + I + + + PV++ ++ R DLD + D Sbjct: 35 TRPMSIKSDKARNFERDALKQIPPSAR-VRMTGPVRVILKIFYATER-PDLD--ESVILD 90 Query: 81 ALTK-----------------AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 + G + +D QV V R E+ I + + Sbjct: 91 VMQDRFRTVTVKGIERRELVYHGVYRNDRQVRQKFVFHGIDRVNPRAEVVIESLQEQ 147 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 38 VARIIKNAMLDIGLAMPVKIRIEC--HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 L +PV + + H P DLDN K+ D+L WLDD QV Sbjct: 17 FCVTAAEEEEVEPLCLPVSLVLSFATHPP----GDLDNYIKSLADSLNGIA-WLDDRQVA 71 Query: 96 DYRVVKMPVTKG-GRLELTITE 116 V K+ V +G R E+ + Sbjct: 72 RMEVEKVVVVEGDERAEVEVAP 93 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 32/133 (24%) Query: 19 RHNRGRTHVSAEG-QAYRDNVARIIKNAMLDIGLAMPVK--IRIECHMPDRR-------- 67 R+ G + S+ + +R+ V +A+ + + ++ RR Sbjct: 22 RNRAGALYESSAAVKPWREAVKTAALDALHHDDGWTALSCPVWLDAQFTLRRPKHHYGTG 81 Query: 68 ----------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV-----TK 106 DLD L + DAL AG DD+ V K+ V + Sbjct: 82 RNAGRLKPSAPAYPTGTPDLDKLVRCTQDALKDAGVLADDSVVASLSASKVYVLWGDALR 141 Query: 107 GGRLELTITEMGN 119 + + + + Sbjct: 142 TPGAVIRVWRLND 154 >UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence n=1 Tax=Bacillus phage SPP1 RepID=Q38073_BPSPP Length = 62 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 59 IECHMPDRRR-RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +E ++PD + RD N +K DAL +D ++D + V + R+E+ I+++ Sbjct: 1 MEFYLPDDGKVRDTHNAKKLLLDALEGV-IHENDMWMIDRTIDFHFVKENPRIEIEISKL 59 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 49.5 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 30/132 (22%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH--- 62 I +P P + + R + + + + ++ + +++ + + Sbjct: 25 IPMPRPRLGRGIWFNPATR-----QLKEFSKKLQALLPEDGVVFPRGECLEVNLFFYIRR 79 Query: 63 --------------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + + D+DNL K DA+ + DD+QVV V K+ Sbjct: 80 PNSDYDGNKRINALKPGRANPFETVKPDIDNLAKFTLDAMQGI-VFHDDSQVVKLLVYKL 138 Query: 103 PVTKGG-RLELT 113 +GG R+++ Sbjct: 139 RGNEGGTRIKVR 150 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 18/99 (18%) Query: 35 RDNVARIIKNAMLDIGLAMPVKIRIEC----------------HMPDRRRRDLDNLQKAA 78 ++ LA V+ + P + D DN K Sbjct: 45 ERAYCTLLVTHRPPQPLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLF 104 Query: 79 FDALTKAGFWL-DDAQVVDYRVVKMPVTKGGRLELTITE 116 D L GF+ DDAQ+ D R++K + G + + ++E Sbjct: 105 CDCLKTVGFFQRDDAQIFDGRLIKGHGDRPG-IRVRLSE 142 >UniRef50_A1B8H5 Putative uncharacterized protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B8H5_PARDP Length = 122 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 10/122 (8%) Query: 2 NTYSITLPW----PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 + LPW S N H R R + + D +AR I +++ Sbjct: 1 MILRVKLPWAKTSELSANSRL-HWRKRAKLVKAQRRVTDALAREAGWHKARIPADAELRM 59 Query: 58 RIECHMPDR-RRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + P D DN+ K A DAL A +DD ++ ++ + G + + Sbjct: 60 TLIYCPPSTVTTVDDDNVVTENKGARDALA-AVLRIDDGRIKLQAPIRGDRCRDGAVIVE 118 Query: 114 IT 115 + Sbjct: 119 VE 120 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG---GRLELTITEMGNE 120 R D+DNL K D+L ++DD QVV +K+ ++G G ++ IT + +E Sbjct: 184 HNSRTDIDNLTKFVMDSLNGL-LYVDDKQVVSLSAIKLLDSEGLCEGATDVKITVVKDE 241 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG---GRLELTITEMGNE 120 R D+DNL K D+ + DD QV+ V K+ +G G ++ + + ++ Sbjct: 316 SPTRTDVDNLAKFVLDSCNGL-LYEDDRQVISLHVTKVLDEQGTCLGSTQVDLRAVRDD 373 >UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PFN4_XANAC Length = 305 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 9/79 (11%) Query: 32 QAYRDNVARIIKNAMLDIGL--AMPVKIRIECHMPDRRR------RDLDNLQKAAFDALT 83 ++ RD + I+ ++ D A V + + ++ +R D+DN+ K DALT Sbjct: 43 KSARDELCSNIRRSLQDFNWICAGQVNLELLWYLHATQRQETDKIGDIDNITKPIIDALT 102 Query: 84 KA-GFWLDDAQVVDYRVVK 101 G +DD+Q+ Sbjct: 103 GEKGLLIDDSQIGSMHSFW 121 >UniRef50_UPI0001BC49BC hypothetical protein F3_00332 n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC49BC Length = 134 Score = 47.9 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 38 VARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDD--AQVV 95 + + G P K+ RR+ D N + D + KAG+ DD +++ Sbjct: 54 AGNVAEFHRRIKGKEKPYKVGFYFIRDSRRKFDYINAMQLPCDLMVKAGWIDDDNANEII 113 Query: 96 DYRVVKMPVTKGGRLELTITE 116 + + + + + E Sbjct: 114 PVCLGYEVDKRNAGVRIEVLE 134 >UniRef50_C3PIE5 Putative uncharacterized protein n=1 Tax=Corynebacterium aurimucosum ATCC 700975 RepID=C3PIE5_CORA7 Length = 158 Score = 47.9 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 5 SITLPW---PPSNNRYYRHNRGRTH-VSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 +I LPW P S N +RG +A+ + + V + +N + G+ + +++ Sbjct: 18 TIELPWEKPPLSLNDSAPASRGAVWGRAAKKREIQQAVHLLARNVRMPEGMHY-LIVQLH 76 Query: 61 CHMPDRRRRDLDNLQ---KAAFDALT-------KAGFWLDD 91 D R RD DN+ K +DAL+ G DD Sbjct: 77 YRPRDNRGRDTDNVAASGKPIYDALSRGSKQIPGLGLVPDD 117 >UniRef50_B1BBK8 Putative uncharacterized protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BBK8_CLOBO Length = 132 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD 65 P PS N R + +++ ++ + +I ++ + + Sbjct: 20 FKTPIHPSIN---VWAINRMTMRNMKSKWKEFGLWLVNKLGYENLHIEKFQITMKNYYGN 76 Query: 66 RRRRDLDN-LQKAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLELTI 114 RRRRD DN K D L ++G +DD + ++ R+E+ + Sbjct: 77 RRRRDNDNQSPKFLLDPLVESGMLVDDDYKHLNPLIIMGDYDKGNPRMEIIV 128 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 25/119 (21%) Query: 13 SNNRYYRHNRGRTHV--------SAEGQAYRDNVARIIKNAMLDIG---LAMPVKIRIEC 61 S N Y N+ V S + +R +V + AM + G + + + Sbjct: 16 SKNSYTIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAMQERGQQICDDAIYLHCDF 75 Query: 62 H-------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 P ++ DLD L +A DAL + +D+++V+ R K G Sbjct: 76 VMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGT-VYTEDSRIVEIRATKRIAEIG 133 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 27 VSAEGQAYRDNVARIIKNAM---LDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALT 83 V+ + +A + V+ ++ + +I R D+DN+ KA D+L+ Sbjct: 24 VTTQTRALKKIVSAHMRRQVAFVRPAFGPFEARIWTSVLAETRGHHDVDNIAKAVLDSLS 83 Query: 84 KAGFWLDDA 92 W DD Sbjct: 84 G-HIWRDDR 91 >UniRef50_A7H208 Crossover junction endodeoxyribonuclease RusA superfamily n=4 Tax=Campylobacter jejuni RepID=A7H208_CAMJD Length = 129 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 19/117 (16%) Query: 9 PWPPSNNRYYRHNRGRTHVSA---EGQAYRDNVARIIKNA-----MLDIGLAMPVKIRIE 60 P P Y R + VS + ++ + I +E Sbjct: 18 PIP-----YKRTTQRAKFVSKDYLKYLEFKKLLQMEFLRQNKVQCFKAFDEKKFYSIELE 72 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +++ D DN+ K DAL + +D V+ K L++ I+E Sbjct: 73 IGFKNKKHGDCDNILKGVLDAL-----FKNDKNVIKGEYELKSFEKSF-LKVKISEF 123 >UniRef50_A7A5C0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5C0_BIFAD Length = 130 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 38/117 (32%), Gaps = 19/117 (16%) Query: 17 YYRHNRGRTHVSAEGQAY---RDNVAR----IIKNAMLDIGLAMPVKIRIECHMPDRRRR 69 Y+ R A+ + + +I + L PV + H R Sbjct: 13 YWWTQNKRGDWRAKYRRTSVVKRCAYLTYRSLINSGKLKPPAKWPVHVTAIIHPLTHGRF 72 Query: 70 DLDN---LQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE-------LTITE 116 D +N + KA DA+T+A FW DD Y V E + I E Sbjct: 73 DPENAAPMVKAILDAITQADFWPDDN--ARYVVGPDYRLGEPSTEKGVYHITIRIEE 127 >UniRef50_B2A5E1 Putative uncharacterized protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5E1_NATTJ Length = 181 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 7/97 (7%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLA--MPVKIRIECHMPDRRRRDLDNLQ-KAAF 79 + + + RD IIK A+ L P + I ++ D+ N K Sbjct: 71 NGNFTNRQHKEVRDYWYSIIKRALAGQNLDPIKPAIVYIRYYLDKNC--DVGNFLSKFIQ 128 Query: 80 DALTKAGFWLDD--AQVVDYRVVKMPVTKGGRLELTI 114 D L G DD V K+ K R E+ + Sbjct: 129 DGLVYNGVLEDDDLNNVTLLSEAKLKKEKAPRTEIYV 165 >UniRef50_B1I2Y2 Putative uncharacterized protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2Y2_DESAP Length = 191 Score = 42.9 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 44 NAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ-KAAFDALTKAGFWLDDA-QVVDYRVVK 101 + +D + H D R D+DN K + L AG DD+ Q + V+ Sbjct: 99 SQGVDPRFERALACVTVFHRLD-TRWDIDNRAIKYLVNGLACAGVVSDDSWQNLAVLVIG 157 Query: 102 MPVTKGGRLELTITE 116 K R E+ + Sbjct: 158 KYDKKHPRTEIVVCP 172 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 42.5 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 + D+DN+ K DAL +LD+ Q++ V K G E Sbjct: 56 TNNKPDIDNIMKITADALNGLA-YLDNKQIISCTVGKYYSNVQGASE 101 >UniRef50_B1I7E1 RUS n=5 Tax=root RepID=B1I7E1_STRPI Length = 52 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 75 QKAAFDALTKAGFWLDDAQVVDYRVVKMPV-----TKGGRLELTITEM 117 KA D +T AG W DD V ++ + RLE I E+ Sbjct: 5 VKAIIDGMTDAGIWTDDNHKVIKKLSFVYGGLSEEKGHYRLEFDIEEV 52 >UniRef50_C5RA86 Possible dTDP-glucose pyrophosphorylase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RA86_WEIPA Length = 145 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 14/108 (12%) Query: 21 NRGRTHVSAEGQAYRDNVARIIKNAMLD--IGLAMPVKIRIECHMPDRRRRDLDNLQ--- 75 GR + + + ++ AM+D + K + + ++PDRR DLDN Sbjct: 38 RAGRMIANKRKHQIQAKIMPLVDQAMVDGLAPIGAKTKFKFDWYLPDRRT-DLDNWTFTH 96 Query: 76 KAAFDALT-----KAGFWLDDAQ---VVDYRVVKMPVTKGGRLELTIT 115 K FDA F +D V Y + R+E+ Sbjct: 97 KFIFDAFQASSVRGQVFMPNDNLNFVVATYDDFRGIDKDNPRVEINWE 144 >UniRef50_Q8R8F6 Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8F6_THETN Length = 182 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 3/89 (3%) Query: 27 VSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNL-QKAAFDALTKA 85 + E + + +NV +KN I + + ++ + P D+DN K D + + Sbjct: 79 KNEEKERWINNVMFALKNVKDKISFD-RIFVFVKFYFPVS-NVDVDNRDIKPIIDGIKYS 136 Query: 86 GFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 DD + R E+ I Sbjct: 137 RIVADDNYRYVSYGFNANFSDSPRTEIYI 165 >UniRef50_Q7P5T9 Putative uncharacterized protein FNV0869 n=2 Tax=Fusobacteriaceae RepID=Q7P5T9_FUSNV Length = 129 Score = 41.4 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 21/64 (32%) Query: 52 AMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 P K+ + +R+ D N + FD + + DD V K R Sbjct: 64 EKPYKVELYFIRGSKRKFDYINAAQIVFDLMQHYDYIEDDDSQNIIPVFKGFEVDKFRAG 123 Query: 112 LTIT 115 + I Sbjct: 124 VEIR 127 >UniRef50_Q8ZS47 All7665 protein n=2 Tax=Nostocaceae RepID=Q8ZS47_ANASP Length = 148 Score = 41.4 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 7/89 (7%) Query: 8 LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR 67 +P PP N R SAE + Y +I + D + + IE H + Sbjct: 1 MPLPPCMNEIINQARSSWQASAELKKY---WTNLIGEFVRDCEFCLDSTVWIEFHWYLKN 57 Query: 68 -RRDLDNL---QKAAFDALTKAGFWLDDA 92 RD DN+ K D L +D Sbjct: 58 FARDSDNVAAAAKFIMDGLVTGRAIRNDN 86 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 64 PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 P + D+ N+ K D L + DD ++D + K K + E+ + Sbjct: 8 PHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA-KTYGIFFKAEEIRRD 63 >UniRef50_A7H0V1 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0V1_CAMC5 Length = 143 Score = 40.6 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 29/128 (22%) Query: 9 PWPPSNNRYYRHNRGRTHVS--AEGQAYRDNVARIIKNAMLDIG---------------L 51 P P Y R + + ++ +A A + L Sbjct: 16 PVP-----YKRTTQKMKFTKDYKKYLEWKTLLADAFCAANPNAPKRIIRRGKDWHAVPEL 70 Query: 52 AMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 + D+ D DN+ K DAL + +D G ++ Sbjct: 71 CGAYFVETIAIYKDKTHGDTDNVAKGVLDAL-----FKNDKYASGSYS--YEYAGKGGIK 123 Query: 112 LTITEMGN 119 + I E+G Sbjct: 124 VKIYEVGE 131 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 39.8 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 30/131 (22%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M TY IT P R R + + + + + + Sbjct: 1 MRTYDIT-PL-----GKPRMTRADKWKTRPAVMRYRAFCDEARLRRIHLPESGA-HVTFV 53 Query: 61 CHMPDR---------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 MP + D DN+ KA DAL + DD+ V D R+ K+ Sbjct: 54 MPMPTSWSKKKREQFDGKPHQSKPDCDNMLKALMDAL-----FDDDSSVWDCRITKLWGE 108 Query: 106 KGGRLELTITE 116 KG ++ I E Sbjct: 109 KG---QIIIRE 116 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 145 5e-34 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 126 2e-28 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 126 3e-28 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 124 6e-28 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 124 9e-28 UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas pha... 119 2e-26 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 119 3e-26 UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legione... 118 4e-26 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 118 6e-26 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 118 7e-26 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 116 2e-25 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 115 4e-25 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 113 1e-24 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 112 4e-24 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 108 5e-23 UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acin... 105 5e-22 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 104 8e-22 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 103 2e-21 UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pas... 103 2e-21 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 102 4e-21 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 102 4e-21 UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Hae... 101 5e-21 UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiace... 101 8e-21 UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacte... 101 1e-20 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 100 1e-20 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 100 3e-20 UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=... 99 4e-20 UniRef50_C9KJA0 Crossover junction endodeoxyribonuclease RusA fa... 98 6e-20 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 98 6e-20 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 96 2e-19 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 96 3e-19 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 96 3e-19 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 96 4e-19 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 96 4e-19 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 95 6e-19 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 95 8e-19 UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimi... 95 8e-19 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 95 9e-19 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 95 1e-18 UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leg... 95 1e-18 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 94 1e-18 UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ0... 94 1e-18 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 94 1e-18 UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus c... 94 1e-18 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 94 2e-18 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 93 2e-18 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 93 2e-18 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 93 2e-18 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 93 2e-18 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 93 3e-18 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 93 4e-18 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 92 4e-18 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 92 5e-18 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 92 6e-18 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 91 8e-18 UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella... 91 9e-18 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 91 1e-17 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 91 1e-17 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 90 2e-17 UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobacu... 90 2e-17 UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacil... 90 2e-17 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 90 2e-17 UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replicat... 90 2e-17 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 90 2e-17 UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira R... 90 2e-17 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 90 3e-17 UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium... 90 3e-17 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 88 7e-17 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 88 7e-17 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 88 9e-17 UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (H... 87 1e-16 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 86 3e-16 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 86 3e-16 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 85 7e-16 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 85 8e-16 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 84 1e-15 UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Ta... 84 1e-15 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 84 2e-15 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 83 2e-15 UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteri... 83 2e-15 UniRef50_Q87BV3 Uncharacterized protein PD_1345 n=13 Tax=Xylella... 83 2e-15 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 83 2e-15 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 83 3e-15 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 83 4e-15 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 82 6e-15 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 81 1e-14 UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp... 81 1e-14 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 81 1e-14 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 81 2e-14 UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium ... 80 2e-14 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 80 2e-14 UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus... 80 2e-14 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 80 2e-14 UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA fa... 80 3e-14 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 80 3e-14 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 80 3e-14 UniRef50_Q9PCT9 Uncharacterized protein XF_1666 n=1 Tax=Xylella ... 79 4e-14 UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacter... 79 4e-14 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 79 5e-14 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 79 5e-14 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 79 5e-14 UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus ... 78 7e-14 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 78 7e-14 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 78 8e-14 UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium... 78 8e-14 UniRef50_UPI0001C369A4 prophage Lp2 protein 24 n=1 Tax=Clostridi... 77 1e-13 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 77 2e-13 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 77 2e-13 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 77 2e-13 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 77 2e-13 UniRef50_A9W5I1 Putative uncharacterized protein n=1 Tax=Methylo... 75 5e-13 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 75 6e-13 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 74 1e-12 UniRef50_A6F0M3 Putative uncharacterized protein n=1 Tax=Marinob... 74 1e-12 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 74 1e-12 UniRef50_Q88UN4 Prophage Lp2 protein 24 n=2 Tax=Lactobacillus pl... 74 2e-12 UniRef50_Q1GG05 Putative uncharacterized protein n=2 Tax=Ruegeri... 73 2e-12 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 71 7e-12 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 71 9e-12 UniRef50_B3WDE7 Putative uncharacterized protein n=3 Tax=Lactoba... 71 9e-12 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 71 1e-11 UniRef50_B6W9X0 Putative uncharacterized protein n=1 Tax=Anaeroc... 71 1e-11 UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingell... 71 1e-11 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 71 2e-11 UniRef50_Q5YSM1 Putative uncharacterized protein n=1 Tax=Nocardi... 70 2e-11 UniRef50_Q2KZ60 Phage-related protein n=2 Tax=Bordetella avium 1... 70 2e-11 UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease... 70 2e-11 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 70 3e-11 UniRef50_Q4EJG1 Gp63 n=7 Tax=root RepID=Q4EJG1_LISMO 69 3e-11 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 69 6e-11 UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovi... 67 1e-10 UniRef50_UPI00004C2387 hypothetical protein SpyoM01000040 n=1 Ta... 67 1e-10 UniRef50_Q9CIB4 Prophage pi1 protein 15 n=4 Tax=root RepID=Q9CIB... 67 2e-10 UniRef50_Q6AC63 Phage-related protein n=1 Tax=Leifsonia xyli sub... 67 2e-10 UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV... 67 2e-10 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 67 2e-10 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 66 2e-10 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 64 1e-09 UniRef50_A5MC55 Putative uncharacterized protein n=2 Tax=Strepto... 64 1e-09 UniRef50_C5B0R6 Putative uncharacterized protein n=2 Tax=Alphapr... 64 1e-09 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 64 2e-09 UniRef50_Q9AZ79 RUS n=6 Tax=root RepID=Q9AZ79_9CAUD 64 2e-09 UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acineto... 64 2e-09 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 63 2e-09 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 63 2e-09 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 63 3e-09 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 62 5e-09 UniRef50_B1BBK8 Putative uncharacterized protein n=1 Tax=Clostri... 62 5e-09 UniRef50_Q854T6 Gp64 n=2 Tax=unclassified Siphoviridae RepID=Q85... 62 7e-09 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 61 1e-08 UniRef50_C3PI76 Putative uncharacterized protein n=3 Tax=Coryneb... 61 1e-08 UniRef50_C7R1F1 Endodeoxyribonuclease RusA n=1 Tax=Jonesia denit... 61 1e-08 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 60 2e-08 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 60 2e-08 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 60 2e-08 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 60 2e-08 UniRef50_A1B8H5 Putative uncharacterized protein n=1 Tax=Paracoc... 59 4e-08 UniRef50_B1MZE0 dTDP-glucose pyrophosphorylase n=2 Tax=Leuconost... 59 4e-08 UniRef50_C7Q4H8 Endodeoxyribonuclease RusA n=1 Tax=Catenulispora... 59 6e-08 UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 58 1e-07 UniRef50_UPI0001BC49BC hypothetical protein F3_00332 n=1 Tax=Fus... 58 1e-07 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 58 1e-07 UniRef50_B5GC73 Predicted protein n=1 Tax=Streptomyces sp. SPB74... 57 2e-07 UniRef50_A7A5C0 Putative uncharacterized protein n=1 Tax=Bifidob... 56 3e-07 UniRef50_C0W5T7 Gp53 family protein n=1 Tax=Actinomyces urogenit... 55 6e-07 UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence ... 54 1e-06 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 54 2e-06 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 52 5e-06 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 52 7e-06 UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthom... 51 9e-06 UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobaci... 50 2e-05 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 50 2e-05 UniRef50_A7H208 Crossover junction endodeoxyribonuclease RusA su... 49 5e-05 UniRef50_C3PIE5 Putative uncharacterized protein n=1 Tax=Coryneb... 49 5e-05 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 46 3e-04 Sequences not found previously or not previously below threshold: UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 46 4e-04 UniRef50_A7H0V1 Crossover junction endodeoxyribonuclease RusA su... 45 8e-04 UniRef50_B1I2Y2 Putative uncharacterized protein n=1 Tax=Candida... 45 9e-04 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 45 9e-04 UniRef50_Q7P5T9 Putative uncharacterized protein FNV0869 n=2 Tax... 44 0.001 UniRef50_B1I7E1 RUS n=5 Tax=root RepID=B1I7E1_STRPI 44 0.002 UniRef50_B2A5E1 Putative uncharacterized protein n=1 Tax=Natrana... 43 0.002 UniRef50_C7F4G5 Predicted protein n=1 Tax=Cyanophage PSS2 RepID=... 43 0.002 UniRef50_C5RA86 Possible dTDP-glucose pyrophosphorylase n=1 Tax=... 43 0.004 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 42 0.005 UniRef50_Q8ZS47 All7665 protein n=2 Tax=Nostocaceae RepID=Q8ZS47... 42 0.006 UniRef50_C9RCI0 Putative uncharacterized protein n=1 Tax=Ammonif... 41 0.015 UniRef50_Q8R8F6 Putative uncharacterized protein n=1 Tax=Thermoa... 41 0.015 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 40 0.029 UniRef50_C3U2J8 Putative uncharacterized protein n=1 Tax=Lactoco... 39 0.048 UniRef50_C7XQD1 Predicted protein n=2 Tax=Fusobacterium sp. 3_1_... 39 0.058 UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultu... 38 0.073 UniRef50_B9MP30 Putative uncharacterized protein n=1 Tax=Anaeroc... 