BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (326 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 665 0.0 UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enteri... 508 e-143 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 365 1e-99 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 340 4e-92 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 336 8e-91 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 325 2e-87 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 324 2e-87 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 324 3e-87 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 320 5e-86 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 318 1e-85 UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D... 313 4e-84 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 309 1e-82 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 297 3e-79 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 296 6e-79 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 290 6e-77 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 289 1e-76 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 281 2e-74 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 273 6e-72 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 269 9e-71 UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 263 8e-69 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 262 1e-68 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 257 4e-67 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 255 1e-66 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 250 4e-65 UniRef50_Q8D220 Pseudouridine synthase n=1 Tax=Wigglesworthia gl... 247 4e-64 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 240 6e-62 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 239 1e-61 UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6... 238 1e-61 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 236 8e-61 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 233 1e-59 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 230 6e-59 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 227 5e-58 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 226 1e-57 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 224 4e-57 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 223 6e-57 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 223 8e-57 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 223 8e-57 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 222 1e-56 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 222 2e-56 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 222 2e-56 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 221 2e-56 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 221 3e-56 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 220 4e-56 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 220 5e-56 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 220 7e-56 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 219 7e-56 UniRef50_A6GN92 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 218 2e-55 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 216 7e-55 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 216 1e-54 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 214 3e-54 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 213 7e-54 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 211 2e-53 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 211 2e-53 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 211 3e-53 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 211 3e-53 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 211 4e-53 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 210 5e-53 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 210 5e-53 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 210 5e-53 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 210 6e-53 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 209 9e-53 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 209 1e-52 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 209 1e-52 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 207 3e-52 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 207 5e-52 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 207 6e-52 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 206 1e-51 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 205 2e-51 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 205 2e-51 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 205 2e-51 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 205 2e-51 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 204 2e-51 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 204 3e-51 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 204 3e-51 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 203 7e-51 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 203 8e-51 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 202 1e-50 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 201 3e-50 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 201 3e-50 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 201 4e-50 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 200 4e-50 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 200 5e-50 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 200 6e-50 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 200 6e-50 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 200 7e-50 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 199 8e-50 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 198 2e-49 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 198 3e-49 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 197 3e-49 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 197 3e-49 UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae ... 197 5e-49 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 197 6e-49 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 196 9e-49 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 196 1e-48 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 196 1e-48 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 195 2e-48 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 194 4e-48 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 193 8e-48 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 192 9e-48 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 192 1e-47 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 192 2e-47 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 191 2e-47 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 191 3e-47 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 191 3e-47 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 191 4e-47 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 190 6e-47 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 190 6e-47 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 190 6e-47 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 189 8e-47 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 189 1e-46 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 189 1e-46 UniRef50_Q1AVY4 Pseudouridine synthase n=2 Tax=Rubrobacteridae R... 189 2e-46 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 188 3e-46 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 187 5e-46 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 186 9e-46 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 186 1e-45 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 186 1e-45 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 186 1e-45 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 186 1e-45 UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Ta... 184 3e-45 UniRef50_Q4A7R4 Pseudouridine synthase n=5 Tax=Mycoplasma hyopne... 184 3e-45 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 184 3e-45 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 184 3e-45 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 184 3e-45 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 184 4e-45 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 183 7e-45 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 183 8e-45 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 182 1e-44 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 182 1e-44 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 182 2e-44 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 181 2e-44 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 181 3e-44 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 181 4e-44 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 181 4e-44 UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 181 4e-44 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 179 1e-43 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 178 2e-43 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 178 3e-43 UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4... 178 3e-43 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 177 3e-43 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 177 3e-43 UniRef50_Q6KHW4 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 177 5e-43 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 176 8e-43 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 176 1e-42 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 175 2e-42 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 175 2e-42 UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D... 174 3e-42 UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Ta... 174 5e-42 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 174 6e-42 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 173 6e-42 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 173 6e-42 UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 T... 173 7e-42 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 173 9e-42 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 172 2e-41 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 172 2e-41 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 171 2e-41 UniRef50_B6WA53 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 171 4e-41 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 169 9e-41 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 169 1e-40 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 169 1e-40 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 169 2e-40 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 168 3e-40 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 168 3e-40 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 167 3e-40 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 167 4e-40 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 167 5e-40 UniRef50_C9KQC1 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 167 6e-40 UniRef50_Q2GEQ1 Ribosomal large subunit pseudouridine synthases,... 166 8e-40 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 166 8e-40 UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter... 166 1e-39 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 166 1e-39 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 166 1e-39 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 165 2e-39 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 165 3e-39 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 164 3e-39 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 164 3e-39 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 164 4e-39 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 164 4e-39 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 162 1e-38 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 161 3e-38 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 160 4e-38 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 159 9e-38 UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium t... 159 1e-37 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 159 1e-37 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 159 1e-37 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 159 1e-37 UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D... 159 1e-37 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 159 2e-37 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 158 2e-37 UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veil... 158 3e-37 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 157 4e-37 UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 157 5e-37 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 157 6e-37 UniRef50_C7RGL6 Pseudouridine synthase, RluA family n=3 Tax=Anae... 157 6e-37 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 156 9e-37 UniRef50_C4ZAQ6 Pseudouridine synthase n=15 Tax=Clostridiales Re... 156 1e-36 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 156 1e-36 UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bif... 154 4e-36 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 154 4e-36 UniRef50_A6GHA7 Pseudouridine synthase n=1 Tax=Plesiocystis paci... 154 5e-36 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 152 1e-35 UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Meth... 152 1e-35 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 152 1e-35 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 152 2e-35 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 151 3e-35 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 150 5e-35 UniRef50_B9YDX4 Pseudouridine synthase n=1 Tax=Holdemania filifo... 150 6e-35 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 150 6e-35 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 150 7e-35 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 149 1e-34 UniRef50_P0A5T2 Uncharacterized RNA pseudouridine synthase Rv154... 149 1e-34 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 149 2e-34 UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostri... 148 3e-34 UniRef50_B0SGK3 Pseudouridylate synthase, 23S RNA-specific n=2 T... 148 3e-34 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 148 3e-34 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 147 4e-34 UniRef50_Q1D9A6 Pseudouridine synthase n=2 Tax=Cystobacterineae ... 147 5e-34 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 145 1e-33 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 145 1e-33 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 145 2e-33 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 144 3e-33 UniRef50_UPI000178A5E6 pseudouridine synthase, RluA family n=1 T... 144 4e-33 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 144 5e-33 UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 144 6e-33 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 143 7e-33 UniRef50_C4GBK1 Putative uncharacterized protein n=1 Tax=Shuttle... 143 7e-33 UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterale... 143 8e-33 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 143 9e-33 UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 142 1e-32 UniRef50_D1BPK7 Pseudouridine synthase n=3 Tax=Veillonella RepID... 142 2e-32 UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cyst... 142 2e-32 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 141 2e-32 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 141 4e-32 UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter Re... 140 4e-32 UniRef50_Q8EWS1 Pseudouridine synthase n=1 Tax=Mycoplasma penetr... 139 1e-31 UniRef50_A7VVQ2 Pseudouridine synthase n=1 Tax=Clostridium leptu... 139 1e-31 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 139 2e-31 UniRef50_C6J215 Pseudouridine synthase n=1 Tax=Paenibacillus sp.... 138 2e-31 UniRef50_C3RIE2 Pseudouridine synthase n=4 Tax=Bacteria RepID=C3... 138 2e-31 UniRef50_Q03EW7 Pseudouridine synthase n=1 Tax=Pediococcus pento... 137 5e-31 UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D... 137 5e-31 UniRef50_B1C3D3 Pseudouridine synthase n=1 Tax=Clostridium spiro... 137 6e-31 UniRef50_UPI00016B2413 ribosomal large subunit pseudouridine syn... 137 6e-31 UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D... 137 8e-31 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 136 8e-31 UniRef50_B0PDX0 Putative uncharacterized protein n=1 Tax=Anaerot... 136 8e-31 UniRef50_C7GZU4 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 136 9e-31 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 136 1e-30 UniRef50_Q3A3D8 Pseudouridine synthase n=2 Tax=Desulfuromonadale... 136 1e-30 UniRef50_C7LZI3 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 136 1e-30 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/326 (99%), Positives = 326/326 (100%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL Sbjct: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDII+INKPRDLVVHPGAGNPDGTVLNALL Sbjct: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALL 120 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM Sbjct: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP Sbjct: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 Query: 301 IPQDMVELIEVMRADFEEHKDEVDWL 326 IPQDMVELIEVMRADFEEHKDEVDWL Sbjct: 301 IPQDMVELIEVMRADFEEHKDEVDWL 326 >UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGU8_SALAR Length = 318 Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/262 (93%), Positives = 257/262 (98%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL+QRVLVNG++CDKPKEKVL Sbjct: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVL 60 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGE+VAI+AEI+EE RFE QDIPLDIVYED+DI++INKPRDLVVHPGAGNPDGTVLNALL Sbjct: 61 GGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALL 120 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ REITREYEAVAIGHMT Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMT 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 AGGTV+EPISRHPTKRTHM+VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM Sbjct: 181 AGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKG 262 AHITHPLVGD VYGGRPRPPK Sbjct: 241 AHITHPLVGDQVYGGRPRPPKA 262 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 180/296 (60%), Positives = 225/296 (76%), Gaps = 1/296 (0%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 GQRLDQALA+ +PDYSRSRI++WI +L++G+V +P+ VLGGE V + AEIEE Sbjct: 15 GQRLDQALAKCWPDYSRSRIQDWIKSGEILLDGEVA-RPRATVLGGESVELLAEIEEAVA 73 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 136 PQDIPLDI+YED+ II++NK D+VVHP AGNPDGT++NALL + P + VPRAG+VH Sbjct: 74 AVPQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHDPSLVSVPRAGVVH 133 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKR 196 RLDK T+G+MVVAKT+ A LVE+L R+I REY+ V +GH+ AGGTVD PI RHP R Sbjct: 134 RLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAGGTVDAPIGRHPRDR 193 Query: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256 AV GK AVTHYR+++H+ T LR++LETGRTHQIRVHMAHI HP++GDPVYGGR Sbjct: 194 QRQAVTATGKRAVTHYRVLQHYGEQTWLRVQLETGRTHQIRVHMAHIRHPVIGDPVYGGR 253 Query: 257 PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 PR P AS A I LR F+RQALHA L L HP++G +M + AP+P DM ELI ++ Sbjct: 254 PRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMPDDMRELIALL 309 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 340 bits (872), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 166/306 (54%), Positives = 216/306 (70%), Gaps = 1/306 (0%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV + G+R D LAE+FP++SRSR+ EWI VL+NG V +P++ V GGE V + Sbjct: 17 TVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNG-VLVRPRDPVYGGEVVWLQV 75 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 + PQDIPLDI+YEDE + +INKP LVVHPGAGNPDGT++NALLH P +A V Sbjct: 76 MPDIRTDAVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPALAAV 135 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 PRAG+VHRLDKDT+G+MVVA+T+ AQT LVE L R++ R+Y AV + + +GGTV+ I Sbjct: 136 PRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTVNAAI 195 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 RHP R M V GK AVTHYR+ E FR HT L RL+TGRTHQIRVHMAH+ HP+VG Sbjct: 196 ERHPRDRLRMEVSDTGKEAVTHYRLRERFRAHTALECRLDTGRTHQIRVHMAHLRHPIVG 255 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D +YGG + PKG ++A ++ LR F RQALHA +L HP+ + + AP+P+D+ +L+ Sbjct: 256 DRLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDLCQLL 315 Query: 310 EVMRAD 315 +R D Sbjct: 316 AALRED 321 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 336 bits (861), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 161/314 (51%), Positives = 220/314 (70%), Gaps = 1/314 (0%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A R+ L + E+ LGQR+DQ A ++ ++SR ++K+W+ + +LVNG + KPK + G Sbjct: 34 ATRLSLQVQLDESYLGQRIDQVAAMVWSEFSREKLKQWMKEGHLLVNGNIV-KPKYRCEG 92 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 E + +N E+E + +P++IPLDIVYEDEDI++INKP +VVHPGAGN T++NALL+ Sbjct: 93 NETLTLNVELEAQTNSQPENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLY 152 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + P A++ RAG+VHR+DKDT+GL+VVAK + AQ L + L + + R Y+ V G++ A Sbjct: 153 HSPKSAELSRAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIA 212 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GGT+DEPI RHP R MA+ P G+ AVTHY + E FR TR++ +LETGRTHQIRVH + Sbjct: 213 GGTIDEPIKRHPVDRVKMAILPGGRDAVTHYNVKERFRDFTRVQAQLETGRTHQIRVHFS 272 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 +I H LVGD VY R R P GASE I TLR F RQALHA L L HP +G EM + AP Sbjct: 273 YIGHGLVGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPW 332 Query: 302 PQDMVELIEVMRAD 315 P+D +L+ V+R + Sbjct: 333 PEDFTQLVNVLRTE 346 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 218/318 (68%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 A R++L + G RLDQ LA++FPDYSRS+++ WI V V+G K +EKV Sbjct: 6 CASRIELKKIIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVR 65 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 + + I A++E R+ PQ IPLD++YEDE +++INKP L+VHPGAG D T++NALL Sbjct: 66 ENQFIEIEAQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALL 125 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HY P ++ VPRAGI+HRLDKDT+GL+++A+T+ + L+++++ R+I REYEA+ G + Sbjct: 126 HYDPSLSVVPRAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLI 185 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 +G T++ P+ RHP RT MAV G+PA+TH+RI++ +R HT +R++LETGRTHQIRVHM Sbjct: 186 SGRTIEAPVGRHPIHRTRMAVVEFGRPAITHFRIIKRYRAHTHIRVQLETGRTHQIRVHM 245 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHI HPL GDPVYG P S+ + L+ RQALH L+ HP+ M HAP Sbjct: 246 AHIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAP 305 Query: 301 IPQDMVELIEVMRADFEE 318 +P DM L+E + D+ + Sbjct: 306 LPADMAHLLECLEDDYSQ 323 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 324 bits (831), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 159/311 (51%), Positives = 213/311 (68%), Gaps = 2/311 (0%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ + +GQR+D A+A+M P+YSR +I WI L++ K KPKEKVLGGE + Sbjct: 4 LSVIIPNRFIGQRIDAAMAQMLPNYSRVKITYWIKSGDALIHHKTF-KPKEKVLGGEVIT 62 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 ++ +IE+ + QDI +D+VYEDE III+NKP +LV HPG N GT+ NALLHY + Sbjct: 63 LSIKIEKTNAWLAQDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSL 122 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 A++ RAGIVHRLDK+T+GLMVVA++ AQ L LQ I+REY A+ GHM +GGTVD Sbjct: 123 ANLDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISGGTVD 182 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 +PI R P R V GK A+THYR++E F HT +++ LETGRTHQIRVH++ I HP Sbjct: 183 KPIGRDPKDRIRQTVTESGKDALTHYRVIERFAHHTHVKVMLETGRTHQIRVHLSFIGHP 242 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+ DP+YGG+ R PK A + ++L+ F+RQ LHA L L HP S M W P+PQDM Sbjct: 243 LIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQDMQ 302 Query: 307 ELIEVMRADFE 317 +L++V+ A F+ Sbjct: 303 DLLQVL-AKFD 312 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 221/311 (71%), Gaps = 8/311 (2%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI--- 67 V +Q G RLD L+++ P YSRS+IK WIL+++V+VN +V P++KV+ GE + I Sbjct: 9 VQVHQSGYRLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELIEIKYI 68 Query: 68 -NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 N +I + PQ+IPL+I+YED DI++INK ++VVHPG G+ GTVLNALL+ YP I Sbjct: 69 NNNDICKSEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPSI 128 Query: 127 ADVPR-AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 + + AGIV RLDKDTTGLM++AKTV A L+ S + R++ +EY+A+ G T+ G Sbjct: 129 LKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAGV 188 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 V++P+ RH KRT M+VH GK AVT+Y ++E F+ H+R+R+ L+TGRTHQIRVHMA+I Sbjct: 189 VNQPMRRHFAKRTFMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGRTHQIRVHMAYIN 248 Query: 245 HPLVGDPVYGGRPR--PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 HPLVGD Y G K S+ + L F+RQALHA L+L HPI+ ++M+W+AP+P Sbjct: 249 HPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPLP 308 Query: 303 QDMVELIEVMR 313 QD+++LI +++ Sbjct: 309 QDILQLIAILK 319 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 320 bits (820), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 163/306 (53%), Positives = 209/306 (68%), Gaps = 3/306 (0%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 T+S + G RLD AL + P++SRSR++ WI V V+GK K KV GGE+V+++ Sbjct: 16 TISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGK-ASTAKTKVWGGEKVSVDV 74 Query: 70 EIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 +++ E+R F QDIPLDIVYED+ I+++NKP +VVHP AGN DGT+LNALL + P + D Sbjct: 75 QVKPESRAFIAQDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQLHD 134 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188 VPRAGIVHRLDK+T+GL+VVAKT+ AQT LV LQ R + REY A+ G + G VD+P Sbjct: 135 VPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLWRNGVVDQP 194 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 + R P RT MA++ MGKPA+T Y I+E F V T LR LETGRTHQIRVHM H+ PLV Sbjct: 195 LGRDPRSRTKMAINRMGKPAITRYEILERFSVQTYLRCNLETGRTHQIRVHMQHLKAPLV 254 Query: 249 GDPVYGGRP-RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 GDPVYG R P + ++ + +F RQALHA L L HP + MEW + DM Sbjct: 255 GDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQIELADDMKV 314 Query: 308 LIEVMR 313 L+E MR Sbjct: 315 LLEAMR 320 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 318 bits (815), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 148/299 (49%), Positives = 209/299 (69%), Gaps = 3/299 (1%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G+RLDQ L+++F YSRS +K+WI+ V +NGK+ ++P +K+LGGE++ I + E+ Sbjct: 17 GKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIYSTDEKLPI 76 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 136 PQ+I L+ +YED +I+IINKP LVVHPGAGN DGT+LNALL+ Y I+ +PR GI+H Sbjct: 77 NLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNISSIPRCGIIH 136 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKR 196 RLDKDT+GLMV+AKT+ + +LV L++R+I R+Y+ + G+M +GG V+ PI RHP KR Sbjct: 137 RLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISGGIVNYPIMRHPFKR 196 Query: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256 M +GK ++THY+I+ F+ HT + RLETGRTHQIRVHM HI +PL+GDP+YGG Sbjct: 197 ICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHMLHIGYPLLGDPLYGGI 256 Query: 257 PRPPKGASEAFISTLRKFD--RQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 E + RKF+ RQALHA + HP + M W A +PQDM +++ ++ Sbjct: 257 DYGCNYFQENR-NIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLPQDMKDILLYLK 314 >UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUD_BUCBP Length = 317 Score = 313 bits (803), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 146/316 (46%), Positives = 218/316 (68%), Gaps = 1/316 (0%) Query: 1 MAQRVQLTATVSE-NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M +++L A V + + L RLDQ LA +F +SR+ +K IL + V VNG++ D+P KV Sbjct: 1 MQNKLKLIAIVPKISLLKNRLDQVLASLFKKHSRTILKRHILSKDVCVNGRILDQPDAKV 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 L + ++IN + + + ++ ++I L+++YED+DI++INK + VVHPGAGN GT+LNAL Sbjct: 61 LYKDIISINLKFKAKNDYQAENIFLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNAL 120 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 LH ++PRAGIVHRLDKDTTGLMV+AK + L++ ++ +++ REY+A+ G + Sbjct: 121 LHRDSTFFNIPRAGIVHRLDKDTTGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKV 180 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +GGT+ + I R+P KRT M V+ GK A+THYRI++ F HT L++ LETGRTHQIR H Sbjct: 181 ISGGTIVKSIIRNPIKRTTMIVNKCGKRAITHYRILKRFTHHTHLKIILETGRTHQIRTH 240 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M +I PLVGD YG + + K S + ++KF RQALHA+ L LYHP++ MEW++ Sbjct: 241 MLYINFPLVGDKTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNS 300 Query: 300 PIPQDMVELIEVMRAD 315 +P+DM+ LI ++ + Sbjct: 301 TLPRDMLNLIALLNKN 316 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/299 (53%), Positives = 201/299 (67%), Gaps = 11/299 (3%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 GQRLDQ LA + +SRSR+++WI + RV V G V +P+ ++ GGE +A+ +E A Sbjct: 39 GQRLDQVLARLLSQHSRSRLQDWIREGRVAVGGAVTVEPRFRLWGGETIALTESTDERAE 98 Query: 77 FE-PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 P++IPL IV+ED+ +I+++K LVVHPG+GN GT+LN LLH+ P +A VPRAGIV Sbjct: 99 ASAPEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLARVPRAGIV 158 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLDKDTTGLMVVAKT+ AQT LV LQ R + R Y+A+ G + G VD PI RHPT Sbjct: 159 HRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGAGIVDAPIGRHPTV 218 Query: 196 RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY-G 254 RT MAV G+PA THYR++E F T + LETGRTHQIRVHM I HPLVGDP+Y G Sbjct: 219 RTRMAVVSGGRPARTHYRVLERFVACTLIECALETGRTHQIRVHMTSIAHPLVGDPIYGG 278 Query: 255 GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 G R P+GA F RQALHA L L HP SG M W + +P DM LI+ +R Sbjct: 279 GASRVPQGAV---------FPRQALHACRLALVHPASGKAMLWRSGVPADMAALIDRLR 328 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/316 (45%), Positives = 203/316 (64%), Gaps = 5/316 (1%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + +Q +V QR+D LA + P+YSRS I WI V +N C KPK+K L Sbjct: 1 MIEHIQQQLSVPRELHNQRVDSVLARLLPEYSRSLICNWIKTGAVTLNNLPC-KPKDKAL 59 Query: 61 GGEQVAINAE---IEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 GG+ + IN + + +P++IP+ I+YED ++I++NKP LVVHPGAGN + T++ Sbjct: 60 GGDLITINVNHTIVNTDFNLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLV 119 Query: 117 NALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 NALLH+ P + +PRAGI+HRLDKDTTGL++VAK + + T L+ +Q REI R Y + Sbjct: 120 NALLHHCPELQLLPRAGIIHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVH 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G++ +GGT+D RHP R MAV G+ AVTHY I +H++ T L + L TGRTHQI Sbjct: 180 GYVISGGTIDTGFGRHPKNRLKMAVTDFGRQAVTHYNINKHYKDFTLLNVSLMTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM +I HP+VGD +YGGR + P A EA +S L++F RQALHA + HP+ E+ Sbjct: 240 RVHMNYINHPVVGDQLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEIT 299 Query: 297 WHAPIPQDMVELIEVM 312 +A +P D L+ + Sbjct: 300 LNALLPDDFELLLNTL 315 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 296 bits (758), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 155/305 (50%), Positives = 200/305 (65%), Gaps = 7/305 (2%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV-AIN 68 TV +N G RLDQALA++ P +SRSR++ WI +Q+ + K+KV GGE + I Sbjct: 35 TVPDNLAGLRLDQALAQLLPQWSRSRLQGWI-EQKCVSVDSAAATCKQKVWGGESIRVIA 93 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 + E + + + IPL I++ED+ +III+KP LVVHPG GN GT+LNALL++ P ++ Sbjct: 94 GQTENDQSHQAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQLSQ 153 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188 VPRAGIVHRLDKDTTGL+VVAKT+ AQ L LQ+R + R Y A+ +G + G VD P Sbjct: 154 VPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVVDAP 213 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I RHP RT MAV GKPA THYR++E F T L LETGRTHQIRVH+ I HPL Sbjct: 214 IGRHPIHRTRMAVVQNGKPARTHYRVLEKFTASTLLHCSLETGRTHQIRVHLLSIGHPLA 273 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GDPVY GR P ++A + + RQALHA L L HP SG + W +P+P DM L Sbjct: 274 GDPVY-GRTSPDPSTADAVV----RLPRQALHAWQLELTHPHSGQILLWESPLPDDMAAL 328 Query: 309 IEVMR 313 ++ +R Sbjct: 329 LQAIR 333 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 290 bits (741), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 144/306 (47%), Positives = 197/306 (64%), Gaps = 3/306 (0%) Query: 16 LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA 75 G RLD L+ + P++SRS+I+ I + + +NG + KV+GGE++ IN IE+E Sbjct: 17 FGSRLDAVLSNLVPEFSRSKIQSMIKNDLIFLNGSHVSQ-NYKVVGGEEIVINGVIEDEI 75 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 ++I LDIVYED+DI+++NKP +LVVHPG+GN +GT+LN LL+Y + +PR GIV Sbjct: 76 DVIAENISLDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLEKLPRGGIV 135 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLDKDTTGLMVVAK +Q L+ LQ + + REY A+ G + + +PI RHP + Sbjct: 136 HRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNKVIQKPIGRHPRQ 195 Query: 196 RTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 254 RT MAV + GK A T I+E F HT +R L+TGRTHQIRVHM P+VGD YG Sbjct: 196 RTKMAVTKVNGKDAETKLEILERFNYHTYVRCLLKTGRTHQIRVHMLDNNSPIVGDKDYG 255 Query: 255 -GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 + P K + +++ FDRQALHA L L HP + EM+W +P+DM EL+ V+R Sbjct: 256 LKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDMKELLSVIR 315 Query: 314 ADFEEH 319 D E+ Sbjct: 316 KDSVEN 321 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 152/306 (49%), Positives = 200/306 (65%), Gaps = 5/306 (1%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA--IN 68 V N RLDQ LA +P++SR+R ++ I VL+NG K K V G+Q+ + Sbjct: 14 VDHNNHALRLDQVLARNYPEFSRNRWQDAINAGTVLLNGAAA-KSKSLVCAGDQITGVLT 72 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 EI+ E Q++PL+I+Y D+DII+INKP LVVHP GN D T+LNALL+++P Sbjct: 73 QEIQTED--SAQNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKH 130 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188 +PR+GIVHRLDKDT+G MV+A + A T LV LQ R + R Y A+ G++TAG T+D P Sbjct: 131 LPRSGIVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTIDLP 190 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I RH R MAV P GKPA+THYRI E ++ T LR++LETGRTHQIRVH++H HPLV Sbjct: 191 IGRHAKDRLKMAVRPDGKPAITHYRIEERWQTLTLLRVQLETGRTHQIRVHLSHHRHPLV 250 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD +YG RP +E L +F RQALHA L L+HP + M + AP+P DM +L Sbjct: 251 GDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMTQL 310 Query: 309 IEVMRA 314 ++RA Sbjct: 311 FTILRA 316 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/300 (51%), Positives = 197/300 (65%), Gaps = 7/300 (2%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE-IEEEA 75 G RLD LA++ PDYSRSR+ WI + V+VN K +PK+K++GGEQ+ + EE Sbjct: 38 GGRLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDK-PSQPKDKMIGGEQIRVTVRPSEENL 96 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 F P+ + LDIVYED+ +I++NKP LVVHP AGN GT+LN LL + P ++ +PRAGIV Sbjct: 97 AFVPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQIPRAGIV 156 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLDK+T+GLMVVAKT+PAQ LV LQ R + R Y AVA G + G ++ I R P Sbjct: 157 HRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFDGKIETQIGRDPHN 216 Query: 196 RTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 254 R MAV GKPAVTH +++E + H+ + LETGRTHQIRVHM HPL GDPVY Sbjct: 217 RLKMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETGRTHQIRVHMREANHPLAGDPVY- 275 Query: 255 GRPRPPKGAS-EAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 G PR P G + + + +L RQALHA L HP SG + + APIP D+ L+ V+R Sbjct: 276 GNPRHPCGDTVKEAVKSLGA--RQALHAYRLSFTHPESGETVSFEAPIPDDIYHLLSVLR 333 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 273 bits (698), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 151/311 (48%), Positives = 198/311 (63%), Gaps = 19/311 (6%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE-IEEEA 75 G+RLD+ALA++ PDYSRSR+++WI V V G +P+ V GG+++ + + ++E Sbjct: 49 GERLDKALAKLLPDYSRSRLQQWIDAGAVRVGGAAV-RPRAAVCGGDRIEVVPQRADDEN 107 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 F + + LD+VYED+ +++INKP LVVHP AGN GTVLN LLH YP A +PRAGIV Sbjct: 108 AFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQAAGLPRAGIV 167 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLDK+T+GLMVVA+T+PAQT LV LQ R + R Y A+ G GT+D PI R P Sbjct: 168 HRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTIDAPIGRDPRD 227 Query: 196 RTHMAV--HPMGKPAVTHYR---IMEHFRVHTRL-RLRLETGRTHQIRVHMAHITHPLVG 249 RT MA+ GKPA TH++ +++ R L + +LETGRTHQIRVH HPL+G Sbjct: 228 RTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVHFESEGHPLLG 287 Query: 250 DPVYG-----GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 DPVY GRP+ K A F RQALHA L L HP SG + WHA +P D Sbjct: 288 DPVYTRNFRRGRPQTIKAPLPA------PFARQALHAVRLGLVHPASGQSVHWHAGVPDD 341 Query: 305 MVELIEVMRAD 315 + EL++ + D Sbjct: 342 LAELMDALEMD 352 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 269 bits (688), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 137/307 (44%), Positives = 202/307 (65%), Gaps = 5/307 (1%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV++ Q GQR+D+ A+MF ++SR+++++W+ + VN +K K +V G+ V + A Sbjct: 108 TVTQEQAGQRIDKLAADMFTEHSRAQLQDWLKSGNLTVNDH-NEKAKYRVKIGDIVRLEA 166 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 ++E+ +P+DI LDI+YED+ +I+INKP +VVHPGAGN GT++N LL++YP A + Sbjct: 167 KLEQHGSDQPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHL 226 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG---HMTAGGTVD 186 PRAG+VHR+DK+T+GL+V+ KT AQ L E L+ + + R Y+ V G + T+D Sbjct: 227 PRAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTID 286 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTH-YRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI RH T+RT M V GK A+TH +I ++ L +RLETGRTHQIRVH++HI H Sbjct: 287 APIGRHRTQRTKMTVTSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQIRVHLSHIGH 346 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P++GD +YG R + G + ++ F RQALHA L HP +G +E AP+PQD+ Sbjct: 347 PIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLPQDI 406 Query: 306 VELIEVM 312 VEL + Sbjct: 407 VELAHTL 413 >UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057H9_BUCCC Length = 321 Score = 263 bits (671), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 194/301 (64%), Gaps = 6/301 (1%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF- 77 RLD+ L + +SRS IK+WIL + VN +KPK+K+L +++++ I +++ F Sbjct: 20 RLDKILVKHLNSFSRSSIKKWILSGFIKVNNITANKPKKKILFKDRISL--IINKKSNFI 77 Query: 78 --EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 + ++I L+I++ED +I+IINKP + VVH G GN GT+LNAL+ +YP +PRAGIV Sbjct: 78 KIKKENIFLNIIFEDSEILIINKPTNFVVHLGYGNTSGTLLNALIFHYPDNLLIPRAGIV 137 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLD++TTG++VVAKT+ L+ ++R+I +EY+ + IG + G +++PI R Sbjct: 138 HRLDRNTTGILVVAKTISTYYFLINLFKKRKIIKEYDVIVIGRIEVDGKIEKPIKRDIYN 197 Query: 196 RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG- 254 RT M V GK A+T+Y ++ F+ HT LR++L+TGR HQIRVH++ I HP++GD +Y Sbjct: 198 RTKMTVGIGGKQAITYYSVITIFKNHTYLRIQLKTGRMHQIRVHLSSIFHPVLGDKIYSK 257 Query: 255 GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 G S+ + L KF+R ALHA ML HP + + W P+DM+ LI V+ + Sbjct: 258 GIKSNFSNCSKKMKNFLSKFNRPALHARMLNFIHPKTNKKKNWIIYPPKDMLSLINVLYS 317 Query: 315 D 315 + Sbjct: 318 E 318 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 262 bits (669), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 137/307 (44%), Positives = 197/307 (64%), Gaps = 14/307 (4%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G+R+D A+ E F +SR++I++W+ + + VNG+ KPK VLG E+V IN E+ Sbjct: 22 GKRIDVAINEQFEQFSRAQIQKWLKEGSITVNGRAT-KPKHIVLGDEEVEINIELLPTNE 80 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 136 + +DI L I++ED+DII+I+KP +++VHPGAGNP GTV NALLH Y +PRAGIVH Sbjct: 81 WIAEDINLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQDKLPRAGIVH 140 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKR 196 RLDKDT+GLMV AK+ A LV+ L R+++R+Y A+ G + GT+++PI R PT R Sbjct: 141 RLDKDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQGTINQPIGRDPTNR 200 Query: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256 T MA++ GK A+T+Y +E + T + +LETGRTHQIRVHM I HPLVGD Y Sbjct: 201 TKMAINYRGKEAITYYTPIEVYDGFTLIECQLETGRTHQIRVHMKSIKHPLVGDQTYN-- 258 Query: 257 PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL-------I 309 K +++ + RQALHA L HP + +++ + +P+DM+ L + Sbjct: 259 ----KSSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDMLNLKAQLEQTV 314 Query: 310 EVMRADF 316 E++ DF Sbjct: 315 EMLDEDF 321 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 133/311 (42%), Positives = 201/311 (64%), Gaps = 8/311 (2%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV+ Q+G+R+D+ A +F DYSR +IK W+ + VNG KPK ++ + + + A Sbjct: 70 TVNSEQIGERIDKIAALVFSDYSREQIKNWLESGELTVNG-AAQKPKYRLKPNDMLVLKA 128 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 + + + P++IPLDI+YEDE +++INKP LVVHPGAGN GT++NALL +YP + Sbjct: 129 SLTAQQQDLPENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLFHYPDSRTL 188 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI---GHMTAGGTVD 186 PRAG+VHR+DK+T+GLMV+AK +Q L+ L+ + + R Y+A+ + + T+D Sbjct: 189 PRAGLVHRIDKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAELARHRTID 248 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHY-RIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI RHPT+RT MAV GKPAVTH +I + + +RLETGRTHQIRVH++++ Sbjct: 249 APIGRHPTQRTKMAVVSSGKPAVTHLEKITAISDAVSLVSVRLETGRTHQIRVHLSNLGF 308 Query: 246 PLVGDPVYGGRPRPP---KGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 PL+GDP+YG + K + +++F RQALHA L HP +G ++ A +P Sbjct: 309 PLLGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEPIKVQARLP 368 Query: 303 QDMVELIEVMR 313 +DM +L++ ++ Sbjct: 369 EDMQQLLDTLK 379 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 195/310 (62%), Gaps = 12/310 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT + E G+RLD+ALA + PD SRSR+++W++ V VNG + + + G+ V Sbjct: 33 LTLRIDERYAGERLDKALAFLIPDVSRSRLQQWVVAGAVTVNGGAV-RARHTLTFGDVVK 91 Query: 67 INAE-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + + A ++P+ +PL++++ED+ I+++NKP LVVHP AG+ GT+LN LL Y P Sbjct: 92 VTPQPAPDAAAYKPEPMPLEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPT 151 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + DVPRAGIVHRLD DT+GLMVVAKT+ AQT LV LQ R +TREY A+ +G + G + Sbjct: 152 LIDVPRAGIVHRLDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQRGVI 211 Query: 186 DEPISRHPTK--RTHMAVHPMGKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVH 239 D I R P R ++ KPA THY ++ + + L RLETGRTHQIRVH Sbjct: 212 DAAIGRDPRNPLRFKVSTTEAAKPARTHYATLDSTKNAGADISWLACRLETGRTHQIRVH 271 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + H+ HPL+GDPVY R PP+G A ++FDRQALHA L L HP+S + W Sbjct: 272 LEHVGHPLIGDPVYRRR-LPPRGEPAA---RWKEFDRQALHACRLALDHPVSRQRLNWFH 327 Query: 300 PIPQDMVELI 309 D+ +L+ Sbjct: 328 SPAADLAQLM 337 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 146/300 (48%), Positives = 188/300 (62%), Gaps = 20/300 (6%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE-IEEEA 75 G RLD+ L+ + P YSRSR+++WI V V+G+V + K V G E+V I + E+ Sbjct: 48 GVRLDKVLSTLVPQYSRSRLQQWIDGGHVSVDGEVA-RAKMTVYGDEKVVIYPQPAPEDE 106 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 F+P+ + L IV+ED ++++INKP LVVHP AGN GT+LN LLHY P I+ VPRAGIV Sbjct: 107 AFKPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVPRAGIV 166 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLDKDT+GLMVVAKT+ A T LV LQ R + REY A+ G G +D I RH Sbjct: 167 HRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPNITGKIDASIGRHARD 226 Query: 196 RTHMAV--HPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPLVG 249 R MAV + KPAVTH++ + + R + RLETGRTHQIRVHM I LVG Sbjct: 227 RIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIGFALVG 286 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D +YG + ++T+ F RQALHA L L HP+SG +EW + +PQD ELI Sbjct: 287 DGLYG----------KQHLTTV--FPRQALHARRLGLIHPVSGEAVEWSSELPQDFAELI 334 >UniRef50_Q8D220 Pseudouridine synthase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D220_WIGBR Length = 314 Score = 247 bits (630), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 197/309 (63%), Gaps = 14/309 (4%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 +S+N G+RLD+++AE+FP+YSR++IK++I++ +V VN PK+ + GGE + I Sbjct: 11 TCISQN--GKRLDKSIAEIFPEYSRNKIKKFIINNQVKVNDICIINPKKNIKGGECIKIK 68 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 ++ + ++YED+DI++INK +D++VHPG + T+L+ +L YP + Sbjct: 69 IS-KKNNLISKKRKTYKLIYEDDDILVINKYKDVIVHPGCDKHENTLLHDILFNYPDSKN 127 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188 + RAGIVHRLDKDTTGLM++A+ +Q +L++ L+ R I REY AV +G + GTV P Sbjct: 128 LYRAGIVHRLDKDTTGLMLIARNSFSQKKLIKLLKLRLINREYRAVLLGKIICDGTVSAP 187 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I R+ RT M VH GK ++THY+I+++F + +++ LE+GRTHQIR+HM++I HP++ Sbjct: 188 IIRNSKNRTRMKVHISGKESITHYKIIKNFNDFSYVKINLESGRTHQIRLHMSYINHPVL 247 Query: 249 GDPVYGGRPRPPKGASEAFISTLRK----FDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 GD VYG + +I TL K R ALHA ++ HPI+ M +P D Sbjct: 248 GDFVYGNKK-------NKYIKTLYKSIFNISRHALHARKIKFIHPINNCLMVHKIDLPDD 300 Query: 305 MVELIEVMR 313 M L++ ++ Sbjct: 301 MKILLKNLK 309 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 190/315 (60%), Gaps = 17/315 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T + +Q G+RLD+ L M P SR+ +++ I + + LV+G+V K K+ GE+V Sbjct: 5 TKVYTADQDGERLDRFLTRMEPTLSRAHVQKVIAEGQALVSGRV-RKANYKLQAGEKVTF 63 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + + P+DIPLDI+YED DII+INK R +VVHP G GT++NALL++ ++ Sbjct: 64 HLPEAKPVEILPEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLS 123 Query: 128 DVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGG 183 + R GIVHRLDKDT+G+MV AK A L E ++ + R Y A+ G++ G Sbjct: 124 GINGEIRPGIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAG 183 Query: 184 TVDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 + I RHPT R MA VH GKPAVTH+R++E F +T + RLETGRTHQIRVHMA Sbjct: 184 VIKGDIGRHPTDRKKMAIVHEHGKPAVTHFRVLERFGAYTLVECRLETGRTHQIRVHMAS 243 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HP++GDP YG R P QALH+ L L HP + M + AP+P Sbjct: 244 IGHPVLGDPKYGPRKACPFA-----------IKGQALHSLQLTLTHPRTREVMTFTAPLP 292 Query: 303 QDMVELIEVMRADFE 317 +DM ++++ +RA F+ Sbjct: 293 EDMEKILKALRAKFQ 307 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 136/310 (43%), Positives = 186/310 (60%), Gaps = 12/310 (3%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVN-GKVCDKPKEKVLGGEQVAIN 68 T++E +G RLD+ALA + SR R+K I V + G + P K+ + ++ Sbjct: 7 TLTEEMIGWRLDRALASLITRLSRERLKNLISSGCVSNSQGALVRDPAFKIKSLDCFTVD 66 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YP 124 + A EPQDIPL+IV+EDE ++++NKP +VVHP AGN D T++NALL++ Sbjct: 67 IPLPRPAHNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGKLS 126 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 I V R GIVHR+DKDT+GL+VVAKT PA L I R Y A+ GH + G Sbjct: 127 GIGGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQGH 186 Query: 185 VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 VD P++R R MA+ GK AVTHYR++ + + + RLETGRTHQ+RVHM+ Sbjct: 187 VDAPLARSSVNRQKMAIVSDGRGKRAVTHYRMITPLKNASLIECRLETGRTHQVRVHMSS 246 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I H L+GDPVYG K A A + +L F RQALHA L HPISG ++++ A +P Sbjct: 247 IGHSLLGDPVYG----RSKKAHHALLQSL-AFQRQALHAAHLGFIHPISGKQVDFDAEMP 301 Query: 303 QDMVELIEVM 312 QDM L +++ Sbjct: 302 QDMQLLFKML 311 >UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6Q916_9GAMM Length = 311 Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 187/306 (61%), Gaps = 1/306 (0%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TVS+ RLD+ +F D+SR++IK+WIL+ RV +N + P++ V G+ + I+ Sbjct: 6 TVSKEHSKMRLDKVSTIIFEDFSRTQIKKWILEGRVFLNDDIA-SPRDLVHEGDSIQIDP 64 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 EE+ + P++I +D++YE++D +IINK +L++HPGAG GT+ NALLH+YP + ++ Sbjct: 65 IAEEKISWVPEEIDIDVIYENDDYLIINKQPNLIMHPGAGCSSGTLANALLHHYPELKNI 124 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 RAGIVHRLDKDT+G+++VA+ + V+ LQ+RE+T+ Y A+ +G + V +PI Sbjct: 125 ARAGIVHRLDKDTSGVILVARNDKFRNYFVDLLQKREVTKLYSAIVVGTIIGSFKVTDPI 184 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 R R M++ GK + T ++ E ++ L + + TGRTHQIRVH++ P++G Sbjct: 185 GRDKKNRVKMSIRSDGKESETFVKLKESLGNYSLLDISIMTGRTHQIRVHLSSKKLPIIG 244 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D Y KG S I +++F RQALHA L + ++ IP DM LI Sbjct: 245 DNTYNPAKNIAKGTSSKLIDIIKQFPRQALHAYQLSFKDMHTDEFKTFNCDIPDDMKYLI 304 Query: 310 EVMRAD 315 ++++ D Sbjct: 305 DILKKD 310 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 136/320 (42%), Positives = 186/320 (58%), Gaps = 12/320 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT + + GQRLD+AL FPD +RS ++ WI ++RV+V+ +V P +KV G+ + Sbjct: 10 LTTLLHADDAGQRLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHII 69 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---- 122 I E + P++I L+I++EDE +I++NKP +VVHPGAG GT++NALL++ Sbjct: 70 IYPSEPEPSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTP 129 Query: 123 ------YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 I V R GIVHRLDK+T+G+MV AK A L ++R I R Y A+ Sbjct: 130 DNPHGGLSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTR 189 Query: 177 G-HMTAGGTVDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 G A G ++ I RHP RT MA V G+ A T Y+++E +R RLE+GRTH Sbjct: 190 GIPQPAQGRIEGAIGRHPIHRTKMAVVEQGGRAAATRYKVLEPLGQFALIRCRLESGRTH 249 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM HI HPLVGDP+YG + + P +F RQALHA L HP +G E Sbjct: 250 QIRVHMTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEE 309 Query: 295 MEWHAPIPQDMVELIEVMRA 314 M + P P D +L E + A Sbjct: 310 MSFKRPPPADFRQLYETLAA 329 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/313 (42%), Positives = 193/313 (61%), Gaps = 16/313 (5%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++L +SE + G+RLD+ +A SRS +++ + +LVNG+ C KP ++V G++ Sbjct: 9 IRLVLQISEREHGERLDKLIASRVTGMSRSFVQQLMKRGAILVNGEPC-KPAQRVRYGDR 67 Query: 65 VAIN-AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + +E EP+ +P+ ++YED+DII+ +KP +V HP G+ GT++NAL Sbjct: 68 LEVYLPPVEPPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKAIR 127 Query: 124 PPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 P + P R GIVHRLDKDT+GL+VVAKT A+ L+E Q R + ++Y A+ G + Sbjct: 128 PDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVVEP 187 Query: 182 -GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GT+D PISR P +RT MAV G+PA+TH+R++E FR T L + +ETGRTHQIRVH Sbjct: 188 DSGTIDAPISRDPVERTKMAVVSWGRPAITHFRVLERFRCATLLDVTIETGRTHQIRVHC 247 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 A I HP+VGD YGG RP F + RQ LHA LR HP +G +E P Sbjct: 248 AFIGHPVVGDSQYGGH-RP-------FCVPV---PRQFLHARYLRFVHPTTGQAIELETP 296 Query: 301 IPQDMVELIEVMR 313 +P D+ ++E +R Sbjct: 297 LPYDLRTVLEALR 309 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 230 bits (586), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 129/308 (41%), Positives = 179/308 (58%), Gaps = 5/308 (1%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V+ + G RLD LA +SR+R++ I RV ++GK + +K+ G+ V + Sbjct: 12 VTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQKLRTGDIVMLEEP 71 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIA 127 PQDIPL I+YED D+++++KP LVVHP AG+ GT++NALL + I Sbjct: 72 PATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIG 131 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVD 186 V R GIVHRLDKDT+GL+VVAKT A L ++ ++ + Y+A+ G G +D Sbjct: 132 GVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQID 191 Query: 187 EPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 P+ RHP +R M+ GK A T +RI E F V T L + + TGRTHQIRVH+A I H Sbjct: 192 LPVGRHPVERKKMSTKSRRGKEAATRWRIAERFGVATLLNVDIVTGRTHQIRVHLAAIGH 251 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD VYG R A L++ RQALHA L HP++ +E+HAP+P DM Sbjct: 252 PVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPLPADM 311 Query: 306 VELIEVMR 313 +L +R Sbjct: 312 EDLCAFLR 319 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 131/320 (40%), Positives = 188/320 (58%), Gaps = 10/320 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 T + +RLD+ L E P+ SRS++K+ I D RVL++G KP K+ GGE + Sbjct: 5 FTLCFGRERSPERLDRFLVEQLPELSRSQLKKLIDDGRVLLDGAAA-KPGSKLKGGETLT 63 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 ++ A +DIPL I+YED +I+I+KP +VVHP G+ GT++NALLH+ + Sbjct: 64 VDVPDPSPAEAVSEDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDL 123 Query: 127 ADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 + + R GIVHRLDKDT+G+MV KT A L + ITR Y A+ G +T Sbjct: 124 SGIGGELRPGIVHRLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDR 183 Query: 183 GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF---RVHTRLRLRLETGRTHQIRV 238 G++D PI RHPT R M+ G+ AVTH+R++ F R+ T + L LETGRTHQIRV Sbjct: 184 GSIDRPIGRHPTHRKKMSTTCRTGRHAVTHWRVLRRFDDDRL-TLVELALETGRTHQIRV 242 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H + HPL+GDPVYGG R + + RQALHA +L HP +G +E+ Sbjct: 243 HFSEQQHPLLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFS 302 Query: 299 APIPQDMVELIEVMRADFEE 318 +P+P+D+ +I+ + + + Sbjct: 303 SPLPEDLRSVIDYLTEKYGQ 322 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 138/311 (44%), Positives = 180/311 (57%), Gaps = 22/311 (7%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 VS+N QRLD L+ + SRSR+++ I VL+N +VC K V G+++ + Sbjct: 28 VSQNT--QRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRICVEIP 85 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIA 127 + + +DIPLDI+YEDE ++I+NKP LVVHP G+ DGT++NALL + P I Sbjct: 86 SLQPLKLVAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIG 145 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGTVD 186 V R GIVHRLDKDTTG + +AKT A L LQ + REY V G T G ++ Sbjct: 146 GVQRPGIVHRLDKDTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIIN 205 Query: 187 EPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 PISRHP R MA+ P G+ A+TH++I E +T + +LETGRTHQIRVH A I Sbjct: 206 LPISRHPQDRKKMAIVPTEQGGRTAITHWQIRERLSNYTLIHFQLETGRTHQIRVHSAKI 265 Query: 244 THPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 HP+VGD VYG GR S ALHA L+L HPISG ++ A P Sbjct: 266 GHPIVGDSVYGAGR------------SVGVNLAGHALHAWQLKLQHPISGDWIQVTASPP 313 Query: 303 QDMVELIEVMR 313 Q L+EV+R Sbjct: 314 QTFTTLLEVLR 324 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 141/319 (44%), Positives = 184/319 (57%), Gaps = 19/319 (5%) Query: 3 QRVQLTA-TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 Q + +TA V+E LG RLD+ LAE P+ SRSR ++ I +V NG VC + Sbjct: 16 QELLVTADGVAEGTLGVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKT 75 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+++ +N Q+IPLDI+YEDE +IIINKP LVVHPG G+PDGTV+NALL Sbjct: 76 GDRLVVNIPELIPLDVVAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLA 135 Query: 122 YYPPIA---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + P +A V R GIVHRLDKDTTG MVVAKT A L L+ + R Y + G Sbjct: 136 HCPDLAGIGGVQRPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGS 195 Query: 179 -MTAGGTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 GTV+ P+ RHP R M + P+ G+ AVTH+R++E H+ L +LETGRTH Sbjct: 196 PKEIQGTVNLPVGRHPGDRQKMGIVPVEKGGREAVTHWRLLERIGNHSWLEFQLETGRTH 255 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH + HPLVGD +Y S ++ QALHA L L HP+SG Sbjct: 256 QIRVHSKQMGHPLVGDNLY---------TSPGSVNV--NLPGQALHAHQLSLIHPVSGEI 304 Query: 295 MEWHAPIPQDMVELIEVMR 313 + AP+P +L+ +R Sbjct: 305 ITAIAPMPAHFEKLLVYLR 323 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 136/309 (44%), Positives = 183/309 (59%), Gaps = 16/309 (5%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI---NA 69 E Q G RLD+ L ++ P SRS I++ I D V VNG+ K K+ G E + + N Sbjct: 9 EGQAG-RLDKVLTDLLPGESRSTIQKIIKDGLVSVNGQ-EQKANFKLKGDETLLVARRNL 66 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PP 125 +EE++ EP+ + LDI+YEDEDI++INKP LVVHP G+ GT++N LLHY Sbjct: 67 AVEEDSLPEPEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLST 126 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 +D R GIVHR+DKDT+GL+VVAK A L + L ++ R Y A+ G + A GT Sbjct: 127 GSDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGT 186 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ P+ R P R V GK A+T +++ME+F T L L LETGRTHQIRVH+ I Sbjct: 187 IEAPLQRDPANRLRWTVAKEGKYALTRFQVMENFENATLLDLELETGRTHQIRVHLEFIG 246 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HPLVGDPVY KG S + Q LHA L+L HP SG +E+ AP+P+ Sbjct: 247 HPLVGDPVY------RKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPRR 300 Query: 305 MVELIEVMR 313 E ++ +R Sbjct: 301 FEEALDQLR 309 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 183/312 (58%), Gaps = 17/312 (5%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE-I 71 E G RLD L+E D SRS+ K I + V+VN K + G+ V ++ + I Sbjct: 20 EKDEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWV-KASYSITSGDVVKVDTQLI 78 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD--- 128 + E PQ IPLDIVYEDE ++++NKPR++VVHPGAGN T++NALL++ ++D Sbjct: 79 QSEITLIPQSIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQNLSDGTS 138 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDE 187 R GIVHRLDKDT+GL+VVAK L E ++ R + R Y A+ IG + T+D Sbjct: 139 YERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATIDL 198 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTR---LRLRLETGRTHQIRVHMAHIT 244 PI R P R MAV GK A+T ++ F+ + L+ LETGRTHQIRVH++H+ Sbjct: 199 PIGRDPRNRKKMAVVHGGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQIRVHLSHLG 258 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 +PL+GDPVY +G + + + QALH+ L HP+ M + AP+P D Sbjct: 259 YPLLGDPVY-------RGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAPLPSD 311 Query: 305 MVELI-EVMRAD 315 M+ LI ++ R+D Sbjct: 312 MMNLISKLTRSD 323 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 223 bits (567), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 133/315 (42%), Positives = 186/315 (59%), Gaps = 19/315 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++ V+ G RLD+ LAE + SRS IK+ I + +V VNG + K KV GGE Sbjct: 4 EIKVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNG-LHRKASYKVRGGEI 62 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY-- 122 +A+ E +P++IPLDIVYEDED++++NK +VVHP GN DGT++NALL++ Sbjct: 63 IAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHCQ 122 Query: 123 -YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 I V R GIVHRLDKDT+GL+VVAK A L E ++ ++ REY + G++ Sbjct: 123 NLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKN 182 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVH 239 G +D PI RHP R MAV GK A T Y+++E F + T ++ +L TGRTHQIRVH Sbjct: 183 KEGIIDLPIGRHPRDRQKMAVVSNGKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIRVH 242 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 +++ HP++GDP YG + P RQ LHA L HP SG +E+ A Sbjct: 243 FSYLGHPVLGDPKYGHQNNP------------FGVKRQMLHAIKLSFIHPRSGELLEFTA 290 Query: 300 PIPQDMVELIEVMRA 314 P+P+D ++ +R Sbjct: 291 PLPEDFQRVLAKLRG 305 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/300 (44%), Positives = 179/300 (59%), Gaps = 19/300 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE--QVAI 67 V Q +R+D+ LA PD SR++++ I VL +G+ + + V G Q+ I Sbjct: 18 VVPPTQTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGR-SPRASQPVRPGAVIQLTI 76 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 I E EP IPLD+VYED DI +INKP +VVHP G+P GT++NALL YP +A Sbjct: 77 PPPIPTELVAEP--IPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDLA 134 Query: 128 --DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 R GIVHRLD+DT+GL+V+A+ A LV+ Q R + + Y+A+ IG GT+ Sbjct: 135 IGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETGTI 194 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D PI R P R MAV P G+PA THYR+++ F ++ L ++LETGRTHQIRVH+ H+ + Sbjct: 195 DAPIGRDPRDRLRMAVVPDGRPARTHYRLLDTFGDYSLLEVQLETGRTHQIRVHLRHLGY 254 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGDPVYG R + RQ LHA L L HP SG E+ AP+P D+ Sbjct: 255 PIVGDPVYGPR------------RSHLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADL 302 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/331 (41%), Positives = 189/331 (57%), Gaps = 21/331 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + S+ Q R+D+ L + +R++I++ + + VN V K KV G+Q+ Sbjct: 55 FSFIASKGQEPLRIDKYLMNFIENATRNKIQQAAKEGHIWVNDLVV-KQNYKVKAGDQIK 113 Query: 67 I-NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E P+DIPLD+VYED D++++NKP +VVHPG GN GT++NALL + Sbjct: 114 VMFTHPPYEFLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFH--- 170 Query: 126 IADVP-----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM- 179 + D+P R G+VHR+DKDT+GL+VVAKT A T L + + REY A+ G++ Sbjct: 171 VKDLPLNADERPGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVE 230 Query: 180 TAGGTVDEPISRHPTKRTHMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 GTV I RHP R MAV P GK AVTHY++ME T + LETGRTHQI Sbjct: 231 EEQGTVRGHIGRHPKNRLQMAVFPDGDQGKEAVTHYKVMERLGYVTLVSCVLETGRTHQI 290 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGAS----EAFI-STLRKFDRQALHATMLRLYHPIS 291 R HM HI H L D YGG + KG + + F+ + + RQALHA L HP S Sbjct: 291 RAHMKHIGHTLFNDERYGGE-KILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSS 349 Query: 292 GIEMEWHAPIPQDMVELIEVMRADFEEHKDE 322 G M ++ PIP+DMV IE RA + +H+ E Sbjct: 350 GELMRFNTPIPEDMVLCIEKWRA-YAQHQQE 379 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/310 (42%), Positives = 180/310 (58%), Gaps = 24/310 (7%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV Q G R D+ LAE ++SRS +++ + V +NG+V KP KV G+++ + Sbjct: 50 TVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDRMVLEM 109 Query: 70 E-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 ++ F+P+D+ LD+VYEDE ++++NKP LVVHP GN GT+LN LL P + Sbjct: 110 RPTQQSMAFQPEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKARE 169 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG----T 184 VPRAGIVHRLDKDT+GLMVVA++ A LV + R+++R+Y +A+ H G Sbjct: 170 VPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQY--LALAHKAWGPRKHRE 227 Query: 185 VDEPISRHPTKRTHMAVHPM----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 VD PI R P R MAV + GK A T ++ + +R L TGRTHQIRVHM Sbjct: 228 VDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHTGRTHQIRVHM 287 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 A + HPLV D VYGG+ EA RQALHA L HP++G + AP Sbjct: 288 ASLGHPLVADAVYGGK--------EAG-----GMARQALHAFRLAFTHPMTGQALVLRAP 334 Query: 301 IPQDMVELIE 310 +P DM + +E Sbjct: 335 LPPDMAQALE 344 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/319 (41%), Positives = 185/319 (57%), Gaps = 24/319 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 ++ V + VSE+ G+R+D+ L+ +YSRS +K I + +V V GK K KV Sbjct: 18 LSDEVIELSVVSEDS-GERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPV-KSSFKVT 75 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G ++I+ +EA P++IPLDI+YEDED+I+INKP+ +VVHP AG+ GT++NAL+ Sbjct: 76 EGINISISIPPVKEAEIIPENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALM 135 Query: 121 HY----YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 ++ I R GIVHR+D DTTG+++ K + + E L+ I R+Y+A+ Sbjct: 136 YHCRDNLSGINGELRPGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVY 195 Query: 177 G-HMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-----RVHTRLRLRLET 230 G G ++ I R T R MAV P GKPAVTHYR++ ++ + LET Sbjct: 196 GVFKDEEGRIEGSIGRSKTDRKKMAVIPDGKPAVTHYRVIRNYTSPNGNNFAHIECELET 255 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVHM I HPL+GD +YG P K D QALHA ML HP Sbjct: 256 GRTHQIRVHMTSIGHPLLGDEIYGAAKNP------------FKLDGQALHAEMLGFVHPR 303 Query: 291 SGIEMEWHAPIPQDMVELI 309 +G ME+HAP+P+ +L+ Sbjct: 304 TGEYMEFHAPLPEYFSKLL 322 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 177/294 (60%), Gaps = 21/294 (7%) Query: 15 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 Q RLD L + +RS+I I D V+VNG + K K+ +++ +N E +EE Sbjct: 8 QTDSRLDHFLVAS-TELNRSQITTLIKDGLVMVNG-LTTKAGYKLKNSDEITLNLEAKEE 65 Query: 75 AR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA----DV 129 +P++I L+IVYED+DI++INKP+ LVVHP + T+++ LLH+ ++ D Sbjct: 66 TNPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHNDDP 125 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEP 188 R GI+HR+DKDT+GL++VAKT A L + L+ +I REY A+ G + G +D P Sbjct: 126 LRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVIDAP 185 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I+RHP RT MAV GKPA+TH+ +M FR HT L +LETGRTHQIRVH+A+I HP+ Sbjct: 186 IARHPKIRTKMAVVATGKPAITHFEVMRTFRDHTLLHCKLETGRTHQIRVHLAYIKHPVT 245 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 GDP+YG + + K D Q LHA L HPI+ M AP+P Sbjct: 246 GDPLYGTKAKILK-------------DGQLLHAFRLEFVHPITKKVMMLEAPLP 286 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 16/304 (5%) Query: 11 VSENQLGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 +SE+++G+RLD+ LA F YSR+ + I +LVNG + K + + G++V + Sbjct: 14 ISEDEVGERLDKVLARRFNAKYSRTYFQFLIDKHLILVNG-IAVKKRTLLQEGDEVEVQF 72 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPI 126 E+ P++IPL I+YEDE +++INKP +VVHP GN GT +NALL+Y P + Sbjct: 73 LASPESNLMPENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLPLL 132 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 D R GIVHRLDK T+GL+V AKT+ Q +L+E R++ + Y A+ IG A G + Sbjct: 133 PDTIRPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGR-PADGEIQ 191 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI RHP R MAV P GKPA++ + + + +++ + TGRTHQIRVHM + P Sbjct: 192 APIGRHPIHRKQMAVIPTGKPAISFCKTLGWSDKLSFVQIEIATGRTHQIRVHMKYRGSP 251 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 ++GDP+YG + ++ Q LHA +LR HPIS +E+ P P +MV Sbjct: 252 ILGDPLYG----------QISLNQYYSVPHQLLHAAVLRFQHPISLENLEFCTPPPPEMV 301 Query: 307 ELIE 310 LI+ Sbjct: 302 RLIK 305 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 220 bits (561), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 177/307 (57%), Gaps = 20/307 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 QRLD+ L SR+ I+ W+ + VNG+V K K G++V I + E+ Sbjct: 16 QRLDKVLTGEL-GLSRTTIQSWLKAGLISVNGEVV-KSNYKAQSGDEVTILQKEEDVITI 73 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD-----VPRA 132 +P++IPLDIV+ED+ +I++NKP +VVHP G+ GT++NALL++ ++D + R Sbjct: 74 QPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRP 133 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISR 191 G+VHR+DKDT+GL+V+AK +L E + ++ REY A+ GH G VD P+SR Sbjct: 134 GLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSR 193 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 H T R V GK A+TH+ +++ F ++ + RLETGRTHQIR HM I HP+V DP Sbjct: 194 HQTNRLKRVVEKGGKNAITHFEVLDSFSDYSLVSCRLETGRTHQIRAHMEFIKHPIVNDP 253 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 +Y PKG + Q LHA L HP++G + + P++ E I++ Sbjct: 254 LY-----HPKGKNATEFG-------QFLHARTLSFTHPLTGETLNFQVEPPKEFAEFIQL 301 Query: 312 MRADFEE 318 + FE+ Sbjct: 302 NKGHFED 308 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 220 bits (560), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 8/304 (2%) Query: 14 NQLGQ-RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE 72 N+L RLD+AL+++ SR++I++ I + +VLVN + P V + + + Sbjct: 8 NELNNIRLDKALSQLLEKISRNQIQKAIKNSQVLVNDVIISDPDVLVKENDVILFAFKEP 67 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV--- 129 EE + +I LDI+YED+D+I+INK + VHPGAG+ D T++NALL++ ++D+ Sbjct: 68 EELKIAAVNIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNLSDIGSA 127 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEP 188 R GIVHRLDKDTTGLMVVAK A L +++R++ R+Y+A+ G + G + Sbjct: 128 ARPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLAGVIKNN 187 Query: 189 ISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHT--RLRLRLETGRTHQIRVHMAHITH 245 I R +R M++ GK AVTHY+ +E F T + RL TGRTHQIRV ++H+ H Sbjct: 188 IGRSRVERQKMSILKYGGKEAVTHYKTLELFYGGTISMVECRLNTGRTHQIRVQLSHVKH 247 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 +VGD YG R +S A + L F RQALH+ L HP S ME+ +P+DM Sbjct: 248 SVVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSCELPRDM 307 Query: 306 VELI 309 +I Sbjct: 308 EAII 311 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 133/306 (43%), Positives = 178/306 (58%), Gaps = 18/306 (5%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV E RLD LA P+ SR+RI++ I + V VNG+ + +V GG+ V + Sbjct: 8 TVEEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRPA-RASHRVRGGDCVELKV 66 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPI 126 E R EP+ IPL++ +ED D++++NKPR LVVHP G+ GT++NALLH+ I Sbjct: 67 PDPETPRIEPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLSGI 126 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTV 185 + R GIVHRLD+DT+GL++VAK A L L+ R + R Y A+ G GTV Sbjct: 127 NGILRPGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTV 186 Query: 186 DEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 D PI RHP R MAV P G+ A THYR++ F + L L L+TGRTHQIRVHMAH+ Sbjct: 187 DAPIGRHPRDRQRMAVTPRSGRAARTHYRVVRRFDKFSLLELTLDTGRTHQIRVHMAHVG 246 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HPLVGD Y G RP G + Q LHA L HP +G + + AP+P + Sbjct: 247 HPLVGDLKY-GHARPELG-----------LEGQFLHAGTLGFRHPRTGEVLVFEAPLPSE 294 Query: 305 MVELIE 310 + ++E Sbjct: 295 LAAVLE 300 >UniRef50_A6GN92 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GN92_9BURK Length = 388 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/345 (40%), Positives = 190/345 (55%), Gaps = 29/345 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L A+V G RLD+ +AE+FP YSRSR++ W+ ++RVLVNG K +KV G +++ Sbjct: 18 LQASVPMELGGSRLDKVIAELFPQYSRSRLQGWLKEERVLVNGVAAAKGNQKVQGMDRIE 77 Query: 67 INAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ + + P+D+ LDIV + ++NK LVVHP G+ GT++N L H P Sbjct: 78 LSPGVLAHMQALIPEDMNLDIVARTNEYTVVNKQAGLVVHPAPGHWTGTLMNGLYHLDPE 137 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + VPRAGIVHRLD DTTGLMVVA+T Q +LV+ LQ R + R Y A+ G +++ TV Sbjct: 138 LIHVPRAGIVHRLDADTTGLMVVARTQETQVKLVQMLQARIVKRVYLAMVWGRISSPLTV 197 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVHMA 241 + P+ R P R MAV GKPAVTH+ + + T + RLETGRTHQIRVH Sbjct: 198 NNPLGRDPRNRLRMAVVDHGKPAVTHFTPVAFGELLEVPVTLMVCRLETGRTHQIRVHAQ 257 Query: 242 HITHPLVGDPVY---GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP----ISGIE 294 H LV DPVY G S + KF+RQALHAT L P + G + Sbjct: 258 HAGFALVADPVYKIKGAGSHSALRLSSIELPNGEKFERQALHATHLSFPDPAHFHVQGSD 317 Query: 295 M---------------EWHAPIPQDMVELIEVMRADFEEHKDEVD 324 E+ A P+D+ L E+ DF H D+V+ Sbjct: 318 EAAEDWDESLGNHEWPEYVAKAPEDLRLLGEMAGIDF--HSDDVE 360 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 216 bits (551), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 180/336 (53%), Gaps = 30/336 (8%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q+ T GQRLD L SRSR K I + V V G V P+ V G Sbjct: 3 QIVITSEAADAGQRLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKGLVY 62 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-- 123 A+N A E + IPL+I++ED ++I+NK + VHP G+ GT++NALLH+ Sbjct: 63 AVNMPPPVPAMPEAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQG 122 Query: 124 --PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MT 180 I V R GIVHRLDK T+G+MV AKT A T L +R +I R Y AV G Sbjct: 123 QLSGIGGVERPGIVHRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRP 182 Query: 181 AGGTVDEPISRHPTKRTHMAVH-----PMGKPAVTHYRIMEHFRVHTR---------LRL 226 GT++ I+R + R M+VH P + AVTHY+ +E F R L Sbjct: 183 LSGTIEAAIARSESDRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPAAALLEC 242 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGGRP-----RPPKGASEA----FISTLRKFDRQ 277 RLETGRTHQIRVHMAH PL+GDPVYG + + P SEA ++ R F RQ Sbjct: 243 RLETGRTHQIRVHMAHSGAPLIGDPVYGRQAGIMAWKAP--GSEARYDKALAAARAFSRQ 300 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 ALHA +L HPI+G + + AP+P+DM LI +R Sbjct: 301 ALHAAVLGFVHPITGETLRYEAPLPEDMTGLIAALR 336 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/315 (41%), Positives = 185/315 (58%), Gaps = 21/315 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L +SE +G+RLD +A++ D +R + I +LV+G KP +V GE Sbjct: 1 MNLKIEISEALMGRRLDLVVADVVHDTTRGAVVRAIEKGLILVSGNR-KKPAYRVKPGEV 59 Query: 65 V--AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V ++ +E E E++ + I LD ++ED+ I+++NKP +VVHPGAGN GT+LNALLH+ Sbjct: 60 VCGSLGSESEIESKPRAESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALLHH 119 Query: 123 YPPIADV-----PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +P + D R GIVHRLDKDT+G +VVAK+ A L + + R + + Y A+A G Sbjct: 120 FPSLTDTHCDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATG 179 Query: 178 HMT-AGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 +T G + PI RHP R MAV+ +PA T +R++ HT L + L+TGRTHQ Sbjct: 180 IITETQGRITLPIGRHPIHRKRMAVNTERARPAETLWRVLGQMAGHTLLDVGLKTGRTHQ 239 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVH + HPL GD VYG R + A RQ LHA L HP SG + Sbjct: 240 IRVHFRALGHPLAGDRVYGFRGKQSARAP-----------RQMLHAGTLGFRHPWSGKRV 288 Query: 296 EWHAPIPQDMVELIE 310 E+ AP+P+DMVE++E Sbjct: 289 EFTAPLPEDMVEVLE 303 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 179/301 (59%), Gaps = 18/301 (5%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 GQR+D+ L E ++SR++I++WI V VN +V K K + + + + EA Sbjct: 15 GQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVI-KSNYKTKMNDHIVVTEKETVEAD 73 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---RAG 133 +P+++ LDI YED+D+ I+ KP+ +VVHP AG+ GT++N L++ ++ + R G Sbjct: 74 IQPENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGINGEIRPG 133 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRH 192 IVHR+DKDT+GL++VAK A LV+ L + +TR+Y A+ G + GTVD PI R+ Sbjct: 134 IVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDAPIGRN 193 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 R M V GK AVTH+ ++EHF +T + +LETGRTHQIRVHM +I +PLVGDP Sbjct: 194 KNDRQSMDVVDDGKEAVTHFNVLEHFNKYTLIECQLETGRTHQIRVHMKYIGYPLVGDPK 253 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YG + G QALHA ++ HP++ +E +P+D +L+ + Sbjct: 254 YGPKKTLDIGG-------------QALHAGIIGFEHPVTHEYIEKSTALPEDFEQLLSEL 300 Query: 313 R 313 R Sbjct: 301 R 301 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 136/326 (41%), Positives = 178/326 (54%), Gaps = 20/326 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L V+ ++ RLD+ LA P SRSR+K ILD RV + G P GE + Sbjct: 101 LEVVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAASGETIT 160 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY--- 123 I+ + I L+IV+ED+DII+I+KPR LVVHP AG+ GT++NAL+ + Sbjct: 161 IDVPPPVAPEPAGEAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGES 220 Query: 124 -PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL----QRREITREYEAVAIGH 178 I V R GIVHRLDKDTTGLMV AK A L + E+ R Y A G Sbjct: 221 LSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGA 280 Query: 179 MT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF------RVHTRLRLRLETG 231 GT+D PI RHP R MAV G+ A+TH+ ++E F + + + +LETG Sbjct: 281 PNRIRGTIDAPIDRHPHAREKMAVRDGGREAITHWEVLETFTGRSGGEIVSLIACQLETG 340 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEA---FISTLRKFDRQALHATMLRLYH 288 RTHQIRVH+AHI HPL+GD VYG P AS+ + L RQALHA +L L H Sbjct: 341 RTHQIRVHLAHIGHPLLGDDVYG--PHFKTKASQLRPDARAALTDLGRQALHAYLLVLEH 398 Query: 289 PISGIEMEWHAPIPQDMVELIEVMRA 314 P +G + W + +P D+ L + A Sbjct: 399 PSTGEVVAWESGLPADLKRLKAALTA 424 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 118/312 (37%), Positives = 186/312 (59%), Gaps = 18/312 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 VS + G+R+D+ L+++ D SRS I++ I + +VLVNG+ K KV G+ + + Sbjct: 10 VSSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESV-KRSFKVNRGDHIRLIIP 68 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIA 127 E++ +P ++ LDI+YED+DI+++NK LVVHP GN + T++NAL+ Y I+ Sbjct: 69 PPEDSGIKPVEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTIS 128 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVD 186 V R GIVHRLDKDT+G+MV+AK + +LVE ++R+ + Y + G + G +D Sbjct: 129 GVNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKID 188 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI R P R MAV K AVT+++++E FR H+ + + L+TGRTHQIRVH +++ Sbjct: 189 APIGRDPHDRKKMAVTRKNSKKAVTYFKVLEFFRDHSYVEVELKTGRTHQIRVHFSYMGF 248 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD +YG + + RQ LHA L YHP + +E+ A +P D Sbjct: 249 PVVGDSIYGKKRNRLQAT------------RQLLHAYRLGFYHPRNDKWVEYKASLPDDF 296 Query: 306 VELIEVMRADFE 317 + ++++ F+ Sbjct: 297 KKALDILENKFK 308 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/318 (40%), Positives = 182/318 (57%), Gaps = 23/318 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD----YSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 + + VS G+RLD+ L + + SR++++ W+ D + K + V Sbjct: 5 IHVQYEVSAEDAGERLDRWLTDRLQEDDIEVSRTQVQRWLDDGFIRRARPGRLKASDPVE 64 Query: 61 GGEQVAINAEIEEEARFEPQD-IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+ ++ EE P D +P + YED+D+I+++KPR +VVHPGAG+ GT++N L Sbjct: 65 AGDLYEVDVPEEEPLELVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLVNGL 124 Query: 120 LHYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 L P+ A R G+VHR+DKDT+GL+V AK+ A LVE+ + ++ REY A+A Sbjct: 125 LARGTPLCTLAGALRPGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYVAIAH 184 Query: 177 GHMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 G M GT+D PI+R P R MAV GK AVTH+ ++E F ++ LRLRLETGRTHQ Sbjct: 185 GRMPHREGTIDMPIARDPADRQRMAVRQGGKRAVTHFEVLESFAKYSYLRLRLETGRTHQ 244 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVH+A I HP+ GDPVYG R P D QALHA L HP G + Sbjct: 245 IRVHLAAIGHPIAGDPVYGPRHTLP-------------IDGQALHARTLGFTHP-DGRRL 290 Query: 296 EWHAPIPQDMVELIEVMR 313 + + +P DM L++ +R Sbjct: 291 RFESAVPSDMARLLDGLR 308 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/302 (43%), Positives = 173/302 (57%), Gaps = 20/302 (6%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLDQ LA P+ SRSRI+ I VLVNG KPK V G+ + + E A + Sbjct: 13 RLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPA-KPKNPVSRGDSITVRIPEPEPAEAQ 71 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY---PPIADVPRAGIV 135 PQDIPLDI+YEDED+++INK +VVHP AGNPDGT++NALLH+ I V R GIV Sbjct: 72 PQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSGIGGVERPGIV 131 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHPT 194 HRLDKDT+G +V+AK A L R + Y AV G + + GTV I RHP Sbjct: 132 HRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPV 191 Query: 195 KRTHMA-VHP-MGKPAVTHYRIM--EHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 R MA V+P GK A+T Y ++ + + + L TGRTHQIRVHM ++ HPL+GD Sbjct: 192 NRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQIRVHMLYLGHPLIGD 251 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 P+Y +P + + K R LHA L HP +G M++ AP+P + ++ Sbjct: 252 PIYA---KPARQKA--------KPGRLMLHAWRLGFDHPRTGKRMDFEAPVPPEYTPWLQ 300 Query: 311 VM 312 + Sbjct: 301 LF 302 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/322 (39%), Positives = 181/322 (56%), Gaps = 22/322 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ + +E ++ + L +L E F SRS +K IL+ + +NG V P KV+ G+ Sbjct: 16 LSDSTAEGRIDRWLATSLKEQF---SRSYVKILILNGFISINGMVSKNPNRKVVPGDSFL 72 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---- 122 I ++ ++IPLDI+YED+DII+INKP LVVHP GN GT++NALL++ Sbjct: 73 ITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNN 132 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL----QRREITREYEAVAIG- 177 I V R GIVHRLDKDTTG+MVVAK A +L E + + R Y A+ G Sbjct: 133 LSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGI 192 Query: 178 HMTAGGTVDEPISRHPTKRTHMAVHPM----GKPAVTHYRIMEHFRVHTR-----LRLRL 228 + G ++ P+ R + R AV + A+THY+ +E + ++ L+ L Sbjct: 193 PLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHL 252 Query: 229 ETGRTHQIRVHMAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 ETGRTHQIRVHMAH +PL+GDP+YG G + S + RQALHA L Sbjct: 253 ETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFS 312 Query: 288 HPISGIEMEWHAPIPQDMVELI 309 HP + +M++ PIP+DM+ +I Sbjct: 313 HPRNNQDMDFQVPIPEDMLTVI 334 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 125/328 (38%), Positives = 189/328 (57%), Gaps = 19/328 (5%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV G R+D L ++P+Y+R + I + VLVNG + K ++ ++V++ Sbjct: 20 TVEARAHGWRIDHYLCRLYPNYTRVLFQTAIKQEAVLVNG-LPVKAARRMRVNDRVSVRL 78 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 + R P+DIP+DIVYED+ I IINKP D++VHPG GN GT+ AL +++ ++DV Sbjct: 79 PELPDNRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQYHFDQLSDV 138 Query: 130 P---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTV 185 R GIVHRLD++T+G+MVVAK +L ++R++ +EY A+ G M + Sbjct: 139 AGQYRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDTDYI 198 Query: 186 DEPISRHPTKRTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 D + HP R M V G + A T+Y ++E ++ T +RL+ TGRTHQ+RVHM H Sbjct: 199 DTFMCVHPRAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVRLKPRTGRTHQLRVHMQH 258 Query: 243 ITHPLVGDPVYGG----RPRPPKGASEAFISTLRK---FDRQALHATMLRLYHPISGIEM 295 I H +V D VYGG + + +EA + L +RQALHA L +HP SG M Sbjct: 259 IGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSGKPM 318 Query: 296 EWHAPIPQDMVELIEVMRADFEEHKDEV 323 ++ AP+P+DM + A ++++ EV Sbjct: 319 KFEAPLPEDMQNTL----AALDQYQKEV 342 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 180/309 (58%), Gaps = 11/309 (3%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V EN +R+DQ +A+ +P SRS++ + I + + +NG++ P KV G+Q+ Sbjct: 8 VDENFDQKRIDQVVAKQYPKISRSKVSKIIKTELLKLNGQILKDPSHKVKSGDQIEFENL 67 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YPPI 126 IEE P+ + L+I++ED+DIIII+KP +VVHPGAGN + T++N LL++ + Sbjct: 68 IEETINLIPKKMDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLLYHCKNNLSGM 127 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTV 185 R GIVHR+DKDT+GL+VVAK A + + + I R Y G + G + Sbjct: 128 NGEDRPGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLHGKI 187 Query: 186 DEPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVH-----TRLRLRLETGRTHQIRVH 239 + I R+ T R M+ + GK A+T+Y +E F+ + + ++ LETGRTHQIRVH Sbjct: 188 ETLIGRNKTNRQKMSADVIRGKDAITNYETLEVFKGNKIPDISLVKCILETGRTHQIRVH 247 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M+H +P++GD YG + + +G + F L+ RQALHA L HP + E+ + + Sbjct: 248 MSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEVFFAS 307 Query: 300 PIPQDMVEL 308 +P D+ +L Sbjct: 308 ELPDDLNKL 316 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 174/310 (56%), Gaps = 19/310 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V E G RLD+ L+ D SRSR ++ I ++ V ++ + K KV G+++ + Sbjct: 8 VEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRID-DLPVKNSYKVKAGDEIEVTLP 66 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL---HYYPPIA 127 EE +PQ++ L++VYED D+I+INKP+ LVVHPG GNPD T++N LL H I Sbjct: 67 EEEALEAQPQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLLWHCHDLSGIN 126 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 V R GIVHR+DKDT+GL+V K A L + L + R+Y A+ G + GT+D Sbjct: 127 GVLRPGIVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTID 186 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI R R MAV +PA+TH++++E F +T + RLETGRTHQIRVHM +I Sbjct: 187 APIGRDEKDRQKMAVTEKNSRPAITHFKVVERFDNYTLVSCRLETGRTHQIRVHMQYIGF 246 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGDP Y R P Q LHA L HP +G M + AP+P + Sbjct: 247 PIVGDPKYSLRKTLPTQG-------------QMLHAYQLSFTHPSTGERMTFEAPLPPEF 293 Query: 306 VELIEVMRAD 315 L+ +R + Sbjct: 294 EALLTQLRQE 303 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 136/311 (43%), Positives = 175/311 (56%), Gaps = 21/311 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV RLD+ LA + +SRSR++ WI V VNG K ++ V G+ +A+ Sbjct: 25 TVPAGTRADRLDKILAALLDGHSRSRLQGWIEAGWVQVNGAPA-KVRQVVGPGDVLAVWE 83 Query: 70 EIEEEA-RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 + E+ F P+ I +V E D I+++KP LV HPGAGN GT+LN LLH YP +A Sbjct: 84 QPAPESLAFTPEPIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELAR 143 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188 V RAGIVHRLDKDT+GLMVVA+ AQT LV LQ R + REY A+A G + G VD P Sbjct: 144 VARAGIVHRLDKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHGWLPVAGKVDRP 203 Query: 189 ISRHPTKRTHMAVH-PMG-KPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVHMAH 242 I R M+V P+ KPA+THY + R T + RLETGRTHQIRVH+A Sbjct: 204 IGRDARVPVRMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGRTHQIRVHLAS 263 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HPL+ D +YGGR GA+ RQ LHA L P G + A P Sbjct: 264 LGHPLLADTLYGGRLT--AGAT-----------RQMLHARALHFDDPGGGGPAAFRADPP 310 Query: 303 QDMVELIEVMR 313 DM ++ E ++ Sbjct: 311 DDMRQVQEALQ 321 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 210 bits (534), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/324 (39%), Positives = 182/324 (56%), Gaps = 24/324 (7%) Query: 13 ENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 E L QRLDQ LA+ + D SRSR++ I + + ++G+ +PK K+ + + + Sbjct: 9 EGALDQRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQIIELEMPN 68 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIA 127 +A + I LDI+YED+ +I+INKP LVVHPG GN GT++NAL+++ I Sbjct: 69 LRDAEPSAEAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNSLSGIG 128 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVAIG--HMTA 181 V R G+VHRLDK+T+G+MVVAK A L + R Y A+ G H Sbjct: 129 GVKRPGVVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNV 188 Query: 182 GGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-------TRLRLRLET 230 T+D + R P RT AV P + AVTH+ ++E + H + L RLET Sbjct: 189 -WTIDASLGRSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFASLLECRLET 247 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHP 289 GRTHQIRVHMAHI HPL+GD VYG + + + + +F+R ALHA L HP Sbjct: 248 GRTHQIRVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAASLTFEHP 307 Query: 290 ISGIEMEWHAPIPQDMVELIEVMR 313 SG + + AP+PQDM +LI+ ++ Sbjct: 308 SSGKVISFSAPLPQDMAQLIKHLK 331 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 133/323 (41%), Positives = 182/323 (56%), Gaps = 28/323 (8%) Query: 13 ENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 E+ LGQR+DQ LA+ + + SRSR++ I + + ++GK+ +PK K+ + + + Sbjct: 8 EDALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQTIELTIPT 67 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YPPIA 127 A E + IPL I++ED+ II++NKP LVVHPG GN GT++NAL+++ I Sbjct: 68 LNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGIG 127 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT----REYEAVAIGHMTAG- 182 V R GIVHRLDK+T+G++VVAK A L T R Y A+ G Sbjct: 128 GVRRPGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRNI 187 Query: 183 GTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRV-------HTRLRLRLETG 231 G + + R RT AV + + AVTH+ ++E ++ + L RLETG Sbjct: 188 GVITASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFASLLECRLETG 247 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRK----FDRQALHATMLRLY 287 RTHQIRVHMAHI HPLVGD VYG K S F ST+++ F+RQALHA L Sbjct: 248 RTHQIRVHMAHIGHPLVGDTVYG---NAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFE 304 Query: 288 HPISGIEMEWHAPIPQDMVELIE 310 HP G M + AP+PQDM ELI Sbjct: 305 HPAKGNIMSFSAPLPQDMAELIN 327 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/323 (39%), Positives = 183/323 (56%), Gaps = 26/323 (8%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M Q V L + E G+RLDQ L E +RS +++WI V + K V Sbjct: 1 MNQNVYLVSVADE---GKRLDQFLKER-TGLTRSEVQKWIKAGNVSLLPKKMIHSNYHVS 56 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G++++ E +++ Q+IPLDI+YED D+I+INK R +VVHPGAGN +GT++NALL Sbjct: 57 EGDRISFFWEEKKKQELIGQNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALL 116 Query: 121 HYYP----PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 + + D R GIVHRLDKDT+G+MV AK+ A L + + + R Y A+ Sbjct: 117 FHCGEQLRSVGDPERPGIVHRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVH 176 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 G M G + P+ R R V H G+PAVTH+ ++E+ ++ + +LETGRTH Sbjct: 177 GQMEGDTGVIRLPLGRSTKDRMKWDVLHETGRPAVTHFHVIEYLPHYSWIECKLETGRTH 236 Query: 235 QIRVHMAHITHPLVGDPVYGGRPR--PPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 QIRVHMAHI H +V DP+YG + P KG QALH+ L L HPI+G Sbjct: 237 QIRVHMAHIRHAVVNDPLYGWKKDHFPIKG--------------QALHSHTLELCHPITG 282 Query: 293 IEMEWHAPIPQDMVELIEVMRAD 315 M + AP+P+DM+ + + R + Sbjct: 283 EVMHFEAPVPEDMINCLNLARKE 305 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/313 (41%), Positives = 178/313 (56%), Gaps = 11/313 (3%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 V + G RLD+ LA P+ SR+RIK + D RV + +V G+ ++ Sbjct: 191 AVEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDV 250 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PP 125 + A+ EPQDI L +VYEDED+I+I+KP +VVHP GNPD T++NALL + Sbjct: 251 PPDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAG 310 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 I V R GIVHR+DKDT+GL+V AKT A L + R Y A+ G + G Sbjct: 311 IGGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGE 370 Query: 185 VDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQIRVHMA 241 ++ I R+P R MA V GKPA+T YR+++ F + + RL TGRTHQIRVHM Sbjct: 371 IEGNIGRNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMT 430 Query: 242 HITHPLVGDPVYGGRPRPPKGA--SEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 HPLVGDPVY GR R KG + L +F RQALHA +L HP G ++ + + Sbjct: 431 TQGHPLVGDPVY-GRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFES 489 Query: 300 PIPQDMVELIEVM 312 +P D+ L++++ Sbjct: 490 GMPLDINALMQIL 502 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 184/324 (56%), Gaps = 13/324 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + + L EN L RLD + + SR+RIK IL +++ +N ++ + P +KVL Sbjct: 1 MEKNINLIVGEDENNL--RLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVL 58 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+++ + +EA +P + L IVYED+D++IINKP +++HPGAGN D T++NAL+ Sbjct: 59 SGDEINLQIPEPKEASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALM 118 Query: 121 HY----YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 HY I D R GIVHR+DKDT+GL+V+AK L ITR Y+ + Sbjct: 119 HYNKDSLSTIGDELRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIW 178 Query: 177 GHMT-AGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFR-----VHTRLRLRLE 229 G + + G +D I+R R M V + GK A+T+Y+ +E F + + RLE Sbjct: 179 GKLRPSSGKIDTFITRSSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLE 238 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVHM H+ + ++GD Y + + K + + K DRQ LHA L HP Sbjct: 239 TGRTHQIRVHMTHMGNSIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHP 298 Query: 290 ISGIEMEWHAPIPQDMVELIEVMR 313 + EM + + +PQ++ ++ ++R Sbjct: 299 RTNEEMVFTSILPQELENILVLLR 322 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/316 (41%), Positives = 181/316 (57%), Gaps = 21/316 (6%) Query: 19 RLDQALA-EMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 RLD LA + D SR+R+K I V VNG +PK K+ G+Q+ I E+ Sbjct: 24 RLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIKPGDQLVIAMPEPEDPEP 83 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIADVPRAG 133 + +DIPL ++YED+D+I+++KP LVVHPGAGN GT++NAL+H+ I V R G Sbjct: 84 KGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSGIGGVKRPG 143 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESL----QRREITREYEAVAIGHMTA-GGTVDEP 188 IVHRLDK+T+G+MVVAK A L + + + R Y+A+ G GT+D Sbjct: 144 IVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQALVWGRPRGLRGTIDAA 203 Query: 189 ISRHP--TKRT-HMAVHPMGKPAVTHYRIMEHFR-------VHTRLRLRLETGRTHQIRV 238 + R TKRT + A+THY++ME + + + + RLETGRTHQIRV Sbjct: 204 LGRAGDRTKRTVKREDTDDAREAITHYQVMERYGEKPDATCLASLVECRLETGRTHQIRV 263 Query: 239 HMAHITHPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 HMAHI HPL+GDP YG + +A + + F RQALHA +L HP +G M + Sbjct: 264 HMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHAYLLAFEHPTTGDVMHF 323 Query: 298 HAPIPQDMVELIEVMR 313 APIP DM +I +R Sbjct: 324 AAPIPDDMETIIRALR 339 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 129/325 (39%), Positives = 175/325 (53%), Gaps = 29/325 (8%) Query: 19 RLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA 75 RLD+ALA P+ SRSR+ + I D V + G PK +V G++ + + Sbjct: 31 RLDKALARQVPEDAALSRSRLMKMIADGDVTLEGVAVTNPKARVAEGQEYLLRLAPAVDI 90 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YPPIADVPR 131 +P+DIPL +V+ED D+I+++KP +VVHP G+ GT++NALLH+ + R Sbjct: 91 DAQPEDIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHHCGDTLSGVGGAKR 150 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG--------G 183 GIVHR+DKDT+GL+VVAKT A L + +TR Y A+ G A G Sbjct: 151 PGIVHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGAPNAADPRLRGIRG 210 Query: 184 TVDEP---------ISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFR---VHTRLRLRLET 230 EP ++RH T R AV G+ AVT R++E + V + LET Sbjct: 211 VSFEPGGIVCIATNLARHKTDRQRQAVLFDSGRHAVTRVRVLESYGTPPVAALVECWLET 270 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQALHATMLRLYHP 289 GRTHQIRVHM+H H L+GD YGGR + PK EA F RQALHA L HP Sbjct: 271 GRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPRQALHAASLGFVHP 330 Query: 290 ISGIEMEWHAPIPQDMVELIEVMRA 314 +SG E+ + +P+P DM L +R Sbjct: 331 VSGEELLFTSPLPADMAALTAALRG 355 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 173/304 (56%), Gaps = 19/304 (6%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G RLD + E SRS I+ I + VLVNG K KV +Q+A+ E + Sbjct: 42 GTRLDVGVTERVGK-SRSFIQGLIEEGHVLVNG-AARKANYKVRAMDQIAVVIPPPRELK 99 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRAG 133 E ++IPL+I+YEDED++++NK + +VVHP G T++NALL++ I V R G Sbjct: 100 VEAENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSGINGVLRPG 159 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRH 192 IVHR+DKDT+GL+VVAK A L E ++ + R Y A+ G + GTV+ PI R Sbjct: 160 IVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRD 219 Query: 193 PTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 P R MAV K AVTHY ++E FR T L RLETGRTHQIRVHMA++ HP++GDP Sbjct: 220 PADRKKMAVVFQNAKEAVTHYEVLERFRDFTLLEARLETGRTHQIRVHMAYLKHPVLGDP 279 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 +YG R P Q LHA +L HP SG ME+ AP +++E Sbjct: 280 LYGPRKNP------------FGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGMFQKVLEE 327 Query: 312 MRAD 315 +R D Sbjct: 328 IRRD 331 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 176/312 (56%), Gaps = 6/312 (1%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRV-LVNGKVCDKPKEKVLGGEQVAIN 68 TVS G+RLD LA + SRSRI+ + + V G V + +V GE+ + Sbjct: 14 TVSTEASGKRLDAVLAAAC-ELSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLLT 72 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPP 125 + EP+D+PLDI++EDE +I++NKP +VVHP G+ GT+++ALLH+ P Sbjct: 73 LPPVKPLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLPG 132 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GT 184 I V R GIVHRLDKDT+G +V+AK+ RL E + R+Y A G + Sbjct: 133 INGVERPGIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVKC 192 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ PI RHP +R MAV G+ ++T + F +++RL L TGRTHQIRVHMAH Sbjct: 193 IELPIGRHPHQRQKMAVTDSGRESITDAAVEHIFGPFSQMRLTLHTGRTHQIRVHMAHEN 252 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 P++GDPVY P + E + RQALHA +L HPISG M + AP+P+D Sbjct: 253 LPVLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLPED 312 Query: 305 MVELIEVMRADF 316 + L + + + Sbjct: 313 LTILHDALTKSY 324 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/311 (38%), Positives = 185/311 (59%), Gaps = 29/311 (9%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA---- 66 V + GQRLD LA++ D SRS+IK I +++VLVN K+ V G +++ Sbjct: 6 VDKENFGQRLDVYLAKLV-DLSRSQIKNLIDNEKVLVN-------KKNVKAGYKLSEDDV 57 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 I+ E ++ + + I +++YEDE I +I+KP+DLVVH GAGN GT++N LL+ + Sbjct: 58 ISLEYPKDNKPFAEKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQ 117 Query: 126 IADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 ++D+ R GIVHRLDK+T+GLM++AK A LV+ + +I + Y A+ G G Sbjct: 118 LSDLDPLRPGIVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESG 177 Query: 184 TVDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 + EPI R+P R MA V+ K A+T Y+ ++ F+ ++ L + L TGRTHQIRVHMA+ Sbjct: 178 IIAEPIGRNPNDRKKMAVVYKNSKQAITKYKKLKEFQEYSLLNINLLTGRTHQIRVHMAY 237 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I +P++GD +YG + ++L K D+Q LH+ L HPI+ +ME+ P Sbjct: 238 IGYPVLGDIIYGRK------------NSL-KIDKQMLHSYKLIFNHPITNQKMEFTDEFP 284 Query: 303 QDMVELIEVMR 313 + I+ ++ Sbjct: 285 IRFKKFIDKIK 295 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 111/313 (35%), Positives = 180/313 (57%), Gaps = 25/313 (7%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 +R+D+ ++ FPD SR+ I++ + + ++VNG V K + G+ ++ + EE + Sbjct: 25 SKRIDRFISSRFPDLSRTYIQKLVKEGAIVVNGNVV-KSSYFIKKGDVISATVPVPEETK 83 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---RAG 133 P+DIPL+I+YED+ +++INKP D+VVHP G+P GT++NA+ Y ++ + +AG Sbjct: 84 ITPEDIPLNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTFYCQNLSQINGPLKAG 143 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISRH 192 IVHRLD+DT+G+M+V K+ + + ++R + +EY AV G + ++ PI RH Sbjct: 144 IVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSNEINMPIGRH 203 Query: 193 PTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 R MAV GK A + Y ++E FR +T +++ +TGRTHQIRVHM I HP+V D Sbjct: 204 RVDRQKMAVRRDTGKNATSVYEVIERFRGYTLVKIMPKTGRTHQIRVHMQAIGHPVVADE 263 Query: 252 VYG-----------GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 +Y G+ R P S +RQALHA + +HPI +M + Sbjct: 264 MYSKYNACFRSDLLGKERAPDEGS--------IIERQALHAHRIEFFHPILNKQMAFQVD 315 Query: 301 IPQDMVELIEVMR 313 + +D+ L+ +R Sbjct: 316 MAEDISFLVSALR 328 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 188/305 (61%), Gaps = 18/305 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MA ++ + T +Q G R+D L++ YSR+ + W++D +LVN K KV+ Sbjct: 1 MANKILIHIT---DQAG-RVDAVLSKENLSYSRTTLSNWLVDGTILVNNHKV-KRSYKVV 55 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ ++I +E + E ++IPLDI+YED+DII++NKP+ +VVHP AG+ GT++NALL Sbjct: 56 SGDTISITPPETQETKIEAENIPLDIIYEDDDIIVVNKPQGMVVHPAAGHSSGTLVNALL 115 Query: 121 HYYP--PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 H+ P I R GIVHR+D+DT+GL++VAK A L E L+ + R Y A+ G Sbjct: 116 HHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVRGE 175 Query: 179 MTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 T GT++ PI RH R AV G+ AVTH+R+++ + +T L++ LETGRTHQIR Sbjct: 176 FTEDSGTIEAPIGRHKIDRKKQAVIEGGREAVTHFRVLKRYVGYTLLKVSLETGRTHQIR 235 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM++I HP+VGDPVY G ++ T + + Q LHA L L P +G E+ + Sbjct: 236 VHMSYIGHPVVGDPVY--------GTAQKLDGT--QLNGQLLHAKTLTLEQPTTGDELSF 285 Query: 298 HAPIP 302 +P+P Sbjct: 286 DSPLP 290 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 172/312 (55%), Gaps = 19/312 (6%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA-EIEEEARF 77 R+D+ L + + +RSRI++ + VNG+ K ++ G+ V + E Sbjct: 45 RIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPV-KSNYRIKPGDVVTLELLRPRRELEI 103 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY------YPPIADVPR 131 P+DIPLDIVYED+ +++INKP LVVHPG GN GT++NAL +Y Y P+ P Sbjct: 104 IPEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDPMD--PS 161 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPIS 190 G+VHR+DKDT+GL+VVAK A++ L + + R Y A+ G GT+ I Sbjct: 162 LGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTITGNIG 221 Query: 191 RHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 R R MAV P +GKPAVTHY+++E + + RLETGRTHQIR HM HI H Sbjct: 222 RDLKDRLQMAVFPPDGDIGKPAVTHYQVLEELAYVSWIECRLETGRTHQIRAHMKHIGHT 281 Query: 247 LVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 L D YGG R + L RQALHA L HP++G+EM++ + IP Sbjct: 282 LFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFDSDIP 341 Query: 303 QDMVELIEVMRA 314 D+ L+E R Sbjct: 342 ADLTTLLERWRT 353 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/301 (38%), Positives = 181/301 (60%), Gaps = 18/301 (5%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 +R+D+ L++ P SRS+I++ I + + VN K K KV G+++ + E Sbjct: 14 SERIDKYLSKKVP-LSRSQIQDLIEKELIKVNEKPI-KNSYKVKLGDRIEVIIPPPVETE 71 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---RAG 133 +PQDIP++IVYEDED++IINKP+ +VVHP G+ + T++NALL+ ++ + R G Sbjct: 72 VKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKDLSGIGGELRPG 131 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRH 192 I+HRLDKDTTGL+++AK + +L E L+ R + R Y A+ G + ++ PI RH Sbjct: 132 IIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAPIGRH 191 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 P R MA+ P GK A+T+++++E F+ +T + LETGRTHQIRVH++H+ P+VGD V Sbjct: 192 PINRKKMAIVPYGKIAITNFKVLERFKGYTLISADLETGRTHQIRVHISHLGFPIVGDEV 251 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YG I Q LHA + HP GI ME+ +P++ +++ ++ Sbjct: 252 YGR------------IDKKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDLPEEFKKVLTLL 299 Query: 313 R 313 R Sbjct: 300 R 300 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 140/337 (41%), Positives = 176/337 (52%), Gaps = 40/337 (11%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G RLD LA SR++I+ I + RV VNG V KP V G+ + + Sbjct: 19 GGRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLRILRPPPVE 78 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP--PI-------- 126 P+ IPLDIVYED +I++NK LVVHP GN GT++NALL+Y P+ Sbjct: 79 IVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPVRFDEEDDL 138 Query: 127 -------------------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 167 + PR GIVHRLDKDTTGL+VVAK T L + R I Sbjct: 139 PEDDEIGLSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLARQFEHRTI 198 Query: 168 TREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRVHTRL 224 R Y A+ G G ++ I R P R MAV P GK AVTHY ++E + Sbjct: 199 ARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVEALPAAALV 258 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGGR-----PRPPKGASEAFISTL-RKFDRQA 278 R +LETGRTHQIRVH HI HP++GDP YGGR P P+ AF L + RQA Sbjct: 259 RFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPR--RRAFYDQLFARLTRQA 316 Query: 279 LHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 LHA L HP +G +E+ AP+P+DM +E +R D Sbjct: 317 LHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQD 353 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 177/306 (57%), Gaps = 27/306 (8%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI-EEEA 75 G R+DQ +A DYSRS ++ WI + + VNG V KP ++ E + EI EE+ Sbjct: 18 GMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVV-KPNLRL--KEDDVVEYEITEEQI 74 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG-TVLNALLHYYPPIADVP---R 131 P + LDIVYED+ I+++NKP+ L+VHP + T+++ LL + ++D+ R Sbjct: 75 SIVPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLSDLNGELR 134 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA---IGHMTAGGTVDEP 188 GIVHR+DKDTTGL+VVAKT A LVE L++R I+REY A+ H +A TVD P Sbjct: 135 PGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSA--TVDAP 192 Query: 189 ISRHPTKRTHMAVHPMG-KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 I R P R MAV K AVTH+ + E F + LR +L+TGRTHQIRVH +I HP+ Sbjct: 193 IGRDPKNRQRMAVTDQNSKQAVTHFYLAERFNDFSVLRCKLDTGRTHQIRVHAQYIKHPI 252 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 VGD Y + + + Q LHA L L HP+S M + A +PQ M + Sbjct: 253 VGDQTYSYK-------------NTWETNGQCLHAQKLTLTHPVSKEVMTFEAELPQTMKD 299 Query: 308 LIEVMR 313 +IE +R Sbjct: 300 VIEEIR 305 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 125/319 (39%), Positives = 177/319 (55%), Gaps = 11/319 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V E G+R+D+ L + + SR+ +++ I V V G K +V G V Sbjct: 1 MNYIVEEKHNGERIDKFLVGVMENVSRTDVQKLIEAGEVKVGGGKVSK-NFRVETGMAVV 59 Query: 67 INAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-- 123 + IE+E+ EP+DIPL+IVYED+DI++INKPR+LVVHPG G GT+ ALL+++ Sbjct: 60 VEKMIEKESSTLEPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHFKE 119 Query: 124 --PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MT 180 + R GIVHRLDKDT GLMVVAK A L L+ R + R Y A+ G Sbjct: 120 NLSTVNGPLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRD 179 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GT+D PI R+P R MAV GK + THY + F + T L L+LE+GRTHQIRVH Sbjct: 180 LEGTIDAPIGRNPKNRLKMAVVKGGKESRTHYVAKQFFAIATLLELQLESGRTHQIRVHS 239 Query: 241 AHITHPLVGDPVYGGR----PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 + HP+VGDP+Y GR R P L Q L A + L HP + ++ Sbjct: 240 RYTGHPVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLT 299 Query: 297 WHAPIPQDMVELIEVMRAD 315 + P+ + ++++++ + Sbjct: 300 FKVPMEEPFANVLKLLKKE 318 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/312 (40%), Positives = 178/312 (57%), Gaps = 22/312 (7%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 +VS NQ G RLDQ LA PD SR+ I + VLV+ +V K ++ GE V Sbjct: 22 SVSYNQRGTRLDQFLAFSLPDVSRALITLSNKKELVLVDDEV-KKSSYRLKEGETVTCAL 80 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI--- 126 EPQ + + +YED+ +++++KP +VVHPG GN +GT+++ LL++ I Sbjct: 81 WQAPPLSLEPQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLYHCREIGGV 140 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGTV 185 D R GIVHRLDKDT+G MVVAK + LV+S + R++ + Y A+ G G + Sbjct: 141 GDAIRPGIVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGIPKKYEGRI 200 Query: 186 DEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRV----HTRLRLRLETGRTHQIRVHM 240 PI RH R MA+ GK A T+++++E F ++ LR+ +ETGRTHQIRVHM Sbjct: 201 VAPIGRHSVHRQKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETGRTHQIRVHM 260 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + I P+ GD VYG + + P F RQ LHA+ LRL HP++G M + AP Sbjct: 261 SSIGCPIAGDQVYGSKRQNP------------AFARQMLHASRLRLPHPVTGRTMSFTAP 308 Query: 301 IPQDMVELIEVM 312 + QD E++E M Sbjct: 309 LWQDFQEVLEDM 320 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/319 (37%), Positives = 191/319 (59%), Gaps = 8/319 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT V + +RLD L+ PD SRS++++ I + RV VNG + K ++ G+ +A Sbjct: 10 LTFHVDVEEKLRRLDVFLSARSPDCSRSQVQKLIREGRVTVNG-LPVKASYEIRSGDCIA 68 Query: 67 INA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E E +P+ +PL+I++ED+D++++NK ++VHPGAG+ +GT+++ LL + Sbjct: 69 VWLPEAVGEDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSR 128 Query: 126 IAD--VPR-AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 +A PR GIVHRLD+ T+G ++VAK+ A L+ + E+ +EY A+ G M A Sbjct: 129 LASRGAPRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGA 188 Query: 182 GGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G + + RHP R MAV G+ AV+ +++ + + LR+ ++TGRTHQIRVH+ Sbjct: 189 SGEIRTGMGRHPVDRKRMAVLEKGGREAVSQWKVAVAWGEVSLLRVVIKTGRTHQIRVHL 248 Query: 241 AHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 +H+ HP+VGD YGG R + S+ L + DRQ LHA L HP+SG ++ + A Sbjct: 249 SHMQHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTA 308 Query: 300 PIPQDMVELIEVMRADFEE 318 P+P D L+E +R ++ Sbjct: 309 PLPPDFAGLLERIRISLQK 327 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 176/317 (55%), Gaps = 20/317 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCD-KPKEKVLGGEQVAIN 68 V E G RLD LA SRSR + ++D + +G+V +P K+ G+ + Sbjct: 43 AVPEEDSGARLDLFLAGEL-SLSRSRARS-LIDGGAVSSGQVKKIRPAFKIQPGQIYRVE 100 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--- 125 A QD+P D+VYED+D+I++NKP +VVHPGAG PDGT++N L+ YP Sbjct: 101 IPEAAPAEIAAQDMPFDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLMFRYPEIGR 160 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 I D R GIVHRLD T+GLMVVA++ A L E+ Q E+ +EY + +G + A GT Sbjct: 161 IGDSVRPGIVHRLDVGTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGT 220 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 VD PI R P R M V G+ AVT Y+++ +R+RL TGRTHQIRVHM + Sbjct: 221 VDAPIGRDPRNRLKMCVSWDGRDAVTDYKVLWTRARCNLIRVRLHTGRTHQIRVHMRALG 280 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 L GD +YG PK ++ + DR LH+ L HP+SG +E+ AP+P Sbjct: 281 CSLDGDTLYG-----PKDPAQHILK-----DRVFLHSWRLGFRHPVSGERLEFRAPLPP- 329 Query: 305 MVELIEVMRADFEEHKD 321 ELI +R + +D Sbjct: 330 --ELIAALRVPLSQPED 344 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 132/319 (41%), Positives = 179/319 (56%), Gaps = 27/319 (8%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +L L RLD+ L + SR+RI+++I V VNGK K K + G+QV Sbjct: 28 ELVTLTYPKPLPMRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQ-GKAKTPLREGDQV 86 Query: 66 AINAEIEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E + +PQ + LD+++EDE II++NK L VHP GN DGT++N LLH+ P Sbjct: 87 QLWMPPPEPLPYLKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCP 146 Query: 125 PIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + + R GIVHRLDKDT+G +VVAK+ A +L +Q+R +REY AV G Sbjct: 147 DLPGISGKLRPGIVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDG 206 Query: 182 -GGTVDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 GT+ + RHP R AV G+ A TH+ ++E F ++ LR +L+TGRTHQIRV Sbjct: 207 DSGTIIGAVGRHPVDRKKYAVVSDESGRYARTHWTLIERFGDYSLLRFKLDTGRTHQIRV 266 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRK----FDRQALHATMLRLYHPISGIE 294 H AHI HP+VGDP Y S RK QALHA L L HPI+G Sbjct: 267 HCAHINHPVVGDPTY---------------SRCRKLPLDLPGQALHAVQLGLDHPITGER 311 Query: 295 MEWHAPIPQDMVELIEVMR 313 M + AP+P M +L+ V+R Sbjct: 312 MVFEAPLPPVMEKLLLVLR 330 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 179/310 (57%), Gaps = 29/310 (9%) Query: 16 LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA 75 L RLD+ L P+ SR+RI+++I V VNG + K + G+++ + E Sbjct: 20 LPMRLDRWLVSQRPEQSRARIQKFIEAGYVRVNGTT-GRAKTPLRHGDEIKLWMPPPEPL 78 Query: 76 RF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---R 131 + +P+ + LD+++EDE +I+INKP L VHP GN DGT++N LLH+ P + + R Sbjct: 79 PYLQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLR 138 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG--GTVDEPI 189 GIVHRLDKDTTG +V+AK+ A +L +Q+R +REY AV G + AG GT+ I Sbjct: 139 PGIVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHG-VPAGESGTIVGAI 197 Query: 190 SRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 RHP R AV G+ A TH+ + E ++ LR +L+TGRTHQIRVH AH HP+ Sbjct: 198 GRHPVDRKKYAVVSSDNGRYACTHWSLQERLGDYSLLRFKLDTGRTHQIRVHCAHRNHPV 257 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRK----FDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 VGDP Y S RK QALHA L L HPI+G M + AP+P+ Sbjct: 258 VGDPTY---------------SRCRKLPIELPGQALHAVQLGLDHPITGERMVFEAPLPE 302 Query: 304 DMVELIEVMR 313 + +L+ V+R Sbjct: 303 VLEKLLAVLR 312 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 115/286 (40%), Positives = 167/286 (58%), Gaps = 14/286 (4%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +RLD+ LA +PD+SRS IK+ + + V VNG+ KP K+ GE+V ++ E Sbjct: 16 ERLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPEPEPLDV 75 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRAGI 134 +P++IP++I+YEDEDI ++ KP LVVHP G GT++NALL++ I V R GI Sbjct: 76 KPENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVERPGI 135 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHP 193 VHRLDK+T G+MV+AK A LV Q R+ + Y+ + G + G +D PI+RHP Sbjct: 136 VHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYGAIDTPIARHP 195 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 R V GK A+T Y +++ + + T L++++ TGRTHQIRVH A I HP++GD Sbjct: 196 VDRKRFWVRKEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLGDR 255 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 YG + + +S + + + L A L YHP G EW Sbjct: 256 TYGFK---SSSVPKELLSLMGECN--MLIAYHLGFYHPTKG---EW 293 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 190/329 (57%), Gaps = 23/329 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 AQ +Q VS + RLDQ L PD SR+R++ I D+++LV+GK KP K+ G Sbjct: 4 AQHIQ----VSADDANIRLDQYLVSHLPDVSRARVQALIDDEKILVDGK-SSKPSYKLRG 58 Query: 62 GEQVAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPD-----GTV 115 E + + E + R P+DIPLD+VYED+D+ +INKP ++VH GAG + GT+ Sbjct: 59 SEVIDVVGEYQPPPLRAIPEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTL 118 Query: 116 LNALLHYYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 +NALL+ + +++V R GIVHRLDK+T+GL+VVAK A +L E R + ++Y Sbjct: 119 VNALLYRFRALSEVGGDMRPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYV 178 Query: 173 AVAIGH-MTAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEH----FRVHTRLRL 226 A+ G GT++ PI+R ++RT M G+ A++HY + E + + + Sbjct: 179 ALVHGWPKKLKGTINLPIARDMSRRTRMTTRGSGGRDALSHYEVKEKIESPYGKFALVEV 238 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYG--GRPRPPKGASEAFISTLRKFDRQALHATML 284 ++ETGRTHQIRVHMA + HP+VGD +YG G R K A + S + +R LHA + Sbjct: 239 KIETGRTHQIRVHMASLGHPVVGDTLYGAPGELRVTK-ALKGMPSKMASLERNFLHAAEI 297 Query: 285 RLYHPISGIEMEWHAPIPQDMVELIEVMR 313 L P +G + + +P + + E +R Sbjct: 298 ELQQPATGKALRFVTKVPAALEDFAETLR 326 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 23/324 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L TV G R+D L+ ++P++SR + I + +VLVNG + K ++ + + Sbjct: 15 LVLTVEARAHGWRIDHYLSRLYPNFSRVAFQRTIEEGKVLVNG-LPVKISRRLRVNDVIE 73 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E + R +P+DIPLDI+Y+DE + +INK +++VHPG GN GT+ AL ++ + Sbjct: 74 FSLPAEPDQRVQPEDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDSL 133 Query: 127 ADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 +DV RAGIVHRLD+DT+G++VVAK L + R + +EY A+ G M Sbjct: 134 SDVAGQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDA 193 Query: 184 TVDEPISRHPTK-RTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 E R + R M V P G + A T Y + + FR T ++L+ +TGRTHQ+RVH Sbjct: 194 DYVETYVRVSFRNRERMMVCPPGDNARQAATFYEVQQRFRGFTYVKLQPQTGRTHQLRVH 253 Query: 240 MAHITHPLVGDPVYGGR---------PRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 M H+ HP++ D +Y G+ P P+ A E I DRQALHA L HP+ Sbjct: 254 MHHLGHPIIADRLYEGKTCVKLSDILPETPEEADETLI------DRQALHARRLAFNHPV 307 Query: 291 SGIEMEWHAPIPQDMVELIEVMRA 314 + M + AP+P D + ++ ++ Sbjct: 308 TKKRMVFEAPLPADFQKTLDTLKT 331 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 133/327 (40%), Positives = 173/327 (52%), Gaps = 38/327 (11%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G+RLD+ L P+ SRSR K I VL++ PK KV+ + I +A Sbjct: 31 GERLDKWLPIAAPELSRSRAKAIIEKGDVLLDDTAITSPKHKVIADGRYVILMPPPLDAE 90 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIADVPRA 132 P+DIPLD+++EDE +II+NKP LVVHP G+ GT++NALLH+ P I V R Sbjct: 91 PLPEDIPLDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGIGGVARP 150 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISR 191 GIVHRLDKDT+G+MV AKT A T L Q + R Y AV G G ++ I+R Sbjct: 151 GIVHRLDKDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRPLLGKIETRIAR 210 Query: 192 HPTKRTHMAV--------------------HPMGKPAVTHYRIMEHFR---------VHT 222 T R MAV GK A+T+Y+++E F T Sbjct: 211 STTDRKKMAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGRIDATSGLPAAT 270 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG-RPRPPKGASEAFIS---TLRKFDRQA 278 RLETGRTHQIRVHMAHI PL+GD YG R G+ AF + ++F RQA Sbjct: 271 LTECRLETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETATHACKEFKRQA 330 Query: 279 LHATMLRLYHPISGIEMEWHAPIPQDM 305 LHA +L HP++G + + P+DM Sbjct: 331 LHAAILGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 124/312 (39%), Positives = 176/312 (56%), Gaps = 20/312 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 V + G+RLD+ L++ D SRSRI +WI +RV V G +C + K KVL G++V + Sbjct: 16 VVEAGEAGKRLDKFLSDRLADLGVSRSRISQWIRQERVRVAGALCLQGKTKVLNGQKVVL 75 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 A + +P+ P+++VY D D++++NK + VHPG G GT+++ L YP +A Sbjct: 76 LAPSLQSG-IKPEVGPVEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPELA 134 Query: 128 --DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 D R G+VHRLDKDT+GL+ VA A+ L S RRE+ +EY + G A GTV Sbjct: 135 RFDGERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRPEAEGTV 194 Query: 186 DEPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTR-------LRLRLETGRTHQIR 237 D P+ R P + MAV P GK A+T ++ RV T LR+R+ TGRTHQIR Sbjct: 195 DHPLGRDPQSKIRMAVVPRGGKEALTRFK-----RVWTSPDGRVSLLRVRILTGRTHQIR 249 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHMA++ PLVGD +YG + + S ++ L K LHA L HP SG + Sbjct: 250 VHMAYLGFPLVGDALYGPQAQAAFQRSRPLLARLAKH--HMLHAWRLAFPHPRSGRMVCC 307 Query: 298 HAPIPQDMVELI 309 +P+ M L+ Sbjct: 308 EQAMPKAMWRLV 319 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 186/309 (60%), Gaps = 16/309 (5%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE----IE 72 G+RLD +++ + SR++ +E I + V VN V K K+ + + ++ E +E Sbjct: 13 GKRLDIFISDKL-NISRAKAQEAIEKKFVKVNNYVKTKS-YKIKFNDLIEVSDEFSLKLE 70 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP-- 130 + PQ+IP+ ++Y+D+ +I+++KP +VV+P AG+PDGT++NAL ++ +A+V Sbjct: 71 NSEKLIPQNIPIQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALAYHVKKLANVGAP 130 Query: 131 -RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 R GIVHRLDKDT+G+MVVA +LVE+ ++REI +EY A+ G + G + P+ Sbjct: 131 FRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQLRGSGKITTPV 190 Query: 190 SRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 R R M++ K A+T + ++++F+ +T L++++ TGRTHQIRVH + I HP++ Sbjct: 191 GRAIYDRKKMSIKSKKAKEAITEWEVIKNFKNYTFLKVKILTGRTHQIRVHFSSIGHPVI 250 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD YG + G + +S RQ LHA + L HPI+ +++ A +P D+ + Sbjct: 251 GDKTYGRKTYIEIGNKKIPVS------RQMLHAHKIELIHPITEKLLQFEASLPDDIQYI 304 Query: 309 IEVMRADFE 317 + ++ +E Sbjct: 305 LNILEDRYE 313 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/309 (39%), Positives = 171/309 (55%), Gaps = 15/309 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ V E+ G RLD L+ SRS + I + V V+ KP KV G V Sbjct: 20 LSFPVGEDGEGHRLDFVLSREI-GVSRSYASKLIKEGMVQVSWSPRVKPSLKVRVGGTVT 78 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 EE EPQD+P +VY+D+D+++++KP LVVHP G+ GT+++ LL+ YP + Sbjct: 79 AQLPPSEELELEPQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDL 138 Query: 127 AD---VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 + V R GIVHRLD T+GLMVVA+ A LV + + R + + Y A+A G + G Sbjct: 139 MELNGVKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLRGEG 198 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +V PI R P R MA P G+ A+T YR++ ++ + +++TGRTHQIRVHM + Sbjct: 199 SVSLPIGRDPDNRKRMACVPWGREALTRYRVIWSRGGYSLVACQIKTGRTHQIRVHMRSL 258 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +YGG P P E F R LH+ L HP +G M + P+P Sbjct: 259 GHPLVGDRIYGG-PCP-----EGF-----PLGRVFLHSWRLEFDHPRTGAPMSFICPLPP 307 Query: 304 DMVELIEVM 312 D+V I ++ Sbjct: 308 DLVRFIGLV 316 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/326 (38%), Positives = 183/326 (56%), Gaps = 21/326 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 V+LT T +E R+D L + SRS + WI + V ++G K ++ G+ Sbjct: 36 