BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (125 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P64440 Inner membrane protein ybjM n=102 Tax=Enterobact... 249 3e-65 UniRef50_B7LN14 Putative uncharacterized protein ybjM n=1 Tax=Es... 199 2e-50 UniRef50_C6DEP3 Putative uncharacterized protein n=8 Tax=Enterob... 104 7e-22 UniRef50_C9Y011 Inner membrane protein ybjM n=1 Tax=Cronobacter ... 100 1e-20 UniRef50_D1RNZ3 Putative uncharacterized protein n=1 Tax=Serrati... 99 6e-20 UniRef50_A8GCA4 Putative uncharacterized protein n=1 Tax=Serrati... 93 2e-18 UniRef50_A7MF40 Putative uncharacterized protein n=1 Tax=Cronoba... 91 1e-17 UniRef50_C5BED8 Putative uncharacterized protein n=2 Tax=Edwards... 53 3e-06 >UniRef50_P64440 Inner membrane protein ybjM n=102 Tax=Enterobacteriaceae RepID=YBJM_ECO57 Length = 125 Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE Sbjct: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ Sbjct: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 Query: 121 HRKNQ 125 HRKNQ Sbjct: 121 HRKNQ 125 >UniRef50_B7LN14 Putative uncharacterized protein ybjM n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LN14_ESCF3 Length = 129 Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 98/125 (78%), Positives = 109/125 (87%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 MK K+ WAGAICCFVLFIVVCLFLAT MKGAFRAAGHPE+GLLFFILPGAVASF S RR Sbjct: 1 MKRKRSWAGAICCFVLFIVVCLFLATQMKGAFRAAGHPELGLLFFILPGAVASFCSNRRA 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 V+ PL GAM+AAPC ML++RLFF+ RS WQELAWLLSAVFWCALGALCFLFISSLF + Sbjct: 61 VINPLLGAMMAAPCCMLLLRLFFTTHRSLWQELAWLLSAVFWCALGALCFLFISSLFDLR 120 Query: 121 HRKNQ 125 ++ + Sbjct: 121 QKRER 125 >UniRef50_C6DEP3 Putative uncharacterized protein n=8 Tax=Enterobacteriaceae RepID=C6DEP3_PECCP Length = 123 Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 9/127 (7%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAA-----GHPEIGLLFFILPGAVASFF 55 M + W GA CCF+LF VV FL+ ++ + G P G+L F+LPG VA F Sbjct: 1 MAKNKGWVGATCCFLLFTVV--FLSQKIEASDVVVNDGLRGSP--GMLLFLLPGMVACFL 56 Query: 56 SQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISS 115 S R +L PLFGA+ A P +L++ L+ +P RSFWQELA+++SAVFWC LGAL L + S Sbjct: 57 SARGRLLYPLFGALAAMPVCLLVLHLWNTPMRSFWQELAYVMSAVFWCVLGALGVLCLRS 116 Query: 116 LFKPQHR 122 L++ R Sbjct: 117 LYRRYLR 123 >UniRef50_C9Y011 Inner membrane protein ybjM n=1 Tax=Cronobacter turicensis RepID=C9Y011_CROTZ Length = 125 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 5/118 (4%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAF--RAAGHPEIGLLFFILPGAVASFFSQR 58 M+ R A +CCF+LF+ V FLA M G ++G+L+F+LPGAVA ++R Sbjct: 1 MRRHSRTA-TVCCFILFLAV--FLAQKMVPGTLPPVCGSMDLGILYFMLPGAVAGLCARR 57 Query: 59 REVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSL 116 LKPL GA+LAAP ++I+ L+ RS WQELAW+ SA+FWC++G+LC+LF+ +L Sbjct: 58 GRELKPLLGALLAAPICLVILHLWSGEGRSIWQELAWIFSALFWCSIGSLCWLFVLTL 115 >UniRef50_D1RNZ3 Putative uncharacterized protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RNZ3_SEROD Length = 129 Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 M + + W G + C +LF +V L + G+ H E GLL F++PG +AS+ S ++ Sbjct: 1 MANYRYWVGILSCSLLFSLVFLGQQSGAFGSTDHEHHGETGLLLFVIPGMIASYLSSKKR 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSL---F 117 +L PL GA+ A P + I + +P SFWQELA+ SAVFWC GA+ LF SL F Sbjct: 61 ILCPLLGALYALPLCLTIRHFWLTPFYSFWQELAYATSAVFWCVFGAMLALFARSLLQAF 120 Query: 118 KPQHRKNQ 125 +P HR+ + Sbjct: 121 QPGHRRER 128 >UniRef50_A8GCA4 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GCA4_SERP5 Length = 126 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 6/121 (4%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHP---EIGLLFFILPGAVASFFSQ 