38 0.083 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 118/120 (98%), Positives = 119/120 (99%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 MNTYSITLPWPPSNNRYYRHNRGRTH+SAEGQAYRDNV RIIKNAMLDIGLAMPVKIRIE Sbjct: 1 MNTYSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGLAMPVKIRIE 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE Sbjct: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI--GLAMPVKIRIE 60 + S+TLP+PPS N Y+R+ +G+T +S +G+ YR + I + + V + ++ Sbjct: 4 SVSLTLPFPPSVNTYWRNLKGKTLISEKGRRYRASAIAAIYQQLPRRSDAITGIVSVTVK 63 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 P RRD+DN KA FDALT A W DD QV + V KGGR E+TI +GN Sbjct: 64 MFPPTSHRRDIDNYLKAPFDALTHANIWKDDDQVKHADIAWCDVVKGGRFEITIRPIGN 122 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 126 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 YSITLPWPPSNNRYYRHNRGRTH-----VSAEGQAYRDNVARIIKNAMLDIGLAM--PVK 56 + LP+PPS N Y+RH +SA G+ ++ I + + P Sbjct: 1 MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLRRLPKPTSAPAS 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + I PD R RDLDN KA FDALT AG W DD+QV V PV G++E+TI++ Sbjct: 61 VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISK 120 Query: 117 MG 118 Sbjct: 121 YE 122 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 47/115 (40%), Positives = 72/115 (62%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M Y ITLP+PPS N Y+ H +GR + +G YR +V I L + + +++R+ Sbjct: 1 MRRYHITLPFPPSVNHYWYHAKGRHFIKEKGIQYRRSVMAEIMRLRLAVRFSGQIRVRVV 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + PDRR+RDLDNL KA DAL AG + DD Q++D +++ +GG+L++T+T Sbjct: 61 ANPPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHIIRGEKVQGGKLDITLT 115 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 4 YSITLPWPPSNNRYYR-----HNRGRTHVSAEGQAYRDNVARIIKNAML--DIGLAMPVK 56 LP+PPS N Y+R +G+ VS G+ ++ V I + A P + Sbjct: 1 MKFILPFPPSVNSYWRSPNKGTAKGKLLVSEAGRKFKHAVRAAIIEQLKAVPKPSASPAE 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + I H PD RRRDLDN KA FDALT AG W DD+QV + KGGR+E+TIT Sbjct: 61 VVIVLHPPDYRRRDLDNYNKALFDALTYAGIWEDDSQVKRMTIEWGGNAKGGRVEITITA 120 Query: 117 MG 118 Sbjct: 121 FN 122 >UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas phage OP2 RepID=Q2NPB1_9CAUD Length = 134 Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M +TLPWPP+ N +R +GR +SA + Y+ VA+++ L + + + Sbjct: 9 MTDLRLTLPWPPTLNSIWRAVQGRIVLSAAARDYKRAVAKLLPVGKAAAPLTGRLMVWVT 68 Query: 61 CHMPD---RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + P +R+ D+ N +K D LT WLDD+Q+ +++ GR E TI + Sbjct: 69 LYPPSTMGKRKWDIANREKIMIDCLTDQRIWLDDSQIDALVLLRGGADGIGRAEFTIQTI 128 Query: 118 GNE 120 ++ Sbjct: 129 TDD 131 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M T + LPWPPS N Y+ ++S + + + ++K + + V + + Sbjct: 1 MKTLDVLLPWPPSINHYWGARGRGRYLSPQARRWHKEAWAVLKAQ--GVRYSGEVAVYVF 58 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 H PDRR+RDLDN+ KA DAL AG DD QV V + P + G++ L + E+ Sbjct: 59 AHPPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVRLVVGEVK 116 >UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legionella pneumophila RepID=Q9AKY6_LEGPN Length = 120 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M+ LP+PP+ N YY+ +S +G YR + ++ + + I Sbjct: 1 MDILRFQLPYPPTINHYYKRTPKGLALSTKGIQYRHDAFYLLHKHRNHCK-DKRLAVTIN 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 PD+RRRD+DN+ K D++ AG + DD Q+ +++ V K G + + I+E + Sbjct: 60 LFPPDKRRRDIDNILKCLLDSMQHAGVYDDDNQIDMLTIIRRHVVKDGSVAVWISECSS 118 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 63/116 (54%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 LP+PP+ N Y+R VS G+ YR VA I++ L + L+ + I+I Sbjct: 3 ERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIA 62 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 PD+RRRDLDN+ KA DALT AG +DD Q + +V+ GGRL + I + Sbjct: 63 EPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPVSGGRLGVKIYPI 118 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 72/119 (60%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 MN Y LP+PPS N Y+R + ++S +GQ YR +V +II+ LDI ++I++ Sbjct: 1 MNEYQFVLPYPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVI 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +PD RRRDLDN+ K D+L AGF DD Q D RV++ GGRL + ITE+ + Sbjct: 61 ADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELES 119 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%) Query: 1 MNTYSIT-LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD---IGLAMPVK 56 M+ I LP+PPS N Y+RHN T++S + +A++ A+I+ V Sbjct: 1 MDENMIIELPFPPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNEMRQKSGCQKFEGEVS 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP---VTKGGRLELT 113 + ++ ++P++ +RD+DN K D+LT A W DD+QV + K+ KGG+ + Sbjct: 61 VLMQLYLPNKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEKIDNNGGVKGGKCVVA 120 Query: 114 ITEMGN 119 I E Sbjct: 121 INEYLE 126 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 4/116 (3%) Query: 3 TYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LP+PP+ N Y++H R G+ +++A+G+ ++ V + +N V + ++ Sbjct: 1 MVVLELPYPPTVNHYWKHTRNGKHYITAKGKTFQQEVRWLTRN---RPKFIGKVLLEVDI 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + PD R+RD+DN+ KA DALT AG +DD+ V K+P KGG++ + I E Sbjct: 58 YPPDNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPSIKGGKVIVRIKEF 113 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 4 YSITLPWPPSNNRYYRHNR-----GRTHVSAEGQAYRDNVARIIKNAMLD--IGLAMPVK 56 +++LP+PPS N Y+R GR VS G+ YR I + + + Sbjct: 1 MNLSLPFPPSVNGYWRAPNRGKLAGRHLVSERGRRYRAEAVAEILEQLRGMPQPVKGDLA 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + P R +RDLDN KA FD++ AG W+DD+Q+ PVTKGG Sbjct: 61 VSVMFCPPSRAKRDLDNYFKALFDSVINAGIWIDDSQIKKLEAEWGPVTKGGECIF 116 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LPWPPSNN YYRH RT +S + AYR V ++K+ +L +++ E Sbjct: 1 MECELYLPWPPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKDRVLPE-FTGEIELYAEF 59 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV-TKGGRLELTIT 115 + PD+R+RDLDNL K D L AG + DD+Q+V +VK GR + I Sbjct: 60 YPPDKRKRDLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEPHRPDGRAYVRIK 114 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 25/141 (17%) Query: 2 NTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 T+P P R +R R T+ A+ + Y+ + L P+KI Sbjct: 1 MIIEFTIPGKPVGQGRPRFSRHRGYVQTYDPAKSRQYKAIATMCAQRVYSGEPLETPLKI 60 Query: 58 RIECHM------PDRRR-------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 ++ + ++RR D+DN+ K D+L + DD QV+ Sbjct: 61 TVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLNGV-IYHDDKQVIQLV 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 K K R+E+T+ E+ Sbjct: 120 AFKAYAEK-PRVEVTVEELEQ 139 >UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acinetobacter baumannii AYE RepID=B0V859_ACIBY Length = 168 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 PPS N Y+ + R +S + + + V +++ +K+ + H P R+ RD Sbjct: 66 PPSVNHYWVASGKRRFLSNKARDFHALVRQVVPAHKS----TARLKLEVTFHFPTRQCRD 121 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +DN KA D+L K G +DD Q + V + V KGG ++L ++E+ Sbjct: 122 IDNYLKATIDSLVKCGLCVDDEQFDELLVKRGNVIKGGLIKLKVSEV 168 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%) Query: 3 TYSITLPW-PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 SI L P S N+ YR GR ++ +G+ + A + L PV + ++ Sbjct: 1 MLSIILEGQPVSVNQLYR---GRRFLTTDGKRTKLLNAVSARKQYRGAPLEGPVCVELQV 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + + D+DN+ KAA D+LT W DD Q+ + K+ R+ELT++++ Sbjct: 58 YFKSKASSDIDNVCKAALDSLTGI-LWKDDRQIQELHAYKLQDKLRPRIELTLSQL 112 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARI----IKNAMLDIGLAMPVK 56 ++T+ LP PPS N YYR ++S E + +R +V I N + Sbjct: 3 VHTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKRWFDKEQRLA 62 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG--GRLELTI 114 + + + +RR D+DN KA D L + G + +D Q+ D RVV+ V K G + + Sbjct: 63 MTVTLYPTNRRSFDIDNRLKALLDVLQEIGVYHNDNQIDDLRVVRGAVVKRELGFCVVEV 122 Query: 115 TEM 117 Sbjct: 123 KPC 125 >UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pasteurellaceae RepID=A3MZM1_ACTP2 Length = 122 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 7/122 (5%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRT-HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + I LP+PPS N Y+RH + T ++S EG+A+R V I K VKI+I Sbjct: 3 DYLEIALPYPPSVNHYWRHTKAGTHYISREGKAFRAKVLNICKQF---DPFNGAVKIQIY 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVV-KMPVTKGGRLELTITEM 117 + PD R RD DNLQKA FDALT +G DD + DYRVV + KGG + + I + Sbjct: 60 VYYPDNRSRDPDNLQKALFDALTASGLIKDDNNKIIKDYRVVGMDEIRKGGMVVIKIKGL 119 Query: 118 GN 119 + Sbjct: 120 DD 121 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 27/147 (18%) Query: 1 MNTYSITLPWPPSNNRYY--RHNRGR-------THVSAEGQAYRDNVARIIKNAMLDIGL 51 M +++LP+P S NRY+ R + + T+V+ E +AY++ VA + K+A + L Sbjct: 1 MPKITLSLPYPISANRYWASRIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVREPL 60 Query: 52 AMPVKIRIECHMPDRRRR------------------DLDNLQKAAFDALTKAGFWLDDAQ 93 A V+I + + DLDN QK DAL D Q Sbjct: 61 ACRVQIDYTLYPKRPQDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDGWQ 120 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 V + R+ +T+T + E Sbjct: 121 VRRIHAERGVPDGEARIVVTVTTLLEE 147 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 20/136 (14%) Query: 1 MNTYSITLPWPPSNNRYYRHNR--GRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKI 57 M +S T+P P R + GR + + +Y +A AM + P+ I Sbjct: 1 MMEFSFTVPGVPVGKGRPRFVKATGRAYTPEKTASYESLIAYAASQAMRGAQPINAPIGI 60 Query: 58 RIECHMP---------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 +++ P + D DN+ KA DAL W DD+QV + K+ Sbjct: 61 KVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGI-VWADDSQVARTSIAKV 119 Query: 103 PVTKGGRLELTITEMG 118 L + + +G Sbjct: 120 YGDV-PGLHVFVEALG 134 >UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Haemophilus parasuis 29755 RepID=B0QX07_HAEPR Length = 134 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 21/135 (15%) Query: 2 NTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 I LP+PPS N Y+RH R G+ ++S +G+ +R+ ++ V + + Sbjct: 3 RELEIALPFPPSVNHYWRHTRQGKHYISDKGKRFRELALLAC---FAELPFDGLVAVDVR 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVV---------KMPVT---- 105 ++PDRR RDLDNL K D+LT A DD+ VV + K Sbjct: 60 VYLPDRRDRDLDNLWKVIMDSLTHAKILKDDSWKYVVKESIEAVGEVRVNDKGEPEFIPE 119 Query: 106 --KGGRLELTITEMG 118 K GR+ + I E+ Sbjct: 120 IVKDGRVVVKIKELK 134 >UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiaceae RepID=A6TU92_ALKMQ Length = 141 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 3 TYSITLPWPP--SNNRYYRHNRGRTHVSA-----EGQAYRDNVARIIKNAMLDIGLAMPV 55 T+P P +N H G+ + AY + +A I L + Sbjct: 1 MLKFTIPGRPVSKSNFKLTHKNGQVWMPKSGKHSRYVAYENMIAGYINQQYAGPQLTQQL 60 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + + PDRR DL N K+ D + K+G +D Q+ + ++ R+E+ + Sbjct: 61 ITILRLYFPDRRMGDLHNYPKSICDGIEKSGIISNDKQLRPVLLFDFIDSENPRVEIELY 120 Query: 116 EMG 118 + Sbjct: 121 DFE 123 >UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q091_9GAMM Length = 126 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 8/126 (6%) Query: 1 MNTY----SITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPV 55 M T+P PPS N Y +H RG +S E + Y+ + + I + Sbjct: 1 MKKLNLLAQFTMPVPPSVNGYLKHDKRGIARLSDEAREYKMDAYQAIGRYAPSEPSTKRL 60 Query: 56 KIRIECHMPDRR---RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + H + +RDLDN QK DAL A F+ +D Q+ + + V GG +E+ Sbjct: 61 ALELIIHFGSKAIDAKRDLDNCQKLILDALEYARFFNNDQQLDEIVCKRGEVINGGLIEV 120 Query: 113 TITEMG 118 T+ E+ Sbjct: 121 TLCEIE 126 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARI---------IKNAMLDIGLA 52 +LP PPS N Y R +S E QA++ V R I L + Sbjct: 1 MVVQFSLPLPPSINSQYVTVGNRRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQ 60 Query: 53 MPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + ++ + RRDLD K D++ ++D +VVD +VK RLE+ Sbjct: 61 GYIALFLDFYFETPLRRDLDGGLKITQDSIC-TSLGINDNRVVDIHLVKRIDPLHPRLEV 119 Query: 113 TITEMGN 119 + + + Sbjct: 120 ELEALSD 126 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 26/142 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLD-IGLAMP- 54 M + + T+P P + R T+ + +Y + V AM + Sbjct: 1 MTSITFTVPGTPVGKGRPKFARRGKFVTTYTPEKTASYENLVKLAAAKAMDGRQPIDGAA 60 Query: 55 -VKIRIECHMPD-----------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 V I + P + D+DN+ K FDA+ + W DD QV+D Sbjct: 61 QVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFDAMNEI-VWQDDKQVID 119 Query: 97 YRVVKMPVTKGGRLELTITEMG 118 K ++ R E+ IT++G Sbjct: 120 LSCYKRY-SETARAEVKITQIG 140 >UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=2 Tax=Aquificaceae RepID=RUSA_AQUAE Length = 126 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%) Query: 1 MNTYSI---TLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M + LP P S NRY R G+ + ++ + + + Sbjct: 5 MEEIELYLSKLPVPKS-NRYIRPKGGKVFKPPRVTNWEARAIWELREQFKGDAIDYEISV 63 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 I +P+RR+RD+DN+ K+ +D + KAG +D + + VK + + I Sbjct: 64 DITLILPNRRKRDIDNMLKSLWDVMEKAGVIKNDNLIFEVHTVKKIEKGKEGVIIKIRPF 123 Query: 118 GN 119 + Sbjct: 124 QS 125 >UniRef50_C9KJA0 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJA0_9FIRM Length = 125 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAM----PVKI 57 IT+P P + N + + +G ++ G+ + N ++ AM + G V + Sbjct: 3 KELFITIPVPITENHAFFYRKGMKILNKRGKEWMKNAEDSMRVAMEEQGWQTVNNEKVIV 62 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + + PD+R RD N K D++ AG +D ++ + + RLE+ I Sbjct: 63 ELWHYWPDKRVRDCSNSLKLLCDSIQNAGIVNNDRWLLCRQQDFSVDRENPRLEMRIRRF 122 Query: 118 GNE 120 NE Sbjct: 123 NNE 125 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 25/141 (17%) Query: 2 NTYSITLPWPPSNNRYYRHN----RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 IT+P P + R + + Y+ VA L +++ Sbjct: 1 MEIKITVPGQPVPQGRPKFTTIGGHARAYDPKKSVDYKRIVAYHAMQHKPKQLLEGELEV 60 Query: 58 RIECH------MPDR-------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 I + R + D DN K DA+ W DD Q+VD Sbjct: 61 EILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAMKGI-IWKDDGQIVDLI 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 K +K R+E+T+ +G Sbjct: 120 ARKYYSSK-PRIEITVRTLGE 139 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 23/141 (16%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 M ++I +P P +R+ +T+ + + Y+ +A + K ++ P++I+ Sbjct: 1 MIKFTINIPPHPQERPRFRNAGNFVQTYDPPKSKEYKKKIANVAKMYAPGTPISTPIQIK 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + + R D+DN KA DAL F DD ++V+ Sbjct: 61 LIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALNGIMF-SDDGKIVELIA 119 Query: 100 VKMPVTKGGRLELTITEMGNE 120 K R E++ITE+ +E Sbjct: 120 YKRYSDL-PRTEVSITELVSE 139 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 50/147 (34%), Gaps = 29/147 (19%) Query: 1 MNTYS---ITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGL-A 52 M+ T+P P R R R A+ AY VA + A+ L A Sbjct: 1 MHDLRPVVFTVPGEPVGKGRPRIGRVGAHARMFTPAKTVAYEGLVAMAAQEALAGRSLIA 60 Query: 53 MPVKIRIECHMPDRRRR-------------------DLDNLQKAAFDALTKAGFWLDDAQ 93 PV I + P R D DN KA DAL W DD Q Sbjct: 61 GPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDALNGVA-WKDDTQ 119 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 VV+ + K R+E+ I + + Sbjct: 120 VVNVMLAKRYAEV-PRVEVKIVPLMAQ 145 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 PPS N + + + S G+ + + +K +K+ I + R +RD Sbjct: 2 PPSVNTLWVNKHRGRYKSKRGKEFEEIAKYELKKQYKGEVTKKRLKVEIWLYFKTRAKRD 61 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +DN KA D+L DD + D V K+ ++ + I E GN Sbjct: 62 IDNYNKAILDSLKGI-VIEDDELIDDLAVHKIKGHGKDKVYIEILERGN 109 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVK 56 N +P R T++ + +R+ + M V Sbjct: 198 NLVRFCIPGTVVPKARPRVTSNGTYMPNRYREWRNRAEIELYRQMSQFHSTHKFPLQKVA 257 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLEL 112 + + R DLDN+ A DALT AG +DD + V + TK + + Sbjct: 258 VSLRFFGNHRTNSDLDNMAGACLDALTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWI 317 Query: 113 TITEM 117 I + Sbjct: 318 EIQPL 322 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 5/118 (4%) Query: 4 YSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH 62 T+P P R + G + + Y V N L PV + ++ + Sbjct: 1 MHFTVPGRPVPKYRPRVGKHGNIYTPQNCREYERTVGLYASNVFP-QPLTGPVTLGVKFY 59 Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 RR DLDN KA D L W DD QVV + R E+ + +GN+ Sbjct: 60 F-SRRPGDLDNYVKAISDGLNGIA-WQDDRQVVKLFASLKRGSPE-RAEVVVQRIGND 114 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 28/145 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT-----HVSAEGQAYRDNVARIIKNAMLDIGLA--M 53 M T T+P P + R + + Y + + + +I Sbjct: 1 METVRFTVPGAPKGKARAKTVRSKKGGTFSYTPEGTMLYENLIKCCYRQESNNIIFNDGQ 60 Query: 54 PVKIRIECHMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 P+K+ I + P ++ D+DN+ K+ DAL K + DD QV Sbjct: 61 PLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILDALNKLA-YRDDTQV 119 Query: 95 VDYRVVKMPVTKGGRLELTITEMGN 119 V + K + R+E+ I E+ N Sbjct: 120 VTLHMEKHYA-EDPRVEVEIEEIKN 143 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 94.5 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 22/136 (16%) Query: 2 NTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + + P R R G +++ + +AY+D I+KN L +K++ Sbjct: 15 QVIKLVIDGEPVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKNQYKGEPLMGALKVKTT 74 Query: 61 CHM----------PDRR---------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK 101 + +RR + D+DNL KA DA T W DD Q+V + K Sbjct: 75 FYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGV-VWHDDNQIVSVEMDK 133 Query: 102 MPVTKGGRLELTITEM 117 M + R+E+ + E+ Sbjct: 134 MYAEE-PRVEMEVHEL 148 >UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimia haemolytica RepID=A7JUB5_PASHA Length = 119 Score = 94.5 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 3 TYSITLPWPPSNNRYYRHNRG-RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LP+PPS N Y+R R V G+ Y+ +N V+I+ + Sbjct: 1 MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQN---KPKFGGQVEIKCDV 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 + PD R RDLDNL K D+L + +DD++ V KGG + + I E Sbjct: 58 YFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGNQKGGAVIVRIKE 114 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 94.5 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 31/144 (21%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM 63 +T+P P R + T+ + Y V + + L +KI I+ + Sbjct: 16 IKLTIPGEPCAKGRPRVGKFGTYTPEKTLNYETLVKELYIIQHANKKLQGQLKIDIKAYF 75 Query: 64 P-----------------------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 ++ D DN+ K DAL + DD+Q+ Sbjct: 76 KIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDNVGKIISDALNGLA-YDDDSQI 134 Query: 95 VDYRVVKMPVTKGGRLELTITEMG 118 V V K + R+E+ I+E+ Sbjct: 135 VSAIVEKFY-SNDPRVEVEISEVA 157 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 NTYSITLPW-PPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIG-LAMPVKIR 58 + I +P PP+ N +YR +R G + +AEG+A++ V +++ A + A V + Sbjct: 21 KIFEIEIPGLPPTVNHFYRTSRTGVRYKTAEGKAWQAGVVLLMRTANKNYQAYAGEVGLY 80 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 I+ D+RR D+DN KA D L AG +D QV++ ++ + + I ++ Sbjct: 81 IDLMSTDKRRWDVDNRIKALQDCLASAGVIKNDTQVIELHARRVHGD-DEKTNVMIYKLA 139 Query: 119 N 119 Sbjct: 140 E 140 >UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZX46_RHILW Length = 119 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 1 MNTYSITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M ++S LP+PPS N +R+ RG +A+ A+ + + ++ L V Sbjct: 1 MKSFSAILPFPPSVNNLFRNIARGGRVKTAKYCAWEKQADAAMPSGIVK--LQGEVIAVY 58 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT--KGGRLELTITE 116 PDRRRRD+ N +KA D L + G DD Q+VD R+ K G + + E Sbjct: 59 VLGRPDRRRRDIANTEKAVGDTLVRWGVLEDDCQIVDIRLRWGRADEIKPGECRVELVE 117 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 27/143 (18%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHV----SAEGQAYRDNVARIIKNAMLDIGLAM---- 53 TLP P R R V + Y+ ++A I + A + GL Sbjct: 1 MRIKFTLPGKPVAQGRPRFYRKGNFVVATDPKPSKVYKADIAYIAQKACEEAGLDGLFEG 60 Query: 54 PVKIRIECHMP----------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 P+ I+I + P +R D DN+ K+ D L + DD Q+ + Sbjct: 61 PLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV-LYHDDGQISEL 119 Query: 98 RVVKMPVT--KGGRLELTITEMG 118 V K +G R+E+ + +M Sbjct: 120 IVRKRIAAQGEGPRIEVELYKME 142 >UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ09_9CAUD Length = 131 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 YS+ LP+PPS NR YR GR +S + Y V + +A +++ + Sbjct: 4 TRYSLILPFPPSLNRAYRAVAGRVVLSKAARQYGVAVRNALP-VGRAERIAGRLRVVVTV 62 Query: 62 HMPDR---RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 H P R R D+ N +K DALTKAGFW DD+Q+ +RV + Sbjct: 63 HPPARLVGRAWDVANREKLLSDALTKAGFWRDDSQIDSFRVDRGE 107 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 2 NTYSITLPWPP-SNNRYYR-HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 +P+ P S N ++R G ++S G+ +RDNV IK VK+++ Sbjct: 1 MKQRFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKLYKYKT-YEKSVKVKL 59 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 + + D+R RDLDN K D+ ++DD Q+ K + + E+ Sbjct: 60 DLYFADKRTRDLDNYFKGILDSFKG-FLYVDDKQIDKIEATKHIGAGKNYFIIEVEELQ 117 >UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR43_9FIRM Length = 124 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLA----MPV 55 M +TLP PS N YR+ R ++ G+A+++ I K A G + Sbjct: 1 MTMLKLTLPIVPSVNHCYRNVSIHRRVLTPIGKAWQEKAQYIAKAAAAKQGWRFSKRQKL 60 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + + PD R RD+ N +K D L + +D V+ + R+E+ I Sbjct: 61 VMEYWTYWPDYRTRDVHNQEKLLLDTLEGI-LYDNDKWVLPRAMDFAVDKVNPRIEILIY 119 Query: 116 EMG 118 + Sbjct: 120 PLE 122 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 6 ITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP 64 + LPWPP S N Y ++ E A+RD VA + + ++ V++RI + P Sbjct: 9 LCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGHKAEVP----VELRIRLYPP 64 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTI 114 D RRRD DN+ K DAL +AG DD V YR+ GG +E+ Sbjct: 65 DNRRRDADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEWGQARPGGAIEVEW 116 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 1 MNTYSITLPWPPSNNRYYR-HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M + I + P R GR + E + + + + ++ + + PVK+ I Sbjct: 1 MAYFKIEIQTKPVPKARPRLGANGRMYTPKETREFEELIGWTTRSVVRK-PIEKPVKVNI 59 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + + + R D DN+ KA D L+ F DD QVVD R+ K+ ++ ++I E Sbjct: 60 DVY--SKTRADFDNIAKAILDGLSGVAFI-DDRQVVDLRIRKLTPVNCEKIVISIRE 113 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 27/143 (18%) Query: 1 MNTYSITLPWPPSNNRYYR----HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M+ T+ P R + + A+ + ++ VA + + + PV Sbjct: 1 MDCIKFTVYGEPVAQGRPRGSIRNGKVHMRDPAKSKYFKQYVALVASQHRPETIITGPVS 60 Query: 57 IRIECHMPDR---------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + ++ + P + D+DN K DAL + DD+QVV Sbjct: 61 MDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDALNHL-IYKDDSQVV 119 Query: 96 DYRVVKMPVTKGGRLELTITEMG 118 D +V K ++ R+E+ I E+ Sbjct: 120 DLKVSKFY-SEEPRVEVMIREVS 141 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 25/140 (17%) Query: 4 YSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 I P R + R + + Y+ + + K D L P+ + + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRLYDPKKVSTYKKQLGMMCKFQYKDKPLDGPLIVSL 60 Query: 60 ECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 + + + + D DN K+ D L W DD Q+V Sbjct: 61 KFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLNGL-LWEDDNQIVKIVAE 119 Query: 101 KMPVTKGGRLELTITEMGNE 120 K + R+E+ + + Sbjct: 120 KYYSDR-PRIEIEVERLEQN 138 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIEC 61 ITLP+ R RG + +AY VA + + AM P+++ IE Sbjct: 4 EVHITLPFAAIGKGRPRVYRGIASTPPKTRAYEHQVATLARAAMRGRLPFDGPIRVLIEI 63 Query: 62 -------HMPDRR------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 RR + D+DN KA D + + DD Q+V + K Sbjct: 64 DVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILDGMNGIA-YRDDTQIVIALLSKR 122 Query: 103 PVTKGGRLELTITEMGNE 120 + ++ + + E+ + Sbjct: 123 YAS-DAQVRIAVEEIAGQ 139 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 25/137 (18%) Query: 3 TYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 I +P P R + R++ + + Y+ VA +K+ + V ++ Sbjct: 1 MIRIEVPGEPVPQGRPRFSGRGGFVRSYDPPKSREYKKKVAAAVKDQYHGDPVDYAVHVQ 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + P ++ + D+DN KA DA T W+DDAQ+V + Sbjct: 61 LSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACTGL-LWVDDAQIVSTKT 119 Query: 100 VKMPVTKGGRLELTITE 116 K ++ +E+ + Sbjct: 120 NKYY-SEDPHVEMLVMP 135 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 8/121 (6%) Query: 3 TYSITLPW-PPSNNRYYRH----NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA---MP 54 + L PS N YR+ R +S E + + + + + G Sbjct: 1 MNRLVLEGLVPSVNHMYRNAYKGKRAVRVLSQEAREWYEETVILASDWRKKNGWQTAGGK 60 Query: 55 VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 V +R+ + PDRRRRD N K DAL A F+ DD + + + R+E+ + Sbjct: 61 VIVRLWFYFPDRRRRDTHNGLKILLDALEDARFYDDDKHALPQVMDYGIDRERPRVEIEL 120 Query: 115 T 115 Sbjct: 121 E 121 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 92.2 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 25/141 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRGR------THVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 +TLP+P S NRY+R R T VS E +AY++ V R + A + V Sbjct: 1 MIELTLPYPISANRYWRTYLPRGCAAPVTTVSPEARAYQNRVRRAAREAGVLCPFPGRVA 60 Query: 57 IRIECHMPDRRRR------------------DLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + + DLDN QK FDA+ + +D + Sbjct: 61 VSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGI-VYENDNLIRRIE 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 + R+ +T+ + + Sbjct: 120 GERAVPDGDARVLVTVEPIED 140 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 25/139 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 I + P R + R++ + + Y+ +V ++ L + + Sbjct: 1 MIRIEVAGEPVPQGRPRFSGRGGFVRSYDPPKSKEYKKHVKEEVQQQYHGKPLEGQLLVE 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + P ++ + D+DN KA DA T W+DDAQ+V + Sbjct: 61 LSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACTGL-LWVDDAQIVSTKT 119 Query: 100 VKMPVTKGGRLELTITEMG 118 K ++ +E+ + Sbjct: 120 NKYY-SENPHVEMLVIPYE 137 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 26/141 (18%) Query: 2 NTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVK 56 +P P R R RT+ + Y + V + AM D A PV+ Sbjct: 16 RRVVFVVPGKPVAKGRPRFVRRGPHVRTYTPEPTERYENLVKMAAREAMRDSEPYAGPVR 75 Query: 57 IRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + ++ +P ++ D DN+ KA D + + DD QVVD Sbjct: 76 LIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALKDGMNGV-VYGDDGQVVDL 134 Query: 98 RVVKMPVTKGGRLELTITEMG 118 V K T + + E+ Sbjct: 135 WVSKRYAT-TPGVRIEAIELN 154 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 91.4 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 22/131 (16%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM-LDIGLAMPVKIRIEC 61 S T+ P R R T+ + + Y +V + AM V + + Sbjct: 23 RVSFTVEGVPVGKARARVTRNGTYTPKKTRRYEHDVRTVAMQAMGALRPCRDAVHVSLVV 82 Query: 62 HMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 +P R DLDN +KA DAL + DD+Q+ D K Sbjct: 83 FLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDALNGV-VYHDDSQICDVVKSKR 141 Query: 103 PVTKGGRLELT 113 + R+ + Sbjct: 142 YSDR-PRVVIE 151 >UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W1_HAMD5 Length = 91 Score = 91.1 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIG---LAMPVKIRIE 60 I LP+PPS N Y+ R ++S + ++ A + + + G V + + Sbjct: 1 MRIELPFPPSVNHYWVRTARRVYLSEAAKRFQRLTAIEVAKSSMKQGHRSFPGDVSVALT 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDA 92 H+PD+R RD+DN K DALTKAG W DDA Sbjct: 61 -HLPDKRVRDVDNYPKGVLDALTKAGIWSDDA 91 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M + LP+P S NRY+R R R SAE AYR+ V RI + A + V + + Sbjct: 56 MRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGA-MPSEGAVAVYVR 114 Query: 61 CHMPDRRRR-------DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK-MPVTKGGRLEL 112 + DLDN K DAL + +D QV GG L + Sbjct: 115 LIPKANKDGGANKTVIDLDNALKVTLDALQGVA-YHNDRQVRRIAADYADEPVAGGGLAV 173 Query: 113 TITEM 117 + E+ Sbjct: 174 EVGEL 178 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%) Query: 2 NTYSITLPWPPSNNRYYRHNR--------GRTHVSAEGQAYRDNVARIIKNAMLDIGLAM 53 T P PPS N Y + ++ + E + Y+ N+ +IK + Sbjct: 3 EKLVFTSPIPPSVNHYLAYRTIIKNGKPMAMSYKTKEAKDYQKNIIELIKKEVEKQRWVK 62 Query: 54 P------VKIRIECHMPDRRRRDLDNLQKAAFDALTKAG-FWLDDAQVVDYRVVKMPVTK 106 + + + P R D +N K DA+T W+DD Q+ + + K Sbjct: 63 SDNKFQHYYMDVVFYFP-RVDMDANNYFKCLADAITDTELVWIDDTQLCERVMGIYYDNK 121 Query: 107 GGRLELTITEMG 118 R+E+ I + Sbjct: 122 NPRMEIEIKPVN 133 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 26/144 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAML-DIGLAMPV 55 M T+S T+P P + + R + E Y + V + K D + V Sbjct: 1 MTTFSFTVPGKPFGKQRPKATRRGVHASVYTPKETVNYENLVVAMFKQKYPLDKPIDGEV 60 Query: 56 KIRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 + I + + DLDN+QK +DAL + DD+ ++ Sbjct: 61 RGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYDALNGIA-YTDDSHIIA 119 Query: 97 YRVVKMPVTKGGRLELTITEMGNE 120 R K R+E+ I N+ Sbjct: 120 MRCAKFYSDV-PRVEVLIEGAVND 142 >UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U8U8_HYDS0 Length = 150 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 4/122 (3%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD----IGLAMPVKIR 58 I+ P NRY R G + ++ + I + + V + Sbjct: 7 YLFISEPPKGKANRYIRQKGGAVFKPWKISSWETKASWEISLQLKKLKFKEPFSCKVSVE 66 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 +PD+RRRD+DN+ K +D L K +D + + +K + + I Sbjct: 67 AIIFLPDKRRRDIDNMLKTLWDVLEKNDVIKNDNLIYEINTIKHVEKGLQGIFIKIKPYE 126 Query: 119 NE 120 + Sbjct: 127 EQ 128 >UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ1_ALIAD Length = 131 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 5 SITLPWPPSNNRYYRHN------RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP---- 54 + LP PPS N YR + ++++ Q +R + A + + G MP Sbjct: 3 RLILPLPPSVNHAYRTYVHPQTGQRIRVLTSKAQKFRRDAAYLALRWRQETGWTMPQPGT 62 Query: 55 -VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 V +R+ P RRR D N +K DAL + +D V+ + K RLE+ Sbjct: 63 KVVLRLWYFWPSRRRMDTHNREKVLLDALEGV-LYPEDRWVLIQEMDFEVDRKRPRLEIE 121 Query: 114 I 114 + Sbjct: 122 V 122 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 23/137 (16%) Query: 2 NTYSITLPWPPSNNRYYR--HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 S ++ P R + + Y VA+ A D L +++ I Sbjct: 1 MEISFSIDGKPFGKERPRPNRTGHGVYTPERTKMYEYKVAQSASLAFFDEPLDSDIRVCI 60 Query: 60 ECHM-----PDRRR--------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 + +R+ D DN+ KA D + + DD QV++ +V Sbjct: 61 SAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGMNGV-VYKDDKQVIELKVT 119 Query: 101 KMPVTKGGRLELTITEM 117 K K R+++++ E+ Sbjct: 120 KQYAEK-PRVDVSVEEI 135 >UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replication protein, complete cds n=3 Tax=Bacillus subtilis RepID=O52945_BACSU Length = 185 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 14/132 (10%) Query: 1 MNTYSITLPWPPSNNRYYRHN---RGRT-----HVSAEGQAYRDNVARIIKNAMLDIGLA 52 M + + P PPS N Y + GR + S E + Y+ +K+ M + Sbjct: 1 MKSLRLVSPLPPSVNNYLSYKVSSNGRRKFVQAYPSEETKIYKSFFTDYVKDQMNEQEWE 60 Query: 53 MPVKIRIEC----HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP-VTKG 107 P K ++ DR+R+D +N K FD T+AG +LDD V ++ ++ Sbjct: 61 QPEKGKLVFVKIKFFLDRKRKDPNNFLKVPFDVFTEAGVYLDDD-VALPVAERVYIDSQN 119 Query: 108 GRLELTITEMGN 119 RLE I E N Sbjct: 120 PRLEFEIYEASN 131 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 23/134 (17%) Query: 4 YSITLPWPPSNNRYYRHNR--GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 I + P + R N G T+ + Y + V + L V I Sbjct: 1 MKIVIDGKPMGKQRPRFNSKTGNTYTPDKTVNYENWVKLCYQQQCKGEKLTGEVVAFINA 60 Query: 62 HMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + + + D+DN+ K D+L + DD Q+V + K Sbjct: 61 YYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLNGLA-YKDDKQIVFCAISKW 119 Query: 103 PVTKGGRLELTITE 116 + R+E+ + E Sbjct: 120 YG-ENPRVEVILEE 132 >UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira RepID=B5VV93_SPIMA Length = 278 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 9/124 (7%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAM-----PVKIR 58 S + R T++ + +R+ + + + L + Sbjct: 154 ISFVIEGAVVPKARPRVTSNGTYLPPRYREWRNRAEVELYRQISERNLTNKFPLRRAAVT 213 Query: 59 IECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLELTI 114 I R D+DNL A DALT AG +DD + RV P + + I Sbjct: 214 IRLFGNHRTNSDIDNLAGACLDALTLQGAGVLMDDRLSCLPKLRVEFFPDIPKTGVWIDI 273 Query: 115 TEMG 118 + Sbjct: 274 EPLS 277 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 29/146 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG-----RTHVSAEGQAYRDNVARIIKNAMLDIGL-AMP 54 M +P P + + R + + +Y +A + AM L P Sbjct: 1 MTIVRFEVPGTPVGKGRPKVSTRGGKFARMYTPEKTASYEGLIALSARQAMGGRPLIDGP 60 Query: 55 VKIRIEC--------------------HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 V + + +P + + D DN+ KA FD + W+DD Q Sbjct: 61 VDVSLMIRLAVPASWSKKKQAAALAGQVLPTK-KPDADNVLKAVFDGMNGV-VWVDDVQA 118 Query: 95 VDYRVVKMPVTKGGRLELTITEMGNE 120 + K + + + + +MG + Sbjct: 119 CGVMLRKRYA-QTPGVTVVVRQMGGD 143 >UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q119T1_TRIEI Length = 270 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 9/123 