VRLTVTPAEAD--SRVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPL-KANYRLRPGDV 92 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + E P+DIPL+I+++D DI +INKP LVVHP G+ GT++NALL++ Sbjct: 93 IEVAPPAPEAVEILPEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIK 152 Query: 125 PIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 ++ + R GIVHR+DKDT+GL+VVAK A L E ++ + REY AV G + A Sbjct: 153 DLSGINGELRPGIVHRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGA 212 Query: 182 -GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRV 238 G V+ PI R P R MAV GK A+TH+R++ + + + L RLETGRTHQIRV Sbjct: 213 ETGRVEAPIGRDPKDRQRMAVIAGGKSAITHFRVLARYPEQGFSLLHCRLETGRTHQIRV 272 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H+AHI HP+ GDP YG P+ A+ QALHA L HP SG M + Sbjct: 273 HLAHIGHPVAGDPKYG-----PRKAAFGLTG-------QALHAWKLEFVHPRSGEPMRFQ 320 Query: 299 APIPQDMVELIEVMRADFEEHKDEVD 324 A P+ V++++ ++ +D+ + Sbjct: 321 ADPPEPFVQVLQALQMTPTNQRDQAN 346 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 128/322 (39%), Positives = 175/322 (54%), Gaps = 16/322 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +LTA + EN GQRLD+ LA +FPD SR+R++ I + R+ +G+ K G Sbjct: 26 RLTADLPENLAGQRLDKVLAPLFPDLSRARLQALIAEGRLTFDGETVADASRKARAG-VY 84 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-- 123 ++ A EP+ +PL I+YED +I+++K + VHP G +GT++NALLH+ Sbjct: 85 SLVVPPPAPADPEPEALPLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGA 144 Query: 124 --PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 + V R GIVHRLDKDT+G+MV AK+ A L +I R Y A+ G Sbjct: 145 SLSGVGGVARPGIVHRLDKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNP 204 Query: 181 AGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFR-----VHTRLRLRLETGRTH 234 GT+ I R P R MAV G+ A+THYR+ F + R+ RLETGRTH Sbjct: 205 PTGTIQTQIGRSPGDRKKMAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETGRTH 264 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHMA P +GDPVYG +P E + RQALHA +L HPI+G Sbjct: 265 QIRVHMASKGSPCLGDPVYGA-AQPAAAVRERIEAA--GLRRQALHAAVLGFVHPITGET 321 Query: 295 MEWHAPIPQDMVELIEVMRADF 316 + + P+P DM + +EV A Sbjct: 322 LRFETPLPADM-DALEVALATL 342 >UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae RepID=Q2IJ40_ANADE Length = 353 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/314 (39%), Positives = 173/314 (55%), Gaps = 24/314 (7%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G RLD AL + P+ SR+R++ + RV V+G+ K ++ GGE +A+ E + Sbjct: 34 GARLDAALVRLAPELSRARVQRLVEAGRVQVDGRAA-KASARLRGGEAIALEIPPPEPSG 92 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP------PIADVP 130 QD+PL +++ED D+I+++K +VVHP G P TV+NALLH P +P Sbjct: 93 LVAQDLPLAVLHEDADLIVLDKAPGMVVHPARGTPHSTVVNALLHRLGLPAAAGPDGALP 152 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPIS 190 R G+VHRLDKDT+G +VVAKT A L + R + + Y A+ G + A G +D P Sbjct: 153 RLGLVHRLDKDTSGCLVVAKTEAALAALQAQWKGRSVEKVYLALCHGALAAAGRLDTPYG 212 Query: 191 RHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRL-RLRLETGRTHQIRVHMAHITHPLV 248 RHP R + A+T +R+ E F L + L TGRTHQIRVH++ HPL+ Sbjct: 213 RHPRDRLRFTGRLASSRRAITEWRVREAFGPAASLAEVTLHTGRTHQIRVHLSEAGHPLL 272 Query: 249 GDPVYGGRPR--------PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 GD VYGG R P + A+EA RQALHA L L HP +G + AP Sbjct: 273 GDAVYGGTRREARLAPDDPARRAAEA-------VGRQALHALRLGLDHPRTGRRLVVEAP 325 Query: 301 IPQDMVELIEVMRA 314 +P D+ +E++RA Sbjct: 326 VPADLRAALEILRA 339 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 172/300 (57%), Gaps = 19/300 (6%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G+RLD+ +A+ D SRS I+ I V VNGK KP K+ G+ + I E Sbjct: 14 GERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTA-KPSLKLKNGDTITIEISPETPPE 72 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---RAG 133 + +DIPL+I+++D+D+++INKP L VHP G+PD T++N +L P + D R G Sbjct: 73 LKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPKMEDFDDPLRPG 132 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRH 192 IVHRLDKDT+GL++VAK L + R + + Y + G + A G ++ P+ R Sbjct: 133 IVHRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRD 192 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 P R +AV G+ A T Y+++ + + ++ L ++LETGRTHQIRVH A I HP+ GD + Sbjct: 193 PQNRQKIAVVSNGRHARTGYKVLRYIQGYSLLEVKLETGRTHQIRVHFAAIGHPVAGDAI 252 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YG + E ++ RQ LHA L P +G +E+ +P+P D+ E ++++ Sbjct: 253 YGQK--------ETWLK------RQFLHAHRLSFTLPSNGQTVEFTSPLPPDLEETLKIL 298 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 196 bits (498), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 117/314 (37%), Positives = 184/314 (58%), Gaps = 30/314 (9%) Query: 15 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKV-CDKPKEKVLGGEQVAINAEIEE 73 Q +R+D+ + + + SR+ IKE I V +N V K V G+++ I + + Sbjct: 15 QYKERIDKYIGQN-SELSRNDIKELIEQGAVYINDNVQVHKCNYIVREGQEITIVKLLNK 73 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL-HYYPPIAD---V 129 E + EP +IPLDI YED+D++IINKP +LVVHP G+ + T++N LL H+ +++ + Sbjct: 74 EIKIEPVNIPLDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGL 133 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEP 188 R GIVHR+DKDT+GL+++AK L + L+R EI R Y A+ G + T ++ P Sbjct: 134 LRPGIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLP 193 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVHMAHIT 244 I+R+ R M+VH GK A+T +++HF + + +R L+TGRTHQIRVH+++I Sbjct: 194 IARNTVDRKMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIRVHLSYIK 253 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HP+ GDP YG ++ +F+ Q LHA L+ HP++ E+ +AP+P++ Sbjct: 254 HPVYGDPTYG--------------KSVDEFN-QRLHAYKLKFIHPLTKKEICVYAPVPKE 298 Query: 305 MVELIEVMRADFEE 318 +V DF E Sbjct: 299 F----DVADYDFNE 308 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/321 (37%), Positives = 180/321 (56%), Gaps = 14/321 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 +T VS+ Q R+D+ L + + +R++++ I + RVLVNGK K +V + + Sbjct: 1 MTLDVSKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPV-KSNYRVKSCDHIH 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + P+DIP+ I+YED+D+++I+K +VVHP GN GT+ NA+LH+ Sbjct: 60 LTFLRPPAPELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKD 119 Query: 127 AD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 AD R GIVHRLDKDT+GL+++AK A +L R++ + Y+A+ G A Sbjct: 120 ADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKA 179 Query: 182 -GGTVDEPISRHPTKRTHMAVHPM----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 GT+ I R R MA P GK A+T Y+++E + + + L TGRTHQI Sbjct: 180 ESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGG-RPRP-PKGASEAFISTLRKF-DRQALHATMLRLYHPISGI 293 RVH+ H+ H ++GD YGG PR P SE F L + RQALHA LR P +G Sbjct: 240 RVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGE 299 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 + + AP+P+DM ++E +R Sbjct: 300 PLSFSAPLPEDMELVLEKIRT 320 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 182/312 (58%), Gaps = 14/312 (4%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + GQRLD + + SR+ I V V+ K KP + GE V++ Sbjct: 11 VQNKEQGQRLDAFVPVHCKNLSRNACARLIRQGLVTVD-KSVKKPSYVLKPGEMVSVTVP 69 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIA 127 E A QD+ L I+YED DI+ +NKP +VVHP G+ T++NALL + I Sbjct: 70 EPETADIVAQDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSGIG 129 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVD 186 V R GIVHRLDK+T+G+++ AK A L E L +R + + Y A+A G + G +D Sbjct: 130 GVQRPGIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGVID 189 Query: 187 EPISRHPT--KRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 P++RHP+ KR H++ G+ A++ + + E F T ++++++TGRTHQIRVH+A + Sbjct: 190 LPLARHPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIKTGRTHQIRVHLAALH 249 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKF---DRQALHATMLRLYHPISGIEMEWHAPI 301 HP++GD VYGGR + +G A S L K +RQ LHA ++ HP++G ++ AP+ Sbjct: 250 HPVIGDTVYGGRKK--RGRLPA--SVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTAPL 305 Query: 302 PQDMVELIEVMR 313 PQDM +L+E +R Sbjct: 306 PQDMAQLLEALR 317 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/312 (36%), Positives = 180/312 (57%), Gaps = 11/312 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 +L TV E+Q G RLD+ + + P SRSR+++WI +L++G VC KP K+ G+ Sbjct: 4 ELLFTVQESQAGSRLDRLVMQNIPRPAPSRSRVQDWIRKGNILLDGTVCLKPAHKLSAGQ 63 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V + A EE EP LDIVY D +++++NKP L VHP + +P T+++ LL+ Sbjct: 64 TVQVLAR-EENEDLEPVAGKLDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYAC 122 Query: 124 PPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P + D R GIVHRLDKDTTGLMV A A+ L R + + Y A+ G + Sbjct: 123 PGLRLMTDRQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALK 182 Query: 181 AG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEH--FRVHTRLRLRLETGRTHQIR 237 G ++ P++R R +A G+ A T Y++++ + + +++++ TGRTHQIR Sbjct: 183 QDEGIINVPLARDQQSRARVAPSREGRSARTAYKVLKRDPSGLWSLVQVQIFTGRTHQIR 242 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH +H+ HP++GD +YGG G + F+S L K RQ LH++ L + HP+S +E+ Sbjct: 243 VHFSHLNHPVLGDRIYGGTDWDRFGWKKRFLSRLAK--RQLLHSSCLGIMHPVSRQWLEF 300 Query: 298 HAPIPQDMVELI 309 + P+D + + Sbjct: 301 ISRPPRDFIRTL 312 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/336 (38%), Positives = 183/336 (54%), Gaps = 34/336 (10%) Query: 10 TVSENQLGQRLDQALAEMFPD---------YSRSRIKEWILDQRV-----LVNGKVCDKP 55 TV+ G RLD+ L E D SR+R+++ I +V K+ P Sbjct: 138 TVTAEDAGARLDKYLTEALGDKGEGDAPATLSRARMRQLIEQGQVSREEKAGAPKLLTDP 197 Query: 56 KEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 +V GE+++++ A+ Q IPL+IVYED D+I++ KP LVVHP GNPD T+ Sbjct: 198 SYRVKAGERLSVSVPPPTPAKPAGQAIPLEIVYEDADLIVVMKPAGLVVHPAPGNPDMTL 257 Query: 116 LNALLHYY----PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL----QRREI 167 +NAL+ + I R GIVHRLDK+T+GLMVVAKT A L + ++ Sbjct: 258 VNALVAHCGETLSGIGGEKRPGIVHRLDKETSGLMVVAKTDRAHQGLSAQFAAHGRDGKL 317 Query: 168 TREYEAVAIG-HMTAGGTVDEPISRHPTKRTHMAV------HPMGKPAVTHYRIMEHFR- 219 TR Y A+ G T GTVD I+R R+ MA G+ A+THY + + Sbjct: 318 TRAYTALTWGVPQTRKGTVDANIARSSHNRSKMATVRDRGEETGGRIAITHYTVKTDYAD 377 Query: 220 -VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG--RPRPPKGASEAFISTLRKFDR 276 + + RLETGRTHQIRVHM + HPL+GD YG + R K + EA + L + +R Sbjct: 378 GLVAEVECRLETGRTHQIRVHMTALGHPLLGDATYGTGMKSRKSKLSPEAQ-AALERLNR 436 Query: 277 QALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 QALHA L HP++G +M + AP+P+DM EL+ + Sbjct: 437 QALHAHHLGFEHPVAGEKMSFDAPLPEDMQELVRAL 472 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 164/306 (53%), Gaps = 22/306 (7%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 GQR+D+ L+ SRS ++ + + VL NGK K K+ G+ + + + Sbjct: 14 GQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAK-SLKLKAGDIILLEIPDAKPIE 72 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL-HYYPPIADVP---RA 132 PQ+IPLDI+YED ++++NKP+ +VVHP GNPDGT++NALL H ++ + R Sbjct: 73 AVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKGSLSGIGGEIRP 132 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISR 191 GIVHR+DKDT+GL+VVAK L + + + R Y + G G V+ + R Sbjct: 133 GIVHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQDEGFVESNLGR 192 Query: 192 HPTKRTHMAVHPMGKP----AVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 T R MAV+P +P A T Y+++E T L RL+TGRTHQIRVHMA I HP+ Sbjct: 193 SKTDRKKMAVYPASEPHTKYAYTGYKVLERLGEFTMLECRLKTGRTHQIRVHMASIHHPV 252 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 GDPVYG + + Q LHA L HPI+G + + + +P Sbjct: 253 AGDPVYGPH------------NCITSLHGQCLHAKTLGFIHPITGEHLRFDSELPDYFTR 300 Query: 308 LIEVMR 313 + +R Sbjct: 301 FLTTLR 306 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 172/320 (53%), Gaps = 24/320 (7%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 R LT + G RLD+ L+ + P SRS ++ I D V +G + P+ V G Sbjct: 2 NRKTLTFQIEAGDAGTRLDRCLSRLIPGESRSFLQRLIRDGLVKADGVALEVPRYPVRAG 61 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 +A+ EE + I+YED+ +++I+KP +VVHP AGNP GTV+NALL Sbjct: 62 MSIAVELPEEESPEPAAEPFEFPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGR 121 Query: 123 YPPIAD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 YP +A+ R GIVHRLDKDT+G + VAKT AQ +L + RE + Y A+ G Sbjct: 122 YPQLAEQLACTTSRPGIVHRLDKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRG 181 Query: 178 -HMTAGGTVDEPISRHPTKRTHMA-VHPMGKPAVTHYRI-----MEHFRVHTRLRLRLET 230 + G + I RHP R MA V GK A+T YR+ ++ + L +R+ T Sbjct: 182 VPIRRSGELSTLIGRHPVSRQKMAVVERNGKLAITRYRVEYTGMLDGVEIGV-LAVRILT 240 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVH+A + P++GD VYGG G +RQ LHA L + HP Sbjct: 241 GRTHQIRVHLASLGVPVLGDAVYGGARTAVAG-----------VERQLLHAWKLCVPHPA 289 Query: 291 SGIEMEWHAPIPQDMVELIE 310 +G ME+ AP P+D+ ++E Sbjct: 290 TGTPMEFTAPPPEDIRRILE 309 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 171/305 (56%), Gaps = 18/305 (5%) Query: 11 VSENQLGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 + E + G RLD+ LA+ + + SR+ + I VL+NG+ K + K G+ V + Sbjct: 14 IQEMEAGIRLDKVLADRYKSNGSRTYFQMLIEKGLVLLNGEPVKK-RFKPNVGDDVELFF 72 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-----P 124 E P+ IPL+I+YEDE ++IINKP +VVHP GN GT +NALL++ Sbjct: 73 AAAPEIDLIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYSLSD 132 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 D R GIVHRLDK+T+G++V AKT+ Q +L+E R++ +EY A+ +G+ Sbjct: 133 ASVDSIRPGIVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGN-PGNCE 191 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ PI RHP R M V GK A+T +E +L L TGRTHQIRVH+ H Sbjct: 192 LNWPIGRHPIHRKQMTVREDGKEALTFCETLEVGNEICLAKLILSTGRTHQIRVHLKHKG 251 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HP++GD +YG + ++ + +RQ LHA L HPI+ ++E AP+P D Sbjct: 252 HPILGDSIYGSKQ----------VNMRYRAERQMLHARKLAFIHPITQQKIEVEAPLPAD 301 Query: 305 MVELI 309 M E + Sbjct: 302 MEECL 306 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/338 (38%), Positives = 181/338 (53%), Gaps = 42/338 (12%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + +AT+ RLD LA + SRS++ WI V V G+ K K+ Sbjct: 1 MSSLLSFSATMG------RLDAVLAALS-GASRSQVAAWIAGGHVKVEGQPVTKVSLKLR 53 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGE++ ++ +AR E +D+PLD++YED+ +I +NKP +V HP G GT++NALL Sbjct: 54 GGERIDVSPPALPDARVEAEDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALL 113 Query: 121 HYYPPIADVP--------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 P+ + P R GIVHRLDKDT+G++VVAKTV A RL + + RE + Y Sbjct: 114 GRM-PLPEQPDYDSEAGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYL 172 Query: 173 AVAIGHMTAGGT--VDEPISRHPTKRTHMAVHPMG-KPAVTHYRIME-----HFRVHTRL 224 A+A G A G V+ PI RHP +R M V + A T + + H R + Sbjct: 173 AIAAGQWRADGPARVEAPIGRHPVQRQRMTVGGANPREAQTLFTPLAAHPDGHGRTLALV 232 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATML 284 R + TGRTHQIRVH+AH+ P++GD VYG +SE + R ALHA L Sbjct: 233 RAQPRTGRTHQIRVHLAHLGSPILGDAVYG-------RSSETML-------RHALHAHFL 278 Query: 285 RLYHPISGIEMEWHAPIPQDM----VELIEVMRADFEE 318 + HP +G + HAP P DM + L M +D EE Sbjct: 279 SVPHPGTGRLLHLHAPAPDDMLNAWIALGGAMPSDLEE 316 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/301 (39%), Positives = 164/301 (54%), Gaps = 20/301 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 T GQR+DQ L PD+SRSRI+EWI RV VNG K + + V + Sbjct: 4 TADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAV-KTSYTLRAADAVEVEP 62 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 +DIPL I+YED D++ I+KP +VVH GAG GT++NALLH + ++ V Sbjct: 63 ADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFATLSGV 122 Query: 130 P---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTV 185 R GIVHRLD+ T+G+++VAK A +L REI + Y A+ G + G + Sbjct: 123 GGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPETGRI 182 Query: 186 DEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 + PI+R P R M G+ A + YR++ F T L +R+ TGRTHQIRVH+A I Sbjct: 183 ERPIARDPVHRARMTARLAEGRAAWSEYRVLRRFPDFTLLEVRIGTGRTHQIRVHLASIR 242 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HP+VGD +YG +P G R LHA +R + P SG EM +P+P D Sbjct: 243 HPVVGDTLYGAPAQPLLG-------------RYFLHAHRIRFHLP-SGREMLIESPLPPD 288 Query: 305 M 305 + Sbjct: 289 L 289 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 185/340 (54%), Gaps = 24/340 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEK 58 M ++++ T+ E QRLD+ LAE+ YSR+ I+ I + R+LVN + K Sbjct: 8 MKDKLKVIYTLQE---MQRLDKFLAELKIQELYSRTFIEHLIEEDRILVN--LTPVKKSY 62 Query: 59 VLG-GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 +L G++V IN E PQDIPLD+VYEDE + IINK ++VHPG GNP+GT++N Sbjct: 63 LLKEGDEVIINLPEPEPMNVLPQDIPLDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVN 122 Query: 118 ALLHYY----PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 173 A+L+ + + R GIVHRLD+ T+GL+++AK +L + RREI + Y A Sbjct: 123 AILYRFGENLSSGKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFA 182 Query: 174 VAIG-HMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGR 232 + G G ++ ++R + V G+ A+THY+ ++ + + + TGR Sbjct: 183 ITTGIPEPEKGEIETYLARSNKNPRTICVTNEGRYALTHYKTIKTWHYFALVEINPATGR 242 Query: 233 THQIRVHMAHITHPLVGDPVYGGR--------PRPPKGASEAFISTLRKFDRQALHATML 284 HQIRVH AHI +P++GD +Y R K +E ++ LR RQALH+ L Sbjct: 243 MHQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLR---RQALHSWKL 299 Query: 285 RLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVD 324 +HPI+G + APIP D+ + + +F D D Sbjct: 300 EFFHPITGYPISVSAPIPDDIQYTLNWLDNNFSIDTDTSD 339 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 111/313 (35%), Positives = 175/313 (55%), Gaps = 11/313 (3%) Query: 8 TATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 T T + RLD+ + SR ++K+WI +NGK+C KP +K++G E++ Sbjct: 17 TKTAEFSDRNTRLDKFWGTALEEEGISRGKVKDWIKAGFAEINGKICKKPNQKLMGNEEL 76 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E E + P+++PL+I+Y D I +INKP L HP P GT+++ ++H++P Sbjct: 77 TLKGEAELTS-LVPEELPLEIIYNDGKIAVINKPAGLTTHPAPSCPTGTLVHRMIHHFPE 135 Query: 126 IADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAG 182 I D+ R GIVHRLDK T+GL+ VA + + + RE+ + Y A+ G Sbjct: 136 IRDMDEWRPGIVHRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREF 195 Query: 183 GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIM--EHFRVHTRLRLRLETGRTHQIRVH 239 G +D+P+ RHP +T MAV G+ A + Y ++ + + +++++ TGRTHQIRVH Sbjct: 196 GEIDQPMGRHPVHKTKMAVVLKGGRDARSEYEVLWSDPAGRASLVKVKIYTGRTHQIRVH 255 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 MAHI HPLVGD VYG P + ++ L +RQ LHA L HP S E+ + Sbjct: 256 MAHIGHPLVGDQVYGSMPHAIWEQDQPQLAKLA--ERQMLHAYSLSFTHPDSEEELSFTQ 313 Query: 300 PIPQDMVELIEVM 312 P+D + +++ + Sbjct: 314 APPEDFINMLKAL 326 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 124/318 (38%), Positives = 177/318 (55%), Gaps = 15/318 (4%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V NQ R+D+ LA+ SR+RI++ + VNGK K KV + V + + Sbjct: 58 VDANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPV-KSNYKVRPNDLVTLMLD 116 Query: 71 I-EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL---LHYYPPI 126 E +P++I +++VYED+ ++++NK +VVHPGAGN GT++ A+ L P Sbjct: 117 RPRHETSIKPEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDMPEF 176 Query: 127 -ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GT 184 A+ P G+VHR+DKDT+GL+VVAKT A+ L + + R Y A+ G++ G Sbjct: 177 DANDPEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVEDEGR 236 Query: 185 VDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 ++ I R P R M V +GK AVTHY+++E F T ++ LETGRTHQIR HM Sbjct: 237 IEGNIGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVLETGRTHQIRAHM 296 Query: 241 AHITHPLVGDPVYGGRP--RPPKGAS-EAFISTLRKFD-RQALHATMLRLYHPISGIEME 296 HI HPL D YGG R + +S +AFI K RQALHA L HP + +M+ Sbjct: 297 KHIGHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQQMD 356 Query: 297 WHAPIPQDMVELIEVMRA 314 + + P D +LIE R Sbjct: 357 FDSEWPNDFRQLIEKWRG 374 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 116/318 (36%), Positives = 175/318 (55%), Gaps = 16/318 (5%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + L VS G+R D+ +A SR +I+ I D ++L++ VC PK K+ Sbjct: 38 KTLLDCMVSPQAAGERADRFIAAALAGDAISRGKIQRAISDGQLLIDNTVCTSPKTKLKS 97 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ + + E A P++ L+++Y D +++INKP L VHP P+GT+++ LLH Sbjct: 98 GQHIVFSME-APAACVSPEEGELEVLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRLLH 156 Query: 122 YYPPI--ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 ++P + + R GIVHR+DKDT+GL+++A T A+ L ++ R I +EY A+ G Sbjct: 157 HFPELEAQEGFRPGIVHRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGIP 216 Query: 180 TA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIM------EHFRVHTRLRLRLETGR 232 G +D P+ RHPT +T MAV G+ A++ +R++ T + +R+ TGR Sbjct: 217 EGDSGEIDAPVGRHPTHKTRMAVVRGGREALSTWRVLLADPHGGGGTGWTLVAVRIHTGR 276 Query: 233 THQIRVHMAHITHPLVGDPVYGGRP-RPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 THQIRVHM H HPL GD +YGG P R + A T RQ LHA + HP++ Sbjct: 277 THQIRVHMQHTGHPLWGDALYGGMPGREELQTTPALAQTA---TRQMLHAWKISFDHPVT 333 Query: 292 GIEMEWHAPIPQDMVELI 309 G M++ P P D LI Sbjct: 334 GAPMQFTLPPPADFGTLI 351 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 126/320 (39%), Positives = 180/320 (56%), Gaps = 20/320 (6%) Query: 11 VSENQLGQRLDQALAEMFPDY-SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 V+ + G RLD+ + E P++ SR+ I+ I + VLVNG KP KV G+ + +NA Sbjct: 5 VTSRENGWRLDKFVMEKTPEWISRTFIQRAIKNGEVLVNG-TSKKPSYKVKSGDIITLNA 63 Query: 70 -EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--- 125 E E P+DIPLDI+YED DI++INK ++ HP + GT++N +L++ Sbjct: 64 PEAPEIPEILPEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCKDLQG 123 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGT 184 I V R GIVHRLDKDT+G+MV+AK A L + + R + Y + G G Sbjct: 124 IGGVLRPGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGD 183 Query: 185 VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRL-ETGRTHQIRVHMA 241 ++ I+R+P R M V GKPA+THY+++ F L +TGRTHQIRVHM Sbjct: 184 IEINIARNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRTHQIRVHMK 243 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 +I HPL+GD VYG A E I ++ RQ LHA L YHP +G ++++ A I Sbjct: 244 YIGHPLMGDEVYG-------RAKEDEIFGIK---RQMLHALSLSFYHPRTGEKVKFIAKI 293 Query: 302 PQDMVELIEVMRADFEEHKD 321 PQD E I+ + ++K+ Sbjct: 294 PQDFKEAIQKLDDFIRKNKN 313 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 127/328 (38%), Positives = 172/328 (52%), Gaps = 30/328 (9%) Query: 7 LTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 L+ T+ E+ +RLD+ALA P+ SRSR+ + I + V + G PK +VL G+ Sbjct: 11 LSITIGEDPP-ERLDKALAREAPEEAALSRSRLMKLIAEGAVRLKGVPVTDPKARVLEGQ 69 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 I E P+ IPL +V+ED D+I+I+KP +VVHP G GT++NALLH+ Sbjct: 70 VYEIVTGAAAEVEALPEAIPLSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHC 129 Query: 124 ----PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-- 177 I R GIVHR+DKDT+GL+VVAKT A L + + R Y A+ G Sbjct: 130 GASLSGIGGEKRPGIVHRIDKDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVP 189 Query: 178 -------------HMTAGGT--VDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFR-- 219 GG + I+RH T R AV G+ AVT R++E F Sbjct: 190 EPSDPRLRGIRGVSFEPGGVLRIATGIARHRTDRQRQAVTFEGGRHAVTRARLLERFGTP 249 Query: 220 -VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQ 277 + RLETGRTHQIRVHM+H+ H L+GD YGGR + K F RQ Sbjct: 250 PAAALVECRLETGRTHQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQ 309 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDM 305 ALHA L HP++G ++ + +P+P DM Sbjct: 310 ALHAATLGFCHPVTGEDLSFESPLPADM 337 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 21/307 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV--AIN 68 +S ++ QRLD L+ + ++S+ ++ IL Q+VLVN K K +L + + I Sbjct: 9 ISASEAFQRLDHFLSAHI-NLNKSQCQKLILAQQVLVNTK--SSKKSYLLKPQDLITVII 65 Query: 69 AEIEEEARFE-PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + E + PQ++ LDI+YED + +INKP +LVVHP T++N LLH + ++ Sbjct: 66 PQTHESINLQTPQNLNLDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNGLLHQFNTLS 125 Query: 128 --DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 D R GIVHRLDK+TTGL++VAKT +L + Q+R+IT+ Y A+ G + G + Sbjct: 126 HIDTQRPGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEGFLEDKGII 185 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI R+ R M V P GK AVTH++ ++ F + + LETGRTHQ+R H + + H Sbjct: 186 KLPIGRNNHNRLKMQVMPDGKTAVTHFKTLQRFSHFSLMECNLETGRTHQLRAHFSFLKH 245 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD +Y S I+ L +F LH+ +L+ HPI+ + AP+P + Sbjct: 246 PIVGDLLYD---------SSHHITPLGQF----LHSKILKFNHPITNQNLILEAPLPTNF 292 Query: 306 VELIEVM 312 +L++ Sbjct: 293 EKLLKTF 299 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/320 (36%), Positives = 180/320 (56%), Gaps = 23/320 (7%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILD---QRVLVNGKVCDKPKEKVLGGEQVAI 67 V E QRLD+ +++ P+YSR+ +++ + D + V K+ + E V+ G+ V Sbjct: 13 VDEFNECQRLDRYISQQLPEYSRTFLQKSLKDGAFELVRSGAKINARMSENVIEGDFVHY 72 Query: 68 NA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL----LHY 122 E +E+ P+DI LDI+YED+DI+++NKP +VVHPGAGN GT++NAL L Sbjct: 73 KMPEEADESTLLPEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDLDT 132 Query: 123 YPPIAD-VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + + D R GIVHRLDK+T+G+++VAK+ +L S RR++ + Y A+ G + Sbjct: 133 FSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTIRV 192 Query: 182 G-GTVDEPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 G T+ I R + R M GK A++HY+++ T ++L+++TGRTHQIR Sbjct: 193 GRDTITSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLADNNGATLVKLKIDTGRTHQIR 252 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM+ I HP+VGD +YG R K + DR LHA R+ HP + M + Sbjct: 253 VHMSGINHPVVGDKLYGVRRLDEKESP----------DRHILHAWRTRIIHPGTQEIMTF 302 Query: 298 HAPIPQDMVELIEVMRADFE 317 AP+ D + + +F+ Sbjct: 303 TAPLHDDFKSVCDKFGIEFD 322 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 170/301 (56%), Gaps = 20/301 (6%) Query: 16 LGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 +GQRLD + RSR++ WI D R +NG+VC K +++ G+ + + E + Sbjct: 13 VGQRLDVFWQTCLEEEGVGRSRVQAWIKDGRARINGQVCSKAATRLMPGQTLTLAPEYTD 72 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP--R 131 + P D PL++ + DED++++NK + VHP + T+++ + H++P + R Sbjct: 73 SS-VVPDDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEPTLVHRVAHHFPALLSQSGER 131 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISR 191 GIVHRLDKDT+GL+V+A + A+ L ++ RE+ +EY A+ G + GTV + R Sbjct: 132 PGIVHRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPDSSGTVSLALGR 191 Query: 192 HPTKRTHMA-VHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 HP+ +T MA V G+ A T + ++ R + +R+R+ TGRTHQIRVHMA + HPL+ Sbjct: 192 HPSIKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGRTHQIRVHMAALGHPLL 251 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD VY + T + RQ LHA LR HP S ME+ AP P D +++ Sbjct: 252 GDAVYADK------------QTAARAPRQMLHAWQLRFEHPRSFESMEFCAPPPDDFLQV 299 Query: 309 I 309 + Sbjct: 300 L 300 >UniRef50_Q1AVY4 Pseudouridine synthase n=2 Tax=Rubrobacteridae RepID=Q1AVY4_RUBXD Length = 305 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/292 (42%), Positives = 171/292 (58%), Gaps = 22/292 (7%) Query: 32 SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDE 91 SRSR + + + V G+ P +V GGE + A + EE E ++IP+ I++EDE Sbjct: 28 SRSRAQRLLAEGLARVGGEAA-APSLRVRGGE--VVEARLPEEG-LEAEEIPVPILFEDE 83 Query: 92 DIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP-RAGIVHRLDKDTTGLMVVAK 150 I +++KP +VVHPGAGN GT++NALL + P R GIVHRLD+DT+GLMVVAK Sbjct: 84 HIAVVDKPAGMVVHPGAGNRSGTLVNALLGRGIAGGEDPERPGIVHRLDRDTSGLMVVAK 143 Query: 151 TVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPTKRTHMAVHPMGKPAV 209 PA +RLVE L R + R Y A+ +G + GTVD P+ R P MA +G+PAV Sbjct: 144 GEPAYSRLVEMLAARRVRRVYRALVVGEGLPPSGTVDSPVGRDPENPALMAAG-VGRPAV 202 Query: 210 THYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFIS 269 TH+ ++ HT LR+RLETGRTHQIRVH++ I +P+ DP+Y GR P + Sbjct: 203 THFEVLGEAAGHTMLRVRLETGRTHQIRVHLSAIGYPVYADPLY-GRAVPGR-------- 253 Query: 270 TLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKD 321 R LHA L HP G +++ +P+P+++ + A FEE D Sbjct: 254 ------RLWLHAERLSFEHPAEGRPLDFFSPVPEELRRAAAELDARFEELLD 299 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 21/328 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V + Q R+D+ L + + SR++I++ ++LVN + K K+ + V Sbjct: 5 KFKFFVEKYQKTIRIDKFLRKSIQNISRNQIQKATNSGKILVNQCII-KKNYKIKPFDLV 63 Query: 66 AINAEI-------EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 AEI E ++IPL+I+YEDEDI++INK +VVHPG GN GT+++ Sbjct: 64 E--AEIYYPPILDSEYKNIIAENIPLNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHG 121 Query: 119 LLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + +++ + R G+VHR+DKDTTGL+V+AK AQ L + + I R+Y A+ G+ Sbjct: 122 IKYHFKNNHQLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGN 181 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHPMG----KPAVTHYRIMEHFRVHTRLRLRLETGRT 233 + GT+ I R P R M + + +VTHY+++E F+ T + LETG+T Sbjct: 182 IQKQEGTISGFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFKYLTYVSCNLETGKT 241 Query: 234 HQIRVHMAHITHPLVGDPVYGG-----RPRPPKGASEAFISTLRKFDRQALHATMLRLYH 288 HQIRVH ++ HPL D YGG + K + + F +L RQALHA L H Sbjct: 242 HQIRVHFKYLGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIH 301 Query: 289 PISGIEMEWHAPIPQDMVELIEVMRADF 316 P + + IP+D ++++ +R + Sbjct: 302 P-KNRKCHFTCSIPEDFKKVLQKLRNQY 328 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 20/303 (6%) Query: 18 QRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA-EIEEEA 75 +RLD +A+ P + SR+ I+ I ++ VNG KP KV G+++ I+ E+ EE Sbjct: 15 KRLDIYIAQKMPIEISRNLIQNAITKGQITVNGS-QKKPHYKVKQGDEIQIDFHELVEET 73 Query: 76 RFE---PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI----AD 128 + E P++IPL+I+YEDE++I+INKP L+VHP GT++NAL+H+ + D Sbjct: 74 KEENILPENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNALMHHVKDLDKTMQD 133 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDE 187 R GIVHRLDK+T+G++VVAK + L + + R+ + Y A+ G + G ++ Sbjct: 134 PNRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAIVEGTLKEKEGEINL 193 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHMAHITHP 246 P+ RHP R AV GK A+T Y+ ++ F + T + +RL TGRTHQIRVH +I +P Sbjct: 194 PLGRHPILRHKRAVVYNGKEAITEYKTLKEFGDLATLVWIRLRTGRTHQIRVHFKYIGNP 253 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+GD +YG K E + RQ LHA L YHP + ME+ AP+P D Sbjct: 254 LIGDSLYG------KNKIEKNLQI--PVGRQMLHALKLGFYHPKTKEWMEFLAPLPDDFK 305 Query: 307 ELI 309 L+ Sbjct: 306 NLL 308 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 173/311 (55%), Gaps = 9/311 (2%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 S G RLD +A + D SR I + +LV+G+ KP KV + + Sbjct: 11 TSAGHDGLRLDTLVAGQW-DCSRHSAALLIKNGTILVDGRP-QKPSYKVGVNQSITGRIP 68 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 ++ + P+ PL +++ED ++++NKP LVVHP G+ GT++N LLH++P I V Sbjct: 69 SQKPEKPGPEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLHHFPAIGTVG 128 Query: 131 ---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVD 186 R GIVHRLD++T+G +VVAKT A L + + R++ + Y A+ G M + GG V Sbjct: 129 EPDRPGIVHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTGGVVT 188 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI RH +R M+V P +PA T +++ + F + L L + TGRTHQIRVH + Sbjct: 189 LPIGRHSLERKKMSVSSPQARPAETRWKVRKAFVDASLLELEIHTGRTHQIRVHCTALQR 248 Query: 246 PLVGDPVYGGRPRPPKG--ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P+VGDP Y + + +S A L RQ LHA L HP++G M + AP+ + Sbjct: 249 PVVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTAPLFE 308 Query: 304 DMVELIEVMRA 314 D+ E++ ++RA Sbjct: 309 DIKEMLHLLRA 319 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 117/314 (37%), Positives = 173/314 (55%), Gaps = 23/314 (7%) Query: 17 GQRLDQALA-EMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA 75 G RLDQ + + D+SRS ++ I VL+NG+ KP KV +++ + Sbjct: 41 GMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVLKPSYKVRKNDRLHVTMPEPTHE 100 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIADVPR 131 P+DIPLDI+Y+DE + ++NKP D+VVHP GN GT++NAL ++ A R Sbjct: 101 IPVPEDIPLDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFREHLSTGAGHLR 160 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPIS 190 AGIVHRLDKDT+G+++VAK L + R++ +EY A+A G + ++ + Sbjct: 161 AGIVHRLDKDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELERDSDYIEGALK 220 Query: 191 RHPTKRTHMAVH--PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 HP R M V P K A+++Y ++E FR T ++++ TGRTHQIRVH+ H+ ++ Sbjct: 221 MHPYDRLKMIVSTDPDAKHALSYYEVLERFRGFTLVKVQPRTGRTHQIRVHLLHVGCAVL 280 Query: 249 GDPVYGGR---------PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 D +YGGR P P E + RQALHA LR HP +G +E A Sbjct: 281 ADKIYGGRAQVKLSEIAPGTPPAEDEVLLG------RQALHAFRLRFQHPRTGQWIEAEA 334 Query: 300 PIPQDMVELIEVMR 313 P+P DM ++ +R Sbjct: 335 PLPPDMRRTLDALR 348 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 29/310 (9%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +RLD L++ ++RSR++ + ++ V +N + KV GG+++ + Sbjct: 30 KRLDIYLSKNCLGFTRSRVQRLLEEKLVTIN-DIYPASSHKVRGGDRIRVLIPPPRSQTA 88 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP------- 130 +P++I L+I+YEDED+I+I+KP LVVHP G+ GT++N LL ++ D Sbjct: 89 QPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEE 148 Query: 131 --------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 RAG+VHRLD+DT+G+MVV KT L+ + R ++++Y A+ G + Sbjct: 149 EEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKK 208 Query: 183 -GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHM 240 G ++ PI R R V GKP+VT YR++E + ++ L + L TGRTHQIRVH Sbjct: 209 RGEINAPIGRSTHDRKKFTVRQDGKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVHF 268 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 ++ PL+GD VYG KG + F RQ LHA L HP S +ME+ AP Sbjct: 269 RYLGFPLLGDAVYGS-----KGTEN------KNFPRQMLHAWKLSFQHPSSNSKMEFEAP 317 Query: 301 IPQDMVELIE 310 +P D V +E Sbjct: 318 LPPDFVSALE 327 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 177/333 (53%), Gaps = 37/333 (11%) Query: 19 RLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 RLDQ L + SR R+K+ I+ ++ KVC P ++ G + I E + Sbjct: 17 RLDQFLYNNLCTHGVSRERLKKVIVSGGCKIDDKVCFSPSTRLKVGMHIFIQLP-EVVSA 75 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP--RAGI 134 P++ L+I++ DE + IINKP L VHP + T+++ LL Y+P + + R GI Sbjct: 76 LLPEEGFLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIEQGGLRPGI 135 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPT 194 VHR+DKDT+GL+ +A T + +L + R+I +EY A+ G + G + P+ R P Sbjct: 136 VHRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPSMEGYIAVPLGRDPK 195 Query: 195 KRTHMAVHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 + +AV+P GKPA T +R++ + V++ L L ++TGRTHQIRVHM HI HPLVGD + Sbjct: 196 TKVKVAVNPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMKHIGHPLVGDKL 255 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 Y G ++ + +RQ LHA L HPI+G +M + P P+D ++ + ++ Sbjct: 256 YAG----------GHVNKTFQCNRQMLHAWKLSFEHPITGKKMNFLCPPPKDFLDTVSLL 305 Query: 313 RAD--------------------FEEHKDEVDW 325 + FE+H D + W Sbjct: 306 EQEPIRIVITGVAGSGKTTVLKYFEQHSDIIIW 338 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 174/317 (54%), Gaps = 18/317 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCD-KPKEKVLGGEQVAINA 69 V E + RLDQ LA YSR +++ I VL+NG K +V G++V+I Sbjct: 41 VEEREADGRLDQFLALRLHRYSRMQLRRVIDAGGVLLNGSRAKVKVAYRVSTGDRVSIVL 100 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 A P+ IPLDI++EDE +I +NKP +VVHP G+ GT+ +AL ++ ++ V Sbjct: 101 PEMPSAGPNPEKIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQLSTV 160 Query: 130 P---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG---- 182 R GIVHRLD+DT+G+++VAKT P L R +EY A+ TAG Sbjct: 161 GGQHRPGIVHRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAI-----TAGVPDR 215 Query: 183 --GTVDEPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 V +PI HP R MA+ H + A T + ++E F H + +TGRTHQIR Sbjct: 216 DRDVVSQPIGIHPFHREKMAIRPGHSTSRDAETMFHVLERFAQHAAVECLPKTGRTHQIR 275 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH+AH+ P++ D +YGGR +G ST +RQALHA L + HP +G + Sbjct: 276 VHLAHVRTPVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTI 335 Query: 298 HAPIPQDMVELIEVMRA 314 AP+P D+ +++++R+ Sbjct: 336 EAPLPADLQRVLDLLRS 352 >UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Tax=Magnoliophyta RepID=PUS2_ARATH Length = 430 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 171/344 (49%), Gaps = 49/344 (14%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD ++ SR+R++ I V VNG+V DK V G++V + + E Sbjct: 83 RLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDEVNCTISELQPLKAE 142 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-PIADVP------- 130 +DIPLDIVYED+ ++++NKP +VVHP GNP GT++N +LH+ P D Sbjct: 143 AEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDD 202 Query: 131 -----------------------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 167 R GIVHRLDK TTGL+VVAK + L E + I Sbjct: 203 SDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTI 262 Query: 168 TREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMG------KPAVTHYRIMEHFRV 220 R Y ++ G + G ++ PI R + R MA P G + A + Y+++E F Sbjct: 263 ERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAG 322 Query: 221 --HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFIS 269 + RLETGRTHQIR H ++ PL+GD VYGG + R + E I Sbjct: 323 GGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIE 382 Query: 270 TLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 + + DR LHA +L HP +G +++ P P D+ E++ ++R Sbjct: 383 LISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLR 426 >UniRef50_Q4A7R4 Pseudouridine synthase n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7R4_MYCH7 Length = 304 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 179/300 (59%), Gaps = 34/300 (11%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE-EARF 77 R+D +A++ + SR ++ IL+++VL+N + K + V G+++ I + + + + Sbjct: 17 RIDILVAKL-ANLSRKVAQDLILEKKVLINNNLVLKKNQIVKTGQKIKIFNDYKRPKPQL 75 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI--ADVPRAGIV 135 EP +I +I+++D+++I+INKP++LVVHPG GN T++N L+ ++ + D R GIV Sbjct: 76 EPAEIDFEIIFQDQNMILINKPKNLVVHPGVGNWKNTLVNGLISHFDSLEQLDHIRPGIV 135 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISR--- 191 HRLDKDTTGL++VAK A + V L R+I R Y+A+ IG + ++ PI R Sbjct: 136 HRLDKDTTGLLLVAKNAKAHSFFVNELANRQIKRFYKAIVIGKVLHKFMKINLPIGRDLK 195 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTR----LRLRLETGRTHQIRVHMAHITHPL 247 +P K+T + KPA+T+ +++HF + ++ +LETGRTHQIR+H+AHI +P+ Sbjct: 196 NPLKKTISFFN--SKPAITNVELIKHFNYQNQDFSLVKCQLETGRTHQIRLHLAHIGYPI 253 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDR--QALHATMLRLYHPISGIEMEWHAPIPQDM 305 GDP+YG +K D Q LHA L ++ ++G+ E+ A +P++ Sbjct: 254 YGDPIYG-----------------KKIDELGQRLHAYKL-VFKDLNGLSREFQADLPEEF 295 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/317 (39%), Positives = 166/317 (52%), Gaps = 34/317 (10%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L AT+ RLD LA++ SRS+ WI +V V G V K K+ GGE + Sbjct: 21 LPATLDLTATPGRLDSVLADLT-GVSRSQAAGWIAGGQVEVGGVVVQKASLKLKGGETLR 79 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-- 124 + +A P+ +PLD++YEDE +I +NKP +V HP G GT++NALL Sbjct: 80 VQVPPPPDATVSPEAVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLP 139 Query: 125 --PIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 P A P R GIVHRLDKDT+G++VVAKTV A RL + + R + Y A+A G Sbjct: 140 EQPGAVGPDGYRPGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMW 199 Query: 180 TAGG--TVDEPISRHPTKRTHMAVHPMG--------KPAVTHYRIMEHFRVHTRLRLRLE 229 A G +V+ P+ RHPT R M V +G P TH H R +R + Sbjct: 200 KAQGPVSVNAPVGRHPTARQRMTVGGVGPREAQTLFTPLATHPD--GHGRTLALVRAQPH 257 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH+AH+ P++GD VYG R ALHA L L HP Sbjct: 258 TGRTHQIRVHLAHLGSPILGDAVYG--------------RASAVMPRHALHAQFLTLPHP 303 Query: 290 ISGIEMEWHAPIPQDMV 306 ++G + HAP+P D++ Sbjct: 304 VTGETLHLHAPVPDDLL 320 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 111/310 (35%), Positives = 170/310 (54%), Gaps = 29/310 (9%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +RLD L+ ++RSR++ + ++ V +N + K+ GG+++ + Sbjct: 30 KRLDIYLSRNCLGFTRSRVQRLLEEKLVTIN-DIYPASSHKIRGGDRIRVLIPPPRSQAA 88 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP------- 130 +P+DI L+I+YED+D+I+I+KP LVVHP G+ GT++N LL ++ D Sbjct: 89 QPEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQKKGEPEE 148 Query: 131 --------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 RAG+VHRLD+DT+G+MVV K+ L+ + R ++++Y A+ G + Sbjct: 149 EEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALVKGILPKK 208 Query: 183 -GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHM 240 G ++ PI R R AV GKP++T YR++E + ++ L + L TGRTHQIRVH Sbjct: 209 RGEINAPIGRSTHDRKKFAVRQDGKPSLTRYRVLETYHENYSLLEVTLLTGRTHQIRVHF 268 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 H+ PL+GD VYG KG R F RQ LHA L HP S +ME+ AP Sbjct: 269 RHLGFPLLGDAVYGS-----KGMEN------RNFPRQMLHAWKLAFQHPRSAAKMEFEAP 317 Query: 301 IPQDMVELIE 310 +P D V ++ Sbjct: 318 LPPDFVSAMK 327 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 168/306 (54%), Gaps = 21/306 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV---AI 67 +S +G+RLD LA SRS+++ I +LVN KP K+ G+++ I Sbjct: 16 ISPEDVGERLDTLLAHKLESVSRSQVQRAIEQGTILVNDH-PSKPSYKLREGDRILILTI 74 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + E P + L +VYED+ II+I+KP +VVHP G+ D T++NAL+ YP + Sbjct: 75 PRVPQGEVALIPSYVDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIARYPDLL 134 Query: 128 DVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 P R GIVHRLDKDT+GL++VA+ + L ++ R+I +EY + G + G Sbjct: 135 KQPTDRPGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPEGR 194 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ PI R RT M+V GK AVT Y ++ +T R TGRTHQIRVH A I Sbjct: 195 IEAPIGRDLRDRTKMSVIAGGKEAVTEYSTIQSLGKYTLAIARPITGRTHQIRVHFAAIG 254 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HP+ GDP+YG L +RQ LHA+ L + P +G EWH+P+P+D Sbjct: 255 HPIAGDPIYGN-------------CRLEGLNRQFLHASRLGVVMP-NGEYKEWHSPLPED 300 Query: 305 MVELIE 310 + + +E Sbjct: 301 LRQSLE 306 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/319 (36%), Positives = 182/319 (57%), Gaps = 23/319 (7%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRV-LVNGKVCDKPKEKVL 60 A + + T E +GQRLD L+ + + SR++IK+ IL + L NG V + P ++ Sbjct: 8 ADSLSIPKTEMEKGVGQRLDLFLSSLL-NVSRNKIKKKILSGDLRLKNGAVLE-PSHRIR 65 Query: 61 GGEQVAINAEIEEEARFEP--QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 G E++ I + EE P ++I L+I+YEDE+I+I+NK R +VVHP G+ GT++N+ Sbjct: 66 GIEEIEIRGGLTEEIPSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNS 125 Query: 119 LLHYYP---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 LL +Y P + + R GIVHRLDKDT+G+MV+AKT + L+ +R + + Y + Sbjct: 126 LLFHYGESLPGSSLLRPGIVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLC 185 Query: 176 IGHM-TAGGTVDEPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 + + I RH + R MAVH + GK A T + ++ + L+ +GRT Sbjct: 186 KNRFPYLRYSFEANIHRHASDRKKMAVHRLKGKTAETRFTLLFASSQASFLKCEPVSGRT 245 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH++H+ P++GDP+YG KG + L LHA L++ HP SG Sbjct: 246 HQIRVHLSHLGFPIIGDPLYG------KGVRKYPFPLL-------LHAYALKIEHPRSGK 292 Query: 294 EMEWHAPIPQDMVELIEVM 312 ++E+ AP+PQD E ++ Sbjct: 293 KIEFMAPLPQDFKEALDFF 311 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 170/306 (55%), Gaps = 18/306 (5%) Query: 8 TATVSENQLG----QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 +A+VSE +G RLD +A+ SR++ I + VLVNG +K K G+ Sbjct: 5 SASVSEFTVGYTAGGRLDLLVAD-HASVSRTQAATLIANGNVLVNG-AREKASYKGETGD 62 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V + + IPLD+VYEDE +++++K +VVHP GN GT++NALL Sbjct: 63 VVRVTIPPPPGRDIVAEQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRG 122 Query: 124 PPIADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P+A+ RAG+VHRLDKDT+GL+VVAK+ A L +L R++TR Y AV GH+ Sbjct: 123 EPLAEGGGEDRAGLVHRLDKDTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLA 182 Query: 181 AGG-TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 TV++PI+R P RT MA+ GK + T + + F LR L TGRTHQIRVH Sbjct: 183 EERITVEKPIARDPRDRTRMAIVQSGKASRTDFTRLARFDSVDLLRAHLHTGRTHQIRVH 242 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 +A HP+VGD Y G A + R F LHA LR HPISG ++ + Sbjct: 243 LASTGHPVVGDDTY----GGGGGRRLALLPPRRHF----LHAAWLRFRHPISGDLIDLRS 294 Query: 300 PIPQDM 305 P+P D+ Sbjct: 295 PLPADL 300 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 21/316 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLV---NGKVC--DKPKEKVLGGEQVAINAEIE 72 +R+D LA + P+ SRS + ++RV + NG C D+ KV G+Q+ I+ E Sbjct: 1 KRIDAVLAALEPEMSRSFCGNLVANKRVSIIQENGDNCLVDRKSFKVEPGQQLIISLPRE 60 Query: 73 EEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP- 130 E A QD+PLDI++EDE +I+INK ++VVHP AGN DGTV+NAL +Y ++ Sbjct: 61 EGASEIIAQDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESIS 120 Query: 131 -RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 R GIVHRLDK TTG++VVAKT L R++ + Y A+ +G+ +D+PI Sbjct: 121 FRPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKHVVIDKPI 180 Query: 190 SRHPTKRTHMAVHP-------MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 RHP R M V P G+ A+++ + + +++R+ETGRTHQIRVH+ Sbjct: 181 GRHPLHRQRMRVVPDPHQKNSTGRRALSYVDTLAFDGKLSLVQVRIETGRTHQIRVHLQD 240 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 P+ GD +YG K +S + R LHA L + HP++G M + A + Sbjct: 241 RHTPIYGDDIYGLADWNKK------LSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLA 294 Query: 303 QDMVELIEVMRADFEE 318 DM + + D E+ Sbjct: 295 DDMKRITTTIYPDSEK 310 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 163/285 (57%), Gaps = 10/285 (3%) Query: 34 SRIKEWILDQRVLVNGK--VCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDE 91 SRIK + ++ V++NG+ P V G+ V+++ E E P+ IP DIVYEDE Sbjct: 38 SRIK--LTERGVMLNGERVYISVP---VKAGDTVSVSLEKETSTDILPEPIPFDIVYEDE 92 Query: 92 DIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKT 151 ++I+NK L+VHP G+ GT+ N +++Y+ + R VHRLD++T+GL+ +AK Sbjct: 93 ALLIVNKAAGLIVHPTHGHYTGTLANGVVYYWQEKGEKFRFRPVHRLDQETSGLIAIAKN 152 Query: 152 VPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVT 210 + E L E+T++Y A+ G GT+D PI R P + V P G P++T Sbjct: 153 AYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGTIDGPIDRDPAEPHRRIVTPSGYPSLT 212 Query: 211 HYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG--GRPRPPKGASEAFI 268 +Y++ E + R+ LRL TGRTHQIRVHM I HPL+GD YG G P A E Sbjct: 213 YYKVAEAYGDGARVELRLGTGRTHQIRVHMTSIGHPLIGDKFYGMPGLAELPAPARERIA 272 Query: 269 STLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 RQALHA+ L HP++G + + + +P+DM++L ++R Sbjct: 273 RLDAAIGRQALHASELGFRHPLTGEALTFKSELPEDMLKLEAMLR 317 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 174/314 (55%), Gaps = 24/314 (7%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + + G R+D+ L+E + +R+RI++ I D+ +LVN K KP K+ + + + Sbjct: 28 VLKEEAGSRIDKFLSERL-ELTRTRIQQLIKDENILVNEKKT-KPAYKIEENDTIKVVIP 85 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 E +P++I ++I+YED D+ +INK +VVHP G+ GT++NA+L++ ++ + Sbjct: 86 ELETVEIKPENIDIEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSGIN 145 Query: 131 ---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 R GIVHRLDKDT+GL+++AK A +L + + + + Y A+ G + G + Sbjct: 146 GEIRPGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGRIV 205 Query: 187 EPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 I R R M V GK A+T+Y ++ T +++ +ETGRTHQIRVHM H+ Sbjct: 206 TQIGRDKNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKVHIETGRTHQIRVHMKHL 265 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 +P++GD VY GR K RQ LHA L HPI+ +E+ A +P+ Sbjct: 266 GYPILGDSVY-GRTDTEK--------------RQMLHAYKLEFQHPITEENLEFIAKLPE 310 Query: 304 DMVELIEVMRADFE 317 D + ++ +FE Sbjct: 311 DFKKALKKCGLEFE 324 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 174/314 (55%), Gaps = 10/314 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ V E +RLDQ L+ ++P+YSRS ++ I D V +GK KP KV G+++ Sbjct: 8 LSFMVDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKVRKGQEIT 67 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E +P++IP+DI++EDEDI ++ KP +VVHP G+ GT++NALL+++ I Sbjct: 68 LVIPPPETLEIKPENIPVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALLYHFRNI 127 Query: 127 ADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 ++ RAGIVHRLDKDT GLM++AK+ A L + Q R + + Y AV G + Sbjct: 128 SEYGGKERAGIVHRLDKDTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTGIVQNDH 187 Query: 183 GTVDEPISRHPTKRTHMAVHPMG-KPAVTHYRIMEHFRVH--TRLRLRLETGRTHQIRVH 239 G +D PI R R M + A+T Y + T + ++L TGRTHQIRVH Sbjct: 188 GFIDLPIGRSIYNRKKMGTEATNLRDALTEYWVKNRSEKENLTVVDIKLHTGRTHQIRVH 247 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH- 298 + I HPL D VYG + + SE S + AL A + HP +G +++ Sbjct: 248 FSAIGHPLFNDKVYGFKKSQLR--SEKMRSISDQTLYHALLAYRIAFDHPRTGEKIDITL 305 Query: 299 APIPQDMVELIEVM 312 +P+ + ++IE + Sbjct: 306 QKLPEHISKVIEAI 319 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 172/324 (53%), Gaps = 38/324 (11%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V E+ G R+D L + YSRS+I++ + + V+G++ +P KV G++V Sbjct: 7 VPESANGFRIDLFLTQSCDGYSRSQIRDAVQNDGAEVDGRII-RPSYKVKAGQKVRFRVP 65 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV- 129 P++IPLDI+YED+ +++INKP +VVHP GN GT+ +AL + ++DV Sbjct: 66 PPASDDTVPENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSDVG 125 Query: 130 --PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVD 186 R GIVHRLD+DT+G++VVAK L R + +EY A+ G + + Sbjct: 126 GPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDWIH 185 Query: 187 EPISRHPTKRTHMAV---HPMGKPAVTHYRIME-HFRVHTRLRLRLETGRTHQIRVHMAH 242 I RHP +R A+ H K A T Y ++E H RV TR+ +R +TGRTHQIRVH+AH Sbjct: 186 ASIGRHPYQRDKQAIREGHATSKTASTFYEVVERHGRV-TRVDVRPKTGRTHQIRVHLAH 244 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRK---------------------FDRQALHA 281 I P++ D +YGG SE S +R+ RQALHA Sbjct: 245 IGCPILCDRLYGGH-------SELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHA 297 Query: 282 TMLRLYHPISGIEMEWHAPIPQDM 305 L +P +G EM AP+P D+ Sbjct: 298 KALTFTNPQTGKEMTLTAPLPPDL 321 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/318 (33%), Positives = 172/318 (54%), Gaps = 33/318 (10%) Query: 19 RLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI--------- 67 RLD+ L E+ DYSRS I++ I ++ + VN ++ V Q+ I Sbjct: 14 RLDKLLVELLTSYDYSRSYIQKLIKEECISVNNQIITSNNFLVKPNSQIIITIKDPVLDP 73 Query: 68 NAEIEEEARFEP-----QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 N ++ +P +DI L+I+Y+D+D+++INK ++ VHP N + T++NALL Sbjct: 74 NITKNKDPVLDPNITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLAS 133 Query: 123 YPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 ++ + R GIVHR+DK TTGL++VAK L E + +I +EY A+ G + Sbjct: 134 DVELSSINGELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVI 193 Query: 180 TAG-GTVDEPISRHPTKRTHMAVHPMG-KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 G +D PI R T R M+V K A+T + ++E F +T ++ +++TGRTHQIR Sbjct: 194 KPNKGLIDAPIGRSQTDRKKMSVTAKNSKHAITTFEVVERFLKNTLIKCQIQTGRTHQIR 253 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH +I HP++ DP+YG + + Q LHA L+ HPI+ E+E Sbjct: 254 VHFNYINHPVLNDPIYGKKHQEFTDFG------------QYLHAYKLKFTHPITKKEIEL 301 Query: 298 HAPIPQDMVELIEVMRAD 315 +P+P++ + I+ +R + Sbjct: 302 ISPLPKEFDDKIKELRGE 319 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 116/303 (38%), Positives = 166/303 (54%), Gaps = 32/303 (10%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 A V G+RLD+ L + P++SR+ ++ + V +V + +KV+ G+Q+ + Sbjct: 43 AVVEAAAHGERLDKWLVRIAPEFSRAHLQGLVEGGHVRCGEQVLRQSHKKVMAGQQIEVA 102 Query: 69 A-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + F + + L +V+ED +++I+KP LVVHP AG+ GT+LN LL ++ A Sbjct: 103 LWPTAQSTAFRAEAMTLAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAA 162 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVD 186 +PRAGIVHRLDKDT+GLM+VAK++ A T LV ++ R++ REY A+ G + G +D Sbjct: 163 HLPRAGIVHRLDKDTSGLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVID 222 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-----------------RVHTRLRLRLE 229 P+ R P R MA+ GKPA T R + R + + +L Sbjct: 223 APLGRDPVSRVRMAIVASGKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLH 282 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH+A HPL+ D +YGG P AF RQALHA L L HP Sbjct: 283 TGRTHQIRVHLASRGHPLLADAMYGGAP--------AF-----GLQRQALHAARLHLLHP 329 Query: 290 ISG 292 I G Sbjct: 330 IDG 332 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 180/333 (54%), Gaps = 35/333 (10%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV GQRLD L PD SRSR+K + D +V V+ + ++ K+ GGE V + Sbjct: 30 TVPAEAAGQRLDAWLTTQLPDVSRSRVKLLLDDGQVTVD-SLKERASLKLRGGESVEVRG 88 Query: 70 E-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPD-----GTVLNALLHYY 123 E R +DIPLDI+YED+D+I++NKP ++VH G+G D GT++NALL Sbjct: 89 EPAPPPLRAMAEDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGRQ 148 Query: 124 PPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 ++ R GIVHRLDK+T+GL++VA+ A RL E +REI + Y A+ GH+ Sbjct: 149 EKLSKTGGDLRPGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHIA 208 Query: 181 AG-GTVDEPISRH--PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTR------LRLRLETG 231 GT++ I+R R + A++HYR+ R+ TR + +R+ETG Sbjct: 209 EDRGTINAAIARDVIRRTRMTTRRTEGARTAISHYRVQR--RIETRWGKFTLVSVRIETG 266 Query: 232 RTHQIRVHMAHITHPLVGDPVYGG----------RPRPPKGASEAFISTLRKFDRQALHA 281 RTHQIRVH++ I HP+VGD YG R R + + +S R F LHA Sbjct: 267 RTHQIRVHLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNF----LHA 322 Query: 282 TMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 L+ HP S + AP+P ++V +E + + Sbjct: 323 AELKFPHPRSEKPLHLEAPLPAELVAFLEQLES 355 >UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S119_FINM2 Length = 307 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 175/309 (56%), Gaps = 18/309 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 + ++ RLD LA + SRS I+++I D++VLVN K K K+ +++ + E Sbjct: 7 IDDSNQNTRLDVFLANEV-ELSRSEIQKFIEDKKVLVNYK-PQKKNYKLNSNDKIKFDYE 64 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 +E+ Q LD+VYED+ + IINK +D++VHP T++N L++ + ++DV Sbjct: 65 -KEDKTIRAQKHDLDVVYEDDYLAIINKDKDVIVHPTETIYSDTLVNYLMYNFKNLSDVD 123 Query: 131 ---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 R GIVHRLDKDTTGL+++AK +L E ++ EI + Y + G + GT+ E Sbjct: 124 GDYRRGIVHRLDKDTTGLIIIAKDNDTHLKLKEIIKNHEIIKTYLCIVHGKIDESGTIKE 183 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 ++R+P R M V GK +++ Y +++ ++ ++++++TGRTHQIRVHM +I HP+ Sbjct: 184 YMTRNPKDRKKMMVSDEGKLSISQYERLDYNDDYSLVKVQIKTGRTHQIRVHMNYIHHPI 243 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 +GD +YG + E + FD Q LHA L+ HP + ++ + D + Sbjct: 244 LGDKLYGLKK-------EKIL-----FDSQVLHAYNLQFIHPQTHEKINVIGKLKPDFMT 291 Query: 308 LIEVMRADF 316 IE + D+ Sbjct: 292 AIEKTKLDY 300 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 176/328 (53%), Gaps = 26/328 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFP---DYSRSRIKEWILDQRVLVNGKVCD---- 53 +A+ V+ ++ G+RLD LA + +RSR++ I RV V + Sbjct: 3 LAETSSFAFVVAPHEAGRRLDLVLATRAAGSAELTRSRLQSLIRQGRVRVESAGVEAGPL 62 Query: 54 KPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG 113 KP + G++V + E +++ +YEDEDI+++ KP LVVHP G+ G Sbjct: 63 KPGMLLKAGDRVDLQVPPPEATELVAEEVEFTPLYEDEDILVLVKPPGLVVHPADGHRQG 122 Query: 114 TVLNALLHYYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 170 T+++ LLH+ ++ + R GIVHRLDKDT+G +VVAK A LV+ + RE+ + Sbjct: 123 TLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKT 182 Query: 171 YEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRV-HTRLRLR 227 Y+A+ G + G V PI RHP R MAV G+ AVTH+R+ + F +T + L Sbjct: 183 YQALLRGILAEDTGQVVLPIGRHPVHRKKMAVRREGGREAVTHWRVRQRFSAGYTLVELL 242 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRP--PKGASEAFISTLRKFDRQALHATMLR 285 LETGRTHQIRVHMA + HPL GD +YG P P G DRQ LHA L Sbjct: 243 LETGRTHQIRVHMAALGHPLAGDRLYGRNPEKDMPYG-----------IDRQWLHAWRLA 291 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMR 313 HP SG + + AP+ D+ ++ +R Sbjct: 292 FNHPRSGRRLTFTAPLWVDLQASLDRLR 319 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/321 (38%), Positives = 169/321 (52%), Gaps = 30/321 (9%) Query: 13 ENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 + G RLD+ A D SR R++EWI LV+G+V + K K+ G E + I Sbjct: 24 SSDCGLRLDKFWARELADEGVSRGRVQEWIESGLALVDGEVVTRGKHKLAGRETLRIGDA 83 Query: 71 IEEEARFEPQDIP--LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA- 127 + Q +P L++V+ED + +I+K L HP G P T++N LLH +P +A Sbjct: 84 GVAPSDDAAQAVPGELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLHRWPDVAS 143 Query: 128 -----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTA 181 D R GIVHRLDKDT+GLMVVA T + RL R + + Y AV +G Sbjct: 144 DISGMDRQRPGIVHRLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVVLGRPAQP 203 Query: 182 GGTVDEPISRHPTKRTHMAVHPMG-KPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRV 238 GT+D P+ RHP+++T MAV G + AV+ YR++ + + + +R+ TGRTHQIRV Sbjct: 204 AGTIDAPMGRHPSQKTRMAVVARGGREAVSDYRVLWTGPRGLASLVAVRIHTGRTHQIRV 263 Query: 239 HMAHITHPLVGDPVYGGRP------RPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 HMAHI HPL+GD YG R RP + A A RQ LHA L HP + Sbjct: 264 HMAHIGHPLLGDSAYGPRENVEWSRRPDRLAGLA--------PRQMLHAFHLSFRHPATC 315 Query: 293 IEME-WHAPIPQDMVELIEVM 312 + W P P D L+ + Sbjct: 316 ERVTLWRRP-PADFCTLLAAL 335 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 168/312 (53%), Gaps = 16/312 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV + R D+ LA ++SR ++ D ++ G V V G+ + Sbjct: 5 TYTVPDTIRHGRADKVLAAGVTEHSRVALQRS-FDAGLVTRGGVPIGRDTTVTAGDTIEF 63 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----Y 123 + + + DIPL +++ED+ ++ +NK +VVHPG + T+++ALL + Sbjct: 64 SFAEIKPTEIKAVDIPLTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSL 123 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAG 182 I V R GIVHRLDK+TTG++VVAKT A L + R + +EY A+ G Sbjct: 124 SGIGGVERPGIVHRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLS 183 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR-VHTRLRLRLETGRTHQIRVHMA 241 G++D I+RHP R M V G+PA T + ++E F + +R R+ TGRTHQIRVH+ Sbjct: 184 GSIDRAIARHPVHRHRMTVGEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLK 243 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HP++GD +YG +P P A R LHA L L HPISG E++ AP+ Sbjct: 244 SLGHPILGDALYGWKPEPRLATQPA---------RVMLHAEHLVLTHPISGKELDLRAPL 294 Query: 302 PQDMVELIEVMR 313 P+D V +I+ +R Sbjct: 295 PKDFVAMIKELR 306 >UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4_MAIZE Length = 439 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 161/339 (47%), Gaps = 57/339 (16%) Query: 32 SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDE 91 SR+R++ I V VNG+ K V GG+ V+ + R E +DIPLDIVYED+ Sbjct: 86 SRARVQASIRAGLVAVNGRPVSKVSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDD 145 Query: 92 DIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-----------------PPIAD------ 128 ++++NKP +VVHP GN GT++NA+LH+ P +D Sbjct: 146 HVLVVNKPAHMVVHPAPGNAKGTLVNAILHHCKISTFTCLARSSAGDECPDSSDEDTDVF 205 Query: 129 -----------------VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 + R GIVHRLDK T+GL+VVAK + RL E + I R Y Sbjct: 206 HVDQFAAEDVSSEVRNALVRPGIVHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVY 265 Query: 172 EAVAIGHMT-AGGTVDEPISRHPTKRTHMAV-----HPMGKPAVTHYRIMEHFRVHTR-- 223 ++ G G ++ I+R P R M H + A + Y++ E F Sbjct: 266 ISLTCGAPNPNSGRIEASIARDPNNRIRMTAIAGSGHRYARNAASRYKVREVFAGGGSAL 325 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKF 274 + RLETGRTHQIR H +I PL+GD YGG RPR P + L K Sbjct: 326 VEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTQSMALSLLRPRSPSKYHSGLSNLLSKV 385 Query: 275 DRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 DR LHA L HP SG +E+ P P D +E++ +R Sbjct: 386 DRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGELR 424 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/312 (36%), Positives = 170/312 (54%), Gaps = 13/312 (4%) Query: 10 TVSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T + G RLD + D SR++++ I LV+G++C KP K+ GGE + + Sbjct: 18 TAVVDAAGTRLDAFWSARLASEDISRAKVRAAIEAGLALVDGEICRKPGLKLRGGEALTL 77 Query: 68 NA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 E EA+ E D L ++Y D D++++NKP L +HP + PDGT++N LLH++P + Sbjct: 78 RLPETPSEAKAE--DGELKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHFPDM 135 Query: 127 ADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGG 183 + R GIVHRLDKDT+GL++VA+T A+ L R + + Y A+ G + G Sbjct: 136 RAMAGDRPGIVHRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDG 195 Query: 184 TVDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 240 ++ P+ R P T MA V G+ A + +++ + L + + TGRTHQIRVHM Sbjct: 196 VIELPVGRDPKHPTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQIRVHM 255 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 A + HP+VGD VYG R ++ L K RQ LHA L HP +G E+ + P Sbjct: 256 AAMGHPIVGDAVYGARQHSDWTRRGGAMARLAK--RQMLHAWKLAFSHPGTGEELSFCQP 313 Query: 301 IPQDMVELIEVM 312 P D L+ ++ Sbjct: 314 PPADFWRLLLML 325 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 163/311 (52%), Gaps = 17/311 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 ++ TV E GQ + + L + + SR + + NG V EK+ G+++A Sbjct: 6 ISFTVDEADAGQTVREVLQKRY-GVSRRLLIRAKFKGSITRNG-VLVFVNEKLQAGDKIA 63 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E E E P+D+PL I YEDED+++I KP LVVHP +P GT+ N ++ Y+ Sbjct: 64 VMVEEEAEETVAPEDMPLSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIAYWKKR 123 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTV 185 + + V+RLDKDT+GLM+VAK A + Q R + R Y A+ G + + GT+ Sbjct: 124 GENRKFRAVNRLDKDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTI 183 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 + PI V P G+ AVTHYR++ + + ++LETGRTHQIRVHM+ H Sbjct: 184 NTPIGLAENSFITRQVRPDGQTAVTHYRVLARGEGMSFVEVKLETGRTHQIRVHMSSEGH 243 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL GD +YGG RQALHA L HP SG+ M W P+P DM Sbjct: 244 PLAGDDLYGGER--------------EHIGRQALHAWGLSFVHPRSGLAMSWEEPLPNDM 289 Query: 306 VELIEVMRADF 316 +L + D+ Sbjct: 290 EQLAQQFFPDY 300 >UniRef50_Q6KHW4 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q6KHW4_MYCMO Length = 298 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 107/296 (36%), Positives = 167/296 (56%), Gaps = 23/296 (7%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 R+D+ LA DYSR+ I++ I + +V VN + K K+ +Q+ I ++ +E Sbjct: 12 NRIDKFLANS-TDYSRNDIQQLIDEHQVYVNDILVRKASFKIKENDQIEIKKQLIKETNA 70 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL-HYYPPIADVP---RAG 133 Q+I LDIV+E+ED +IINK +VVHP GN T++NALL H+ ++++ R G Sbjct: 71 IAQNINLDIVFENEDFLIINKRSGMVVHPAPGNMQDTLVNALLFHFKNNLSNINGEIRPG 130 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISRH 192 IVHR+DKDT+GL++VAKT A L++ +I R+Y+A+ +G M T ++ PI R+ Sbjct: 131 IVHRIDKDTSGLLLVAKTNEAHNYFALLLKKHQIERKYQAIIVGKMDHTITNINLPIGRN 190 Query: 193 PTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 + R M V K A T ++ H+ ++ L+TGRTHQIRVH+AHI P+ GD Sbjct: 191 TSSRLKMEVTAHNSKEAFTKITSLKASETHSLIQCELKTGRTHQIRVHLAHINKPIYGDN 250 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 +YG + + F+ Q LHA L + + ++ P+P++M E Sbjct: 251 IYGKK--------------VDDFN-QRLHAYELSFTYK-DNKQYSFNVPLPKEMQE 290 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 17/307 (5%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVC--DKPKEKVLGGEQVAINAEIEEE 74 RLD+ +A + SR+++++ I D ++L+ + + KV ++I + + Sbjct: 28 NNRLDKFIASKL-NISRNQVQQLIKDSKILLFDTIIRDNNHITKVNDIYNISIPIKTISD 86 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL-HYYPPIADVPRA- 132 IP+ +VYED DIIIINK + VHPGAG + T++NAL+ HY ++ V +A Sbjct: 87 TITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAHYGNSLSHVGKAT 146 Query: 133 --GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPI 189 GI+HRLDKDT+GLMV+AK + L + L +++I +EY AV G T+ I Sbjct: 147 RPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTIKNYI 206 Query: 190 SRHPTKRTHMAVHPM---GKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHMAHITH 245 P + M V + GK A+T Y+ + F + + ++ R+ TGRTHQIRVHM++I + Sbjct: 207 CVKPNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIHTGRTHQIRVHMSYIGN 266 Query: 246 PLVGDPVYG-GRPRPPKGASEA-FISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 ++GD YG + K A ++ I+TL+ RQALHA L HP S +E+H+ IP Sbjct: 267 SIIGDQKYGKNNSKSVKYAKQSTIINTLK---RQALHAYKLGFTHPTSNTYIEFHSYIPN 323 Query: 304 DMVELIE 310 D+ LI+ Sbjct: 324 DIQMLID 330 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 175/310 (56%), Gaps = 24/310 (7%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G+RLD +AE + +R+RI++ I D + VN K KP KV + + + E+E Sbjct: 12 GKRLDLYIAER-TELTRTRIQQLIKDGNINVNNKKS-KPSYKVEKNDFIEMIIPDEKEID 69 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---RAG 133 P++I + I+YED DI +I+K +VVHP G+ GT++NA++++ ++ + R G Sbjct: 70 LVPENINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGINGEIRPG 129 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRH 192 IVHRLDKDT+GL+++AK A RL E I + Y A+ G + G ++ I R Sbjct: 130 IVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLETLIGRD 189 Query: 193 PTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 P R MAV GK A+T++++++ + +++ ++TGRTHQIRVHM ++ +P++GD Sbjct: 190 PKDRKKMAVVKTNGKTAITYFQVLDKNEKFSLVKVNIQTGRTHQIRVHMKYLGYPVLGDS 249 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE- 310 VYG R K A RQ LHA L HP++ M+ + +PQD + ++ Sbjct: 250 VYG---RDNKIAG-----------RQMLHAYKLEFLHPVTQKAMKIISELPQDFEKALKE 295 Query: 311 --VMRADFEE 318 + +FEE Sbjct: 296 TGLEMGNFEE 305 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 165/278 (59%), Gaps = 21/278 (7%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +R+D L++ D +RSRI+E I +LVNGK K KV G+++ I+ + +E Sbjct: 11 ERIDIYLSKKL-DETRSRIQELIKSNNILVNGKKT-KASYKVNFGDEIFIDIPLLKEVDI 68 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP---RAGI 134 PQDI +DIVYED+ + IINK +VVHP G+ + T++NA+++ ++ + R GI Sbjct: 69 IPQDIDIDIVYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGI 128 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHP 193 VHRLDK+T+GL+++AK +L E + +EI + Y A+ G + G ++ I R+P Sbjct: 129 VHRLDKNTSGLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNP 188 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 R MAV GK A+T++ +++ + L++ LETGRTHQIRVH++H P++GD VY Sbjct: 189 NDRKKMAVVDNGKLAITNFEVIDSNEKFSLLKVDLETGRTHQIRVHLSHFFFPILGDSVY 248 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 G + ++DRQ LHA ML HPI+ Sbjct: 249 GRKD---------------EYDRQMLHAYMLNFIHPIT 271 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 166/313 (53%), Gaps = 20/313 (6%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G RLD+A+A + +RSR + VL+NGK K + + + I E Sbjct: 3 GLRLDKAMALIPEIGTRSRASHLLESNSVLLNGKPA-KASVAIKENDLIEIQLPEPEPTE 61 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA---DVPRAG 133 +P D+ LD+++EDED+I+INKP LVVHP AG+ T++NAL+H+ ++ R G Sbjct: 62 LQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGEERPG 121 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRH 192 IVHRLDK+T+G++V+AK A L + R R Y AV +G T G+V ++RH Sbjct: 122 IVHRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSFLARH 181 Query: 193 PTKRTHMA----------VHP-----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 P R A P +GK AVTH+ +++ + L+L+LETGRTHQIR Sbjct: 182 PVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQRKSGMSYLKLKLETGRTHQIR 241 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM+ P+ GD +YG + + A LR R LHA L HP + M + Sbjct: 242 VHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTKERMFF 301 Query: 298 HAPIPQDMVELIE 310 P+D++ LI+ Sbjct: 302 TKDWPEDVLVLIK 314 >UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D n=11 Tax=Chlamydiaceae RepID=C4PNG9_CHLTZ Length = 335 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 124/330 (37%), Positives = 170/330 (51%), Gaps = 23/330 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV-LGGEQVAI 67 + V + QL RLD+ L YSR+ ++ I RV VNG+V + + LG Sbjct: 13 SFVIDEQLTGRLDKGLVSYNGAYSRAFYQQQIELGRVRVNGRVYTRVSHPLSLGDVVEVE 72 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH-----Y 122 E EE + P+DIPLD VYED+ I++INKPRD+VVHP G+ GTV++ALLH Sbjct: 73 LIEEEEPSSLIPEDIPLDKVYEDDMILVINKPRDMVVHPAPGHTQGTVVHALLHEIGERL 132 Query: 123 YPPIADVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + P R GIVHRLDKDT+GL++ KT A+ E +++ + Y A+ I + + Sbjct: 133 KQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKALYSELFATKQVKKLYVAICI-NAPS 191 Query: 182 GGTVDEPISRHPTKRTHMAVHPM----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + I+RHP KR M V GK A+TH ++ + + L ETGRTHQ+R Sbjct: 192 QELIHTRIARHPLKRKEMTVLSTHAEGGKEAITHCHVLATNGRLSVVALYPETGRTHQLR 251 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM H+ P++GDPVYG I+ D+Q LHA L HP S ++ Sbjct: 252 VHMKHLGTPILGDPVYG----------IPSINFRYGLDKQQLHAYSLVFAHPESAERVKL 301 Query: 298 HAPIPQDMVELIEV-MRADFEEHKDEVDWL 326 +P DM LIE R DW Sbjct: 302 VTKLPDDMTSLIEKEFREGVSILDGSCDWF 331 >UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Tax=Magnoliophyta RepID=PUS2_ORYSJ Length = 445 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 164/336 (48%), Gaps = 57/336 (16%) Query: 32 SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDE 91 SR+RI+ I V+VNG+ K V GG+ V+ + R EP+DIPLDIVYED+ Sbjct: 88 SRARIQASIRAGLVVVNGRPVSKVSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDD 147 Query: 92 DIIIINKPRDLVVHPGAGNPDGTVLNALLHY-----YPPIA------DVP---------- 130 ++++NKP +VVHP GN +GT++NA+LH+ + +A + P Sbjct: 148 HLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVF 207 Query: 131 -------------------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 R GIVHRLDK T+GL+VVAK + +L E + I R Y Sbjct: 208 DIDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVY 267 Query: 172 EAVAIGHMT-AGGTVDEPISRHPTKRTHMAVHP-----MGKPAVTHYRIMEHFRV--HTR 223 ++ G G ++ PI+R P R M P + A + Y++ E F Sbjct: 268 ISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGHRYARHAASRYKVREVFAGGGSAL 327 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGG---------RPRPPKGASEAFISTLRKF 274 + RLETGRTHQIR H ++ PL+GD YGG RPR P + + K Sbjct: 328 VEWRLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKI 387 Query: 275 DRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 DR LHA +L HP SG +E+ P P D E++ Sbjct: 388 DRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLN 423 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 159/294 (54%), Gaps = 17/294 (5%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKE-KVLGGEQVAINAEIEEEARF 77 RLD +A+ D SRS + + D+ V VNG KPK+ KV G+ + I+ EE Sbjct: 18 RLDAYIADN-TDISRSFAERLVTDEFVKVNG--VSKPKKYKVKSGDSIVIDVPREEVPEL 74 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP-RAGIVH 136 P + ++I+Y+ ++ +INKP + VHP G+ D T++NA+L + D R GIVH Sbjct: 75 TPVKMDIEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAMLAEFDITDDNDLRPGIVH 134 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPTK 195 RLDKDT+GLM+VAK ++ L + R+I + Y AV G T+++PI RH Sbjct: 135 RLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKELEFTIEQPIGRHYKD 194 Query: 196 RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 R M V G+ + + R+++ +R+ TGRTHQIRVHM+H PL GD VYG Sbjct: 195 RKRMCVREDGRYSKSGVRVLKQNNNAFLAEIRIFTGRTHQIRVHMSHAGFPLAGDVVYGH 254 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 R S RQALH+ L P +G +M + +P+P DM ELI Sbjct: 255 RQ-----------SLKLPIKRQALHSFRLAFVSPFTGEDMVFESPLPLDMKELI 297 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 119/315 (37%), Positives = 173/315 (54%), Gaps = 15/315 (4%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A V++ A ++ + L++ L SR ++ E+ + VNG V KV Sbjct: 12 ALAVEVGADMAGKDVRTVLERKLGVSRSLLSRLKLTEY----GITVNG-VRAYTTAKVTE 66 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ VAI E E PQD+PL IV+ED+ ++++NKP ++VHP G+ T+ N ++H Sbjct: 67 GDSVAIRMEEEISEDILPQDLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIVH 126 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 ++ + R VHRLD+DT+GL+V+AK +L E LQ I + Y A G + Sbjct: 127 HWQVRGERVRFRPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSP 186 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRV 238 A GTV PI R+P V P G P+VTHY+ F +++RL+LETGRTHQIRV Sbjct: 187 ADGTVGAPIDRNPEDPHVRIVTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQIRV 246 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HM HI PL+GD +YG + G + + + RQALHA L L HP++ EW Sbjct: 247 HMKHIGCPLIGDGMYGLQ----TGKVDEWETAA---GRQALHAETLGLTHPMTKEWSEWT 299 Query: 299 APIPQDMVELIEVMR 313 A +P D+V+L +R Sbjct: 300 AALPPDLVQLELALR 314 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 181/320 (56%), Gaps = 30/320 (9%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNG-KVCDKPKEKVLGGEQVAINAEI 71 E + +R+D+ +++ + +R+ K I + V V+ K KP V G + + + Sbjct: 5 EVKYKERIDKYISDN-SEITRNDAKALIEQEAVYVDDRKFVRKPNYMVREGMVITVLRLL 63 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL-HYYPPIAD-- 128 E+E+ E D+PLDI YEDE ++I+NKP LVVHP G+ + T++NAL+ H+ ++D Sbjct: 64 EKESNIEAVDMPLDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDAN 123 Query: 129 -VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VD 186 + R GIVHR+DKDT+GL+++AK L + L+ +I R Y A+ G + T ++ Sbjct: 124 GLLRLGIVHRIDKDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKIN 183 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV----HTRLRLRLETGRTHQIRVHMAH 242 PI R R M++H GK +VT+ +++ F + ++ ++ LETGRTHQIRVH+A+ Sbjct: 184 LPIQRDTKNRKLMSIHKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIRVHLAY 243 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HP+ GD +YG ++ +F+ Q LHA L HP+ +E ++ IP Sbjct: 244 IKHPVYGDSIYG--------------KSVDEFN-QRLHAYKLSFMHPVINKLIEVYSDIP 288 Query: 303 QDMVELIEVMRADFEEHKDE 322 ++ ++ D+E K++ Sbjct: 289 KEF----DIAEYDYELLKND 304 >UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 Tax=Leptospira RepID=Q04XF3_LEPBL Length = 312 Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 105/260 (40%), Positives = 152/260 (58%), Gaps = 11/260 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVL-VNGKVCDKPKEKVLGG 62 ++L A V E G RLD+ L F D SR+ I++WI V + K+CDK KV G Sbjct: 3 LELKAEVLEEFSGNRLDRFLKFSFGDEMSRATIQKWIECGYVRNQDRKICDKSSWKVKTG 62 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 EQ ++ EP + L +V E ED +II+KP + H G G+ +++N LLH+ Sbjct: 63 EQYFLSIPPRPPLSLEPIPMTLPVVLEREDYLIIHKPPGIASHSGPGDRSPSLVNGLLHH 122 Query: 123 YPPIADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + ++ V R GIVHRLDK T GLM++AK A +L E ++REI ++Y A GH+ Sbjct: 123 FKELSKVGGEARPGIVHRLDKPTEGLMLIAKNDRAHGKLSELFRKREIEKKYYAWIQGHL 182 Query: 180 TA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-----RVHTRLRLRLETGRT 233 A GT+D PI+RHP +R M V P G+ +VTHY+++++ R + + + LETGRT Sbjct: 183 PAETGTIDLPIARHPIERLKMTVSPKGRKSVTHYKVLKYVNSRSGRKFSFVEVGLETGRT 242 Query: 234 HQIRVHMAHITHPLVGDPVY 253 HQIR+H P+VGD +Y Sbjct: 243 HQIRIHFQSQRCPVVGDLLY 262 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 170/330 (51%), Gaps = 23/330 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 + V + +L RLD+ L YSR+ ++ I RV VNG+V + + G+ V + Sbjct: 16 SFVVDERLIGRLDKGLVLHNNAYSRAFYQQQIDLGRVRVNGRVQTRASYLLSQGDLVDLE 75 Query: 69 -AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH-----Y 122 E E + P++IPLD VYED I++INKPR++VVHP G+ GTV++ALLH Sbjct: 76 LVEEETPSSLTPENIPLDKVYEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGERL 135 Query: 123 YPPIADVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + P R GIVHRLDKDT+GL++ KT A+ E +++ + Y A+ I + A Sbjct: 136 KQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKAVYSELFSSKQMKKMYIAICI-NSPA 194 Query: 182 GGTVDEPISRHPTKRTHMAVHPM----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + I+RHP KR M V GK A+TH ++ + + L ETGRTHQ+R Sbjct: 195 QKHIHTRIARHPVKRKEMTVLSKDTEGGKEAITHCHVLASNGRLSVVALYPETGRTHQLR 254 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM H+ P++GDPVYG I+ D+Q LHA L HP S +E Sbjct: 255 VHMKHLGTPILGDPVYG----------VPSINFRYGLDKQQLHAYSLVFTHPESAERVEL 304 Query: 298 HAPIPQDMVELIEV-MRADFEEHKDEVDWL 326 +P DM LIE R DW Sbjct: 305 VTKLPDDMTSLIEKEFREGVSIVGGSCDWF 334 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 140/243 (57%), Gaps = 17/243 (6%) Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 E E+ P +PL IVYEDEDI++INK + +HP G+ D T+ NA+ Y+ + Sbjct: 55 EEEDSGNIVPVKLPLSIVYEDEDILVINKDAGVPIHPSQGHYDNTLANAVSWYFHEKGEA 114 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 +++RLD+DTTGL+V+A+ + + L E + R I REY A+ +GH GTVD PI Sbjct: 115 FTYRVINRLDRDTTGLLVLARHMLSACILSEQMTGRRIRREYRAIVLGHTPEEGTVDSPI 174 Query: 190 SRHPTKRTHMAV-HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHP 246 +R V H G+ AVTH+R + + + + + L LETGRTHQIRVHM I HP Sbjct: 175 ARAEGSTIERRVDHETGERAVTHFRTLLYNEEKDLSLVSLSLETGRTHQIRVHMRSIGHP 234 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L GD +Y R DRQ LH+ +LR HPI+G EME+ A +P+DM Sbjct: 235 LPGDFLY--------------CPDYRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDMK 280 Query: 307 ELI 309 +L+ Sbjct: 281 QLL 283 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 130/225 (57%), Gaps = 15/225 (6%) Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138 P + LDIVYEDED+++I+KP D+ VHP N D T+ N L +YY + + RL Sbjct: 80 PVPMKLDIVYEDEDLLVIDKPADMPVHPSIHNFDNTLANGLAYYYESRGEAFVYRCITRL 139 Query: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTH 198 D+DTTGL++VAK + + L E +RREI REY A+ G A GTVD PI+R Sbjct: 140 DRDTTGLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGKTEAEGTVDAPIARVEGSVLE 199 Query: 199 MAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP 257 V G+ AVTHYR +E+ ++ +RL+LETGRTHQIRVHM +I HPL GD +Y Sbjct: 200 RCVDFQRGERAVTHYRTLEYRDGYSLVRLKLETGRTHQIRVHMKYIGHPLTGDFLYN--- 256 Query: 258 RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 R D QALH+ L HPI+G ME+ + P Sbjct: 257 -----------PDYRLMDHQALHSHYLAFRHPITGERMEFTSQPP 290 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 175/300 (58%), Gaps = 24/300 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +R D LA ++ DYSRS ++ QRV VN K+ K+ G+ + I E EE+ + Sbjct: 13 ERADSYLASIYKDYSRSYFQKLTDRQRVFVNDKIIP-VSHKLKRGDIITIEFEKEEKFQI 71 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YPPIADVPRAG 133 +P+ I +DI+YED+DI+++NK +VVHP G+ GT+LNAL+ Y Y P Sbjct: 72 KPEKIKIDIIYEDDDIVVVNKRSGIVVHPSYGHLSGTLLNALMGYSAGKYNPY------- 124 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRH 192 ++HRLDKDT+G++V AKT A+ + + LQ+R + + Y A G + G + P+ R Sbjct: 125 LIHRLDKDTSGVIVFAKTEKAKISISKQLQKRVVKKIYYAAVKGVIAENRGIIKAPLGRS 184 Query: 193 PTKRTHMAVHPMGKP-AVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 P R ++V+P+ K A+T ++++E +T L++R+ TGRTHQIR HM +I HP++GD Sbjct: 185 PKNRKLVSVNPLAKKVAITEFKVIERKDDYTLLKVRIITGRTHQIRSHMKYINHPVIGDK 244 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 YGG P L++ +RQ LHA + HP + +++ A +P DM + ++ Sbjct: 245 QYGG----PGTIG------LKRCERQMLHAHNITFTHPSTSKTVKFIAQLPNDMKAIFKL 294 >UniRef50_B6WA53 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6WA53_9FIRM Length = 299 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 169/300 (56%), Gaps = 20/300 (6%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD+ L+++F + R +IK++I ++++ VN K KP K++ +++ I+ ++ E A+ E Sbjct: 10 RLDKYLSDIFEEIPREKIKDFIKEKKIKVNNKKI-KPSYKLILEDEIEISDDLFERAKIE 68 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-----PPIADVPRAG 133 + + L IVYE++D II+K +++VHP GT++N LL+++ I R G Sbjct: 69 AEKMDLKIVYENKDYAIIDKDENVIVHPAGSIVSGTLVNGLLYHFGYNNLSHIGGDDRPG 128 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGTVDEPISRH 192 IVHRLDKDTTGLMV+AK+ + L + R+I +EY A+ G G + + R Sbjct: 129 IVHRLDKDTTGLMVIAKSNSSYKFLKNLFETRKIDKEYLAICNGIFKKKSGEIHTFMDRD 188 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 P R MAV G+ A++ Y ++ ++ +++++ TGRTHQIRVHM HI HPL+GDPV Sbjct: 189 PNNRRKMAVRNSGRDAISKYEVLSENDGYSLVKIKILTGRTHQIRVHMTHINHPLLGDPV 248 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YG + D Q LH L + G+ E+ A + +D + +V+ Sbjct: 249 YGN------------VKHKFNLDHQLLHCHKLG-FTDKDGVYREFEADVHEDFKKYQKVL 295 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 164/311 (52%), Gaps = 17/311 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V E R+D AL+++F SR+ + VL++GK K +K+ G + + Sbjct: 10 VPEGLADMRVDVALSKLF-GLSRTVSADLATKGDVLIDGKPATK-SDKITDGAWLEVLLP 67 Query: 71 IEEEARFEPQDI--PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL--HYYPPI 126 ++ +++ L+I+Y DED+I ++KP + HP G TV+ L Y Sbjct: 68 EPQKPLVPTEELVDGLEILYADEDLIAVDKPVGVAAHPTVGWDGPTVVGGLAAAGYRIST 127 Query: 127 ADVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 + P R GIV RLD T+G+MVVA + + L + + R +++ Y A+ GHM GT Sbjct: 128 SGPPERNGIVQRLDVGTSGVMVVAASERGYSVLKRAFKERTVSKTYHALVQGHMDPLAGT 187 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ I RHP+ AV GK AVTHY +E F + L + LETGRTHQIRVHM+ + Sbjct: 188 IEANIGRHPSSGWKFAVTSDGKHAVTHYETLEAFVAASLLEVHLETGRTHQIRVHMSALH 247 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HP GDP+YG P+ +S +RQ LHA L YHP G +E +P P D Sbjct: 248 HPCCGDPMYGADPQ---------LSARLGLNRQWLHAVKLGFYHPADGRWLEIESPYPPD 298 Query: 305 MVELIEVMRAD 315 + +EV+RA+ Sbjct: 299 LRHALEVLRAE 309 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/303 (36%), Positives = 161/303 (53%), Gaps = 11/303 (3%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 QR+D+ ++ + SR+R + I +V ++G+V + G+ I +++ + Sbjct: 16 QRIDKLISCAL-EISRNRAQGLIAGGQVTISGRVINNNSYLTKTGDVYTIVTAVQKPSTL 74 Query: 78 EPQ-DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIADVPRA 132 P DI L +VYED D+I+I+K + VHPG G T+ NALL + + R Sbjct: 75 SPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGLQSVGSSSRP 134 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISR 191 GIVHRLDKDT+GLMV AKT A RL E L + +EY AVA G G + I Sbjct: 135 GIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKRGVIHTNIRV 194 Query: 192 HPTKRTHM-AVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 + T M A + GKPA T Y + + V + +R L TGRTHQIRVHM+HI H +VG Sbjct: 195 KRSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLHTGRTHQIRVHMSHIGHSIVG 254 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D YG + K ++ F RQALHA++L HP +G +E+ + D+ +LI Sbjct: 255 DQKYGKNCK--KCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSKPADDIQQLI 312 Query: 310 EVM 312 + Sbjct: 313 SAL 315 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 167/309 (54%), Gaps = 22/309 (7%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 R+QL ++ Q G+RLD+ L P+ SR+ +++ + V+G +P K+ G+ Sbjct: 3 RLQLK--ITAGQAGKRLDRILGATVPELSRAALQKVVQAGCCTVDGLPEKRPAAKMRMGQ 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V ++ E R +P++ L+++++D+ +++ NKP L VHP P+ T++ LL + Sbjct: 61 TVTLDLP-EHPDRLQPEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRF 119 Query: 124 PPIADV--PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 P ++ + R GIVHRLDKDT+GL+VVA T L + R++ +EY A+ G Sbjct: 120 PQLSRLEGQRPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLPPL 179 Query: 182 GGTVDEPISRHPTKRTHMAVHP---MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQI 236 G EP+ RHPT + MAV P G+ A T +R + + + L +R+ TGRTHQI Sbjct: 180 EGQCREPLGRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM H+ +PL+GD +Y PK RQ LHA L HP SG +M Sbjct: 240 RVHMTHLGYPLLGDRLYA-----PKAVQN-------MAPRQMLHAWRLGFTHPASGEDMR 287 Query: 297 WHAPIPQDM 305 + P P DM Sbjct: 288 FTCPPPHDM 296 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/307 (36%), Positives = 159/307 (51%), Gaps = 15/307 (4%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + G RLD L+ + SRS + I V GKV K V+ G+ ++ Sbjct: 8 VEPSDAGNRLDLYLSGQL-ELSRSAVGRLISGGLVSGVGKV--KASRVVVSGDWFDVSMP 64 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 E PQD+P VY D+ + ++ K + VHPGAG DGT++N L+ + P+ Sbjct: 65 EPSEESVVPQDVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGPLPGAG 124 Query: 131 -RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEP 188 R GIVHRLD T+GLMVVA+T A L +R + + Y A+ G + A GT+D P Sbjct: 125 LRPGIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQGTLDGP 184 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I R R MAV G+ AVT YR + + R+ETGRTHQIRVHMA I L Sbjct: 185 IGRSRYDRLKMAVRADGRRAVTRYRTLWTRGSLSLTACRIETGRTHQIRVHMASIGCYLD 244 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD +YG PK S F+ R LHA L +HP G M + +P+P +++ + Sbjct: 245 GDRLYG-----PKDVSRHFLE-----GRVFLHAWRLSFHHPSDGRTMNFRSPLPDELIGV 294 Query: 309 IEVMRAD 315 ++ +R++ Sbjct: 295 LKKIRSE 301 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 161/304 (52%), Gaps = 13/304 (4%) Query: 11 VSENQLGQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 ++ +G RLD + D SR+R++ I V+G C KP K+ GGE + +N Sbjct: 17 TTDGGVGTRLDVFWSARLADLEVSRARVRAAIEGGLATVDGADCRKPGLKLRGGETLTLN 76 Query: 69 A-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 ++ E E L ++Y D+++ +++KP L VHP G P+GT++N LLH++P + Sbjct: 77 LPQVASETVAEAGS--LRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGLR 134 Query: 128 DVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 ++ R GIVHRLDKDT+GL++VA T P + L R++ + Y A+ G GG Sbjct: 135 EMAGERPGIVHRLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGD 194 Query: 185 VDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMA 241 + PI R P RT MAV H G+PA + +R + + L + + TGRTHQIRVHMA Sbjct: 195 IRLPIGRDPKYRTKMAVPHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHMA 254 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 I HP++GD VYG P + R RQ LHA L HP+ + P Sbjct: 255 AIGHPIIGDAVYG--PHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPP 312 Query: 302 PQDM 305 P D Sbjct: 313 PPDF 316 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 150/283 (53%), Gaps = 26/283 (9%) Query: 45 VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLV 103 V VN VC+ + + ++ + ++ F +P+DIP+DI+YEDE +I +NK +V Sbjct: 47 VYVNAVVCE--------NDIIEVDLDFDDSGIFIQPEDIPIDIIYEDEFLIALNKQPGIV 98 Query: 104 VHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 163 VHP +P GT+ NA+ + V + V RLD+DT+G+++ AK Q L+ + Sbjct: 99 VHPTCSHPGGTLANAVAFHLQKKGIVKKIRPVIRLDRDTSGIIIFAKNPYCQEFLIRQMN 158 Query: 164 RREITREYEAVAIGHMTA---GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV 220 + +EY + I H GT+D PI+R P + P G PAVTHY ++E Sbjct: 159 DKTFIKEY--IGIVHKVLENDNGTIDLPIARKPGSIMLRHISPDGDPAVTHYTVLERLNG 216 Query: 221 HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY----------GGRPRPPKGASEAFIST 270 T ++ RLETGRTHQIRVH I HPL+GD +Y G P + + + S Sbjct: 217 ATLVKFRLETGRTHQIRVHCQAIGHPLLGDTLYPFEDTPYSLSGNNPHITQANTPSITSG 276 Query: 271 LRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 + RQALH+ HP + +E APIP+DM +E++R Sbjct: 277 I--ITRQALHSQRAVFLHPFTKKILEITAPIPEDMKSALEILR 317 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 163/316 (51%), Gaps = 11/316 (3%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV + G R+D L + F Y+ RI + V ++G+V ++V G+QV I Sbjct: 7 TVTVEKYLAGVRVDSFLVKHFRSYTSWRILRMVAAGLVTIDGQVAAT-TQRVHPGQQVTI 65 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + P+ PL+I++ED+ +++INKP L+ HP PDGT++NA+ HY + Sbjct: 66 QLTEPPDLFVPPEPTPLEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAVQHYLDKQS 125 Query: 128 DVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 P R GIVHRLD+DT+G M + K + L Q I++ Y A+ G +T Sbjct: 126 THPGLERPGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTDDQL 185 Query: 185 V-DEPISRHPTKRTHM----AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 V D PI R P + + A + + T R++E F HT + + TGR HQIR+H Sbjct: 186 VIDLPIGRAPGCSSALMSCRADALEAQASKTSLRVVERFPQHTLVEAKPRTGRMHQIRIH 245 Query: 240 MAHITHPLVGDPVY--GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 +A I P+VGD Y GG RP + +RQALHA L HP++ ++ Sbjct: 246 LATIGFPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEWQDF 305 Query: 298 HAPIPQDMVELIEVMR 313 AP+P D+ + IE+ R Sbjct: 306 QAPLPDDLRQAIELAR 321 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 101/265 (38%), Positives = 146/265 (55%), Gaps = 17/265 (6%) Query: 47 VNGKVCDKPKEKVLGGEQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVH 105 VNG+ + ++ GE++ + +EE + +DIPL I+YED+ ++IINK ++ Sbjct: 45 VNGQHAS-VRHQLRAGEELRVFFPVEERSEGMMAEDIPLCIIYEDDAVLIINKEANMSTI 103 Query: 106 PGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR 165 P +P G+V NALL +Y IV RLD+DT+GLM++AK L + Q++ Sbjct: 104 PSREHPAGSVANALLSHYDKQHLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQK 163 Query: 166 EITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRL 224 + R YEA+ G + G +D PI R V G+ AVTH+++++ T + Sbjct: 164 AVKRTYEAIVHGKIVEREGMIDAPIGRKSDSIIERTVCEDGQRAVTHFKVIDSTYHKTHV 223 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATML 284 L LETGRTHQIRVHMAH+ HPL+GD +YGGR K RQALH+ L Sbjct: 224 ALELETGRTHQIRVHMAHVGHPLLGDSLYGGRRDEMK--------------RQALHSKSL 269 Query: 285 RLYHPISGIEMEWHAPIPQDMVELI 309 YHPI EM + +P DM E++ Sbjct: 270 TFYHPILEKEMSFTIKLPSDMQEVL 294 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 163/312 (52%), Gaps = 39/312 (12%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG------GEQ 64 ++E Q GQ L L S+ I++W+ Q++ VN E VL G++ Sbjct: 12 INEKQDGQWLFSVLKTALK-ASKPVIQDWMSHQQIKVN-------HESVLNNMIVKKGDR 63 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V I+ + E + P+ LDI++ED ++IINKP + HP GT+ N + ++Y Sbjct: 64 VFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQ 123 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGG 183 + + VHRLD+DT+G +V AK A L + L+++ + R Y A+A G + T G Sbjct: 124 INGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRTKKG 183 Query: 184 TVDEPISR---HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRL---RLRLETGRTHQIR 237 T++ PI R HPT+R V P G+ AVTH+++M RL L LETGRTHQIR Sbjct: 184 TINSPIGRDRSHPTRRR---VSPGGQTAVTHFKVMAS-NAKERLSLVELELETGRTHQIR 239 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH+A + HPL GD +YGG + +RQALHA ++ HPI+ + Sbjct: 240 VHLASLGHPLTGDSLYGGGSKL--------------LNRQALHANKVQAVHPITDELIVA 285 Query: 298 HAPIPQDMVELI 309 AP P DM L Sbjct: 286 EAPFPADMKNLC 297 >UniRef50_C9KQC1 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQC1_9FIRM Length = 302 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 100/280 (35%), Positives = 154/280 (55%), Gaps = 19/280 (6%) Query: 45 VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVV 104 VLVNGK + +V G+++ + +E + P D+PLDI+YEDE +++NKP D++V Sbjct: 40 VLVNGKKNGDARLRVHTGDELTL--LWQEVSSVVPVDLPLDILYEDETFLVVNKPADMIV 97 Query: 105 HPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQR 164 HP T+++A+ Y+ + ++RLD+DTTG++++AK+ Q + + Sbjct: 98 HPTHRAARDTLVHAVAGYFERRGEAAGIHPLYRLDRDTTGIVILAKSARIQHAMTK--HH 155 Query: 165 REITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTR 223 +I REY A+A GH+ G +D PI R T+ H V G+ A+T Y + + ++ Sbjct: 156 GQIYREYLALAQGHLDCLSGRIDMPIGRDITRANHWQVRADGRRALTEYETIASWPAYSL 215 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATM 283 L++ L TGRTHQIRVH A + HPL+GD Y G + RQALHA Sbjct: 216 LKIHLLTGRTHQIRVHFAALGHPLLGDTAYDG--------------SCDTIPRQALHAWR 261 Query: 284 LRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEV 323 + +HP +G E+ APIP+DM LI E K+E+ Sbjct: 262 VHFFHPDTGKEIRIEAPIPEDMCRLIGSDTVSRETFKEEI 301 >UniRef50_Q2GEQ1 Ribosomal large subunit pseudouridine synthases, RluA family n=4 Tax=Neorickettsia RepID=Q2GEQ1_NEOSM Length = 330 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 118/321 (36%), Positives = 167/321 (52%), Gaps = 29/321 (9%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI- 67 V+E G RLD L P +SRS IK I R+ GK+ +P +V+ GE+ + Sbjct: 4 CIVAECDAGNRLDVFLHRCLPFFSRSFIKHCIKGSRIESEGKIQLEPSRRVVVGEEYHLF 63 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP--- 124 + +E + R PLD+ YED+ +++I KP LVVHPG GN + T++N L H+YP Sbjct: 64 DLPLERKPRHAFVQ-PLDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEK 122 Query: 125 -PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH---MT 180 D R GIVHRLDKDT G ++VAKT PA L + ++ I REY +A+ H + Sbjct: 123 LSSLDSSRPGIVHRLDKDTAGFLIVAKTNPAHLSLSQMIKEGVIRREY--LALVHSVPAS 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRV 238 G + +PI R +R M GKPA+T+Y ++ R + + RL +GRTHQIR+ Sbjct: 181 LSGEIKKPIKR--GQRKMMIGRCSGKPALTYYGVIARTVDRKCSLVHCRLGSGRTHQIRL 238 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HM I P+VGD +YG A AL A L+ HP + M ++ Sbjct: 239 HMKSIGCPVVGDKLYGLNRDADLCAPH-----------HALWAYSLQFRHPFTRKNMAFY 287 Query: 299 ---APIPQDMVELIEVMRADF 316 A I Q +E I + R+ F Sbjct: 288 IEPASIIQPFLEKISISRSLF 308 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 160/302 (52%), Gaps = 9/302 (2%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G+R+D ++ ++ D SR IK I + VL+NG+ K +KV + + ++ Sbjct: 12 GERIDVLISNIYKDISREYIKRIIKENGVLINGEKVFKSSKKVFENDVLEFEIPPPKKLD 71 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY---PPIADVPRAG 133 + QDI +DI+YED D+ ++ KP + H G G+ + T++NALL + I V R G Sbjct: 72 VKAQDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLSVIGGVERPG 131 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGTVDEPISRH 192 IVHRLD+ T GLMV+AK + +L + +E+ + Y+A+ G T++ I RH Sbjct: 132 IVHRLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQTIETFIRRH 191 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 PT R V GK A+T Y + + + + L +++ TGRTHQIRVHM++I HP+VGD + Sbjct: 192 PTNRLKFEVANEGKLAITKYSLEKPLKNASLLDIKIYTGRTHQIRVHMSYIGHPIVGDTL 251 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YG + E I R L A L HP S ME+ +P +++ + Sbjct: 252 YGYKHSYFDKTLEHMIGK-----RFLLVAYKLSFLHPKSQKPMEFEIDMPDYFKNVLKYL 306 Query: 313 RA 314 + Sbjct: 307 ES 308 >UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8D7_COPPD Length = 315 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 160/301 (53%), Gaps = 22/301 (7%) Query: 19 RLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE--QVAINAEIEEE 74 RLD AL E+ D SR+ I+ I V NG V KP +V G+ ++ + + I E Sbjct: 18 RLDLALMEIIDDEGISRTWIQNNIKAGLVRCNGDVVTKPSLRVKKGDLLEIRLRSRISE- 76 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV---PR 131 +P D+ +VY DE + +I+KP +LVVHP T+ + LL +P + +V R Sbjct: 77 --LQPADVEYSVVYYDEHLAVIDKPPNLVVHPAPSVKGLTLCHGLLKDFPQVKNVGSAER 134 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISR 191 GIVHRLDKDT+GLM+VA + L + + + ++R+Y G VD PI R Sbjct: 135 PGIVHRLDKDTSGLMLVALSEKGYAGLTKMISEKSVSRKYLVAVYGVANRPFEVDAPIGR 194 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 P T MAV P GK A T +R ++ + L L TGRTHQIRVH++H ++GDP Sbjct: 195 DPRNPTRMAVVPHGKNAYTRFRPVQCLEKVSLLEAELFTGRTHQIRVHLSHAGFYVLGDP 254 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 VYG E+ + R F LH+ L L HPI+G + + +P+P+D+ E + Sbjct: 255 VYGN--------VESRLLAPRVF----LHSYYLELEHPITGERLFFVSPLPEDLDECWHI 302 Query: 312 M 312 + Sbjct: 303 L 303 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/252 (40%), Positives = 149/252 (59%), Gaps = 18/252 (7%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI-NAEIEEEARF 77 R+D +A+ + SR + I V V+ KV +K + G+ ++I N E + + Sbjct: 17 RIDLVVAKHL-NVSRKISRYLIEANSVKVDNKVVNKVNFLLREGQFISILNNYQEPQLKV 75 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH-YYPPIADVP---RAG 133 E Q + +IVY+D DII+INKP++LVVHPG GN D T++N LLH + ++DV R G Sbjct: 76 EAQKVDFEIVYQDNDIIVINKPKNLVVHPGNGNWDKTLVNGLLHEFATNLSDVNGEIRPG 135 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRH 192 IVHRLDKDT+GL++VAK A L + L+ EI R+Y A+ +G + ++ PI R Sbjct: 136 IVHRLDKDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVGKIPHTKMRINLPIGRD 195 Query: 193 PTKRTHMAVHPMG-KPAVTHYRIM-------EHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 RT V K A+T+ ++ EHF + ++ LETGRTHQIRVH++HI Sbjct: 196 NQNRTKKVVSSFNSKNAITNVELINTFVYKNEHFSI---VKCILETGRTHQIRVHLSHIG 252 Query: 245 HPLVGDPVYGGR 256 +P+ GDPVYG + Sbjct: 253 YPIYGDPVYGKK 264 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 142/252 (56%), Gaps = 18/252 (7%) Query: 61 GGEQVAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G++V ++ E++ A + IPL IVYED+ +I+INKP + P +P GT+ NAL Sbjct: 56 AGDEVCVSFPPEQKGANMVAEPIPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANAL 115 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH- 178 LH+Y +V RLD+DT+GL++VAK L E ++ + R YEAV G+ Sbjct: 116 LHHYEQQQLQTTVHVVTRLDRDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYV 175 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 + GT+D PI R V G+ AVTHY +++ T + ++LETGRTHQIRV Sbjct: 176 IQLVGTIDAPIGRKGDSIIEREVRLDGQRAVTHYEVLQQKNEMTHVSIQLETGRTHQIRV 235 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRK-FDRQALHATMLRLYHPISGIEMEW 297 H +HI HPLVGD +YGG LR+ DRQALH+ L +HP M + Sbjct: 236 HFSHIGHPLVGDDLYGG---------------LREHIDRQALHSCELTFFHPFFEKTMTF 280 Query: 298 HAPIPQDMVELI 309 HAP+P D+ L+ Sbjct: 281 HAPLPDDIARLL 292 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 161/307 (52%), Gaps = 18/307 (5%) Query: 6 QLTATVSENQLGQRLDQAL-AEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +LT TV+ +Q G ++D L + + R +W+ D +L++G V ++V G+ Sbjct: 6 RLTLTVAPDQSGWKVDALLRGTLGLSGTVIRRVKWLEDG-ILLDG-VRVTVGDRVRAGQI 63 Query: 65 VAIN-AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 +++ + E P PLDIVY+D+D++++NK + VHPG G+ T+ N L+ YY Sbjct: 64 LSVVVGDTEVSGAIVPAPGPLDIVYQDQDVLVLNKAPGVAVHPGPGHYSDTIGNFLMDYY 123 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-G 182 + VHRLD+ T+GL++VA AQ L E L R Y AV G Sbjct: 124 RKQGILADFHPVHRLDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEGAPNPPS 183 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G +D PI R V P G+ AVTHYR + +RL LETGRTHQIRVHMAH Sbjct: 184 GVIDAPIGRLEGSVLARTVRPDGQRAVTHYRTLRTVNDRALVRLELETGRTHQIRVHMAH 243 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HPL GD +YG ++ I R ALHA L HPI+G M + AP+P Sbjct: 244 LGHPLTGDFLYGTE-------DQSLIP------RPALHAAELSFTHPITGKTMAFTAPLP 290 Query: 303 QDMVELI 309 QDM L+ Sbjct: 291 QDMAALV 297 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 159/308 (51%), Gaps = 24/308 (7%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE-----E 73 R+D L + +R+ I++ I V VN + K V IN IE Sbjct: 38 RIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKK-------NYIVKINDVIEIFLPEG 90 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAG 133 + P+++ ++I YEDE +IIINK LVVHPG GN T++N L Y+ ++ Sbjct: 91 KKNIIPENLKINIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKI 150 Query: 134 --IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPIS 190 +VHR+DK T+GL++VAK ++ + I R+Y + G++ GT+ I Sbjct: 151 PILVHRIDKGTSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWGYIKNNKGTIICNIG 210 Query: 191 RHPTKRTHMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 R R +M V P GK ++THY+++E F+ T L+ LETGRTHQIRVH+ +I HP+ Sbjct: 211 RSLKNRIYMNVFPNGIYGKFSITHYKVLERFKYVTLLKCTLETGRTHQIRVHLKYIGHPI 270 Query: 248 VGDPVYGGR--PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 + D YGG + K + FI+ QALHA + HPI + + PIP + Sbjct: 271 LNDKDYGGNHTFKEKKNIKKLFINM----KYQALHAYYIEYIHPIYRKKNYFICPIPDRI 326 Query: 306 VELIEVMR 313 LI+ +R Sbjct: 327 KFLIKNLR 334 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 137/242 (56%), Gaps = 17/242 (7%) Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 ++ E EP +PLDI+YEDE +++INK + P +P G++ N ++ +Y Sbjct: 54 QVSETLLAEP--VPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVR 111 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEP 188 +V RLD+DT+G+M+VAK A + L + + + R Y AV G M GTVD P Sbjct: 112 ATVHLVTRLDRDTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAP 171 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I RHP V P G+ AVTH+ + T + L+LETGRTHQIRVHM+++ HPL Sbjct: 172 IGRHPDSIIERTVTPDGQKAVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLC 231 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD +YGG T ++ RQALH+ L HP++ M +HAP+PQDM +L Sbjct: 232 GDTLYGG--------------TRQEIGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKL 277 Query: 309 IE 310 I+ Sbjct: 278 IK 279 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 22/305 (7%) Query: 19 RLDQALAEMFPD----YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 R+D+ L + F +SR++I+E I ++V VNG+V +G + V I + Sbjct: 13 RIDKILTDYFKTNTTPFSRTKIQELIKQEKVQVNGQVVRANYVSQIG-DHVIIEFPSAKA 71 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH---YYPPIADVPR 131 + P IPL I+YED +++I+KP +LVVHP G+ + T++NALL + + R Sbjct: 72 SELTPLAIPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLARGVQWSTASGEQR 131 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPIS 190 GIVHR+D+ TTG +++AK +L + +Q +++ R Y A+ G + +D PI Sbjct: 132 PGIVHRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRAKIDAPIG 191 Query: 191 RHPTKRTHMAVHPMG-KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 R P R M V K A+T+ ++E F +T + LE+GRTHQIR H+ +I HP+VG Sbjct: 192 RDPNNRKKMVVTAKNSKKALTNIVVIERFNDYTYIECELESGRTHQIRAHLKYINHPIVG 251 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 DP+YG E+F Q LHA LR HP++ + A +PQ+ + + Sbjct: 252 DPLYG----TVADKKESF--------GQYLHAYQLRFIHPVTKESLTITAALPQEFEQRL 299 Query: 310 EVMRA 314 ++RA Sbjct: 300 AILRA 304 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 26/315 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 RLD LA+ SRSRI E I V+VNG V KP K+ G++V I EI Sbjct: 36 SRLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPSHKLDIGDRV-ICGEIVASPPT 94 Query: 78 E--PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----------PP 125 E P++IPLD+V+ED+ ++++NKP +VVHP AG+ G+++NALL + Sbjct: 95 EVAPENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASK 154 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGT 184 + DVPR G+VHR+DK T+GL+V+AK AQ L R + R Y A+ +G G Sbjct: 155 MIDVPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGR 214 Query: 185 VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHF-RVHTRL-RLRLETGRTHQIRVHM 240 +D PI R P R MA+ G+ A++++ + R + L +LETGRTHQIRVH Sbjct: 215 IDAPIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQIRVHA 274 Query: 241 AHITHPLVGDPVYGGRP--------RPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 + HP+VGD YGG R ++ A + K R LHA L HP++G Sbjct: 275 REMGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVTG 334 Query: 293 IEMEWHAPIPQDMVE 307 E+ + P D V+ Sbjct: 335 EEISFAVEPPPDFVD 349 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 161/292 (55%), Gaps = 16/292 (5%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RL+ L E+ SR I++ + R+ VNG + + + V + +EE Sbjct: 20 RLNHYLKEVAQCSSRF-IRKAAREGRIKVNGNNA-RLSYMLTNNDIVELQINRKEEQDII 77 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138 P+ + LDI+YED DII++NKP+ +VVHP + +GT+ N +L+Y+ + +V+RL Sbjct: 78 PEKMDLDIIYEDNDIIVVNKPKGIVVHPTKRHLNGTLSNGVLYYFNDKNENSIVRLVNRL 137 Query: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRT 197 D DT+GL+++AK + L +Q+ + ++Y A+ G+ G +D+PI R Sbjct: 138 DMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSGVIDKPIYRVGEGTL 197 Query: 198 HMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP 257 + G+ ++T ++++E ++ + + L LETGRTHQIRVH++ I HP+ GD +YG Sbjct: 198 KRIIDERGQRSITLFKVIEQYKNASLVELTLETGRTHQIRVHLSSIGHPIYGDSLYG--E 255 Query: 258 RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 P+ DRQALHA L++ HP G ++ + +P+DM LI Sbjct: 256 EEPQ-----------YIDRQALHAYKLQIPHPKDGKILKLESSLPEDMKNLI 296 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/273 (36%), Positives = 153/273 (56%), Gaps = 22/273 (8%) Query: 47 VNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHP 106 V G +C+ + +V G+ I +I + EP+D+PLDI YED+ ++I+NKP +VHP Sbjct: 43 VGGILCNAARTEVRTGD--IITFDIVRPSDIEPEDLPLDIRYEDDYLLIVNKPAGQLVHP 100 Query: 107 GAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV-ESLQRR 165 GT+ NA+L++Y + VHRLD++T+GL+++AK Q +L + + Sbjct: 101 TTKEAHGTLGNAVLYWYKAHGEHHAYHPVHRLDRNTSGLVLIAKVPQVQYKLTPRHGEGK 160 Query: 166 EITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRL 224 REY A+ G +T G +D PI+R V P G+ A THY ++ + + Sbjct: 161 LFHREYLALIEGELTPPEGLIDAPIARALPSIILRKVSPDGQTARTHYDTVQTDGKLSLI 220 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATML 284 L L+TGRTHQIRVH+AH+ HPL+GD +YGG L + RQALHA L Sbjct: 221 HLVLDTGRTHQIRVHLAHLGHPLLGDDLYGG--------------NLARIKRQALHAARL 266 Query: 285 RLYHPISGIEMEWHAPIPQDMVELIEVMRADFE 317 HP++G E++ P+P DM +++ +DF+ Sbjct: 267 HFRHPMTGAEIDVQVPLPSDMAQIV----SDFQ 295 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 165/303 (54%), Gaps = 21/303 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 V EN+ G L+ L +S+ I+ + +LVNG + K + G+ + + Sbjct: 4 VVGENEKGVILENFLRN--KGFSKRLIRIYKWQGEILVNG-IKSNVKRILQPGDVIDLIL 60 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 E ++ P+ + LDI YEDE+I+I+NKP ++VVHP GT+ N + Y+ Sbjct: 61 P-ENDSNIAPEKLDLDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAWYFKEKGLK 119 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 V+RLD+ T+GL+V AK P ++ + + +T+ Y AV G M G +D PI Sbjct: 120 ALIRPVNRLDRGTSGLVVFAKR-PFMQYYLQII--KPMTKLYFAVVEGKMEGEGRIDLPI 176 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 SR P V G A+T+Y++++ + + L++++ETGRTHQIRVH++HI HP+VG Sbjct: 177 SRKPQSGIERMVSEEGDRAITNYKVVKSSKRFSLLKVKIETGRTHQIRVHLSHIGHPIVG 236 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D +Y G+S+ +I RQALHA L HP+ + ++P+PQD+ L+ Sbjct: 237 DTLY--------GSSDDYIK------RQALHAYRLTFVHPLEEKSISVYSPLPQDIQNLL 282 Query: 310 EVM 312 ++ Sbjct: 283 KLF 285 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 165/305 (54%), Gaps = 35/305 (11%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 ++E+ +G+RLD ++E + +RS++K ++ ++VN ++K+ ++ N Sbjct: 35 ITEDDIGKRLDTFISEKL-NITRSQVKNYL--TSIIVND-----AEKKLSYSLKLNDNII 86 Query: 71 IEEEARFE---------PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 I+ + F+ P++I LDI+YED+ +++INKP + VH GT++NALL+ Sbjct: 87 IDSDNIFKEKTDTANPIPENIDLDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLY 146 Query: 122 Y---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + + + RAGI+HRLDKDT+GLM++ K + + E + R I + Y A+ +G Sbjct: 147 KIKDFDFVGNKERAGIIHRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGV 206 Query: 179 MTAGGT-VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + ++ PI RH R M V GK A+TH ++++ F HT + + L+TGRTHQIR Sbjct: 207 LKDNYIEINLPIGRHHVYRKKMTVREDGKEALTHIKVLKRFNSHTLIEINLKTGRTHQIR 266 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH ++ P+ GD +Y S++F K+ L A + HPI+ +++ Sbjct: 267 VHSSYKGFPVAGDKIY----------SKSF----SKYSGLMLVAKKIEFMHPITKELLDF 312 Query: 298 HAPIP 302 P Sbjct: 313 EIDYP 317 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/267 (35%), Positives = 150/267 (56%), Gaps = 17/267 (6%) Query: 44 RVLVNGKVCDKPKEKVLGGEQVAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDL 102 ++LVN K + + G++V + E + P+ IPLDI YED+ +++INKP+ + Sbjct: 65 KILVNQKEV-TVRTTIFSGDRVEVYVPPEPKNESLRPECIPLDIHYEDDHLLVINKPQGM 123 Query: 103 VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 162 P +P T+ NA++ YY V+RLD+DT+GL+VVAK A +L + Sbjct: 124 PTIPSREHPSRTLANAVMGYYESHHIPFTFHAVNRLDRDTSGLLVVAKHGLAHDQLSKGQ 183 Query: 163 QRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH 221 + ++ R Y A+A G + GT+ PI R P+ V G+ A+THY+++ + + Sbjct: 184 RAGKLKRYYLALAEGFVQPREGTIHAPIKRRPSSIIERMVAADGQEAITHYKVINDNQAY 243 Query: 222 TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHA 281 + + + LETGRTHQIRVH AH+ HPL+GD +YGG ++ RQALH Sbjct: 244 SEVEINLETGRTHQIRVHFAHLGHPLLGDDLYGG--------------SIELLARQALHC 289 Query: 282 TMLRLYHPISGIEMEWHAPIPQDMVEL 308 + L HP +G + + AP+P+D++E+ Sbjct: 290 QRVELIHPFTGKHLHFSAPLPKDLIEV 316 >UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium thermophilum RepID=Q67N67_SYMTH Length = 327 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/328 (34%), Positives = 165/328 (50%), Gaps = 48/328 (14%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + G RL Q L + SR+ ++ +LV+G+ VL G +V + Sbjct: 5 VDPSARGLRLSQYLFDRL-KLSRTVVRRAKTSGGILVDGRPART--SLVLAGGEV-VEVR 60 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 + +E R EP+ IP+ +VYED +++++KP +VVHP GT+ NA+ H+ P Sbjct: 61 VAQEGRVEPEPIPIQVVYEDPWLLVVDKPAGMVVHPVRDYVSGTLANAVAHHLLRSGSDP 120 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY-EAVAIGHMTAGGTVDEPI 189 A V R+D++T+GL++ AK L L+R+++ R Y V GTVD PI Sbjct: 121 VARPVQRIDRETSGLVLFAKDPAVAGLLARELERQKLERRYVAVVEGAVAADAGTVDRPI 180 Query: 190 SR---HPTKRTHMAVHP-------------------------MGKPAVTHYRIMEHFRVH 221 R HP R +A P G+PAVTH+R++ + Sbjct: 181 RRVWGHPVAR-EVAEGPRTPEQERLLAEAAAQGRALREDWTAAGQPAVTHWRVLRRWPAA 239 Query: 222 TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHA 281 T L LRLETGRTHQIRVHMA++ HPL+GD +YGG S I RQALHA Sbjct: 240 TMLELRLETGRTHQIRVHMAYLGHPLLGDELYGG--------SRTLI------QRQALHA 285 Query: 282 TMLRLYHPISGIEMEWHAPIPQDMVELI 309 L HP++ + + AP+P D+ +L+ Sbjct: 286 ATLAFVHPVTREPVRFTAPLPADLEDLV 313 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 162/335 (48%), Gaps = 37/335 (11%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G R+D+ L +P+ SR++I+ I + VNG K V G+++ + + Sbjct: 8 GPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKK-SYGVEPGDEIVFRLIRKPPMQ 66 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY-------------- 122 EP+ IPLD+V+E +D++++NKP +VVHP G+ GT+++ALLH+ Sbjct: 67 AEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDERDE 126 Query: 123 -------------YPPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 167 P D P R GIVHRLDK T+GL+VVAK A L E + + Sbjct: 127 VSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKAHTV 186 Query: 168 TREYEAVAIGHMT-AGGTVDEPISRHPTKRTHMAVHPM--GKPAVTHYRIMEHFRVHTRL 224 R Y A+ G + GT++ I R P R MAV P GK A THY +E + + Sbjct: 187 DRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVETHAHTSVV 246 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGG---RPRPPKGASEAFISTL-RKFDRQALH 280 LETGRTHQIRVH HPL+GDP YGG R G F L ALH Sbjct: 247 EFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPHPALH 306 Query: 281 ATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 A L HP + + + A P ++ +R + Sbjct: 307 AYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQE 341 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/310 (31%), Positives = 163/310 (52%), Gaps = 19/310 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L +SEN+ + L L S I++ L Q++ VN ++ V +++ Sbjct: 3 LERIISENEARKTLKHVLKNGL-KLSERLIRKLKLQQKIYVNEH-PERVNYIVKADDRLK 60 Query: 67 INAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + ++EEE EPQDIPLD++YEDE ++++NK +VVHP + +PD T+ N +++Y Sbjct: 61 VILDLEEECEHIEPQDIPLDVIYEDECMLVLNKQSGIVVHPTSYHPDNTIANGIVYYLKQ 120 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGT 184 + V RLD++T+G+++ AK Q L++ + +EY + G GT Sbjct: 121 KGVTKKVRPVSRLDRETSGIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGIPQNNEGT 180 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTR--LRLRLETGRTHQIRVHMAH 242 ++ PI+R P + G P++THY+I++ F H L +LETGRTHQIRVH Sbjct: 181 INLPIARKPGSIMLRHISEEGAPSITHYKILKTFPSHNSALLSFKLETGRTHQIRVHCKA 240 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + P+ GD +Y + FIS RQALH+ + HP++ + + A +P Sbjct: 241 MGFPIYGDTLYSDN-------TNLFIS------RQALHSYRTEIIHPVTLKGVIFKAELP 287 Query: 303 QDMVELIEVM 312 D+ L+E++ Sbjct: 288 SDISGLLEIL 297 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 147/267 (55%), Gaps = 16/267 (5%) Query: 43 QRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDL 102 +R+L+NG+ K E + G+ + I+ EE ++FEPQ+IP ++VYED D+I+INK + Sbjct: 47 KRILINGQYA-KYHELLSEGDWIKIDM-TEEASQFEPQEIPFNVVYEDIDVIVINKEPGI 104 Query: 103 VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 162 V HP +P T+ NA +Y R V+RLD DT+GL+V+AK + + + Sbjct: 105 VSHPTKSHPKDTIANAAQNYLEKKGVACRIRFVNRLDMDTSGLLVIAKNPYTHHIMSQQM 164 Query: 163 QRREITREYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH 221 + EIT++Y A G + A G +D I R + V G+ ++T + ++E + Sbjct: 165 KANEITKKYVAFVKGVVVANEGEIDGAIYRSSDETIKRVVDDRGQQSLTKFTVLERYADA 224 Query: 222 TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHA 281 T L + L TGRTHQIRVHM I HP++GD +YG ++ T RQALHA Sbjct: 225 TMLEVSLLTGRTHQIRVHMESIGHPMLGDHLYG------------YVDT-ELIRRQALHA 271 Query: 282 TMLRLYHPISGIEMEWHAPIPQDMVEL 308 + L P ++E A +P+D+ EL Sbjct: 272 SYLSFLQPRYKEKIEVRASLPKDLNEL 298 >UniRef50_P70870 Ribosomal large subunit pseudouridine synthase D n=23 Tax=Borrelia RepID=RLUD_BORBU Length = 326 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/263 (35%), Positives = 151/263 (57%), Gaps = 16/263 (6%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCD-KPKEKVLGG 62 RV+ TV EN L RLD L+ F ++RS+IK ++ NGK K + V Sbjct: 3 RVKREFTVKENAL--RLDLYLSGNFEVFTRSQIKRRNVEAFKKSNGKFLKIKLSKPVFKD 60 Query: 63 EQVAINAEIEEEAR----FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 +++ I E +EE+ P +IP+ I+YED ++I++NKP+ ++ HPG + D TV+N Sbjct: 61 DEILI--EFDEESSQIDCLRPSNIPIAIIYEDSNVIVLNKPQGILSHPGISHWDDTVVNF 118 Query: 119 LLHYYPPIA-----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 173 LL++ + + R GIVHRLDKDT+G+++ AK + L + + + + Y A Sbjct: 119 LLYHIKSLKINFNEEKIRPGIVHRLDKDTSGVLICAKNISTLRFLAQQFKDKRTNKVYIA 178 Query: 174 VAIGHMTAG-GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETG 231 + G+ + G+++ I R R +V GK A+T YR++ +F ++ L L+ +TG Sbjct: 179 IVKGNFNSFFGSIESFIDRDKHNRKKFSVSKDRGKKALTEYRLLLNFGEYSLLALKPKTG 238 Query: 232 RTHQIRVHMAHITHPLVGDPVYG 254 RTHQ+RVHM ++ P++GD VYG Sbjct: 239 RTHQLRVHMKYLNFPILGDEVYG 261 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 158/283 (55%), Gaps = 18/283 (6%) Query: 32 SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDE 91 S +++++ +VL+NG + V G++++I + +++ P +PL IVYED+ Sbjct: 25 SLTQLRKIKRQGQVLINGHPVKSFQTPVSSGDEISI--DYGDDSCLTPMKMPLHIVYEDD 82 Query: 92 DIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKT 151 ++I+NKP L+VHP + + T+ + +L+Y + +HRLD++T+GL+ +AK Sbjct: 83 FLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGAFHPIHRLDRNTSGLVAIAKH 142 Query: 152 VPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVT 210 P + + + R Y AV G ++ G +D PI RHP V G+PA+T Sbjct: 143 -PHIQHALSGGGAKGLKRLYLAVVTGIPSSLMGRIDAPIGRHPNSIIKRVVRSDGQPAIT 201 Query: 211 HYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFIST 270 YR++ F + + + L L TGRTHQIRVH++HI HPL+GD +YG GA++ Sbjct: 202 LYRVLSTFSMASLVELELLTGRTHQIRVHLSHIGHPLLGDDLYG-------GATDL---- 250 Query: 271 LRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 RQALHA L HP + + +P+P D+ +LI+++R Sbjct: 251 ---IRRQALHAASLSFRHPATDKVLTLTSPLPPDLADLIQLLR 290 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 147/280 (52%), Gaps = 16/280 (5%) Query: 31 YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYED 90 +SR I+ +RV VNG + GE +++ + E +++PL+I+YED Sbjct: 31 FSRKLIQHLKQGERVWVNGAFTFL-TTRGKAGETLSVQLQPPEINSIPGENLPLEILYED 89 Query: 91 EDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAK 150 + I INKP VVHP P GT+ NA++ Y+ + +HR+D++T+G++V+ K Sbjct: 90 DYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPFRPIHRIDRNTSGVVVIGK 149 Query: 151 TVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPTKRTHMAVHPMGKPAV 209 A ++ I + Y + G M GT+ PI+ P + P G PAV Sbjct: 150 NQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPIALAPDSFIQRQISPEGSPAV 209 Query: 210 THYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFIS 269 T Y+++E ++ + L LETGRTHQIRVH H+ HPL+GD +YGG Sbjct: 210 TLYKVLERYQDASLLEFILETGRTHQIRVHCQHLGHPLLGDDLYGG-------------- 255 Query: 270 TLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 L + +RQALH+++ HP++G AP+P+D+ L+ Sbjct: 256 NLARINRQALHSSIYEFNHPLTGELTTIQAPLPEDLQRLL 295 >UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veillonellaceae RepID=D2RJC8_ACIFE Length = 294 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 144/266 (54%), Gaps = 19/266 (7%) Query: 45 VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVV 104 + VNG P ++ G+++ EE+A P +PL ++YEDED+++++KP +++ Sbjct: 40 ITVNGSPVSSPSHRLEAGDRLVFR--WEEKAAVIPVHLPLSLLYEDEDLLVVDKPAGMLI 97 Query: 105 HPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQR 164 HP T++ A+ Y+ ++RLD+DTTG+++VAK+ A+ L Sbjct: 98 HPTWSGARDTLVQAVGGYFRRTGQHCGIHPLYRLDRDTTGVLMVAKSAFAKHALTRD--H 155 Query: 165 REITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTR 223 +I REY AV G G ++ PI R V P G+PAVT YRI+E + T Sbjct: 156 SQIYREYLAVCEGRWGIPQGRIEHPIGRVAEGVDRWTVRPDGRPAVTEYRILEENQEWTV 215 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATM 283 L++ L TGRTHQIRVH AH HPLVGDP+YG + + RQALHA Sbjct: 216 LKIHLLTGRTHQIRVHFAHEGHPLVGDPLYGTKD--------------GRIARQALHAWT 261 Query: 284 LRLYHPISGIEMEWHAPIPQDMVELI 309 +R HP +G E+ AP+P DM L+ Sbjct: 262 VRFRHPRTGEEILLTAPMPGDMEGLL 287 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 153/295 (51%), Gaps = 21/295 (7%) Query: 17 GQRLDQALAEMFPDYSR--SRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 G+ L + L SR +R+K + + VNG+ K E + G+++ I E +E Sbjct: 22 GKELKKILKNKLDFSSRLLARVKR---GKTIFVNGEYL-KYHETINAGDEIKIVME-DEP 76 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI 134 F QD+P + VYED D+I++NK +V HP +PD T+ N Y + Sbjct: 77 NHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSKGIDCKVRF 136 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHP 193 V+RLD DT+GL+++AK A L E +Q I ++Y A G + G ++ PI R Sbjct: 137 VNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAPIYRTT 196 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 V G+ ++T ++++E ++ T + ++L TGRTHQIRVHM H+ HPL+GD +Y Sbjct: 197 MDSIKRVVDERGQESITEFKVLERYKNATMVEVKLLTGRTHQIRVHMEHLGHPLIGDTLY 256 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 G K +E DRQALHA LR + P +E A +P D++ L Sbjct: 257 G------KEDAEL-------IDRQALHAEYLRFWQPRFKRAIEVKADLPADLLSL 298 >UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBV3_SORC5 Length = 345 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 115/311 (36%), Positives = 157/311 (50%), Gaps = 39/311 (12%) Query: 32 SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQ----DIPLDIV 87 SR+ ++ WI RVLV+G+ P + A+ EE P D+ + +V Sbjct: 39 SRAAVQRWIAAGRVLVDGE----PARASVAVRASALVEVRPEEPSPSPTAAEPDVVIPVV 94 Query: 88 YEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP----------RAGIVHR 137 YEDE +++I+KP LVVHP G+ GT++N LL P A P R GIVHR Sbjct: 95 YEDEHLLVIDKPAGLVVHPARGHASGTLVNGLL-ALPGFALAPADPRDPMGHVRPGIVHR 153 Query: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKR- 196 LD+ T+GL+VVAK P + L + R I REY A+ G T D RHPT R Sbjct: 154 LDRGTSGLLVVAKDEPTREALKDRFARHAIEREYAAIVAGEAR-DATYDTLHGRHPTDRL 212 Query: 197 --THMAVHPMGKP---------AVTHYRIMEHFR-VHTRLRLRLETGRTHQIRVHMAHIT 244 T G P AVTH R++E T + LETGRTHQIRVH+A Sbjct: 213 RFTSWIRGGAGAPGSHVAAPRRAVTHVRVIERLGDAATVVACSLETGRTHQIRVHLAERG 272 Query: 245 H-PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GDP+YG P+ P A + + RQALHA +L HP + + W + +P Sbjct: 273 RTPVLGDPLYGKPPKKP-----AVRAIAEELGRQALHARVLGFIHPATQKPVRWESALPA 327 Query: 304 DMVELIEVMRA 314 DM + ++ +RA Sbjct: 328 DMRKALDQLRA 338 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 136/243 (55%), Gaps = 14/243 (5%) Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR 131 EE P+ + LD++YED+DI++INKP+ +VVHP + +GT+ N +L+Y+ + Sbjct: 71 EENQDIVPEKMHLDVIYEDKDIVVINKPKGIVVHPTKRHQNGTLSNGVLYYFKEKNENSI 130 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPIS 190 +V+RLD DT+GL+++AK + L +Q+ + + Y A+ G++ G +++PI Sbjct: 131 VRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHGNLKEKSGVINKPIY 190 Query: 191 RHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 R + G+ +VT ++++E + + L LETGRTHQIRVH++ I HP+ GD Sbjct: 191 RVGEGTLRRVIDERGQRSVTRFKVVESYEDADLVELTLETGRTHQIRVHLSSIGHPIYGD 250 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 +YG DRQALHA L++ HP G ++ + +P DM LI Sbjct: 251 SLYGKEEHEY-------------IDRQALHAYKLQIPHPKDGRILKLESDLPDDMKNLIS 297 Query: 311 VMR 313 ++ Sbjct: 298 KLK 300 >UniRef50_C7RGL6 Pseudouridine synthase, RluA family n=3 Tax=Anaerococcus RepID=C7RGL6_ANAPD Length = 305 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 