57 M ++ W G + CF+LF +V L GAF + H E GLL F++PG VAS+ S Sbjct: 1 MASERYWWGILSCFLLFSLVYL---GQQSGAFGSTDHEHRGETGLLLFVIPGVVASYLSS 57 Query: 58 RREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLF 117 ++ +L PL GA+ A P ++I + +P+ S WQELA+ SAVFWC GAL LF L Sbjct: 58 KKRILCPLLGALYALPLCLIIRHFWLTPSASVWQELAYATSAVFWCMFGALLALFARGLL 117 Query: 118 K 118 + Sbjct: 118 Q 118 >UniRef50_A7MF40 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MF40_ENTS8 Length = 105 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 67/92 (72%), Gaps = 3/92 (3%) Query: 34 AAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQEL 93 AG ++G+L F+LPGAVA ++R LKPL GA++AAP ++++ L+ RSFWQEL Sbjct: 13 GAGTMDLGILSFMLPGAVAGVCARRGRELKPLAGALIAAPLCLVLLHLWGGEARSFWQEL 72 Query: 94 AWLLSAVFWCALGALCFLFISSLFKPQHRKNQ 125 AW+ SA+FWC++G+LC+LF+ +L +HR + Sbjct: 73 AWIFSALFWCSIGSLCWLFLITL---RHRGDS 101 >UniRef50_C5BED8 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BED8_EDWI9 Length = 125 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATH----MKGAFRAAGHPEIGLLFFILPGAVASFFS 56 M + +RW I CF++ V LFL +H G GLL ++LPG + + Sbjct: 1 MANGRRWFTLILCFLM--VTTLFLLSHCYVQAHGGIAEPPGMRPGLLLYMLPGFILCPLA 58 Query: 57 QRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSL 116 +R+ VL GA+++A L+ L+ + + Q L + S VFWC GAL + F ++L Sbjct: 59 RRQRVLTVFCGALVSAVFCQLLHMLWLADDETPLQLLPYTTSMVFWCVFGALLYWFAATL 118 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P64440 Inner membrane protein ybjM n=102 Tax=Enterobact... 150 1e-35 UniRef50_B7LN14 Putative uncharacterized protein ybjM n=1 Tax=Es... 148 4e-35 UniRef50_D1RNZ3 Putative uncharacterized protein n=1 Tax=Serrati... 145 3e-34 UniRef50_A8GCA4 Putative uncharacterized protein n=1 Tax=Serrati... 136 2e-31 UniRef50_C6DEP3 Putative uncharacterized protein n=8 Tax=Enterob... 124 9e-28 UniRef50_C9Y011 Inner membrane protein ybjM n=1 Tax=Cronobacter ... 116 3e-25 UniRef50_C5BED8 Putative uncharacterized protein n=2 Tax=Edwards... 115 5e-25 UniRef50_A7MF40 Putative uncharacterized protein n=1 Tax=Cronoba... 110 2e-23 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P64440 Inner membrane protein ybjM n=102 Tax=Enterobacteriaceae RepID=YBJM_ECO57 Length = 125 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE Sbjct: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ Sbjct: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 Query: 121 HRKNQ 125 HRKNQ Sbjct: 121 HRKNQ 125 >UniRef50_B7LN14 Putative uncharacterized protein ybjM n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LN14_ESCF3 Length = 129 Score = 148 bits (374), Expect = 4e-35, Method: Composition-based stats. Identities = 98/125 (78%), Positives = 109/125 (87%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 MK K+ WAGAICCFVLFIVVCLFLAT MKGAFRAAGHPE+GLLFFILPGAVASF S RR Sbjct: 1 MKRKRSWAGAICCFVLFIVVCLFLATQMKGAFRAAGHPELGLLFFILPGAVASFCSNRRA 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 V+ PL GAM+AAPC ML++RLFF+ RS WQELAWLLSAVFWCALGALCFLFISSLF + Sbjct: 61 VINPLLGAMMAAPCCMLLLRLFFTTHRSLWQELAWLLSAVFWCALGALCFLFISSLFDLR 120 Query: 121 HRKNQ 125 ++ + Sbjct: 121 QKRER 125 >UniRef50_D1RNZ3 Putative uncharacterized protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RNZ3_SEROD Length = 129 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 M + + W G + C +LF +V L + G+ H E GLL F++PG +AS+ S ++ Sbjct: 1 MANYRYWVGILSCSLLFSLVFLGQQSGAFGSTDHEHHGETGLLLFVIPGMIASYLSSKKR 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSL---F 117 +L PL GA+ A P + I + +P SFWQELA+ SAVFWC GA+ LF SL F Sbjct: 61 ILCPLLGALYALPLCLTIRHFWLTPFYSFWQELAYATSAVFWCVFGAMLALFARSLLQAF 120 Query: 118 KPQHRKNQ 125 +P HR+ + Sbjct: 121 QPGHRRER 128 >UniRef50_A8GCA4 