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVK 56 ++ +P R T++ + + +R+ I + + L Sbjct: 145 TIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAA 204 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLEL 112 I I R DLDNL A DALT AG DD + + +P K + + Sbjct: 205 ISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQDDRLSCIPKLNIEYIPHIKKIGVWI 264 Query: 113 TIT 115 I Sbjct: 265 EIK 267 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 28/142 (19%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVS----AEGQAYRDNVARIIKNAMLDIG-LAMPVKIR 58 +TL P R R + + + + +R++ +I N + L ++ R Sbjct: 1 MKLTLNIEPKPQSRPRFARRGSFTTTYEDKDMKTWRNHCQLLIANQYMGQPILEGALRTR 60 Query: 59 IECHM---------------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + ++ P ++ D+DN +KA +D+++ + DD Q+ + Sbjct: 61 LRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDSMSGI-VFQDDGQIALH 119 Query: 98 RVVKMPVTKGGRLELTITEMGN 119 V K + R+E+ I M + Sbjct: 120 DVGKFY-SLNPRIEVEIEVMKS 140 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 28/146 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAMLDIGL-AMPV 55 M I + P R R + E + +R + +I+ A L P+ Sbjct: 1 MIYQKIVINLEPKAQSRPRFARCGRGVVAYEKKEMRVWRAKCSELIEEAFRAEELMEGPL 60 Query: 56 KIRIECH--MPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 KI + + P ++ D+DN KA D++T + DD QV Sbjct: 61 KIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSMTGV-IFKDDGQV 119 Query: 95 VDYRVVKMPVTKGGRLELTITEMGNE 120 V+ R K+ K R+E I EM + Sbjct: 120 VECRARKLYSLK-PRIEFEIKEMLDN 144 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 27/144 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M I LP P R R T+ + +AY+ V ++ A + P+ Sbjct: 1 MEEMRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKVYLRKAKPKLIEKGPIM 60 Query: 57 IRIECHMPDR---------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + ++ ++ DLDN KA DA + +D Q+ Sbjct: 61 AHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAVTDAAEGI-LYKNDGQIA 119 Query: 96 DYRVVKMPVTKGGRLELTITEMGN 119 K+ + R E+ I + Sbjct: 120 VMVCQKLYSMRQ-RTEIEIMSLEE 142 >UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) n=1 Tax=Persephonella marina EX-H1 RepID=C0QUS6_PERMH Length = 148 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MNTYSITLPWPPSNNR-----YYRHNRGRTHVSAEGQAYR-DNVARIIKNAMLDIGLAMP 54 MN Y ++ P NR G+ ++ + + + + ++ L P Sbjct: 1 MNIYFLSFIPPSKANRVKINLRAFSKSGKRYIVPKDVSLKINRAIWELQKQSSGEPLKDP 60 Query: 55 VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 V+I+I+ +PDRRRRDLDN+ K D L AG DD + + K + + + + Sbjct: 61 VEIKIDFILPDRRRRDLDNIMKTLGDCLVYAGIIEDDNLIFKQTLEKHIIKGKEGVIIRL 120 Query: 115 TEMGN 119 + Sbjct: 121 KKYNE 125 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 24/138 (17%) Query: 2 NTYSITLPWPPSNNRYYRHN--RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 + T+ P R N RT+ + ++Y + + + ++ + +K+ + Sbjct: 5 MKVNFTIYGEPVGKERPRFNLATKRTYTPNKTKSYEELIKWLYQSKVKHY-FEGYIKMTL 63 Query: 60 ECHMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 C+ ++ D+DN+ K D+L + DD Q+V+ Sbjct: 64 RCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSLNGIA-YKDDTQIVEVVAS 122 Query: 101 KMPVTKGGRLELTITEMG 118 K K R+E+ + ++ Sbjct: 123 KYYSDK-PRVEVILEDIS 139 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 11/105 (10%) Query: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR----------RRRDLDNLQ 75 + + + R + + D + P+++ + + + D+DN+ Sbjct: 50 YEPEKLKKTRALLMERLDEHKPDEPMHGPLRLVVTWCFKKKGKHVDGEYKTTKPDVDNML 109 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 K D +T+ GFW DD VV K + + I EM + Sbjct: 110 KLLQDCMTRLGFWDDDRFVVSLISEKYWADV-PGIYIEIKEMNQD 153 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 44/140 (31%), Gaps = 28/140 (20%) Query: 4 YSITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGL-AMPVKIR 58 S +P P R + R + +Y +A AM L V + Sbjct: 7 VSFLVPGEPVGKGRPRIGKVGNHARMFTPQKTASYEGLIALAGTEAMAGRTLLEGAVMVE 66 Query: 59 IECH--------------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + P + + D+DN+ KA +D L W DD QVVD Sbjct: 67 MRIVLAIPQSMSKKRKAMAIAGELFPTK-KPDMDNVIKAIYDGLNGV-VWKDDVQVVDAF 124 Query: 99 VVKMPVTKGGRLELTITEMG 118 V K + + I + Sbjct: 125 VRKRYGEV-PGVHVRIVPLE 143 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 84.5 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 22/136 (16%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVA-RIIKNAMLDIGLAMPVKIRIEC 61 + P R RG + ++ +AY + +++ +PV + +EC Sbjct: 1 MIEFCVFGDPRGKGRPRF-RGHAYTDSKTRAYERMIQGAFLQSGESMFPEKVPVGVEVEC 59 Query: 62 HMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + ++ D DN+ K DAL + DD QV D + K Sbjct: 60 YFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALNGLA-YKDDTQVSDMIIRKR 118 Query: 103 PVTKGGRLELTITEMG 118 G + + I E+ Sbjct: 119 YGRNEGYIRVRIWEVK 134 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 18/132 (13%) Query: 3 TYSITLPWPPSNNRY------YRHNRGR------THVSAEGQAYRDNVARIIKNAMLDIG 50 + P PPS N Y G+ + ++E + Y+ + +K + Sbjct: 21 ILKLVSPIPPSVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKKYKKEFIKYVKEEVRKQK 80 Query: 51 LAMPVKIRIECHMP-----DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 + + DR +D N K DAL ++DD ++ + Sbjct: 81 WDITCTKDKHFYFDTIFHFDRVDKDEQNYYKCLCDALNGLA-YIDDRNILTRCFKIDYDS 139 Query: 106 KGGRLELTITEM 117 R+E+TI + Sbjct: 140 INPRIEITIHPV 151 >UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNX0_CLOBO Length = 209 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 8/109 (7%) Query: 15 NRYYRHNRGRTHVS-------AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD-R 66 N + +GR + Y + +A + +I + ++ + + Sbjct: 19 NFKLSNTKGRAILPYNSGKYHDRYGVYEELIAYEARLQNPNIFFTESLIAILKVYYKSQK 78 Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 R D N+ K+ FD + K+G ++DAQ+ + + +K R EL + Sbjct: 79 RHPDTTNIPKSIFDGIEKSGLIINDAQIRHLIIEEHYDSKNPRFELELY 127 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 21/124 (16%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIE 60 +T+P + R GR A+ ++ +A + +AM L PV + IE Sbjct: 1 MVVVVTIPGEVTGKGRPRIWNGRAVTPAKTRSKEGVIASLAMDAMGGCDPLTGPVLVTIE 60 Query: 61 CHMP-------------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK 101 +P ++ DLDN+ K DA+ + DDAQ+ K Sbjct: 61 AVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVNGI-VFADDAQITHIIASK 119 Query: 102 MPVT 105 Sbjct: 120 RYGV 123 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIE 60 TY +P P R R + + V L V + + Sbjct: 4 MTYDFDIPGEPVAKGRPRFYGYRAVTPQHTRDAEELVRNQFHMFYPHAEPLDGDVMMILM 63 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + + DLDNL+K DAL ++DD QV Sbjct: 64 FYKGRHGKPDLDNLEKLVKDALNGLA-YVDDQQVK 97 >UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VTC7_9CLOT Length = 124 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 4 YSITLPWP-PSNNRYYRHNRGRTHVSAEGQA-YRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + P N Y R H +A+ + + I ++ PV +R Sbjct: 1 MKFVILGTLPGLNEYISAERSNRHSAAKMKKQMEYAIGMIARSQHRKAHFKRPVVMRYLW 60 Query: 62 HMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 D RRRDLDN+ K DA AG D Q +V + K R+E+ I E Sbjct: 61 VEKD-RRRDLDNVAFAKKFIQDAFVHAGILEGDGQRHIVGFTDSFSVDHKNPRVEIEIEE 119 Query: 117 MGNE 120 + ++ Sbjct: 120 ISHD 123 >UniRef50_Q87BV3 Uncharacterized protein PD_1345 n=13 Tax=Xylella fastidiosa RepID=Y1345_XYLFT Length = 153 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 2 NTYSITLPWP---PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 S+TLPWP S N H R+ + + Y + +AR + L + + + + Sbjct: 17 QMQSLTLPWPSKDLSPNAR-VHWTRRSKAVKQARGYAEVMARRAGWSGLSLPVEGRLDLW 75 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 I + P R D DN+ K D + A +DD + V + +++ V G++ +TIT Sbjct: 76 ISFYPPTRCLPDDDNMLARFKPYRDGIADA-LGIDDRRFVSHPLIEDEVRHAGQVVITIT 134 Query: 116 EMGNE 120 + + Sbjct: 135 GITQQ 139 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 25/136 (18%) Query: 4 YSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 IT+P P R R T+ E + Y VARI K ++ + +P+++RI Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKVITYTPPENKKYEKEVARIYKQSIGVLYTDIPLRVRI 60 Query: 60 ECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 P ++ DLDN+ K D L + DD QV + Sbjct: 61 LAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLNGVA-YTDDKQVTSLEIE 119 Query: 101 KMPVTKGGRLELTITE 116 K+ + + + I E Sbjct: 120 KVYSDE-PCVVVYIAE 134 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 82.6 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 22/135 (16%) Query: 3 TYSITLPWPPSNNRYYRHNR--GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 S +P P + + +R GR ++ V I L PV IRIE Sbjct: 1 MVSFVIPGKPFAKQRHNFSRATGRAFTPKATVSFESTVRDIALPKFP-RPLEGPVSIRIE 59 Query: 61 CHM-----------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 P ++ DLDN++K+ D L + F DD+QV K Sbjct: 60 ATFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRIAF-ADDSQVARVVKEKRW 118 Query: 104 VTKGGRLELTITEMG 118 + + + +G Sbjct: 119 G-PVAQTVVVVEPLG 132 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 1 MNTYSITLPWPPSN---NRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M + + + P S N R + + + L +++ Sbjct: 1 MIEFFMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQV 60 Query: 58 RIECHMPDRRR----------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 + P + + D DNL KA +D +T+ G+W DD Q+ K + Sbjct: 61 VTKWCFPIKAKHHDGEPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWAQR- 119 Query: 108 GRLELTITEMG 118 + + I E+ Sbjct: 120 PGIYVKIEEVK 130 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 24/141 (17%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M+TY+ + P R +R + + A+ + Y+ V I + ++ Sbjct: 1 MSTYTAVVLGDPVAQGRPRFSRQGGFVKAYDPAKSRDYKSYVRMIAAQHAPVTPVEGAIE 60 Query: 57 IRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + + + + D+ N+ K DAL ++ DD+Q+V Y Sbjct: 61 FSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKGV-WYKDDSQIVGY 119 Query: 98 RVVKMPVTKGGRLELTITEMG 118 V+ + R+E+ + E+ Sbjct: 120 GVLGKWYDERPRIEIMMRELE 140 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 33/147 (22%) Query: 3 TYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 T+P P + R +R + + A+R V +KN +K+ + Sbjct: 1 MVKFTIPIEPKPQKRPRFSRWSGAYEDKDMMAWRKQVTDYVKNNYEGPYFDDGLKVDVTF 60 Query: 62 HMPD------------------------------RRRRDLDNLQKAAFDALTKAG-FWLD 90 ++ ++ DLDNL+KA +D+++K+ W D Sbjct: 61 YLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLDNLEKAVYDSISKSEVVWTD 120 Query: 91 DAQVVDYRVVKMPVTKGGRLELTITEM 117 D +V++ K+ + R+E+ I E+ Sbjct: 121 DNIIVEHTTRKLY-SPNPRIEVKINEL 146 >UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HN12_CYAP4 Length = 130 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 ++ L P + RH+ ++++ + ++++ + + + + Sbjct: 17 QEITLHLTGPVTPKARPRHHGNQSYLPGRYRQWKEDAIAELSQQYEGEPIPQAI---VTI 73 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLELTITEM 117 + R DLDN+ A DAL +AG +DD + + +P G ++ I+++ Sbjct: 74 EILGSARGDLDNISGAVLDALVQAGVLVDDRISCIPRLEICHVPGKIQG-AKIQISQL 130 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 47/135 (34%), Gaps = 23/135 (17%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSA---EGQAYRDNVARIIKNAMLDIGL-AMPVKIRIEC 61 ITL P R V+ AY+D + + M L P +++ Sbjct: 2 ITLNIPVEPMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQLYTGPTVVKVLF 61 Query: 62 HMPDRR-----------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 MP + + D+DNL K FDAL K W DD QV K+ Sbjct: 62 SMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTA-WHDDNQVFMVIGAKVYG 120 Query: 105 TKGGRLELTITEMGN 119 K +E+ I + Sbjct: 121 -KEPGIEVQIMGLAE 134 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 80.7 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 27/145 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLD--IGLAMP 54 M T+P P + + +R +T+ E +Y + V A Sbjct: 5 MKQIRFTIPGQPFGKQRPKFSRAGAYVKTYTPKETTSYENLVKLFYNEAAKGKMFPEGAM 64 Query: 55 VKIRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + +RI + + + D DN+ K D+L + DD+ VV Sbjct: 65 LDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIVCDSLNLVA-YHDDSAVV 123 Query: 96 DYRVVKMPVTKGGRLELTITEMGNE 120 D +V K ++ R+++ I +G + Sbjct: 124 DAQVRKFY-SETPRIDVMIKVVGPD 147 >UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium RepID=A6LQD4_CLOB8 Length = 232 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 15 NRYYRHNRGRTHVS-------AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD-R 66 N + GR + Y +A + +N DI + + + + + Sbjct: 18 NFKLHNLNGRAILPHSSGKYHDRYALYEQEIALLARNQNPDIVFSESLIALLRVYYKSEK 77 Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 R D N+ K+ FD + K+G ++DAQ+ + + R EL + Sbjct: 78 RHPDTINITKSIFDGIEKSGLIINDAQITKIFTEEYYDKENPRFELEL 125 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 34/152 (22%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRT--------HVSAEGQAYRDNVARIIKNAMLDIGLAM 53 + P R R + + ++ +A K+ Sbjct: 3 KPIVFFVSGDPKGQPRPRAFARRVGNKFVARVFDAGTAEGWKSRIAVAAKSLTPAQPYTD 62 Query: 54 PVKIRIECHMPDRR----------------------RRDLDNLQKAAFDALTKA-GFWLD 90 PV++R+ P + + D DNL KA DA+T+ G+W D Sbjct: 63 PVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKAVLDAMTQLGGWWGD 122 Query: 91 DAQVVDYRVVKMPVTK---GGRLELTITEMGN 119 D QV V K V+ + +++++ Sbjct: 123 DQQVASLAVCKSYVSTIQLHPGVNISVSQCNQ 154 >UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TAJ4_RICCO Length = 499 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%) Query: 25 THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK 84 +++ G +R VA I+ + + + M DRR DLDN KA DAL Sbjct: 1 MYITKSGVDFRKQVAEIVAERSALKFGTSRLFMAVRLCMRDRRASDLDNRMKALCDALEH 60 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGG 108 AG + DD Q+ + +V+ P+ KGG Sbjct: 61 AGVFDDDEQIDELVIVRGPIVKGG 84 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 18 YRHNRGRTHVSAE--GQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ 75 + + + ++ + + Y N + ++R + + +R DLDN Sbjct: 23 PKTRKTHSSLAKQEVLKEYEKNFYIQCPE--RGRMIEGYFRLRAKVYYNSKR-PDLDNSL 79 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 K D L G +D Q V + K K R+E IT + Sbjct: 80 KILLDCLQMTGTIKNDRQCVYIEIEKFVDRKEPRVEYEITPVE 122 >UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA family protein n=2 Tax=Bacteroides RepID=C9KYW6_9BACE Length = 147 Score = 79.9 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 22 RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDA 81 + R + + Y + K ++ K+ I + R DLDN K D Sbjct: 26 QKRIIKNDRIREYEKSFCLQCKK-YRGKRISGRFKLFIRVWHGN-IRFDLDNALKTILDC 83 Query: 82 LTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 L +D+ + K + R+E + E+ + Sbjct: 84 LQMVEAITNDSLCFEIHAEKRIDRRNPRVEFGMEEINEQ 122 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 44/148 (29%), Gaps = 30/148 (20%) Query: 1 MNT-YSITLPWPPSNNRYYRHNR-----GRTHVSAEG----QAYRDNVARIIKNAMLDIG 50 MN S +P P+ R R + + +R V Sbjct: 1 MNQRLSFFIPGVPAPGGSKRFVGIGKKTKRAILVDAAGQKNKDWRTAVGWAAHEHFKGEV 60 Query: 51 LAMPVKIRIECHMPDRR------------------RRDLDNLQKAAFDALTKAGFWLDDA 92 L +++ MP + R D L ++ DALT W DDA Sbjct: 61 LTGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDALTGI-VWRDDA 119 Query: 93 QVVDYRVVKMPVTKG-GRLELTITEMGN 119 QVVD K + I E+ + Sbjct: 120 QVVDGGQKKRYADSCSAGCLVEIEELAS 147 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 21/133 (15%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM 63 + + R RG + Y V + L +K+ I + Sbjct: 1 MKVVVTGKIRGKARPRVCRGHAFTPKDTVQYEKLVRDCYQEQ-DGRYLEGSIKVLIVAYY 59 Query: 64 PD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 R++ D DN+ K D+L + DDA V D+RV+K Sbjct: 60 KIPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLNGIA-YKDDAYVADFRVIKEYT 118 Query: 105 TKGGRLELTITEM 117 + R+E ++E+ Sbjct: 119 EELERVEFELSEV 131 >UniRef50_Q9PCT9 Uncharacterized protein XF_1666 n=1 Tax=Xylella fastidiosa RepID=Y1666_XYLFA Length = 137 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 2 NTYSITLPWP---PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 S+TLPWP S N H R+ + + Y + +AR L + + + + Sbjct: 17 QMQSLTLPWPSKDLSPNAR-VHWTRRSKAVKQARGYAEIMARRAGWGGLSLPVEGRLDLW 75 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 I + P RR D DN+ K D + A +DD + V + +V+ GG + + IT Sbjct: 76 ISFYPPTRRLPDDDNMLARFKPYRDGIADA-LGIDDRRFVSHPLVEDDRRTGGEVVVRIT 134 Query: 116 EMG 118 + Sbjct: 135 GIE 137 >UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KYT0_METC4 Length = 187 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + + I P PPS N Y + G + +A+R A +I +A P + I Sbjct: 32 VPSVEIRFPLPPSTNSLYFNVAGGRRKTPRYRAWRQQAALLIDVQRPG-RMAGPCDVTIY 90 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 D DN K DA AG DD Q R + + + +T Sbjct: 91 LPPFS---GDADNRIKPCLDAAVAAGVLADDGQRYVRRALVEVDRAATEVRMVLT 142 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Query: 20 HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD----------RRRR 69 + + + + RD ++ + L P+++ ++ P + Sbjct: 31 NGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPIRLTVKWLFPKIKGSTNGQYKTTKP 90 Query: 70 DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 D DNLQK D +T+ GFW DDAQV + K G + + + E+ Sbjct: 91 DTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWADTVG-IYVKVEEL 137 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 20/112 (17%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC-- 61 Y +T+P R GRT A+ ++ R + L P+ + + Sbjct: 40 YRLTIPGLLRAKGRPRFGNGRTFTYAKTVQAEKHIQRHAIEQIGKPCLTGPLHVSLMINI 99 Query: 62 -HMPD----------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 P R D+DN K A DAL W DDAQ+VD Sbjct: 100 APPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNGIA-WKDDAQIVD 150 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 43/157 (27%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARII----KNAMLDIGLA 52 +N +P P + R R RT+ A+ Y D V K + + Sbjct: 3 VNCIKFVIPGEPQSKERPRTVRRAGGVRTYTPAKTHRYEDIVRYFAVYARKEHKISEPIN 62 Query: 53 MPVKIRIECHMPDRR-------------------RRDLDNLQKAAFDALT---------- 83 + I+ + + + D DN+ K FD + Sbjct: 63 SQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMNPKMKLNKALH 122 Query: 84 -----KAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + GF+ DD +V + V K +E+T+T Sbjct: 123 KKMVLQDGFYEDDKLIVTHSVEKWYSM-HPHVEVTVT 158 >UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RH80_ANAPD Length = 125 Score = 78.3 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 4/105 (3%) Query: 18 YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKA 77 R + S + Y + R I + P+ ++ + + R DL NL A Sbjct: 22 PRTGQPFLTQSKRYKDYARDCGRQITGKYKK-NIDYPINLKCVYYRKTKHRVDLTNLLAA 80 Query: 78 AFDALTKAGFWLDDAQ--VVDYRVVKM-PVTKGGRLELTITEMGN 119 D L+ G DD VV + ++ + R+E+ I +M Sbjct: 81 TCDILSDCGVIKDDNCKIVVSHDGSRVKYDKECPRVEIEIEKMNE 125 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 78.3 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 22/114 (19%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR--------------- 67 G + + + Y+ +V + + L+ P+++ +E + ++ Sbjct: 2 GHAYDPTKSRNYKQHVKSVASE-LNIEPLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKV 60 Query: 68 ----RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + D+DN K+ DALT W DD Q+V+ V K + R+E+ E+ Sbjct: 61 RPTVKPDVDNYYKSVSDALTGI-LWEDDNQIVEIHVGKWYSDQ-PRVEIEAEEI 112 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 25/124 (20%) Query: 13 SNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP------ 64 S +R+ +T++ ++ I+ M + L +KI ++ + P Sbjct: 17 SPRPRFRNTGRFVQTYMPTAYTNHK----AYIQGQMPKLNLERALKIELDFYFPLLKSWS 72 Query: 65 -----------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + D+DNL K DA W DD Q+ + K + ++ + Sbjct: 73 KKKKSEMVGQYKVTKPDIDNLIKTVLDACNGH-VWKDDNQITEITSSKRYGLE-PKIIMR 130 Query: 114 ITEM 117 + E+ Sbjct: 131 VEEV 134 >UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C6946 Length = 115 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Query: 30 EGQAYRDNVARIIKNA-----MLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK 84 + + Y + V+ A + + I+ + PD+R RD+ N K+ D + K Sbjct: 9 KFREYEELVSWSSVKAISTSKYKNNKFNENLTTVIKLYFPDKRNRDIHNYPKSICDGIEK 68 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +G +D + ++ + R+E+ + Sbjct: 69 SGIIKNDKLLKPVVIMDFIDKENPRVEIELYPASE 103 >UniRef50_UPI0001C369A4 prophage Lp2 protein 24 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C369A4 Length = 165 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%) Query: 14 NNRYYRHNRGRTHVSAEGQ-AYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLD 72 N Y NR H + + + V I+ + + + PV ++ + P++RR D D Sbjct: 55 LNDYTAANRTNPHKGGKMKKDNEETVIWAIRQQLRRLHIEKPVFLKFSWYEPNKRR-DHD 113 Query: 73 NLQ----KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 N+ K DAL K G DD V+ + R+E+ I E Sbjct: 114 NVSSFGRKVIQDALVKCGVLKDDGWDYVIGFTDQFFCDRNEPRIEVLIEE 163 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%) Query: 13 SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP-------- 64 N + + +A R + + + D PV++ ++ P Sbjct: 27 VVNGKPVF-----YEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLMVKWCFPVTGKHKNG 81 Query: 65 --DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 + D DNLQK D +T FW DDA V V K + + I E+ Sbjct: 82 EYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV-PGIFIAIEELS 136 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 25/124 (20%) Query: 13 SNNRYYRHNRG--RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR---- 66 S + T++ + ++ ++N M + L +KI +E + Sbjct: 21 SPRPRFSTKGRYAHTYMPTKYTEHKK----YLQNQMPKLNLENALKIELEFYFTPPKSWS 76 Query: 67 -------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + D+DNL K DA W DD Q+ + K + ++ + Sbjct: 77 KKKKTQAIGQLKVTKPDIDNLMKTVLDACNNY-LWKDDNQIAEITSSKRYGIE-PKIIIR 134 Query: 114 ITEM 117 I E+ Sbjct: 135 IEEI 138 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 2/93 (2%) Query: 14 NNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIECHMPDRRRRDLD 72 R G + + + PV++ E M R R DLD Sbjct: 2 PKGRPRVYNGHAMTPKRTVRAEERLFAEFRLKYPQAKPYQCPVRLEAEFWMSHRGRPDLD 61 Query: 73 NLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 NL K D+L ++DDAQVV+ K Sbjct: 62 NLLKLVLDSLNGVA-YVDDAQVVESHACKRMPD 93 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 21/125 (16%) Query: 10 WPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR-- 67 R RG + Y V K L +K I + + Sbjct: 6 GKIRGKARPRVCRGHAFTPKDTIEYEKLVRECYKKQ-DGRYLEGAIKALIIAYYKIPKSY 64 Query: 68 -----------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 + D DN+ K D+L + DD+Q++D R+ K + R+ Sbjct: 65 TKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVA-YKDDSQIIDLRIKKEYTEELERV 123 Query: 111 ELTIT 115 E Sbjct: 124 EFEFR 128 >UniRef50_A9W5I1 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens PA1 RepID=A9W5I1_METEP Length = 155 Score = 75.3 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 ++ +I LP PPS N + H GR S A+ +V + + + + Sbjct: 21 VDEVTILLPVPPSVNALHDHAPGRPVRSKAYSAWIHDVGWRLIEQRPG-RVPGAYILLLA 79 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + DLDNL KA D L G +D + + Sbjct: 80 V-PEAETKADLDNLSKATRDLLQAHGLIDNDRKARREVLDWH 120 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRR-----DLDNLQKA 77 G T++ A + Y+ +A + + V + C + + D+DN K Sbjct: 5 GSTYMPAAYKVYQKAIAAALPKLDSQYTGELEVILEFVCKPIAKSKFTTPMGDVDNFAKG 64 Query: 78 AFDALTKAGFWLDDAQVVDYRVVKMPVT--KGGRLELTITEM 117 D LT G+W DD Q++ V K + + + I E+ Sbjct: 65 VMDTLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 36/149 (24%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIE 60 + T+ PP R R T+ A+ Y D V N+ P+ ++I Sbjct: 1 MRVNFTIEGPPIGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKGIFDKDEPLDVKIM 60 Query: 61 CHMPDR-------------------RRRDLDNLQKAAFDALT---------------KAG 86 + ++ D DN+ K D + G Sbjct: 61 AYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGMNPKMRRDKRLHKMVEVMRG 120 Query: 87 FWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + DD QV V K + R+++ I Sbjct: 121 VYHDDKQVTTLLVKKRYAER-ARVDVRIK 148 >UniRef50_A6F0M3 Putative uncharacterized protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F0M3_9ALTE Length = 141 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 23/132 (17%) Query: 2 NTYSITLPWP-PSNNRYYRHNRGRTHVSAEGQA---YRDNVARIIKNAMLDIGLA----- 52 I LPWP P+ N R H S + +A YR A+ G Sbjct: 5 EKLEILLPWPLPALNP-----NSRGHWSKKARAADMYRYTCKLASIEAIQKSGHDTGALQ 59 Query: 53 ------MPVKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 + + ++ + P+RR RD DN+ K+ D L A D + + Sbjct: 60 DLVKAGGDIHVFLDFYPPNRRARDDDNIIAAFKSGRDGLADALNIDDRHFRTHPFLHRDE 119 Query: 104 VTKGGRLELTIT 115 V G++ + +T Sbjct: 120 VVHMGQVRVVVT 131 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 22/123 (17%) Query: 8 LPWP-----PSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAML-DIGLAMPVKI 57 LP P P R S + + +RD V I A+ LA PV Sbjct: 87 LPGPQGSKTPIGYGRSRTTGKTIPLMRESSTKVKPWRDKVQAAITAALHTSAPLAGPVYA 146 Query: 58 RIECHMPDRRR------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 I MP R D+D L+++ +DA+TKA W DD V++ K+ Sbjct: 147 HITFTMPKPVRAPKRRRTYPAVTPDIDKLERSTYDAITKAAAWKDDGCVIESHARKVYPD 206 Query: 106 KGG 108 + Sbjct: 207 EHP 209 >UniRef50_Q88UN4 Prophage Lp2 protein 24 n=2 Tax=Lactobacillus plantarum RepID=Q88UN4_LACPL Length = 126 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 10/124 (8%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEG-QAYRDNVARIIKNAM-LDIGLAMPVKIR 58 MN I PS N Y + R + +A + Y + + + + + P K++ Sbjct: 1 MNKVVIKGEL-PSLNEYIKAERANRYAAANLKKRYTALCSVYARASRNSGVEFSWPCKLK 59 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLEL- 112 + + R+ D DN+ K D KAG +D + ++ + R+E+ Sbjct: 60 FTWYTKNNRK-DADNIAFAKKFVLDGFMKAGLLGNDNRKHITGFQDEFAVDKRNPRVEID 118 Query: 113 TITE 116 ITE Sbjct: 119 EITE 122 >UniRef50_Q1GG05 Putative uncharacterized protein n=2 Tax=Ruegeria sp. TM1040 RepID=Q1GG05_SILST Length = 118 Score = 73.3 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M + +I L WP + + + V A + + A + V + Sbjct: 1 MKSTTIRLSWPR--RALWDNEKASHMVRAAAKRTQRKEAWALALEAKWPRDPAAV-LTFR 57 Query: 61 CHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 PDRRRRD NL KAA D + A D + PV KGG + + I Sbjct: 58 FCPPDRRRRDTHNLPATMKAAIDGIADAMKVDDVGFRCVFPTEFGPVEKGGAVYIEI 114 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 71.4 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 29/143 (20%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG------RTHVSAEGQAYRDNVARIIKNAMLDIGLA-- 52 M + + +P P + R ++ + Y + + +N L Sbjct: 12 MQSVTFQVPGKPQGKARAKTVRNKSTGNIHSYTPEKDMLYENYIKAQFQNRANGFYLERG 71 Query: 53 MPVKIRI--ECHMPDR-----------------RRRDLDNLQKAAFDALTKAGFWLDDAQ 93 PV +RI P ++ D+DN+ K DAL + DD Q Sbjct: 72 KPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIVKVVADALNGVA-YHDDTQ 130 Query: 94 VVDYRVVKMPVTKGGRLELTITE 116 + K G L++T+ E Sbjct: 131 IAMVIAAKTYSAMEG-LDITVEE 152 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 20/130 (15%) Query: 9 PWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAM--LDIGLAMPVKIRI------ 59 P R R GRT+ + + + PV + I Sbjct: 17 PAEIVGKGRPRFTRSGRTYTPRKTKRAELAIRDEFLRVSGDRWAKFRGPVSVHIIYGREL 76 Query: 60 -------ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG---R 109 D + DLDN K DAL F +DD+QVV+ + K GG Sbjct: 77 AKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAF-MDDSQVVNMTIAKSARRPGGTGNL 135 Query: 110 LELTITEMGN 119 L++ I+ Sbjct: 136 LQIEISYYNE 145 >UniRef50_B3WDE7 Putative uncharacterized protein n=3 Tax=Lactobacillus casei group RepID=B3WDE7_LACCB Length = 121 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 3 TYSITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDN----VARIIKNAMLDIGLAMPVKI 57 I +P P + N+Y + RG A+ + R N + P+ Sbjct: 1 MNRIIIPLPLMTLNQYIKIERGNMFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLS- 59 Query: 58 RIECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLEL 112 + + D+R D DN+ K FD + KA F +D +V+ R R+E+ Sbjct: 60 -FDWYWYDKRT-DPDNIAFQHKFIFDGMQKAEFLENDNWDHIVELRDRFFIDKANPRVEV 117 Query: 113 T 113 Sbjct: 118 E 118 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%) Query: 18 YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM-------------P 64 ++ + + A PV +RI+ P Sbjct: 29 WKLKGCHVYTPQATIDEER----ALGQAYKGPRHEGPVSVRIDVFRVLPGSRPKRVLGEP 84 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK--GGRLELTITEMG 118 D D+DN+ KA D L + DD QVV+ V K + G + +++ + Sbjct: 85 DTMTPDIDNIAKAVLDGLNGIA-YDDDKQVVELHVYKHDRERRVGDSVRISVEGVT 139 >UniRef50_B6W9X0 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W9X0_9FIRM Length = 128 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Query: 19 RHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAA 78 R R S E Y++ +K + L+ P+ ++ +MP R DL NL +A Sbjct: 25 RGKRKWIVPSKEFINYQNICLYQVKK-KDKLQLSTPINLKCLYYMPTNHRVDLVNLLEAT 83 Query: 79 FDALTKAGFWLDDAQ--VVDYRVVKM-PVTKGGRLELTITEMGNE 120 D L +A DD + + ++ R+E+ + E +E Sbjct: 84 CDILVEAHVIGDDNSKIIKSHDGSRVLYDKDSPRVEIYLEEFIDE 128 >UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFT5_9NEIS Length = 145 Score = 70.6 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 12/121 (9%) Query: 1 MNTYSITLPWP-PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M I LP+P P +H R V R + + G ++I Sbjct: 25 MKQNKIILPYPNPVLMPNRKHGRHWASVQQAKVKARQEAFLLSGSLNYTGGG-----LKI 79 Query: 60 ECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKM--PVTKGGRLELTI 114 + PD R+RDLDNL K A D + KA +DDAQ + K+ K R+E+ + Sbjct: 80 TFYTPDARKRDLDNLLAAMKPALDGMAKA-IGVDDAQFRPLLIDKVKAESRKDARVEIEL 138 Query: 115 T 115 Sbjct: 139 M 139 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 24/123 (19%) Query: 12 PSNNRYYRHNRG-RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM------- 63 P + R + G T++ A ++ VA + + + + P+++ +E + Sbjct: 20 PKGSSRPRFSGGGHTYMPAPYVKHKKFVA----DQLPHLMIDKPIRLTVEFYFKPSKSWP 