142/242 (58%), Gaps = 7/242 (2%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 R+D+ +++ + R +IK++I D+++ VN KP K+ G+++ I+ + + Sbjct: 10 RIDKFISDELEEIPREKIKDFIKDKKIKVNNSFV-KPSFKLSEGDEIEIDDSLFHVPELK 68 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-----PPIADVPRAG 133 +D+ L IVYE++D II+K +++VHP GT++N LL Y I R G Sbjct: 69 AEDMELKIVYENDDYAIIDKDSNVIVHPAGKIITGTLVNGLLGRYGYDGLSHIGGDDRPG 128 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRH 192 IVHRLDKDTTGL+ + KT A + + R++ + Y A+ G+ GT+D + R Sbjct: 129 IVHRLDKDTTGLIAITKTNEAYKYFKKMFETRKVDKYYYAIVFGNFDKKKGTIDNFMDRD 188 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 R MAV G+ AV+HY ++ + +R+++ETGRTHQIRVHM HI HP++GDPV Sbjct: 189 VHNRRKMAVRNTGRRAVSHYEVISEVEGFSLVRIKIETGRTHQIRVHMTHINHPILGDPV 248 Query: 253 YG 254 YG Sbjct: 249 YG 250 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 156 bits (395), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 93/229 (40%), Positives = 127/229 (55%), Gaps = 15/229 (6%) Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137 +P I L I++EDE +IIINKP L P + ++ A+L YY V R Sbjct: 77 KPYKIKLHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGAILAYYIENGIPSTFHAVSR 136 Query: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHPTKR 196 LD+DT+GL++VAK V+ + EI R Y A+ G ++ T+D PISR T Sbjct: 137 LDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILSDDYNTIDLPISRKTTSI 196 Query: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256 V+ GK A+THY +++ + T L+L LETGRTHQIRVHM+ I HPL+GD +YGG Sbjct: 197 IEREVNEFGKSAITHYEVLKRYSGATLLQLTLETGRTHQIRVHMSAIGHPLLGDTLYGG- 255 Query: 257 PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 +R DRQALH+ L +HPI+ E +H PIP D+ Sbjct: 256 -------------DVRYIDRQALHSHQLSFFHPINKREYTFHCPIPDDI 291 >UniRef50_C4ZAQ6 Pseudouridine synthase n=15 Tax=Clostridiales RepID=C4ZAQ6_EUBR3 Length = 295 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 157/304 (51%), Gaps = 22/304 (7%) Query: 11 VSENQLGQRLDQALAEM-FPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN- 68 ++EN G+ ++ L E + R+K+ D +L NG + E++ + + + Sbjct: 9 INENDTGKTVEGFLKEHGYTHQVLVRLKQ--TDHGILRNG-IWAYTNERLCKDDLITVQI 65 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 E E P ++PLDI YED+DII+INKP D+ HP AGN D T+ NAL++YY Sbjct: 66 VENECSDNIAPVNLPLDIAYEDDDIIVINKPFDMPAHPSAGNHDNTLANALMYYYGSQNK 125 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188 ++RLD+DTTGL +VAK A L ++ +R I R Y AV G A + P Sbjct: 126 PFVYRCINRLDRDTTGLTIVAKHALAGGILGNAVAKRAIHRTYYAVCSGCTPACMRISAP 185 Query: 189 ISRHPTKRTHMAV-HPMGKPAVTHY-RIMEHFRVHTRL-RLRLETGRTHQIRVHMAHITH 245 I+R V G+ AVT + RI + + L +LRL TGRTHQIRVHM +I Sbjct: 186 IARKDASTIERCVDFKRGEYAVTDFIRIKYNPDNNLSLVKLRLLTGRTHQIRVHMKYIGF 245 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +Y +IS RQALH+ L HP++G +M + IP DM Sbjct: 246 PLIGDFLY--------NPDYTYIS------RQALHSGRLVFTHPVTGQKMNLISDIPSDM 291 Query: 306 VELI 309 L Sbjct: 292 KSLF 295 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 166/338 (49%), Gaps = 56/338 (16%) Query: 18 QRLDQALAEMFPDYS--RSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE--- 72 RLD +A PD S R R+ I + V +NGK KP + G+ I E+E Sbjct: 1 SRLDAYVAANVPDASASRGRVAAAIKARMVTLNGKTASKPSRALKPGD--VIEGELERER 58 Query: 73 -EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL-HYYPPIADVP 130 EA+ EP + LDIV+EDE ++++NK +V HP AG+ GT++NA+L H P VP Sbjct: 59 ASEAKPEPW-VKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVP 117 Query: 131 ----------------------------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 162 R GIVHRLDK T+G+MVVAK A L E Sbjct: 118 TGNQALSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQF 177 Query: 163 QRREITREYEAVAIGHMT-AGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRV 220 R + R+Y A+ G + + G ++ PI R P R MAV G+ A ++Y ++ Sbjct: 178 AARVVRRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVTQGGGRFAASNYEVIATLAN 237 Query: 221 H--TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-----------SEAF 267 + + RLETGRTHQIRVH HI HP++GD YGG A ++A Sbjct: 238 GNASLVEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKAL 297 Query: 268 ISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 +ST+ DR LHA L HP SG +++ P+D Sbjct: 298 MSTI---DRPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bifidobacteriaceae RepID=B7GQ28_BIFLI Length = 320 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 153/304 (50%), Gaps = 17/304 (5%) Query: 16 LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA 75 +G+R D A+A+M SRS+ + + + V G+ + + GE V + EE+A Sbjct: 12 VGKRFDVAVAKML-GISRSKAADLVDSGQARVLGREVAR-SSTLQAGETVEFDLA-EEQA 68 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD---VPRA 132 EP + +VYED+D+I+++KP + H G TVL +L IA R Sbjct: 69 GPEPIATDMAVVYEDDDVIVVDKPVGVAAHASVGWTGPTVLGSLRDRGVHIASYGAAGRE 128 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISR 191 GIV RLD T+GLM+V K+ A T + E+ + Y A+ G + T++ PI R Sbjct: 129 GIVSRLDVGTSGLMLVCKSDLAYTEMRRQFAEHEVKKTYHALVQGGLKENKATIEAPIGR 188 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 V P GKPAVTH+ ++E F T + + LETGRTHQIRVH + I HPL GD Sbjct: 189 AKVSDFRFCVTPAGKPAVTHWDVLERFGHEATLVSVNLETGRTHQIRVHFSSIGHPLCGD 248 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 P+YG P +S DRQ LHA L HP + + + P D+ ++ Sbjct: 249 PMYGANP---------VLSEALGLDRQWLHAMKLEFRHPRTRVWTTVRSQYPADLAAALD 299 Query: 311 VMRA 314 MRA Sbjct: 300 AMRA 303 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/279 (31%), Positives = 152/279 (54%), Gaps = 16/279 (5%) Query: 32 SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDE 91 SR I++ + R+ +N + + K+ G+ + N +E+ ++P + LDI+YED Sbjct: 41 SRKFIRKMGREYRIRLNCRYVKFTEVKLNSGDLIEFNLNFKEKTYYDPAPLDLDIIYEDR 100 Query: 92 DIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKT 151 +++INKP +++VHP T++N +L++ + +HRLD++TTGL+++AK Sbjct: 101 HLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQGNYNLVRPIHRLDRNTTGLLLIAKN 160 Query: 152 VPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDEPISRHPTKRTHMAV-HPMGKPAV 209 A + Q I REY A G++ +++ PI + V H +GK AV Sbjct: 161 QYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESINAPIGKTRDSLIKRKVDHTLGKRAV 220 Query: 210 THYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFIS 269 TH ++++ + + +R++LETGRTHQIRVH++H+ HPL+GD +YGG + I Sbjct: 221 THIKVVKPGGLISLIRVKLETGRTHQIRVHLSHLGHPLLGDTLYGG--------EDILIK 272 Query: 270 TLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 R ALH+ + P E+ + AP+P DM +L Sbjct: 273 ------RPALHSYKVTCCLPFKHKEVTFKAPLPVDMEKL 305 >UniRef50_A6GHA7 Pseudouridine synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHA7_9DELT Length = 324 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 153/316 (48%), Gaps = 23/316 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFP------DYSRSRIKEWILDQRVLVNGKVCDKPKEK 58 + +T + E+ +GQRLD+AL + F SRS++ V + G+ Sbjct: 1 MSVTLVLGEDAIGQRLDKALVDAFARSEAHESLSRSQLARAFAAGEVRIAGRKVKASFRL 60 Query: 59 VLGGEQVAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G V + A P+ IPL +V+ED +++++KP +VVH G G+ GT++N Sbjct: 61 EAAGVCVELRVPAPAPLAHARPEAIPLTVVHEDASLLVLDKPAGMVVHAGPGHDSGTLVN 120 Query: 118 ALLHYYPPIADV---------PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 A+LH+ AD R G+VHRLDKDT+GL+V A+ + AQT L E + I Sbjct: 121 AVLHHLQVHADALPVLPGNGPERPGVVHRLDKDTSGLIVFARGLRAQTVLAEQFRDHSID 180 Query: 169 REYEAVAIGHMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRL-RL 226 R Y V +G + ++ R P R A + AVT ++ H L R Sbjct: 181 RAYLGVVLGRPSFERRRLETTHGRDPADRRRFAPDQGTRRAVTTMEVLRPLGAHAALARF 240 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL 286 LETGRTHQIR+H + HP+ DP+YG RP+ P A R ALHA +L Sbjct: 241 TLETGRTHQIRMHARMVGHPIFADPLYGRRPKHP-----ALRRLADGLGRHALHAALLGF 295 Query: 287 YHPISGIEMEWHAPIP 302 HP + AP+P Sbjct: 296 AHPDGSGRLVLEAPLP 311 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 124/228 (54%), Gaps = 17/228 (7%) Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138 P +IP ++YEDEDI+++NKP D+ VHP GN T+ N + Y + ++RL Sbjct: 78 PLNIP--VLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVAAYLETKGESCPFRCINRL 135 Query: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTH 198 D+DT+G +++AK + L ++ R+I+R Y AV G GT+ PISR Sbjct: 136 DRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQSGTISAPISRAADSVIE 195 Query: 199 MAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP 257 + G+ A+THY+++E H+ L + LETGRTHQIRVHM +I HPL D +Y Sbjct: 196 RRIDFENGESAITHYQLLEVKNNHSLLEIHLETGRTHQIRVHMGYIGHPLPADYLYN--- 252 Query: 258 RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 F RQ LH+ L+ HPI+G M AP+P+DM Sbjct: 253 -----------PVYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVPEDM 289 >UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Methanococcus RepID=A4FXG9_METM5 Length = 298 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 25/316 (7%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGK-VCDKPKEKVL 60 +Q+ L T+ G +L L + F + S IK++ ++++ VN K + K K K Sbjct: 3 SQKKILKVTIDSKIAGNKLIDVLKDDF-ELSNKMIKKFDKEKKIFVNSKNISLKSKLKEN 61 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 V I+ I +P+ + L ++YED+D++I++KP+++VVHP GT+ NA+ Sbjct: 62 ETVSVEIDCGIN---NIDPEKLLLCVIYEDDDLLIVDKPKNMVVHPTKNVLSGTLANAIS 118 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 ++ + V+RLD DTTGL+++AK + +L + + + + Y V GH+ Sbjct: 119 NHQKINNQNYKIRFVNRLDMDTTGLLIIAKNSYSHQQLAKQMDEGILEKIYIVVVNGHLD 178 Query: 181 AG-GTVDEPISRHP--TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + G +++ I + KR + GK + T Y+++E F + L ++L TGRTHQIR Sbjct: 179 SKEGVIEDSIDLNDDGIKR---ELSTFGKISKTKYKVIEEFNNVSVLEIKLLTGRTHQIR 235 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH++ + ++GD +YG T +RQALH+ +LR HPI+ ME Sbjct: 236 VHLSSFGNNIIGDTLYG--------------KTADLIERQALHSHILRFIHPITKENMEI 281 Query: 298 HAPIPQDMVELIEVMR 313 + +P DM LI+ ++ Sbjct: 282 RSKLPDDMENLIKNLK 297 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/271 (37%), Positives = 148/271 (54%), Gaps = 27/271 (9%) Query: 56 KEKVLGGEQVA--INAEIEEEARF---EPQDIPLD-------IVYEDEDIIIINKPRDLV 103 KE +L GE VA + + +E R +P+ + LD I+YED+ ++I+NKP L+ Sbjct: 46 KEVLLDGEPVAQHVVGKAGQEIRLRMCKPEALGLDPASEAPEILYEDDHLLIVNKPVGLL 105 Query: 104 VHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 163 +HP T+ + + ++ + VHRLD+DT+G+++ AK A L E L+ Sbjct: 106 LHPTERYHHVTLDHLVSGHFFRTGLEAKVRHVHRLDQDTSGVVLYAKHPWASALLDEMLR 165 Query: 164 RREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHT 222 R I R Y A G M G ++EPI + T V P G PA+THY++ E F+ T Sbjct: 166 ERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRRRVTPNGDPAITHYQVKERFQTAT 225 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT 282 ++ +LETGRTHQIRVH +HI HPL+GD +YGG+ K RQALHA Sbjct: 226 KVECQLETGRTHQIRVHFSHIGHPLLGDELYGGKRELIK--------------RQALHAA 271 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 +L+ HP G +E AP+P D+ L + +R Sbjct: 272 VLKFEHPFGGEVIEVTAPLPLDLFHLEKKLR 302 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q+ V +Q G+ L L D S +K+ + +L NG + V G++V Sbjct: 7 QVVLCVEASQNGKFLRDFLKH--KDISDRALKKLRNEGEILCNGAKVTW-RTIVNTGDKV 63 Query: 66 AINAEIEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + I ++ P+ + L I+ EDEDI ++NK + VHP P GT+ N L++++ Sbjct: 64 VLIYPIPPRNQYLPPEPLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLVYHWL 123 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GG 183 P V+R+D++T+GL++VAK + +L +R+++ R Y A+ G + G Sbjct: 124 ENNPAPTFHAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNG 183 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D P+ + K T + G+ A+T + ++++ T +RL ETGRTHQIRVH++H+ Sbjct: 184 YIDLPLEKCEGKTTKRQISSTGQQALTRFEVLQYITDCTLIRLMPETGRTHQIRVHLSHL 243 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +YGG ++ + R LHA + HP +G M + P+ + Sbjct: 244 GHPLVGDTLYGG--------------SIAQIGRHCLHADKISFLHPRTGHPMSFQIPLAE 289 Query: 304 DMVELIEVM 312 DM+++I M Sbjct: 290 DMLQVITEM 298 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 159/316 (50%), Gaps = 18/316 (5%) Query: 8 TATVSENQL-GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 T + E+ L G R+D+ L+ F +YS R++ + VNG D P ++V G+Q+ Sbjct: 7 TDLIVEDYLDGARIDRFLSRHFRNYSTHRLQRIVQAGFAKVNGIPAD-PLQRVFRGQQIN 65 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY--- 123 I + ++P+ +PL+++YED +II+NKP ++ HP GTV NAL +Y Sbjct: 66 IRLPEPPDKTYDPEPLPLEVLYEDAWLIIVNKPPGMIAHPAGNILSGTVANALQYYLDQQ 125 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 + + R GIVHRLD+ T+G+++VAK L Q+ +++ Y A+ Sbjct: 126 TGVRSLLRPGIVHRLDQFTSGILIVAKEHLGHRSLSIQFQQNRVSKSYLAIVRDQPKQDL 185 Query: 183 GTVDEPISRHPTKR-THMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 ++ I HPT+ M HP K A T + ++E H+ +R +TGR HQIRV Sbjct: 186 FENNDAIGEHPTQAGVCMTTHPEALRAKAAFTRFEVVERLPGHSLIRAFPKTGRLHQIRV 245 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H+A + P++ D YG R + RQALHA + HP++ + M Sbjct: 246 HLADLGFPIIADDFYGNDAR--------LLDDRELISRQALHAEQIEFSHPVTSLRMNIS 297 Query: 299 APIPQDMVELIEVMRA 314 A +P D ++ +R+ Sbjct: 298 AGVPADFQLALQRIRS 313 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 15/225 (6%) Query: 84 LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTT 143 L+I+YEDEDI++INKP D+ VHP AGN + T+ N + Y+ + ++RLD+DTT Sbjct: 81 LNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFAEKGEDFVYRCINRLDRDTT 140 Query: 144 GLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISR-HPTKRTHMAVH 202 G +++AK + L +++R+I R Y A+ G + GT++ PI+R + T Sbjct: 141 GALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGTINAPIARMEGSVITREVNF 200 Query: 203 PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG 262 G+ A+THY + + ++ L LETGRTHQIRVHM +I HPL GD +Y Sbjct: 201 GTGESAITHYERLAAGKEYSLAELHLETGRTHQIRVHMKYIGHPLPGDYLYN-------- 252 Query: 263 ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 R+ +RQ LH+ L HP +G M + AP+P D + Sbjct: 253 ------PDYRRINRQPLHSYQLEFTHPTTGKVMLFTAPLPIDFIS 291 >UniRef50_B9YDX4 Pseudouridine synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDX4_9FIRM Length = 295 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 150/281 (53%), Gaps = 22/281 (7%) Query: 22 QALAEMFPDYSRSRIKEWILD--QRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEP 79 Q +AE+ + S+ + L+ Q++ +NG+ + KV G+++A+ +EE+ F P Sbjct: 21 QTIAELLAPWGCSKAARYKLEIEQKITLNGQPV-RQSAKVKVGDELALKVFQQEESDFVP 79 Query: 80 QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLD 139 IP+ I+YEDE I+ ++KP ++VHP GT+ NA+ YY +HRLD Sbjct: 80 WAIPVRILYEDELILAVSKPAGMIVHPDNKGKTGTLANAVAAYYLRTGQHCTVRPIHRLD 139 Query: 140 KDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG--TVDEPISRHPTKRT 197 + T+G+++ +K Q +L ++L +++I R Y AV G M T+D+PI R Sbjct: 140 EGTSGIVLFSKCPFFQPKLDQALAQKQIARTYLAVVSGVMKPKDRLTLDKPIGRDRHNAK 199 Query: 198 HMAVHPMGKPAVTHYRIM--EHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 + P GKPAVTH ++ T +R +LETGRTHQIRVH+A I P+V DP+Y Sbjct: 200 AYRISPTGKPAVTHVEVLRCRQKEKQTLVRCQLETGRTHQIRVHLASIQRPVVNDPLYN- 258 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 PRP +G R LHA +SG ++E Sbjct: 259 -PRPVQG-------------RMKLHAWKCAWTDLVSGRQVE 285 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 145/274 (52%), Gaps = 8/274 (2%) Query: 47 VNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHP 106 ++G+ C KP K+ GEQ+ + ++ LDI+Y+D+ I +INKP ++ HP Sbjct: 3 IDGEPC-KPAHKLSAGEQLIVKPIAAYSDEQIGVNVHLDIIYQDDRIAVINKPAGMITHP 61 Query: 107 GAGNPDGTVLNALLHYYPPIADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ 163 G+ GT+ L +P ++ + R GIVHRLD+DT+G++V+AK A L Q Sbjct: 62 AKGHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLDRDTSGVIVIAKDDAAHEFLKTQFQ 121 Query: 164 RREITREYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVH---PMGKPAVTHYRIMEHFR 219 R +EY A+ IG ++EP+ HP R MA+ GK A T Y ++E ++ Sbjct: 122 DRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRERMAIRRGDDEGKDAQTFYEVLERYQ 181 Query: 220 VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQAL 279 ++ +TGRTHQIRVH+ H HP++ DP+YG R G + +R AL Sbjct: 182 GFAAIKALPKTGRTHQIRVHLMHAGHPVLCDPLYGSRRFLSLGELQHDDDRTVLLNRTAL 241 Query: 280 HATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 HA + + HP G E+ AP+P D+ ++R Sbjct: 242 HAHRIAIAHPDDGEIREFIAPLPADLERTQNMLR 275 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 177/334 (52%), Gaps = 43/334 (12%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKP--KEK 58 M+++ + TVSE G ++Q + + + S ++ + +L+N K +P + + Sbjct: 1 MSRKDWIEYTVSEQDTGMNVEQIVRQKL-NVSGRMMQRLTRSKGILLNRK---QPFLQRQ 56 Query: 59 VLGGEQVAINA-EIEEEARFEPQ--------DIPL---DIVYEDEDIIIINKPRDLVVHP 106 V G+ +A+ E +E+ +PQ + P+ DI+YED+ ++I NKP ++VHP Sbjct: 57 VKAGDTIAVRVIERQEQVPRQPQHDTKPEGPNTPMPSIDILYEDDHLLIANKPAGMMVHP 116 Query: 107 GAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166 D T+++AL + VHRLDKDT+G ++VAK+ L+ Sbjct: 117 IKQETD-TLVHALAAVLAARGEQTSVHPVHRLDKDTSGAILVAKSSYGHQLADRLLREGG 175 Query: 167 ITREYEAVAIGHMTAG-GTVDEPI---SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHT 222 I REY AVA G ++ G GT+D PI +RHPTKR V G PA+THY + + T Sbjct: 176 IHREYLAVASGVLSEGAGTIDAPIGRDARHPTKRR---VVESGDPAITHYEVQQTSEEMT 232 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT 282 R+ LETGRTHQIRVH AHI HPL GD +YGG +G RQALHA+ Sbjct: 233 LARVWLETGRTHQIRVHFAHIGHPLAGDTMYGG----ARGL----------LRRQALHAS 278 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMRADF 316 L HP+ E+ APIP DM L M+A+F Sbjct: 279 KLSFLHPLLEKEIVVEAPIPSDMKRL---MQAEF 309 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 146/296 (49%), Gaps = 18/296 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 ++ LG R+D L E D SRS+I I D +L N + L A + Sbjct: 6 ITSKTLGLRIDHFLNEHL-DLSRSKIASMIKDGTILCNDMPTKANYKTKLNDCITASTYQ 64 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD-V 129 I+ EP + +D+VYEDE ++++NKPR LVVHPG G T+L+ LL+Y D Sbjct: 65 IKT-LDIEPVKMDIDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLYYLNSNCDHY 123 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEP 188 R G+VHR+D++T+GL+V+AK L E L + + R Y A+ G + A +D P Sbjct: 124 IRPGLVHRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLPQAHVLIDAP 183 Query: 189 ISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 I + M V+ KPA TH+ +E + + + +LETGRTHQIRVH H PL Sbjct: 184 IGPDKSNTKIMTVNQARSKPARTHFEKIETYINSSLICCKLETGRTHQIRVHALHANIPL 243 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 GDP YG K Q L A L HP M++ P+P+ Sbjct: 244 HGDPQYGHPSDTDKTG-------------QYLCAARLEFVHPKYLKLMQFEIPLPR 286 >UniRef50_P0A5T2 Uncharacterized RNA pseudouridine synthase Rv1540/MT1592 n=131 Tax=Actinobacteria (class) RepID=Y1540_MYCTU Length = 308 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 156/314 (49%), Gaps = 23/314 (7%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + G R+D LA + SR+ + V +NG K ++++ G + + Sbjct: 8 VPDGLAGMRVDTGLARLL-GLSRTAAAALAEEGAVELNGVPAGK-SDRLVSGALLQVRLP 65 Query: 71 IEEEARFEPQDIPLDI-----VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL--HYY 123 EA Q+ P+DI +Y D+DI+ ++KP + H G TVL L Y Sbjct: 66 ---EAPAPLQNTPIDIEGMTILYSDDDIVAVDKPAAVAAHASVGWTGPTVLGGLAAAGYR 122 Query: 124 PPIADV-PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 + V R GIVHRLD T+G+MVVA + A T L + + R + + Y A+ GH + Sbjct: 123 ITTSGVHERQGIVHRLDVGTSGVMVVAISERAYTVLKRAFKYRTVDKRYHALVQGHPDPS 182 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GT+D PI RH A+ G+ ++THY +E F + L + LETGRTHQIRVH A Sbjct: 183 SGTIDAPIGRHRGHEWKFAITKNGRHSLTHYDTLEAFVAASLLDVHLETGRTHQIRVHFA 242 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HP GD VYG P+ ++ DRQ LHA L HP G +E +P Sbjct: 243 ALHHPCCGDLVYGADPK---------LAKRLGLDRQWLHARSLAFAHPADGRRVEIVSPY 293 Query: 302 PQDMVELIEVMRAD 315 P D+ ++++R + Sbjct: 294 PADLQHALKILRGE 307 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 151/277 (54%), Gaps = 21/277 (7%) Query: 41 LDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPR 100 +++ V VNG+ + E + G+++ ++ +EEE EP+ L +VYED+ ++I+NKP Sbjct: 43 MEKGVTVNGE-QRRWNELLKEGDKLQVHMFMEEEYDVEPEYGELHVVYEDDHVLIVNKPE 101 Query: 101 DLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE 160 + HP GT+ N + ++ + +HRLDKDTTG +V AK A + Sbjct: 102 KMDTHPSEKGGMGTLANLVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAGAIMDR 161 Query: 161 SLQRREITREYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR 219 L R+I R Y A+ G + GT+D I R T V P G A+T+Y++ E+F+ Sbjct: 162 LLMERKIKRTYAALVEGKVKKKQGTIDAAIGRDRHHATRRRVSPKGDQAITYYKVEEYFK 221 Query: 220 VH--TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQ 277 T + L+LETGRTHQIRVHM++ +PLVGD +YGG + ++S RQ Sbjct: 222 KQNVTLVTLQLETGRTHQIRVHMSYNGNPLVGDVLYGGGTK--------YMS------RQ 267 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 ALHA + HPI+ E+E P P +L + M+A Sbjct: 268 ALHAMKINFLHPITKEEIEVDVPFP---TKLNDTMKA 301 >UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHV8_9CLOT Length = 299 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 121/229 (52%), Gaps = 14/229 (6%) Query: 83 PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDT 142 P DI YED+D++++NKP VHP G+ + ++ N Y + V+RLD+ T Sbjct: 79 PFDIAYEDDDLLLVNKPAGTPVHPSPGHYEDSLANYSAWQYAQRREQLVFRPVNRLDRGT 138 Query: 143 TGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHPTKRTHMAV 201 +GL+ VAK AQ RL + L R Y AV G + A GT+D PI R P V Sbjct: 139 SGLLCVAKNAHAQARLSQQLHTGAFERIYYAVVCGAPSPAAGTIDLPIGRTPGSVLKRRV 198 Query: 202 HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPK 261 P G AVTHY + +T L++RLETGRTHQIRVH AH+ PL GD +YG R Sbjct: 199 DPQGARAVTHYETVRVNGAYTLLKIRLETGRTHQIRVHFAHLGCPLFGDFLYGTERRD-- 256 Query: 262 GASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 + ALH+ +RL HPISG E+ P+P M L++ Sbjct: 257 -----------VVEGHALHSGEIRLLHPISGEEIRCSVPLPAYMENLMD 294 >UniRef50_B0SGK3 Pseudouridylate synthase, 23S RNA-specific n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SGK3_LEPBA Length = 312 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 147/262 (56%), Gaps = 14/262 (5%) Query: 5 VQLTATVSENQLGQRLDQALAE-MFPDYSRSRIKEWILDQRVLVN---GKVCDKPKEKVL 60 +Q+ TVSE+ RLD L + D SRS +++WI D + N +V K KV Sbjct: 1 MQIFVTVSEDYDQSRLDVFLKDNAGDDLSRSTVQKWI-DSGFVTNKTKDQVVHKNGYKVA 59 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE+ ++ +R EP + + ++Y++++ ++I+K + H G G+ +++N LL Sbjct: 60 LGEEFVVDVIARPPSRLEPIAMDIPVLYDEDEFMVIHKKAGIACHSGPGDDSPSLVNGLL 119 Query: 121 HYYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA-VAI 176 + + ++ R GIVHRLDK T G++++AKT A L + Q R + + Y A V Sbjct: 120 YQFKNLSGTGGERRPGIVHRLDKPTEGVLIIAKTDRAHAALSKLFQDRLVEKTYYAWVLQ 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRI-----MEHFRVHTRLRLRLETG 231 + A GT++ PI RHP +R M V G+ A+THY+ + R + ++L LETG Sbjct: 180 APVEAEGTINMPIGRHPVERVKMCVREDGRMAITHYKTEKIVQTQTGRKFSLMKLGLETG 239 Query: 232 RTHQIRVHMAHITHPLVGDPVY 253 RTHQIRVHMA + P+VGD +Y Sbjct: 240 RTHQIRVHMAKVGCPVVGDSLY 261 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/304 (31%), Positives = 160/304 (52%), Gaps = 19/304 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 +S+ G ++ L + YS +I++ + +L+NGK +K L E + Sbjct: 31 ISQEHEGFTVENYLKNIL-QYSGRKIQKLTRRKGILLNGKTVYL--QKKLNAEDTLSILD 87 Query: 71 IEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 +E+ +P+ ++++YED+ ++++NKP +VHP GT+ N L +Y V Sbjct: 88 LEDTNYGVQPEKGAIEVLYEDDFLLVLNKPAHQLVHPTGQTTRGTMANYLAYYLKQRNVV 147 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEP 188 VHRLD++T+G ++ AK +Q L + L+ R + R Y A+ G + GT+D P Sbjct: 148 SAIRPVHRLDRETSGCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPPSGTIDAP 207 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 I HP+ A++ G+ ++THY+ + F + L+L L+TGRTHQIR+H+AH+ +P++ Sbjct: 208 IGPHPSLANRRAINEHGEQSITHYQTLRSFPEISLLKLNLDTGRTHQIRLHLAHLGYPII 267 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD +YG R +I +RQALHA + H E+ HAP+P D + Sbjct: 268 GDRMYGVR--------SPWI------NRQALHAYDVSFRHLKENHEIAVHAPLPTDFAQA 313 Query: 309 IEVM 312 I Sbjct: 314 INFC 317 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 102/322 (31%), Positives = 164/322 (50%), Gaps = 29/322 (9%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +QL T +++ RLD L+ +R+ I ++V +N + E+V G++ Sbjct: 6 IQLLVTPQHDRM--RLDAFLSTCSELGARNACAHLIEQRKVEINDTLALSKSERVRMGDR 63 Query: 65 VAINAEIEEEAR---FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL- 120 + + +I+ + IPLDI YED+ +++I+K LV HP G+ D T+ NAL+ Sbjct: 64 ICVAQQIDNTSSSHIMPNASIPLDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNALVA 123 Query: 121 ----HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 + + R GIVHRLD DTTGLMV AK Q L + ++ R R Y + Sbjct: 124 HCGYEHLGLLQGDDRPGIVHRLDMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVLVQ 183 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFRVHTR------LRLR 227 G++T GT+ I+R R M + P + A+T ++ +E F ++ L Sbjct: 184 GYVTPDEGTITTGIARSKKNRLKMCISKDPASREAITTFKTLERFEAGSKDDGYSLLECH 243 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 L TGRTHQIRVHM ++ H +VGDP+YG + +A L+ RQ LH+ + Sbjct: 244 LYTGRTHQIRVHMRYVGHSVVGDPLYGRK-------GDALNQGLQ---RQFLHSWRMSFD 293 Query: 288 HPISGIEMEWHAPIPQDMVELI 309 HPI+ +++ +P D+ E++ Sbjct: 294 HPITHEHLQFCDKLPSDLSEVL 315 >UniRef50_Q1D9A6 Pseudouridine synthase n=2 Tax=Cystobacterineae RepID=Q1D9A6_MYXXD Length = 316 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 99/308 (32%), Positives = 155/308 (50%), Gaps = 27/308 (8%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV ++ GQR+D + E SR+R+K V VNG+ K + G+ +A+ Sbjct: 8 TLTVDADKAGQRVDLFIGEAL-GLSRARLKRLFEAGAVKVNGRPAKK-GLTLTAGQHIAV 65 Query: 68 NAEIEEEAR--FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 E+EEE+R D PL +++ED+ ++ ++KP HP GTV NAL+ YP Sbjct: 66 --EVEEESREAVPDADFPLTVLHEDDSLVFVDKPAGRPSHPLQSGETGTVANALVARYPE 123 Query: 126 IA----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 A D G+ HRLD +T+G++V A+T A + E+ R + + Y A+ G +T Sbjct: 124 CALASLDAREGGLCHRLDVETSGVVVAARTRDAWNAVREAFGSRAVDKRYLALVTGPLTD 183 Query: 182 GGTVDEPISRHPTKRTHMAVHPMG----KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 G +D P+ HP + P G + AV+ + ++ + + +++ TG HQ+R Sbjct: 184 EGDIDLPLRHHPRHPDRVEPAPYGAEDARDAVSKFTVLSRSGEFSVVEVKILTGVLHQVR 243 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 H+A I P+VGD +YGGR P G R LHA L L HP + M Sbjct: 244 AHLAGIGAPIVGDSLYGGREAPELG-------------RFFLHARSLGLTHPQTRRNMTV 290 Query: 298 HAPIPQDM 305 H+P+P ++ Sbjct: 291 HSPLPPEL 298 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/301 (30%), Positives = 148/301 (49%), Gaps = 26/301 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE---IEEE 74 +R+D+ L E+ DYSR+ IK+ + VLVN + K + + V I E I+ + Sbjct: 11 KRIDKFLVEV-TDYSRTSIKKMLEQNLVLVNDNIITKQSYLLQKNDSVEIKNEQCVIDSQ 69 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI 134 P PL+IV+ED+D+++INKP ++VHP + T+ NAL HY I Sbjct: 70 KELLPFACPLEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHY----LKTDDFYI 125 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG---GTVDEPISR 191 HRLDK+T+GL+V+ K A L + ++ + + Y A+ ++EPI Sbjct: 126 THRLDKNTSGLIVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEPIGH 185 Query: 192 HPTKRTHMAVHPMG--KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 + M K A++ +++E ++ + + + TGRTHQIRVHM HI HP+ Sbjct: 186 SYQDKLRMKTGDAKNVKEAISIVKVIEQYQNTALVEVSIITGRTHQIRVHMRHINHPIYN 245 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 DP+YG IS Q LH+ + HP + +E+ +P + + LI Sbjct: 246 DPLYG-------------ISKHTTPYEQYLHSFYISFIHPSTNEIVEFKTLMPNEFINLI 292 Query: 310 E 310 + Sbjct: 293 K 293 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 157/309 (50%), Gaps = 29/309 (9%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 +++E +RLD+ L S I + + V VNGK KP ++ G++V I A Sbjct: 9 SINEENSYRRLDKFLRNELKAVPLSEIYKLLRTGCVQVNGKTVRKPYTELYVGDKVTIKA 68 Query: 70 EIEEEARFEPQDIP-----LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 ++ + +D+P LDI+YED++++I+NK + +HP T++ L H+Y Sbjct: 69 DLA--VYRQKKDLPSIPLKLDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQGL-HFYG 125 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 + +VHRLD+DT+G++V+AK V L + R + +EY + G + G Sbjct: 126 AKKGF-KPHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSGKIFGDGF 184 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 +D+P+ G A+T Y+++E+FR + LR+ L TGRTHQIR H A I Sbjct: 185 IDKPLD--------------GSEALTEYKVLENFRDTSLLRVILHTGRTHQIRKHFALIG 230 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 +P+VGD +YG K +E F RQ LH + +P + AP+P D Sbjct: 231 NPVVGDILYG-----DKKVNELF-KKKHNLRRQFLHCIRISFTNPSEPGVISIKAPLPDD 284 Query: 305 MVELIEVMR 313 + +I+ ++ Sbjct: 285 LERVIKGLK 293 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 148/314 (47%), Gaps = 22/314 (7%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL-GGEQVAIN- 68 V+ G R D L+++ SR+ I + + G+ K +L G+ + ++ Sbjct: 17 VTSQFSGCRFDVCLSKLM-GVSRASAISLIERNQAKILGR--KSQKSSILQDGDTIVVDQ 73 Query: 69 ---AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL----LH 121 AE +EE E + I+Y D+D+++I+KP + H G TV L + Sbjct: 74 KESAEQKEEQNNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAVGID 133 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + D R GIV RLD T+GLM+V KT A + + + + Y A+ G + Sbjct: 134 IKTTLCDESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLAQ 193 Query: 182 G-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 T+D PI R + GKPAVTH+ ++E F T + + LETGRTHQIRVH Sbjct: 194 DKATIDAPIGRAKVSDFRFTITSDGKPAVTHWDVLERFSQATLVSVNLETGRTHQIRVHF 253 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + I HPLVGD +YG P ++ RQ LH+ L HP +G + + Sbjct: 254 SSIGHPLVGDSMYGANP---------VLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKSH 304 Query: 301 IPQDMVELIEVMRA 314 P D+ +E MRA Sbjct: 305 YPLDLQHALEAMRA 318 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 160/309 (51%), Gaps = 23/309 (7%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNG--KVCDKPKEKVLGGEQVAI 67 TV G +D L E + + + + +++ ++VNG KV E + G+++ + Sbjct: 13 TVPTKWSGMSIDSLLKEEW-GIPKKLLHKLRMEKGIIVNGERKVWS---EMLQEGDKLQV 68 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + +EE +P+ L++++ED+ ++I+NKP + HP GT+ N + + Sbjct: 69 HMFAQEEYGVQPEYGDLEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAFHLQMQG 128 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVD 186 + +HRLDKDTTG +V AK A + L R I R Y A+ G + G +D Sbjct: 129 VETKVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRKKQGIID 188 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTHQIRVHMAHIT 244 E I R T V G AVTHY+I ++F+ T + L+LETGRTHQIRVHM+H Sbjct: 189 EAIGRDRHHATRRRVSQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQIRVHMSHSG 248 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HPL+GD +YGG+ +T + QALHA + HPI+ E+ AP+P + Sbjct: 249 HPLIGDVLYGGQ------------ATYMPY--QALHAMRIHFLHPITKEEITVEAPLPNN 294 Query: 305 MVELIEVMR 313 + +IE + Sbjct: 295 LNNIIESFK 303 >UniRef50_UPI000178A5E6 pseudouridine synthase, RluA family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A5E6 Length = 302 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 130/238 (54%), Gaps = 16/238 (6%) Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAG 133 E EP+ L ++YED+ +++NKP L VHP + + T+ + + YY Sbjct: 72 EYGIEPRWQELQVLYEDDFCLVVNKPAGLAVHPDNESRETTLNHVVAAYYEAEGIHAAVR 131 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRH 192 +HRLDKDTTG ++ AK AQ +L E+++ ++I R Y A+ G ++ +D PI + Sbjct: 132 HIHRLDKDTTGPVLYAKNEYAQLKLDEAMREKKIVRMYAAIVQGRVSQELKRIDLPIGKD 191 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 + V G+ A+TH E + + L +RLETGRTHQIRVH++H+ HPL+GD + Sbjct: 192 RYHASRRRVSLTGQAAITHILSAEAYPKASLLHIRLETGRTHQIRVHLSHMGHPLLGDVL 251 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 YGG F RQALH L +HP +G +E AP PQDM+EL E Sbjct: 252 YGGPG---------------TFARQALHGERLLFHHPFTGESIEVPAPWPQDMMELRE 294 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 132/240 (55%), Gaps = 15/240 (6%) Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR 131 +E + P+ + L+I+YED ++ +NKP ++VHP GT+ N +L+++ + R Sbjct: 72 SQETQVVPERMELNILYEDAHLLAVNKPPGMLVHPLTNETSGTLANGVLYHWLQQGTIDR 131 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPIS 190 VHRLD++T+G++++A+ Q +L +++ + R Y A+ G + G + PI+ Sbjct: 132 FRPVHRLDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQPEQGVIQAPIA 191 Query: 191 RHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 + P GK A++HY+++ F + +R+ LETGRTHQ+RVHMAH+ HPL+GD Sbjct: 192 LEEGSFIKRMISPAGKEAISHYQVLRTFNQASLVRVELETGRTHQVRVHMAHMGHPLLGD 251 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 +YGG K RQALH L HP+ G ++ + D+ +L+E Sbjct: 252 SLYGGDTSNIK--------------RQALHCAYLAFNHPVQGSRIKISCSVAGDIRQLME 297 >UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELJ1_PEDAC Length = 301 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/289 (33%), Positives = 149/289 (51%), Gaps = 29/289 (10%) Query: 32 SRSRIKEWILDQRVLVNGK--VCDKPK---EKVLGGEQVAINAEIEEEARFEPQDI---- 82 +R RI +L GK V ++PK E V G+QV + E P + Sbjct: 20 TRKRISRALLKSIKFNGGKILVNEQPKRTNEMVTAGDQVTVELPPEPG---NPHVVRSRQ 76 Query: 83 PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP-IADVPRAGIVHRLDKD 141 P+D++YED+D +++NKP L A N T++N + +YY + +V RLD+D Sbjct: 77 PIDVIYEDQDYLVVNKPPFLPTVQSARNQTDTLVNRVKNYYAERDYESQVVHVVTRLDQD 136 Query: 142 TTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHPTK--RTH 198 T+GL++ AK A T + + L++ + + Y A+A G G +D PI R P + Sbjct: 137 TSGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQSHGLIDAPIERDPASFIKRR 196 Query: 199 MAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR 258 +A GKP+ T Y ++E + L+++L TGRTHQIRVH + + HPL+GDP+Y Sbjct: 197 VASAGNGKPSKTEYWVLEQTDTDSLLKVQLHTGRTHQIRVHFSELHHPLIGDPLYNE--- 253 Query: 259 PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 ++ R RQALH L+ + G +++ APIP DM+E Sbjct: 254 ----------TSFRSLQRQALHCFSLKFENVFRGKKIDVQAPIPNDMLE 292 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 151/307 (49%), Gaps = 25/307 (8%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +T + E+ G L L E F ++R E + Q VL+N K D + G Sbjct: 2 THVTLPILEDWEGLSLTTILQEKFHLGKKAR-HEIRMSQNVLLNNKPLDDWNTPLFVGAS 60 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 +++ + + + + L+I+YED+ ++++NKP D+ H T NA+ +Y Sbjct: 61 LSLPVFLHD--KIPTYEYDLEIIYEDDFLLVVNKPVDMKTHANDSYETDTCANAVQYYLE 118 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-- 182 A VHRLD+ T+GL++ AK A L ++ R I R Y A G T G Sbjct: 119 KTGQDANALAVHRLDQTTSGLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDG--TWGLV 176 Query: 183 -GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVH 239 T+++PI + + P G+PAVTH +++E+ + + + ++ETGRTHQIRVH Sbjct: 177 MQTINKPIGEDRHHGSRRQISPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVH 236 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++ I HP++GD +YGG PR +R LHA L L HP G EM + A Sbjct: 237 LSGIGHPIIGDTLYGGSPRA---------------NRIMLHAEKLHLNHPFKGKEMNFSA 281 Query: 300 PIPQDMV 306 P D V Sbjct: 282 PAGDDWV 288 >UniRef50_C4GBK1 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBK1_9FIRM Length = 341 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 148/293 (50%), Gaps = 41/293 (13%) Query: 42 DQRVLVNGKVCDKP--KEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKP 99 +Q VNGK KP + + G ++ I E + + F P ++PL+I+YEDEDI++I+KP Sbjct: 62 EQDYRVNGK---KPVLWQPLPAGSRIQIILEDRKSSPFAPVNLPLNIIYEDEDILLIDKP 118 Query: 100 RDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV 159 + HP + T+ NA+L+YY I +RLD DT+GL+ V+K A R+ Sbjct: 119 AGMPSHPSMNHQKDTLANAVLYYYQKQGIPFVFRIANRLDMDTSGLVAVSKNSLAAARVK 178 Query: 160 ESLQRREITREYEAVAIGHMTA---------------------GGTVDEPISRHPTKRTH 198 + + +R+I REY + G +A GG + PISR Sbjct: 179 QMIDKRQIHREYLCIVEGSFSADSSLAKRDFVKMRYDADGQMIGGRIWAPISRREGSVLE 238 Query: 199 MAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP 257 V+ G+ A+T + I++ ++ LR+ L TGRTHQIRVHM ++ HPL D +Y Sbjct: 239 RRVNASDGQTALTDFEIVQEGAKYSLLRVWLGTGRTHQIRVHMNYLGHPLPADYLYH--- 295 Query: 258 RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 + RQ LH+ LR HP+SG +M + + +P DM L++ Sbjct: 296 -----------PVYQDISRQPLHSAKLRFPHPVSGRQMCFESRLPADMRHLLD 337 >UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterales RepID=A7I2U9_CAMHC Length = 357 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 162/329 (49%), Gaps = 42/329 (12%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD L ++ SR++I I + + VN V +K K+ + V IN +++E Sbjct: 24 RLDIFLTKILK-ISRNKILNLIEENHIFVNNSVQNKASFKLKNDDIVGINFPLKKENENL 82 Query: 79 PQDIPLDI--VYEDEDIIIINKPRDLVVHPGAGNPDGTV---LNALLHYYPPIADVPRAG 133 Q+ DI +YED+D++++NKP +VVHP + T+ L + I RAG Sbjct: 83 KQNANFDIEILYEDDDLLVLNKPSGVVVHPAKSVKEPTLAEWLKQKKYMLSSINGDERAG 142 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 IVHRLDK T+G ++VAKT A +L L+ + + R Y A + VD I+R+P Sbjct: 143 IVHRLDKQTSGAILVAKTDFAHVKLAAQLKDKSMGRIYLAFLDLALKENVCVDRFIARNP 202 Query: 194 TKRTHMAVHP-------MGKPA---VTHYRIMEHFR------VHTRLRL---RLETGRTH 234 + R AV P K A + + I+++F+ T L +L TGRTH Sbjct: 203 SNRLKKAVVPPNENGARSAKSAFLNIANDTILQNFKPLNFSQNQTNFNLIAAKLFTGRTH 262 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH++ I ++GD +YG F S K R LHA +L HP + + Sbjct: 263 QIRVHLSSINRHIIGDFLYG------------FKSDFDKIKRIFLHAYLLYFTHPRTNRQ 310 Query: 295 MEWHAPIPQDMVELIEVMRADFEEHKDEV 323 + A IP + LIE ++DF KDE+ Sbjct: 311 ILISAKIPSEFKNLIE--KSDF---KDEI 334 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 109/319 (34%), Positives = 158/319 (49%), Gaps = 32/319 (10%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q + V++ G RLD LA SRS + I +VLVNG + K ++ Sbjct: 4 QFSLIVTQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNGLA--RSKRSIVAPGDT 61 Query: 66 AINAEIEEEA----RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + EI R EP IPLD+ +ED ++ I+K L VHP G+ GT++NAL++ Sbjct: 62 IVYEEIPLATHIPLRGEP--IPLDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNALIY 119 Query: 122 YYP--PIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 Y +A V R GIVHRLD DT+GLM+ AK L + ++ ++ R Y + Sbjct: 120 AYGRDSLAHVQGDDRPGIVHRLDMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTLVH 179 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFRV------HTRLRLR 227 G++ G +DEPI R R M + P + A+T + ++E F +T L R Sbjct: 180 GNIAFDTGQIDEPIGRVGDDRLRMKISYRPTARNALTTFTVLERFEAGRADNGYTLLECR 239 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 L TGRTHQIRVHM I H VGDP+Y G + + + RQ LH+ L Sbjct: 240 LYTGRTHQIRVHMEFIGHCCVGDPLY------RWGNEQVNL----ELSRQFLHSYSLSFN 289 Query: 288 HPISGIEMEWHAPIPQDMV 306 HP++G ++ +P D+ Sbjct: 290 HPMTGDDIALVDGLPPDLF 308 >UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3I7_9FIRM Length = 294 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 127/231 (54%), Gaps = 18/231 (7%) Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138 P+ +PL I+YED+D+++++KP +VHP GT+ NA+ YY HRL Sbjct: 72 PESLPLSIIYEDDDLLVLDKPAGQLVHPTTKETHGTIANAVRGYYAACGVHLDFHPCHRL 131 Query: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRT 197 D++T+GL+++AK Q ++ Q+ + REY A+ G +T G +D PI+R Sbjct: 132 DRNTSGLLLIAKHPEVQYQIA---QQNTLRREYLALIAGSLTPPEGCIDVPIARALPSII 188 Query: 198 HMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP 257 V GK A THY ++ ++ LRL+L+TGRTHQIRVH+AH+ HPL+GD +YGG Sbjct: 189 LRCVSTEGKSACTHYVTVQTDGRYSLLRLQLDTGRTHQIRVHLAHLGHPLLGDDLYGG-- 246 Query: 258 RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 T + R ALH+ L L HP + + A +P DM + Sbjct: 247 ------------TRAEIARHALHSAHLTLVHPRTKKMLALSALLPADMARI 285 >UniRef50_D1BPK7 Pseudouridine synthase n=3 Tax=Veillonella RepID=D1BPK7_VEIPT Length = 288 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/267 (32%), Positives = 135/267 (50%), Gaps = 16/267 (5%) Query: 20 LDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEP 79 + + + E F SR I+ +RV VN +V + + G+ + + +++ + Sbjct: 16 VSKYVKERFSLSSRD-IQMMFRKKRVKVNSRVA-HSQRALKKGDVLTLELPQDKDYGVDV 73 Query: 80 QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLD 139 + P+ ++YED +++NK ++VHP T+ N + YY V + VHRLD Sbjct: 74 EKGPITVLYEDAHTLVVNKDPFMLVHPAGQTKSCTLSNYVAGYYAKKNVVHKVRPVHRLD 133 Query: 140 KDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHM 199 +DT+G ++ KT AQ + LQ I R Y + G + A G VD PI P Sbjct: 134 RDTSGCILFGKTKEAQQYYTDELQAGRIDRIYTGLVEGRIDANGMVDAPIGVDPVFDNRR 193 Query: 200 AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRP 259 + +G+PA T Y +++H +T LR +L TGRTHQIRVHM HI HP+VGD +YG R +P Sbjct: 194 VIDELGQPAQTEYIVLDHEGDNTLLRFKLLTGRTHQIRVHMEHIGHPIVGDAMYGTRNKP 253 Query: 260 PKGASEAFISTLRKFDRQALHATMLRL 286 + RQ LHA+ L Sbjct: 254 --------------YIRQCLHASELTF 266 >UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cystobacterineae RepID=Q1D114_MYXXD Length = 306 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 18/316 (5%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 Q+VQ V G+RLD+ L++ P + R + I V + GK C +P K+ GG Sbjct: 4 QKVQ----VPREAAGERLDRFLSKQVPGINLERARALIDSGAVRIRGKRC-QPTRKLWGG 58 Query: 63 EQVAINAEIEEEARFEPQDIP-LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 E++ + A + P L ++++D ++I+NKP +VV P +V+ L Sbjct: 59 EEIELERPEPRAASVAASEGPVLPVLHDDSALVIVNKPPGIVVEPEGRA--ASVVGLLAA 116 Query: 122 YYPP--IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 PP + + + G+VHRLD++T+G + A+T A L+ S Q + + + Y + +G Sbjct: 117 QRPPFDVEGLAQPGVVHRLDRETSGCLAFARTDTAAAALLRSFQEKRVDKRYWTLVLGQP 176 Query: 180 TAGGTVDEPISRHPTK-RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 A G ++ P +R P R P + A + + E F L + L+TGRTHQ+RV Sbjct: 177 PAQGRLEGPYARDPADPRRFTTRVPSARRAALSFEVRERFADAALLEVDLDTGRTHQVRV 236 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 ++ P++ D +YG PP+ + A L RQALHA L L P +G + Sbjct: 237 QLSEAGFPVLADSLYG----PPEARAHAAARAL---GRQALHAFTLELPSPATGQPVRVE 289 Query: 299 APIPQDMVELIEVMRA 314 AP+P+D + V+R Sbjct: 290 APLPEDFQRALTVLRG 305 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 22/247 (8%) Query: 72 EEEARFEP-QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 +E + F P I ++ VYEDE +++I+KP +VVHP G + T+ +AL+HY + + Sbjct: 83 KESSYFTPYSGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTVGEEF 142 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPI 189 + ++RLD DTTGL+++AK Q +V ++R + + Y AV G G +D PI Sbjct: 143 KIRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGIIDAPI 202 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIM---EHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 + V GKP++T Y+++ + V + L +RL TGRTHQIRVH+ HI P Sbjct: 203 -KAVEGEPRRQVMEGGKPSITEYKVVGVSDELNV-SFLDVRLHTGRTHQIRVHLKHIGCP 260 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 ++GD YGG+ DRQ LH+ LR HP+S +E A +P D+ Sbjct: 261 ILGDEFYGGKESA---------------DRQLLHSRYLRFTHPVSKKIVELTANLPDDIA 305 Query: 307 ELIEVMR 313 ++ M+ Sbjct: 306 SILTHMQ 312 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 29/282 (10%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG-GEQVAINAEIEEEA 75 G L+QA + + + EW + + V +N + P ++ +++ I + EE+ Sbjct: 32 GLSLEQAFQTKW-FVPKKMLHEWRMTKGVAINDNIA--PFHTIISPNDRIRIRIK-EEQI 87 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 P +PL IV+ED+ ++++NK + VHP T+ NA+ ++ + + Sbjct: 88 EPTPTYVPLHIVFEDDHVLVVNKRAHMDVHPTQPGQTNTLANAVAFHFQCEGIYSKVRHI 147 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISR--- 191 HRLD+DT+G+++ AK A L + L +R I R Y A+ G++ GT++ PI R Sbjct: 148 HRLDRDTSGVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGTIEAPIGRDRH 207 Query: 192 HPTKRTHMAVHPMGKPAVTHY-RIMEHFRVHTRL-RLRLETGRTHQIRVHMAHITHPLVG 249 HPT+R V G A+THY R+ + H L RL L+TGRTHQIRVHM++I HPLVG Sbjct: 208 HPTRR---RVSKTGDTAITHYERLQYDKQKHVSLVRLTLDTGRTHQIRVHMSYIGHPLVG 264 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 D +YGG+P DRQALHA L HP + Sbjct: 265 DTLYGGKPW---------------IDRQALHAFSLSFLHPFT 291 >UniRef50_B0VCN8 Pseudouridine synthase n=16 Tax=Acinetobacter RepID=B0VCN8_ACIBY Length = 212 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 24/222 (10%) Query: 86 IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGL 145 ++Y D+D ++I+KP D++ PG G+ +VL L +A PR ++HRLD+DT+G+ Sbjct: 9 LIYRDDDFMVIHKPSDILSVPGKGDLHDSVLTRL------VAIEPRTLLIHRLDRDTSGI 62 Query: 146 MVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK-RTHMAVHPM 204 +V + Q+ + Q R+ ++ YEA+ GH+ GTVD P+ P++ H+ Sbjct: 63 LVFGLSKRGQSAIARQFQDRQTSKIYEALVAGHLEGEGTVDIPVVYDPSRPPLHIVDASH 122 Query: 205 GKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPP 260 KPA+TH++ +EHF++ TR++L TGR+HQ+RVHM ++ HP+VGD +Y Sbjct: 123 NKPALTHWQAIEHFQIQGQPVTRVKLTPITGRSHQLRVHMQYLGHPIVGDTLY------- 175 Query: 261 KGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 A E + R LHA L HP++G + ++ P+P Sbjct: 176 -AAPEQLL-----VPRLCLHAKQLSFNHPVTGESLTFNCPVP 211 >UniRef50_Q8EWS1 Pseudouridine synthase n=1 Tax=Mycoplasma penetrans RepID=Q8EWS1_MYCPE Length = 298 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 156/302 (51%), Gaps = 21/302 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE--IEEEA 75 QRLD ++ F SRS K I + V VNGK+ KP KV ++ + E +EE Sbjct: 5 QRLDILVSSKFS-LSRSIAKHKIENNLVTVNGKIISKPNTKVDEESEIILKEEKIVEETK 63 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI-----ADVP 130 P ++IVYED+ I+I+NKP D++VHP + + T+ N + + + D Sbjct: 64 VLTPWKKDIEIVYEDKYILIVNKPNDIIVHPTSYDLSNTLANIIKYIFDSKKIKYNGDPL 123 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPI 189 R GIVHRLDK T GL++VAK++ + + ++I ++Y A+ H+ T VD PI Sbjct: 124 RMGIVHRLDKCTEGLVIVAKSLDSFNAFTKLFLDQKIEKKYLALLHNHLQTRTVEVDAPI 183 Query: 190 SRHPTK-RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 R T R ++ K A T ++ + ++ T + L TGRTHQIRVH I + ++ Sbjct: 184 KRVETSTRREVSRDIDAKEARTIFKEINKYKNFTLAEVELFTGRTHQIRVHAEFIKNHVI 243 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 DP+YG PK I+ K+ Q L A L+ HP + E+ + +P++ E Sbjct: 244 NDPIYG-----PKH-----INKTTKYG-QYLVAYKLKFIHPFTQKEVNINLDMPKEFKEY 292 Query: 309 IE 310 I+ Sbjct: 293 IK 294 >UniRef50_A7VVQ2 Pseudouridine synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVQ2_9CLOT Length = 298 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 85/246 (34%), Positives = 126/246 (51%), Gaps = 24/246 (9%) Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR 131 +E P+ +P+ +++ED+ ++I+NKP + VHP G+ GTV N + +Y + R Sbjct: 67 QEHNSMAPEALPVSVLWEDDALLILNKPPLMPVHPCPGHDRGTVCNFVSYYQKRKGEDWR 126 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISR 191 ++RLDKDT+GL++ AK + L ++ + Y AV G + G +D PI Sbjct: 127 FRPLNRLDKDTSGLVIGAKDSYTASAL------NDVGKTYFAVCQGSLPGEGVIDTPIRL 180 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 GKPAVTH++ + + +T L L LETGRTHQIRVH++ I HPL Sbjct: 181 KEGHSIQREAGEGGKPAVTHWKSLAQGAAAGKSYTLLALTLETGRTHQIRVHLSSIGHPL 240 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 GD YGG S IS RQALH ++ L HP + AP P D + Sbjct: 241 AGDDFYGG--------SRELIS------RQALHCGLVELTHPFFLSRICVKAPFPNDFKK 286 Query: 308 LIEVMR 313 ++E + Sbjct: 287 ILEFLN 292 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 36/309 (11%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 T++ + RLD L+E PDYSR I+ I +V VNGK KP + G+ N Sbjct: 6 TLTFSGTSARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGKE-RKPAWPLAEGD----NV 60 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGA----GNPDGTVLN-----ALL 120 EIE + + I++ED+++ +INKP ++VHP + NP + +L+ Sbjct: 61 EIEWPSVENKTGLKDLIIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLI 120 Query: 121 HYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 PP + RAG+VHRLDKDT+G+M++AK Q +VE RE+ + YEA+ G Sbjct: 121 LANPPKNFEKGITRAGLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCG 180 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + G ++ PI R + +G+ AVT Y +++ + ++L TGRT+Q+ Sbjct: 181 VVPDDKGIINVPIGR--VTGGKIKASELGREAVTEYSVLQRKETVSLMKLHPVTGRTNQL 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM+ + +P++GD +Y G P R LH+ HP + ++ Sbjct: 239 RVHMSWLGYPVLGDWLYKGATAP----------------RLMLHSKSAEFEHPFTSKPVK 282 Query: 297 WHAPIPQDM 305 + P+D Sbjct: 283 FTVAPPKDF 291 >UniRef50_C6J215 Pseudouridine synthase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J215_9BACL Length = 310 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 140/267 (52%), Gaps = 28/267 (10%) Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG------ 113 L G+++ + A +++ P + L ++YED+ ++++KP L VHP GN G Sbjct: 59 LAGDRLRLLAFPARASQYAPVEAELSLLYEDDFCLVVHKPAGLKVHPD-GNEGGASRRDS 117 Query: 114 ----TVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITR 169 T+ N + +Y + A +HRLD+ T+G ++ AK A +L E++ R+EI R Sbjct: 118 APPDTLANRVAGWYASLGQPIAAAHIHRLDEYTSGPVLFAKNEYAHLKLDEAMSRKEIGR 177 Query: 170 EYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRL 226 Y A G +++ +D+PI R V P GKPA+TH +ME + H + +RL Sbjct: 178 TYIAFVQGVVSSALKIIDQPIGRDRHHNQRRRVSPTGKPAITHVELMEVYPKHEVSLVRL 237 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL 286 LETGRTHQIRVH++ HPLVGD +YGG + + QALH L Sbjct: 238 TLETGRTHQIRVHLSAAGHPLVGDALYGG--------------STKWLPYQALHGERLVF 283 Query: 287 YHPISGIEMEWHAPIPQDMVELIEVMR 313 HP++G +E P P +++L + R Sbjct: 284 PHPLTGETVELDDPWPSAIIQLRDRFR 310 >UniRef50_C3RIE2 Pseudouridine synthase n=4 Tax=Bacteria RepID=C3RIE2_9MOLU Length = 294 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 23/307 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 QL S N+ + D L E + Y++ +K + ++V VNG+V + + ++ Sbjct: 9 QLRRKKSMNKYLVKTDSTLMEFLLNHYNKKNVKNLLKFKQVSVNGQVISQFDYSLKRDDE 68 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + ++ R + LDI+YED ++I+INKP L+ G + T + + Y Sbjct: 69 IVVD-------RNPNNNSSLDIIYEDRELIVINKPAGLLSMAGGNEKEKTAYHLVGEYLK 121 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 R IVHRLDK+T+G+++ AK + +L + R Y A+ G + G Sbjct: 122 SKNKNARVFIVHRLDKETSGVLLFAKNEIIKNKLQNNWNDIVYKRGYLAIIEGKLKKKHG 181 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 T+ + T+ ++A + GK A+T+Y++++ R ++ + + LETGR +QIRVHM + Sbjct: 182 TIKNHLDESKTQMVYIANNGKGKLAITNYKVLKESRYNSLIEVFLETGRKNQIRVHMQSL 241 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 H +VGD YG P K R LH+ + HP + ME+ A +P+ Sbjct: 242 GHSIVGDKKYGATTNPIK--------------RMGLHSHVFAFVHPDTKARMEFKAVVPE 287 Query: 304 DMVELIE 310 + ++ + Sbjct: 288 EFKKMFK 294 >UniRef50_Q03EW7 Pseudouridine synthase n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EW7_PEDPA Length = 253 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 129/234 (55%), Gaps = 21/234 (8%) Query: 80 QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH--- 136 D+P+D+ YED D +I+NKP L A N T++N + +YY + + + +VH Sbjct: 24 SDVPIDVRYEDADYLIVNKPPFLPTVQSAANQKDTLVNRVKNYY--VKNNYESRVVHVVT 81 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHPTK 195 RLD+DT+GL++ AK A T + + L++R+I + Y + G T G ++ PI R P Sbjct: 82 RLDQDTSGLVIFAKHRFAHTVMDQDLRQRKINKMYLTIVEGTFTNQHGIIETPIQRDPDS 141 Query: 196 RTHMAVHPMG--KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 V PMG KP++T Y + + F+ T L+++L +GRTHQIRVH + I HPLVGD +Y Sbjct: 142 FIKRMVAPMGEGKPSLTEYWVEDTFKNFTLLKVKLHSGRTHQIRVHFSSIGHPLVGDELY 201 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 GG A++ RQALH L + + ++ IP DM+E Sbjct: 202 GGM------ANDI-------LQRQALHCFSLTFKNVFTEKMIDIKTSIPDDMLE 242 >UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PT91_9SPIO Length = 326 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 43/321 (13%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD + + P+ +RSR+K + Q V +NG+ K V G+++ + Sbjct: 17 RLDAFCSSVLPNMTRSRLKTGM--QSVELNGRQA-KLSSSVQAGDRIKLMWNNPSPDFLI 73 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPI--------- 126 P+ IPL I+YED D+I +NK +V HP AGN GT++ AL +Y PI Sbjct: 74 PEHIPLQILYEDNDVIAVNKRVGMVTHPAAGNWTGTLVQALAYYRLHTSPIHDKFAGLLE 133 Query: 127 --------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG- 177 D+ RAGIVHRLDKDT+G+++ A++ A+ L + + R + Y A+ G Sbjct: 134 AEQGRGNFEDLLRAGIVHRLDKDTSGVLITARSAAAEAFLKDEFKMRRTEKYYAAILNGV 193 Query: 178 HMTAGGTVDEPISRHPTKR---THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 G ++ + R R T A GK A + Y+++ + + + +++TGRTH Sbjct: 194 PEKRTGVIETSVFRDEHSRIRFTASADLAKGKYARSRYKVLRVYGRYALVLFKIDTGRTH 253 Query: 235 QIRVHMAHITHPLVGDPVYGGRPR--PPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 QIR+H I P+VGDP+YG + P G LHA L + P + Sbjct: 254 QIRLHARFIGCPIVGDPLYGKKEAEWKPYG--------------MMLHAYRLCVALPSTR 299 Query: 293 IEMEWHAPIPQDMVELIEVMR 313 + + AP+P+ ++ ++R Sbjct: 300 EKTVFTAPLPRRFQTVLHLLR 320 >UniRef50_B1C3D3 Pseudouridine synthase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3D3_9FIRM Length = 310 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 127/248 (51%), Gaps = 21/248 (8%) Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + I A +E + PQ+ PL I YE++ I+I+NKP + ++P T+ N + + Sbjct: 70 NDHLKIKAFNQESIDYVPQEYPLSIAYENDFILIVNKPINTTIYPETKKELNTLCNYVAN 129 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 YY +HRLDKDTTGL++ K Q L + + I R Y A+ G + Sbjct: 130 YYLETNQYLLIRHIHRLDKDTTGLVLFCKCPLLQPILDNMMANKLIKRSYIAICKGIIDH 189 Query: 182 GGTVDEPISR--HPTKRTHMAVHPMGKPAVTHYRIMEH--FRVHTRLRLRLETGRTHQIR 237 T++ I+R H K M + G A+T +I++H + +T + L+TGR HQIR Sbjct: 190 DLTINRDIARDRHVNK---MRITNKGLKAITEIKIIKHDKQKNYTVCKCDLKTGRKHQIR 246 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH+A I HPL+ DP+YG + + DR ALHA L HP++ ++ Sbjct: 247 VHLASINHPLLSDPLYGNKSKL--------------IDRLALHAYKLEFIHPVTKQQIIV 292 Query: 298 HAPIPQDM 305 A +PQDM Sbjct: 293 KADLPQDM 300 >UniRef50_UPI00016B2413 ribosomal large subunit pseudouridine synthase, RluD subfamily protein n=3 Tax=candidate division TM7 RepID=UPI00016B2413 Length = 379 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 154/290 (53%), Gaps = 28/290 (9%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE-EEAR 76 +RLD L E SRS ++ I +VLV+GK+ K+ ++G E N +IE ++ + Sbjct: 113 KRLDILLVEKVGKESRSTYQKMITAGQVLVDGKIAKNAKQ-LVGIES---NVKIESKQQK 168 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHP-GAGNPDGTVLNALLHYYPPIADVPRAGIV 135 F P I + +YED DII+INKP ++ H GA + T + + AD R GI+ Sbjct: 169 FTP--IKYETIYEDNDIIVINKPAGMLTHAKGAIAEEFTAADIVKPITNYKADTNRPGII 226 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPT 194 HRLD++T+G++++ K A +++ + +R + + Y A+ G +D PI R+P+ Sbjct: 227 HRLDRNTSGVLLMVKNSDAASKIQKQFSQRTVKKTYYAIVCGIPYQHKALIDLPIERNPS 286 Query: 195 KRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 + + V GK A T Y + + + ++L+ +TGRTHQ+RVHM ++ P++GD V Sbjct: 287 RPSTFRVGVNGKSAQTSYEVERSIIKKNISLIKLQPKTGRTHQLRVHMQYLNTPILGDLV 346 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 YGG+P +R LHA L + +SG + AP+P Sbjct: 347 YGGKPA----------------ERMFLHAESLEV-TLLSGERKVFKAPLP 379 >UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y726_9BACT Length = 315 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 22/312 (7%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 +S + G+RLD L M+P + ++ V + GK C +P ++VL G+ V + E Sbjct: 7 ISRHDEGRRLDSVLRGMWPGVPLGAMMKYFRKGAVRLEGKRC-QPNDRVLEGQHVWVPWE 65 Query: 71 ------IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 E P+ +PLD++Y D ++++NKP L+ P D V AL + Sbjct: 66 EPGTVGRAEMPDGTPRRLPLDVIYSDRCVMVVNKPAGLLSQPDVKGEDSVVTRALGYAVD 125 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 P + P +VHRLD++T+G+M +A P L+E + R + Y A+ IG + G Sbjct: 126 P--EFP-PQLVHRLDRNTSGVMALALDGPTTRALMECFKARRADKRYWAIVIGELPERGR 182 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 +D P+ + K+ + V P G+ AVT Y+ + + + L TGRTHQIRVHM H+ Sbjct: 183 IDVPLLKDADKKL-VRVDPKGERAVTEYKRLTSSGAFSLAEVHLLTGRTHQIRVHMNHVG 241 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP---ISGIEME-WHAP 300 HPL+GD YG S+ + +L R LHA L L +S +E + + AP Sbjct: 242 HPLLGDVKYG------DFGSKGQLRSL-GVKRPMLHARSLTLNGLPAFLSHLEGKTFRAP 294 Query: 301 IPQDMVELIEVM 312 P D+ ++E + Sbjct: 295 APDDLRRVMEKL 306 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 120/235 (51%), Gaps = 10/235 (4%) Query: 84 LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTT 143 L ++Y D+D+ +I+KP + H G TV L R GIVHRLD +T+ Sbjct: 76 LRVIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDRQGIVHRLDANTS 135 Query: 144 GLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHPTKRTHMAVH 202 GLMV+AK+ A L + + R I + Y+A+ G+ + G ++ PI R R + Sbjct: 136 GLMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRDLKHRDRFCID 195 Query: 203 PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG 262 G+ AVT Y E + T L + +TGRTHQIRVH + + HPLVGD YG P Sbjct: 196 YSGRDAVTQYSTEEVYPGFTLLSVAPKTGRTHQIRVHFSALRHPLVGDVKYGADP----- 250 Query: 263 ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFE 317 S RQ LHA L HP+SG+ +E+ + I +D+ E + ++ ++ Sbjct: 251 ----VFSQKVNLKRQWLHAYHLSFTHPVSGVFVEFESRIHEDLQESLRILSKIYD 301 >UniRef50_B0PDX0 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDX0_9FIRM Length = 292 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 116/234 (49%), Gaps = 20/234 (8%) Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVH 136 FEP +IP++I+YED D+I+ NKP + HP G GT+ N + +V Sbjct: 74 FEPCEIPVEILYEDSDVIVYNKPAAMACHPVRGLRQGTLANVFARDCAANGESCACRLVG 133 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHPTK 195 RLD+DT+G +V+AK A L +++ +Y A+ G G +D PI + K Sbjct: 134 RLDRDTSGAVVIAKNARAAAVLTGHVEK-----QYIALVTGMPNPKHGVIDAPIGQPDRK 188 Query: 196 RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 + GKPAVT Y ++ + L TGRTHQIRVHMA I PL+GD +YGG Sbjct: 189 NPRRMIVANGKPAVTEYETQIRCEGYSVVHCVLRTGRTHQIRVHMASIGCPLLGDTLYGG 248 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 + +RQALH HP+ HAPIP+DM +LI Sbjct: 249 E--------------TERIERQALHCMQASFIHPVDKRLCIVHAPIPKDMQKLI 288 >UniRef50_C7GZU4 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZU4_9FIRM Length = 331 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 133/243 (54%), Gaps = 28/243 (11%) Query: 82 IPLDIVYEDEDIIIINKPRDLVVHP-GAGNPDGTVLNALLHY----YPPIADVPRAGIVH 136 + + I+YED+ II+++KP L+ H G + + T+ + +L Y + R G+VH Sbjct: 104 LKIGILYEDDYIIVVDKPAGLLTHAKGDKSCECTLSDKILEYTEGSLANGSGANRPGVVH 163 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHPTK 195 RLD+ T G+MV+AKT A L E+ +++E+++EYEA+ ++ G + I R+ Sbjct: 164 RLDRGTCGVMVMAKTDTALKHLTEAFEKQEVSKEYEAIVYDNIVRDSGVITAKIERNKKN 223 Query: 196 RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 R M+ G+ A T ++++E F T + L +++GRTHQIRVHM +I HP++GD +YG Sbjct: 224 RLKMSAGDEGREAHTEFKVIERFGKFTYVSLVIKSGRTHQIRVHMNYIHHPVLGDMLYGK 283 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLR-----LYHPISGIEMEWHAPIPQDMVELIE 310 R D+ L MLR HPI+ +ME+ A +P + ++ Sbjct: 284 RK-----------------DKFNLMWPMLRSKKIGFLHPITSEKMEFTAAMPYEFKRILR 326 Query: 311 VMR 313 ++R Sbjct: 327 ILR 329 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 163/318 (51%), Gaps = 21/318 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT T+SE+ GQRLD+ + + D S + + +++ VNG K ++ V G+ V Sbjct: 2 LTFTISEDAAGQRLDKLVRKALRDVPLSHVYKMFRTRKIRVNGG-RGKAEQLVAAGDVVV 60 Query: 67 INAEIEEE-ARFEPQ------DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 I + E AR EP+ + +++ED D++ ++KP L HPG G T++ Sbjct: 61 IRGDEERLLARQEPEPGARAGAVTFGVLHEDADVLAVDKPAGLAAHPGTGISGATLVEMA 120 Query: 120 LHYYPPIADVP----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL-QRREITREYEAV 174 + AD+P + HRLD+DT+G+++VAK RL E ++ + Y A+ Sbjct: 121 RAHLGTPADLPPTEFKPSPAHRLDRDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLAL 180 Query: 175 AIGHM-TAGGTVDEPISRHP-TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGR 232 G M GT+D P++ H T R+ A + A+T ++++ + + L + +ETGR Sbjct: 181 VKGKMPREAGTIDLPLAEHEQTARSKAARGVNLQEALTRWKVVSAMKEASLLAVTIETGR 240 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIR H+ + HP++GD YG P + A + + R LHA L L HP +G Sbjct: 241 THQIRRHLEAVGHPVLGDRRYGDFP-TNRAARQRW-----GLRRMFLHAWRLELPHPTTG 294 Query: 293 IEMEWHAPIPQDMVELIE 310 + AP+P +++E + Sbjct: 295 APLRLEAPLPGELLEALS 312 >UniRef50_Q3A3D8 Pseudouridine synthase n=2 Tax=Desulfuromonadales RepID=Q3A3D8_PELCD Length = 301 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 145/302 (48%), Gaps = 20/302 (6%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLDQ LA PD+SRS ++ I V +NG+ + V G V + + + F Sbjct: 2 RLDQYLASAIPDFSRSFARKIIDLGGVHLNGRRMRRSSFPVPGHAAVEVYLDHRDLDIFA 61 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV---PRAGIV 135 D I+ D ++++NKP + P GT+ ALL + P G+V Sbjct: 62 LDD--EHILLRDRYLVVVNKPPGINSQPTPARYKGTLYEALLRLLDDPYNKGRKPSLGMV 119 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPT 194 RLD+DT+G+M+ + A L + R + + Y A+ G M A G ++R Sbjct: 120 QRLDRDTSGVMIFSIHARAHKSLSDIFAARRVQKHYLALVAGCMQAPQGEFRSLLARQHR 179 Query: 195 KRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 254 +V GK AVT YR++E F L + + TGR+HQIRVH A HPL+GD YG Sbjct: 180 TNLMKSVARGGKEAVTRYRVIEKFGDAELLEVEIPTGRSHQIRVHFAEAGHPLLGDIRYG 239 Query: 255 GRPRPPKGASEAFISTLRKFD--RQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 G R R D RQ LHA L L HPIS + AP+PQD ++L+E+ Sbjct: 240 GPDR------------WRGVDVPRQMLHARRLELLHPISKEPLNIEAPLPQDFLKLLELG 287 Query: 313 RA 314 R+ Sbjct: 288 RS 289 >UniRef50_C7LZI3 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI3_ACIFD Length = 309 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 163/322 (50%), Gaps = 22/322 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +L T+ + G+RLD+A+A + R+ ++ + D VLV+G+V + ++ GE Sbjct: 3 ELRLTIGASLAGERLDRAVA-IAGGIERAFAQQLVDDGGVLVDGRVEQRRSRRLRAGE-- 59 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPG-AGNPDGTVLNALLHYYP 124 + A + A + + YED+D+ +I+KP L+VH + +V + L +P Sbjct: 60 LLEATWPDPAAPPAPEGAPVVCYEDDDVAVIDKPAGLIVHRTHLRDVRPSVADWALERWP 119 Query: 125 PIADVP----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + +P R G+VHRLD+ T+GLMV+A + A L ++ E+ R Y A+ +G Sbjct: 120 SLRALPGDPLRRGLVHRLDRGTSGLMVIALSAGAYESLRRAVHDHEVERRYRALVVGVPP 179 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 ++ P+ R + +AV G+ A T R++ H + + L LETGRTHQIRVH+ Sbjct: 180 QAARIEAPLGRDLRDLSRVAVVSGGRDARTQLRVVWHGPDTSLVELTLETGRTHQIRVHL 239 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + I HP+VGD VYG P G +R LHAT L HP +E A Sbjct: 240 SAIGHPIVGDEVYG----VPYGG----------LERPFLHATALAFEHPTRPGRVEVTAE 285 Query: 301 IPQDMVELIEVMRADFEEHKDE 322 +P+D+ EL R + DE Sbjct: 286 LPEDLGELAARARTEAILRVDE 307 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 510 e-143 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 421 e-116 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 420 e-116 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 417 e-115 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 416 e-115 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 414 e-114 UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enteri... 