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GCA4_SERP5 Length = 126 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 72/125 (57%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRRE 60 M ++ W G + CF+LF +V L + G+ E GLL F++PG VAS+ S ++ Sbjct: 1 MASERYWWGILSCFLLFSLVYLGQQSGAFGSTDHEHRGETGLLLFVIPGVVASYLSSKKR 60 Query: 61 VLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQ 120 +L PL GA+ A P ++I + +P+ S WQELA+ SAVFWC GAL LF L + Sbjct: 61 ILCPLLGALYALPLCLIIRHFWLTPSASVWQELAYATSAVFWCMFGALLALFARGLLQAY 120 Query: 121 HRKNQ 125 + ++ Sbjct: 121 RQCHR 125 >UniRef50_C6DEP3 Putative uncharacterized protein n=8 Tax=Enterobacteriaceae RepID=C6DEP3_PECCP Length = 123 Score = 124 bits (311), Expect = 9e-28, Method: Composition-based stats. Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 5/125 (4%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAG---HPEIGLLFFILPGAVASFFSQ 57 M + W GA CCF+LF VV FL+ ++ + G+L F+LPG VA F S Sbjct: 1 MAKNKGWVGATCCFLLFTVV--FLSQKIEASDVVVNDGLRGSPGMLLFLLPGMVACFLSA 58 Query: 58 RREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLF 117 R +L PLFGA+ A P +L++ L+ +P RSFWQELA+++SAVFWC LGAL L + SL+ Sbjct: 59 RGRLLYPLFGALAAMPVCLLVLHLWNTPMRSFWQELAYVMSAVFWCVLGALGVLCLRSLY 118 Query: 118 KPQHR 122 + R Sbjct: 119 RRYLR 123 >UniRef50_C9Y011 Inner membrane protein ybjM n=1 Tax=Cronobacter turicensis RepID=C9Y011_CROTZ Length = 125 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 5/118 (4%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATHMKGAF--RAAGHPEIGLLFFILPGAVASFFSQR 58 M+ R A +CCF+LF+ V FLA M G ++G+L+F+LPGAVA ++R Sbjct: 1 MRRHSRTAT-VCCFILFLAV--FLAQKMVPGTLPPVCGSMDLGILYFMLPGAVAGLCARR 57 Query: 59 REVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSL 116 LKPL GA+LAAP ++I+ L+ RS WQELAW+ SA+FWC++G+LC+LF+ +L Sbjct: 58 GRELKPLLGALLAAPICLVILHLWSGEGRSIWQELAWIFSALFWCSIGSLCWLFVLTL 115 >UniRef50_C5BED8 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BED8_EDWI9 Length = 125 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 1 MKHKQRWAGAICCFVLFIVVCLFLATH----MKGAFRAAGHPEIGLLFFILPGAVASFFS 56 M + +RW I CF++ V LFL +H G GLL ++LPG + + Sbjct: 1 MANGRRWFTLILCFLM--VTTLFLLSHCYVQAHGGIAEPPGMRPGLLLYMLPGFILCPLA 58 Query: 57 QRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSL 116 +R+ VL GA+++A L+ L+ + + Q L + S VFWC GAL + F ++L Sbjct: 59 RRQRVLTVFCGALVSAVFCQLLHMLWLADDETPLQLLPYTTSMVFWCVFGALLYWFAATL 118 >UniRef50_A7MF40 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MF40_ENTS8 Length = 105 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 44/104 (42%), Positives = 68/104 (65%), Gaps = 2/104 (1%) Query: 24 LATHMKGAF--RAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRL 81 +A M AG ++G+L F+LPGAVA ++R LKPL GA++AAP ++++ L Sbjct: 1 MAQKMVPGTFAPGAGTMDLGILSFMLPGAVAGVCARRGRELKPLAGALIAAPLCLVLLHL 60 Query: 82 FFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ 125 + RSFWQELAW+ SA+FWC++G+LC+LF+ +L + + Sbjct: 61 WGGEARSFWQELAWIFSALFWCSIGSLCWLFLITLRHRGDSRRR 104 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.323 0.138 0.432 Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 516,285,105 Number of Sequences: 3077464 Number of extensions: 19799217 Number of successful extensions: 103272 Number of sequences better than 1.0e-01: 14 Number of HSP's better than 0.1 without gapping: 17 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 103242 Number of HSP's gapped (non-prelim): 26 length of query: 125 length of database: 1,040,396,356 effective HSP length: 91 effective length of query: 34 effective length of database: 760,347,132 effective search space: 25851802488 effective search space used: 25851802488 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.0 bits) S2: 87 (38.1 bits)