75 Query: 64 ----------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 P + D+DNL K DA W+DD + + R K + R LT Sbjct: 76 KYKKEACIGNPHTIKPDIDNLLKTILDAGNNL-LWVDDTLIYEIRTFKKYA-ETARTVLT 133 Query: 114 ITE 116 I E Sbjct: 134 IIE 136 >UniRef50_Q5YSM1 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YSM1_NOCFA Length = 144 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 22/136 (16%) Query: 1 MNTYSITLPW---PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M I LPW P S N + +A+ + R+ V + A L +A + Sbjct: 1 MTVVRIDLPWTSPPLSMNDRGYTHGAAMAKAAKTREIRETVIALATQAKLPRLVAHA-AV 59 Query: 58 RIECHMPDRRRRDLDNL---QKAAFDALT-----------KAGFWLDDA----QVVDYRV 99 ++ D RRRD DNL K DALT G LDD + + Sbjct: 60 QLHYQPRDNRRRDTDNLIATLKPIADALTVSRASKRGTVPGYGLVLDDTPQWMSKPEPLI 119 Query: 100 VKMPVTKGGRLELTIT 115 +GGR+ + IT Sbjct: 120 HPAVKGEGGRMWIEIT 135 >UniRef50_Q2KZ60 Phage-related protein n=2 Tax=Bordetella avium 197N RepID=Q2KZ60_BORA1 Length = 123 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 8/123 (6%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP---VKIRI 59 S+ LPWPP +S + YR A+ V+I Sbjct: 1 MISLLLPWPPKELS-PNFRGHWASISRAKKVYRIAACLTTMRALRHAERFDRLGGVRITY 59 Query: 60 ECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 E P R D DNL KAA D ++ A ++D V KGG + +TI Sbjct: 60 EFCPPTARAYDRDNLAARMKAATDGISDA-LGMNDRGFHFAPVAIGSKEKGGLVRVTIES 118 Query: 117 MGN 119 + Sbjct: 119 LKE 121 >UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease n=1 Tax=Arsenophonus nasoniae RepID=D2U459_9ENTR Length = 105 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 30/66 (45%) Query: 51 LAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 + V + + P RRDLDN KA D+LT AG W DDAQV V GG Sbjct: 1 MTTAVSLSLTLFPPTDHRRDLDNFVKAKQDSLTYAGIWQDDAQVKRLTVEWGAKIAGGSA 60 Query: 111 ELTITE 116 IT Sbjct: 61 LAIITP 66 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR----------RRDLDNLQ 75 + Y + +P+K+ + ++ R DLDNL Sbjct: 31 YDRRGTNNYSLKAQLMKNKPKECFEKNVPLKLSVTFFYAIKQKKRWWQWKTSRPDLDNLM 90 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 K D +TK ++ DD+Q+V K+ K R+E+ ITE+ Sbjct: 91 KNLQDYMTKLRYYSDDSQIVWLEAKKVNDEKN-RIEIEITEV 131 >UniRef50_Q4EJG1 Gp63 n=7 Tax=root RepID=Q4EJG1_LISMO Length = 134 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%) Query: 2 NTYSITLPWPPS-NNRYYRHNRGRTHVSAEGQAYRDNVAR-IIKNAM-LDIGLAMPVKIR 58 + I +P P + N Y RG +A+ + + +K AM + + P +I+ Sbjct: 11 TSNKIIIPLPLTDLNTYINKERGHRQAAAKVKKQMTYICASYVKMAMNHGVTFSTPCRIK 70 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKGG-RLEL 112 +P++R+ D DN+ K FD + +AGF +D + + + R+ + Sbjct: 71 FTWIIPNKRK-DPDNIAFAKKFIFDGMMQAGFIENDNLNFIEGFSDHFIIDKGEESRVIV 129 Query: 113 TIT 115 + Sbjct: 130 EVE 132 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 68.7 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 51/147 (34%), Gaps = 31/147 (21%) Query: 2 NTYSITLPWPPSNNRYYR----HNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGL-A 52 T I LP P +R H G +H + +AY + M L Sbjct: 3 ETLIIRLPGAPRGKGRHRAQLVHRGGVARIHSHPDQKTEAYESALRLAAGAVMRGRALLT 62 Query: 53 MPVKIRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQ 93 P+++RI MP + D DN+ K DAL W DDA Sbjct: 63 GPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSDALNHV-VWADDAS 120 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 VVD V K + L + +T + + Sbjct: 121 VVDGLVRKFYG-ETPELVIQVTALEPQ 146 >UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovirales RepID=A8HP85_9CAUD Length = 109 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M +I P S N + +G+ + + + Y ++ + +K+ + Sbjct: 1 MIKLNIK---PLSINCAF---QGKRFKTKKYKQYEQECLLLLPRKVEIP--EGKLKVSLF 52 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGR-LELTITEM 117 + D DN K D L K + +D ++ +Y + K+ V KG +E I + Sbjct: 53 FGFSSKLA-DADNPVKCFIDILQK-KYGFNDNKIYEYSISKVDVKKGEEFIEFKIESL 108 >UniRef50_UPI00004C2387 hypothetical protein SpyoM01000040 n=1 Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2387 Length = 132 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 12/115 (10%) Query: 12 PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDL 71 S+N + + + R P K+ + P +RR D Sbjct: 17 LSSNDRLHFRKSASI----TKGLRQLAKLKSNGLTKKHTKNNPCKVIVTVFTPTKRRFDP 72 Query: 72 DNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP-----VTKGGRLELTITEMG 118 N+ KA D T AG W DD + + V R+ + I EM Sbjct: 73 PNIYPTIKAILDGFTDAGVWDDDNHEIIKSLTFRYGGLSNVKGKYRIAIEILEME 127 >UniRef50_Q9CIB4 Prophage pi1 protein 15 n=4 Tax=root RepID=Q9CIB4_LACLA Length = 158 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 8/112 (7%) Query: 16 RYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ 75 N + + + + + + P R + D N + Sbjct: 47 SRIAANNTKQRLRRIACRTAHEWLDQSEEVFEQFHEKHRCDVFVVIYPPKRFKYDPPNYE 106 Query: 76 ---KAAFDALTKAGFWLDDAQVVDYRVVKMP-----VTKGGRLELTITEMGN 119 KA D LT AG W DD V R TK ++EL + E+ Sbjct: 107 PTSKALIDGLTDAGIWNDDNYNVIRRTSFEHGGLSGDTKTWKVELVVKELTE 158 >UniRef50_Q6AC63 Phage-related protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AC63_LEIXX Length = 127 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 21/122 (17%) Query: 5 SITLPW---PPSNNRY--YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 SI +P P S N +R + +R+ A + + Sbjct: 10 SILIPLARDPLSLNLRLHWRTVAKH------TKIWREFAATQAAR----FPHLGCCTVTL 59 Query: 60 ECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDA-QVVDYRVVKMPVTK--GGRLELT 113 H+ DRRRRD DNL KA D L AG LDD ++D + + +T Sbjct: 60 TWHVLDRRRRDADNLFRLCKALCDGLVDAGVTLDDTPHLMDKHCRILVEDRRLHPSAWMT 119 Query: 114 IT 115 +T Sbjct: 120 LT 121 >UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV9_STAA0 Length = 197 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 17/130 (13%) Query: 5 SITLPWPPSNNRYYR------HNRGRTHVSAEGQAYRDNVARIIKNAML---------DI 49 ++LP P S N+ Y G+ +S G+ R+++ ++ M + Sbjct: 6 RLSLPLPTSLNKLYVQQFSGGRFTGKKILSKAGKENREDIMINVERQMSLPVNIDWDYEY 65 Query: 50 GLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK-GG 108 + + IE ++ R DLDN K D++ +G D+ + V R ++ + Sbjct: 66 TKDHYIYMDIEAYV-TRVNVDLDNTLKTLNDSIEASGLVFDNDKKVVPRFNRVYIEPSNP 124 Query: 109 RLELTITEMG 118 R+ELT T+ G Sbjct: 125 RVELTFTQTG 134 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 1 MNTYSITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI--GLAMPVKI 57 M + + PP S R+ Q ++ V + +K+ Sbjct: 1 MIPFEFIVEGPPVSLQTKNRN---------RLQEWKARVRSAAELYWPTEDSPSDKQLKL 51 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 I + + D+DN+ K DAL + DD Q++D K + ++ Sbjct: 52 SITYYYEN-TSPDVDNIIKPIQDALVGL-VYNDDDQIIDTSCGKRDINGSFKIR 103 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 21/135 (15%) Query: 4 YSITLPW---PPSNNRYYRHNRGRTHV--SAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 + +P P + YR + V S + + +RD V+++ + + V + Sbjct: 8 LTFFVPGIAAPQGSKNAYRRGQKIVLVESSKKVKPWRDTVSQVARFVC-KRPIDGAVTVA 66 Query: 59 IECHMPDRR------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK 106 + MP + + DLD + +A DALT + DD+Q+V K Sbjct: 67 VHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIA-YADDSQIVRLTGSKRRAAP 125 Query: 107 GGRL--ELTITEMGN 119 G + +TIT Sbjct: 126 GEKTGAHITITPFME 140 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC- 61 + PP + + R R + ++ V + + A I ++ Sbjct: 4 RLEFIVDGPPVSQQTRRRER--------LRDWKRVVRQEAEKYWSSGQKATTGLIMLQIT 55 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 + D D+DN+ K DA+ ++DD QV D V K ++ ++E Sbjct: 56 YFYDSVAIDVDNIVKPIQDAIIGL-VYIDDDQVTDVLVRKRDLSGNFKVE 104 >UniRef50_A5MC55 Putative uncharacterized protein n=2 Tax=Streptococcus RepID=A5MC55_STRPN Length = 137 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 16/117 (13%) Query: 15 NRYYRHNRGRTHVSAEGQAYRDNVARIIKNAML-----DIGLAMPVKIRIECHMPDRRRR 69 N ++ + + R A N + P K+++ + P R+ Sbjct: 16 NDRPHFHQK----AKITKFLRQLAAYEGNNVLRDYFGLPYREDKPCKVKVRIYPPTNRKY 71 Query: 70 DLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG----RLELTITEMGN 119 D N KA FD LT A W DD V M K G R+EL I E Sbjct: 72 DPPNWSPTSKALFDGLTDAKIWTDDNYNVIVSTEFMHGGKSGNKNYRIELEIYEYHE 128 >UniRef50_C5B0R6 Putative uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=C5B0R6_METEA Length = 145 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 4/107 (3%) Query: 2 NTYSITLPWPPSNNR-YYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + + LP P S N + G +S A+ + + +A ++ Sbjct: 23 DRVVLRLPVPVSVNDMHAPRKGGGVRISDAYAAWMSDAGWRLTAQRPG-RIAGRY--TLD 79 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 +P DLDN K D L G +D + T Sbjct: 80 LGLPRESGLDLDNAVKVTSDLLQLHGVIRNDRNAERIGIWWQDETPE 126 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 21/117 (17%) Query: 21 NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFD 80 R + S + + + + + I + + + PV++ ++ R DLD + D Sbjct: 35 TRPMSIKSDKARNFERDALKQIPPSAR-VRMTGPVRVILKIFYATER-PDLD--ESVILD 90 Query: 81 ALTK-----------------AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 + G + +D QV V R E+ I + + Sbjct: 91 VMQDRFRTVTVKGIERRELVYHGVYRNDRQVRQKFVFHGIDRVNPRAEVVIESLQEQ 147 >UniRef50_Q9AZ79 RUS n=6 Tax=root RepID=Q9AZ79_9CAUD Length = 139 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 16/122 (13%) Query: 12 PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM------LDIGL---AMPVKIRIECH 62 P + + ++ R H + + ++ + L + + Sbjct: 18 PKSKKLILNSNDRMHFHQKAKIIQELKRITFNQVRNPLNSLKKLPLFDSTRTCSVTLTVF 77 Query: 63 MPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP----VTKGGRLELTIT 115 P +RR D DNL KA D T++G W DD V TK RLE+ I Sbjct: 78 TPTKRRSDPDNLQPTLKAIMDGFTESGLWSDDNHEVVKFTKYQYGGLSGTKTYRLEVDIE 137 Query: 116 EM 117 E+ Sbjct: 138 EV 139 >UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3P4_ACIBC Length = 229 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 18/129 (13%) Query: 2 NTYSITLPWPPSNNRYYRHN-----RGRTHVSAEGQAYRDNVARI---IKNAMLDIGLAM 53 +I LP+ S N +R + R +S + Y+D V + + A+ + Sbjct: 76 QYITIKLPYGLSANEIWRATIDQNGKQRNSLSVGAKKYKDKVQKQYGPMFRALKLKAIDQ 135 Query: 54 PVKIRIECHMPDRRR---------RDLDNLQKAAFDALTKAG-FWLDDAQVVDYRVVKMP 103 +IR+ P + R D+DN K D++ G + DD + ++ Sbjct: 136 LCEIRLIVQPPLKTRSYSAKTYPRFDIDNYPKLLIDSVKGDGLLFKDDNIFISEQIKLAE 195 Query: 104 VTKGGRLEL 112 + G + L Sbjct: 196 PCEEGCVWL 204 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 27 VSAEGQAYRDNVARIIK-NAMLDIGLAMPVKIRIECHM-PDRRRRDLDNLQKAAFDALTK 84 V+ + + ++ + + P ++ IE P D+D + KA DALT Sbjct: 13 VTTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEVARDPASPDHDVDGVAKAVLDALTG 72 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 + DD+QV V ++ + R+ +T M Sbjct: 73 V-VFHDDSQVERLLVTRVEGDR-PRIAVTARPMQE 105 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%) Query: 22 RGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIEC--------HMPDRRRRDLD 72 R T+ E A+ V AM +A+ + I D DLD Sbjct: 106 RHHTYTPKETAAFESAVRMAGAAAMRGREPIAVSLGIDAILAFDGDAGLWPTDNTDGDLD 165 Query: 73 NLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 NL KA DA+ + DD VV+ R+ K+ + L + Sbjct: 166 NLVKAVLDAVNGV-VFKDDRLVVEMRLAKIC-LPSPAIALRVRP 207 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 27 VSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIEC-HMPDRRRRDLDNLQKAAFDALTK 84 ++ + + Y+ + + + I + D DLDNL KA DA+ Sbjct: 31 LTTQAKYYKPLIYEFFRKVWRGSRPAWGEFSVEIGMEFVGDPPWMDLDNLAKALLDAIKG 90 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 F DDAQV V + P + R+ + + ++ Sbjct: 91 YAF-HDDAQVARLLVERRPAERE-RIIIVVRKL 121 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 34/146 (23%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQ-------------AYRDNVARIIKNAML 47 M +++ L PP N+ + R +G ++ Sbjct: 1 MIDFTLDL-IPP--NKTAQQKGERIITPKDGSGQYILHYQKASLADIERAYCTLLVTHRP 57 Query: 48 DIGLAMPVKIRIEC----------------HMPDRRRRDLDNLQKAAFDALTKAGFW-LD 90 LA V+ + P + D DN K D L GF+ D Sbjct: 58 PQPLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCDCLKTVGFFQRD 117 Query: 91 DAQVVDYRVVKMPVTKGGRLELTITE 116 DAQ+ D R++K + + + ++E Sbjct: 118 DAQIFDGRLIKGHGDR-PGIRVRLSE 142 >UniRef50_B1BBK8 Putative uncharacterized protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BBK8_CLOBO Length = 132 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD 65 P PS N R + +++ ++ + +I ++ + + Sbjct: 20 FKTPIHPSIN---VWAINRMTMRNMKSKWKEFGLWLVNKLGYENLHIEKFQITMKNYYGN 76 Query: 66 RRRRDLDN-LQKAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLELTI 114 RRRRD DN K D L ++G +DD + ++ R+E+ + Sbjct: 77 RRRRDNDNQSPKFLLDPLVESGMLVDDDYKHLNPLIIMGDYDKGNPRMEIIV 128 >UniRef50_Q854T6 Gp64 n=2 Tax=unclassified Siphoviridae RepID=Q854T6_9CAUD Length = 127 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 8/94 (8%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + I LPW +R R H +A+ + R+ V D + + Sbjct: 6 KYFRIDLPW----SRPPLTANQRMHWAAKARKTRE-VRTAAALLARDAPRTDRLVATLHY 60 Query: 62 HMPDRRRRDLDNL---QKAAFDALTKAGFWLDDA 92 +RRRD NL KA D L AG DD Sbjct: 61 QPRQQRRRDNHNLWPTVKALVDGLVDAGVVPDDD 94 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 61.4 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%) Query: 27 VSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIEC-HMPDRRRRDLDNLQKAAFDALTK 84 ++ + + Y+ + + + I H+ D DLDNL KA D+L Sbjct: 26 LTTQTKYYKTLLKEFFRKDFPRLRPGYGDYSVHIVMEHLGDAPWMDLDNLAKALLDSLCG 85 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGG 108 + DD QV V + + G Sbjct: 86 -NVFEDDHQVARLLVERRAAERDG 108 >UniRef50_C3PI76 Putative uncharacterized protein n=3 Tax=Corynebacterium RepID=C3PI76_CORA7 Length = 123 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 12/98 (12%) Query: 1 MNTYSITLPW----PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M T+P PP N H + ++ + I+ I A + Sbjct: 1 MQQMMFTIPLTFTKPPLNMNQRLHWAKKAKITKAIR-----TEAFIRCRAARIPRAKHLT 55 Query: 57 IRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDD 91 +++ D RRRD DNL KA D + AG DD Sbjct: 56 VQLHYQPRDNRRRDADNLVPTLKALCDGIVDAGVVPDD 93 >UniRef50_C7R1F1 Endodeoxyribonuclease RusA n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1F1_JONDD Length = 131 Score = 60.6 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 18/123 (14%) Query: 2 NTYSITLPWPPSNNRYYRHNRGR---THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 +P + R + + +A R + ++ + P ++ Sbjct: 1 MKVDFLIP-----QAMILTSNQRLNPHVKAKKTKALRQ----LAESESRGLRGPTPCRVI 51 Query: 59 IECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQ-VVDYRVVK--MPVTKGGRLEL 112 DRRRRD N KA D + AG W DD ++ + + G + + Sbjct: 52 AWLGFQDRRRRDAPNWWPTIKALIDGMVDAGVWEDDNSTIIQGPDHRILDYRCQKGHVYV 111 Query: 113 TIT 115 +I Sbjct: 112 SIE 114 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 15/96 (15%) Query: 28 SAEGQAYRDNVARIIKNAMLD---IGLAMPVKIRIECHM------PDRRR------RDLD 72 SA+ + +RD V+ I A+L L V I M P RRR D+D Sbjct: 56 SAKVKPWRDKVSAAITAAILRGDAKPLHGAVYAEITFTMAKPGSRPKRRRTYPAVSPDID 115 Query: 73 NLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG 108 L++A +DA+T A W DD +V++ K+ + Sbjct: 116 KLERATYDAITTAKAWEDDGRVIENHNRKVYPGEHP 151 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 25/115 (21%) Query: 25 THVSAEGQAYRDNVARIIKNAMLD---------IGLAMPVKIRIECHMPDRR-------- 67 + E + +AM + +PV +RI+ + P + Sbjct: 1 MYTPDETIRNEAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVS 60 Query: 68 -----RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG--GRLELTIT 115 + D DN+ K D + W DD+QV + VVK P +G +++ + Sbjct: 61 EPNTFKPDADNIAKLVMDGMNGV-VWGDDSQVAEVHVVKWPRRRGIEPHMDIQVY 114 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 33/147 (22%) Query: 6 ITLPWPPSNNR-YYRHNRGRTHVSAEG-QAYRDNVARIIKNAMLDIGLAMPVK--IRIEC 61 +T+ P+ R+ G + S+ + +R+ V +A+ + + ++ Sbjct: 8 LTVYGTPAPQGSKNRNRAGALYESSAAVKPWREAVKTAALDALHHDDGWTALSCPVWLDA 67 Query: 62 HMPDRR------------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 RR DLD L + DAL AG DD+ V Sbjct: 68 QFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVRCTQDALKDAGVLADDSVVASL 127 Query: 98 RVVKMPV-----TKGGRLELTITEMGN 119 K+ V + + + + + Sbjct: 128 SASKVYVLWGDALRTPGAVIRVWRLND 154 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 27/136 (19%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSA--EGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + + P R RG A + + + + ++ + +++ + Sbjct: 16 IDVYIEGKPIPMPRPRLGRGIWFNPATRQLKEFSKKLQALLPEDGVVFPRGECLEVNLFF 75 Query: 62 H-----------------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + + + D+DNL K DA+ + DD+QVV Sbjct: 76 YIRRPNSDYDGNKRINALKPGRANPFETVKPDIDNLAKFTLDAMQGI-VFHDDSQVVKLL 134 Query: 99 VVKMPVTKGG-RLELT 113 V K+ +GG R+++ Sbjct: 135 VYKLRGNEGGTRIKVR 150 >UniRef50_A1B8H5 Putative uncharacterized protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B8H5_PARDP Length = 122 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 10/122 (8%) Query: 2 NTYSITLPW----PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 + LPW S N H R R + + D +AR I +++ Sbjct: 1 MILRVKLPWAKTSELSANSRL-HWRKRAKLVKAQRRVTDALAREAGWHKARIPADAELRM 59 Query: 58 RIECHMPDR-RRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + P D DN+ K A DAL A +DD ++ ++ + G + + Sbjct: 60 TLIYCPPSTVTTVDDDNVVTENKGARDALA-AVLRIDDGRIKLQAPIRGDRCRDGAVIVE 118 Query: 114 IT 115 + Sbjct: 119 VE 120 >UniRef50_B1MZE0 dTDP-glucose pyrophosphorylase n=2 Tax=Leuconostoc RepID=B1MZE0_LEUCK Length = 149 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 19/136 (13%) Query: 1 MNTYSI--TLPWPPSNNRYYRHNRGRTHVSAEGQ----AYRDNVARIIKNAMLDIGLAMP 54 M+ ++ + W + N+Y R ++A+ + AY NV + P Sbjct: 16 MDKVTLYPNILWQFTLNKYIEAERKNRFIAAKLKKTATAYARNVFLQAITDNVSFSW--P 73 Query: 55 VKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGF-----WLDDA--QVVDYRVVKMPV 104 K++ + ++PD RR D DN QK FD + KA +D + + Sbjct: 74 TKLKFDWYLPD-RRIDPDNWTFTQKFIFDGMQKANIGKRVFLDNDNVKNIKGFDHDFYVD 132 Query: 105 TKGGRLELTITEMGNE 120 RLE+ E+ +E Sbjct: 133 KVNPRLEIYEMEVVHE 148 >UniRef50_C7Q4H8 Endodeoxyribonuclease RusA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4H8_CATAD Length = 132 Score = 58.7 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 20 HNRGRTHVSAEGQAYRDNVARIIKNAM-LDIGLAMPVKIRIECHMPDRRRRDLDNL---Q 75 + R H + + K+A I ++I+ H D+RRRD N Sbjct: 25 NANDRVHWRTRARITKALREAAAKSARDAHIPPMEQIRIQAVLHPHDKRRRDPHNWYPSY 84 Query: 76 KAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLELTITEMGNE 120 KAA D + AG DD ++ VV + ++ L IT G E Sbjct: 85 KAAIDGIVDAGVIPDDDGKHLISIEVVLGAPVRHTQIALRITPFGVE 131 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 27/139 (19%) Query: 2 NTYSITLPWPPSNNRYYRHNR----GRTHV---SAEGQAYRDNVARIIKNAMLDIGL--- 51 + +P P+ G+ + S +R+ VA +A+L GL Sbjct: 47 RQLRLFVPGRPAPQGSKDFKGFSKTGKAILKESSDAVGPWRERVALAAASAILAEGLPVL 106 Query: 52 --AMPVKIRIECHMPDR------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + + MP +R DLD L +A D LT W+DD+QVVD Sbjct: 107 AKEFSIAASVTFVMPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDV-VWIDDSQVVDL 165 Query: 98 RVVKMPVT--KGGRLELTI 114 K+ + + I Sbjct: 166 HCRKVLAELTQPPGAHIRI 184 >UniRef50_UPI0001BC49BC hypothetical protein F3_00332 n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC49BC Length = 134 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 18/134 (13%) Query: 1 MNTYSITLPWPPSNNR----YYRHNRGRTHVSA-----------EGQAYR-DNVARIIKN 44 M I P N + +G + + A++ + + + Sbjct: 1 MTQIFIAGNVPSCKNSKRIARIKDKKGNVVATRLINSEVVERYLKTYAFQWNFAGNVAEF 60 Query: 45 AMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDD--AQVVDYRVVKM 102 G P K+ RR+ D N + D + KAG+ DD +++ + Sbjct: 61 HRRIKGKEKPYKVGFYFIRDSRRKFDYINAMQLPCDLMVKAGWIDDDNANEIIPVCLGYE 120 Query: 103 PVTKGGRLELTITE 116 + + + + E Sbjct: 121 VDKRNAGVRIEVLE 134 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGL--AMPVKIRIEC 61 IT P + + + S E ++ + + + + + + Sbjct: 1 MEITFPIEFLVDGTAVSLQAKRRQSIEI--WKSKIVDASREVIPEGHFATEARIAATLFY 58 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 D+DN+ K DAL + DD QV V K Sbjct: 59 FPATEMAGDIDNIVKPILDAL-GRHIYRDDKQVYRLVVQKFEP 100 >UniRef50_B5GC73 Predicted protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GC73_9ACTO Length = 214 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 13/130 (10%) Query: 2 NTYSITLP--WPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKN------AMLDIGLAM 53 Y ITLP P N+ H+ + ++ + + + A L Sbjct: 70 TRYVITLPAGLPLLNSNQRTHHHDKRRLTKRLREAATEAVQECPSLLDALAAARPGPLFE 129 Query: 54 PVKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGG 108 + RRR D N KA D L AG DD +V + KG Sbjct: 130 RAHVLGILRPATRRRADPANWYPSFKAVIDGLVDAGLLDDDDHTRLVGPDMRLGTPVKGA 189 Query: 109 RLELTITEMG 118 +L L I + Sbjct: 190 QLVLIIRGLA 199 >UniRef50_A7A5C0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5C0_BIFAD Length = 130 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%) Query: 15 NRYYRHNRGRTHVSAEGQAY---RDNVAR----IIKNAMLDIGLAMPVKIRIECHMPDRR 67 Y+ R A+ + + +I + L PV + H Sbjct: 11 KAYWWTQNKRGDWRAKYRRTSVVKRCAYLTYRSLINSGKLKPPAKWPVHVTAIIHPLTHG 70 Query: 68 RRDLDN---LQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE-------LTITE 116 R D +N + KA DA+T+A FW DD Y V E + I E Sbjct: 71 RFDPENAAPMVKAILDAITQADFWPDDN--ARYVVGPDYRLGEPSTEKGVYHITIRIEE 127 >UniRef50_C0W5T7 Gp53 family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5T7_9ACTO Length = 130 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 21/135 (15%) Query: 1 MNTYSITLPWP----PSNNRY-YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPV 55 M+ ++ + P S N +R R R + +AY ++ A V Sbjct: 1 MSPSTLVIDVPGNEWLSANGREHRFGRARRTATLRKRAY------LMARHHGLPRYAGRV 54 Query: 56 KIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQV-----VDYRVVKMPVTKG 107 ++ H R R D N KA D LT AG W DD V YR + Sbjct: 55 RVDFYVHTRTRNRMDPANAYPTVKALVDGLTDAGVWADDDDTHLSGPVPYRGEPVLDLPV 114 Query: 108 G--RLELTITEMGNE 120 G R+ L IT++ E Sbjct: 115 GFRRITLVITDLDEE 129 >UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence n=1 Tax=Bacillus phage SPP1 RepID=Q38073_BPSPP Length = 62 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 59 IECHMPDRRR-RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +E ++PD + RD N +K DAL +D ++D + V + R+E+ I+++ Sbjct: 1 MEFYLPDDGKVRDTHNAKKLLLDALEGV-IHENDMWMIDRTIDFHFVKENPRIEIEISKL 59 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 31/143 (21%) Query: 2 NTYSITLPW----PPSNNRYYRHNRGRTHV--------SAEGQAYRDNVARIIKNAMLDI 49 +P S N Y N+ V S + +R +V + AM + Sbjct: 1 MEIDFFVPGLAAPQGSKNSYTIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAMQER 60 Query: 50 G---LAMPVKIRIECH-------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ 93 G + + + P ++ DLD L +A DAL + +D++ Sbjct: 61 GQQICDDAIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGT-VYTEDSR 119 Query: 94 VVDYRVVKMPVT--KGGRLELTI 114 +V+ R K + + + + Sbjct: 120 IVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG---GRLELTITEMGNE 120 R D+DNL K D+L ++DD QVV +K+ ++G G ++ IT + +E Sbjct: 184 HNSRTDIDNLTKFVMDSLNGL-LYVDDKQVVSLSAIKLLDSEGLCEGATDVKITVVKDE 241 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG---GRLELTITEMGNE 120 R D+DNL K D+ + DD QV+ V K+ +G G ++ + + ++ Sbjct: 316 SPTRTDVDNLAKFVLDSCNGL-LYEDDRQVISLHVTKVLDEQGTCLGSTQVDLRAVRDD 373 >UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PFN4_XANAC Length = 305 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 9/79 (11%) Query: 32 QAYRDNVARIIKNAMLDIGL--AMPVKIRIECHMPDRRR------RDLDNLQKAAFDALT 83 ++ RD + I+ ++ D A V + + ++ +R D+DN+ K DALT Sbjct: 43 KSARDELCSNIRRSLQDFNWICAGQVNLELLWYLHATQRQETDKIGDIDNITKPIIDALT 102 Query: 84 KA-GFWLDDAQVVDYRVVK 101 G +DD+Q+ Sbjct: 103 GEKGLLIDDSQIGSMHSFW 121 >UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYJ0_9GAMM Length = 80 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 67 RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 R DL N +KAA DAL F DD Q+V + + G + + T Sbjct: 26 RCIDLANAEKAAVDALQGVAF-EDDKQIVRMVLERGQPVPEGAVFVEWTPF 75 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 38 VARIIKNAMLDIGLAMPVKIRIEC--HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 L +PV + + H P DLDN K+ D+L WLDD QV Sbjct: 17 FCVTAAEEEEVEPLCLPVSLVLSFATHPP----GDLDNYIKSLADSLNGIA-WLDDRQVA 71 Query: 96 DY-RVVKMPVTKGGRLELTITE 116 + V R E+ + Sbjct: 72 RMEVEKVVVVEGDERAEVEVAP 93 >UniRef50_A7H208 Crossover junction endodeoxyribonuclease RusA superfamily n=4 Tax=Campylobacter jejuni RepID=A7H208_CAMJD Length = 129 Score = 49.1 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (12%) Query: 1 MNTYSITLPWPPSNNR--YYRHNRGRTHVSA---EGQAYRDNVARIIKNAMLDIGLA--- 52 M T L +N Y R + VS + ++ + Sbjct: 3 MATREYALYIELKDNPIPYKRTTQRAKFVSKDYLKYLEFKKLLQMEFLRQNKVQCFKAFD 62 Query: 53 --MPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 I +E +++ D DN+ K DAL + +D V+ K L Sbjct: 63 EKKFYSIELEIGFKNKKHGDCDNILKGVLDAL-----FKNDKNVIKGEYELKSFEKSF-L 116 Query: 111 ELTITEMG 118 ++ I+E Sbjct: 117 KVKISEFK 124 >UniRef50_C3PIE5 Putative uncharacterized protein n=1 Tax=Corynebacterium aurimucosum ATCC 700975 RepID=C3PIE5_CORA7 Length = 158 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 5 SITLPW---PPSNNRYYRHNRGRTH-VSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 +I LPW P S N +RG +A+ + + V + +N + G+ + +++ Sbjct: 18 TIELPWEKPPLSLNDSAPASRGAVWGRAAKKREIQQAVHLLARNVRMPEGMH-YLIVQLH 76 Query: 61 CHMPDRRRRDLDNLQ---KAAFDALT-------KAGFWLDD 91 D R RD DN+ K +DAL+ G DD Sbjct: 77 YRPRDNRGRDTDNVAASGKPIYDALSRGSKQIPGLGLVPDD 117 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 27 VSAEGQAYRDNVARIIKNAML-DIGLAMPVKIRIE--CHMPDRRRRDLDNLQKAAFDALT 83 V+ + +A + V+ ++ + P + RI R D+DN+ KA D+L+ Sbjct: 24 VTTQTRALKKIVSAHMRRQVAFVRPAFGPFEARIWTSVLAETRGHHDVDNIAKAVLDSLS 83 Query: 84 KAGFWLDDA 92 W DD Sbjct: 84 GH-IWRDDR 91 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + D+DN+ K DAL +LD+ Q++ V K G E +E+ Sbjct: 56 TNNKPDIDNIMKITADALNGLA-YLDNKQIISCTVGKYYSNVQGASENRESEL 107 >UniRef50_A7H0V1 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0V1_CAMC5 Length = 143 Score = 44.8 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 24/121 (19%) Query: 16 RYYRHNRGRTHVS--AEGQAYRDNVARIIKNAMLDIG---------------LAMPVKIR 58 Y R + + ++ +A A + L + Sbjct: 18 PYKRTTQKMKFTKDYKKYLEWKTLLADAFCAANPNAPKRIIRRGKDWHAVPELCGAYFVE 77 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 D+ D DN+ K DAL + +D KGG +++ I E+G Sbjct: 78 TIAIYKDKTHGDTDNVAKGVLDAL-----FKNDKY-ASGSYSYEYAGKGG-IKVKIYEVG 130 Query: 119 N 119 Sbjct: 131 E 131 >UniRef50_B1I2Y2 Putative uncharacterized protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2Y2_DESAP Length = 191 Score = 44.8 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 44 NAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ-KAAFDALTKAGFWLDDA-QVVDYRVVK 101 + +D + H D R D+DN K + L AG DD+ Q + V+ Sbjct: 99 SQGVDPRFERALACVTVFHRLD-TRWDIDNRAIKYLVNGLACAGVVSDDSWQNLAVLVIG 157 Query: 102 MPVTKGGRLELTITE 116 K R E+ + Sbjct: 158 KYDKKHPRTEIVVCP 172 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 44.8 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 64 PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 P + D+ N+ K D L + DD ++D + K K + E+ + Sbjct: 8 PHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA-KTYGIFFKAEEIRRD 63 >UniRef50_Q7P5T9 Putative uncharacterized protein FNV0869 n=2 Tax=Fusobacteriaceae RepID=Q7P5T9_FUSNV Length = 129 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 22/66 (33%) Query: 52 AMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 P K+ + +R+ D N + FD + + DD V K R Sbjct: 64 EKPYKVELYFIRGSKRKFDYINAAQIVFDLMQHYDYIEDDDSQNIIPVFKGFEVDKFRAG 123 Query: 112 LTITEM 117 + I + Sbjct: 124 VEIRVL 129 >UniRef50_B1I7E1 RUS n=5 Tax=root RepID=B1I7E1_STRPI Length = 52 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 75 QKAAFDALTKAGFWLDDAQVVDYRVVKMPV-----TKGGRLELTITEM 117 KA D +T AG W DD V ++ + RLE I E+ Sbjct: 5 VKAIIDGMTDAGIWTDDNHKVIKKLSFVYGGLSEEKGHYRLEFDIEEV 52 >UniRef50_B2A5E1 Putative uncharacterized protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5E1_NATTJ Length = 181 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 7/97 (7%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLA--MPVKIRIECHMPDRRRRDLDNLQ-KAAF 79 + + + RD IIK A+ L P + I ++ D+ N K Sbjct: 71 NGNFTNRQHKEVRDYWYSIIKRALAGQNLDPIKPAIVYIRYYLDKNC--DVGNFLSKFIQ 128 Query: 80 DALTKAGFWLDD--AQVVDYRVVKMPVTKGGRLELTI 114 D L G DD V K+ K R E+ + Sbjct: 129 DGLVYNGVLEDDDLNNVTLLSEAKLKKEKAPRTEIYV 165 >UniRef50_C7F4G5 Predicted protein n=1 Tax=Cyanophage PSS2 RepID=C7F4G5_9CAUD Length = 124 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 14/122 (11%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM-----LDIGLAMPV 55 M + +P + R RGR ++ A ++ +++ P+ Sbjct: 1 MIEVRLDMPL--MSKARPRVARGRAYMPAPYVNWKKTAQVQLESLWTENDLPTYDKETPI 58 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKA-----GFWLDDAQVVDYRVVKMPVTKGGRL 110 K+ ++ H P R D DNL A DA G W+DD V V V + Sbjct: 59 KLSVQAHGPGRC--DSDNLLGALLDAGLPVKQGWRGCWVDDRVTVIPWVCFEWVKNSEQF 116 Query: 111 EL 112 + Sbjct: 117 WV 118 >UniRef50_C5RA86 Possible dTDP-glucose pyrophosphorylase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RA86_WEIPA Length = 145 Score = 42.5 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 14/108 (12%) Query: 21 NRGRTHVSAEGQAYRDNVARIIKNAMLD--IGLAMPVKIRIECHMPDRRRRDLDNLQ--- 75 GR + + + ++ AM+D + K + + ++PDRR DLDN Sbjct: 38 RAGRMIANKRKHQIQAKIMPLVDQAMVDGLAPIGAKTKFKFDWYLPDRRT-DLDNWTFTH 96 Query: 76 KAAFDALT-----KAGFWLDDAQ---VVDYRVVKMPVTKGGRLELTIT 115 K FDA F +D V Y + R+E+ Sbjct: 97 KFIFDAFQASSVRGQVFMPNDNLNFVVATYDDFRGIDKDNPRVEINWE 144 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 42.1 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 30/131 (22%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M TY IT P A + + + + + + Sbjct: 1 MRTYDIT----PLGKPRMTRADKWKTRPAVMRY--RAFCDEARLRRIHLPESGA-HVTFV 53 