413 e-114 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 413 e-114 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 412 e-114 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 410 e-113 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 406 e-112 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 404 e-111 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 402 e-111 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 402 e-110 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 401 e-110 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 400 e-110 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 400 e-110 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 400 e-110 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 400 e-110 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 400 e-110 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 399 e-110 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 398 e-109 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 397 e-109 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 396 e-109 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 394 e-108 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 392 e-108 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 392 e-108 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 392 e-108 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 392 e-107 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 391 e-107 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 390 e-107 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 390 e-107 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 390 e-107 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 389 e-107 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 388 e-106 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 388 e-106 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 387 e-106 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 387 e-106 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 386 e-106 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 386 e-106 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 385 e-106 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 385 e-106 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 385 e-105 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 385 e-105 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 385 e-105 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 383 e-105 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 382 e-105 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 382 e-104 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 382 e-104 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 381 e-104 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 381 e-104 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 381 e-104 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 380 e-104 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 379 e-104 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 379 e-104 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 379 e-104 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 379 e-104 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 379 e-104 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 378 e-103 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 378 e-103 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 378 e-103 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 377 e-103 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 376 e-103 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 375 e-102 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 374 e-102 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 373 e-102 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 373 e-102 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 373 e-102 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 372 e-101 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 372 e-101 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 371 e-101 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 371 e-101 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 371 e-101 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 371 e-101 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 370 e-101 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 370 e-101 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 369 e-101 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 369 e-101 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 369 e-101 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 369 e-101 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 368 e-100 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 368 e-100 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 368 e-100 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 367 e-100 UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D... 367 e-100 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 367 e-100 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 367 e-100 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 367 e-100 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 366 e-100 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 366 e-100 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 366 e-100 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 365 2e-99 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 364 2e-99 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 364 2e-99 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 364 2e-99 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 363 5e-99 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 362 7e-99 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 362 1e-98 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 361 2e-98 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 361 2e-98 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 360 3e-98 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 360 3e-98 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 360 5e-98 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 360 5e-98 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 359 7e-98 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 358 2e-97 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 357 2e-97 UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Ta... 357 3e-97 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 357 4e-97 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 357 5e-97 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 356 8e-97 UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6... 355 1e-96 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 355 1e-96 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 355 2e-96 UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Ta... 354 3e-96 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 352 1e-95 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 352 2e-95 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 351 2e-95 UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4... 351 2e-95 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 351 2e-95 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 350 3e-95 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 350 3e-95 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 350 3e-95 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 350 4e-95 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 348 1e-94 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 348 2e-94 UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae ... 348 2e-94 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 347 3e-94 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 347 4e-94 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 347 4e-94 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 346 4e-94 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 346 4e-94 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 346 5e-94 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 346 5e-94 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 345 1e-93 UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 345 2e-93 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 343 3e-93 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 342 1e-92 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 342 1e-92 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 342 1e-92 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 341 2e-92 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 341 2e-92 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 341 2e-92 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 340 3e-92 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 340 3e-92 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 340 6e-92 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 338 2e-91 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 338 2e-91 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 337 4e-91 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 336 6e-91 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 336 8e-91 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 335 1e-90 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 335 1e-90 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 334 2e-90 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 334 3e-90 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 332 9e-90 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 332 1e-89 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 332 1e-89 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 331 2e-89 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 331 2e-89 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 330 3e-89 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 329 9e-89 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 329 9e-89 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 326 6e-88 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 326 8e-88 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 326 9e-88 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 325 1e-87 UniRef50_A6GN92 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 325 1e-87 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 325 1e-87 UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 324 3e-87 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 323 6e-87 UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter... 323 7e-87 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 323 8e-87 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 322 8e-87 UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D... 322 1e-86 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 322 1e-86 UniRef50_Q6KHW4 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 321 2e-86 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 321 2e-86 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 319 8e-86 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 319 9e-86 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 318 1e-85 UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 T... 318 1e-85 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 318 2e-85 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 318 2e-85 UniRef50_Q8D220 Pseudouridine synthase n=1 Tax=Wigglesworthia gl... 318 2e-85 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 318 2e-85 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 317 3e-85 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 317 4e-85 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 317 4e-85 UniRef50_B6BNM7 Ribosomal large subunit pseudouridine synthase, ... 316 5e-85 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 316 5e-85 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 315 1e-84 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 315 1e-84 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 315 1e-84 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 315 2e-84 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 315 2e-84 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 315 2e-84 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 315 2e-84 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 314 3e-84 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 313 4e-84 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 313 4e-84 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 313 5e-84 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 313 7e-84 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 312 9e-84 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 312 1e-83 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 312 1e-83 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 312 1e-83 UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium t... 311 2e-83 UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veil... 311 2e-83 UniRef50_B9L8H5 Pseudouridine synthase n=1 Tax=Nautilia profundi... 311 3e-83 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 311 3e-83 UniRef50_Q30SG9 Pseudouridine synthase n=5 Tax=Epsilonproteobact... 310 3e-83 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 310 4e-83 UniRef50_C9KQC1 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 310 5e-83 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 310 6e-83 UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 309 8e-83 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 308 2e-82 UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterale... 308 2e-82 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 307 3e-82 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 307 3e-82 UniRef50_Q3AD19 Ribosomal large subunit pseudouridine synthase, ... 307 4e-82 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 306 5e-82 UniRef50_B0TDX6 Pseudouridine synthase, rlua family n=1 Tax=Heli... 306 6e-82 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 306 8e-82 UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=W... 305 2e-81 UniRef50_Q1D9A6 Pseudouridine synthase n=2 Tax=Cystobacterineae ... 305 2e-81 UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella el... 305 2e-81 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 305 2e-81 UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Meth... 304 3e-81 UniRef50_Q2GEQ1 Ribosomal large subunit pseudouridine synthases,... 303 8e-81 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 302 1e-80 UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacte... 302 1e-80 UniRef50_B0SGK3 Pseudouridylate synthase, 23S RNA-specific n=2 T... 302 1e-80 UniRef50_Q1AVY4 Pseudouridine synthase n=2 Tax=Rubrobacteridae R... 302 1e-80 UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cyst... 301 2e-80 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 301 3e-80 UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 300 4e-80 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 300 6e-80 UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B... 300 6e-80 UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sak... 299 8e-80 UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bif... 299 8e-80 UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D... 298 2e-79 UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospir... 298 3e-79 UniRef50_B6WA53 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 297 3e-79 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 297 3e-79 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 297 3e-79 UniRef50_Q4A7R4 Pseudouridine synthase n=5 Tax=Mycoplasma hyopne... 297 3e-79 UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 297 4e-79 UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 296 5e-79 UniRef50_P75485 Uncharacterized RNA pseudouridine synthase MG209... 296 6e-79 Sequences not found previously or not previously below threshold: >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 325/326 (99%), Positives = 326/326 (100%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL Sbjct: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDII+INKPRDLVVHPGAGNPDGTVLNALL Sbjct: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALL 120 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM Sbjct: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP Sbjct: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 Query: 301 IPQDMVELIEVMRADFEEHKDEVDWL 326 IPQDMVELIEVMRADFEEHKDEVDWL Sbjct: 301 IPQDMVELIEVMRADFEEHKDEVDWL 326 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 161/314 (51%), Positives = 220/314 (70%), Gaps = 1/314 (0%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A R+ L + E+ LGQR+DQ A ++ ++SR ++K+W+ + +LVNG + KPK + G Sbjct: 34 ATRLSLQVQLDESYLGQRIDQVAAMVWSEFSREKLKQWMKEGHLLVNGNIV-KPKYRCEG 92 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 E + +N E+E + +P++IPLDIVYEDEDI++INKP +VVHPGAGN T++NALL+ Sbjct: 93 NETLTLNVELEAQTNSQPENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLY 152 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + P A++ RAG+VHR+DKDT+GL+VVAK + AQ L + L + + R Y+ V G++ A Sbjct: 153 HSPKSAELSRAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIA 212 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GGT+DEPI RHP R MA+ P G+ AVTHY + E FR TR++ +LETGRTHQIRVH + Sbjct: 213 GGTIDEPIKRHPVDRVKMAILPGGRDAVTHYNVKERFRDFTRVQAQLETGRTHQIRVHFS 272 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 +I H LVGD VY R R P GASE I TLR F RQALHA L L HP +G EM + AP Sbjct: 273 YIGHGLVGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPW 332 Query: 302 PQDMVELIEVMRAD 315 P+D +L+ V+R + Sbjct: 333 PEDFTQLVNVLRTE 346 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 133/316 (42%), Positives = 186/316 (58%), Gaps = 19/316 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 ++ V+ G RLD+ LAE + SRS IK+ I + +V VNG + K KV GGE Sbjct: 3 TEIKVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNG-LHRKASYKVRGGE 61 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 +A+ E +P++IPLDIVYEDED++++NK +VVHP GN DGT++NALL++ Sbjct: 62 IIAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHC 121 Query: 124 PP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 I V R GIVHRLDKDT+GL+VVAK A L E ++ ++ REY + G++ Sbjct: 122 QNLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLK 181 Query: 181 -AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRV 238 G +D PI RHP R MAV GK A T Y+++E F + T ++ +L TGRTHQIRV Sbjct: 182 NKEGIIDLPIGRHPRDRQKMAVVSNGKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIRV 241 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H +++ HP++GDP YG + P RQ LHA L HP SG +E+ Sbjct: 242 HFSYLGHPVLGDPKYGHQNNP------------FGVKRQMLHAIKLSFIHPRSGELLEFT 289 Query: 299 APIPQDMVELIEVMRA 314 AP+P+D ++ +R Sbjct: 290 APLPEDFQRVLAKLRG 305 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 181/309 (58%), Positives = 229/309 (74%), Gaps = 1/309 (0%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 ++ T + GQRLDQALA+ +PDYSRSRI++WI +L++G+V +P+ VLGGE Sbjct: 2 HLEETLLIPPECAGQRLDQALAKCWPDYSRSRIQDWIKSGEILLDGEVA-RPRATVLGGE 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V + AEIEE PQDIPLDI+YED+ II++NK D+VVHP AGNPDGT++NALL + Sbjct: 61 SVELLAEIEEAVAAVPQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHD 120 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 P + VPRAG+VHRLDK T+G+MVVAKT+ A LVE+L R+I REY+ V +GH+ AGG Sbjct: 121 PSLVSVPRAGVVHRLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAGG 180 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 TVD PI RHP R AV GK AVTHYR+++H+ T LR++LETGRTHQIRVHMAHI Sbjct: 181 TVDAPIGRHPRDRQRQAVTATGKRAVTHYRVLQHYGEQTWLRVQLETGRTHQIRVHMAHI 240 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP++GDPVYGGRPR P AS A I LR F+RQALHA L L HP++G +M + AP+P Sbjct: 241 RHPVIGDPVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMPD 300 Query: 304 DMVELIEVM 312 DM ELI ++ Sbjct: 301 DMRELIALL 309 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 154/325 (47%), Positives = 202/325 (62%), Gaps = 8/325 (2%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 ++ TV G RLD LA++ PDYSRSR+ WI + V+VN K +PK+K++GGEQ+ Sbjct: 27 RIGLTVPLELAGGRLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDKP-SQPKDKMIGGEQI 85 Query: 66 AINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + EE F P+ + LDIVYED+ +I++NKP LVVHP AGN GT+LN LL + P Sbjct: 86 RVTVRPSEENLAFVPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCP 145 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 ++ +PRAGIVHRLDK+T+GLMVVAKT+PAQ LV LQ R + R Y AVA G + G Sbjct: 146 ELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFDGK 205 Query: 185 VDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ I R P R MAV GKPAVTH +++E + H+ + LETGRTHQIRVHM Sbjct: 206 IETQIGRDPHNRLKMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETGRTHQIRVHMREA 265 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL GDPVYG P + + +L RQALHA L HP SG + + APIP Sbjct: 266 NHPLAGDPVYGNPRHPCGDTVKEAVKSLGA--RQALHAYRLSFTHPESGETVSFEAPIPD 323 Query: 304 DMVELIEVMRAD---FEEHKDEVDW 325 D+ L+ V+R + +E +W Sbjct: 324 DIYHLLSVLRLEAGLDSSLSNEEEW 348 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 155/308 (50%), Positives = 198/308 (64%), Gaps = 7/308 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + TV +N G RLDQALA++ P +SRSR++ WI + V V+ K+KV GGE + Sbjct: 32 IELTVPDNLAGLRLDQALAQLLPQWSRSRLQGWIEQKCVSVDSAAAT-CKQKVWGGESIR 90 Query: 67 -INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 I + E + + + IPL I++ED+ +III+KP LVVHPG GN GT+LNALL++ P Sbjct: 91 VIAGQTENDQSHQAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALLNHAPQ 150 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 ++ VPRAGIVHRLDKDTTGL+VVAKT+ AQ L LQ+R + R Y A+ +G + G V Sbjct: 151 LSQVPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKDGVV 210 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D PI RHP RT MAV GKPA THYR++E F T L LETGRTHQIRVH+ I H Sbjct: 211 DAPIGRHPIHRTRMAVVQNGKPARTHYRVLEKFTASTLLHCSLETGRTHQIRVHLLSIGH 270 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL GDPVYG P A + + RQALHA L L HP SG + W +P+P DM Sbjct: 271 PLAGDPVYGRTSPDPSTAD-----AVVRLPRQALHAWQLELTHPHSGQILLWESPLPDDM 325 Query: 306 VELIEVMR 313 L++ +R Sbjct: 326 AALLQAIR 333 >UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGU8_SALAR Length = 318 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 246/271 (90%), Positives = 258/271 (95%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL+QRVLVNG++CDKPKEKVL Sbjct: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVL 60 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGE+VAI+AEI+EE RFE QDIPLDIVYED+DI++INKPRDLVVHPGAGNPDGTVLNALL Sbjct: 61 GGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALL 120 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ REITREYEAVAIGHMT Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMT 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 AGGTV+EPISRHPTKRTHM+VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM Sbjct: 181 AGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTL 271 AHITHPLVGD VYGGRPRPPK + Sbjct: 241 AHITHPLVGDQVYGGRPRPPKAHRKRLFPRC 271 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 163/307 (53%), Positives = 209/307 (68%), Gaps = 3/307 (0%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T+S + G RLD AL + P++SRSR++ WI V V+GK K KV GGE+V+++ Sbjct: 15 LTISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGK-ASTAKTKVWGGEKVSVD 73 Query: 69 AEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 +++ E+R F QDIPLDIVYED+ I+++NKP +VVHP AGN DGT+LNALL + P + Sbjct: 74 VQVKPESRAFIAQDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQLH 133 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 DVPRAGIVHRLDK+T+GL+VVAKT+ AQT LV LQ R + REY A+ G + G VD+ Sbjct: 134 DVPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLWRNGVVDQ 193 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 P+ R P RT MA++ MGKPA+T Y I+E F V T LR LETGRTHQIRVHM H+ PL Sbjct: 194 PLGRDPRSRTKMAINRMGKPAITRYEILERFSVQTYLRCNLETGRTHQIRVHMQHLKAPL 253 Query: 248 VGDPVYGGRPRPP-KGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 VGDPVYG R P + ++ + +F RQALHA L L HP + MEW + DM Sbjct: 254 VGDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQIELADDMK 313 Query: 307 ELIEVMR 313 L+E MR Sbjct: 314 VLLEAMR 320 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 154/318 (48%), Positives = 218/318 (68%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 A R++L + G RLDQ LA++FPDYSRS+++ WI V V+G K +EKV Sbjct: 6 CASRIELKKIIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVR 65 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 + + I A++E R+ PQ IPLD++YEDE +++INKP L+VHPGAG D T++NALL Sbjct: 66 ENQFIEIEAQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALL 125 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HY P ++ VPRAGI+HRLDKDT+GL+++A+T+ + L+++++ R+I REYEA+ G + Sbjct: 126 HYDPSLSVVPRAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLI 185 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 +G T++ P+ RHP RT MAV G+PA+TH+RI++ +R HT +R++LETGRTHQIRVHM Sbjct: 186 SGRTIEAPVGRHPIHRTRMAVVEFGRPAITHFRIIKRYRAHTHIRVQLETGRTHQIRVHM 245 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHI HPL GDPVYG P S+ + L+ RQALH L+ HP+ M HAP Sbjct: 246 AHIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAP 305 Query: 301 IPQDMVELIEVMRADFEE 318 +P DM L+E + D+ + Sbjct: 306 LPADMAHLLECLEDDYSQ 323 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 165/310 (53%), Positives = 216/310 (69%), Gaps = 1/310 (0%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 TV + G+R D LAE+FP++SRSR+ EWI VL+NG + +P++ V GGE V Sbjct: 13 SRQTTVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNGVLV-RPRDPVYGGEVV 71 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + PQDIPLDI+YEDE + +INKP LVVHPGAGNPDGT++NALLH P Sbjct: 72 WLQVMPDIRTDAVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPA 131 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 +A VPRAG+VHRLDKDT+G+MVVA+T+ AQT LVE L R++ R+Y AV + + +GGTV Sbjct: 132 LAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTV 191 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 + I RHP R M V GK AVTHYR+ E FR HT L RL+TGRTHQIRVHMAH+ H Sbjct: 192 NAAIERHPRDRLRMEVSDTGKEAVTHYRLRERFRAHTALECRLDTGRTHQIRVHMAHLRH 251 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD +YGG + PKG ++A ++ LR F RQALHA +L HP+ + + AP+P+D+ Sbjct: 252 PIVGDRLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDL 311 Query: 306 VELIEVMRAD 315 +L+ +R D Sbjct: 312 CQLLAALRED 321 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 177/320 (55%), Gaps = 22/320 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M R+ V E G RLD+ L+ D SRSR ++ I ++ V ++ K KV Sbjct: 1 METRI---LIVEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPV-KNSYKVK 56 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+++ + EE +PQ++ L++VYED D+I+INKP+ LVVHPG GNPD T++N LL Sbjct: 57 AGDEIEVTLPEEEALEAQPQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLL 116 Query: 121 HYYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + ++ + R GIVHR+DKDT+GL+V K A L + L + R+Y A+ G Sbjct: 117 WHCHDLSGINGVLRPGIVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHG 176 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 + GT+D PI R R MAV +PA+TH++++E F +T + RLETGRTHQ Sbjct: 177 VINHEYGTIDAPIGRDEKDRQKMAVTEKNSRPAITHFKVVERFDNYTLVSCRLETGRTHQ 236 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVHM +I P+VGDP Y R P Q LHA L HP +G M Sbjct: 237 IRVHMQYIGFPIVGDPKYSLRKTLPTQG-------------QMLHAYQLSFTHPSTGERM 283 Query: 296 EWHAPIPQDMVELIEVMRAD 315 + AP+P + L+ +R + Sbjct: 284 TFEAPLPPEFEALLTQLRQE 303 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 135/315 (42%), Positives = 188/315 (59%), Gaps = 17/315 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T + +Q G+RLD+ L M P SR+ +++ I + + LV+G K K+ GE+V Sbjct: 5 TKVYTADQDGERLDRFLTRMEPTLSRAHVQKVIAEGQALVSG-RVRKANYKLQAGEKVTF 63 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + + P+DIPLDI+YED DII+INK R +VVHP G GT++NALL++ ++ Sbjct: 64 HLPEAKPVEILPEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCKDLS 123 Query: 128 DVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 + R GIVHRLDKDT+G+MV AK A L E ++ + R Y A+ G++ G Sbjct: 124 GINGEIRPGIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAG 183 Query: 184 TVDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 + I RHPT R MA VH GKPAVTH+R++E F +T + RLETGRTHQIRVHMA Sbjct: 184 VIKGDIGRHPTDRKKMAIVHEHGKPAVTHFRVLERFGAYTLVECRLETGRTHQIRVHMAS 243 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HP++GDP YG R P QALH+ L L HP + M + AP+P Sbjct: 244 IGHPVLGDPKYGPRKACP-----------FAIKGQALHSLQLTLTHPRTREVMTFTAPLP 292 Query: 303 QDMVELIEVMRADFE 317 +DM ++++ +RA F+ Sbjct: 293 EDMEKILKALRAKFQ 307 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 402 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 129/309 (41%), Positives = 179/309 (57%), Gaps = 5/309 (1%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V+ + G RLD LA +SR+R++ I RV ++GK + +K+ G+ V + Sbjct: 12 VTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQKLRTGDIVMLEEP 71 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IA 127 PQDIPL I+YED D+++++KP LVVHP AG+ GT++NALL + I Sbjct: 72 PATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDLAGIG 131 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVD 186 V R GIVHRLDKDT+GL+VVAKT A L ++ ++ + Y+A+ G G +D Sbjct: 132 GVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKTGQID 191 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 P+ RHP +R M+ GK A T +RI E F V T L + + TGRTHQIRVH+A I H Sbjct: 192 LPVGRHPVERKKMSTKSRRGKEAATRWRIAERFGVATLLNVDIVTGRTHQIRVHLAAIGH 251 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD VYG R A L++ RQALHA L HP++ +E+HAP+P DM Sbjct: 252 PVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPLPADM 311 Query: 306 VELIEVMRA 314 +L +R Sbjct: 312 EDLCAFLRK 320 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 150/308 (48%), Positives = 198/308 (64%), Gaps = 1/308 (0%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V N RLDQ LA +P++SR+R ++ I VL+NG K K V G+Q+ Sbjct: 10 INFIVDHNNHALRLDQVLARNYPEFSRNRWQDAINAGTVLLNGA-AAKSKSLVCAGDQIT 68 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 E + Q++PL+I+Y D+DII+INKP LVVHP GN D T+LNALL+++P Sbjct: 69 GVLTQEIQTEDSAQNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQT 128 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 +PR+GIVHRLDKDT+G MV+A + A T LV LQ R + R Y A+ G++TAG T+D Sbjct: 129 KHLPRSGIVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTID 188 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI RH R MAV P GKPA+THYRI E ++ T LR++LETGRTHQIRVH++H HP Sbjct: 189 LPIGRHAKDRLKMAVRPDGKPAITHYRIEERWQTLTLLRVQLETGRTHQIRVHLSHHRHP 248 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 LVGD +YG RP +E L +F RQALHA L L+HP + M + AP+P DM Sbjct: 249 LVGDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMT 308 Query: 307 ELIEVMRA 314 +L ++RA Sbjct: 309 QLFTILRA 316 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 157/300 (52%), Positives = 199/300 (66%), Gaps = 9/300 (3%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 GQRLDQ LA + +SRSR+++WI + RV V G V +P+ ++ GGE +A+ +E A Sbjct: 39 GQRLDQVLARLLSQHSRSRLQDWIREGRVAVGGAVTVEPRFRLWGGETIALTESTDERAE 98 Query: 77 F-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIV 135 P++IPL IV+ED+ +I+++K LVVHPG+GN GT+LN LLH+ P +A VPRAGIV Sbjct: 99 ASAPEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLARVPRAGIV 158 Query: 136 HRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTK 195 HRLDKDTTGLMVVAKT+ AQT LV LQ R + R Y+A+ G + G VD PI RHPT Sbjct: 159 HRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGAGIVDAPIGRHPTV 218 Query: 196 RTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 RT MAV G+PA THYR++E F T + LETGRTHQIRVHM I HPLVGDP+YGG Sbjct: 219 RTRMAVVSGGRPARTHYRVLERFVACTLIECALETGRTHQIRVHMTSIAHPLVGDPIYGG 278 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 + + F RQALHA L L HP SG M W + +P DM LI+ +R + Sbjct: 279 GA--------SRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADMAALIDRLRLE 330 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 136/322 (42%), Positives = 198/322 (61%), Gaps = 7/322 (2%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 ++ R + G+R+D A+ E F +SR++I++W+ + + VNG KPK VL Sbjct: 6 LSNRFHQNIIMHPKDAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNG-RATKPKHIVL 64 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G E+V IN E+ + +DI L I++ED+DII+I+KP +++VHPGAGNP GTV NALL Sbjct: 65 GDEEVEINIELLPTNEWIAEDINLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALL 124 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 H Y +PRAGIVHRLDKDT+GLMV AK+ A LV+ L R+++R+Y A+ G + Sbjct: 125 HRYKDQDKLPRAGIVHRLDKDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIY 184 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GT+++PI R PT RT MA++ GK A+T+Y +E + T + +LETGRTHQIRVHM Sbjct: 185 QQGTINQPIGRDPTNRTKMAINYRGKEAITYYTPIEVYDGFTLIECQLETGRTHQIRVHM 244 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 I HPLVGD Y K +++ + RQALHA L HP + +++ + Sbjct: 245 KSIKHPLVGDQTY------NKSSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSK 298 Query: 301 IPQDMVELIEVMRADFEEHKDE 322 +P+DM+ L + E ++ Sbjct: 299 LPEDMLNLKAQLEQTVEMLDED 320 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 139/315 (44%), Positives = 204/315 (64%), Gaps = 5/315 (1%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A V TV++ Q GQR+D+ A+MF ++SR+++++W+ + VN +K K +V Sbjct: 100 ALEVSELHTVTQEQAGQRIDKLAADMFTEHSRAQLQDWLKSGNLTVNDH-NEKAKYRVKI 158 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ V + A++E+ +P+DI LDI+YED+ +I+INKP +VVHPGAGN GT++N LL+ Sbjct: 159 GDIVRLEAKLEQHGSDQPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLY 218 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH--- 178 +YP A +PRAG+VHR+DK+T+GL+V+ KT AQ L E L+ + + R Y+ V G Sbjct: 219 HYPNQAHLPRAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPS 278 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHY-RIMEHFRVHTRLRLRLETGRTHQIR 237 + T+D PI RH T+RT M V GK A+TH +I ++ L +RLETGRTHQIR Sbjct: 279 LARQRTIDAPIGRHRTQRTKMTVTSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQIR 338 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH++HI HP++GD +YG R + G + ++ F RQALHA L HP +G +E Sbjct: 339 VHLSHIGHPIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIEL 398 Query: 298 HAPIPQDMVELIEVM 312 AP+PQD+VEL + Sbjct: 399 TAPLPQDIVELAHTL 413 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 15/316 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V Q +R+D+ LA PD SR++++ I VL +G + + V G + Sbjct: 14 ERVVVVPPTQTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDG-RSPRASQPVRPGAVI 72 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + IPLD+VYED DI +INKP +VVHP G+P GT++NALL YP Sbjct: 73 QLTIPPPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPD 132 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 I R GIVHRLD+DT+GL+V+A+ A LV+ Q R + + Y+A+ IG G Sbjct: 133 LAIGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETG 192 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 T+D PI R P R MAV P G+PA THYR+++ F ++ L ++LETGRTHQIRVH+ H+ Sbjct: 193 TIDAPIGRDPRDRLRMAVVPDGRPARTHYRLLDTFGDYSLLEVQLETGRTHQIRVHLRHL 252 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 +P+VGDPVYG R + RQ LHA L L HP SG E+ AP+P Sbjct: 253 GYPIVGDPVYGPR------------RSHLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPA 300 Query: 304 DMVELIEVMRADFEEH 319 D+ ++ ++ H Sbjct: 301 DLQIVLRQLQDRASYH 316 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 175/324 (54%), Gaps = 19/324 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + TV+ + R+D L + SRS + WI + V ++G K ++ G+ + Sbjct: 36 VRLTVTPAEADSRVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPL-KANYRLRPGDVIE 94 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---Y 123 + E P+DIPL+I+++D DI +INKP LVVHP G+ GT++NALL++ Sbjct: 95 VAPPAPEAVEILPEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDL 154 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 I R GIVHR+DKDT+GL+VVAK A L E ++ + REY AV G + Sbjct: 155 SGINGELRPGIVHRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAET 214 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 240 G V+ PI R P R MAV GK A+TH+R++ + + + L RLETGRTHQIRVH+ Sbjct: 215 GRVEAPIGRDPKDRQRMAVIAGGKSAITHFRVLARYPEQGFSLLHCRLETGRTHQIRVHL 274 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHI HP+ GDP YG R QALHA L HP SG M + A Sbjct: 275 AHIGHPVAGDPKYGPR------------KAAFGLTGQALHAWKLEFVHPRSGEPMRFQAD 322 Query: 301 IPQDMVELIEVMRADFEEHKDEVD 324 P+ V++++ ++ +D+ + Sbjct: 323 PPEPFVQVLQALQMTPTNQRDQAN 346 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 131/319 (41%), Positives = 184/319 (57%), Gaps = 8/319 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 T + +RLD+ L E P+ SRS++K+ I D RVL++G KP K+ GGE + Sbjct: 5 FTLCFGRERSPERLDRFLVEQLPELSRSQLKKLIDDGRVLLDGA-AAKPGSKLKGGETLT 63 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 ++ A +DIPL I+YED +I+I+KP +VVHP G+ GT++NALLH+ Sbjct: 64 VDVPDPSPAEAVSEDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDL 123 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 I R GIVHRLDKDT+G+MV KT A L + ITR Y A+ G +T Sbjct: 124 SGIGGELRPGIVHRLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDR 183 Query: 183 GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVH 239 G++D PI RHPT R M+ G+ AVTH+R++ F T + L LETGRTHQIRVH Sbjct: 184 GSIDRPIGRHPTHRKKMSTTCRTGRHAVTHWRVLRRFDDDRLTLVELALETGRTHQIRVH 243 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + HPL+GDPVYGG R + + RQALHA +L HP +G +E+ + Sbjct: 244 FSEQQHPLLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSS 303 Query: 300 PIPQDMVELIEVMRADFEE 318 P+P+D+ +I+ + + + Sbjct: 304 PLPEDLRSVIDYLTEKYGQ 322 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 130/315 (41%), Positives = 189/315 (60%), Gaps = 16/315 (5%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 + ++L +SE + G+RLD+ +A SRS +++ + +LVNG+ C KP ++V G Sbjct: 7 EAIRLVLQISEREHGERLDKLIASRVTGMSRSFVQQLMKRGAILVNGEPC-KPAQRVRYG 65 Query: 63 EQVAINAEI-EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 +++ + E EP+ +P+ ++YED+DII+ +KP +V HP G+ GT++NAL Sbjct: 66 DRLEVYLPPVEPPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKA 125 Query: 122 YYPPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 P + P R GIVHRLDKDT+GL+VVAKT A+ L+E Q R + ++Y A+ G + Sbjct: 126 IRPDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVV 185 Query: 180 -TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 GT+D PISR P +RT MAV G+PA+TH+R++E FR T L + +ETGRTHQIRV Sbjct: 186 EPDSGTIDAPISRDPVERTKMAVVSWGRPAITHFRVLERFRCATLLDVTIETGRTHQIRV 245 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H A I HP+VGD YGG RQ LHA LR HP +G +E Sbjct: 246 HCAFIGHPVVGDSQYGGHR-----------PFCVPVPRQFLHARYLRFVHPTTGQAIELE 294 Query: 299 APIPQDMVELIEVMR 313 P+P D+ ++E +R Sbjct: 295 TPLPYDLRTVLEALR 309 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 135/318 (42%), Positives = 185/318 (58%), Gaps = 12/318 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT + + GQRLD+AL FPD +RS ++ WI ++RV+V+ +V P +KV G+ + Sbjct: 10 LTTLLHADDAGQRLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHII 69 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---- 122 I E + P++I L+I++EDE +I++NKP +VVHPGAG GT++NALL++ Sbjct: 70 IYPSEPEPSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTP 129 Query: 123 ------YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 I V R GIVHRLDK+T+G+MV AK A L ++R I R Y A+ Sbjct: 130 DNPHGGLSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTR 189 Query: 177 GHM-TAGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 G A G ++ I RHP RT MAV G+ A T Y+++E +R RLE+GRTH Sbjct: 190 GIPQPAQGRIEGAIGRHPIHRTKMAVVEQGGRAAATRYKVLEPLGQFALIRCRLESGRTH 249 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM HI HPLVGDP+YG + + P +F RQALHA L HP +G E Sbjct: 250 QIRVHMTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEE 309 Query: 295 MEWHAPIPQDMVELIEVM 312 M + P P D +L E + Sbjct: 310 MSFKRPPPADFRQLYETL 327 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 181/316 (57%), Gaps = 23/316 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + +V G+R+D+ L+ +YSRS +K I + +V V GK K KV G ++ Sbjct: 23 IELSVVSEDSGERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPV-KSSFKVTEGINIS 81 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 I+ +EA P++IPLDI+YEDED+I+INKP+ +VVHP AG+ GT++NAL+++ Sbjct: 82 ISIPPVKEAEIIPENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDN 141 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 I R GIVHR+D DTTG+++ K + + E L+ I R+Y+A+ G Sbjct: 142 LSGINGELRPGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDE 201 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-----RVHTRLRLRLETGRTHQI 236 G ++ I R T R MAV P GKPAVTHYR++ ++ + LETGRTHQI Sbjct: 202 EGRIEGSIGRSKTDRKKMAVIPDGKPAVTHYRVIRNYTSPNGNNFAHIECELETGRTHQI 261 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM I HPL+GD +YG P K D QALHA ML HP +G ME Sbjct: 262 RVHMTSIGHPLLGDEIYGAAKNPFK------------LDGQALHAEMLGFVHPRTGEYME 309 Query: 297 WHAPIPQDMVELIEVM 312 +HAP+P+ +L+ + Sbjct: 310 FHAPLPEYFSKLLTKL 325 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 146/322 (45%), Positives = 204/322 (63%), Gaps = 5/322 (1%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + +Q +V QR+D LA + P+YSRS I WI V +N C KPK+K L Sbjct: 1 MIEHIQQQLSVPRELHNQRVDSVLARLLPEYSRSLICNWIKTGAVTLNNLPC-KPKDKAL 59 Query: 61 GGEQVAINAE----IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 GG+ + IN + +P++IP+ I+YED ++I++NKP LVVHPGAGN + T++ Sbjct: 60 GGDLITINVNHTIVNTDFNLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLV 119 Query: 117 NALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 NALLH+ P + +PRAGI+HRLDKDTTGL++VAK + + T L+ +Q REI R Y + Sbjct: 120 NALLHHCPELQLLPRAGIIHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVH 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G++ +GGT+D RHP R MAV G+ AVTHY I +H++ T L + L TGRTHQI Sbjct: 180 GYVISGGTIDTGFGRHPKNRLKMAVTDFGRQAVTHYNINKHYKDFTLLNVSLMTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM +I HP+VGD +YGGR + P A EA +S L++F RQALHA + HP+ E+ Sbjct: 240 RVHMNYINHPVVGDQLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEIT 299 Query: 297 WHAPIPQDMVELIEVMRADFEE 318 +A +P D L+ + E+ Sbjct: 300 LNALLPDDFELLLNTLDQHDEK 321 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 186/312 (59%), Gaps = 18/312 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 VS + G+R+D+ L+++ D SRS I++ I + +VLVNG+ + KV G+ + + Sbjct: 10 VSSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESVKR-SFKVNRGDHIRLIIP 68 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIA 127 E++ +P ++ LDI+YED+DI+++NK LVVHP GN + T++NAL+ Y I+ Sbjct: 69 PPEDSGIKPVEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLSTIS 128 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 V R GIVHRLDKDT+G+MV+AK + +LVE ++R+ + Y + G + G +D Sbjct: 129 GVNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGKID 188 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI R P R MAV K AVT+++++E FR H+ + + L+TGRTHQIRVH +++ Sbjct: 189 APIGRDPHDRKKMAVTRKNSKKAVTYFKVLEFFRDHSYVEVELKTGRTHQIRVHFSYMGF 248 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD +YG + + RQ LHA L YHP + +E+ A +P D Sbjct: 249 PVVGDSIYGKKRNRLQAT------------RQLLHAYRLGFYHPRNDKWVEYKASLPDDF 296 Query: 306 VELIEVMRADFE 317 + ++++ F+ Sbjct: 297 KKALDILENKFK 308 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 392 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 157/306 (51%), Positives = 210/306 (68%), Gaps = 1/306 (0%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ + +GQR+D A+A+M P+YSR +I WI L++ K KPKEKVLGGE + Sbjct: 4 LSVIIPNRFIGQRIDAAMAQMLPNYSRVKITYWIKSGDALIHHK-TFKPKEKVLGGEVIT 62 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 ++ +IE+ + QDI +D+VYEDE III+NKP +LV HPG N GT+ NALLHY + Sbjct: 63 LSIKIEKTNAWLAQDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSL 122 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 A++ RAGIVHRLDK+T+GLMVVA++ AQ L LQ I+REY A+ GHM +GGTVD Sbjct: 123 ANLDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISGGTVD 182 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 +PI R P R V GK A+THYR++E F HT +++ LETGRTHQIRVH++ I HP Sbjct: 183 KPIGRDPKDRIRQTVTESGKDALTHYRVIERFAHHTHVKVMLETGRTHQIRVHLSFIGHP 242 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+ DP+YGG+ R PK A + ++L+ F+RQ LHA L L HP S M W P+PQDM Sbjct: 243 LIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQDMQ 302 Query: 307 ELIEVM 312 +L++V+ Sbjct: 303 DLLQVL 308 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 146/316 (46%), Positives = 195/316 (61%), Gaps = 9/316 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + E G+RLD+ALA++ PDYSRSR+++WI V V G +P+ V GG+++ Sbjct: 39 IIVEIPEALHGERLDKALAKLLPDYSRSRLQQWIDAGAVRVGGAAV-RPRAAVCGGDRIE 97 Query: 67 INAE-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + ++E F + + LD+VYED+ +++INKP LVVHP AGN GTVLN LLH YP Sbjct: 98 VVPQRADDENAFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQ 157 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 A +PRAGIVHRLDK+T+GLMVVA+T+PAQT LV LQ R + R Y A+ G GT+ Sbjct: 158 AAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTI 217 Query: 186 DEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFR----VHTRLRLRLETGRTHQIRVH 239 D PI R P RT MA+ GKPA TH++ ++ + ++ +LETGRTHQIRVH Sbjct: 218 DAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVH 277 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 HPL+GDPVY R F RQALHA L L HP SG + WHA Sbjct: 278 FESEGHPLLGDPVY-TRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHA 336 Query: 300 PIPQDMVELIEVMRAD 315 +P D+ EL++ + D Sbjct: 337 GVPDDLAELMDALEMD 352 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 177/310 (57%), Gaps = 18/310 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 TV E RLD LA P+ SR+RI++ I + V VNG+ + +V GG+ V + Sbjct: 6 RYTVEEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRPA-RASHRVRGGDCVEL 64 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E R EP+ IPL++ +ED D++++NKPR LVVHP G+ GT++NALLH+ ++ Sbjct: 65 KVPDPETPRIEPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLS 124 Query: 128 DVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGG 183 + R GIVHRLD+DT+GL++VAK A L L+ R + R Y A+ G G Sbjct: 125 GINGILRPGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETG 184 Query: 184 TVDEPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 TVD PI RHP R MAV P G+ A THYR++ F + L L L+TGRTHQIRVHMAH Sbjct: 185 TVDAPIGRHPRDRQRMAVTPRSGRAARTHYRVVRRFDKFSLLELTLDTGRTHQIRVHMAH 244 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HPLVGD YG + Q LHA L HP +G + + AP+P Sbjct: 245 VGHPLVGDLKYGHARPE------------LGLEGQFLHAGTLGFRHPRTGEVLVFEAPLP 292 Query: 303 QDMVELIEVM 312 ++ ++E + Sbjct: 293 SELAAVLERL 302 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 144/314 (45%), Positives = 197/314 (62%), Gaps = 3/314 (0%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + G RLD L+ + P++SRS+I+ I + + +NG + KV+GGE++ I Sbjct: 9 KLIIPATFFGSRLDAVLSNLVPEFSRSKIQSMIKNDLIFLNGSHVSQ-NYKVVGGEEIVI 67 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 N IE+E ++I LDIVYED+DI+++NKP +LVVHPG+GN +GT+LN LL+Y + Sbjct: 68 NGVIEDEIDVIAENISLDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLE 127 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 +PR GIVHRLDKDTTGLMVVAK +Q L+ LQ + + REY A+ G + + + Sbjct: 128 KLPRGGIVHRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNKVIQK 187 Query: 188 PISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI RHP +RT MAV GK A T I+E F HT +R L+TGRTHQIRVHM P Sbjct: 188 PIGRHPRQRTKMAVTKVNGKDAETKLEILERFNYHTYVRCLLKTGRTHQIRVHMLDNNSP 247 Query: 247 LVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 +VGD YG + P K + +++ FDRQALHA L L HP + EM+W +P+DM Sbjct: 248 IVGDKDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDM 307 Query: 306 VELIEVMRADFEEH 319 EL+ V+R D E+ Sbjct: 308 KELLSVIRKDSVEN 321 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 131/312 (41%), Positives = 169/312 (54%), Gaps = 20/312 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T + RLDQ LA P+ SRSRI+ I VLVNG KPK V G+ + + Sbjct: 3 LTTDDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPA-KPKNPVSRGDSITVR 61 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--- 125 E A +PQDIPLDI+YEDED+++INK +VVHP AGNPDGT++NALLH+ Sbjct: 62 IPEPEPAEAQPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDLSG 121 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 I V R GIVHRLDKDT+G +V+AK A L R + Y AV G + GT Sbjct: 122 IGGVERPGIVHRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGT 181 Query: 185 VDEPISRHPTKRTHMAVHP--MGKPAVTHYRIM--EHFRVHTRLRLRLETGRTHQIRVHM 240 V I RHP R MAV GK A+T Y ++ + + + L TGRTHQIRVHM Sbjct: 182 VFTHIGRHPVNRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQIRVHM 241 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 ++ HPL+GDP+Y R K R LHA L HP +G M++ AP Sbjct: 242 LYLGHPLIGDPIYAKPARQK-----------AKPGRLMLHAWRLGFDHPRTGKRMDFEAP 290 Query: 301 IPQDMVELIEVM 312 +P + +++ Sbjct: 291 VPPEYTPWLQLF 302 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 128/332 (38%), Positives = 183/332 (55%), Gaps = 22/332 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 + + E L QRLDQ LA+ + D SRSR++ I + + ++G+ +PK K+ + Sbjct: 1 MVIQKVTDEGALDQRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQ 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + +A + I LDI+YED+ +I+INKP LVVHPG GN GT++NAL+++ Sbjct: 61 IIELEMPNLRDAEPSAEAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHC 120 Query: 124 PP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVA 175 I V R G+VHRLDK+T+G+MVVAK A L + R Y A+ Sbjct: 121 GNSLSGIGGVKRPGVVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALI 180 Query: 176 IGHMTAG-GTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-------TR 223 G T+D + R P RT AV P + AVTH+ ++E + H + Sbjct: 181 WGTPHRNVWTIDASLGRSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFASL 240 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHAT 282 L RLETGRTHQIRVHMAHI HPL+GD VYG + + + + +F+R ALHA Sbjct: 241 LECRLETGRTHQIRVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAA 300 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 L HP SG + + AP+PQDM +LI+ ++ Sbjct: 301 SLTFEHPSSGKVISFSAPLPQDMAQLIKHLKK 332 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 134/328 (40%), Positives = 182/328 (55%), Gaps = 13/328 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + S+ Q R+D+ L + +R++I++ + + VN V K KV G+Q+ Sbjct: 54 HFSFIASKGQEPLRIDKYLMNFIENATRNKIQQAAKEGHIWVNDLVV-KQNYKVKAGDQI 112 Query: 66 AINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E P+DIPLD+VYED D++++NKP +VVHPG GN GT++NALL + Sbjct: 113 KVMFTHPPYEFLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVK 172 Query: 125 --PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 P+ R G+VHR+DKDT+GL+VVAKT A T L + + REY A+ G++ Sbjct: 173 DLPLNADERPGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEE 232 Query: 183 -GTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 GTV I RHP R MAV P GK AVTHY++ME T + LETGRTHQIR Sbjct: 233 QGTVRGHIGRHPKNRLQMAVFPDGDQGKEAVTHYKVMERLGYVTLVSCVLETGRTHQIRA 292 Query: 239 HMAHITHPLVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 HM HI H L D YGG + + + + RQALHA L HP SG Sbjct: 293 HMKHIGHTLFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGEL 352 Query: 295 MEWHAPIPQDMVELIEVMRADFEEHKDE 322 M ++ PIP+DMV IE RA + +H+ E Sbjct: 353 MRFNTPIPEDMVLCIEKWRA-YAQHQQE 379 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 132/319 (41%), Positives = 202/319 (63%), Gaps = 8/319 (2%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + ++ TV+ Q+G+R+D+ A +F DYSR +IK W+ + VNG KPK ++ Sbjct: 62 SHQIIQNYTVNSEQIGERIDKIAALVFSDYSREQIKNWLESGELTVNGA-AQKPKYRLKP 120 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + + A + + + P++IPLDI+YEDE +++INKP LVVHPGAGN GT++NALL Sbjct: 121 NDMLVLKASLTAQQQDLPENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLF 180 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA---IGH 178 +YP +PRAG+VHR+DK+T+GLMV+AK +Q L+ L+ + + R Y+A+ Sbjct: 181 HYPDSRTLPRAGLVHRIDKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAE 240 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIM-EHFRVHTRLRLRLETGRTHQIR 237 + T+D PI RHPT+RT MAV GKPAVTH + + + +RLETGRTHQIR Sbjct: 241 LARHRTIDAPIGRHPTQRTKMAVVSSGKPAVTHLEKITAISDAVSLVSVRLETGRTHQIR 300 Query: 238 VHMAHITHPLVGDPVYGGRPRPP---KGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 VH++++ PL+GDP+YG + K + +++F RQALHA L HP +G Sbjct: 301 VHLSNLGFPLLGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEP 360 Query: 295 MEWHAPIPQDMVELIEVMR 313 ++ A +P+DM +L++ ++ Sbjct: 361 IKVQARLPEDMQQLLDTLK 379 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 176/313 (56%), Gaps = 8/313 (2%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V + GQRLD + + SR+ I V V+ K KP + GE V++ Sbjct: 9 FKVQNKEQGQRLDAFVPVHCKNLSRNACARLIRQGLVTVD-KSVKKPSYVLKPGEMVSVT 67 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--- 125 E A QD+ L I+YED DI+ +NKP +VVHP G+ T++NALL + Sbjct: 68 VPEPETADIVAQDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLAHCKDLSG 127 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GT 184 I V R GIVHRLDK+T+G+++ AK A L E L +R + + Y A+A G + G Sbjct: 128 IGGVQRPGIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKEDTGV 187 Query: 185 VDEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 +D P++RHP+ R M V G+ A++ + + E F T ++++++TGRTHQIRVH+A Sbjct: 188 IDLPLARHPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIKTGRTHQIRVHLAA 247 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HP++GD VYGGR + + + +RQ LHA ++ HP++G ++ AP+P Sbjct: 248 LHHPVIGDTVYGGRKKRGRLPASVLGKAPPP-ERQMLHAHIVSFTHPVTGEKLTLTAPLP 306 Query: 303 QDMVELIEVMRAD 315 QDM +L+E +R Sbjct: 307 QDMAQLLEALRES 319 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 176/320 (55%), Gaps = 14/320 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 +T VS+ Q R+D+ L + + +R++++ I + RVLVNGK K +V + + Sbjct: 1 MTLDVSKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPV-KSNYRVKSCDHIH 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + P+DIP+ I+YED+D+++I+K +VVHP GN GT+ NA+LH+ Sbjct: 60 LTFLRPPAPELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKD 119 Query: 127 ADVP-----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 AD R GIVHRLDKDT+GL+++AK A +L R++ + Y+A+ G Sbjct: 120 ADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKA 179 Query: 181 AGGTVDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 GT+ I R R MA P GK A+T Y+++E + + + L TGRTHQI Sbjct: 180 ESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGG---RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 RVH+ H+ H ++GD YGG R P + + L RQALHA LR P +G Sbjct: 240 RVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGE 299 Query: 294 EMEWHAPIPQDMVELIEVMR 313 + + AP+P+DM ++E +R Sbjct: 300 PLSFSAPLPEDMELVLEKIR 319 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 169/305 (55%), Gaps = 19/305 (6%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE 72 G+RLD+ +A+ D SRS I+ I V VNGK KP K+ G+ + I E Sbjct: 10 AESDGERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTA-KPSLKLKNGDTITIEISPE 68 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP-- 130 + +DIPL+I+++D+D+++INKP L VHP G+PD T++N +L P + D Sbjct: 69 TPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPKMEDFDDP 128 Query: 131 -RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEP 188 R GIVHRLDKDT+GL++VAK L + R + + Y + G + A G ++ P Sbjct: 129 LRPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAP 188 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 + R P R +AV G+ A T Y+++ + + ++ L ++LETGRTHQIRVH A I HP+ Sbjct: 189 LGRDPQNRQKIAVVSNGRHARTGYKVLRYIQGYSLLEVKLETGRTHQIRVHFAAIGHPVA 248 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD +YG + RQ LHA L P +G +E+ +P+P D+ E Sbjct: 249 GDAIYGQKETW--------------LKRQFLHAHRLSFTLPSNGQTVEFTSPLPPDLEET 294 Query: 309 IEVMR 313 ++++ Sbjct: 295 LKILE 299 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 133/312 (42%), Positives = 183/312 (58%), Gaps = 14/312 (4%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVN--GKVCDKPKEKVLGGEQVA 66 T++E +G RLD+ALA + SR R+K I V N G + P K+ + Sbjct: 6 VTLTEEMIGWRLDRALASLITRLSRERLKNLISSGCVS-NSQGALVRDPAFKIKSLDCFT 64 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---- 122 ++ + A EPQDIPL+IV+EDE ++++NKP +VVHP AGN D T++NALL++ Sbjct: 65 VDIPLPRPAHNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAGK 124 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 I V R GIVHR+DKDT+GL+VVAKT PA L I R Y A+ GH + Sbjct: 125 LSGIGGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSLQ 184 Query: 183 GTVDEPISRHPTKRTHMAVHPM--GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G VD P++R R MA+ GK AVTHYR++ + + + RLETGRTHQ+RVHM Sbjct: 185 GHVDAPLARSSVNRQKMAIVSDGRGKRAVTHYRMITPLKNASLIECRLETGRTHQVRVHM 244 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + I H L+GDPVYG + ++ F RQALHA L HPISG ++++ A Sbjct: 245 SSIGHSLLGDPVYGRSKKAHHALLQSL-----AFQRQALHAAHLGFIHPISGKQVDFDAE 299 Query: 301 IPQDMVELIEVM 312 +PQDM L +++ Sbjct: 300 MPQDMQLLFKML 311 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 137/350 (39%), Positives = 173/350 (49%), Gaps = 37/350 (10%) Query: 3 QRVQLTATVSENQ-LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 Q V + V G RLD LA SR++I+ I + RV VNG V KP V Sbjct: 4 QEVCIQLEVPPGYREGGRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQP 63 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ + + P+ IPLDIVYED +I++NK LVVHP GN GT++NALL+ Sbjct: 64 GDVITLRILRPPPVEIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLY 123 Query: 122 YYPP-----------------------------IADVPRAGIVHRLDKDTTGLMVVAKTV 152 Y + PR GIVHRLDKDTTGL+VVAK Sbjct: 124 YIGSGPVRFDEEDDLPEDDEIGLSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDD 183 Query: 153 PAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPM--GKPAV 209 T L + R I R Y A+ G G ++ I R P R MAV P GK AV Sbjct: 184 VTHTGLARQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAV 243 Query: 210 THYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP----RPPKGASE 265 THY ++E +R +LETGRTHQIRVH HI HP++GDP YGGR Sbjct: 244 THYEVVEALPAAALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRA 303 Query: 266 AFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 + + RQALHA L HP +G +E+ AP+P+DM +E +R D Sbjct: 304 FYDQLFARLTRQALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQD 353 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 172/316 (54%), Gaps = 24/316 (7%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V + + G R+D+ L+E + +R+RI++ I D+ +LVN K KP K+ + + + Sbjct: 26 IVVLKEEAGSRIDKFLSERL-ELTRTRIQQLIKDENILVNEKK-TKPAYKIEENDTIKVV 83 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 E +P++I ++I+YED D+ +INK +VVHP G+ GT++NA+L++ ++ Sbjct: 84 IPELETVEIKPENIDIEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILYHIKDLSG 143 Query: 129 VP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 + R GIVHRLDKDT+GL+++AK A +L + + + + Y A+ G + G Sbjct: 144 INGEIRPGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGR 203 Query: 185 VDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 + I R R M V GK A+T+Y ++ T +++ +ETGRTHQIRVHM Sbjct: 204 IVTQIGRDKNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKVHIETGRTHQIRVHMK 263 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H+ +P++GD VYG RQ LHA L HPI+ +E+ A + Sbjct: 264 HLGYPILGDSVYGRTDTE---------------KRQMLHAYKLEFQHPITEENLEFIAKL 308 Query: 302 PQDMVELIEVMRADFE 317 P+D + ++ +FE Sbjct: 309 PEDFKKALKKCGLEFE 324 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 129/318 (40%), Positives = 178/318 (55%), Gaps = 24/318 (7%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 Q+++ G RLD + E SRS I+ I + VLVNG K KV Sbjct: 33 QKMEFRL-----AEGTRLDVGVTERV-GKSRSFIQGLIEEGHVLVNGA-ARKANYKVRAM 85 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 +Q+A+ E + E ++IPL+I+YEDED++++NK + +VVHP G T++NALL++ Sbjct: 86 DQIAVVIPPPRELKVEAENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYH 145 Query: 123 YPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 ++ + R GIVHR+DKDT+GL+VVAK A L E ++ + R Y A+ G + Sbjct: 146 CRNLSGINGVLRPGIVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVV 205 Query: 180 -TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 GTV+ PI R P R MAV K AVTHY ++E FR T L RLETGRTHQIR Sbjct: 206 FEPSGTVEAPIGRDPADRKKMAVVFQNAKEAVTHYEVLERFRDFTLLEARLETGRTHQIR 265 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHMA++ HP++GDP+YG R P Q LHA +L HP SG ME+ Sbjct: 266 VHMAYLKHPVLGDPLYGPRKNP------------FGLQGQMLHAQLLGFQHPRSGEYMEF 313 Query: 298 HAPIPQDMVELIEVMRAD 315 AP +++E +R D Sbjct: 314 SAPASGMFQKVLEEIRRD 331 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 174/312 (55%), Gaps = 9/312 (2%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + G RLD+ LA P+ SR+RIK + D RV + +V G+ ++ Sbjct: 192 VEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDVP 251 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP----I 126 + A+ EPQDI L +VYEDED+I+I+KP +VVHP GNPD T++NALL + I Sbjct: 252 PDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGI 311 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTV 185 V R GIVHR+DKDT+GL+V AKT A L + R Y A+ G G + Sbjct: 312 GGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEI 371 Query: 186 DEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAH 242 + I R+P R MAV GKPA+T YR+++ F + + RL TGRTHQIRVHM Sbjct: 372 EGNIGRNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTT 431 Query: 243 ITHPLVGDPVYGG-RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 HPLVGDPVYG R + L +F RQALHA +L HP G ++ + + + Sbjct: 432 QGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESGM 491 Query: 302 PQDMVELIEVMR 313 P D+ L++++ Sbjct: 492 PLDINALMQILE 503 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 117/301 (38%), Positives = 179/301 (59%), Gaps = 18/301 (5%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +R+D+ L++ P SRS+I++ I + + VN K K KV G+++ + E Sbjct: 15 ERIDKYLSKKVP-LSRSQIQDLIEKELIKVNEKPI-KNSYKVKLGDRIEVIIPPPVETEV 72 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRAGI 134 +PQDIP++IVYEDED++IINKP+ +VVHP G+ + T++NALL+ I R GI Sbjct: 73 KPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKDLSGIGGELRPGI 132 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHP 193 +HRLDKDTTGL+++AK + +L E L+ R + R Y A+ G + ++ PI RHP Sbjct: 133 IHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAPIGRHP 192 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 R MA+ P GK A+T+++++E F+ +T + LETGRTHQIRVH++H+ P+VGD VY Sbjct: 193 INRKKMAIVPYGKIAITNFKVLERFKGYTLISADLETGRTHQIRVHISHLGFPIVGDEVY 252 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 G I Q LHA + HP GI ME+ +P++ +++ ++R Sbjct: 253 G------------RIDKKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDLPEEFKKVLTLLR 300 Query: 314 A 314 Sbjct: 301 E 301 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 176/324 (54%), Gaps = 20/324 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V+ + G RLD+ + E P+ SR+ I+ I + VLVNG KP KV G+ + Sbjct: 1 MDIQVTSRENGWRLDKFVMEKTPEWISRTFIQRAIKNGEVLVNG-TSKKPSYKVKSGDII 59 Query: 66 AINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 +NA E P+DIPLDI+YED DI++INK ++ HP + GT++N +L++ Sbjct: 60 TLNAPEAPEIPEILPEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCK 119 Query: 125 P---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 I V R GIVHRLDKDT+G+MV+AK A L + + R + Y + G Sbjct: 120 DLQGIGGVLRPGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKR 179 Query: 181 AGGTVDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIR 237 G ++ I+R+P R M V GKPA+THY+++ F + +TGRTHQIR Sbjct: 180 KEGDIEINIARNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRTHQIR 239 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM +I HPL+GD VYG A + RQ LHA L YHP +G ++++ Sbjct: 240 VHMKYIGHPLMGDEVYG----------RAKEDEIFGIKRQMLHALSLSFYHPRTGEKVKF 289 Query: 298 HAPIPQDMVELIEVMRADFEEHKD 321 A IPQD E I+ + ++K+ Sbjct: 290 IAKIPQDFKEAIQKLDDFIRKNKN 313 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 149/314 (47%), Positives = 212/314 (67%), Gaps = 2/314 (0%) Query: 3 QRVQLTATVS-ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 ++ +L+A V G+RLDQ L+++F YSRS +K+WI+ V +NGK+ ++P +K+LG Sbjct: 2 EKKELSACVPFMGFSGKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILG 61 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 GE++ I + E+ PQ+I L+ +YED +I+IINKP LVVHPGAGN DGT+LNALL+ Sbjct: 62 GEKITIYSTDEKLPINLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLY 121 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 Y I+ +PR GI+HRLDKDT+GLMV+AKT+ + +LV L++R+I R+Y+ + G+M + Sbjct: 122 RYTNISSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMIS 181 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GG V+ PI RHP KR M +GK ++THY+I+ F+ HT + RLETGRTHQIRVHM Sbjct: 182 GGIVNYPIMRHPFKRICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHML 241 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAF-ISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 HI +PL+GDP+YGG E I RQALHA + HP + M W A Sbjct: 242 HIGYPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSAS 301 Query: 301 IPQDMVELIEVMRA 314 +PQDM +++ ++ Sbjct: 302 LPQDMKDILLYLKK 315 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 132/324 (40%), Positives = 180/324 (55%), Gaps = 21/324 (6%) Query: 11 VSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 ++ RLD LA D SR+R+K I V VNG +PK K+ G+Q+ I Sbjct: 16 IAGEDAEGRLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIKPGDQLVIAM 75 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---- 125 E+ + +DIPL ++YED+D+I+++KP LVVHPGAGN GT++NAL+H+ Sbjct: 76 PEPEDPEPKGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIHHCGDSLSG 135 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE----ITREYEAVAIGHMTA 181 I V R GIVHRLDK+T+G+MVVAK A L + + R Y+A+ G Sbjct: 136 IGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQALVWGRPRG 195 Query: 182 -GGTVDEPISR--HPTKRT-HMAVHPMGKPAVTHYRIMEHFRV-------HTRLRLRLET 230 GT+D + R TKRT + A+THY++ME + + + RLET Sbjct: 196 LRGTIDAALGRAGDRTKRTVKREDTDDAREAITHYQVMERYGEKPDATCLASLVECRLET 255 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHP 289 GRTHQIRVHMAHI HPL+GDP YG + +A + + F RQALHA +L HP Sbjct: 256 GRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHAYLLAFEHP 315 Query: 290 ISGIEMEWHAPIPQDMVELIEVMR 313 +G M + APIP DM +I +R Sbjct: 316 TTGDVMHFAAPIPDDMETIIRALR 339 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 383 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 112/319 (35%), Positives = 172/319 (53%), Gaps = 29/319 (9%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + +RLD L++ ++RSR++ + ++ V +N + KV GG+++ + Sbjct: 23 VPRGEQPKRLDIYLSKNCLGFTRSRVQRLLEEKLVTIND-IYPASSHKVRGGDRIRVLIP 81 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 +P++I L+I+YEDED+I+I+KP LVVHP G+ GT++N LL ++ D Sbjct: 82 PPRSQTAQPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQGDEQ 141 Query: 131 ---------------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 RAG+VHRLD+DT+G+MVV KT L+ + R ++++Y A+ Sbjct: 142 KKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKYLALV 201 Query: 176 IGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRT 233 G + G ++ PI R R V GKP+VT YR++E + ++ L + L TGRT Sbjct: 202 KGILPKKRGEINAPIGRSTHDRKKFTVRQDGKPSVTRYRVLETYHENYSLLEVTLLTGRT 261 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH ++ PL+GD VYG + K F RQ LHA L HP S Sbjct: 262 HQIRVHFRYLGFPLLGDAVYGSKGTENKN-----------FPRQMLHAWKLSFQHPSSNS 310 Query: 294 EMEWHAPIPQDMVELIEVM 312 +ME+ AP+P D V +E + Sbjct: 311 KMEFEAPLPPDFVSALERL 329 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 126/321 (39%), Positives = 178/321 (55%), Gaps = 20/321 (6%) Query: 12 SENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 S++ R+D+ LA + +SRS +K IL+ + +NG V P KV+ G+ I Sbjct: 17 SDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVP 76 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----YPPI 126 ++ ++IPLDI+YED+DII+INKP LVVHP GN GT++NALL++ I Sbjct: 77 AAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSI 136 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVAIG-HMTA 181 V R GIVHRLDKDTTG+MVVAK A +L E + R Y A+ G + Sbjct: 137 NGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPD 196 Query: 182 GGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-----TRLRLRLETGR 232 G ++ P+ R + R AV A+THY+ +E + + + L+ LETGR Sbjct: 197 SGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGR 256 Query: 233 THQIRVHMAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 THQIRVHMAH +PL+GDP+YG G + S + RQALHA L HP + Sbjct: 257 THQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRN 316 Query: 292 GIEMEWHAPIPQDMVELIEVM 312 +M++ PIP+DM+ +I + Sbjct: 317 NQDMDFQVPIPEDMLTVIRKL 337 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 145/306 (47%), Positives = 184/306 (60%), Gaps = 20/306 (6%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA-E 70 + + G RLD+ L+ + P YSRSR+++WI V V+G+V + K V G E+V I Sbjct: 43 NPDVCGVRLDKVLSTLVPQYSRSRLQQWIDGGHVSVDGEVA-RAKMTVYGDEKVVIYPQP 101 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 E+ F+P+ + L IV+ED ++++INKP LVVHP AGN GT+LN LLHY P I+ VP Sbjct: 102 APEDEAFKPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPSISGVP 161 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPIS 190 RAGIVHRLDKDT+GLMVVAKT+ A T LV LQ R + REY A+ G G +D I Sbjct: 162 RAGIVHRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPNITGKIDASIG 221 Query: 191 RHPTKRTHMAVHPM--GKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVHMAHIT 244 RH R MAV KPAVTH++ + R + + RLETGRTHQIRVHM I Sbjct: 222 RHARDRIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVHMQSIG 281 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 LVGD +YG + F RQALHA L L HP+SG +EW + +PQD Sbjct: 282 FALVGDGLYGKQ------------HLTTVFPRQALHARRLGLIHPVSGEAVEWSSELPQD 329 Query: 305 MVELIE 310 ELI Sbjct: 330 FAELIA 335 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 127/325 (39%), Positives = 177/325 (54%), Gaps = 22/325 (6%) Query: 12 SENQLGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 E+ LGQR+DQ LA+ + + SRSR++ I + + ++GK+ +PK K+ + + + Sbjct: 7 DEDALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQTIELTIP 66 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP----I 126 A E + IPL I++ED+ II++NKP LVVHPG GN GT++NAL+++ I Sbjct: 67 TLNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCGDSLSGI 126 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVAIGHMTAG 182 V R GIVHRLDK+T+G++VVAK A L + R Y A+ G Sbjct: 127 GGVRRPGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIWGSPNRN 186 Query: 183 -GTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRV-------HTRLRLRLET 230 G + + R RT AV + + AVTH+ ++E ++ + L RLET Sbjct: 187 IGVITASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFASLLECRLET 246 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHP 289 GRTHQIRVHMAHI HPLVGD VYG + + F+RQALHA L HP Sbjct: 247 GRTHQIRVHMAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAASLTFEHP 306 Query: 290 ISGIEMEWHAPIPQDMVELIEVMRA 314 G M + AP+PQDM ELI + Sbjct: 307 AKGNIMSFSAPLPQDMAELINHFKK 331 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 20/307 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 QRLD+ L SR+ I+ W+ + VNG+V K K G++V I + E+ Sbjct: 16 QRLDKVLTGEL-GLSRTTIQSWLKAGLISVNGEVV-KSNYKAQSGDEVTILQKEEDVITI 73 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD-----VPRA 132 +P++IPLDIV+ED+ +I++NKP +VVHP G+ GT++NALL++ ++D + R Sbjct: 74 QPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRP 133 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISR 191 G+VHR+DKDT+GL+V+AK +L E + ++ REY A+ GH G VD P+SR Sbjct: 134 GLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSR 193 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 H T R V GK A+TH+ +++ F ++ + RLETGRTHQIR HM I HP+V DP Sbjct: 194 HQTNRLKRVVEKGGKNAITHFEVLDSFSDYSLVSCRLETGRTHQIRAHMEFIKHPIVNDP 253 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 +Y + + Q LHA L HP++G + + P++ E I++ Sbjct: 254 LYHPKGKNATEFG------------QFLHARTLSFTHPLTGETLNFQVEPPKEFAEFIQL 301 Query: 312 MRADFEE 318 + FE+ Sbjct: 302 NKGHFED 308 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 129/316 (40%), Positives = 176/316 (55%), Gaps = 20/316 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV Q G R D+ LAE ++SRS +++ + V +NG+V KP KV G+++ + Sbjct: 49 ITVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDRMVLE 108 Query: 69 A-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 ++ F+P+D+ LD+VYEDE ++++NKP LVVHP GN GT+LN LL P Sbjct: 109 MRPTQQSMAFQPEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAR 168 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM--TAGGTV 185 +VPRAGIVHRLDKDT+GLMVVA++ A LV + R+++R+Y A+A V Sbjct: 169 EVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHREV 228 Query: 186 DEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 D PI R P R MAV GK A T ++ + +R L TGRTHQIRVHMA Sbjct: 229 DAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHTGRTHQIRVHMA 288 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HPLV D VYGG+ RQALHA L HP++G + AP+ Sbjct: 289 SLGHPLVADAVYGGKEAG-------------GMARQALHAFRLAFTHPMTGQALVLRAPL 335 Query: 302 PQDMVELIEVMRADFE 317 P DM + +E + Sbjct: 336 PPDMAQALENWGLSYN 351 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 138/310 (44%), Positives = 176/310 (56%), Gaps = 18/310 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V+E LG RLD+ LAE P+ SRSR ++ I +V NG VC + G+++ +N Sbjct: 25 VAEGTLGVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIP 84 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IA 127 Q+IPLDI+YEDE +IIINKP LVVHPG G+PDGTV+NALL + P I Sbjct: 85 ELIPLDVVAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIG 144 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVD 186 V R GIVHRLDKDTTG MVVAKT A L L+ + R Y + G GTV+ Sbjct: 145 GVQRPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVN 204 Query: 187 EPISRHPTKRTHMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 P+ RHP R M + P G+ AVTH+R++E H+ L +LETGRTHQIRVH + Sbjct: 205 LPVGRHPGDRQKMGIVPVEKGGREAVTHWRLLERIGNHSWLEFQLETGRTHQIRVHSKQM 264 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +Y + S QALHA L L HP+SG + AP+P Sbjct: 265 GHPLVGDNLY-----------TSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMPA 313 Query: 304 DMVELIEVMR 313 +L+ +R Sbjct: 314 HFEKLLVYLR 323 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 136/309 (44%), Positives = 183/309 (59%), Gaps = 16/309 (5%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI---NA 69 E Q G RLD+ L ++ P SRS I++ I D V VNG+ K K+ G E + + N Sbjct: 9 EGQAG-RLDKVLTDLLPGESRSTIQKIIKDGLVSVNGQ-EQKANFKLKGDETLLVARRNL 66 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PP 125 +EE++ EP+ + LDI+YEDEDI++INKP LVVHP G+ GT++N LLHY Sbjct: 67 AVEEDSLPEPEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLST 126 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGT 184 +D R GIVHR+DKDT+GL+VVAK A L + L ++ R Y A+ G + A GT Sbjct: 127 GSDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGT 186 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ P+ R P R V GK A+T +++ME+F T L L LETGRTHQIRVH+ I Sbjct: 187 IEAPLQRDPANRLRWTVAKEGKYALTRFQVMENFENATLLDLELETGRTHQIRVHLEFIG 246 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HPLVGDPVY KG S + Q LHA L+L HP SG +E+ AP+P+ Sbjct: 247 HPLVGDPVY------RKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPRR 300 Query: 305 MVELIEVMR 313 E ++ +R Sbjct: 301 FEEALDQLR 309 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 121/320 (37%), Positives = 180/320 (56%), Gaps = 15/320 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + TV G R+D L ++P+Y+R + I + VLVNG K ++ ++V+ Sbjct: 17 IEITVEARAHGWRIDHYLCRLYPNYTRVLFQTAIKQEAVLVNGLPV-KAARRMRVNDRVS 75 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + + R P+DIP+DIVYED+ I IINKP D++VHPG GN GT+ AL +++ + Sbjct: 76 VRLPELPDNRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQYHFDQL 135 Query: 127 ADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 +DV R GIVHRLD++T+G+MVVAK +L ++R++ +EY A+ G M Sbjct: 136 SDVAGQYRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDT 195 Query: 184 T-VDEPISRHPTKRTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +D + HP R M V G + A T+Y ++E ++ T +RL+ TGRTHQ+RVH Sbjct: 196 DYIDTFMCVHPRAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVRLKPRTGRTHQLRVH 255 Query: 240 MAHITHPLVGDPVYGGRPRPP-------KGASEAFISTLRKFDRQALHATMLRLYHPISG 292 M HI H +V D VYGG A A + + +RQALHA L +HP SG Sbjct: 256 MQHIGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSG 315 Query: 293 IEMEWHAPIPQDMVELIEVM 312 M++ AP+P+DM + + Sbjct: 316 KPMKFEAPLPEDMQNTLAAL 335 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 171/320 (53%), Gaps = 13/320 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M L V + +RLD+ LA +PD+SRS IK+ + + V VNG+ KP K+ Sbjct: 1 MKISEVLEFKVEGEE--ERLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLR 58 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE+V ++ E +P++IP++I+YEDEDI ++ KP LVVHP G GT++NALL Sbjct: 59 EGERVILHVPEPEPLDVKPENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALL 118 Query: 121 HY---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 ++ I V R GIVHRLDK+T G+MV+AK A LV Q R+ + Y+ + G Sbjct: 119 YHIKDLSSIGGVERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKG 178 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTH 234 + G +D PI+RHP R V GK A+T Y +++ + + T L++++ TGRTH Sbjct: 179 LVKKDYGAIDTPIARHPVDRKRFWVRKEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTH 238 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH A I HP++GD YG + + + L A L YHP G Sbjct: 239 QIRVHFASIGHPVLGDRTYGFKSSSVPKELLSLMGECN-----MLIAYHLGFYHPTKGEW 293 Query: 295 MEWHAPIPQDMVELIEVMRA 314 M + P+ + + Sbjct: 294 MVFEIEEPETFKSVYSWLEE 313 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 118/306 (38%), Positives = 179/306 (58%), Gaps = 18/306 (5%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 + GQR+D+ L E ++SR++I++WI V VN +V K K + + + + Sbjct: 10 NPEDTGQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVI-KSNYKTKMNDHIVVTEKE 68 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP- 130 EA +P+++ LDI YED+D+ I+ KP+ +VVHP AG+ GT++N L++ ++ + Sbjct: 69 TVEADIQPENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGING 128 Query: 131 --RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDE 187 R GIVHR+DKDT+GL++VAK A LV+ L + +TR+Y A+ G + GTVD Sbjct: 129 EIRPGIVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDA 188 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 PI R+ R M V GK AVTH+ ++EHF +T + +LETGRTHQIRVHM +I +PL Sbjct: 189 PIGRNKNDRQSMDVVDDGKEAVTHFNVLEHFNKYTLIECQLETGRTHQIRVHMKYIGYPL 248 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 VGDP YG + QALHA ++ HP++ +E +P+D + Sbjct: 249 VGDPKYGPKKTLD-------------IGGQALHAGIIGFEHPVTHEYIEKSTALPEDFEQ 295 Query: 308 LIEVMR 313 L+ +R Sbjct: 296 LLSELR 301 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 15/321 (4%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 V NQ R+D+ LA+ SR+RI++ + VNGK K KV + V + Sbjct: 55 KVQVDANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPV-KSNYKVRPNDLVTL 113 Query: 68 NAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E +P++I +++VYED+ ++++NK +VVHPGAGN GT++ A+ + + Sbjct: 114 MLDRPRHETSIKPEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLRDM 173 Query: 127 ----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TA 181 A+ P G+VHR+DKDT+GL+VVAKT A+ L + + R Y A+ G++ Sbjct: 174 PEFDANDPEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIVED 233 Query: 182 GGTVDEPISRHPTKRTHMAV-HPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 G ++ I R P R M V P GK AVTHY+++E F T ++ LETGRTHQIR Sbjct: 234 EGRIEGNIGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVLETGRTHQIR 293 Query: 238 VHMAHITHPLVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HM HI HPL D YGG R + + + RQALHA L HP + Sbjct: 294 AHMKHIGHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTTKQ 353 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 +M++ + P D +LIE R Sbjct: 354 QMDFDSEWPNDFRQLIEKWRG 374 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 23/323 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M +R+ V +RLD +A+ P + SR+ I+ I ++ VNG KP KV Sbjct: 1 MEKRM---YKVEREDEQKRLDIYIAQKMPIEISRNLIQNAITKGQITVNGSQ-KKPHYKV 56 Query: 60 LGGEQVAIN----AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 G+++ I+ E +E P++IPL+I+YEDE++I+INKP L+VHP GT+ Sbjct: 57 KQGDEIQIDFHELVEETKEENILPENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTL 116 Query: 116 LNALLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 +NAL+H+ + D R GIVHRLDK+T+G++VVAK + L + + R+ + Y Sbjct: 117 VNALMHHVKDLDKTMQDPNRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYY 176 Query: 172 EAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV-HTRLRLRLE 229 A+ G + G ++ P+ RHP R AV GK A+T Y+ ++ F T + +RL Sbjct: 177 LAIVEGTLKEKEGEINLPLGRHPILRHKRAVVYNGKEAITEYKTLKEFGDLATLVWIRLR 236 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH +I +PL+GD +YG RQ LHA L YHP Sbjct: 237 TGRTHQIRVHFKYIGNPLIGDSLYGKNKIEKNLQIP--------VGRQMLHALKLGFYHP 288 Query: 290 ISGIEMEWHAPIPQDMVELIEVM 312 + ME+ AP+P D L+ + Sbjct: 289 KTKEWMEFLAPLPDDFKNLLITL 311 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 378 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 177/312 (56%), Gaps = 7/312 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT V RLD+AL+++ SR++I++ I + +VLVN + P V + + Sbjct: 2 LTYNVPNELNNIRLDKALSQLLEKISRNQIQKAIKNSQVLVNDVIISDPDVLVKENDVIL 61 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---Y 123 + EE + +I LDI+YED+D+I+INK + VHPGAG+ D T++NALL++ Sbjct: 62 FAFKEPEELKIAAVNIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNL 121 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 I R GIVHRLDKDTTGLMVVAK A L +++R++ R+Y+A+ G + Sbjct: 122 SDIGSAARPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLA 181 Query: 183 GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIME--HFRVHTRLRLRLETGRTHQIRVH 239 G + I R +R M++ GK AVTHY+ +E + + + RL TGRTHQIRV Sbjct: 182 GVIKNNIGRSRVERQKMSILKYGGKEAVTHYKTLELFYGGTISMVECRLNTGRTHQIRVQ 241 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++H+ H +VGD YG R +S A + L F RQALH+ L HP S ME+ Sbjct: 242 LSHVKHSVVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSC 301 Query: 300 PIPQDMVELIEV 311 +P+DM +I Sbjct: 302 ELPRDMEAIIAT 313 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 117/319 (36%), Positives = 183/319 (57%), Gaps = 14/319 (4%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V EN +R+DQ +A+ +P SRS++ + I + + +NG++ P KV G+Q+ Sbjct: 6 FVVDENFDQKRIDQVVAKQYPKISRSKVSKIIKTELLKLNGQILKDPSHKVKSGDQIEFE 65 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP--- 125 IEE P+ + L+I++ED+DIIII+KP +VVHPGAGN + T++N LL++ Sbjct: 66 NLIEETINLIPKKMDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLLYHCKNNLS 125 Query: 126 -IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGG 183 + R GIVHR+DKDT+GL+VVAK A + + + I R Y G + G Sbjct: 126 GMNGEDRPGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLHG 185 Query: 184 TVDEPISRHPTKRTHM-AVHPMGKPAVTHYRIMEHFRVH-----TRLRLRLETGRTHQIR 237 ++ I R+ T R M A GK A+T+Y +E F+ + + ++ LETGRTHQIR Sbjct: 186 KIETLIGRNKTNRQKMSADVIRGKDAITNYETLEVFKGNKIPDISLVKCILETGRTHQIR 245 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM+H +P++GD YG + + +G + F L+ RQALHA L HP + E+ + Sbjct: 246 VHMSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEVFF 305 Query: 298 HAPIPQDMVEL---IEVMR 313 + +P D+ +L +E ++ Sbjct: 306 ASELPDDLNKLKNRLETLK 324 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 172/319 (53%), Gaps = 29/319 (9%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + +RLD L+ ++RSR++ + ++ V +N + K+ GG+++ + Sbjct: 23 VPRGEQPKRLDIYLSRNCLGFTRSRVQRLLEEKLVTIND-IYPASSHKIRGGDRIRVLIP 81 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 +P+DI L+I+YED+D+I+I+KP LVVHP G+ GT++N LL ++ D Sbjct: 82 PPRSQAAQPEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQGDEQ 141 Query: 131 ---------------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 RAG+VHRLD+DT+G+MVV K+ L+ + R ++++Y A+ Sbjct: 142 KKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKYLALV 201 Query: 176 IGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRT 233 G + G ++ PI R R AV GKP++T YR++E + ++ L + L TGRT Sbjct: 202 KGILPKKRGEINAPIGRSTHDRKKFAVRQDGKPSLTRYRVLETYHENYSLLEVTLLTGRT 261 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH H+ PL+GD VYG + R F RQ LHA L HP S Sbjct: 262 HQIRVHFRHLGFPLLGDAVYGSKGMEN-----------RNFPRQMLHAWKLAFQHPRSAA 310 Query: 294 EMEWHAPIPQDMVELIEVM 312 +ME+ AP+P D V ++ + Sbjct: 311 KMEFEAPLPPDFVSAMKRL 329 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 135/335 (40%), Positives = 176/335 (52%), Gaps = 26/335 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q+ T GQRLD L SRSR K I + V V G V P+ V G Sbjct: 3 QIVITSEAADAGQRLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKGLVY 62 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP- 124 A+N A E + IPL+I++ED ++I+NK + VHP G+ GT++NALLH+ Sbjct: 63 AVNMPPPVPAMPEAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQG 122 Query: 125 ---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 I V R GIVHRLDK T+G+MV AKT A T L +R +I R Y AV G Sbjct: 123 QLSGIGGVERPGIVHRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRP 182 Query: 181 AGGTVDEPISRHPTKRTHMAVH-----PMGKPAVTHYRIMEHFR---------VHTRLRL 226 GT++ I+R + R M+VH P + AVTHY+ +E F L Sbjct: 183 LSGTIEAAIARSESDRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPAAALLEC 242 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGG-------RPRPPKGASEAFISTLRKFDRQAL 279 RLETGRTHQIRVHMAH PL+GDPVYG + + + ++ R F RQAL Sbjct: 243 RLETGRTHQIRVHMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQAL 302 Query: 280 HATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 HA +L HPI+G + + AP+P+DM LI +R Sbjct: 303 HAAVLGFVHPITGETLRYEAPLPEDMTGLIAALRK 337 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 129/338 (38%), Positives = 178/338 (52%), Gaps = 32/338 (9%) Query: 9 ATVSENQLGQRLDQALAEMFPD---------YSRSRIKEWILDQRVLVNGK-----VCDK 54 TV+ G RLD+ L E D SR+R+++ I +V K + Sbjct: 137 VTVTAEDAGARLDKYLTEALGDKGEGDAPATLSRARMRQLIEQGQVSREEKAGAPKLLTD 196 Query: 55 PKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGT 114 P +V GE+++++ A+ Q IPL+IVYED D+I++ KP LVVHP GNPD T Sbjct: 197 PSYRVKAGERLSVSVPPPTPAKPAGQAIPLEIVYEDADLIVVMKPAGLVVHPAPGNPDMT 256 Query: 115 VLNALLHYYPP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL----QRRE 166 ++NAL+ + I R GIVHRLDK+T+GLMVVAKT A L + + Sbjct: 257 LVNALVAHCGETLSGIGGEKRPGIVHRLDKETSGLMVVAKTDRAHQGLSAQFAAHGRDGK 316 Query: 167 ITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPM------GKPAVTHYRIMEHFR 219 +TR Y A+ G T GTVD I+R R+ MA G+ A+THY + + Sbjct: 317 LTRAYTALTWGVPQTRKGTVDANIARSSHNRSKMATVRDRGEETGGRIAITHYTVKTDYA 376 Query: 220 V--HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDR 276 + RLETGRTHQIRVHM + HPL+GD YG G S + L + +R Sbjct: 377 DGLVAEVECRLETGRTHQIRVHMTALGHPLLGDATYGTGMKSRKSKLSPEAQAALERLNR 436 Query: 277 QALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 QALHA L HP++G +M + AP+P+DM EL+ + Sbjct: 437 QALHAHHLGFEHPVAGEKMSFDAPLPEDMQELVRALEG 474 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 163/317 (51%), Gaps = 22/317 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q V GQR+D+ L+ SRS ++ + + VL NGK K K+ G+ + Sbjct: 3 QREYIVEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAK-SLKLKAGDII 61 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP- 124 + + PQ+IPLDI+YED ++++NKP+ +VVHP GNPDGT++NALL + Sbjct: 62 LLEIPDAKPIEAVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKG 121 Query: 125 ---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 I R GIVHR+DKDT+GL+VVAK L + + + R Y + G Sbjct: 122 SLSGIGGEIRPGIVHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQ 181 Query: 182 G-GTVDEPISRHPTKRTHMAVHPMG----KPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G V+ + R T R MAV+P K A T Y+++E T L RL+TGRTHQI Sbjct: 182 DEGFVESNLGRSKTDRKKMAVYPASEPHTKYAYTGYKVLERLGEFTMLECRLKTGRTHQI 241 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMA I HP+ GDPVYG + + Q LHA L HPI+G + Sbjct: 242 RVHMASIHHPVAGDPVYGPH------------NCITSLHGQCLHAKTLGFIHPITGEHLR 289 Query: 297 WHAPIPQDMVELIEVMR 313 + + +P + +R Sbjct: 290 FDSELPDYFTRFLTTLR 306 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 130/312 (41%), Positives = 180/312 (57%), Gaps = 17/312 (5%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE-I 71 E G RLD L+E D SRS+ K I + V+VN K + G+ V ++ + I Sbjct: 20 EKDEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWV-KASYSITSGDVVKVDTQLI 78 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD--- 128 + E PQ IPLDIVYEDE ++++NKPR++VVHPGAGN T++NALL++ ++D Sbjct: 79 QSEITLIPQSIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQNLSDGTS 138 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDE 187 R GIVHRLDKDT+GL+VVAK L E ++ R + R Y A+ IG T+D Sbjct: 139 YERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKKATIDL 198 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHF---RVHTRLRLRLETGRTHQIRVHMAHIT 244 PI R P R MAV GK A+T ++ F + L+ LETGRTHQIRVH++H+ Sbjct: 199 PIGRDPRNRKKMAVVHGGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQIRVHLSHLG 258 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 +PL+GDPVY +G + + + QALH+ L HP+ M + AP+P D Sbjct: 259 YPLLGDPVY-------RGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAPLPSD 311 Query: 305 MVELIEVM-RAD 315 M+ LI + R+D Sbjct: 312 MMNLISKLTRSD 323 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 124/322 (38%), Positives = 171/322 (53%), Gaps = 15/322 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q R+D+ L + + +RSRI++ + VNG+ K ++ G+ V Sbjct: 32 HFRTVADPGQTLIRIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPV-KSNYRIKPGDVV 90 Query: 66 AINAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E P+DIPLDIVYED+ +++INKP LVVHPG GN GT++NAL +Y Sbjct: 91 TLELLRPRRELEIIPEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLR 150 Query: 125 PIADV----PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + P G+VHR+DKDT+GL+VVAK A++ L + + R Y A+ G Sbjct: 151 EDPEYDPMDPSLGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFD 210 Query: 181 -AGGTVDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 GT+ I R R MAV P +GKPAVTHY+++E + + RLETGRTHQ Sbjct: 211 YPIGTITGNIGRDLKDRLQMAVFPPDGDIGKPAVTHYQVLEELAYVSWIECRLETGRTHQ 270 Query: 236 IRVHMAHITHPLVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 IR HM HI H L D YGG R + L RQALHA L HP++ Sbjct: 271 IRAHMKHIGHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVT 330 Query: 292 GIEMEWHAPIPQDMVELIEVMR 313 G+EM++ + IP D+ L+E R Sbjct: 331 GVEMQFDSDIPADLTTLLERWR 352 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 15/306 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ V E+ G RLD L+ SRS + I + V V+ KP KV G V Sbjct: 20 LSFPVGEDGEGHRLDFVLSREI-GVSRSYASKLIKEGMVQVSWSPRVKPSLKVRVGGTVT 78 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-- 124 EE EPQD+P +VY+D+D+++++KP LVVHP G+ GT+++ LL+ YP Sbjct: 79 AQLPPSEELELEPQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDL 138 Query: 125 -PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 + V R GIVHRLD T+GLMVVA+ A LV + + R + + Y A+A G + G Sbjct: 139 MELNGVKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLRGEG 198 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +V PI R P R MA P G+ A+T YR++ ++ + +++TGRTHQIRVHM + Sbjct: 199 SVSLPIGRDPDNRKRMACVPWGREALTRYRVIWSRGGYSLVACQIKTGRTHQIRVHMRSL 258 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +YGG R LH+ L HP +G M + P+P Sbjct: 259 GHPLVGDRIYGGP-----------CPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICPLPP 307 Query: 304 DMVELI 309 D+V I Sbjct: 308 DLVRFI 313 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 179/336 (53%), Gaps = 16/336 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEK 58 M ++++ T+ E QRLD+ LAE+ YSR+ I+ I + R+LVN K Sbjct: 8 MKDKLKVIYTLQEM---QRLDKFLAELKIQELYSRTFIEHLIEEDRILVNLTPVKK-SYL 63 Query: 59 VLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 + G++V IN E PQDIPLD+VYEDE + IINK ++VHPG GNP+GT++NA Sbjct: 64 LKEGDEVIINLPEPEPMNVLPQDIPLDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVNA 123 Query: 119 LLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 174 +L+ + + R GIVHRLD+ T+GL+++AK +L + RREI + Y A+ Sbjct: 124 ILYRFGENLSSGKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAI 183 Query: 175 AIGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 G G ++ ++R + V G+ A+THY+ ++ + + + TGR Sbjct: 184 TTGIPEPEKGEIETYLARSNKNPRTICVTNEGRYALTHYKTIKTWHYFALVEINPATGRM 243 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRK-----FDRQALHATMLRLYH 288 HQIRVH AHI +P++GD +Y R + + + RQALH+ L +H Sbjct: 244 HQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFH 303 Query: 289 PISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVD 324 PI+G + APIP D+ + + +F D D Sbjct: 304 PITGYPISVSAPIPDDIQYTLNWLDNNFSIDTDTSD 339 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 112/326 (34%), Positives = 175/326 (53%), Gaps = 11/326 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L TV G R+D L+ ++P++SR + I + +VLVNG K ++ + + Sbjct: 15 LVLTVEARAHGWRIDHYLSRLYPNFSRVAFQRTIEEGKVLVNGLPV-KISRRLRVNDVIE 73 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E + R +P+DIPLDI+Y+DE + +INK +++VHPG GN GT+ AL ++ + Sbjct: 74 FSLPAEPDQRVQPEDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDSL 133 Query: 127 ADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 +DV RAGIVHRLD+DT+G++VVAK L + R + +EY A+ G M Sbjct: 134 SDVAGQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDA 193 Query: 184 T-VDEPISRHPTKRTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 V+ + R M V P G + A T Y + + FR T ++L+ +TGRTHQ+RVH Sbjct: 194 DYVETYVRVSFRNRERMMVCPPGDNARQAATFYEVQQRFRGFTYVKLQPQTGRTHQLRVH 253 Query: 240 MAHITHPLVGDPVYGGRPRPPKG---ASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 M H+ HP++ D +Y G+ + DRQALHA L HP++ M Sbjct: 254 MHHLGHPIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMV 313 Query: 297 WHAPIPQDMVELIEVMRADFEEHKDE 322 + AP+P D + ++ ++ + K Sbjct: 314 FEAPLPADFQKTLDTLKTHAIKPKKS 339 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 171/316 (54%), Gaps = 8/316 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCD-KPKEKVLGGEQV 65 + V E + RLDQ LA YSR +++ I VL+NG K +V G++V Sbjct: 37 IELVVEEREADGRLDQFLALRLHRYSRMQLRRVIDAGGVLLNGSRAKVKVAYRVSTGDRV 96 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 +I A P+ IPLDI++EDE +I +NKP +VVHP G+ GT+ +AL ++ Sbjct: 97 SIVLPEMPSAGPNPEKIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQ 156 Query: 126 I---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 + R GIVHRLD+DT+G+++VAKT P L R +EY A+ G Sbjct: 157 LSTVGGQHRPGIVHRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRD 216 Query: 183 G-TVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 V +PI HP R MA+ P + A T + ++E F H + +TGRTHQIRV Sbjct: 217 RDVVSQPIGIHPFHREKMAIRPGHSTSRDAETMFHVLERFAQHAAVECLPKTGRTHQIRV 276 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H+AH+ P++ D +YGGR +G ST +RQALHA L + HP +G + Sbjct: 277 HLAHVRTPVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIE 336 Query: 299 APIPQDMVELIEVMRA 314 AP+P D+ +++++R+ Sbjct: 337 APLPADLQRVLDLLRS 352 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 122/308 (39%), Positives = 180/308 (58%), Gaps = 16/308 (5%) Query: 9 ATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 +SE+++G+RLD+ LA F YSR+ + I +LVNG K + + G++V + Sbjct: 12 LIISEDEVGERLDKVLARRFNAKYSRTYFQFLIDKHLILVNGIAVKK-RTLLQEGDEVEV 70 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E+ P++IPL I+YEDE +++INKP +VVHP GN GT +NALL+Y + Sbjct: 71 QFLASPESNLMPENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLP 130 Query: 128 DVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 +P R GIVHRLDK T+GL+V AKT+ Q +L+E R++ + Y A+ IG A G Sbjct: 131 LLPDTIRPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGR-PADGE 189 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 + PI RHP R MAV P GKPA++ + + + +++ + TGRTHQIRVHM + Sbjct: 190 IQAPIGRHPIHRKQMAVIPTGKPAISFCKTLGWSDKLSFVQIEIATGRTHQIRVHMKYRG 249 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 P++GDP+YG + ++ Q LHA +LR HPIS +E+ P P + Sbjct: 250 SPILGDPLYG----------QISLNQYYSVPHQLLHAAVLRFQHPISLENLEFCTPPPPE 299 Query: 305 MVELIEVM 312 MV LI+ + Sbjct: 300 MVRLIKKI 307 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 140/313 (44%), Positives = 193/313 (61%), Gaps = 12/313 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT + E G+RLD+ALA + PD SRSR+++W++ V VNG + + + G+ V Sbjct: 33 LTLRIDERYAGERLDKALAFLIPDVSRSRLQQWVVAGAVTVNGGAV-RARHTLTFGDVVK 91 Query: 67 INA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + A ++P+ +PL++++ED+ I+++NKP LVVHP AG+ GT+LN LL Y P Sbjct: 92 VTPQPAPDAAAYKPEPMPLEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPT 151 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + DVPRAGIVHRLD DT+GLMVVAKT+ AQT LV LQ R +TREY A+ +G + G + Sbjct: 152 LIDVPRAGIVHRLDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQRGVI 211 Query: 186 DEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVH 239 D I R P V KPA THY ++ + + L RLETGRTHQIRVH Sbjct: 212 DAAIGRDPRNPLRFKVSTTEAAKPARTHYATLDSTKNAGADISWLACRLETGRTHQIRVH 271 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + H+ HPL+GDPVY R PP+G A ++FDRQALHA L L HP+S + W Sbjct: 272 LEHVGHPLIGDPVY-RRRLPPRGEPAARW---KEFDRQALHACRLALDHPVSRQRLNWFH 327 Query: 300 PIPQDMVELIEVM 312 D+ +L+ + Sbjct: 328 SPAADLAQLMHEL 340 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 18/310 (5%) Query: 8 TATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + E + G RLD+ LA+ + + SR+ + I VL+NG+ K + K G+ V Sbjct: 11 SFIIQEMEAGIRLDKVLADRYKSNGSRTYFQMLIEKGLVLLNGEPVKK-RFKPNVGDDVE 69 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-- 124 + E P+ IPL+I+YEDE ++IINKP +VVHP GN GT +NALL++ Sbjct: 70 LFFAAAPEIDLIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYS 129 Query: 125 ---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 D R GIVHRLDK+T+G++V AKT+ Q +L+E R++ +EY A+ +G+ Sbjct: 130 LSDASVDSIRPGIVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGN-PG 188 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 ++ PI RHP R M V GK A+T +E +L L TGRTHQIRVH+ Sbjct: 189 NCELNWPIGRHPIHRKQMTVREDGKEALTFCETLEVGNEICLAKLILSTGRTHQIRVHLK 248 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H HP++GD +YG + ++ + +RQ LHA L HPI+ ++E AP+ Sbjct: 249 HKGHPILGDSIYGSKQ----------VNMRYRAERQMLHARKLAFIHPITQQKIEVEAPL 298 Query: 302 PQDMVELIEV 311 P DM E + Sbjct: 299 PADMEECLRK 308 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 113/324 (34%), Positives = 178/324 (54%), Gaps = 14/324 (4%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 + + L VS G+R D+ +A SR +I+ I D ++L++ VC PK K+ Sbjct: 36 SGKTLLDCMVSPQAAGERADRFIAAALAGDAISRGKIQRAISDGQLLIDNTVCTSPKTKL 95 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+ + + E A P++ L+++Y D +++INKP L VHP P+GT+++ L Sbjct: 96 KSGQHIVFSMEAP-AACVSPEEGELEVLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRL 154 Query: 120 LHYYPPI--ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 LH++P + + R GIVHR+DKDT+GL+++A T A+ L ++ R I +EY A+ G Sbjct: 155 LHHFPELEAQEGFRPGIVHRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKG 214 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR------VHTRLRLRLET 230 G +D P+ RHPT +T MAV G+ A++ +R++ T + +R+ T Sbjct: 215 IPEGDSGEIDAPVGRHPTHKTRMAVVRGGREALSTWRVLLADPHGGGGTGWTLVAVRIHT 274 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVHM H HPL GD +YGG P + + ++ RQ LHA + HP+ Sbjct: 275 GRTHQIRVHMQHTGHPLWGDALYGGMPGREELQTTPALAQTAT--RQMLHAWKISFDHPV 332 Query: 291 SGIEMEWHAPIPQDMVELIEVMRA 314 +G M++ P P D LI + + Sbjct: 333 TGAPMQFTLPPPADFGTLIRDLGS 356 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 117/320 (36%), Positives = 188/320 (58%), Gaps = 8/320 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT V + +RLD L+ PD SRS++++ I + RV VNG K ++ G+ +A Sbjct: 10 LTFHVDVEEKLRRLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPV-KASYEIRSGDCIA 68 Query: 67 INAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E +P+ +PL+I++ED+D++++NK ++VHPGAG+ +GT+++ LL + Sbjct: 69 VWLPEAVGEDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSR 128 Query: 126 IADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 +A R GIVHRLD+ T+G ++VAK+ A L+ + E+ +EY A+ G M A Sbjct: 129 LASRGAPRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGA 188 Query: 182 GGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G + + RHP R MAV G+ AV+ +++ + + LR+ ++TGRTHQIRVH+ Sbjct: 189 SGEIRTGMGRHPVDRKRMAVLEKGGREAVSQWKVAVAWGEVSLLRVVIKTGRTHQIRVHL 248 Query: 241 AHITHPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 +H+ HP+VGD YGG R + S+ L + DRQ LHA L HP+SG ++ + A Sbjct: 249 SHMQHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTA 308 Query: 300 PIPQDMVELIEVMRADFEEH 319 P+P D L+E +R ++ Sbjct: 309 PLPPDFAGLLERIRISLQKE 328 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 133/303 (43%), Positives = 174/303 (57%), Gaps = 18/303 (5%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 QRLD L+ + SRSR+++ I VL+N +VC K V G+++ + + + Sbjct: 33 QRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRICVEIPSLQPLKL 92 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRAGI 134 +DIPLDI+YEDE ++I+NKP LVVHP G+ DGT++NALL + P I V R GI Sbjct: 93 VAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIGGVQRPGI 152 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHP 193 VHRLDKDTTG + +AKT A L LQ + REY V G G ++ PISRHP Sbjct: 153 VHRLDKDTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHP 212 Query: 194 TKRTHMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 R MA+ P G+ A+TH++I E +T + +LETGRTHQIRVH A I HP+VGD Sbjct: 213 QDRKKMAIVPTEQGGRTAITHWQIRERLSNYTLIHFQLETGRTHQIRVHSAKIGHPIVGD 272 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 VYG A S ALHA L+L HPISG ++ A PQ L+E Sbjct: 273 SVYG-----------AGRSVGVNLAGHALHAWQLKLQHPISGDWIQVTASPPQTFTTLLE 321 Query: 311 VMR 313 V+R Sbjct: 322 VLR 324 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 128/322 (39%), Positives = 182/322 (56%), Gaps = 23/322 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD----YSRSRIKEWILDQRVLVNGKVCDKPK 56 M + + VS G+RLD+ L + + SR++++ W+ D + K Sbjct: 1 MRPAIHVQYEVSAEDAGERLDRWLTDRLQEDDIEVSRTQVQRWLDDGFIRRARPGRLKAS 60 Query: 57 EKVLGGEQVAINAEIEEEARFEPQD-IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 + V G+ ++ EE P D +P + YED+D+I+++KPR +VVHPGAG+ GT+ Sbjct: 61 DPVEAGDLYEVDVPEEEPLELVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTL 120 Query: 116 LNALLHY---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 +N LL +A R G+VHR+DKDT+GL+V AK+ A LVE+ + ++ REY Sbjct: 121 VNGLLARGTPLCTLAGALRPGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYV 180 Query: 173 AVAIGHMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETG 231 A+A G M GT+D PI+R P R MAV GK AVTH+ ++E F ++ LRLRLETG Sbjct: 181 AIAHGRMPHREGTIDMPIARDPADRQRMAVRQGGKRAVTHFEVLESFAKYSYLRLRLETG 240 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH+A I HP+ GDPVYG R P D QALHA L HP Sbjct: 241 RTHQIRVHLAAIGHPIAGDPVYGPRHTLP-------------IDGQALHARTLGFTHP-D 286 Query: 292 GIEMEWHAPIPQDMVELIEVMR 313 G + + + +P DM L++ +R Sbjct: 287 GRRLRFESAVPSDMARLLDGLR 308 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 180/323 (55%), Gaps = 22/323 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + + + +VS NQ G RLDQ LA PD SR+ I + VLV+ + K ++ Sbjct: 14 SDQQKFEFSVSYNQRGTRLDQFLAFSLPDVSRALITLSNKKELVLVDDE-VKKSSYRLKE 72 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 GE V EPQ + + +YED+ +++++KP +VVHPG GN +GT+++ LL+ Sbjct: 73 GETVTCALWQAPPLSLEPQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLY 132 Query: 122 YYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + I V R GIVHRLDKDT+G MVVAK + LV+S + R++ + Y A+ G Sbjct: 133 HCREIGGVGDAIRPGIVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGI 192 Query: 179 MTA-GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRV----HTRLRLRLETGR 232 G + PI RH R MA+ GK A T+++++E F ++ LR+ +ETGR Sbjct: 193 PKKYEGRIVAPIGRHSVHRQKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETGR 252 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIRVHM+ I P+ GD VYG + + P F RQ LHA+ LRL HP++G Sbjct: 253 THQIRVHMSSIGCPIAGDQVYGSKRQNP------------AFARQMLHASRLRLPHPVTG 300 Query: 293 IEMEWHAPIPQDMVELIEVMRAD 315 M + AP+ QD E++E M Sbjct: 301 RTMSFTAPLWQDFQEVLEDMDWS 323 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 129/303 (42%), Positives = 175/303 (57%), Gaps = 19/303 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 RLD+ L + SR+RI+++I V VNGK K K + G+QV + E + Sbjct: 40 MRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQ-GKAKTPLREGDQVQLWMPPPEPLPY 98 Query: 78 -EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IADVPRAG 133 +PQ + LD+++EDE II++NK L VHP GN DGT++N LLH+ P I+ R G Sbjct: 99 LKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPG 158 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRH 192 IVHRLDKDT+G +VVAK+ A +L +Q+R +REY AV G GT+ + RH Sbjct: 159 IVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTIIGAVGRH 218 Query: 193 PTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 P R AV G+ A TH+ ++E F ++ LR +L+TGRTHQIRVH AHI HP+VGD Sbjct: 219 PVDRKKYAVVSDESGRYARTHWTLIERFGDYSLLRFKLDTGRTHQIRVHCAHINHPVVGD 278 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 P Y + P QALHA L L HPI+G M + AP+P M +L+ Sbjct: 279 PTYSRCRKLP-----------LDLPGQALHAVQLGLDHPITGERMVFEAPLPPVMEKLLL 327 Query: 311 VMR 313 V+R Sbjct: 328 VLR 330 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 184/324 (56%), Gaps = 13/324 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + + L V E++ RLD + + SR+RIK IL +++ +N ++ + P +KVL Sbjct: 1 MEKNINL--IVGEDENNLRLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVL 58 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+++ + +EA +P + L IVYED+D++IINKP +++HPGAGN D T++NAL+ Sbjct: 59 SGDEINLQIPEPKEASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALM 118 Query: 121 HY----YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 HY I D R GIVHR+DKDT+GL+V+AK L ITR Y+ + Sbjct: 119 HYNKDSLSTIGDELRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIW 178 Query: 177 GHM-TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRV-----HTRLRLRLE 229 G + + G +D I+R R M V GK A+T+Y+ +E F + + RLE Sbjct: 179 GKLRPSSGKIDTFITRSSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLE 238 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVHM H+ + ++GD Y + + K + + K DRQ LHA L HP Sbjct: 239 TGRTHQIRVHMTHMGNSIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHP 298 Query: 290 ISGIEMEWHAPIPQDMVELIEVMR 313 + EM + + +PQ++ ++ ++R Sbjct: 299 RTNEEMVFTSILPQELENILVLLR 322 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 120/327 (36%), Positives = 173/327 (52%), Gaps = 22/327 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCD---- 53 +A+ V+ ++ G+RLD LA +RSR++ I RV V + Sbjct: 3 LAETSSFAFVVAPHEAGRRLDLVLATRAAGSAELTRSRLQSLIRQGRVRVESAGVEAGPL 62 Query: 54 KPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG 113 KP + G++V + E +++ +YEDEDI+++ KP LVVHP G+ G Sbjct: 63 KPGMLLKAGDRVDLQVPPPEATELVAEEVEFTPLYEDEDILVLVKPPGLVVHPADGHRQG 122 Query: 114 TVLNALLHYYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 170 T+++ LLH+ ++ + R GIVHRLDKDT+G +VVAK A LV+ + RE+ + Sbjct: 123 TLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKT 182 Query: 171 YEAVAIGHMTAG-GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHF-RVHTRLRLR 227 Y+A+ G + G V PI RHP R MAV G+ AVTH+R+ + F +T + L Sbjct: 183 YQALLRGILAEDTGQVVLPIGRHPVHRKKMAVRREGGREAVTHWRVRQRFSAGYTLVELL 242 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 LETGRTHQIRVHMA + HPL GD +YG P DRQ LHA L Sbjct: 243 LETGRTHQIRVHMAALGHPLAGDRLYGRNPEK---------DMPYGIDRQWLHAWRLAFN 293 Query: 288 HPISGIEMEWHAPIPQDMVELIEVMRA 314 HP SG + + AP+ D+ ++ +R Sbjct: 294 HPRSGRRLTFTAPLWVDLQASLDRLRE 320 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 155/313 (49%), Positives = 221/313 (70%), Gaps = 8/313 (2%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI-- 67 V +Q G RLD L+++ P YSRS+IK WIL+++V+VN +V P++KV+ GE + I Sbjct: 8 IVQVHQSGYRLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELIEIKY 67 Query: 68 --NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 N +I + PQ+IPL+I+YED DI++INK ++VVHPG G+ GTVLNALL+ YP Sbjct: 68 INNNDICKSEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPS 127 Query: 126 IADVPR-AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 I + + AGIV RLDKDTTGLM++AKTV A L+ S + R++ +EY+A+ G T+ G Sbjct: 128 ILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAG 187 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 V++P+ RH KRT M+VH GK AVT+Y ++E F+ H+R+R+ L+TGRTHQIRVHMA+I Sbjct: 188 VVNQPMRRHFAKRTFMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGRTHQIRVHMAYI 247 Query: 244 THPLVGDPVYGGRPR--PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 HPLVGD Y G K S+ + L F+RQALHA L+L HPI+ ++M+W+AP+ Sbjct: 248 NHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPL 307 Query: 302 PQDMVELIEVMRA 314 PQD+++LI +++ Sbjct: 308 PQDILQLIAILKK 320 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 171/318 (53%), Gaps = 11/318 (3%) Query: 7 LTATVSENQLGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 L V G RLDQ + D+SRS ++ I VL+NG+ KP KV +++ Sbjct: 31 LDLLVMVKSEGMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVLKPSYKVRKNDRL 90 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + P+DIPLDI+Y+DE + ++NKP D+VVHP GN GT++NAL ++ Sbjct: 91 HVTMPEPTHEIPVPEDIPLDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFRE 150 Query: 126 I----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 A RAGIVHRLDKDT+G+++VAK L + R++ +EY A+A G + Sbjct: 151 HLSTGAGHLRAGIVHRLDKDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELER 210 Query: 182 GGT-VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 ++ + HP R M V P K A+++Y ++E FR T ++++ TGRTHQIRV Sbjct: 211 DSDYIEGALKMHPYDRLKMIVSTDPDAKHALSYYEVLERFRGFTLVKVQPRTGRTHQIRV 270 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRK---FDRQALHATMLRLYHPISGIEM 295 H+ H+ ++ D +YGGR + RQALHA LR HP +G + Sbjct: 271 HLLHVGCAVLADKIYGGRAQVKLSEIAPGTPPAEDEVLLGRQALHAFRLRFQHPRTGQWI 330 Query: 296 EWHAPIPQDMVELIEVMR 313 E AP+P DM ++ +R Sbjct: 331 EAEAPLPPDMRRTLDALR 348 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 182/321 (56%), Gaps = 9/321 (2%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A ++T + +R+D+ ++ FPD SR+ I++ + + ++VNG V K + Sbjct: 10 AHVKEVTLEIKRVGESKRIDRFISSRFPDLSRTYIQKLVKEGAIVVNGNVV-KSSYFIKK 68 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ ++ + EE + P+DIPL+I+YED+ +++INKP D+VVHP G+P GT++NA+ Sbjct: 69 GDVISATVPVPEETKITPEDIPLNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTF 128 Query: 122 YYPPIADVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 Y ++ + +AGIVHRLD+DT+G+M+V K+ + + ++R + +EY AV G Sbjct: 129 YCQNLSQINGPLKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGE 188 Query: 179 MT-AGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + ++ PI RH R MAV GK A + Y ++E FR +T +++ +TGRTHQI Sbjct: 189 VAFDSNEINMPIGRHRVDRQKMAVRRDTGKNATSVYEVIERFRGYTLVKIMPKTGRTHQI 248 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKG---ASEAFISTLRKFDRQALHATMLRLYHPISGI 293 RVHM I HP+V D +Y + E +RQALHA + +HPI Sbjct: 249 RVHMQAIGHPVVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNK 308 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 +M + + +D+ L+ +R Sbjct: 309 QMAFQVDMAEDISFLVSALRE 329 >UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUD_BUCBP Length = 317 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 146/317 (46%), Positives = 218/317 (68%), Gaps = 1/317 (0%) Query: 1 MAQRVQLTATVSE-NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M +++L A V + + L RLDQ LA +F +SR+ +K IL + V VNG++ D+P KV Sbjct: 1 MQNKLKLIAIVPKISLLKNRLDQVLASLFKKHSRTILKRHILSKDVCVNGRILDQPDAKV 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 L + ++IN + + + ++ ++I L+++YED+DI++INK + VVHPGAGN GT+LNAL Sbjct: 61 LYKDIISINLKFKAKNDYQAENIFLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNAL 120 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 LH ++PRAGIVHRLDKDTTGLMV+AK + L++ ++ +++ REY+A+ G + Sbjct: 121 LHRDSTFFNIPRAGIVHRLDKDTTGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKV 180 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +GGT+ + I R+P KRT M V+ GK A+THYRI++ F HT L++ LETGRTHQIR H Sbjct: 181 ISGGTIVKSIIRNPIKRTTMIVNKCGKRAITHYRILKRFTHHTHLKIILETGRTHQIRTH 240 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M +I PLVGD YG + + K S + ++KF RQALHA+ L LYHP++ MEW++ Sbjct: 241 MLYINFPLVGDKTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNS 300 Query: 300 PIPQDMVELIEVMRADF 316 +P+DM+ LI ++ + Sbjct: 301 TLPRDMLNLIALLNKNI 317 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 164/311 (52%), Gaps = 20/311 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + T GQR+DQ L PD+SRSRI+EWI RV VNG K + + V Sbjct: 1 MRFTADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAV-KTSYTLRAADAVE 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + +DIPL I+YED D++ I+KP +VVH GAG GT++NALLH + + Sbjct: 60 VEPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFATL 119 Query: 127 ---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 R GIVHRLD+ T+G+++VAK A +L REI + Y A+ G + Sbjct: 120 SGVGGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPET 179 Query: 183 GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 G ++ PI+R P R M G+ A + YR++ F T L +R+ TGRTHQIRVH+A Sbjct: 180 GRIERPIARDPVHRARMTARLAEGRAAWSEYRVLRRFPDFTLLEVRIGTGRTHQIRVHLA 239 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 I HP+VGD +YG +P R LHA +R + P SG EM +P+ Sbjct: 240 SIRHPVVGDTLYGAPAQP-------------LLGRYFLHAHRIRFHLP-SGREMLIESPL 285 Query: 302 PQDMVELIEVM 312 P D+ + + Sbjct: 286 PPDLEAWLGTL 296 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 171/338 (50%), Gaps = 38/338 (11%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + G+RLD+ L P+ SRSR K I VL++ PK KV+ + Sbjct: 20 SIVIVAPAEFAGERLDKWLPIAAPELSRSRAKAIIEKGDVLLDDTAITSPKHKVIADGRY 79 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY--- 122 I +A P+DIPLD+++EDE +II+NKP LVVHP G+ GT++NALLH+ Sbjct: 80 VILMPPPLDAEPLPEDIPLDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAG 139 Query: 123 -YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 P I V R GIVHRLDKDT+G+MV AKT A T L Q + R Y AV G Sbjct: 140 QLPGIGGVARPGIVHRLDKDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRP 199 Query: 181 AGGTVDEPISRHPTKRTHMAVHPM--------------------GKPAVTHYRIMEHFR- 219 G ++ I+R T R MAV GK A+T+Y+++E F Sbjct: 200 LLGKIETRIARSTTDRKKMAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGR 259 Query: 220 --------VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG----RPRPPKGASEAF 267 T RLETGRTHQIRVHMAHI PL+GD YG + A E Sbjct: 260 IDATSGLPAATLTECRLETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETA 319 Query: 268 ISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 ++F RQALHA +L HP++G + + P+DM Sbjct: 320 THACKEFKRQALHAAILGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 125/317 (39%), Positives = 176/317 (55%), Gaps = 11/317 (3%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V E G+R+D+ L + + SR+ +++ I V V G K +V G V + Sbjct: 3 YIVEEKHNGERIDKFLVGVMENVSRTDVQKLIEAGEVKVGGGKVSK-NFRVETGMAVVVE 61 Query: 69 AEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP-- 125 IE+E+ EP+DIPL+IVYED+DI++INKPR+LVVHPG G GT+ ALL+++ Sbjct: 62 KMIEKESSTLEPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHFKENL 121 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-G 182 + R GIVHRLDKDT GLMVVAK A L L+ R + R Y A+ G Sbjct: 122 STVNGPLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRDLE 181 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 GT+D PI R+P R MAV GK + THY + F + T L L+LE+GRTHQIRVH + Sbjct: 182 GTIDAPIGRNPKNRLKMAVVKGGKESRTHYVAKQFFAIATLLELQLESGRTHQIRVHSRY 