Query: 61 CHMPDR---------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 MP + D DN+ KA DAL + DD+ V D R+ K+ Sbjct: 54 MPMPTSWSKKKREQFDGKPHQSKPDCDNMLKALMDAL-----FDDDSSVWDCRITKLWGE 108 Query: 106 KGGRLELTITE 116 KG ++ I E Sbjct: 109 KG---QIIIRE 116 >UniRef50_Q8ZS47 All7665 protein n=2 Tax=Nostocaceae RepID=Q8ZS47_ANASP Length = 148 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 8/106 (7%) Query: 8 LPWPPSNNRYYRHNRGRTHVSAEGQA-YRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR 66 +P PP N R SAE + + + + +++ + L V I ++ + Sbjct: 1 MPLPPCMNEIINQARSSWQASAELKKYWTNLIGEFVRD--CEFCLDSTVWIEFHWYLKN- 57 Query: 67 RRRDLDNLQ---KAAFDALTKAGFWLDDAQ-VVDYRVVKMPVTKGG 108 RD DN+ K D L +D V+ VV G Sbjct: 58 FARDSDNVAAAAKFIMDGLVTGRAIRNDNLTVIQSPVVHYYHRSSG 103 >UniRef50_C9RCI0 Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RCI0_AMMDK Length = 172 Score = 40.6 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 34 YRDNVARIIKNAMLDIGLAMPV---KIRIECHMPDRRRRDLDNLQ-KAAFDALTKAGFWL 89 ++ VA +++ + + +P+ + I +P + D+DN+ + + L AG Sbjct: 67 WKHAVAHAVESLKVTGRVPLPIVPASVLIVACVP-EGKWDVDNVAYRLIVNGLVAAGVLP 125 Query: 90 DDA--QVVDYRVVKMPVTKGGRLELTIT 115 DD+ + V + E+ +T Sbjct: 126 DDSTQYLDSVTVRRGRPEPRPHTEVYVT 153 >UniRef50_Q8R8F6 Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8F6_THETN Length = 182 Score = 40.6 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 29 AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNL-QKAAFDALTKAGF 87 E + + +NV +KN I + + ++ + P D+DN K D + + Sbjct: 81 EEKERWINNVMFALKNVKDKISFD-RIFVFVKFYFPVS-NVDVDNRDIKPIIDGIKYSRI 138 Query: 88 WLDDAQVVDYRVVKMPVTKGGRLELTI 114 DD + R E+ I Sbjct: 139 VADDNYRYVSYGFNANFSDSPRTEIYI 165 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 39.8 bits (92), Expect = 0.029, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%) Query: 64 PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 P + + D DNL KA DA+ + DDA + D RV K+ +G ++ I E+ Sbjct: 100 PHQGKPDFDNLMKALMDAI-----FEDDAHIWDARVTKLWGEEG---KIIIGEI 145 >UniRef50_C3U2J8 Putative uncharacterized protein n=1 Tax=Lactococcus phage P087 RepID=C3U2J8_9CAUD Length = 137 Score = 39.1 bits (90), Expect = 0.048, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%) Query: 58 RIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGR----- 109 I RRRDLDN+ K D+ F +D + + Sbjct: 57 WIFIWHTCDRRRDLDNIGSAVKFILDSFQSLKFIKNDGYRNNRLLTHYYADDVPEKDYEY 116 Query: 110 LEL----TITEMGNE 120 +E+ +TE + Sbjct: 117 VEIIHCTELTEYIEQ 131 >UniRef50_C7XQD1 Predicted protein n=2 Tax=Fusobacterium sp. 3_1_36A2 RepID=C7XQD1_9FUSO Length = 118 Score = 38.7 bits (89), Expect = 0.058, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 1 MNTYSITLPWPP-----SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNA-MLDIGLAMP 54 M + +P S N+ Y H S + ++ + +++++ + P Sbjct: 1 MKSI-FKIPLEIDSKKWSLNKIY----AGVHWSVRVKD-KEYIRQLVRSVTGIRKPYEKP 54 Query: 55 VKIRIECHMPDRRRRDLDN---LQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 V I++ D+ N L K D L K G +D + + Sbjct: 55 VLIKMAF----NSALDVSNHGYLFKLIEDGLVKCGVIQNDGYKYVKCNIMTLQKAFKGVI 110 Query: 112 LTITEMGN 119 + + E+ Sbjct: 111 VEVEEISE 118 >UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZS6_9ZZZZ Length = 119 Score = 38.3 bits (88), Expect = 0.073, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 12/76 (15%) Query: 40 RIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + +N A P + + DLDN+ K DAL DDA V Sbjct: 44 WLCQNHGARRREAK------HVGKPCQSKPDLDNVLKGFMDALR-----TDDASVYAVSA 92 Query: 100 VKMPVTKGGRLELTIT 115 K + + L++ Sbjct: 93 SKFWSEQ-PGVVLSVR 107 >UniRef50_B9MP30 Putative uncharacterized protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MP30_ANATD Length = 204 Score = 38.3 bits (88), Expect = 0.083, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 33 AYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR--RRDLDN-LQKAAFDALTKAGFWL 89 +++ + + + + I E ++P + D DN + K DAL +G Sbjct: 94 KWKEMIYNALSK-LPEKPYFEKAHIVFEFYVPHSVSIKADTDNRMMKTLIDALVISGIIP 152 Query: 90 DD 91 +D Sbjct: 153 ED 154 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 141 7e-33 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 124 9e-28 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 123 2e-27 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 122 4e-27 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 121 6e-27 UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas pha... 117 9e-26 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 116 2e-25 UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legione... 116 3e-25 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 115 4e-25 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 114 9e-25 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 114 9e-25 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 114 1e-24 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 111 6e-24 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 111 6e-24 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 110 1e-23 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 106 3e-22 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 103 1e-21 UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acin... 103 2e-21 UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiace... 103 3e-21 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 102 3e-21 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 101 5e-21 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 101 6e-21 UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pas... 101 6e-21 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 100 1e-20 UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacte... 99 2e-20 UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Hae... 99 2e-20 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 100 3e-20 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 99 5e-20 UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=... 98 8e-20 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 98 9e-20 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 98 1e-19 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 97 1e-19 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 97 1e-19 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 97 1e-19 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 97 2e-19 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 96 2e-19 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 96 3e-19 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 96 3e-19 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 96 3e-19 UniRef50_C9KJA0 Crossover junction endodeoxyribonuclease RusA fa... 96 3e-19 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 95 5e-19 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 95 5e-19 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 95 6e-19 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 95 1e-18 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 94 1e-18 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 94 1e-18 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 94 1e-18 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 94 1e-18 UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus c... 93 2e-18 UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ0... 93 2e-18 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 93 2e-18 UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira R... 93 2e-18 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 93 2e-18 UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimi... 93 3e-18 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 93 3e-18 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 92 4e-18 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 92 4e-18 UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobacu... 92 4e-18 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 92 5e-18 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 91 7e-18 UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacil... 91 8e-18 UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium... 91 8e-18 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 91 9e-18 UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leg... 91 9e-18 UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella... 91 1e-17 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 90 2e-17 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 90 2e-17 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 90 2e-17 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 90 2e-17 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 89 4e-17 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 88 7e-17 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 88 8e-17 UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (H... 87 2e-16 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 87 2e-16 UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replicat... 87 2e-16 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 86 2e-16 UniRef50_Q87BV3 Uncharacterized protein PD_1345 n=13 Tax=Xylella... 86 3e-16 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 86 4e-16 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 86 4e-16 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 86 4e-16 UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp... 85 5e-16 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 85 6e-16 UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteri... 85 8e-16 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 84 1e-15 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 84 1e-15 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 83 2e-15 UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Ta... 83 2e-15 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 83 3e-15 UniRef50_Q9PCT9 Uncharacterized protein XF_1666 n=1 Tax=Xylella ... 82 4e-15 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 82 7e-15 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 81 7e-15 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 81 7e-15 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 81 8e-15 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 81 8e-15 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 81 8e-15 UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus ... 81 1e-14 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 80 2e-14 UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium ... 80 3e-14 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 79 4e-14 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 79 4e-14 UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA fa... 79 5e-14 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 79 5e-14 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 78 6e-14 UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus... 78 7e-14 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 78 8e-14 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 78 1e-13 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 78 1e-13 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 77 1e-13 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 77 1e-13 UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacter... 77 2e-13 UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium... 77 2e-13 UniRef50_UPI0001C369A4 prophage Lp2 protein 24 n=1 Tax=Clostridi... 76 3e-13 UniRef50_A9W5I1 Putative uncharacterized protein n=1 Tax=Methylo... 76 3e-13 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 76 4e-13 UniRef50_Q88UN4 Prophage Lp2 protein 24 n=2 Tax=Lactobacillus pl... 75 7e-13 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 74 2e-12 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 73 2e-12 UniRef50_A6F0M3 Putative uncharacterized protein n=1 Tax=Marinob... 73 3e-12 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 73 3e-12 UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingell... 73 4e-12 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 72 5e-12 UniRef50_Q1GG05 Putative uncharacterized protein n=2 Tax=Ruegeri... 71 8e-12 UniRef50_B6W9X0 Putative uncharacterized protein n=1 Tax=Anaeroc... 71 1e-11 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 71 1e-11 UniRef50_Q2KZ60 Phage-related protein n=2 Tax=Bordetella avium 1... 71 1e-11 UniRef50_Q5YSM1 Putative uncharacterized protein n=1 Tax=Nocardi... 71 1e-11 UniRef50_B3WDE7 Putative uncharacterized protein n=3 Tax=Lactoba... 71 1e-11 UniRef50_UPI00004C2387 hypothetical protein SpyoM01000040 n=1 Ta... 70 2e-11 UniRef50_Q6AC63 Phage-related protein n=1 Tax=Leifsonia xyli sub... 69 4e-11 UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease... 69 4e-11 UniRef50_A5MC55 Putative uncharacterized protein n=2 Tax=Strepto... 69 4e-11 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 69 5e-11 UniRef50_Q9AZ79 RUS n=6 Tax=root RepID=Q9AZ79_9CAUD 68 7e-11 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 68 8e-11 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 68 8e-11 UniRef50_Q4EJG1 Gp63 n=7 Tax=root RepID=Q4EJG1_LISMO 67 2e-10 UniRef50_Q9CIB4 Prophage pi1 protein 15 n=4 Tax=root RepID=Q9CIB... 66 2e-10 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 66 3e-10 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 66 3e-10 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 66 4e-10 UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovi... 66 4e-10 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 65 7e-10 UniRef50_C5B0R6 Putative uncharacterized protein n=2 Tax=Alphapr... 64 2e-09 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 64 2e-09 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 63 2e-09 UniRef50_C7R1F1 Endodeoxyribonuclease RusA n=1 Tax=Jonesia denit... 63 2e-09 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 63 2e-09 UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV... 63 2e-09 UniRef50_B1BBK8 Putative uncharacterized protein n=1 Tax=Clostri... 63 3e-09 UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acineto... 63 4e-09 UniRef50_C0W5T7 Gp53 family protein n=1 Tax=Actinomyces urogenit... 62 5e-09 UniRef50_B1MZE0 dTDP-glucose pyrophosphorylase n=2 Tax=Leuconost... 62 6e-09 UniRef50_UPI0001BC49BC hypothetical protein F3_00332 n=1 Tax=Fus... 61 8e-09 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 61 8e-09 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 61 8e-09 UniRef50_Q854T6 Gp64 n=2 Tax=unclassified Siphoviridae RepID=Q85... 61 9e-09 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 61 1e-08 UniRef50_B1I2Y2 Putative uncharacterized protein n=1 Tax=Candida... 61 1e-08 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 61 1e-08 UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 61 1e-08 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 61 1e-08 UniRef50_C3PI76 Putative uncharacterized protein n=3 Tax=Coryneb... 60 2e-08 UniRef50_C7Q4H8 Endodeoxyribonuclease RusA n=1 Tax=Catenulispora... 59 3e-08 UniRef50_A1B8H5 Putative uncharacterized protein n=1 Tax=Paracoc... 59 5e-08 UniRef50_A7A5C0 Putative uncharacterized protein n=1 Tax=Bifidob... 57 1e-07 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 57 2e-07 UniRef50_B5GC73 Predicted protein n=1 Tax=Streptomyces sp. SPB74... 55 6e-07 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 54 1e-06 UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence ... 54 1e-06 UniRef50_A7H208 Crossover junction endodeoxyribonuclease RusA su... 53 2e-06 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 52 7e-06 UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthom... 51 9e-06 UniRef50_A7H0V1 Crossover junction endodeoxyribonuclease RusA su... 51 1e-05 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 51 2e-05 UniRef50_Q7P5T9 Putative uncharacterized protein FNV0869 n=2 Tax... 50 2e-05 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 50 2e-05 UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobaci... 49 3e-05 UniRef50_C3PIE5 Putative uncharacterized protein n=1 Tax=Coryneb... 49 4e-05 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 49 6e-05 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 47 2e-04 Sequences not found previously or not previously below threshold: UniRef50_C7F4G5 Predicted protein n=1 Tax=Cyanophage PSS2 RepID=... 46 5e-04 UniRef50_C9RCI0 Putative uncharacterized protein n=1 Tax=Ammonif... 44 0.001 UniRef50_B1I7E1 RUS n=5 Tax=root RepID=B1I7E1_STRPI 44 0.002 UniRef50_Q8ZS47 All7665 protein n=2 Tax=Nostocaceae RepID=Q8ZS47... 43 0.002 UniRef50_C5RA86 Possible dTDP-glucose pyrophosphorylase n=1 Tax=... 43 0.003 UniRef50_Q8R8F6 Putative uncharacterized protein n=1 Tax=Thermoa... 42 0.006 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 41 0.009 UniRef50_B2A5E1 Putative uncharacterized protein n=1 Tax=Natrana... 41 0.010 UniRef50_C3U2J8 Putative uncharacterized protein n=1 Tax=Lactoco... 40 0.027 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 40 0.028 UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultu... 40 0.029 UniRef50_C7XQD1 Predicted protein n=2 Tax=Fusobacterium sp. 3_1_... 38 0.071 UniRef50_B9MP30 Putative uncharacterized protein n=1 Tax=Anaeroc... 38 0.077 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 141 bits (355), Expect = 7e-33, Method: Composition-based stats. Identities = 118/120 (98%), Positives = 119/120 (99%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 MNTYSITLPWPPSNNRYYRHNRGRTH+SAEGQAYRDNV RIIKNAMLDIGLAMPVKIRIE Sbjct: 1 MNTYSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGLAMPVKIRIE 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE Sbjct: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 124 bits (311), Expect = 9e-28, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 7/122 (5%) Query: 4 YSITLPWPPSNNRYYRHNRGRTH-----VSAEGQAYRDNVARIIKNAMLDIGLAM--PVK 56 + LP+PPS N Y+RH +SA G+ ++ I + + P Sbjct: 1 MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLRRLPKPTSAPAS 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + I PD R RDLDN KA FDALT AG W DD+QV V PV G++E+TI++ Sbjct: 61 VEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITISK 120 Query: 117 MG 118 Sbjct: 121 YE 122 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI--GLAMPVKIRIE 60 + S+TLP+PPS N Y+R+ +G+T +S +G+ YR + I + + V + ++ Sbjct: 4 SVSLTLPFPPSVNTYWRNLKGKTLISEKGRRYRASAIAAIYQQLPRRSDAITGIVSVTVK 63 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 P RRD+DN KA FDALT A W DD QV + V KGGR E+TI +GN Sbjct: 64 MFPPTSHRRDIDNYLKAPFDALTHANIWKDDDQVKHADIAWCDVVKGGRFEITIRPIGN 122 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 73/118 (61%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M Y ITLP+PPS N Y+ H +GR + +G YR +V I L + + +++R+ Sbjct: 1 MRRYHITLPFPPSVNHYWYHAKGRHFIKEKGIQYRRSVMAEIMRLRLAVRFSGQIRVRVV 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 + PDRR+RDLDNL KA DAL AG + DD Q++D +++ +GG+L++T+T + Sbjct: 61 ANPPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHIIRGEKVQGGKLDITLTLLE 118 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 63/122 (51%), Gaps = 7/122 (5%) Query: 4 YSITLPWPPSNNRYYR-----HNRGRTHVSAEGQAYRDNVARIIKNAML--DIGLAMPVK 56 LP+PPS N Y+R +G+ VS G+ ++ V I + A P + Sbjct: 1 MKFILPFPPSVNSYWRSPNKGTAKGKLLVSEAGRKFKHAVRAAIIEQLKAVPKPSASPAE 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + I H PD RRRDLDN KA FDALT AG W DD+QV + KGGR+E+TIT Sbjct: 61 VVIVLHPPDYRRRDLDNYNKALFDALTYAGIWEDDSQVKRMTIEWGGNAKGGRVEITITA 120 Query: 117 MG 118 Sbjct: 121 FN 122 >UniRef50_Q2NPB1 Putative HNH family gene n=1 Tax=Xanthomonas phage OP2 RepID=Q2NPB1_9CAUD Length = 134 Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M +TLPWPP+ N +R +GR +SA + Y+ VA+++ L + + + Sbjct: 9 MTDLRLTLPWPPTLNSIWRAVQGRIVLSAAARDYKRAVAKLLPVGKAAAPLTGRLMVWVT 68 Query: 61 CHMPD---RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + P +R+ D+ N +K D LT WLDD+Q+ +++ GR E TI + Sbjct: 69 LYPPSTMGKRKWDIANREKIMIDCLTDQRIWLDDSQIDALVLLRGGADGIGRAEFTIQTI 128 Query: 118 GNE 120 ++ Sbjct: 129 TDD 131 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M T + LPWPPS N Y+ ++S + + + ++K + + V + + Sbjct: 1 MKTLDVLLPWPPSINHYWGARGRGRYLSPQARRWHKEAWAVLKAQ--GVRYSGEVAVYVF 58 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 H PDRR+RDLDN+ KA DAL AG DD QV V + P + G++ L + E+ Sbjct: 59 AHPPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVRLVVGEVK 116 >UniRef50_Q9AKY6 Putative uncharacterized protein n=1 Tax=Legionella pneumophila RepID=Q9AKY6_LEGPN Length = 120 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M+ LP+PP+ N YY+ +S +G YR + ++ + + I Sbjct: 1 MDILRFQLPYPPTINHYYKRTPKGLALSTKGIQYRHDAFYLLHKHRNHCK-DKRLAVTIN 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 PD+RRRD+DN+ K D++ AG + DD Q+ +++ V K G + + I+E + Sbjct: 60 LFPPDKRRRDIDNILKCLLDSMQHAGVYDDDNQIDMLTIIRRHVVKDGSVAVWISECSS 118 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 63/116 (54%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 LP+PP+ N Y+R VS G+ YR VA I++ L + L+ + I+I Sbjct: 3 ERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIA 62 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 PD+RRRDLDN+ KA DALT AG +DD Q + +V+ GGRL + I + Sbjct: 63 EPPDKRRRDLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPVSGGRLGVKIYPI 118 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 72/119 (60%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 MN Y LP+PPS N Y+R + ++S +GQ YR +V +II+ LDI ++I++ Sbjct: 1 MNEYQFVLPYPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVI 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +PD RRRDLDN+ K D+L AGF DD Q D RV++ GGRL + ITE+ + Sbjct: 61 ADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELES 119 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 4/116 (3%) Query: 3 TYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LP+PP+ N Y++H R G+ +++A+G+ ++ V + +N V + ++ Sbjct: 1 MVVLELPYPPTVNHYWKHTRNGKHYITAKGKTFQQEVRWLTRN---RPKFIGKVLLEVDI 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + PD R+RD+DN+ KA DALT AG +DD+ V K+P KGG++ + I E Sbjct: 58 YPPDNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPSIKGGKVIVRIKEF 113 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%) Query: 1 MNT-YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD---IGLAMPVK 56 M+ I LP+PPS N Y+RHN T++S + +A++ A+I+ V Sbjct: 1 MDENMIIELPFPPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNEMRQKSGCQKFEGEVS 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP---VTKGGRLELT 113 + ++ ++P++ +RD+DN K D+LT A W DD+QV + K+ KGG+ + Sbjct: 61 VLMQLYLPNKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEKIDNNGGVKGGKCVVA 120 Query: 114 ITEMGN 119 I E Sbjct: 121 INEYLE 126 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LPWPPSNN YYRH RT +S + AYR V ++K+ +L +++ E Sbjct: 1 MECELYLPWPPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKDRVLPE-FTGEIELYAEF 59 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV-TKGGRLELTITEM 117 + PD+R+RDLDNL K D L AG + DD+Q+V +VK GR + I + Sbjct: 60 YPPDKRKRDLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEPHRPDGRAYVRIKDY 116 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 25/141 (17%) Query: 2 NTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 T+P P R +R R T+ A+ + Y+ + L P+KI Sbjct: 1 MIIEFTIPGKPVGQGRPRFSRHRGYVQTYDPAKSRQYKAIATMCAQRVYSGEPLETPLKI 60 Query: 58 RIECHMP-------------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 ++ + ++ D+DN+ K D+L + DD QV+ Sbjct: 61 TVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLNGV-IYHDDKQVIQLV 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 K K R+E+T+ E+ Sbjct: 120 AFKAYAEK-PRVEVTVEELEQ 139 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Query: 4 YSITLPWPPSNNRYYRHNR-----GRTHVSAEGQAYRDNVARIIKNAMLD--IGLAMPVK 56 +++LP+PPS N Y+R GR VS G+ YR I + + + Sbjct: 1 MNLSLPFPPSVNGYWRAPNRGKLAGRHLVSERGRRYRAEAVAEILEQLRGMPQPVKGDLA 60 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + P R +RDLDN KA FD++ AG W+DD+Q+ PVTKGG Sbjct: 61 VSVMFCPPSRAKRDLDNYFKALFDSVINAGIWIDDSQIKKLEAEWGPVTKGGECIF 116 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 20/136 (14%) Query: 1 MNTYSITLPWPPSNNRYYRHNR--GRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKI 57 M +S T+P P R + GR + + +Y +A AM + P+ I Sbjct: 1 MMEFSFTVPGVPVGKGRPRFVKATGRAYTPEKTASYESLIAYAASQAMRGAQPINAPIGI 60 Query: 58 RIECHMPDR---------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 +++ P + D DN+ KA DAL W DD+QV + K+ Sbjct: 61 KVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGI-VWADDSQVARTSIAKV 119 Query: 103 PVTKGGRLELTITEMG 118 L + + +G Sbjct: 120 YGDV-PGLHVFVEALG 134 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 5/116 (4%) Query: 3 TYSITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 SI L P S N+ YR GR ++ +G+ + A + L PV + ++ Sbjct: 1 MLSIILEGQPVSVNQLYR---GRRFLTTDGKRTKLLNAVSARKQYRGAPLEGPVCVELQV 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + + D+DN+ KAA D+LT W DD Q+ + K+ R+ELT++++ Sbjct: 58 YFKSKASSDIDNVCKAALDSLTGI-LWKDDRQIQELHAYKLQDKLRPRIELTLSQL 112 >UniRef50_B0V859 Putative Holiday-junction resolvase n=1 Tax=Acinetobacter baumannii AYE RepID=B0V859_ACIBY Length = 168 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 PPS N Y+ + R +S + + + V +++ +K+ + H P R+ RD Sbjct: 66 PPSVNHYWVASGKRRFLSNKARDFHALVRQVVPAHKS----TARLKLEVTFHFPTRQCRD 121 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +DN KA D+L K G +DD Q + V + V KGG ++L ++E+ Sbjct: 122 IDNYLKATIDSLVKCGLCVDDEQFDELLVKRGNVIKGGLIKLKVSEV 168 >UniRef50_A6TU92 Endodeoxyribonuclease RusA n=10 Tax=Clostridiaceae RepID=A6TU92_ALKMQ Length = 141 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 3 TYSITLPWPPSNNRYYR--HNRGRTHVSA-----EGQAYRDNVARIIKNAMLDIGLAMPV 55 T+P P + ++ H G+ + AY + +A I L + Sbjct: 1 MLKFTIPGRPVSKSNFKLTHKNGQVWMPKSGKHSRYVAYENMIAGYINQQYAGPQLTQQL 60 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + + PDRR DL N K+ D + K+G +D Q+ + ++ R+E+ + Sbjct: 61 ITILRLYFPDRRMGDLHNYPKSICDGIEKSGIISNDKQLRPVLLFDFIDSENPRVEIELY 120 Query: 116 EMG 118 + Sbjct: 121 DFE 123 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 26/142 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLD-IGLAMP- 54 M + + T+P P + R T+ + +Y + V AM + Sbjct: 1 MTSITFTVPGTPVGKGRPKFARRGKFVTTYTPEKTASYENLVKLAAAKAMDGRQPIDGAA 60 Query: 55 -VKIRIECHMPD-----------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 V I + P + D+DN+ K FDA+ + W DD QV+D Sbjct: 61 QVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFDAMNEI-VWQDDKQVID 119 Query: 97 YRVVKMPVTKGGRLELTITEMG 118 K ++ R E+ IT++G Sbjct: 120 LSCYKRY-SETARAEVKITQIG 140 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 27/147 (18%) Query: 1 MNTYSITLPWPPSNNRYY--RHNRGR-------THVSAEGQAYRDNVARIIKNAMLDIGL 51 M +++LP+P S NRY+ R + + T+V+ E +AY++ VA + K+A + L Sbjct: 1 MPKITLSLPYPISANRYWASRIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVREPL 60 Query: 52 AMPVKIRIECHMPDRRRR------------------DLDNLQKAAFDALTKAGFWLDDAQ 93 A V+I + + DLDN QK DAL D Q Sbjct: 61 ACRVQIDYTLYPKRPQDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDGWQ 120 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 V + R+ +T+T + E Sbjct: 121 VRRIHAERGVPDGEARIVVTVTTLLEE 147 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 25/141 (17%) Query: 2 NTYSITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 IT+P P + R + + Y+ VA L +++ Sbjct: 1 MEIKITVPGQPVPQGRPKFTTIGGHARAYDPKKSVDYKRIVAYHAMQHKPKQLLEGELEV 60 Query: 58 RIECH------MPDR-------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 I + R + D DN K DA+ W DD Q+VD Sbjct: 61 EILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAMKGI-IWKDDGQIVDLI 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 K +K R+E+T+ +G Sbjct: 120 ARKYYSSK-PRIEITVRTLGE 139 >UniRef50_A3MZM1 Predicted Endodeoxyribonuclease RusA n=5 Tax=Pasteurellaceae RepID=A3MZM1_ACTP2 Length = 122 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 7/122 (5%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRT-HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + I LP+PPS N Y+RH + T ++S EG+A+R V I K VKI+I Sbjct: 3 DYLEIALPYPPSVNHYWRHTKAGTHYISREGKAFRAKVLNICKQF---DPFNGAVKIQIY 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVK-MPVTKGGRLELTITEM 117 + PD R RD DNLQKA FDALT +G DD + DYRVV + KGG + + I + Sbjct: 60 VYYPDNRSRDPDNLQKALFDALTASGLIKDDNNKIIKDYRVVGMDEIRKGGMVVIKIKGL 119 Query: 118 GN 119 + Sbjct: 120 DD 121 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 48/141 (34%), Gaps = 26/141 (18%) Query: 4 YSITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGL-AMPVKIR 58 T+P P R R R A+ AY VA + A+ L A PV I Sbjct: 7 VVFTVPGEPVGKGRPRIGRVGAHARMFTPAKTVAYEGLVAMAAQEALAGRSLIAGPVLIE 66 Query: 59 IECHMPDRRRR-------------------DLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + P R D DN KA DAL W DD QVV+ + Sbjct: 67 LRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDALNGVA-WKDDTQVVNVML 125 Query: 100 VKMPVTKGGRLELTITEMGNE 120 K R+E+ I + + Sbjct: 126 AKRYAEV-PRVEVKIVPLMAQ 145 >UniRef50_C8Q091 Holliday junction resolvase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q091_9GAMM Length = 126 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%) Query: 1 MNTYS----ITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPV 55 M + T+P PPS N Y +H RG +S E + Y+ + + I + Sbjct: 1 MKKLNLLAQFTMPVPPSVNGYLKHDKRGIARLSDEAREYKMDAYQAIGRYAPSEPSTKRL 60 Query: 56 KIRIECHMPDRR---RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + H + +RDLDN QK DAL A F+ +D Q+ + + V GG +E+ Sbjct: 61 ALELIIHFGSKAIDAKRDLDNCQKLILDALEYARFFNNDQQLDEIVCKRGEVINGGLIEV 120 Query: 113 TITEMG 118 T+ E+ Sbjct: 121 TLCEIE 126 >UniRef50_B0QX07 Predicted Endodeoxyribonuclease RusA n=1 Tax=Haemophilus parasuis 29755 RepID=B0QX07_HAEPR Length = 134 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 21/135 (15%) Query: 2 NTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 I LP+PPS N Y+RH R G+ ++S +G+ +R+ ++ V + + Sbjct: 3 RELEIALPFPPSVNHYWRHTRQGKHYISDKGKRFRELALLAC---FAELPFDGLVAVDVR 59 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVV---------KMPVT---- 105 ++PDRR RDLDNL K D+LT A DD+ VV + K Sbjct: 60 VYLPDRRDRDLDNLWKVIMDSLTHAKILKDDSWKYVVKESIEAVGEVRVNDKGEPEFIPE 119 Query: 106 --KGGRLELTITEMG 118 K GR+ + I E+ Sbjct: 120 IVKDGRVVVKIKELK 134 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARI----IKNAMLDIGLAMPVK 56 ++T+ LP PPS N YYR ++S E + +R +V I N + Sbjct: 3 VHTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKRWFDKEQRLA 62 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG--GRLELTI 114 + + + +RR D+DN KA D L + G + +D Q+ D RVV+ V K G + + Sbjct: 63 MTVTLYPTNRRSFDIDNRLKALLDVLQEIGVYHNDNQIDDLRVVRGAVVKRELGFCVVEV 122 Query: 115 TEM 117 Sbjct: 123 KPC 125 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 10/127 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARI---------IKNAMLDIGLA 52 +LP PPS N Y R +S E QA++ V R I L + Sbjct: 1 MVVQFSLPLPPSINSQYVTVGNRRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQ 60 Query: 53 MPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLEL 112 + + ++ + RRDLD K D++ ++D +VVD +VK RLE+ Sbjct: 61 GYIALFLDFYFETPLRRDLDGGLKITQDSI-CTSLGINDNRVVDIHLVKRIDPLHPRLEV 119 Query: 113 TITEMGN 119 + + + Sbjct: 120 ELEALSD 126 >UniRef50_O67766 Crossover junction endodeoxyribonuclease rusA n=2 Tax=Aquificaceae RepID=RUSA_AQUAE Length = 126 Score = 98.0 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 2/121 (1%) Query: 1 MNTYSITLP--WPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 M + L P +NRY R G+ + ++ + + + Sbjct: 5 MEEIELYLSKLPVPKSNRYIRPKGGKVFKPPRVTNWEARAIWELREQFKGDAIDYEISVD 64 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 I +P+RR+RD+DN+ K+ +D + KAG +D + + VK + + I Sbjct: 65 ITLILPNRRKRDIDNMLKSLWDVMEKAGVIKNDNLIFEVHTVKKIEKGKEGVIIKIRPFQ 124 Query: 119 N 119 + Sbjct: 125 S 125 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 98.0 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVKIR 58 +P R T++ + +R+ + M V + Sbjct: 200 VRFCIPGTVVPKARPRVTSNGTYMPNRYREWRNRAEIELYRQMSQFHSTHKFPLQKVAVS 259 Query: 59 IECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLELTI 114 + R DLDN+ A DALT AG +DD + V + TK + + I Sbjct: 260 LRFFGNHRTNSDLDNMAGACLDALTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWIEI 319 Query: 115 TEM 117 + Sbjct: 320 QPL 322 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 27/143 (18%) Query: 1 MNTYSITLPWPPSNNRYYR----HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M+ T+ P R + + A+ + ++ VA + + + PV Sbjct: 1 MDCIKFTVYGEPVAQGRPRGSIRNGKVHMRDPAKSKYFKQYVALVASQHRPETIITGPVS 60 Query: 57 IRIECHMPDR---------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + ++ + P + D+DN K DAL + DD+QVV Sbjct: 61 MDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDALNHL-IYKDDSQVV 119 Query: 96 DYRVVKMPVTKGGRLELTITEMG 118 D +V K ++ R+E+ I E+ Sbjct: 120 DLKVSKFY-SEEPRVEVMIREVS 141 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 25/141 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 T+ PP R T+ + + Y+ +A + K ++ P++I+ Sbjct: 1 MIKFTINIPPHPQERPRFRNAGNFVQTYDPPKSKEYKKKIANVAKMYAPGTPISTPIQIK 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + + R D+DN KA DAL + DD ++V+ Sbjct: 61 LIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALNGI-MFSDDGKIVELIA 119 Query: 100 VKMPVTKGGRLELTITEMGNE 120 K R E++ITE+ +E Sbjct: 120 YKRYSDL-PRTEVSITELVSE 139 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 31/143 (21%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM 63 +T+P P R + T+ + Y V + + L +KI I+ + Sbjct: 16 IKLTIPGEPCAKGRPRVGKFGTYTPEKTLNYETLVKELYIIQHANKKLQGQLKIDIKAYF 75 Query: 64 PDR-----------------------------RRRDLDNLQKAAFDALTKAGFWLDDAQV 94 ++ D DN+ K DAL + DD+Q+ Sbjct: 76 KIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDNVGKIISDALNGLA-YDDDSQI 134 Query: 95 VDYRVVKMPVTKGGRLELTITEM 117 V V K + R+E+ I+E+ Sbjct: 135 VSAIVEKFY-SNDPRVEVEISEV 156 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 5/118 (4%) Query: 4 YSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECH 62 T+P P R + G + + Y V N L PV + ++ + Sbjct: 1 MHFTVPGRPVPKYRPRVGKHGNIYTPQNCREYERTVGLYASNVFP-QPLTGPVTLGVKFY 59 Query: 63 MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 RR DLDN KA D L W DD QVV + R E+ + +GN+ Sbjct: 60 F-SRRPGDLDNYVKAISDGLNGIA-WQDDRQVVKLFASLKRGSPE-RAEVVVQRIGND 114 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 22/136 (16%) Query: 2 NTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + + P R R G +++ + +AY+D I+KN L +K++ Sbjct: 15 QVIKLVIDGEPVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKNQYKGEPLMGALKVKTT 74 Query: 61 CHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK 101 + ++ + D+DNL KA DA T W DD Q+V + K Sbjct: 75 FYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGV-VWHDDNQIVSVEMDK 133 Query: 102 MPVTKGGRLELTITEM 117 M + R+E+ + E+ Sbjct: 134 MYAEE-PRVEMEVHEL 148 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 28/145 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT-----HVSAEGQAYRDNVARIIKNAMLDIGLA--M 53 M T T+P P + R + + Y + + + +I Sbjct: 1 METVRFTVPGAPKGKARAKTVRSKKGGTFSYTPEGTMLYENLIKCCYRQESNNIIFNDGQ 60 Query: 54 PVKIRIECHMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 P+K+ I + P ++ D+DN+ K+ DAL K + DD QV Sbjct: 61 PLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILDALNKLA-YRDDTQV 119 Query: 95 VDYRVVKMPVTKGGRLELTITEMGN 119 V + K + R+E+ I E+ N Sbjct: 120 VTLHMEKHYA-EDPRVEVEIEEIKN 143 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 25/139 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 I + P R + R++ + + Y+ +V ++ L + + Sbjct: 1 MIRIEVAGEPVPQGRPRFSGRGGFVRSYDPPKSKEYKKHVKEEVQQQYHGKPLEGQLLVE 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + P ++ + D+DN KA DA T W+DDAQ+V + Sbjct: 61 LSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACTGL-LWVDDAQIVSTKT 119 Query: 100 VKMPVTKGGRLELTITEMG 118 K ++ +E+ + Sbjct: 120 NKYY-SENPHVEMLVIPYE 137 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 27/143 (18%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHV----SAEGQAYRDNVARIIKNAMLDIG----LAM 53 TLP P R R V + Y+ ++A I + A + G Sbjct: 1 MRIKFTLPGKPVAQGRPRFYRKGNFVVATDPKPSKVYKADIAYIAQKACEEAGLDGLFEG 60 Query: 54 PVKIRIECHMP----------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 P+ I+I + P +R D DN+ K+ D L + DD Q+ + Sbjct: 61 PLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV-LYHDDGQISEL 119 Query: 98 RVVKMPVT--KGGRLELTITEMG 118 V K +G R+E+ + +M Sbjct: 120 IVRKRIAAQGEGPRIEVELYKME 142 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 25/140 (17%) Query: 4 YSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 I P R + R + + Y+ + + K D L P+ + + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRLYDPKKVSTYKKQLGMMCKFQYKDKPLDGPLIVSL 60 Query: 60 ECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 + + + + D DN K+ D L W DD Q+V Sbjct: 61 KFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLNGL-LWEDDNQIVKIVAE 119 Query: 101 KMPVTKGGRLELTITEMGNE 120 K + R+E+ + + Sbjct: 120 KYYSDR-PRIEIEVERLEQN 138 >UniRef50_C9KJA0 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJA0_9FIRM Length = 125 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 4/123 (3%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAM----PVKI 57 IT+P P + N + + +G ++ G+ + N ++ AM + G V + Sbjct: 3 KELFITIPVPITENHAFFYRKGMKILNKRGKEWMKNAEDSMRVAMEEQGWQTVNNEKVIV 62 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + + PD+R RD N K D++ AG +D ++ + + RLE+ I Sbjct: 63 ELWHYWPDKRVRDCSNSLKLLCDSIQNAGIVNNDRWLLCRQQDFSVDRENPRLEMRIRRF 122 Query: 118 GNE 120 NE Sbjct: 123 NNE 125 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHN-RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M + I + P R GR + E + + + + ++ + + PVK+ I Sbjct: 1 MAYFKIEIQTKPVPKARPRLGANGRMYTPKETREFEELIGWTTRSVVRK-PIEKPVKVNI 59 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 + + + R D DN+ KA D L+ F DD QVVD R+ K+ ++ ++I E Sbjct: 60 DVY--SKTRADFDNIAKAILDGLSGVAFI-DDRQVVDLRIRKLTPVNCEKIVISIRE 113 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 25/137 (18%) Query: 3 TYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 I +P P R + R++ + + Y+ VA +K+ + V ++ Sbjct: 1 MIRIEVPGEPVPQGRPRFSGRGGFVRSYDPPKSREYKKKVAAAVKDQYHGDPVDYAVHVQ 60 Query: 59 IECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRV 99 + + P ++ + D+DN KA DA T W+DDAQ+V + Sbjct: 61 LSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACTGL-LWVDDAQIVSTKT 119 Query: 100 VKMPVTKGGRLELTITE 116 K ++ +E+ + Sbjct: 120 NKYY-SEDPHVEMLVMP 135 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 26/141 (18%) Query: 2 NTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVK 56 +P P R R RT+ + Y + V + AM D A PV+ Sbjct: 16 RRVVFVVPGKPVAKGRPRFVRRGPHVRTYTPEPTERYENLVKMAAREAMRDSEPYAGPVR 75 Query: 57 IRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + ++ +P ++ D DN+ KA D + + DD QVVD Sbjct: 76 LIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALKDGMNGV-VYGDDGQVVDL 134 Query: 98 RVVKMPVTKGGRLELTITEMG 118 V K T + + E+ Sbjct: 135 WVSKRYAT-TPGVRIEAIELN 154 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIEC 61 ITLP+ R RG + +AY VA + + AM P+++ IE Sbjct: 4 EVHITLPFAAIGKGRPRVYRGIASTPPKTRAYEHQVATLARAAMRGRLPFDGPIRVLIEI 63 Query: 62 -------HMPDRR------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 RR + D+DN KA D + + DD Q+V + K Sbjct: 64 DVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILDGMNGIA-YRDDTQIVIALLSKR 122 Query: 103 PVTKGGRLELTITEMGNE 120 + ++ + + E+ + Sbjct: 123 YAS-DAQVRIAVEEIAGQ 139 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 8/121 (6%) Query: 3 TYSITLPW-PPSNNRYYRH----NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA---MP 54 + L PS N YR+ R +S E + + + + + G Sbjct: 1 MNRLVLEGLVPSVNHMYRNAYKGKRAVRVLSQEAREWYEETVILASDWRKKNGWQTAGGK 60 Query: 55 VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 V +R+ + PDRRRRD N K DAL A F+ DD + + + R+E+ + Sbjct: 61 VIVRLWFYFPDRRRRDTHNGLKILLDALEDARFYDDDKHALPQVMDYGIDRERPRVEIEL 120 Query: 115 T 115 Sbjct: 121 E 121 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 11 PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRD 70 PPS N + + + S G+ + + +K +K+ I + R +RD Sbjct: 2 PPSVNTLWVNKHRGRYKSKRGKEFEEIAKYELKKQYKGEVTKKRLKVEIWLYFKTRAKRD 61 Query: 71 LDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +DN KA D+L DD + D V K+ ++ + I E GN Sbjct: 62 IDNYNKAILDSLKGI-VIEDDELIDDLAVHKIKGHGKDKVYIEILERGN 109 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 22/131 (16%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM-LDIGLAMPVKIRIEC 61 S T+ P R R T+ + + Y +V + AM V + + Sbjct: 23 RVSFTVEGVPVGKARARVTRNGTYTPKKTRRYEHDVRTVAMQAMGALRPCRDAVHVSLVV 82 Query: 62 HMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 +P R DLDN +KA DAL + DD+Q+ D K Sbjct: 83 FLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDALNGV-VYHDDSQICDVVKSKR 141 Query: 103 PVTKGGRLELT 113 + R+ + Sbjct: 142 YSDR-PRVVIE 151 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 23/134 (17%) Query: 4 YSITLPWPPSNNRYYRH--NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 I + P + R G T+ + Y + V + L V I Sbjct: 1 MKIVIDGKPMGKQRPRFNSKTGNTYTPDKTVNYENWVKLCYQQQCKGEKLTGEVVAFINA 60 Query: 62 HMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + + + D+DN+ K D+L + DD Q+V + K Sbjct: 61 YYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLNGLA-YKDDKQIVFCAISKW 119 Query: 103 PVTKGGRLELTITE 116 + R+E+ + E Sbjct: 120 YG-ENPRVEVILEE 132 >UniRef50_A1HR43 Endodeoxyribonuclease RusA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR43_9FIRM Length = 124 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 1 MNTYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLA----MPV 55 M +TLP PS N YR+ R ++ G+A+++ I K A G + Sbjct: 1 MTMLKLTLPIVPSVNHCYRNVSIHRRVLTPIGKAWQEKAQYIAKAAAAKQGWRFSKRQKL 60 Query: 56 KIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + + PD R RD+ N +K D L + +D V+ + R+E+ I Sbjct: 61 VMEYWTYWPDYRTRDVHNQEKLLLDTLEGI-LYDNDKWVLPRAMDFAVDKVNPRIEILIY 119 Query: 116 EMG 118 + Sbjct: 120 PLE 122 >UniRef50_Q6UJ09 Gp23 n=4 Tax=unclassified Myoviridae RepID=Q6UJ09_9CAUD Length = 131 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 YS+ LP+PPS NR YR GR +S + Y V + +A +++ + Sbjct: 4 TRYSLILPFPPSLNRAYRAVAGRVVLSKAARQYGVAVRNALP-VGRAERIAGRLRVVVTV 62 Query: 62 HMPDR---RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM---PVTKGGRLELTIT 115 H P R R D+ N +K DALTKAGFW DD+Q+ +RV + G + + Sbjct: 63 HPPARLVGRAWDVANREKLLSDALTKAGFWRDDSQIDSFRVDRGEFLETRPAGCAVVDVE 122 Query: 116 EM 117 + Sbjct: 123 VL 124 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 NTYSITLPW-PPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIG-LAMPVKIR 58 + I +P PP+ N +YR +R G + +AEG+A++ V +++ A + A V + Sbjct: 21 KIFEIEIPGLPPTVNHFYRTSRTGVRYKTAEGKAWQAGVVLLMRTANKNYQAYAGEVGLY 80 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 I+ D+RR D+DN KA D L AG +D QV++ ++ + + I ++ Sbjct: 81 IDLMSTDKRRWDVDNRIKALQDCLASAGVIKNDTQVIELHARRVHGD-DEKTNVMIYKLA 139 Query: 119 N 119 Sbjct: 140 E 140 >UniRef50_B5VV93 Endodeoxyribonuclease RusA n=2 Tax=Arthrospira RepID=B5VV93_SPIMA Length = 278 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 9/124 (7%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVKIR 58 S + R T++ + +R+ + + + L + Sbjct: 154 ISFVIEGAVVPKARPRVTSNGTYLPPRYREWRNRAEVELYRQISERNLTNKFPLRRAAVT 213 Query: 59 IECHMPDRRRRDLDNLQKAAFDALT--KAGFWLDDA--QVVDYRVVKMPVTKGGRLELTI 114 I R D+DNL A DALT AG +DD + RV P + + I Sbjct: 214 IRLFGNHRTNSDIDNLAGACLDALTLQGAGVLMDDRLSCLPKLRVEFFPDIPKTGVWIDI 273 Query: 115 TEMG 118 + Sbjct: 274 EPLS 277 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 27/145 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG-----RTHVSAEGQAYRDNVARIIKNAMLDIGL-AMP 54 M +P P + + R + + +Y +A + AM L P Sbjct: 1 MTIVRFEVPGTPVGKGRPKVSTRGGKFARMYTPEKTASYEGLIALSARQAMGGRPLIDGP 60 Query: 55 VKIRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 V + + + ++ D DN+ KA FD + W+DD Q Sbjct: 61 VDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADNVLKAVFDGMNGV-VWVDDVQAC 119 Query: 96 DYRVVKMPVTKGGRLELTITEMGNE 120 + K + + + + +MG + Sbjct: 120 GVMLRKRYA-QTPGVTVVVRQMGGD 143 >UniRef50_A7JUB5 Possible endodeoxyribonuclease n=2 Tax=Mannheimia haemolytica RepID=A7JUB5_PASHA Length = 119 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 3 TYSITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + LP+PPS N Y+R ++ R V G+ Y+ +N V+I+ + Sbjct: 1 MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQN---KPKFGGQVEIKCDV 57 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 + PD R RDLDNL K D+L + +DD++ V KGG + + I E Sbjct: 58 YFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGNQKGGAVIVRIKE 114 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 92.6 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 25/141 (17%) Query: 3 TYSITLPWPPSNNRYYRHNRGR------THVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 +TLP+P S NRY+R R T VS E +AY++ V R + A + V Sbjct: 1 MIELTLPYPISANRYWRTYLPRGCAAPVTTVSPEARAYQNRVRRAAREAGVLCPFPGRVA 60 Query: 57 IRIECHMPDRRRR------------------DLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + + DLDN QK FDA+ + +D + Sbjct: 61 VSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGI-VYENDNLIRRIE 119 Query: 99 VVKMPVTKGGRLELTITEMGN 119 + R+ +T+ + + Sbjct: 120 GERAVPDGDARVLVTVEPIED 140 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 92.2 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 23/137 (16%) Query: 2 NTYSITLPWPPSNNRYYR--HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 S ++ P R + + Y VA+ A D L +++ I Sbjct: 1 MEISFSIDGKPFGKERPRPNRTGHGVYTPERTKMYEYKVAQSASLAFFDEPLDSDIRVCI 60 Query: 60 ECHMP-----DRRR--------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 + +R+ D DN+ KA D + + DD QV++ +V Sbjct: 61 SAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGMNGV-VYKDDKQVIELKVT 119 Query: 101 KMPVTKGGRLELTITEM 117 K K R+++++ E+ Sbjct: 120 KQYAEK-PRVDVSVEEI 135 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 92.2 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 26/144 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAML-DIGLAMPV 55 M T+S T+P P + + R + E Y + V + K D + V Sbjct: 1 MTTFSFTVPGKPFGKQRPKATRRGVHASVYTPKETVNYENLVVAMFKQKYPLDKPIDGEV 60 Query: 56 KIRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 + I + + DLDN+QK +DAL + DD+ ++ Sbjct: 61 RGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYDALNGIA-YTDDSHIIA 119 Query: 97 YRVVKMPVTKGGRLELTITEMGNE 120 R K R+E+ I N+ Sbjct: 120 MRCAKFYSDV-PRVEVLIEGAVND 142 >UniRef50_B4U8U8 Endodeoxyribonuclease RusA n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U8U8_HYDS0 Length = 150 Score = 92.2 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 4/122 (3%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD----IGLAMPVKIR 58 I+ P NRY R G + ++ + I + + V + Sbjct: 7 YLFISEPPKGKANRYIRQKGGAVFKPWKISSWETKASWEISLQLKKLKFKEPFSCKVSVE 66 Query: 59 IECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 +PD+RRRD+DN+ K +D L K +D + + +K + + I Sbjct: 67 AIIFLPDKRRRDIDNMLKTLWDVLEKNDVIKNDNLIYEINTIKHVEKGLQGIFIKIKPYE 126 Query: 119 NE 120 + Sbjct: 127 EQ 128 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 10/119 (8%) Query: 1 MNTYS---ITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M + LPWPP S N Y ++ E A+RD VA + + ++ V+ Sbjct: 1 MMRRRPACLCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGHKAEVP----VE 56 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKGGRLELT 113 +RI + PD RRRD DN+ K DAL +AG DD V YR+ GG +E+ Sbjct: 57 LRIRLYPPDNRRRDADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEWGQARPGGAIEVE 115 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 28/142 (19%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVS----AEGQAYRDNVARIIKNAMLDIG-LAMPVKIR 58 +TL P R R + + + + +R++ +I N + L ++ R Sbjct: 1 MKLTLNIEPKPQSRPRFARRGSFTTTYEDKDMKTWRNHCQLLIANQYMGQPILEGALRTR 60 Query: 59 IECHM---------------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + ++ P ++ D+DN +KA +D+++ + DD Q+ + Sbjct: 61 LRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDSMSGI-VFQDDGQIALH 119 Query: 98 RVVKMPVTKGGRLELTITEMGN 119 V K R+E+ I M + Sbjct: 120 DVGKFYSL-NPRIEVEIEVMKS 140 >UniRef50_C8WWQ1 Endodeoxyribonuclease RusA n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WWQ1_ALIAD Length = 131 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 3 TYSITLPWPPSNNRYYRH------NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMP-- 54 + LP PPS N YR + ++++ Q +R + A + + G MP Sbjct: 1 MQRLILPLPPSVNHAYRTYVHPQTGQRIRVLTSKAQKFRRDAAYLALRWRQETGWTMPQP 60 Query: 55 ---VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 V +R+ P RRR D N +K DAL + +D V+ + K RLE Sbjct: 61 GTKVVLRLWYFWPSRRRMDTHNREKVLLDALEGV-LYPEDRWVLIQEMDFEVDRKRPRLE 119 Query: 112 LTI 114 + + Sbjct: 120 IEV 122 >UniRef50_Q119T1 Endodeoxyribonuclease RusA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q119T1_TRIEI Length = 270 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 9/123 (7%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLA-----MPVK 56 ++ +P R T++ + + +R+ I + + L Sbjct: 145 TIINLYIPGKIVPKARPRVTANGTYLPSRYRIWRNQAEVEIYRQVSKLNLEVSLPIQRAA 204 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDA--LTKAGFWLDDA--QVVDYRVVKMPVTKGGRLEL 112 I I R DLDNL A DA L AG DD + + +P K + + Sbjct: 205 ISISFCGKHRTNSDLDNLAGACLDALTLNGAGVLQDDRLSCIPKLNIEYIPHIKKIGVWI 264 Query: 113 TIT 115 I Sbjct: 265 EIK 267 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 91.5 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 24/138 (17%) Query: 2 NTYSITLPWPPSNNRYYRHN--RGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 + T+ P R N RT+ + ++Y + + + ++ + +K+ + Sbjct: 5 MKVNFTIYGEPVGKERPRFNLATKRTYTPNKTKSYEELIKWLYQSKVKHY-FEGYIKMTL 63 Query: 60 ECHMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 C+ ++ D+DN+ K D+L + DD Q+V+ Sbjct: 64 RCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSLNGIA-YKDDTQIVEVVAS 122 Query: 101 KMPVTKGGRLELTITEMG 118 K K R+E+ + ++ Sbjct: 123 KYYSDK-PRVEVILEDIS 139 >UniRef50_B5ZX46 Endodeoxyribonuclease RusA n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2304 RepID=B5ZX46_RHILW Length = 119 Score = 91.5 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 1 MNTYSITLPWPPSNNRYYRH-NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M ++S LP+PPS N +R+ RG +A+ A+ + + ++ L V Sbjct: 1 MKSFSAILPFPPSVNNLFRNIARGGRVKTAKYCAWEKQADAAMPSGIVK--LQGEVIAVY 58 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT--KGGRLELTITE 116 PDRRRRD+ N +KA D L + G DD Q+VD R+ K G + + E Sbjct: 59 VLGRPDRRRRDIANTEKAVGDTLVRWGVLEDDCQIVDIRLRWGRADEIKPGECRVELVE 117 >UniRef50_C4K4W1 Endonuclease RUS n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4W1_HAMD5 Length = 91 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIG---LAMPVKIRIE 60 I LP+PPS N Y+ R ++S + ++ A + + + G V + + Sbjct: 1 MRIELPFPPSVNHYWVRTARRVYLSEAAKRFQRLTAIEVAKSSMKQGHRSFPGDVSVALT 60 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDA 92 H+PD+R RD+DN K DALTKAG W DDA Sbjct: 61 -HLPDKRVRDVDNYPKGVLDALTKAGIWSDDA 91 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 26/141 (18%) Query: 2 NTYSITLPWPPSNNRYYRHNR----GRTHVSAEGQAYRDNVARIIKNAMLDIGL-AMPVK 56 + S +P P R + R + +Y +A AM L V Sbjct: 5 DPVSFLVPGEPVGKGRPRIGKVGNHARMFTPQKTASYEGLIALAGTEAMAGRTLLEGAVM 64 Query: 57 IRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + + + ++ D+DN+ KA +D L W DD QVVD Sbjct: 65 VEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGLNGV-VWKDDVQVVDA 123 Query: 98 RVVKMPVTKGGRLELTITEMG 118 V K + + I + Sbjct: 124 FVRKRYGEV-PGVHVRIVPLE 143 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 28/146 (19%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAMLDIGL-AMPV 55 M I + P R R + E + +R + +I+ A L P+ Sbjct: 1 MIYQKIVINLEPKAQSRPRFARCGRGVVAYEKKEMRVWRAKCSELIEEAFRAEELMEGPL 60 Query: 56 KIRIECH--MPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 KI + + P ++ D+DN KA D++T + DD QV Sbjct: 61 KIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSMTGV-IFKDDGQV 119 Query: 95 VDYRVVKMPVTKGGRLELTITEMGNE 120 V+ R K+ K R+E I EM + Sbjct: 120 VECRARKLYSLK-PRIEFEIKEMLDN 144 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 2 NTYSITLPWPP-SNNRYYR-HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 +P+ P S N ++R G ++S G+ +RDNV IK VK+++ Sbjct: 1 MKQRFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKLYKYKT-YEKSVKVKL 59 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 + + D+R RDLDN K D+ ++DD Q+ K + + E+ Sbjct: 60 DLYFADKRTRDLDNYFKGILDSFKG-FLYVDDKQIDKIEATKHIGAGKNYFIIEVEELQ 117 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%) Query: 2 NTYSITLPWPPSNNRYYRHNR--------GRTHVSAEGQAYRDNVARIIKNAMLDIGLAM 53 T P PPS N Y + ++ + E + Y+ N+ +IK + Sbjct: 3 EKLVFTSPIPPSVNHYLAYRTIIKNGKPMAMSYKTKEAKDYQKNIIELIKKEVEKQRWVK 62 Query: 54 P------VKIRIECHMPDRRRRDLDNLQKAAFDALTKAG-FWLDDAQVVDYRVVKMPVTK 106 + + + P R D +N K DA+T W+DD Q+ + + K Sbjct: 63 SDNKFQHYYMDVVFYFP-RVDMDANNYFKCLADAITDTELVWIDDTQLCERVMGIYYDNK 121 Query: 107 GGRLELTITEMG 118 R+E+ I + Sbjct: 122 NPRMEIEIKPVN 133 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 27/144 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M I LP P R R T+ + +AY+ V ++ A + P+ Sbjct: 1 MEEMRIILPIEPKPQSRPRFARRGNYVQTYEDSAMRAYKQKVKVYLRKAKPKLIEKGPIM 60 Query: 57 IRIECHMPDR---------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + ++ ++ DLDN KA DA + +D Q+ Sbjct: 61 AHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAVTDAAEGI-LYKNDGQIA 119 Query: 96 DYRVVKMPVTKGGRLELTITEMGN 119 K+ + R E+ I + Sbjct: 120 VMVCQKLYSMRQ-RTEIEIMSLEE 142 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 22/136 (16%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIEC 61 + P R RG + ++ +AY + + +PV + +EC Sbjct: 1 MIEFCVFGDPRGKGRPRF-RGHAYTDSKTRAYERMIQGAFLQSGESMFPEKVPVGVEVEC 59 Query: 62 HMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + ++ D DN+ K DAL + DD QV D + K Sbjct: 60 YFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALNGLA-YKDDTQVSDMIIRKR 118 Query: 103 PVTKGGRLELTITEMG 118 G + + I E+ Sbjct: 119 YGRNEGYIRVRIWEVK 134 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 10/125 (8%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M + LP+P S NRY+R R R SAE AYR+ V RI + A + V + + Sbjct: 56 MRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGA-MPSEGAVAVYVR 114 Query: 61 CHMPDRRRR-------DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK-MPVTKGGRLEL 112 + DLDN K DAL + +D QV GG L + Sbjct: 115 LIPKANKDGGANKTVIDLDNALKVTLDALQGVA-YHNDRQVRRIAADYADEPVAGGGLAV 173 Query: 113 TITEM 117 + E+ Sbjct: 174 EVGEL 178 >UniRef50_C0QUS6 Crossover junction endodeoxyribonuclease RusA (Hollidayjunction nuclease rusA) (Holliday junction resolvase) n=1 Tax=Persephonella marina EX-H1 RepID=C0QUS6_PERMH Length = 148 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%) Query: 1 MNTYSITLPWPPSNNR-----YYRHNRGRTHVSAEGQAYR-DNVARIIKNAMLDIGLAMP 54 MN Y ++ P NR G+ ++ + + + + ++ L P Sbjct: 1 MNIYFLSFIPPSKANRVKINLRAFSKSGKRYIVPKDVSLKINRAIWELQKQSSGEPLKDP 60 Query: 55 VKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 V+I+I+ +PDRRRRDLDN+ K D L AG DD + + K + + + + Sbjct: 61 VEIKIDFILPDRRRRDLDNIMKTLGDCLVYAGIIEDDNLIFKQTLEKHIIKGKEGVIIRL 120 Query: 115 TEMGN 119 + Sbjct: 121 KKYNE 125 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 25/136 (18%) Query: 4 YSITLPWPPSNNRYYRHNRGR----THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 IT+P P R R T+ E + Y VARI K ++ + +P+++RI Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKVITYTPPENKKYEKEVARIYKQSIGVLYTDIPLRVRI 60 Query: 60 ECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV 100 P ++ DLDN+ K D L + DD QV + Sbjct: 61 LAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLNGVA-YTDDKQVTSLEIE 119 Query: 101 KMPVTKGGRLELTITE 116 K+ + + + I E Sbjct: 120 KVYSDE-PCVVVYIAE 134 >UniRef50_O52945 Plasmid PLS32 DNA for thymidine kinase, replication protein, complete cds n=3 Tax=Bacillus subtilis RepID=O52945_BACSU Length = 185 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 12/131 (9%) Query: 1 MNTYSITLPWPPSNNRYYRHN---RGRT-----HVSAEGQAYRDNVARIIKNAMLDIGLA 52 M + + P PPS N Y + GR + S E + Y+ +K+ M + Sbjct: 1 MKSLRLVSPLPPSVNNYLSYKVSSNGRRKFVQAYPSEETKIYKSFFTDYVKDQMNEQEWE 60 Query: 53 MPVKIRIEC----HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG 108 P K ++ DR+R+D +N K FD T+AG +LDD + ++ Sbjct: 61 QPEKGKLVFVKIKFFLDRKRKDPNNFLKVPFDVFTEAGVYLDDDVALPVAERVYIDSQNP 120 Query: 109 RLELTITEMGN 119 RLE I E N Sbjct: 121 RLEFEIYEASN 131 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIE 60 TY +P P R R + + V L V + + Sbjct: 4 MTYDFDIPGEPVAKGRPRFYGYRAVTPQHTRDAEELVRNQFHMFYPHAEPLDGDVMMILM 63 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + + DLDNL+K DAL ++DD QV Sbjct: 64 FYKGRHGKPDLDNLEKLVKDALNGLA-YVDDQQVK 97 >UniRef50_Q87BV3 Uncharacterized protein PD_1345 n=13 Tax=Xylella fastidiosa RepID=Y1345_XYLFT Length = 153 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 2 NTYSITLPWP---PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 S+TLPWP S N H R+ + + Y + +AR + L + + + + Sbjct: 17 QMQSLTLPWPSKDLSPNAR-VHWTRRSKAVKQARGYAEVMARRAGWSGLSLPVEGRLDLW 75 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 I + P R D DN+ K D + A +DD + V + +++ V G++ +TIT Sbjct: 76 ISFYPPTRCLPDDDNMLARFKPYRDGIADA-LGIDDRRFVSHPLIEDEVRHAGQVVITIT 134 Query: 116 EMGNE 120 + + Sbjct: 135 GITQQ 139 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 22/135 (16%) Query: 3 TYSITLPWPPSNNRYYRHNR--GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 S +P P + + +R GR ++ V I L PV IRIE Sbjct: 1 MVSFVIPGKPFAKQRHNFSRATGRAFTPKATVSFESTVRDIALPKFP-RPLEGPVSIRIE 59 Query: 61 CHM-----------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 P ++ DLDN++K+ D L + F DD+QV K Sbjct: 60 ATFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRIAF-ADDSQVARVVKEKRW 118 Query: 104 VTKGGRLELTITEMG 118 + + + +G Sbjct: 119 G-PVAQTVVVVEPLG 132 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 24/141 (17%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 M+TY+ + P R +R + + A+ + Y+ V I + ++ Sbjct: 1 MSTYTAVVLGDPVAQGRPRFSRQGGFVKAYDPAKSRDYKSYVRMIAAQHAPVTPVEGAIE 60 Query: 57 IRIECHMPDRR-------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + + + + D+ N+ K DAL ++ DD+Q+V Y Sbjct: 61 FSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKGV-WYKDDSQIVGY 119 Query: 98 RVVKMPVTKGGRLELTITEMG 118 V+ + R+E+ + E+ Sbjct: 120 GVLGKWYDERPRIEIMMRELE 140 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 21/124 (16%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIE 60 +T+P + R GR A+ ++ +A + +AM L PV + IE Sbjct: 1 MVVVVTIPGEVTGKGRPRIWNGRAVTPAKTRSKEGVIASLAMDAMGGCDPLTGPVLVTIE 60 Query: 61 CHMPD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVK 101 +P ++ DLDN+ K DA+ + DDAQ+ K Sbjct: 61 AVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVNGI-VFADDAQITHIIASK 119 Query: 102 MPVT 105 Sbjct: 120 RYGV 123 >UniRef50_B8HN12 Endodeoxyribonuclease RusA n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HN12_CYAP4 Length = 130 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 ++ L P + RH+ ++++ + ++++ + + + + IE Sbjct: 17 QEITLHLTGPVTPKARPRHHGNQSYLPGRYRQWKEDAIAELSQQYEGEPIPQAI-VTIEI 75 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLELTITEM 117 R DLDN+ A DAL +AG +DD + + +P G ++ I+++ Sbjct: 76 --LGSARGDLDNISGAVLDALVQAGVLVDDRISCIPRLEICHVPGKIQG-AKIQISQL 130 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 11/105 (10%) Query: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR----------RRRDLDNLQ 75 + + + R + + D + P+++ + + + D+DN+ Sbjct: 50 YEPEKLKKTRALLMERLDEHKPDEPMHGPLRLVVTWCFKKKGKHVDGEYKTTKPDVDNML 109 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 K D +T+ GFW DD VV K + + I EM + Sbjct: 110 KLLQDCMTRLGFWDDDRFVVSLISEKYWADV-PGIYIEIKEMNQD 153 >UniRef50_A7VTC7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VTC7_9CLOT Length = 124 Score = 84.9 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 4 YSITLPWP-PSNNRYYRHNRGRTHVSAEGQA-YRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + P N Y R H +A+ + + I ++ PV +R Sbjct: 1 MKFVILGTLPGLNEYISAERSNRHSAAKMKKQMEYAIGMIARSQHRKAHFKRPVVMRYLW 60 Query: 62 HMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELTITE 116 DRRR DLDN+ K DA AG D Q +V + K R+E+ I E Sbjct: 61 VEKDRRR-DLDNVAFAKKFIQDAFVHAGILEGDGQRHIVGFTDSFSVDHKNPRVEIEIEE 119 Query: 117 MGNE 120 + ++ Sbjct: 120 ISHD 123 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 35/154 (22%) Query: 1 MNT-YSITLPWPPSNNRYYRHNRGRT--------HVSAEGQAYRDNVARIIKNAMLDIGL 51 MN + P R R + + ++ +A K+ Sbjct: 1 MNKPIVFFVSGDPKGQPRPRAFARRVGNKFVARVFDAGTAEGWKSRIAVAAKSLTPAQPY 60 Query: 52 AMPVKIRIECHMPDRR----------------------RRDLDNLQKAAFDALTKA-GFW 88 PV++R+ P + + D DNL KA DA+T+ G+W Sbjct: 61 TDPVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKAVLDAMTQLGGWW 120 Query: 89 LDDAQVVDYRVVKMPVTK---GGRLELTITEMGN 119 DD QV V K V+ + +++++ Sbjct: 121 GDDQQVASLAVCKSYVSTIQLHPGVNISVSQCNQ 154 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 83.8 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 27/145 (18%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLD--IGLAMP 54 M T+P P + + +R +T+ E +Y + V A Sbjct: 5 MKQIRFTIPGQPFGKQRPKFSRAGAYVKTYTPKETTSYENLVKLFYNEAAKGKMFPEGAM 64 Query: 55 VKIRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVV 95 + +RI + ++ D DN+ K D+L + DD+ VV Sbjct: 65 LDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIVCDSLNLVA-YHDDSAVV 123 Query: 96 DYRVVKMPVTKGGRLELTITEMGNE 120 D +V K ++ R+++ I +G + Sbjct: 124 DAQVRKFY-SETPRIDVMIKVVGPD 147 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 33/147 (22%) Query: 3 TYSITLPWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 T+P P + R +R + + A+R V +KN +K+ + Sbjct: 1 MVKFTIPIEPKPQKRPRFSRWSGAYEDKDMMAWRKQVTDYVKNNYEGPYFDDGLKVDVTF 60 Query: 62 HMPD------------------------------RRRRDLDNLQKAAFDALTKAG-FWLD 90 ++ ++ DLDNL+KA +D+++K+ W D Sbjct: 61 YLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLDNLEKAVYDSISKSEVVWTD 120 Query: 91 DAQVVDYRVVKMPVTKGGRLELTITEM 117 D +V++ K+ + R+E+ I E+ Sbjct: 121 DNIIVEHTTRKLY-SPNPRIEVKINEL 146 >UniRef50_C5VNX0 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VNX0_CLOBO Length = 209 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 13 SNNRYYRHNRGRTHVS-------AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD 65 +N + +GR + Y + +A + +I + ++ + Sbjct: 17 KSNFKLSNTKGRAILPYNSGKYHDRYGVYEELIAYEARLQNPNIFFTESLIAILKVYYKS 76 Query: 66 -RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 +R D N+ K+ FD + K+G ++DAQ+ + + +K R EL + Sbjct: 77 QKRHPDTTNIPKSIFDGIEKSGLIINDAQIRHLIIEEHYDSKNPRFELELY 127 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 82.6 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 21/133 (15%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM 63 + + R RG + Y V + L +K+ I + Sbjct: 1 MKVVVTGKIRGKARPRVCRGHAFTPKDTVQYEKLVRDCYQEQ-DGRYLEGSIKVLIVAYY 59 Query: 64 PD-------------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 R++ D DN+ K D+L + DDA V D+RV+K Sbjct: 60 KIPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLNGIA-YKDDAYVADFRVIKEYT 118 Query: 105 TKGGRLELTITEM 117 + R+E ++E+ Sbjct: 119 EELERVEFELSEV 131 >UniRef50_Q9PCT9 Uncharacterized protein XF_1666 n=1 Tax=Xylella fastidiosa RepID=Y1666_XYLFA Length = 137 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 2 NTYSITLPWP---PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 S+TLPWP S N H R+ + + Y + +AR L + + + + Sbjct: 17 QMQSLTLPWPSKDLSPNAR-VHWTRRSKAVKQARGYAEIMARRAGWGGLSLPVEGRLDLW 75 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 I + P RR D DN+ K D + A +DD + V + +V+ GG + + IT Sbjct: 76 ISFYPPTRRLPDDDNMLARFKPYRDGIADA-LGIDDRRFVSHPLVEDDRRTGGEVVVRIT 134 Query: 116 EMG 118 + Sbjct: 135 GIE 137 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 81.8 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 18/132 (13%) Query: 3 TYSITLPWPPSNNRY------YRHNRGR------THVSAEGQAYRDNVARIIKNAMLDIG 50 + P PPS N Y G+ + ++E + Y+ + +K + Sbjct: 21 ILKLVSPIPPSVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKKYKKEFIKYVKEEVRKQK 80 Query: 51 LAMPVKIRIECHMP-----DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 + + DR +D N K DAL ++DD ++ + Sbjct: 81 WDITCTKDKHFYFDTIFHFDRVDKDEQNYYKCLCDALNGLA-YIDDRNILTRCFKIDYDS 139 Query: 106 KGGRLELTITEM 117 R+E+TI + Sbjct: 140 INPRIEITIHPV 151 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 81.4 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 47/135 (34%), Gaps = 23/135 (17%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSA---EGQAYRDNVARIIKNAMLDIGL-AMPVKIRIEC 61 ITL P R V+ AY+D + + M L P +++ Sbjct: 2 ITLNIPVEPMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQLYTGPTVVKVLF 61 Query: 62 HMPDRR-----------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 MP + + D+DNL K FDAL K W DD QV K+ Sbjct: 62 SMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTA-WHDDNQVFMVIGAKVYG 120 Query: 105 TKGGRLELTITEMGN 119 K +E+ I + Sbjct: 121 -KEPGIEVQIMGLAE 134 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 81.4 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 12/125 (9%) Query: 3 TYSITLPWPPSNNRY-------YRHNRGRTHVSAE--GQAYRDNVARIIKNAMLDIGLAM 53 Y I P +N Y + + + ++ + + Y N + Sbjct: 1 MYIIRGQIPSKSNCYKIVSHFDPKTRKTHSSLAKQEVLKEYEKNFYIQCPE--RGRMIEG 58 Query: 54 PVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 ++R + + + +R DLDN K D L G +D Q V + K K R+E Sbjct: 59 YFRLRAKVYY-NSKRPDLDNSLKILLDCLQMTGTIKNDRQCVYIEIEKFVDRKEPRVEYE 117 Query: 114 ITEMG 118 IT + Sbjct: 118 ITPVE 122 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 50/157 (31%), Gaps = 43/157 (27%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG----RTHVSAEGQAYRDNVARII----KNAMLDIGLA 52 +N +P P + R R RT+ A+ Y D V K + + Sbjct: 3 VNCIKFVIPGEPQSKERPRTVRRAGGVRTYTPAKTHRYEDIVRYFAVYARKEHKISEPIN 62 Query: 53 MPVKIRIECHMPDRR-------------------RRDLDNLQKAAFDALT---------- 83 + I+ + + + D DN+ K FD + Sbjct: 63 SQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMNPKMKLNKALH 122 Query: 84 -----KAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + GF+ DD +V + V K +E+T+T Sbjct: 123 KKMVLQDGFYEDDKLIVTHSVEKWYSM-HPHVEVTVT 158 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 42/146 (28%), Gaps = 29/146 (19%) Query: 2 NTYSITLPWPPSNNRYYRHNR-----GRTHVSAEG----QAYRDNVARIIKNAMLDIGLA 52 S +P P+ R R + + +R V L Sbjct: 3 QRLSFFIPGVPAPGGSKRFVGIGKKTKRAILVDAAGQKNKDWRTAVGWAAHEHFKGEVLT 62 Query: 53 MPVKIRIECHMPDRR------------------RRDLDNLQKAAFDALTKAGFWLDDAQV 94 +++ MP + R D L ++ DALT W DDAQV Sbjct: 63 GALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDALTGI-VWRDDAQV 121 Query: 95 VDYRVVKMPVTKG-GRLELTITEMGN 119 VD K + I E+ + Sbjct: 122 VDGGQKKRYADSCSAGCLVEIEELAS 147 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 1 MNTYSITLPWPPSNN---RYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M + + + P S N R + + + L +++ Sbjct: 1 MIEFFMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQV 60 Query: 58 RIECHMPDR----------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 + P + + D DNL KA +D +T+ G+W DD Q+ K + Sbjct: 61 VTKWCFPIKAKHHDGEPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWAQR- 119 Query: 108 GRLELTITEMG 118 + + I E+ Sbjct: 120 PGIYVKIEEVK 130 >UniRef50_C7RH80 Endodeoxyribonuclease RusA n=1 Tax=Anaerococcus prevotii DSM 20548 RepID=C7RH80_ANAPD Length = 125 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 11/126 (8%) Query: 4 YSITLPWPPSNNRY-------YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVK 56 + L P+ + R + S + Y + R I + P+ Sbjct: 1 MKLVLYGNPATKKNSMQIFKNPRTGQPFLTQSKRYKDYARDCGRQITGKYKK-NIDYPIN 59 Query: 57 IRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ--VVDYRVVKM-PVTKGGRLELT 113 ++ + + R DL NL A D L+ G DD VV + ++ + R+E+ Sbjct: 60 LKCVYYRKTKHRVDLTNLLAATCDILSDCGVIKDDNCKIVVSHDGSRVKYDKECPRVEIE 119 Query: 114 ITEMGN 119 I +M Sbjct: 120 IEKMNE 125 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 20/112 (17%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC-- 61 Y +T+P R GRT A+ ++ R + L P+ + + Sbjct: 40 YRLTIPGLLRAKGRPRFGNGRTFTYAKTVQAEKHIQRHAIEQIGKPCLTGPLHVSLMINI 99 Query: 62 -HMPD----------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVD 96 P R D+DN K A DAL W DDAQ+VD Sbjct: 100 APPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNGIA-WKDDAQIVD 150 >UniRef50_A6LQD4 Endodeoxyribonuclease RusA n=34 Tax=Clostridium RepID=A6LQD4_CLOB8 Length = 232 Score = 79.9 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%) Query: 13 SNNRYYRHNRGRTHVS-------AEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD 65 +N + GR + Y +A + +N DI + + + + Sbjct: 16 KSNFKLHNLNGRAILPHSSGKYHDRYALYEQEIALLARNQNPDIVFSESLIALLRVYYKS 75 Query: 66 -RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 +R D N+ K+ FD + K+G ++DAQ+ + + R EL + Sbjct: 76 EKRHPDTINITKSIFDGIEKSGLIINDAQITKIFTEEYYDKENPRFELEL 125 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 21/128 (16%) Query: 7 TLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR 66 + R RG + Y V K L +K I + Sbjct: 3 VVTGKIRGKARPRVCRGHAFTPKDTIEYEKLVRECYKKQ-DGRYLEGAIKALIIAYYKIP 61 Query: 67 -------------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 ++ D DN+ K D+L + DD+Q++D R+ K + Sbjct: 62 KSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVA-YKDDSQIIDLRIKKEYTEEL 120 Query: 108 GRLELTIT 115 R+E Sbjct: 121 ERVEFEFR 128 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 18/132 (13%) Query: 3 TYSITLP---WPPSNNRYYR----HNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPV 55 LP P + ++ + + + + + RD ++ + L P+ Sbjct: 7 MIEFFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPI 66 Query: 56 KIRIECHMPD----------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 ++ ++ P + D DNLQK D +T+ GFW DDAQV + K Sbjct: 67 RLTVKWLFPKIKGSTNGQYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWAD 126 Query: 106 KGGRLELTITEM 117 G + + + E+ Sbjct: 127 TVG-IYVKVEEL 137 >UniRef50_C9KYW6 Crossover junction endodeoxyribonuclease RusA family protein n=2 Tax=Bacteroides RepID=C9KYW6_9BACE Length = 147 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 2/100 (2%) Query: 21 NRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFD 80 + R + + Y + K ++ K+ I + R DLDN K D Sbjct: 25 GQKRIIKNDRIREYEKSFCLQCKK-YRGKRISGRFKLFIRVWHGN-IRFDLDNALKTILD 82 Query: 81 ALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 L +D+ + K + R+E + E+ + Sbjct: 83 CLQMVEAITNDSLCFEIHAEKRIDRRNPRVEFGMEEINEQ 122 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 78.7 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 2/93 (2%) Query: 14 NNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIECHMPDRRRRDLD 72 R G + + + PV++ E M R R DLD Sbjct: 2 PKGRPRVYNGHAMTPKRTVRAEERLFAEFRLKYPQAKPYQCPVRLEAEFWMSHRGRPDLD 61 Query: 73 NLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 NL K D+L ++DDAQVV+ K Sbjct: 62 NLLKLVLDSLNGVA-YVDDAQVVESHACKRMPD 93 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%) Query: 13 SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP-------- 64 N + + +A R + + + D PV++ ++ P Sbjct: 27 VVNGKPVF-----YEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLMVKWCFPVTGKHKNG 81 Query: 65 --DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG 118 + D DNLQK D +T FW DDA V V K + + I E+ Sbjct: 82 EYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV-PGIFIAIEELS 136 >UniRef50_B9TAJ4 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TAJ4_RICCO Length = 499 Score = 78.4 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%) Query: 25 THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK 84 +++ G +R VA I+ + + + M DRR DLDN KA DAL Sbjct: 1 MYITKSGVDFRKQVAEIVAERSALKFGTSRLFMAVRLCMRDRRASDLDNRMKALCDALEH 60 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGG 108 AG + DD Q+ + +V+ P+ KGG Sbjct: 61 AGVFDDDEQIDELVIVRGPIVKGG 84 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 22/123 (17%) Query: 8 LPWP-----PSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAML-DIGLAMPVKI 57 LP P P R S + + +RD V I A+ LA PV Sbjct: 87 LPGPQGSKTPIGYGRSRTTGKTIPLMRESSTKVKPWRDKVQAAITAALHTSAPLAGPVYA 146 Query: 58 RIECHMPDRRR------------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 I MP R D+D L+++ +DA+TKA W DD V++ K+ Sbjct: 147 HITFTMPKPVRAPKRRRTYPAVTPDIDKLERSTYDAITKAAAWKDDGCVIESHARKVYPD 206 Query: 106 KGG 108 + Sbjct: 207 EHP 209 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 78.0 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 22/114 (19%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR--------------- 67 G + + + Y+ +V + + L+ P+++ +E + ++ Sbjct: 2 GHAYDPTKSRNYKQHVKSVASE-LNIEPLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKV 60 Query: 68 ----RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + D+DN K+ DALT W DD Q+V+ V K + R+E+ E+ Sbjct: 61 RPTVKPDVDNYYKSVSDALTGI-LWEDDNQIVEIHVGKWYSDQ-PRVEIEAEEI 112 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 27/127 (21%) Query: 12 PSNNRYYRHNRG----RTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR- 66 P + R + T++ + ++ ++N M + L +KI +E + Sbjct: 18 PMGSPRPRFSTKGRYAHTYMPTKYTEHKK----YLQNQMPKLNLENALKIELEFYFTPPK 73 Query: 67 ----------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 + D+DNL K DA W DD Q+ + K + ++ Sbjct: 74 SWSKKKKTQAIGQLKVTKPDIDNLMKTVLDACNNY-LWKDDNQIAEITSSKRYGIE-PKI 131 Query: 111 ELTITEM 117 + I E+ Sbjct: 132 IIRIEEI 138 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 27/127 (21%) Query: 12 PSNNRYYRHNRGRT----HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMP--- 64 P + R ++ ++ I+ M + L +KI ++ + P Sbjct: 14 PMGSPRPRFRNTGRFVQTYMPTAYTNHK----AYIQGQMPKLNLERALKIELDFYFPLLK 69 Query: 65 --------------DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 + D+DNL K DA W DD Q+ + K + ++ Sbjct: 70 SWSKKKKSEMVGQYKVTKPDIDNLIKTVLDACNGH-VWKDDNQITEITSSKRYGLE-PKI 127 Query: 111 ELTITEM 117 + + E+ Sbjct: 128 IMRVEEV 134 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 36/149 (24%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIE 60 + T+ PP R R T+ A+ Y D V N+ P+ ++I Sbjct: 1 MRVNFTIEGPPIGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKGIFDKDEPLDVKIM 60 Query: 61 CHMPDR-------------------RRRDLDNLQKAAFDALT---------------KAG 86 + ++ D DN+ K D + G Sbjct: 61 AYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGMNPKMRRDKRLHKMVEVMRG 120 Query: 87 FWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 + DD QV V K + R+++ I Sbjct: 121 VYHDDKQVTTLLVKKRYAER-ARVDVRIK 148 >UniRef50_B7KYT0 Endodeoxyribonuclease RusA n=2 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KYT0_METC4 Length = 187 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 + + I P PPS N Y + G + +A+R A +I +A P + I Sbjct: 32 VPSVEIRFPLPPSTNSLYFNVAGGRRKTPRYRAWRQQAALLIDVQRPG-RMAGPCDVTIY 90 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 D DN K DA AG DD Q R + + + +T Sbjct: 91 LPPFS---GDADNRIKPCLDAAVAAGVLADDGQRYVRRALVEVDRAATEVRMVLT 142 >UniRef50_UPI00016C6946 putative endonuclease n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C6946 Length = 115 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Query: 30 EGQAYRDNVARIIKNA-----MLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK 84 + + Y + V+ A + + I+ + PD+R RD+ N K+ D + K Sbjct: 9 KFREYEELVSWSSVKAISTSKYKNNKFNENLTTVIKLYFPDKRNRDIHNYPKSICDGIEK 68 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 +G +D + ++ + R+E+ + Sbjct: 69 SGIIKNDKLLKPVVIMDFIDKENPRVEIELYPASE 103 >UniRef50_UPI0001C369A4 prophage Lp2 protein 24 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C369A4 Length = 165 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 2 NTYSITLPWPP-SNNRYYRHNRGRTHVSAEGQA-YRDNVARIIKNAMLDIGLAMPVKIRI 59 Y + + N Y NR H + + + V I+ + + + PV ++ Sbjct: 42 MEYKLVIFGRLDGLNDYTAANRTNPHKGGKMKKDNEETVIWAIRQQLRRLHIEKPVFLKF 101 Query: 60 ECHMPDRRRRDLDNLQ----KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLELT 113 + P++RR D DN+ K DAL K G DD V+ + R+E+ Sbjct: 102 SWYEPNKRR-DHDNVSSFGRKVIQDALVKCGVLKDDGWDYVIGFTDQFFCDRNEPRIEVL 160 Query: 114 ITE 116 I E Sbjct: 161 IEE 163 >UniRef50_A9W5I1 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens PA1 RepID=A9W5I1_METEP Length = 155 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 ++ +I LP PPS N + H GR S A+ +V + + + + Sbjct: 21 VDEVTILLPVPPSVNALHDHAPGRPVRSKAYSAWIHDVGWRLIEQRPG-RVPGAYIL-LL 78 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM 102 + DLDNL KA D L G +D + + Sbjct: 79 AVPEAETKADLDNLSKATRDLLQAHGLIDNDRKARREVLDWH 120 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 42/130 (32%), Gaps = 20/130 (15%) Query: 9 PWPPSNNRYYRHNR-GRTHVSAEGQAYRDNVARIIKNAM--LDIGLAMPVKIRI------ 59 P R R GRT+ + + + PV + I Sbjct: 17 PAEIVGKGRPRFTRSGRTYTPRKTKRAELAIRDEFLRVSGDRWAKFRGPVSVHIIYGREL 76 Query: 60 -------ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG---R 109 D + DLDN K DAL F +DD+QVV+ + K GG Sbjct: 77 AKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAF-MDDSQVVNMTIAKSARRPGGTGNL 135 Query: 110 LELTITEMGN 119 L++ I+ Sbjct: 136 LQIEISYYNE 145 >UniRef50_Q88UN4 Prophage Lp2 protein 24 n=2 Tax=Lactobacillus plantarum RepID=Q88UN4_LACPL Length = 126 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 10/124 (8%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEG-QAYRDNVARIIKNAM-LDIGLAMPVKIR 58 MN I PS N Y + R + +A + Y + + + + + P K++ Sbjct: 1 MNKVVIKGEL-PSLNEYIKAERANRYAAANLKKRYTALCSVYARASRNSGVEFSWPCKLK 59 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDA--QVVDYRVVKMPVTKGGRLEL- 112 + + R+ D DN+ K D KAG +D + ++ + R+E+ Sbjct: 60 FTWYTKNNRK-DADNIAFAKKFVLDGFMKAGLLGNDNRKHITGFQDEFAVDKRNPRVEID 118 Query: 113 TITE 116 ITE Sbjct: 119 EITE 122 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 29/144 (20%) Query: 1 MNTYSITLPWPPSNNRYYRHNRG------RTHVSAEGQAYRDNVARIIKNAMLDIGLA-- 52 M + + +P P + R ++ + Y + + +N L Sbjct: 12 MQSVTFQVPGKPQGKARAKTVRNKSTGNIHSYTPEKDMLYENYIKAQFQNRANGFYLERG 71 Query: 53 MPVKIRI--ECHMPDR-----------------RRRDLDNLQKAAFDALTKAGFWLDDAQ 93 PV +RI P ++ D+DN+ K DAL + DD Q Sbjct: 72 KPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIVKVVADALNGVA-YHDDTQ 130 Query: 94 VVDYRVVKMPVTKGGRLELTITEM 117 + K G L++T+ E Sbjct: 131 IAMVIAAKTYSAMEG-LDITVEEY 153 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRR-----DLDNLQKA 77 G T++ A + Y+ +A + + V + C + + D+DN K Sbjct: 5 GSTYMPAAYKVYQKAIAAALPKLDSQYTGELEVILEFVCKPIAKSKFTTPMGDVDNFAKG 64 Query: 78 AFDALTKAGFWLDDAQVVDYRVVKMPVT--KGGRLELTITEM 117 D LT G+W DD Q++ V K + + + I E+ Sbjct: 65 VMDTLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_A6F0M3 Putative uncharacterized protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F0M3_9ALTE Length = 141 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 23/132 (17%) Query: 2 NTYSITLPWP-PSNNRYYRHNRGRTHVSAEGQA---YRDNVARIIKNAMLDIGLA----- 52 I LPWP P+ N R H S + +A YR A+ G Sbjct: 5 EKLEILLPWPLPALNP-----NSRGHWSKKARAADMYRYTCKLASIEAIQKSGHDTGALQ 59 Query: 53 ------MPVKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP 103 + + ++ + P+RR RD DN+ K+ D L A D + + Sbjct: 60 DLVKAGGDIHVFLDFYPPNRRARDDDNIIAAFKSGRDGLADALNIDDRHFRTHPFLHRDE 119 Query: 104 VTKGGRLELTIT 115 V G++ + +T Sbjct: 120 VVHMGQVRVVVT 131 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 32/142 (22%) Query: 1 MNTYSITL--------PWPPSNNRYYRHNRG-RTHVSAEGQAYRDNVARIIKNAMLDIGL 51 M I + P + R + G T++ A ++ VA + + + Sbjct: 1 MTETRIEIFYLKNDRNLGNPKGSSRPRFSGGGHTYMPAPYVKHKKFVAD----QLPHLMI 56 Query: 52 AMPVKIRIECHM-----------------PDRRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 P+++ +E + P + D+DNL K DA W+DD + Sbjct: 57 DKPIRLTVEFYFKPSKSWPKYKKEACIGNPHTIKPDIDNLLKTILDAGNNL-LWVDDTLI 115 Query: 95 VDYRVVKMPVTKGGRLELTITE 116 + R K + R LTI E Sbjct: 116 YEIRTFKKYA-ETARTVLTIIE 136 >UniRef50_C4GFT5 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GFT5_9NEIS Length = 145 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 12/121 (9%) Query: 1 MNTYSITLPWP-PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 M I LP+P P +H R V R + + G ++I Sbjct: 25 MKQNKIILPYPNPVLMPNRKHGRHWASVQQAKVKARQEAFLLSGSLNYTGG-----GLKI 79 Query: 60 ECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKM--PVTKGGRLELTI 114 + PD R+RDLDNL K A D + KA +DDAQ + K+ K R+E+ + Sbjct: 80 TFYTPDARKRDLDNLLAAMKPALDGMAKA-IGVDDAQFRPLLIDKVKAESRKDARVEIEL 138 Query: 115 T 115 Sbjct: 139 M 139 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 31/147 (21%) Query: 2 NTYSITLPWPPSNNRYYRH--------NRGRTHVSAEGQAYRDNVARIIKNAMLDIGL-A 52 T I LP P +R R +H + +AY + M L Sbjct: 3 ETLIIRLPGAPRGKGRHRAQLVHRGGVARIHSHPDQKTEAYESALRLAAGAVMRGRALLT 62 Query: 53 MPVKIRIECHMPDR-------------------RRRDLDNLQKAAFDALTKAGFWLDDAQ 93 P+++RI MP + D DN+ K DAL W DDA Sbjct: 63 GPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSDALNHV-VWADDAS 120 Query: 94 VVDYRVVKMPVTKGGRLELTITEMGNE 120 VVD V K + L + +T + + Sbjct: 121 VVDGLVRKFYG-ETPELVIQVTALEPQ 146 >UniRef50_Q1GG05 Putative uncharacterized protein n=2 Tax=Ruegeria sp. TM1040 RepID=Q1GG05_SILST Length = 118 Score = 71.4 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M + +I L WP + + + V A + + A + V + Sbjct: 1 MKSTTIRLSWPR--RALWDNEKASHMVRAAAKRTQRKEAWALALEAKWPRDPAAV-LTFR 57 Query: 61 CHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 PDRRRRD NL KAA D + A D + PV KGG + + I Sbjct: 58 FCPPDRRRRDTHNLPATMKAAIDGIADAMKVDDVGFRCVFPTEFGPVEKGGAVYIEI 114 >UniRef50_B6W9X0 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W9X0_9FIRM Length = 128 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%) Query: 19 RHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAA 78 R R S E Y++ +K + L+ P+ ++ +MP R DL NL +A Sbjct: 25 RGKRKWIVPSKEFINYQNICLYQVKK-KDKLQLSTPINLKCLYYMPTNHRVDLVNLLEAT 83 Query: 79 FDALTKAGFWLDDAQ--VVDYRVVKM-PVTKGGRLELTITEMGNE 120 D L +A DD + + ++ R+E+ + E +E Sbjct: 84 CDILVEAHVIGDDNSKIIKSHDGSRVLYDKDSPRVEIYLEEFIDE 128 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%) Query: 18 YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHM-------------P 64 ++ + + A PV +RI+ P Sbjct: 29 WKLKGCHVYTPQATIDEER----ALGQAYKGPRHEGPVSVRIDVFRVLPGSRPKRVLGEP 84 Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK--GGRLELTITEMG 118 D D+DN+ KA D L + DD QVV+ V K + G + +++ + Sbjct: 85 DTMTPDIDNIAKAVLDGLNGIA-YDDDKQVVELHVYKHDRERRVGDSVRISVEGVT 139 >UniRef50_Q2KZ60 Phage-related protein n=2 Tax=Bordetella avium 197N RepID=Q2KZ60_BORA1 Length = 123 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 43/123 (34%), Gaps = 8/123 (6%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLD-IGLA--MPVKIRI 59 S+ LPWPP +S + YR A+ V+I Sbjct: 1 MISLLLPWPPKELS-PNFRGHWASISRAKKVYRIAACLTTMRALRHAERFDRLGGVRITY 59 Query: 60 ECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 E P R D DNL KAA D ++ A ++D V KGG + +TI Sbjct: 60 EFCPPTARAYDRDNLAARMKAATDGISDA-LGMNDRGFHFAPVAIGSKEKGGLVRVTIES 118 Query: 117 MGN 119 + Sbjct: 119 LKE 121 >UniRef50_Q5YSM1 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YSM1_NOCFA Length = 144 Score = 71.0 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 22/136 (16%) Query: 1 MNTYSITLPW---PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 M I LPW P S N + +A+ + R+ V + A L +A + Sbjct: 1 MTVVRIDLPWTSPPLSMNDRGYTHGAAMAKAAKTREIRETVIALATQAKLPRLVAHA-AV 59 Query: 58 RIECHMPDRRRRDLDNL---QKAAFDALT-----------KAGFWLDDA----QVVDYRV 99 ++ D RRRD DNL K DALT G LDD + + Sbjct: 60 QLHYQPRDNRRRDTDNLIATLKPIADALTVSRASKRGTVPGYGLVLDDTPQWMSKPEPLI 119 Query: 100 VKMPVTKGGRLELTIT 115 +GGR+ + IT Sbjct: 120 HPAVKGEGGRMWIEIT 135 >UniRef50_B3WDE7 Putative uncharacterized protein n=3 Tax=Lactobacillus casei group RepID=B3WDE7_LACCB Length = 121 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 3 TYSITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRD----NVARIIKNAMLDIGLAMPVKI 57 I +P P + N+Y + RG A+ + R N + P+ Sbjct: 1 MNRIIIPLPLMTLNQYIKIERGNMFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLS- 59 Query: 58 RIECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGGRLEL 112 + + D+R D DN+ K FD + KA F +D +V+ R R+E+ Sbjct: 60 -FDWYWYDKRT-DPDNIAFQHKFIFDGMQKAEFLENDNWDHIVELRDRFFIDKANPRVEV 117 Query: 113 T 113 Sbjct: 118 E 118 >UniRef50_UPI00004C2387 hypothetical protein SpyoM01000040 n=1 Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C2387 Length = 132 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 12/115 (10%) Query: 12 PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDL 71 S+N + + + R P K+ + P +RR D Sbjct: 17 LSSNDRLHFRKSASI----TKGLRQLAKLKSNGLTKKHTKNNPCKVIVTVFTPTKRRFDP 72 Query: 72 DNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP-----VTKGGRLELTITEMG 118 N+ KA D T AG W DD + + V R+ + I EM Sbjct: 73 PNIYPTIKAILDGFTDAGVWDDDNHEIIKSLTFRYGGLSNVKGKYRIAIEILEME 127 >UniRef50_Q6AC63 Phage-related protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AC63_LEIXX Length = 127 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 17/120 (14%) Query: 5 SITLPW---PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 SI +P P S N V+ + +R+ A + + Sbjct: 10 SILIPLARDPLSLNLRL----HWRTVAKHTKIWREFAATQAAR----FPHLGCCTVTLTW 61 Query: 62 HMPDRRRRDLDNLQ---KAAFDALTKAGFWLDDA-QVVDYRVVKMPVTK--GGRLELTIT 115 H+ DRRRRD DNL KA D L AG LDD ++D + + +T+T Sbjct: 62 HVLDRRRRDADNLFRLCKALCDGLVDAGVTLDDTPHLMDKHCRILVEDRRLHPSAWMTLT 121 >UniRef50_D2U459 Phage V crossover junction endodeoxyribonuclease n=1 Tax=Arsenophonus nasoniae RepID=D2U459_9ENTR Length = 105 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 30/67 (44%) Query: 51 LAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 + V + + P RRDLDN KA D+LT AG W DDAQV V GG Sbjct: 1 MTTAVSLSLTLFPPTDHRRDLDNFVKAKQDSLTYAGIWQDDAQVKRLTVEWGAKIAGGSA 60 Query: 111 ELTITEM 117 IT Sbjct: 61 LAIITPY 67 >UniRef50_A5MC55 Putative uncharacterized protein n=2 Tax=Streptococcus RepID=A5MC55_STRPN Length = 137 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 16/117 (13%) Query: 15 NRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI-----GLAMPVKIRIECHMPDRRRR 69 N ++ + + R A N + D P K+++ + P R+ Sbjct: 16 NDRPHFHQK----AKITKFLRQLAAYEGNNVLRDYFGLPYREDKPCKVKVRIYPPTNRKY 71 Query: 70 DLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG----RLELTITEMGN 119 D N KA FD LT A W DD V M K G R+EL I E Sbjct: 72 DPPNWSPTSKALFDGLTDAKIWTDDNYNVIVSTEFMHGGKSGNKNYRIELEIYEYHE 128 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 21/135 (15%) Query: 4 YSITLPW---PPSNNRYYRHNRGRTHV--SAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 + +P P + YR + V S + + +RD V+++ + + V + Sbjct: 8 LTFFVPGIAAPQGSKNAYRRGQKIVLVESSKKVKPWRDTVSQVARFVC-KRPIDGAVTVA 66 Query: 59 IECHMPDRR------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTK 106 + MP + + DLD + +A DALT + DD+Q+V K Sbjct: 67 VHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIA-YADDSQIVRLTGSKRRAAP 125 Query: 107 GG--RLELTITEMGN 119 G +TIT Sbjct: 126 GEKTGAHITITPFME 140 >UniRef50_Q9AZ79 RUS n=6 Tax=root RepID=Q9AZ79_9CAUD Length = 139 Score = 68.3 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 16/122 (13%) Query: 12 PSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM------LDIGL---AMPVKIRIECH 62 P + + ++ R H + + ++ + L + + Sbjct: 18 PKSKKLILNSNDRMHFHQKAKIIQELKRITFNQVRNPLNSLKKLPLFDSTRTCSVTLTVF 77 Query: 63 MPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMP----VTKGGRLELTIT 115 P +RR D DNL KA D T++G W DD V TK RLE+ I Sbjct: 78 TPTKRRSDPDNLQPTLKAIMDGFTESGLWSDDNHEVVKFTKYQYGGLSGTKTYRLEVDIE 137 Query: 116 EM 117 E+ Sbjct: 138 EV 139 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 1 MNTYSITLPWPP-SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDI--GLAMPVKI 57 M + + PP S R+ Q ++ V + +K+ Sbjct: 1 MIPFEFIVEGPPVSLQTKNRN---------RLQEWKARVRSAAELYWPTEDSPSDKQLKL 51 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 I + + D+DN+ K DAL + DD Q++D K + ++ Sbjct: 52 SITYYYEN-TSPDVDNIIKPIQDALVGL-VYNDDDQIIDTSCGKRDINGSFKIR 103 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 11/102 (10%) Query: 26 HVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR----------RRDLDNLQ 75 + Y + +P+K+ + ++ R DLDNL Sbjct: 31 YDRRGTNNYSLKAQLMKNKPKECFEKNVPLKLSVTFFYAIKQKKRWWQWKTSRPDLDNLM 90 Query: 76 KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 K D +TK ++ DD+Q+V K+ K R+E+ ITE+ Sbjct: 91 KNLQDYMTKLRYYSDDSQIVWLEAKKVNDEKN-RIEIEITEV 131 >UniRef50_Q4EJG1 Gp63 n=7 Tax=root RepID=Q4EJG1_LISMO Length = 134 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 10/123 (8%) Query: 2 NTYSITLPWPPS-NNRYYRHNRGRTHVSAEGQAYRDNVAR-IIKNAM-LDIGLAMPVKIR 58 + I +P P + N Y RG +A+ + + +K AM + + P +I+ Sbjct: 11 TSNKIIIPLPLTDLNTYINKERGHRQAAAKVKKQMTYICASYVKMAMNHGVTFSTPCRIK 70 Query: 59 IECHMPDRRRRDLDNLQ---KAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKGG-RLEL 112 +P++R+ D DN+ K FD + +AGF +D + + + R+ + Sbjct: 71 FTWIIPNKRK-DPDNIAFAKKFIFDGMMQAGFIENDNLNFIEGFSDHFIIDKGEESRVIV 129 Query: 113 TIT 115 + Sbjct: 130 EVE 132 >UniRef50_Q9CIB4 Prophage pi1 protein 15 n=4 Tax=root RepID=Q9CIB4_LACLA Length = 158 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 8/112 (7%) Query: 16 RYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ 75 N + + + + + + P R + D N + Sbjct: 47 SRIAANNTKQRLRRIACRTAHEWLDQSEEVFEQFHEKHRCDVFVVIYPPKRFKYDPPNYE 106 Query: 76 ---KAAFDALTKAGFWLDDAQVVDYRVVKMP-----VTKGGRLELTITEMGN 119 KA D LT AG W DD V R TK ++EL + E+ Sbjct: 107 PTSKALIDGLTDAGIWNDDNYNVIRRTSFEHGGLSGDTKTWKVELVVKELTE 158 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 32/144 (22%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQ-------------AYRDNVARIIKNAMLDI 49 TL P N+ + R +G ++ Sbjct: 1 MIDFTLDLIP-PNKTAQQKGERIITPKDGSGQYILHYQKASLADIERAYCTLLVTHRPPQ 59 Query: 50 GLAMPVKIRIEC----------------HMPDRRRRDLDNLQKAAFDALTKAGFW-LDDA 92 LA V+ + P + D DN K D L GF+ DDA Sbjct: 60 PLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCDCLKTVGFFQRDDA 119 Query: 93 QVVDYRVVKMPVTKGGRLELTITE 116 Q+ D R++K + + + ++E Sbjct: 120 QIFDGRLIKGHGDR-PGIRVRLSE 142 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 27/136 (19%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSA--EGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + + P R RG A + + + + ++ + +++ + Sbjct: 16 IDVYIEGKPIPMPRPRLGRGIWFNPATRQLKEFSKKLQALLPEDGVVFPRGECLEVNLFF 75 Query: 62 H-----------------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYR 98 + + + D+DNL K DA+ + DD+QVV Sbjct: 76 YIRRPNSDYDGNKRINALKPGRANPFETVKPDIDNLAKFTLDAMQGI-VFHDDSQVVKLL 134 Query: 99 VVKMPVTKGG-RLELT 113 V K+ +GG R+++ Sbjct: 135 VYKLRGNEGGTRIKVR 150 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAML-DIGLAMPVKIRIEC 61 + PP + + R R + ++ V + + + + Sbjct: 4 RLEFIVDGPPVSQQTRRRER--------LRDWKRVVRQEAEKYWSSGQKATTGLIMLQIT 55 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 + D D+DN+ K DA+ ++DD QV D V K ++ ++E Sbjct: 56 YFYDSVAIDVDNIVKPIQDAIIGL-VYIDDDQVTDVLVRKRDLSGNFKVE 104 >UniRef50_A8HP85 Putative uncharacterized protein n=2 Tax=Caudovirales RepID=A8HP85_9CAUD Length = 109 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M +I P S N + +G+ + + + Y ++ + +K+ + Sbjct: 1 MIKLNIK---PLSINCAF---QGKRFKTKKYKQYEQECLLLLPRKVEIP--EGKLKVSLF 52 Query: 61 CHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGR-LELTITEM 117 + D DN K D L K + +D ++ +Y + K+ V KG +E I + Sbjct: 53 FGFSSKLA-DADNPVKCFIDILQK-KYGFNDNKIYEYSISKVDVKKGEEFIEFKIESL 108 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 36/151 (23%) Query: 2 NTYSITLPWPPSNNRYYR---------------HNRGRTHVSAEGQAYRDNVARIIKNAM 46 + TL P++ R R + S + + + + + I + Sbjct: 1 MRVAFTLRGEPASKANSREIVARKVRSKTDGTLKTRPMSIKSDKARNFERDALKQIPPSA 60 Query: 47 LDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTK-----------------AGFWL 89 + + PV++ ++ R DLD + D + G + Sbjct: 61 R-VRMTGPVRVILKIFYATER-PDLD--ESVILDVMQDRFRTVTVKGIERRELVYHGVYR 116 Query: 90 DDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 +D QV V R E+ I + + Sbjct: 117 NDRQVRQKFVFHGIDRVNPRAEVVIESLQEQ 147 >UniRef50_C5B0R6 Putative uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=C5B0R6_METEA Length = 145 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 6/108 (5%) Query: 2 NTYSITLPWPPSNN--RYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRI 59 + + LP P S N R G +S A+ + + +A + Sbjct: 23 DRVVLRLPVPVSVNDMHAPR-KGGGVRISDAYAAWMSDAGWRLTAQRPG-RIAGRY--TL 78 Query: 60 ECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 + +P DLDN K D L G +D + T Sbjct: 79 DLGLPRESGLDLDNAVKVTSDLLQLHGVIRNDRNAERIGIWWQDETPE 126 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%) Query: 27 VSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIEC-HMPDRRRRDLDNLQKAAFDALTK 84 ++ + + Y+ + + + I + D DLDNL KA DA+ Sbjct: 31 LTTQAKYYKPLIYEFFRKVWRGSRPAWGEFSVEIGMEFVGDPPWMDLDNLAKALLDAIKG 90 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 F DDAQV V + P + R+ + + ++ Sbjct: 91 YAF-HDDAQVARLLVERRPAERE-RIIIVVRKL 121 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 27 VSAEGQAYRDNVARIIK-NAMLDIGLAMPVKIRIECHM-PDRRRRDLDNLQKAAFDALTK 84 V+ + + ++ + + P ++ IE P D+D + KA DALT Sbjct: 13 VTTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEVARDPASPDHDVDGVAKAVLDALTG 72 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGN 119 + DD+QV V ++ + R+ +T M Sbjct: 73 V-VFHDDSQVERLLVTRVEGDR-PRIAVTARPMQE 105 >UniRef50_C7R1F1 Endodeoxyribonuclease RusA n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1F1_JONDD Length = 131 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 18/123 (14%) Query: 2 NTYSITLPWPPSNNRYYRHNRGR---THVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIR 58 +P + R + + +A R + ++ + P ++ Sbjct: 1 MKVDFLIP-----QAMILTSNQRLNPHVKAKKTKALRQ----LAESESRGLRGPTPCRVI 51 Query: 59 IECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQ-VVDYRVVK--MPVTKGGRLEL 112 DRRRRD N KA D + AG W DD ++ + + G + + Sbjct: 52 AWLGFQDRRRRDAPNWWPTIKALIDGMVDAGVWEDDNSTIIQGPDHRILDYRCQKGHVYV 111 Query: 113 TIT 115 +I Sbjct: 112 SIE 114 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 11/104 (10%) Query: 22 RGRTHVSAEGQAYRDNVARIIKNAMLDI-GLAMPVKIRIEC--------HMPDRRRRDLD 72 R T+ E A+ V AM +A+ + I D DLD Sbjct: 106 RHHTYTPKETAAFESAVRMAGAAAMRGREPIAVSLGIDAILAFDGDAGLWPTDNTDGDLD 165 Query: 73 NLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITE 116 NL KA DA+ + DD VV+ R+ K+ + L + Sbjct: 166 NLVKAVLDAVNGV-VFKDDRLVVEMRLAKIC-LPSPAIALRVRP 207 >UniRef50_D1GPV9 Phage protein n=2 Tax=Staphylococcus RepID=D1GPV9_STAA0 Length = 197 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 17/128 (13%) Query: 5 SITLPWPPSNNRYYR------HNRGRTHVSAEGQAYRDNVARIIKNAML---------DI 49 ++LP P S N+ Y G+ +S G+ R+++ ++ M + Sbjct: 6 RLSLPLPTSLNKLYVQQFSGGRFTGKKILSKAGKENREDIMINVERQMSLPVNIDWDYEY 65 Query: 50 GLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAG-FWLDDAQVVDYRVVKMPVTKGG 108 + + IE ++ R DLDN K D++ +G + +D +VV Sbjct: 66 TKDHYIYMDIEAYV-TRVNVDLDNTLKTLNDSIEASGLVFDNDKKVVPRFNRVYIEPSNP 124 Query: 109 RLELTITE 116 R+ELT T+ Sbjct: 125 RVELTFTQ 132 >UniRef50_B1BBK8 Putative uncharacterized protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BBK8_CLOBO Length = 132 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 6 ITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPD 65 P PS N R + +++ ++ + +I ++ + + Sbjct: 20 FKTPIHPSIN---VWAINRMTMRNMKSKWKEFGLWLVNKLGYENLHIEKFQITMKNYYGN 76 Query: 66 RRRRDLDN-LQKAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKGGRLELTI 114 RRRRD DN K D L ++G +DD + ++ R+E+ + Sbjct: 77 RRRRDNDNQSPKFLLDPLVESGMLVDDDYKHLNPLIIMGDYDKGNPRMEIIV 128 >UniRef50_B2I3P4 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3P4_ACIBC Length = 229 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 18/129 (13%) Query: 2 NTYSITLPWPPSNNRYYR-----HNRGRTHVSAEGQAYRDNVARIIK---NAMLDIGLAM 53 +I LP+ S N +R + + R +S + Y+D V + A+ + Sbjct: 76 QYITIKLPYGLSANEIWRATIDQNGKQRNSLSVGAKKYKDKVQKQYGPMFRALKLKAIDQ 135 Query: 54 PVKIRIECHMPDRRR---------RDLDNLQKAAFDALTKAG-FWLDDAQVVDYRVVKMP 103 +IR+ P + R D+DN K D++ G + DD + ++ Sbjct: 136 LCEIRLIVQPPLKTRSYSAKTYPRFDIDNYPKLLIDSVKGDGLLFKDDNIFISEQIKLAE 195 Query: 104 VTKGGRLEL 112 + G + L Sbjct: 196 PCEEGCVWL 204 >UniRef50_C0W5T7 Gp53 family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5T7_9ACTO Length = 130 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 21/135 (15%) Query: 1 MNTYSITLPWP----PSNNRY-YRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPV 55 M+ ++ + P S N +R R R + +AY ++ A V Sbjct: 1 MSPSTLVIDVPGNEWLSANGREHRFGRARRTATLRKRAY------LMARHHGLPRYAGRV 54 Query: 56 KIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQV-----VDYRVVKMPVTKG 107 ++ H R R D N KA D LT AG W DD V YR + Sbjct: 55 RVDFYVHTRTRNRMDPANAYPTVKALVDGLTDAGVWADDDDTHLSGPVPYRGEPVLDLPV 114 Query: 108 G--RLELTITEMGNE 120 G R+ L IT++ E Sbjct: 115 GFRRITLVITDLDEE 129 >UniRef50_B1MZE0 dTDP-glucose pyrophosphorylase n=2 Tax=Leuconostoc RepID=B1MZE0_LEUCK Length = 149 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 19/136 (13%) Query: 1 MNTYSI--TLPWPPSNNRYYRHNRGRTHVSAEGQ----AYRDNVARIIKNAMLDIGLAMP 54 M+ ++ + W + N+Y R ++A+ + AY NV + P Sbjct: 16 MDKVTLYPNILWQFTLNKYIEAERKNRFIAAKLKKTATAYARNVFLQAITDNVSFSW--P 73 Query: 55 VKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGF-----WLDDA--QVVDYRVVKMPV 104 K++ + ++PD RR D DN QK FD + KA +D + + Sbjct: 74 TKLKFDWYLPD-RRIDPDNWTFTQKFIFDGMQKANIGKRVFLDNDNVKNIKGFDHDFYVD 132 Query: 105 TKGGRLELTITEMGNE 120 RLE+ E+ +E Sbjct: 133 KVNPRLEIYEMEVVHE 148 >UniRef50_UPI0001BC49BC hypothetical protein F3_00332 n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC49BC Length = 134 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 18/134 (13%) Query: 1 MNTYSITLPWPPSNNR----YYRHNRGRTHVSA-----------EGQAYR-DNVARIIKN 44 M I P N + +G + + A++ + + + Sbjct: 1 MTQIFIAGNVPSCKNSKRIARIKDKKGNVVATRLINSEVVERYLKTYAFQWNFAGNVAEF 60 Query: 45 AMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDD--AQVVDYRVVKM 102 G P K+ RR+ D N + D + KAG+ DD +++ + Sbjct: 61 HRRIKGKEKPYKVGFYFIRDSRRKFDYINAMQLPCDLMVKAGWIDDDNANEIIPVCLGYE 120 Query: 103 PVTKGGRLELTITE 116 + + + + E Sbjct: 121 VDKRNAGVRIEVLE 134 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%) Query: 27 VSAEGQAYRDNVARIIKNAMLD-IGLAMPVKIRIEC-HMPDRRRRDLDNLQKAAFDALTK 84 ++ + + Y+ + + + I H+ D DLDNL KA D+L Sbjct: 26 LTTQTKYYKTLLKEFFRKDFPRLRPGYGDYSVHIVMEHLGDAPWMDLDNLAKALLDSLCG 85 Query: 85 AGFWLDDAQVVDYRVVKMPVTKGG 108 + DD QV V + + G Sbjct: 86 -NVFEDDHQVARLLVERRAAERDG 108 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGL--AMPVKIRIEC 61 IT P + + + S E ++ + + + + + + Sbjct: 1 MEITFPIEFLVDGTAVSLQAKRRQSIEI--WKSKIVDASREVIPEGHFATEARIAATLFY 58 Query: 62 HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 D+DN+ K DAL + DD QV V K Sbjct: 59 FPATEMAGDIDNIVKPILDAL-GRHIYRDDKQVYRLVVQKFEP 100 >UniRef50_Q854T6 Gp64 n=2 Tax=unclassified Siphoviridae RepID=Q854T6_9CAUD Length = 127 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 8/94 (8%) Query: 2 NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIEC 61 + I LPW +R R H +A+ + R+ V D + + Sbjct: 6 KYFRIDLPW----SRPPLTANQRMHWAAKARKTRE-VRTAAALLARDAPRTDRLVATLHY 60 Query: 62 HMPDRRRRDLDNL---QKAAFDALTKAGFWLDDA 92 +RRRD NL KA D L AG DD Sbjct: 61 QPRQQRRRDNHNLWPTVKALVDGLVDAGVVPDDD 94 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 33/147 (22%) Query: 6 ITLPWPPSNNR-YYRHNRGRTHVSAEG-QAYRDNVARIIKNAMLDIGLAMPVK--IRIEC 61 +T+ P+ R+ G + S+ + +R+ V +A+ + + ++ Sbjct: 8 LTVYGTPAPQGSKNRNRAGALYESSAAVKPWREAVKTAALDALHHDDGWTALSCPVWLDA 67 Query: 62 HMPDRR------------------------RRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 RR DLD L + DAL AG DD+ V Sbjct: 68 QFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVRCTQDALKDAGVLADDSVVASL 127 Query: 98 RVVKMP-----VTKGGRLELTITEMGN 119 K+ + + + + + Sbjct: 128 SASKVYVLWGDALRTPGAVIRVWRLND 154 >UniRef50_B1I2Y2 Putative uncharacterized protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2Y2_DESAP Length = 191 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 44 NAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQ-KAAFDALTKAGFWLDDA-QVVDYRVVK 101 + +D + H D R D+DN K + L AG DD+ Q + V+ Sbjct: 99 SQGVDPRFERALACVTVFHRLD-TRWDIDNRAIKYLVNGLACAGVVSDDSWQNLAVLVIG 157 Query: 102 MPVTKGGRLELTITE 116 K R E+ + Sbjct: 158 KYDKKHPRTEIVVCP 172 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 19/116 (16%) Query: 12 PSNNRYYRHNRGRTHV----SAEGQAYRDNVARIIKNAMLD---IGLAMPVKIRIECHM- 63 P R + SA+ + +RD V+ I A+L L V I M Sbjct: 36 PVGWGRSRKTGKNIPLMKESSAKVKPWRDKVSAAITAAILRGDAKPLHGAVYAEITFTMA 95 Query: 64 -----PDRRR------RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG 108 P RRR D+D L++A +DA+T A W DD +V++ K+ + Sbjct: 96 KPGSRPKRRRTYPAVSPDIDKLERATYDAITTAKAWEDDGRVIENHNRKVYPGEHP 151 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 27/139 (19%) Query: 2 NTYSITLPWPPSNNRYYRHNR----GRTHV---SAEGQAYRDNVARIIKNAMLDIGL--- 51 + +P P+ G+ + S +R+ VA +A+L GL Sbjct: 47 RQLRLFVPGRPAPQGSKDFKGFSKTGKAILKESSDAVGPWRERVALAAASAILAEGLPVL 106 Query: 52 --AMPVKIRIECHMPDR------------RRRDLDNLQKAAFDALTKAGFWLDDAQVVDY 97 + + MP +R DLD L +A D LT W+DD+QVVD Sbjct: 107 AKEFSIAASVTFVMPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDV-VWIDDSQVVDL 165 Query: 98 RVVKMPVT--KGGRLELTI 114 K+ + + I Sbjct: 166 HCRKVLAELTQPPGAHIRI 184 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 25/115 (21%) Query: 25 THVSAEGQAYRDNVARIIKNAMLD---------IGLAMPVKIRIECHMPDRR-------- 67 + E + +AM + +PV +RI+ + P + Sbjct: 1 MYTPDETIRNEAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVS 60 Query: 68 -----RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG--GRLELTIT 115 + D DN+ K D + W DD+QV + VVK P +G +++ + Sbjct: 61 EPNTFKPDADNIAKLVMDGMNGV-VWGDDSQVAEVHVVKWPRRRGIEPHMDIQVY 114 >UniRef50_C3PI76 Putative uncharacterized protein n=3 Tax=Corynebacterium RepID=C3PI76_CORA7 Length = 123 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 10/122 (8%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRD-NVARIIKNAMLDIGLAMPVKIRI 59 M T+P + + + R H + + + + I+ I A + +++ Sbjct: 1 MQQMMFTIPLTFT--KPPLNMNQRLHWAKKAKITKAIRTEAFIRCRAARIPRAKHLTVQL 58 Query: 60 ECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKG--GRLEL 112 D RRRD DNL KA D + AG DD ++ P KG GR+ L Sbjct: 59 HYQPRDNRRRDADNLVPTLKALCDGIVDAGVVPDDTPDYMIKMMPTIHPAVKGEPGRMWL 118 Query: 113 TI 114 T+ Sbjct: 119 TV 120 >UniRef50_C7Q4H8 Endodeoxyribonuclease RusA n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4H8_CATAD Length = 132 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 20 HNRGRTHVSAEGQAYRDNVARIIKNAM-LDIGLAMPVKIRIECHMPDRRRRDLDNL---Q 75 + R H + + K+A I ++I+ H D+RRRD N Sbjct: 25 NANDRVHWRTRARITKALREAAAKSARDAHIPPMEQIRIQAVLHPHDKRRRDPHNWYPSY 84 Query: 76 KAAFDALTKAGFWLDD--AQVVDYRVVKMPVTKGGRLELTITEMGNE 120 KAA D + AG DD ++ VV + ++ L IT G E Sbjct: 85 KAAIDGIVDAGVIPDDDGKHLISIEVVLGAPVRHTQIALRITPFGVE 131 >UniRef50_A1B8H5 Putative uncharacterized protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B8H5_PARDP Length = 122 Score = 59.1 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%) Query: 2 NTYSITLPW----PPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKI 57 + LPW S N H R R + + D +AR I +++ Sbjct: 1 MILRVKLPWAKTSELSANSRL-HWRKRAKLVKAQRRVTDALAREAGWHKARIPADAELRM 59 Query: 58 RIECHMPDR-RRRDLDNLQ---KAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELT 113 + P D DN+ K A DAL A +DD ++ ++ + G + + Sbjct: 60 TLIYCPPSTVTTVDDDNVVTENKGARDALA-AVLRIDDGRIKLQAPIRGDRCRDGAVIVE 118 Query: 114 ITEM 117 + + Sbjct: 119 VEVV 122 >UniRef50_A7A5C0 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5C0_BIFAD Length = 130 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%) Query: 15 NRYYRHNRGRTHVSAEGQAY---RDNVAR----IIKNAMLDIGLAMPVKIRIECHMPDRR 67 Y+ R A+ + + +I + L PV + H Sbjct: 11 KAYWWTQNKRGDWRAKYRRTSVVKRCAYLTYRSLINSGKLKPPAKWPVHVTAIIHPLTHG 70 Query: 68 RRDLDN---LQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE-------LTITE 116 R D +N + KA DA+T+A FW DD Y V E + I E Sbjct: 71 RFDPENAAPMVKAILDAITQADFWPDDN--ARYVVGPDYRLGEPSTEKGVYHITIRIEE 127 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 31/149 (20%) Query: 2 NTYSITLPW----PPSNNRY-YRHNRGRTH-------VSAEGQAYRDNVARIIKNAMLDI 49 +P S N Y R+ G+ S + +R +V + AM + Sbjct: 1 MEIDFFVPGLAAPQGSKNSYTIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAMQER 60 Query: 50 G---LAMPVKIRIECH-------------MPDRRRRDLDNLQKAAFDALTKAGFWLDDAQ 93 G + + + P ++ DLD L +A DAL + +D++ Sbjct: 61 GQQICDDAIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGT-VYTEDSR 119 Query: 94 VVDYRVVKMPVT--KGGRLELTITEMGNE 120 +V+ R K + + + + ++ Sbjct: 120 IVEIRATKRIAEIGETPGVFIHVGVTDDD 148 >UniRef50_B5GC73 Predicted protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GC73_9ACTO Length = 214 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 13/129 (10%) Query: 2 NTYSITLP-WPPSNNRYYRHNRG-RTHVSAEGQAYRDNVARIIKN------AMLDIGLAM 53 Y ITLP P N R + + ++ + + + A L Sbjct: 70 TRYVITLPAGLPLLNSNQRTHHHDKRRLTKRLREAATEAVQECPSLLDALAAARPGPLFE 129 Query: 54 PVKIRIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQ--VVDYRVVKMPVTKGG 108 + RRR D N KA D L AG DD +V + KG Sbjct: 130 RAHVLGILRPATRRRADPANWYPSFKAVIDGLVDAGLLDDDDHTRLVGPDMRLGTPVKGA 189 Query: 109 RLELTITEM 117 +L L I + Sbjct: 190 QLVLIIRGL 198 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 49/165 (29%) Query: 4 YSITLPWPPSNNRYYRHNRGRTHVS--AEGQAYRDNVARIIKNAMLDIGLAMP------- 54 T+ P +R +RG + A + +RD++ ++ L Sbjct: 78 IKFTIRGNPKPLVRHRSSRGFMYNPSSAAQERFRDSLLSMLPRRYHPTILDDQSMDDGKA 137 Query: 55 ------------VKIRIECHMPDRR------------------------RRDLDNLQKAA 78 + + + + + R D+DNL K Sbjct: 138 AVPNVLFSQHEFLAMEVTFRLKRPKNHFVGNKPGTGRMKPTAPGKFHNSRTDIDNLTKFV 197 Query: 79 FDALTKAGFWLDDAQVVDYRVVKMPVTKG---GRLELTITEMGNE 120 D+L ++DD QVV +K+ ++G G ++ IT + +E Sbjct: 198 MDSLNGL-LYVDDKQVVSLSAIKLLDSEGLCEGATDVKITVVKDE 241 >UniRef50_Q38073 Bacteriophage SPP1 complete nucleotide sequence n=1 Tax=Bacillus phage SPP1 RepID=Q38073_BPSPP Length = 62 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 59 IECHMPDRRR-RDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 +E ++PD + RD N +K DAL +D ++D + V + R+E+ I+++ Sbjct: 1 MEFYLPDDGKVRDTHNAKKLLLDALEGV-IHENDMWMIDRTIDFHFVKENPRIEIEISKL 59 >UniRef50_A7H208 Crossover junction endodeoxyribonuclease RusA superfamily n=4 Tax=Campylobacter jejuni RepID=A7H208_CAMJD Length = 129 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (12%) Query: 1 MNTYSITLPWPPSNNR--YYRHNRGRTHVSA---EGQAYRDNVARIIKNAMLDIGLA--- 52 M T L +N Y R + VS + ++ + Sbjct: 3 MATREYALYIELKDNPIPYKRTTQRAKFVSKDYLKYLEFKKLLQMEFLRQNKVQCFKAFD 62 Query: 53 --MPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRL 110 I +E +++ D DN+ K DAL + +D V+ K L Sbjct: 63 EKKFYSIELEIGFKNKKHGDCDNILKGVLDAL-----FKNDKNVIKGEYELKSFEKSF-L 116 Query: 111 ELTITEMG 118 ++ I+E Sbjct: 117 KVKISEFK 124 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG---GRLELTITEMGNE 120 R D+DNL K D+ + DD QV+ V K+ +G G ++ + + ++ Sbjct: 316 SPTRTDVDNLAKFVLDSCNGL-LYEDDRQVISLHVTKVLDEQGTCLGSTQVDLRAVRDD 373 >UniRef50_Q8PFN4 Putative uncharacterized protein n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PFN4_XANAC Length = 305 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 9/79 (11%) Query: 32 QAYRDNVARIIKNAMLDIGL--AMPVKIRIECHMPDRRR------RDLDNLQKAAFDALT 83 ++ RD + I+ ++ D A V + + ++ +R D+DN+ K DALT Sbjct: 43 KSARDELCSNIRRSLQDFNWICAGQVNLELLWYLHATQRQETDKIGDIDNITKPIIDALT 102 Query: 84 KA-GFWLDDAQVVDYRVVK 101 G +DD+Q+ Sbjct: 103 GEKGLLIDDSQIGSMHSFW 121 >UniRef50_A7H0V1 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0V1_CAMC5 Length = 143 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 27/135 (20%) Query: 3 TYSIT-LPWPPSNNRYYRHNRGRTHVS--AEGQAYRDNVARIIKNAMLDIG--------- 50 + IT L + P Y R + + ++ +A A + Sbjct: 6 EFEITGLEYNPVP--YKRTTQKMKFTKDYKKYLEWKTLLADAFCAANPNAPKRIIRRGKD 63 Query: 51 ------LAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPV 104 L + D+ D DN+ K DAL + +D Sbjct: 64 WHAVPELCGAYFVETIAIYKDKTHGDTDNVAKGVLDAL-----FKNDKY-ASGSYSYEYA 117 Query: 105 TKGGRLELTITEMGN 119 KGG +++ I E+G Sbjct: 118 GKGG-IKVKIYEVGE 131 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 50.6 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 8/83 (9%) Query: 37 NVARIIKNAMLDIGLAMPVKIRIEC--HMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQV 94 L +PV + + H P DLDN K+ D+L WLDD QV Sbjct: 16 FFCVTAAEEEEVEPLCLPVSLVLSFATHPP----GDLDNYIKSLADSLNGIA-WLDDRQV 70 Query: 95 VDY-RVVKMPVTKGGRLELTITE 116 + V R E+ + Sbjct: 71 ARMEVEKVVVVEGDERAEVEVAP 93 >UniRef50_Q7P5T9 Putative uncharacterized protein FNV0869 n=2 Tax=Fusobacteriaceae RepID=Q7P5T9_FUSNV Length = 129 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 22/66 (33%) Query: 52 AMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 P K+ + +R+ D N + FD + + DD V K R Sbjct: 64 EKPYKVELYFIRGSKRKFDYINAAQIVFDLMQHYDYIEDDDSQNIIPVFKGFEVDKFRAG 123 Query: 112 LTITEM 117 + I + Sbjct: 124 VEIRVL 129 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 65 DRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 + D+DN+ K DAL +LD+ Q++ V K G E +E+ Sbjct: 56 TNNKPDIDNIMKITADALNGLA-YLDNKQIISCTVGKYYSNVQGASENRESEL 107 >UniRef50_C6NYJ0 Endodeoxyribonuclease RusA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYJ0_9GAMM Length = 80 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 52 AMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 +I + + R DL N +KAA DAL F DD Q+V + + G + Sbjct: 11 EKRRQIWGDYWHLELRCIDLANAEKAAVDALQGVAF-EDDKQIVRMVLERGQPVPEGAVF 69 Query: 112 LTITEM 117 + T Sbjct: 70 VEWTPF 75 >UniRef50_C3PIE5 Putative uncharacterized protein n=1 Tax=Corynebacterium aurimucosum ATCC 700975 RepID=C3PIE5_CORA7 Length = 158 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 5 SITLPW---PPSNNRYYRHNRGRTH-VSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 +I LPW P S N +RG +A+ + + V + +N + G+ + +++ Sbjct: 18 TIELPWEKPPLSLNDSAPASRGAVWGRAAKKREIQQAVHLLARNVRMPEGM-HYLIVQLH 76 Query: 61 CHMPDRRRRDLDNLQ---KAAFDALT-------KAGFWLDD 91 D R RD DN+ K +DAL+ G DD Sbjct: 77 YRPRDNRGRDTDNVAASGKPIYDALSRGSKQIPGLGLVPDD 117 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 64 PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE 120 P + D+ N+ K D L + DD ++D + K K + E+ + Sbjct: 8 PHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA-KTYGIFFKAEEIRRD 63 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 27 VSAEGQAYRDNVARIIKNAML-DIGLAMPVKIRIE--CHMPDRRRRDLDNLQKAAFDALT 83 V+ + +A + V+ ++ + P + RI R D+DN+ KA D+L+ Sbjct: 24 VTTQTRALKKIVSAHMRRQVAFVRPAFGPFEARIWTSVLAETRGHHDVDNIAKAVLDSLS 83 Query: 84 KAGFWLDDA 92 W DD Sbjct: 84 GH-IWRDDR 91 >UniRef50_C7F4G5 Predicted protein n=1 Tax=Cyanophage PSS2 RepID=C7F4G5_9CAUD Length = 124 Score = 45.6 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 12/120 (10%) Query: 3 TYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAM-----LDIGLAMPVKI 57 + L P + R RGR ++ A ++ +++ P+K+ Sbjct: 1 MIEVRLDMPLMSKARPRVARGRAYMPAPYVNWKKTAQVQLESLWTENDLPTYDKETPIKL 60 Query: 58 RIECHMPDRRRRDLDNLQKAAFDALTKA-----GFWLDDAQVVDYRVVKMPVTKGGRLEL 112 ++ H P R D DNL A DA G W+DD V V V + + Sbjct: 61 SVQAHGPGRC--DSDNLLGALLDAGLPVKQGWRGCWVDDRVTVIPWVCFEWVKNSEQFWV 118 >UniRef50_C9RCI0 Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RCI0_AMMDK Length = 172 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 34 YRDNVARIIKNAMLDIGLAMPV---KIRIECHMPDRRRRDLDNLQ-KAAFDALTKAGFWL 89 ++ VA +++ + + +P+ + I +P + D+DN+ + + L AG Sbjct: 67 WKHAVAHAVESLKVTGRVPLPIVPASVLIVACVP-EGKWDVDNVAYRLIVNGLVAAGVLP 125 Query: 90 DDA--QVVDYRVVKMPVTKGGRLELTIT 115 DD+ + V + E+ +T Sbjct: 126 DDSTQYLDSVTVRRGRPEPRPHTEVYVT 153 >UniRef50_B1I7E1 RUS n=5 Tax=root RepID=B1I7E1_STRPI Length = 52 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%) Query: 75 QKAAFDALTKAGFWLDDAQVVDYRVVKMPV-----TKGGRLELTITEM 117 KA D +T AG W DD V ++ + RLE I E+ Sbjct: 5 VKAIIDGMTDAGIWTDDNHKVIKKLSFVYGGLSEEKGHYRLEFDIEEV 52 >UniRef50_Q8ZS47 All7665 protein n=2 Tax=Nostocaceae RepID=Q8ZS47_ANASP Length = 148 Score = 43.3 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 8/106 (7%) Query: 8 LPWPPSNNRYYRHNRGRTHVSAEGQA-YRDNVARIIKNAMLDIGLAMPVKIRIECHMPDR 66 +P PP N R SAE + + + + +++ + L V I ++ + Sbjct: 1 MPLPPCMNEIINQARSSWQASAELKKYWTNLIGEFVRD--CEFCLDSTVWIEFHWYLKN- 57 Query: 67 RRRDLDNLQ---KAAFDALTKAGFWLDDAQ-VVDYRVVKMPVTKGG 108 RD DN+ K D L +D V+ VV G Sbjct: 58 FARDSDNVAAAAKFIMDGLVTGRAIRNDNLTVIQSPVVHYYHRSSG 103 >UniRef50_C5RA86 Possible dTDP-glucose pyrophosphorylase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RA86_WEIPA Length = 145 Score = 42.9 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 14/108 (12%) Query: 21 NRGRTHVSAEGQAYRDNVARIIKNAMLD--IGLAMPVKIRIECHMPDRRRRDLDNLQ--- 75 GR + + + ++ AM+D + K + + ++PDRR DLDN Sbjct: 38 RAGRMIANKRKHQIQAKIMPLVDQAMVDGLAPIGAKTKFKFDWYLPDRRT-DLDNWTFTH 96 Query: 76 KAAFDALT-----KAGFWLDDAQ---VVDYRVVKMPVTKGGRLELTIT 115 K FDA F +D V Y + R+E+ Sbjct: 97 KFIFDAFQASSVRGQVFMPNDNLNFVVATYDDFRGIDKDNPRVEINWE 144 >UniRef50_Q8R8F6 Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8F6_THETN Length = 182 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 5/106 (4%) Query: 10 WPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRR 69 + Y R ++ + E + + +NV +KN I + + ++ + P Sbjct: 64 VKLTVMDYP--ARLQSTKNEEKERWINNVMFALKNVKDKISFD-RIFVFVKFYFPVS-NV 119 Query: 70 DLDNL-QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTI 114 D+DN K D + + DD + R E+ I Sbjct: 120 DVDNRDIKPIIDGIKYSRIVADDNYRYVSYGFNANFSDSPRTEIYI 165 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 43/131 (32%), Gaps = 30/131 (22%) Query: 1 MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIE 60 M TY IT P + YR + + + + + Sbjct: 1 MRTYDIT----PLGKPR-MTRADKWKTRPAVMRYRAFC-DEARLRRIHLPESGA-HVTFV 53 Query: 61 CHMPD---------------RRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVT 105 MP + + D DN+ KA DAL + DD+ V D R+ K+ Sbjct: 54 MPMPTSWSKKKREQFDGKPHQSKPDCDNMLKALMDAL-----FDDDSSVWDCRITKLWGE 108 Query: 106 KGGRLELTITE 116 KG ++ I E Sbjct: 109 KG---QIIIRE 116 >UniRef50_B2A5E1 Putative uncharacterized protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5E1_NATTJ Length = 181 Score = 41.4 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 7/97 (7%) Query: 23 GRTHVSAEGQAYRDNVARIIKNAMLDIGLA--MPVKIRIECHMPDRRRRDLDNLQ-KAAF 79 + + + RD IIK A+ L P + I ++ D+ N K Sbjct: 71 NGNFTNRQHKEVRDYWYSIIKRALAGQNLDPIKPAIVYIRYYLDKNC--DVGNFLSKFIQ 128 Query: 80 DALTKAGFWLDD--AQVVDYRVVKMPVTKGGRLELTI 114 D L G DD V K+ K R E+ + Sbjct: 129 DGLVYNGVLEDDDLNNVTLLSEAKLKKEKAPRTEIYV 165 >UniRef50_C3U2J8 Putative uncharacterized protein n=1 Tax=Lactococcus phage P087 RepID=C3U2J8_9CAUD Length = 137 Score = 39.8 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%) Query: 58 RIECHMPDRRRRDLDNL---QKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGR----- 109 I RRRDLDN+ K D+ F +D + + Sbjct: 57 WIFIWHTCDRRRDLDNIGSAVKFILDSFQSLKFIKNDGYRNNRLLTHYYADDVPEKDYEY 116 Query: 110 LEL----TITEMGNE 120 +E+ +TE + Sbjct: 117 VEIIHCTELTEYIEQ 131 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 39.8 bits (92), Expect = 0.028, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%) Query: 64 PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM 117 P + + D DNL KA DA+ + DDA + D RV K+ +G ++ I E+ Sbjct: 100 PHQGKPDFDNLMKALMDAI-----FEDDAHIWDARVTKLWGEEG---KIIIGEI 145 >UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZS6_9ZZZZ Length = 119 Score = 39.8 bits (92), Expect = 0.029, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 64 PDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTIT 115 P + + DLDN+ K DAL DDA V K ++ + L++ Sbjct: 62 PCQSKPDLDNVLKGFMDALR-----TDDASVYAVSASKFW-SEQPGVVLSVR 107 >UniRef50_C7XQD1 Predicted protein n=2 Tax=Fusobacterium sp. 3_1_36A2 RepID=C7XQD1_9FUSO Length = 118 Score = 38.3 bits (88), Expect = 0.071, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 19/128 (14%) Query: 1 MNTYSITLPWPP-----SNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNA-MLDIGLAMP 54 M + +P S N+ Y H S + ++ + +++++ + P Sbjct: 1 MKSI-FKIPLEIDSKKWSLNKIY----AGVHWSVRVKD-KEYIRQLVRSVTGIRKPYEKP 54 Query: 55 VKIRIECHMPDRRRRDLDN---LQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLE 111 V I++ D+ N L K D L K G +D + + Sbjct: 55 VLIKMAF----NSALDVSNHGYLFKLIEDGLVKCGVIQNDGYKYVKCNIMTLQKAFKGVI 110 Query: 112 LTITEMGN 119 + + E+ Sbjct: 111 VEVEEISE 118 >UniRef50_B9MP30 Putative uncharacterized protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MP30_ANATD Length = 204 Score = 38.3 bits (88), Expect = 0.077, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 31 GQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR--RRDLDN-LQKAAFDALTKAGF 87 +++ + + + + I E ++P + D DN + K DAL +G Sbjct: 92 TLKWKEMIYNALSK-LPEKPYFEKAHIVFEFYVPHSVSIKADTDNRMMKTLIDALVISGI 150 Query: 88 WLDD 91 +D Sbjct: 151 IPED 154 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.154 0.452 Lambda K H 0.267 0.0479 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 852,140,086 Number of Sequences: 3077464 Number of extensions: 32426836 Number of successful extensions: 103817 Number of sequences better than 1.0e-01: 195 Number of HSP's better than 0.1 without gapping: 353 Number of HSP's successfully gapped in prelim test: 227 Number of HSP's that attempted gapping in prelim test: 102611 Number of HSP's gapped (non-prelim): 592 length of query: 120 length of database: 1,040,396,356 effective HSP length: 87 effective length of query: 33 effective length of database: 772,656,988 effective search space: 25497680604 effective search space used: 25497680604 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (37.9 bits)