241 Query: 243 ITHPLVGDPVYGGRP----RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HP+VGDP+Y GR R P L Q L A + L HP + ++ + Sbjct: 242 TGHPVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLTFK 301 Query: 299 APIPQDMVELIEVMRAD 315 P+ + ++++++ + Sbjct: 302 VPMEEPFANVLKLLKKE 318 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 124/313 (39%), Positives = 176/313 (56%), Gaps = 6/313 (1%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVL-VNGKVCDKPKEKVLGGEQVAI 67 TVS G+RLD LA + SRSRI+ + + V G V + +V GE+ + Sbjct: 13 ITVSTEASGKRLDAVLAAAC-ELSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLL 71 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YP 124 + EP+D+PLDI++EDE +I++NKP +VVHP G+ GT+++ALLH+ P Sbjct: 72 TLPPVKPLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLP 131 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 I V R GIVHRLDKDT+G +V+AK+ RL E + R+Y A G + Sbjct: 132 GINGVERPGIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVK 191 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ PI RHP +R MAV G+ ++T + F +++RL L TGRTHQIRVHMAH Sbjct: 192 CIELPIGRHPHQRQKMAVTDSGRESITDAAVEHIFGPFSQMRLTLHTGRTHQIRVHMAHE 251 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GDPVY P + E + RQALHA +L HPISG M + AP+P+ Sbjct: 252 NLPVLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLPE 311 Query: 304 DMVELIEVMRADF 316 D+ L + + + Sbjct: 312 DLTILHDALTKSY 324 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 115/321 (35%), Positives = 174/321 (54%), Gaps = 11/321 (3%) Query: 1 MAQRVQ-LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M + + L+ V E +RLDQ L+ ++P+YSRS ++ I D V +GK KP KV Sbjct: 1 MNHKDEILSFMVDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKV 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+++ + E +P++IP+DI++EDEDI ++ KP +VVHP G+ GT++NAL Sbjct: 61 RKGQEITLVIPPPETLEIKPENIPVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNAL 120 Query: 120 LHYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 L+++ I RAGIVHRLDKDT GLM++AK+ A L + Q R + + Y AV Sbjct: 121 LYHFRNISEYGGKERAGIVHRLDKDTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVT 180 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAVHPMG-KPAVTHYRIMEHF--RVHTRLRLRLETGR 232 G + G +D PI R R M + A+T Y + T + ++L TGR Sbjct: 181 GIVQNDHGFIDLPIGRSIYNRKKMGTEATNLRDALTEYWVKNRSEKENLTVVDIKLHTGR 240 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIRVH + I HPL D VYG + + IS + AL A + HP +G Sbjct: 241 THQIRVHFSAIGHPLFNDKVYGFKKSQLRSEKMRSISDQTLY--HALLAYRIAFDHPRTG 298 Query: 293 IEMEWH-APIPQDMVELIEVM 312 +++ +P+ + ++IE + Sbjct: 299 EKIDITLQKLPEHISKVIEAI 319 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 124/304 (40%), Positives = 175/304 (57%), Gaps = 19/304 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 RLD+ L P+ SR+RI+++I V VNG + K + G+++ + E + Sbjct: 22 MRLDRWLVSQRPEQSRARIQKFIEAGYVRVNG-TTGRAKTPLRHGDEIKLWMPPPEPLPY 80 Query: 78 -EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IADVPRAG 133 +P+ + LD+++EDE +I+INKP L VHP GN DGT++N LLH+ P I+ R G Sbjct: 81 LQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPG 140 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRH 192 IVHRLDKDTTG +V+AK+ A +L +Q+R +REY AV G GT+ I RH Sbjct: 141 IVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIVGAIGRH 200 Query: 193 PTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 P R AV G+ A TH+ + E ++ LR +L+TGRTHQIRVH AH HP+VGD Sbjct: 201 PVDRKKYAVVSSDNGRYACTHWSLQERLGDYSLLRFKLDTGRTHQIRVHCAHRNHPVVGD 260 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 P Y + P + QALHA L L HPI+G M + AP+P+ + +L+ Sbjct: 261 PTYSRCRKLP-----------IELPGQALHAVQLGLDHPITGERMVFEAPLPEVLEKLLA 309 Query: 311 VMRA 314 V+R Sbjct: 310 VLRK 313 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 103/302 (34%), Positives = 170/302 (56%), Gaps = 21/302 (6%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 ++ G+RLD +AE + +R+RI++ I D + VN K KP KV + + + E+ Sbjct: 9 SEEGKRLDLYIAER-TELTRTRIQQLIKDGNINVNNKK-SKPSYKVEKNDFIEMIIPDEK 66 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP--- 130 E P++I + I+YED DI +I+K +VVHP G+ GT++NA++++ ++ + Sbjct: 67 EIDLVPENINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKDLSGINGEI 126 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPI 189 R GIVHRLDKDT+GL+++AK A RL E I + Y A+ G + G ++ I Sbjct: 127 RPGIVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKESGKLETLI 186 Query: 190 SRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 R P R MAV GK A+T++++++ + +++ ++TGRTHQIRVHM ++ +P++ Sbjct: 187 GRDPKDRKKMAVVKTNGKTAITYFQVLDKNEKFSLVKVNIQTGRTHQIRVHMKYLGYPVL 246 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD VYG + RQ LHA L HP++ M+ + +PQD + Sbjct: 247 GDSVYGRDNKIA--------------GRQMLHAYKLEFLHPVTQKAMKIISELPQDFEKA 292 Query: 309 IE 310 ++ Sbjct: 293 LK 294 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 109/326 (33%), Positives = 174/326 (53%), Gaps = 17/326 (5%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V + Q R+D+ L + + SR++I++ ++LVN + K K+ + V Sbjct: 5 KFKFFVEKYQKTIRIDKFLRKSIQNISRNQIQKATNSGKILVN-QCIIKKNYKIKPFDLV 63 Query: 66 A--INAEI---EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 I E ++IPL+I+YEDEDI++INK +VVHPG GN GT+++ + Sbjct: 64 EAEIYYPPILDSEYKNIIAENIPLNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHGIK 123 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM- 179 +++ + R G+VHR+DKDTTGL+V+AK AQ L + + I R+Y A+ G++ Sbjct: 124 YHFKNNHQLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGNIQ 183 Query: 180 TAGGTVDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 GT+ I R P R M + + +VTHY+++E F+ T + LETG+THQ Sbjct: 184 KQEGTISGFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFKYLTYVSCNLETGKTHQ 243 Query: 236 IRVHMAHITHPLVGDPVYGG-----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 IRVH ++ HPL D YGG + K + + F +L RQALHA L HP Sbjct: 244 IRVHFKYLGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIHPK 303 Query: 291 SGIEMEWHAPIPQDMVELIEVMRADF 316 + + IP+D ++++ +R + Sbjct: 304 -NRKCHFTCSIPEDFKKVLQKLRNQY 328 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 122/328 (37%), Positives = 183/328 (55%), Gaps = 21/328 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 AQ +Q VS + RLDQ L PD SR+R++ I D+++LV+GK KP K+ G Sbjct: 4 AQHIQ----VSADDANIRLDQYLVSHLPDVSRARVQALIDDEKILVDGK-SSKPSYKLRG 58 Query: 62 GEQVAINAE-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPD-----GTV 115 E + + E R P+DIPLD+VYED+D+ +INKP ++VH GAG + GT+ Sbjct: 59 SEVIDVVGEYQPPPLRAIPEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTL 118 Query: 116 LNALLHYYP---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 +NALL+ + + R GIVHRLDK+T+GL+VVAK A +L E R + ++Y Sbjct: 119 VNALLYRFRALSEVGGDMRPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYV 178 Query: 173 AVAIGHMTA-GGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEH----FRVHTRLRL 226 A+ G GT++ PI+R ++RT M G+ A++HY + E + + + Sbjct: 179 ALVHGWPKKLKGTINLPIARDMSRRTRMTTRGSGGRDALSHYEVKEKIESPYGKFALVEV 238 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGG-RPRPPKGASEAFISTLRKFDRQALHATMLR 285 ++ETGRTHQIRVHMA + HP+VGD +YG A + S + +R LHA + Sbjct: 239 KIETGRTHQIRVHMASLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIE 298 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMR 313 L P +G + + +P + + E +R Sbjct: 299 LQQPATGKALRFVTKVPAALEDFAETLR 326 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 127/321 (39%), Positives = 179/321 (55%), Gaps = 22/321 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M Q V L VS G+RLDQ L E +RS +++WI V + K V Sbjct: 1 MNQNVYL---VSVADEGKRLDQFLKER-TGLTRSEVQKWIKAGNVSLLPKKMIHSNYHVS 56 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G++++ E +++ Q+IPLDI+YED D+I+INK R +VVHPGAGN +GT++NALL Sbjct: 57 EGDRISFFWEEKKKQELIGQNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALL 116 Query: 121 HYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 + D R GIVHRLDKDT+G+MV AK+ A L + + + R Y A+ Sbjct: 117 FHCGEQLRSVGDPERPGIVHRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVH 176 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 G M G + P+ R R V H G+PAVTH+ ++E+ ++ + +LETGRTH Sbjct: 177 GQMEGDTGVIRLPLGRSTKDRMKWDVLHETGRPAVTHFHVIEYLPHYSWIECKLETGRTH 236 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHMAHI H +V DP+YG + QALH+ L L HPI+G Sbjct: 237 QIRVHMAHIRHAVVNDPLYGWKKDH------------FPIKGQALHSHTLELCHPITGEV 284 Query: 295 MEWHAPIPQDMVELIEVMRAD 315 M + AP+P+DM+ + + R + Sbjct: 285 MHFEAPVPEDMINCLNLARKE 305 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 363 bits (932), Expect = 5e-99, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 174/315 (55%), Gaps = 9/315 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + S G RLD +A + D SR I + +LV+G+ KP KV + + Sbjct: 7 VALVTSAGHDGLRLDTLVAGQW-DCSRHSAALLIKNGTILVDGRP-QKPSYKVGVNQSIT 64 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 ++ + P+ PL +++ED ++++NKP LVVHP G+ GT++N LLH++P I Sbjct: 65 GRIPSQKPEKPGPEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLHHFPAI 124 Query: 127 ---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-G 182 + R GIVHRLD++T+G +VVAKT A L + + R++ + Y A+ G M + G Sbjct: 125 GTVGEPDRPGIVHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQMKSTG 184 Query: 183 GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 G V PI RH +R M+V P +PA T +++ + F + L L + TGRTHQIRVH Sbjct: 185 GVVTLPIGRHSLERKKMSVSSPQARPAETRWKVRKAFVDASLLELEIHTGRTHQIRVHCT 244 Query: 242 HITHPLVGDPVYGGRPRPPKG--ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + P+VGDP Y + + +S A L RQ LHA L HP++G M + A Sbjct: 245 ALQRPVVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGAPMCFTA 304 Query: 300 PIPQDMVELIEVMRA 314 P+ +D+ E++ ++RA Sbjct: 305 PLFEDIKEMLHLLRA 319 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 133/324 (41%), Positives = 174/324 (53%), Gaps = 16/324 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L V+ ++ RLD+ LA P SRSR+K ILD RV + G P GE + Sbjct: 101 LEVVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAASGETIT 160 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 I+ + I L+IV+ED+DII+I+KPR LVVHP AG+ GT++NAL+ + Sbjct: 161 IDVPPPVAPEPAGEAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGES 220 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVAIGH 178 I V R GIVHRLDKDTTGLMV AK A L E+ R Y A G Sbjct: 221 LSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGA 280 Query: 179 MTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF------RVHTRLRLRLETG 231 GT+D PI RHP R MAV G+ A+TH+ ++E F + + + +LETG Sbjct: 281 PNRIRGTIDAPIDRHPHAREKMAVRDGGREAITHWEVLETFTGRSGGEIVSLIACQLETG 340 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHPI 290 RTHQIRVH+AHI HPL+GD VYG + + L RQALHA +L L HP Sbjct: 341 RTHQIRVHLAHIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPS 400 Query: 291 SGIEMEWHAPIPQDMVELIEVMRA 314 +G + W + +P D+ L + A Sbjct: 401 TGEVVAWESGLPADLKRLKAALTA 424 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 128/338 (37%), Positives = 177/338 (52%), Gaps = 30/338 (8%) Query: 6 QLTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 L + E+ RLD+ALA P+ SRSR+ + I D V + G PK +V G Sbjct: 19 NLRVVIGEDPPD-RLDKALARQVPEDAALSRSRLMKMIADGDVTLEGVAVTNPKARVAEG 77 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 ++ + + +P+DIPL +V+ED D+I+++KP +VVHP G+ GT++NALLH+ Sbjct: 78 QEYLLRLAPAVDIDAQPEDIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHH 137 Query: 123 YPP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + R GIVHR+DKDT+GL+VVAKT A L + +TR Y A+ G Sbjct: 138 CGDTLSGVGGAKRPGIVHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGA 197 Query: 179 M---------------TAGGT--VDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRV 220 GG + ++RH T R AV G+ AVT R++E + Sbjct: 198 PNAADPRLRGIRGVSFEPGGIVCIATNLARHKTDRQRQAVLFDSGRHAVTRVRVLESYGT 257 Query: 221 ---HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDR 276 + LETGRTHQIRVHM+H H L+GD YGGR + PK EA F R Sbjct: 258 PPVAALVECWLETGRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPR 317 Query: 277 QALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 QALHA L HP+SG E+ + +P+P DM L +R Sbjct: 318 QALHAASLGFVHPVSGEELLFTSPLPADMAALTAALRG 355 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 125/328 (38%), Positives = 170/328 (51%), Gaps = 30/328 (9%) Query: 7 LTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 L+ T+ E+ +RLD+ALA P+ SRSR+ + I + V + G PK +VL G+ Sbjct: 11 LSITIGED-PPERLDKALAREAPEEAALSRSRLMKLIAEGAVRLKGVPVTDPKARVLEGQ 69 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY- 122 I E P+ IPL +V+ED D+I+I+KP +VVHP G GT++NALLH+ Sbjct: 70 VYEIVTGAAAEVEALPEAIPLSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHC 129 Query: 123 ---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 I R GIVHR+DKDT+GL+VVAKT A L + + R Y A+ G Sbjct: 130 GASLSGIGGEKRPGIVHRIDKDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVP 189 Query: 180 TAGG-----------------TVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFR-- 219 + I+RH T R AV G+ AVT R++E F Sbjct: 190 EPSDPRLRGIRGVSFEPGGVLRIATGIARHRTDRQRQAVTFEGGRHAVTRARLLERFGTP 249 Query: 220 -VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQ 277 + RLETGRTHQIRVHM+H+ H L+GD YGGR + K F RQ Sbjct: 250 PAAALVECRLETGRTHQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQ 309 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDM 305 ALHA L HP++G ++ + +P+P DM Sbjct: 310 ALHAATLGFCHPVTGEDLSFESPLPADM 337 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 126/314 (40%), Positives = 170/314 (54%), Gaps = 15/314 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +LTA + EN GQRLD+ LA +FPD SR+R++ I + R+ +G+ K G Sbjct: 26 RLTADLPENLAGQRLDKVLAPLFPDLSRARLQALIAEGRLTFDGETVADASRKARAG-VY 84 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY--- 122 ++ A EP+ +PL I+YED +I+++K + VHP G +GT++NALLH+ Sbjct: 85 SLVVPPPAPADPEPEALPLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGA 144 Query: 123 -YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 + V R GIVHRLDKDT+G+MV AK+ A L +I R Y A+ G Sbjct: 145 SLSGVGGVARPGIVHRLDKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNP 204 Query: 181 AGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFR-----VHTRLRLRLETGRTH 234 GT+ I R P R MAV G+ A+THYR+ F + R+ RLETGRTH Sbjct: 205 PTGTIQTQIGRSPGDRKKMAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETGRTH 264 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHMA P +GDPVYG + LR RQALHA +L HPI+G Sbjct: 265 QIRVHMASKGSPCLGDPVYGAAQPAAAVRERIEAAGLR---RQALHAAVLGFVHPITGET 321 Query: 295 MEWHAPIPQDMVEL 308 + + P+P DM L Sbjct: 322 LRFETPLPADMDAL 335 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 111/318 (34%), Positives = 173/318 (54%), Gaps = 11/318 (3%) Query: 8 TATVSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 T T + RLD+ SR ++K+WI +NGK+C KP +K++G E++ Sbjct: 17 TKTAEFSDRNTRLDKFWGTALEEEGISRGKVKDWIKAGFAEINGKICKKPNQKLMGNEEL 76 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E E P+++PL+I+Y D I +INKP L HP P GT+++ ++H++P Sbjct: 77 TLKGEA-ELTSLVPEELPLEIIYNDGKIAVINKPAGLTTHPAPSCPTGTLVHRMIHHFPE 135 Query: 126 IADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 I D+ R GIVHRLDK T+GL+ VA + + + RE+ + Y A+ G Sbjct: 136 IRDMDEWRPGIVHRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKREF 195 Query: 183 GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEH--FRVHTRLRLRLETGRTHQIRVH 239 G +D+P+ RHP +T MAV G+ A + Y ++ + +++++ TGRTHQIRVH Sbjct: 196 GEIDQPMGRHPVHKTKMAVVLKGGRDARSEYEVLWSDPAGRASLVKVKIYTGRTHQIRVH 255 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 MAHI HPLVGD VYG P + ++ L +RQ LHA L HP S E+ + Sbjct: 256 MAHIGHPLVGDQVYGSMPHAIWEQDQPQLAKLA--ERQMLHAYSLSFTHPDSEEELSFTQ 313 Query: 300 PIPQDMVELIEVMRADFE 317 P+D + +++ + + Sbjct: 314 APPEDFINMLKALDKSVQ 331 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 189/323 (58%), Gaps = 16/323 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + + + G+RLD +++ + SR++ +E I + V VN V K K+ + Sbjct: 1 MSILLQTEKADEGKRLDIFISDKL-NISRAKAQEAIEKKFVKVNNYVKTK-SYKIKFNDL 58 Query: 65 VAINAE----IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 + ++ E +E + PQ+IP+ ++Y+D+ +I+++KP +VV+P AG+PDGT++NAL Sbjct: 59 IEVSDEFSLKLENSEKLIPQNIPIQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALA 118 Query: 121 HYYPPIADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 ++ +A+V R GIVHRLDKDT+G+MVVA +LVE+ ++REI +EY A+ G Sbjct: 119 YHVKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYG 178 Query: 178 HMTAGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + G + P+ R R M++ K A+T + ++++F+ +T L++++ TGRTHQI Sbjct: 179 QLRGSGKITTPVGRAIYDRKKMSIKSKKAKEAITEWEVIKNFKNYTFLKVKILTGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH + I HP++GD YG + G + +S RQ LHA + L HPI+ ++ Sbjct: 239 RVHFSSIGHPVIGDKTYGRKTYIEIGNKKIPVS------RQMLHAHKIELIHPITEKLLQ 292 Query: 297 WHAPIPQDMVELIEVMRADFEEH 319 + A +P D+ ++ ++ +E Sbjct: 293 FEASLPDDIQYILNILEDRYESE 315 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 112/335 (33%), Positives = 160/335 (47%), Gaps = 37/335 (11%) Query: 17 GQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 G R+D+ L +P+ SR++I+ I + VNG K V G+++ + + Sbjct: 8 GPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKK-SYGVEPGDEIVFRLIRKPPMQ 66 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY-------------- 122 EP+ IPLD+V+E +D++++NKP +VVHP G+ GT+++ALLH+ Sbjct: 67 AEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDERDE 126 Query: 123 -------------YPPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 167 P D P R GIVHRLDK T+GL+VVAK A L E + + Sbjct: 127 VSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKAHTV 186 Query: 168 TREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRVHTRL 224 R Y A+ G + GT++ I R P R MAV P GK A THY +E + + Sbjct: 187 DRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVETHAHTSVV 246 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP----RPPKGASEAFISTLRKFDRQALH 280 LETGRTHQIRVH HPL+GDP YGG+ + ALH Sbjct: 247 EFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPHPALH 306 Query: 281 ATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 A L HP + + + A P ++ +R + Sbjct: 307 AYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQE 341 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 167/311 (53%), Gaps = 6/311 (1%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEW-ILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V + G + L SR + + ++ V++NG+ V G+ V Sbjct: 9 IEYQVPAAEDGWTVKSVLQRRM-GISRKLLSRIKLTERGVMLNGERVY-ISVPVKAGDTV 66 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 +++ E E P+ IP DIVYEDE ++I+NK L+VHP G+ GT+ N +++Y+ Sbjct: 67 SVSLEKETSTDILPEPIPFDIVYEDEALLIVNKAAGLIVHPTHGHYTGTLANGVVYYWQE 126 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 + R VHRLD++T+GL+ +AK + E L E+T++Y A+ G GT Sbjct: 127 KGEKFRFRPVHRLDQETSGLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHGCPAVPEGT 186 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 +D PI R P + V P G P++T+Y++ E + R+ LRL TGRTHQIRVHM I Sbjct: 187 IDGPIDRDPAEPHRRIVTPSGYPSLTYYKVAEAYGDGARVELRLGTGRTHQIRVHMTSIG 246 Query: 245 HPLVGDPVYG--GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 HPL+GD YG G P A E RQALHA+ L HP++G + + + +P Sbjct: 247 HPLIGDKFYGMPGLAELPAPARERIARLDAAIGRQALHASELGFRHPLTGEALTFKSELP 306 Query: 303 QDMVELIEVMR 313 +DM++L ++R Sbjct: 307 EDMLKLEAMLR 317 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 359 bits (923), Expect = 7e-98, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 21/309 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V + GQRLD LA++ D SRS+IK I +++VLVN K K K+ + +++ Sbjct: 4 FKVDKENFGQRLDVYLAKLV-DLSRSQIKNLIDNEKVLVNKKNV-KAGYKLSEDDVISL- 60 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA- 127 E ++ + + I +++YEDE I +I+KP+DLVVH GAGN GT++N LL+ + Sbjct: 61 -EYPKDNKPFAEKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLS 119 Query: 128 --DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 D R GIVHRLDK+T+GLM++AK A LV+ + +I + Y A+ G G + Sbjct: 120 DLDPLRPGIVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESGII 179 Query: 186 DEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 EPI R+P R MAV K A+T Y+ ++ F+ ++ L + L TGRTHQIRVHMA+I Sbjct: 180 AEPIGRNPNDRKKMAVVYKNSKQAITKYKKLKEFQEYSLLNINLLTGRTHQIRVHMAYIG 239 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 +P++GD +YG + K D+Q LH+ L HPI+ +ME+ P Sbjct: 240 YPVLGDIIYGRKNS-------------LKIDKQMLHSYKLIFNHPITNQKMEFTDEFPIR 286 Query: 305 MVELIEVMR 313 + I+ ++ Sbjct: 287 FKKFIDKIK 295 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 112/333 (33%), Positives = 174/333 (52%), Gaps = 37/333 (11%) Query: 19 RLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 RLDQ L SR R+K+ I+ ++ KVC P ++ G + I E + Sbjct: 17 RLDQFLYNNLCTHGVSRERLKKVIVSGGCKIDDKVCFSPSTRLKVGMHIFIQLP-EVVSA 75 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI--ADVPRAGI 134 P++ L+I++ DE + IINKP L VHP + T+++ LL Y+P + R GI Sbjct: 76 LLPEEGFLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIEQGGLRPGI 135 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPT 194 VHR+DKDT+GL+ +A T + +L + R+I +EY A+ G + G + P+ R P Sbjct: 136 VHRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPSMEGYIAVPLGRDPK 195 Query: 195 KRTHMAVHPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 + +AV+P GKPA T +R++ + ++ L L ++TGRTHQIRVHM HI HPLVGD + Sbjct: 196 TKVKVAVNPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMKHIGHPLVGDKL 255 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 Y G ++ + +RQ LHA L HPI+G +M + P P+D ++ + ++ Sbjct: 256 YAG----------GHVNKTFQCNRQMLHAWKLSFEHPITGKKMNFLCPPPKDFLDTVSLL 305 Query: 313 RAD--------------------FEEHKDEVDW 325 + FE+H D + W Sbjct: 306 EQEPIRIVITGVAGSGKTTVLKYFEQHSDIIIW 338 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 168/309 (54%), Gaps = 21/309 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV--- 65 +S +G+RLD LA SRS+++ I +LVN KP K+ G+++ Sbjct: 14 LIISPEDVGERLDTLLAHKLESVSRSQVQRAIEQGTILVNDHP-SKPSYKLREGDRILIL 72 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 I + E P + L +VYED+ II+I+KP +VVHP G+ D T++NAL+ YP Sbjct: 73 TIPRVPQGEVALIPSYVDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIARYPD 132 Query: 126 IADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 + P R GIVHRLDKDT+GL++VA+ + L ++ R+I +EY + G + Sbjct: 133 LLKQPTDRPGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPE 192 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G ++ PI R RT M+V GK AVT Y ++ +T R TGRTHQIRVH A Sbjct: 193 GRIEAPIGRDLRDRTKMSVIAGGKEAVTEYSTIQSLGKYTLAIARPITGRTHQIRVHFAA 252 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HP+ GDP+YG L +RQ LHA+ L + P +G EWH+P+P Sbjct: 253 IGHPIAGDPIYGN-------------CRLEGLNRQFLHASRLGVVMP-NGEYKEWHSPLP 298 Query: 303 QDMVELIEV 311 +D+ + +E Sbjct: 299 EDLRQSLEK 307 >UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Tax=Magnoliophyta RepID=PUS2_ARATH Length = 430 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 174/358 (48%), Gaps = 49/358 (13%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +++ V + RLD ++ SR+R++ I V VNG+V DK V G++ Sbjct: 69 LRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDE 128 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V + + E +DIPLDIVYED+ ++++NKP +VVHP GNP GT++N +LH+ Sbjct: 129 VNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCS 188 Query: 125 -------------------------------PIADVPRAGIVHRLDKDTTGLMVVAKTVP 153 A R GIVHRLDK TTGL+VVAK Sbjct: 189 LPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEH 248 Query: 154 AQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMG------K 206 + L E + I R Y ++ G G ++ PI R + R MA P G + Sbjct: 249 SHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRAR 308 Query: 207 PAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG--------- 255 A + Y+++E F + RLETGRTHQIR H ++ PL+GD VYGG Sbjct: 309 HAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLL 368 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 + R + E I + + DR LHA +L HP +G +++ P P D+ E++ ++R Sbjct: 369 QKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLR 426 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 127/305 (41%), Positives = 180/305 (59%), Gaps = 21/305 (6%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 Q RLD L + +RS+I I D V+VNG + K K+ +++ +N E +E Sbjct: 7 EQTDSRLDHFLVAS-TELNRSQITTLIKDGLVMVNG-LTTKAGYKLKNSDEITLNLEAKE 64 Query: 74 EAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA----D 128 E +P++I L+IVYED+DI++INKP+ LVVHP + T+++ LLH+ ++ D Sbjct: 65 ETNPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTLSTHNDD 124 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDE 187 R GI+HR+DKDT+GL++VAKT A L + L+ +I REY A+ G + G +D Sbjct: 125 PLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHNKGVIDA 184 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 PI+RHP RT MAV GKPA+TH+ +M FR HT L +LETGRTHQIRVH+A+I HP+ Sbjct: 185 PIARHPKIRTKMAVVATGKPAITHFEVMRTFRDHTLLHCKLETGRTHQIRVHLAYIKHPV 244 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 GDP+YG + + K D Q LHA L HPI+ M AP+P + Sbjct: 245 TGDPLYGTKAKILK-------------DGQLLHAFRLEFVHPITKKVMMLEAPLPPEFES 291 Query: 308 LIEVM 312 + + Sbjct: 292 YLVTL 296 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 357 bits (916), Expect = 5e-97, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 166/321 (51%), Gaps = 22/321 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V E+ G R+D L + YSRS+I++ + + V+G++ +P KV G++V Sbjct: 5 FVVPESANGFRIDLFLTQSCDGYSRSQIRDAVQNDGAEVDGRII-RPSYKVKAGQKVRFR 63 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 P++IPLDI+YED+ +++INKP +VVHP GN GT+ +AL + ++D Sbjct: 64 VPPPASDDTVPENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLSD 123 Query: 129 V---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT- 184 V R GIVHRLD+DT+G++VVAK L R + +EY A+ G + Sbjct: 124 VGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRDW 183 Query: 185 VDEPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 + I RHP +R A+ H K A T Y ++E TR+ +R +TGRTHQIRVH+A Sbjct: 184 IHASIGRHPYQRDKQAIREGHATSKTASTFYEVVERHGRVTRVDVRPKTGRTHQIRVHLA 243 Query: 242 HITHPLVGDPVYGGRPRPPK--------------GASEAFISTLRKFDRQALHATMLRLY 287 HI P++ D +YGG + G RQALHA L Sbjct: 244 HIGCPILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTFT 303 Query: 288 HPISGIEMEWHAPIPQDMVEL 308 +P +G EM AP+P D+ + Sbjct: 304 NPQTGKEMTLTAPLPPDLQAV 324 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 130/317 (41%), Positives = 185/317 (58%), Gaps = 21/317 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L +SE +G+RLD +A++ D +R + I +LV+G KP +V GE Sbjct: 1 MNLKIEISEALMGRRLDLVVADVVHDTTRGAVVRAIEKGLILVSGNR-KKPAYRVKPGEV 59 Query: 65 V--AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V ++ +E E E++ + I LD ++ED+ I+++NKP +VVHPGAGN GT+LNALLH+ Sbjct: 60 VCGSLGSESEIESKPRAESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALLHH 119 Query: 123 YPPIAD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +P + D R GIVHRLDKDT+G +VVAK+ A L + + R + + Y A+A G Sbjct: 120 FPSLTDTHCDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATG 179 Query: 178 HMTA-GGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 +T G + PI RHP R MAV +PA T +R++ HT L + L+TGRTHQ Sbjct: 180 IITETQGRITLPIGRHPIHRKRMAVNTERARPAETLWRVLGQMAGHTLLDVGLKTGRTHQ 239 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVH + HPL GD VYG R + + RQ LHA L HP SG + Sbjct: 240 IRVHFRALGHPLAGDRVYGFRGKQS-----------ARAPRQMLHAGTLGFRHPWSGKRV 288 Query: 296 EWHAPIPQDMVELIEVM 312 E+ AP+P+DMVE++E + Sbjct: 289 EFTAPLPEDMVEVLERL 305 >UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6Q916_9GAMM Length = 311 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 117/307 (38%), Positives = 187/307 (60%), Gaps = 1/307 (0%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TVS+ RLD+ +F D+SR++IK+WIL+ RV +N + P++ V G+ + I+ Sbjct: 6 TVSKEHSKMRLDKVSTIIFEDFSRTQIKKWILEGRVFLNDDIAS-PRDLVHEGDSIQIDP 64 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 EE+ + P++I +D++YE++D +IINK +L++HPGAG GT+ NALLH+YP + ++ Sbjct: 65 IAEEKISWVPEEIDIDVIYENDDYLIINKQPNLIMHPGAGCSSGTLANALLHHYPELKNI 124 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 RAGIVHRLDKDT+G+++VA+ + V+ LQ+RE+T+ Y A+ +G + V +PI Sbjct: 125 ARAGIVHRLDKDTSGVILVARNDKFRNYFVDLLQKREVTKLYSAIVVGTIIGSFKVTDPI 184 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 R R M++ GK + T ++ E ++ L + + TGRTHQIRVH++ P++G Sbjct: 185 GRDKKNRVKMSIRSDGKESETFVKLKESLGNYSLLDISIMTGRTHQIRVHLSSKKLPIIG 244 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D Y KG S I +++F RQALHA L + ++ IP DM LI Sbjct: 245 DNTYNPAKNIAKGTSSKLIDIIKQFPRQALHAYQLSFKDMHTDEFKTFNCDIPDDMKYLI 304 Query: 310 EVMRADF 316 ++++ D Sbjct: 305 DILKKDI 311 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 355 bits (911), Expect = 1e-96, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 9/308 (2%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 ++ + G+R+D ++ ++ D SR IK I + VL+NG+ K +KV + + Sbjct: 6 ITPDIAGERIDVLISNIYKDISREYIKRIIKENGVLINGEKVFKSSKKVFENDVLEFEIP 65 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IA 127 ++ + QDI +DI+YED D+ ++ KP + H G G+ + T++NALL + I Sbjct: 66 PPKKLDVKAQDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLSVIG 125 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 V R GIVHRLD+ T GLMV+AK + +L + +E+ + Y+A+ G T++ Sbjct: 126 GVERPGIVHRLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQTIE 185 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 I RHPT R V GK A+T Y + + + + L +++ TGRTHQIRVHM++I HP Sbjct: 186 TFIRRHPTNRLKFEVANEGKLAITKYSLEKPLKNASLLDIKIYTGRTHQIRVHMSYIGHP 245 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 +VGD +YG + E I R L A L HP S ME+ +P Sbjct: 246 IVGDTLYGYKHSYFDKTLEHMIG-----KRFLLVAYKLSFLHPKSQKPMEFEIDMPDYFK 300 Query: 307 ELIEVMRA 314 +++ + + Sbjct: 301 NVLKYLES 308 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 170/328 (51%), Gaps = 23/328 (7%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV GQRLD L PD SRSR+K + D +V V+ + ++ K+ GGE V + Sbjct: 29 FTVPAEAAGQRLDAWLTTQLPDVSRSRVKLLLDDGQVTVD-SLKERASLKLRGGESVEVR 87 Query: 69 AEI-EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPD-----GTVLNALLHY 122 E R +DIPLDI+YED+D+I++NKP ++VH G+G D GT++NALL Sbjct: 88 GEPAPPPLRAMAEDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGR 147 Query: 123 ---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 R GIVHRLDK+T+GL++VA+ A RL E +REI + Y A+ GH+ Sbjct: 148 QEKLSKTGGDLRPGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHI 207 Query: 180 TAG-GTVDEPISRH--PTKRTHMAVHPMGKPAVTHYRIME----HFRVHTRLRLRLETGR 232 GT++ I+R R + A++HYR+ + T + +R+ETGR Sbjct: 208 AEDRGTINAAIARDVIRRTRMTTRRTEGARTAISHYRVQRRIETRWGKFTLVSVRIETGR 267 Query: 233 THQIRVHMAHITHPLVGDPVYGGRP------RPPKGASEAFISTLRKFDRQALHATMLRL 286 THQIRVH++ I HP+VGD YG + R LHA L+ Sbjct: 268 THQIRVHLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKF 327 Query: 287 YHPISGIEMEWHAPIPQDMVELIEVMRA 314 HP S + AP+P ++V +E + + Sbjct: 328 PHPRSEKPLHLEAPLPAELVAFLEQLES 355 >UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Tax=Magnoliophyta RepID=PUS2_ORYSJ Length = 445 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 169/367 (46%), Gaps = 59/367 (16%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 +L V + R+D ++ SR+RI+ I V+VNG+ K V GG Sbjct: 59 TRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGG 118 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 + V+ + R EP+DIPLDIVYED+ ++++NKP +VVHP GN +GT++NA+LH+ Sbjct: 119 DIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHH 178 Query: 123 YPPIADVP----------------------------------------RAGIVHRLDKDT 142 R GIVHRLDK T Sbjct: 179 CKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGT 238 Query: 143 TGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAV 201 +GL+VVAK + +L E + I R Y ++ G G ++ PI+R P R M Sbjct: 239 SGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIA 298 Query: 202 HPM-----GKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 254 P + A + Y++ E F + RLETGRTHQIR H ++ PL+GD YG Sbjct: 299 TPGSGHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYG 358 Query: 255 G---------RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 G RPR P + + K DR LHA +L HP SG +E+ P P D Sbjct: 359 GTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDF 418 Query: 306 VELIEVM 312 E++ + Sbjct: 419 TEVLNEL 425 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 118/317 (37%), Positives = 165/317 (52%), Gaps = 16/317 (5%) Query: 16 LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA 75 G RLD +A+ SR++ I + VLVNG +K K G+ V + Sbjct: 17 AGGRLDLLVADH-ASVSRTQAATLIANGNVLVNGAR-EKASYKGETGDVVRVTIPPPPGR 74 Query: 76 RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRA 132 + IPLD+VYEDE +++++K +VVHP GN GT++NALL RA Sbjct: 75 DIVAEQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLAEGGGEDRA 134 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDEPISR 191 G+VHRLDKDT+GL+VVAK+ A L +L R++TR Y AV GH+ TV++PI+R Sbjct: 135 GLVHRLDKDTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERITVEKPIAR 194 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 P RT MA+ GK + T + + F LR L TGRTHQIRVH+A HP+VGD Sbjct: 195 DPRDRTRMAIVQSGKASRTDFTRLARFDSVDLLRAHLHTGRTHQIRVHLASTGHPVVGDD 254 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 Y G L R LHA LR HPISG ++ +P+P D+ + Sbjct: 255 TY--------GGGGGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSPLPADLRTSLAA 306 Query: 312 MRA--DFEEHKDEVDWL 326 + + + +D ++ Sbjct: 307 LGSMPELATQQDPLETF 323 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 187/315 (59%), Gaps = 18/315 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MA ++ + T +Q G R+D L++ YSR+ + W++D +LVN + KV+ Sbjct: 1 MANKILIHIT---DQAG-RVDAVLSKENLSYSRTTLSNWLVDGTILVNNHKVKR-SYKVV 55 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ ++I +E + E ++IPLDI+YED+DII++NKP+ +VVHP AG+ GT++NALL Sbjct: 56 SGDTISITPPETQETKIEAENIPLDIIYEDDDIIVVNKPQGMVVHPAAGHSSGTLVNALL 115 Query: 121 HY--YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 H+ I R GIVHR+D+DT+GL++VAK A L E L+ + R Y A+ G Sbjct: 116 HHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVRGE 175 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 T GT++ PI RH R AV G+ AVTH+R+++ + +T L++ LETGRTHQIR Sbjct: 176 FTEDSGTIEAPIGRHKIDRKKQAVIEGGREAVTHFRVLKRYVGYTLLKVSLETGRTHQIR 235 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM++I HP+VGDPVYG + + + Q LHA L L P +G E+ + Sbjct: 236 VHMSYIGHPVVGDPVYGTAQKLDGT----------QLNGQLLHAKTLTLEQPTTGDELSF 285 Query: 298 HAPIPQDMVELIEVM 312 +P+P + + Sbjct: 286 DSPLPDYFQFALSTL 300 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 23/323 (7%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ---RVLVNGKVCDKPKEKVLGGEQ 64 + V E QRLD+ +++ P+YSR+ +++ + D V K+ + E V+ G+ Sbjct: 10 SWVVDEFNECQRLDRYISQQLPEYSRTFLQKSLKDGAFELVRSGAKINARMSENVIEGDF 69 Query: 65 VAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V E +E+ P+DI LDI+YED+DI+++NKP +VVHPGAGN GT++NALL Sbjct: 70 VHYKMPEEADESTLLPEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRD 129 Query: 124 PPI-----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 R GIVHRLDK+T+G+++VAK+ +L S RR++ + Y A+ G Sbjct: 130 LDTFSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGT 189 Query: 179 MT-AGGTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 + T+ I R + R M GK A++HY+++ T ++L+++TGRTH Sbjct: 190 IRVGRDTITSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLADNNGATLVKLKIDTGRTH 249 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM+ I HP+VGD +YG R K + DR LHA R+ HP + Sbjct: 250 QIRVHMSGINHPVVGDKLYGVRRLDEKESP----------DRHILHAWRTRIIHPGTQEI 299 Query: 295 MEWHAPIPQDMVELIEVMRADFE 317 M + AP+ D + + +F+ Sbjct: 300 MTFTAPLHDDFKSVCDKFGIEFD 322 >UniRef50_B6TXP4 RNA binding protein n=3 Tax=Poaceae RepID=B6TXP4_MAIZE Length = 439 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 169/368 (45%), Gaps = 59/368 (16%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 +L V + R+D ++ SR+R++ I V VNG+ K V GG Sbjct: 57 TRLEEAVPVGEGRSRVDAWISARLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHTVKGG 116 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 + V+ + R E +DIPLDIVYED+ ++++NKP +VVHP GN GT++NA+LH+ Sbjct: 117 DLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGTLVNAILHH 176 Query: 123 Y-----------------PPIADVP-----------------------RAGIVHRLDKDT 142 P +D R GIVHRLDK T Sbjct: 177 CKISTFTCLARSSAGDECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGIVHRLDKGT 236 Query: 143 TGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAV 201 +GL+VVAK + RL E + I R Y ++ G G ++ I+R P R M Sbjct: 237 SGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDPNNRIRMTA 296 Query: 202 -----HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 254 H + A + Y++ E F + RLETGRTHQIR H +I PL+GD YG Sbjct: 297 IAGSGHRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYG 356 Query: 255 G---------RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 G RPR P + L K DR LHA L HP SG +E+ P P D Sbjct: 357 GTQSMALSLLRPRSPSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDF 416 Query: 306 VELIEVMR 313 +E++ +R Sbjct: 417 LEVLGELR 424 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 162/311 (52%), Gaps = 17/311 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 ++ TV E GQ + + L + + SR + + NG + EK+ G+++A Sbjct: 6 ISFTVDEADAGQTVREVLQKRY-GVSRRLLIRAKFKGSITRNGVLVF-VNEKLQAGDKIA 63 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E E E P+D+PL I YEDED+++I KP LVVHP +P GT+ N ++ Y+ Sbjct: 64 VMVEEEAEETVAPEDMPLSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIAYWKKR 123 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTV 185 + + V+RLDKDT+GLM+VAK A + Q R + R Y A+ G + GT+ Sbjct: 124 GENRKFRAVNRLDKDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTI 183 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 + PI V P G+ AVTHYR++ + + ++LETGRTHQIRVHM+ H Sbjct: 184 NTPIGLAENSFITRQVRPDGQTAVTHYRVLARGEGMSFVEVKLETGRTHQIRVHMSSEGH 243 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL GD +YGG RQALHA L HP SG+ M W P+P DM Sbjct: 244 PLAGDDLYGGEREH--------------IGRQALHAWGLSFVHPRSGLAMSWEEPLPNDM 289 Query: 306 VELIEVMRADF 316 +L + D+ Sbjct: 290 EQLAQQFFPDY 300 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 160/304 (52%), Gaps = 11/304 (3%) Query: 12 SENQLGQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 ++ +G RLD + D SR+R++ I V+G C KP K+ GGE + +N Sbjct: 18 TDGGVGTRLDVFWSARLADLEVSRARVRAAIEGGLATVDGADCRKPGLKLRGGETLTLNL 77 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 + + + L ++Y D+++ +++KP L VHP G P+GT++N LLH++P + ++ Sbjct: 78 P-QVASETVAEAGSLRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGLREM 136 Query: 130 --PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 R GIVHRLDKDT+GL++VA T P + L R++ + Y A+ G GG + Sbjct: 137 AGERPGIVHRLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIR 196 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHI 243 PI R P RT MAV H G+PA + +R + + L + + TGRTHQIRVHMA I Sbjct: 197 LPIGRDPKYRTKMAVPHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHMAAI 256 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP++GD VYG P + R RQ LHA L HP+ + P P Sbjct: 257 GHPIIGDAVYG--PHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPPPP 314 Query: 304 DMVE 307 D Sbjct: 315 DFWR 318 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 124/315 (39%), Positives = 166/315 (52%), Gaps = 18/315 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V E G RLD LA SRSR + I V +P K+ G+ + Sbjct: 44 VPEEDSGARLDLFLAGELS-LSRSRARSLIDGGAVSSGQVKKIRPAFKIQPGQIYRVEIP 102 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IA 127 A QD+P D+VYED+D+I++NKP +VVHPGAG PDGT++N L+ YP I Sbjct: 103 EAAPAEIAAQDMPFDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLMFRYPEIGRIG 162 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVD 186 D R GIVHRLD T+GLMVVA++ A L E+ Q E+ +EY + +G + A GTVD Sbjct: 163 DSVRPGIVHRLDVGTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVGALKAPEGTVD 222 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI R P R M V G+ AVT Y+++ +R+RL TGRTHQIRVHM + Sbjct: 223 APIGRDPRNRLKMCVSWDGRDAVTDYKVLWTRARCNLIRVRLHTGRTHQIRVHMRALGCS 282 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L GD +YG + DR LH+ L HP+SG +E+ AP+P + Sbjct: 283 LDGDTLYGPKDPAQHILK----------DRVFLHSWRLGFRHPVSGERLEFRAPLPPE-- 330 Query: 307 ELIEVMRADFEEHKD 321 LI +R + +D Sbjct: 331 -LIAALRVPLSQPED 344 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 180/315 (57%), Gaps = 11/315 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 +L TV E+Q G RLD+ + + P SRSR+++WI +L++G VC KP K+ G+ Sbjct: 4 ELLFTVQESQAGSRLDRLVMQNIPRPAPSRSRVQDWIRKGNILLDGTVCLKPAHKLSAGQ 63 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V + EE EP LDIVY D +++++NKP L VHP + +P T+++ LL+ Sbjct: 64 TVQV-LAREENEDLEPVAGKLDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYAC 122 Query: 124 PPIA---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P + D R GIVHRLDKDTTGLMV A A+ L R + + Y A+ G + Sbjct: 123 PGLRLMTDRQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALK 182 Query: 181 AG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEH--FRVHTRLRLRLETGRTHQIR 237 G ++ P++R R +A G+ A T Y++++ + + +++++ TGRTHQIR Sbjct: 183 QDEGIINVPLARDQQSRARVAPSREGRSARTAYKVLKRDPSGLWSLVQVQIFTGRTHQIR 242 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH +H+ HP++GD +YGG G + F+S L K RQ LH++ L + HP+S +E+ Sbjct: 243 VHFSHLNHPVLGDRIYGGTDWDRFGWKKRFLSRLAK--RQLLHSSCLGIMHPVSRQWLEF 300 Query: 298 HAPIPQDMVELIEVM 312 + P+D + + + Sbjct: 301 ISRPPRDFIRTLLWL 315 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 126/312 (40%), Positives = 169/312 (54%), Gaps = 21/312 (6%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 V E G R+DQ +A DYSRS ++ WI + + VNG V KP ++ + V Sbjct: 9 KLIVEEMFDGMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVV-KPNLRLKEDDVVEY 67 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGN-PDGTVLNALLHY---Y 123 EE+ P + LDIVYED+ I+++NKP+ L+VHP T+++ LL + Sbjct: 68 EI-TEEQISIVPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQL 126 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AG 182 + R GIVHR+DKDTTGL+VVAKT A LVE L++R I+REY A+ Sbjct: 127 SDLNGELRPGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQS 186 Query: 183 GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 TVD PI R P R MAV K AVTH+ + E F + LR +L+TGRTHQIRVH Sbjct: 187 ATVDAPIGRDPKNRQRMAVTDQNSKQAVTHFYLAERFNDFSVLRCKLDTGRTHQIRVHAQ 246 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 +I HP+VGD Y + + Q LHA L L HP+S M + A + Sbjct: 247 YIKHPIVGDQTYSYKNTWET-------------NGQCLHAQKLTLTHPVSKEVMTFEAEL 293 Query: 302 PQDMVELIEVMR 313 PQ M ++IE +R Sbjct: 294 PQTMKDVIEEIR 305 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 111/313 (35%), Positives = 169/313 (53%), Gaps = 13/313 (4%) Query: 8 TATVSENQLGQRLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 TA V G RLD + D SR++++ I LV+G++C KP K+ GGE + Sbjct: 18 TAVVDA--AGTRLDAFWSARLASEDISRAKVRAAIEAGLALVDGEICRKPGLKLRGGEAL 75 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E + + +D L ++Y D D++++NKP L +HP + PDGT++N LLH++P Sbjct: 76 TLRLP-ETPSEAKAEDGELKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHFPD 134 Query: 126 IADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AG 182 + + R GIVHRLDKDT+GL++VA+T A+ L R + + Y A+ G + Sbjct: 135 MRAMAGDRPGIVHRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSD 194 Query: 183 GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVH 239 G ++ P+ R P T MAV G+ A + +++ + L + + TGRTHQIRVH Sbjct: 195 GVIELPVGRDPKHPTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQIRVH 254 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 MA + HP+VGD VYG R + + R RQ LHA L HP +G E+ + Sbjct: 255 MAAMGHPIVGDAVYGARQHSD--WTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFCQ 312 Query: 300 PIPQDMVELIEVM 312 P P D L+ ++ Sbjct: 313 PPPADFWRLLLML 325 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 121/308 (39%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 9 ATVSENQLGQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V + G+RLD+ L++ D SRSRI +WI +RV V G +C + K KVL G++V Sbjct: 15 FVVEAGEAGKRLDKFLSDRLADLGVSRSRISQWIRQERVRVAGALCLQGKTKVLNGQKVV 74 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + A + + +P+ P+++VY D D++++NK + VHPG G GT+++ L YP + Sbjct: 75 LLAPSLQ-SGIKPEVGPVEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPEL 133 Query: 127 A--DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 A D R G+VHRLDKDT+GL+ VA A+ L S RRE+ +EY + G A GT Sbjct: 134 ARFDGERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRPEAEGT 193 Query: 185 VDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMA 241 VD P+ R P + MAV P GK A+T ++ + + LR+R+ TGRTHQIRVHMA Sbjct: 194 VDHPLGRDPQSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRTHQIRVHMA 253 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 ++ PLVGD +YG + + S ++ L K LHA L HP SG + + Sbjct: 254 YLGFPLVGDALYGPQAQAAFQRSRPLLARLAKH--HMLHAWRLAFPHPRSGRMVCCEQAM 311 Query: 302 PQDMVELI 309 P+ M L+ Sbjct: 312 PKAMWRLV 319 >UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae RepID=Q2IJ40_ANADE Length = 353 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 121/318 (38%), Positives = 172/318 (54%), Gaps = 10/318 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + T V G RLD AL + P+ SR+R++ + RV V+G K ++ GGE + Sbjct: 23 RRTLHVPPELAGARLDAALVRLAPELSRARVQRLVEAGRVQVDG-RAAKASARLRGGEAI 81 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP- 124 A+ E + QD+PL +++ED D+I+++K +VVHP G P TV+NALLH Sbjct: 82 ALEIPPPEPSGLVAQDLPLAVLHEDADLIVLDKAPGMVVHPARGTPHSTVVNALLHRLGL 141 Query: 125 -----PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 P +PR G+VHRLDKDT+G +VVAKT A L + R + + Y A+ G + Sbjct: 142 PAAAGPDGALPRLGLVHRLDKDTSGCLVVAKTEAALAALQAQWKGRSVEKVYLALCHGAL 201 Query: 180 TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFR-VHTRLRLRLETGRTHQIR 237 A G +D P RHP R + A+T +R+ E F + + L TGRTHQIR Sbjct: 202 AAAGRLDTPYGRHPRDRLRFTGRLASSRRAITEWRVREAFGPAASLAEVTLHTGRTHQIR 261 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 VH++ HPL+GD VYGG R + A + RQALHA L L HP +G + Sbjct: 262 VHLSEAGHPLLGDAVYGGTRREARLAPDDPARRAAEAVGRQALHALRLGLDHPRTGRRLV 321 Query: 297 WHAPIPQDMVELIEVMRA 314 AP+P D+ +E++RA Sbjct: 322 VEAPVPADLRAALEILRA 339 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 165/312 (52%), Gaps = 17/312 (5%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPK-EKVLGGE 63 ++ T ++ RLD +A+ D SRS + + D+ V VNG KPK KV G+ Sbjct: 4 IEKTIKLNVETGNMRLDAYIADN-TDISRSFAERLVTDEFVKVNG--VSKPKKYKVKSGD 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + I+ EE P + ++I+Y+ ++ +INKP + VHP G+ D T++NA+L + Sbjct: 61 SIVIDVPREEVPELTPVKMDIEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAMLAEF 120 Query: 124 PPIADVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA- 181 D R GIVHRLDKDT+GLM+VAK ++ L + R+I + Y AV G Sbjct: 121 DITDDNDLRPGIVHRLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKEL 180 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 T+++PI RH R M V G+ + + R+++ +R+ TGRTHQIRVHM+ Sbjct: 181 EFTIEQPIGRHYKDRKRMCVREDGRYSKSGVRVLKQNNNAFLAEIRIFTGRTHQIRVHMS 240 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H PL GD VYG R S RQALH+ L P +G +M + +P+ Sbjct: 241 HAGFPLAGDVVYGHRQ-----------SLKLPIKRQALHSFRLAFVSPFTGEDMVFESPL 289 Query: 302 PQDMVELIEVMR 313 P DM ELI ++ Sbjct: 290 PLDMKELIIGLK 301 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 124/334 (37%), Positives = 174/334 (52%), Gaps = 24/334 (7%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 R LT + G RLD+ L+ + P SRS ++ I D V +G + P+ V G Sbjct: 2 NRKTLTFQIEAGDAGTRLDRCLSRLIPGESRSFLQRLIRDGLVKADGVALEVPRYPVRAG 61 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 +A+ EE + I+YED+ +++I+KP +VVHP AGNP GTV+NALL Sbjct: 62 MSIAVELPEEESPEPAAEPFEFPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGR 121 Query: 123 YPPIAD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 YP +A+ R GIVHRLDKDT+G + VAKT AQ +L + RE + Y A+ G Sbjct: 122 YPQLAEQLACTTSRPGIVHRLDKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRG 181 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEH----FRVHTRLRLRLETG 231 G + I RHP R MAV GK A+T YR+ L +R+ TG Sbjct: 182 VPIRRSGELSTLIGRHPVSRQKMAVVERNGKLAITRYRVEYTGMLDGVEIGVLAVRILTG 241 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH+A + P++GD VYGG + +RQ LHA L + HP + Sbjct: 242 RTHQIRVHLASLGVPVLGDAVYGGART-----------AVAGVERQLLHAWKLCVPHPAT 290 Query: 292 GIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDW 325 G ME+ AP P+D+ ++E R + ++ D+ Sbjct: 291 GTPMEFTAPPPEDIRRILE--RIGVKTLREPADF 322 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 96/312 (30%), Positives = 167/312 (53%), Gaps = 18/312 (5%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++L + ++ RL+ L E+ SR I++ + R+ VNG + + Sbjct: 8 IKLKVEIETEEI--RLNHYLKEVAQCSSR-FIRKAAREGRIKVNGNNARL-SYMLTNNDI 63 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V + +EE P+ + LDI+YED DII++NKP+ +VVHP + +GT+ N +L+Y+ Sbjct: 64 VELQINRKEEQDIIPEKMDLDIIYEDNDIIVVNKPKGIVVHPTKRHLNGTLSNGVLYYFN 123 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 + +V+RLD DT+GL+++AK + L +Q+ + ++Y A+ G+ G Sbjct: 124 DKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSG 183 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D+PI R + G+ ++T ++++E ++ + + L LETGRTHQIRVH++ I Sbjct: 184 VIDKPIYRVGEGTLKRIIDERGQRSITLFKVIEQYKNASLVELTLETGRTHQIRVHLSSI 243 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP+ GD +YG + DRQALHA L++ HP G ++ + +P+ Sbjct: 244 GHPIYGDSLYG-------------EEEPQYIDRQALHAYKLQIPHPKDGKILKLESSLPE 290 Query: 304 DMVELIEVMRAD 315 DM LI + + Sbjct: 291 DMKNLIRKLSEE 302 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 163/322 (50%), Gaps = 16/322 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L TV + G+ + L + S IK+ ++L N + V + Sbjct: 1 MNLKYTVDKETSGKTVKHILKKQLK-LSERLIKKLKRQGKILCNNRPVY-VNAVVCENDI 58 Query: 65 VAINAEIEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + ++ + ++ F +P+DIP+DI+YEDE +I +NK +VVHP +P GT+ NA+ + Sbjct: 59 IEVDLDFDDSGIFIQPEDIPIDIIYEDEFLIALNKQPGIVVHPTCSHPGGTLANAVAFHL 118 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 V + V RLD+DT+G+++ AK Q L+ + + +EY + + Sbjct: 119 QKKGIVKKIRPVIRLDRDTSGIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLENDN 178 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 GT+D PI+R P + P G PAVTHY ++E T ++ RLETGRTHQIRVH Sbjct: 179 GTIDLPIARKPGSIMLRHISPDGDPAVTHYTVLERLNGATLVKFRLETGRTHQIRVHCQA 238 Query: 243 ITHPLVGDPVY----------GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 I HPL+GD +Y G P + + + S + RQALH+ HP + Sbjct: 239 IGHPLLGDTLYPFEDTPYSLSGNNPHITQANTPSITSGI--ITRQALHSQRAVFLHPFTK 296 Query: 293 IEMEWHAPIPQDMVELIEVMRA 314 +E APIP+DM +E++R Sbjct: 297 KILEITAPIPEDMKSALEILRK 318 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 133/314 (42%), Positives = 168/314 (53%), Gaps = 21/314 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI- 67 TV RLD+ LA + +SRSR++ WI V VNG K ++ V G+ +A+ Sbjct: 24 ITVPAGTRADRLDKILAALLDGHSRSRLQGWIEAGWVQVNGAPA-KVRQVVGPGDVLAVW 82 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E F P+ I +V E D I+++KP LV HPGAGN GT+LN LLH YP +A Sbjct: 83 EQPAPESLAFTPEPIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELA 142 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 V RAGIVHRLDKDT+GLMVVA+ AQT LV LQ R + REY A+A G + G VD Sbjct: 143 RVARAGIVHRLDKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHGWLPVAGKVDR 202 Query: 188 PISRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRV----HTRLRLRLETGRTHQIRVHMA 241 PI R M+V KPA+THY + R T + RLETGRTHQIRVH+A Sbjct: 203 PIGRDARVPVRMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGRTHQIRVHLA 262 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HPL+ D +YGGR RQ LHA L P G + A Sbjct: 263 SLGHPLLADTLYGGR-------------LTAGATRQMLHARALHFDDPGGGGPAAFRADP 309 Query: 302 PQDMVELIEVMRAD 315 P DM ++ E ++ Sbjct: 310 PDDMRQVQEALQWS 323 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 346 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 21/316 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M ++ + +S ++ QRLD L+ + ++S+ ++ IL Q+VLVN K K + Sbjct: 1 MNEKKEFL--ISASEAFQRLDHFLSAHI-NLNKSQCQKLILAQQVLVNTK-SSKKSYLLK 56 Query: 61 GGEQVAINAEIEEEARF--EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 + + + E+ PQ++ LDI+YED + +INKP +LVVHP T++N Sbjct: 57 PQDLITVIIPQTHESINLQTPQNLNLDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNG 116 Query: 119 LLHYYPPIA--DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 LLH + ++ D R GIVHRLDK+TTGL++VAKT +L + Q+R+IT+ Y A+ Sbjct: 117 LLHQFNTLSHIDTQRPGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIE 176 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G + G + PI R+ R M V P GK AVTH++ ++ F + + LETGRTHQ+ Sbjct: 177 GFLEDKGIIKLPIGRNNHNRLKMQVMPDGKTAVTHFKTLQRFSHFSLMECNLETGRTHQL 236 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 R H + + HP+VGD +Y Q LH+ +L+ HPI+ + Sbjct: 237 RAHFSFLKHPIVGDLLYDSSHHITPLG-------------QFLHSKILKFNHPITNQNLI 283 Query: 297 WHAPIPQDMVELIEVM 312 AP+P + +L++ Sbjct: 284 LEAPLPTNFEKLLKTF 299 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +L ++ Q G+RLD+ L P+ SR+ +++ + V+G +P K+ G+ V Sbjct: 3 RLQLKITAGQAGKRLDRILGATVPELSRAALQKVVQAGCCTVDGLPEKRPAAKMRMGQTV 62 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ E R +P++ L+++++D+ +++ NKP L VHP P+ T++ LL +P Sbjct: 63 TLDLP-EHPDRLQPEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRFPQ 121 Query: 126 IA--DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 ++ + R GIVHRLDKDT+GL+VVA T L + R++ +EY A+ G G Sbjct: 122 LSRLEGQRPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLPPLEG 181 Query: 184 TVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRV 238 EP+ RHPT + MAV P G+ A T +R + + + L +R+ TGRTHQIRV Sbjct: 182 QCREPLGRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGRTHQIRV 241 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HM H+ +PL+GD +Y + + RQ LHA L HP SG +M + Sbjct: 242 HMTHLGYPLLGDRLYAPK------------AVQNMAPRQMLHAWRLGFTHPASGEDMRFT 289 Query: 299 APIPQDM 305 P P DM Sbjct: 290 CPPPHDM 296 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 108/319 (33%), Positives = 162/319 (50%), Gaps = 11/319 (3%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + T TV + G R+D L + F Y+ RI + V ++G+V ++V G+Q Sbjct: 4 LSKTVTVEKYLAGVRVDSFLVKHFRSYTSWRILRMVAAGLVTIDGQVAA-TTQRVHPGQQ 62 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V I + P+ PL+I++ED+ +++INKP L+ HP PDGT++NA+ HY Sbjct: 63 VTIQLTEPPDLFVPPEPTPLEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAVQHYLD 122 Query: 125 PIA---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + + R GIVHRLD+DT+G M + K + L Q I++ Y A+ G +T Sbjct: 123 KQSTHPGLERPGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTD 182 Query: 182 GG-TVDEPISRHPT-KRTHMAVHPMGKPA---VTHYRIMEHFRVHTRLRLRLETGRTHQI 236 +D PI R P M+ A T R++E F HT + + TGR HQI Sbjct: 183 DQLVIDLPIGRAPGCSSALMSCRADALEAQASKTSLRVVERFPQHTLVEAKPRTGRMHQI 242 Query: 237 RVHMAHITHPLVGDPVY--GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 R+H+A I P+VGD Y GG RP + +RQALHA L HP++ Sbjct: 243 RIHLATIGFPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEW 302 Query: 295 MEWHAPIPQDMVELIEVMR 313 ++ AP+P D+ + IE+ R Sbjct: 303 QDFQAPLPDDLRQAIELAR 321 >UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057H9_BUCCC Length = 321 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 126/318 (39%), Positives = 198/318 (62%), Gaps = 3/318 (0%) Query: 1 MAQRVQLTATVSE-NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M+ ++ V + + RLD+ L + +SRS IK+WIL + VN +KPK+K+ Sbjct: 1 MSNLKKINFIVPKLKEKSIRLDKILVKHLNSFSRSSIKKWILSGFIKVNNITANKPKKKI 60 Query: 60 LGGEQVAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 L +++++ + + + ++I L+I++ED +I+IINKP + VVH G GN GT+LNA Sbjct: 61 LFKDRISLIINKKSNFIKIKKENIFLNIIFEDSEILIINKPTNFVVHLGYGNTSGTLLNA 120 Query: 119 LLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 L+ +YP +PRAGIVHRLD++TTG++VVAKT+ L+ ++R+I +EY+ + IG Sbjct: 121 LIFHYPDNLLIPRAGIVHRLDRNTTGILVVAKTISTYYFLINLFKKRKIIKEYDVIVIGR 180 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 + G +++PI R RT M V GK A+T+Y ++ F+ HT LR++L+TGR HQIRV Sbjct: 181 IEVDGKIEKPIKRDIYNRTKMTVGIGGKQAITYYSVITIFKNHTYLRIQLKTGRMHQIRV 240 Query: 239 HMAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 H++ I HP++GD +Y G S+ + L KF+R ALHA ML HP + + W Sbjct: 241 HLSSIFHPVLGDKIYSKGIKSNFSNCSKKMKNFLSKFNRPALHARMLNFIHPKTNKKKNW 300 Query: 298 HAPIPQDMVELIEVMRAD 315 P+DM+ LI V+ ++ Sbjct: 301 IIYPPKDMLSLINVLYSE 318 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 170/312 (54%), Gaps = 20/312 (6%) Query: 11 VSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V +GQRLD RSR++ WI D R +NG+VC K +++ G+ + + Sbjct: 8 VGVADVGQRLDVFWQTCLEEEGVGRSRVQAWIKDGRARINGQVCSKAATRLMPGQTLTLA 67 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI-- 126 E ++ P D PL++ + DED++++NK + VHP + T+++ + H++P + Sbjct: 68 PEYT-DSSVVPDDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEPTLVHRVAHHFPALLS 126 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 R GIVHRLDKDT+GL+V+A + A+ L ++ RE+ +EY A+ G + GTV Sbjct: 127 QSGERPGIVHRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPDSSGTVS 186 Query: 187 EPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAHI 243 + RHP+ +T MAV G+ A T + ++ + +R+R+ TGRTHQIRVHMA + Sbjct: 187 LALGRHPSIKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGRTHQIRVHMAAL 246 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL+GD VY + + RQ LHA LR HP S ME+ AP P Sbjct: 247 GHPLLGDAVYADKQTAARA------------PRQMLHAWQLRFEHPRSFESMEFCAPPPD 294 Query: 304 DMVELIEVMRAD 315 D ++++ + + Sbjct: 295 DFLQVLRELCRE 306 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 105/318 (33%), Positives = 168/318 (52%), Gaps = 33/318 (10%) Query: 19 RLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA------- 69 RLD+ L E+ DYSRS I++ I ++ + VN ++ V Q+ I Sbjct: 14 RLDKLLVELLTSYDYSRSYIQKLIKEECISVNNQIITSNNFLVKPNSQIIITIKDPVLDP 73 Query: 70 -------EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH- 121 + + + +DI L+I+Y+D+D+++INK ++ VHP N + T++NALL Sbjct: 74 NITKNKDPVLDPNITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLAS 133 Query: 122 --YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 I R GIVHR+DK TTGL++VAK L E + +I +EY A+ G + Sbjct: 134 DVELSSINGELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVI 193 Query: 180 TA-GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 G +D PI R T R M+V K A+T + ++E F +T ++ +++TGRTHQIR Sbjct: 194 KPNKGLIDAPIGRSQTDRKKMSVTAKNSKHAITTFEVVERFLKNTLIKCQIQTGRTHQIR 253 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH +I HP++ DP+YG + + Q LHA L+ HPI+ E+E Sbjct: 254 VHFNYINHPVLNDPIYGKKHQEFTDFG------------QYLHAYKLKFTHPITKKEIEL 301 Query: 298 HAPIPQDMVELIEVMRAD 315 +P+P++ + I+ +R + Sbjct: 302 ISPLPKEFDDKIKELRGE 319 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 118/312 (37%), Positives = 163/312 (52%), Gaps = 13/312 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKVLGGEQV 65 L V + G+ + L SRS + L + + VNG KV G+ V Sbjct: 13 LAVEVGADMAGKDVRTVLERKL-GVSRSLLSRLKLTEYGITVNGVRAYTTA-KVTEGDSV 70 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 AI E E PQD+PL IV+ED+ ++++NKP ++VHP G+ T+ N ++H++ Sbjct: 71 AIRMEEEISEDILPQDLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIVHHWQV 130 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGT 184 + R VHRLD+DT+GL+V+AK +L E LQ I + Y A G A GT Sbjct: 131 RGERVRFRPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGT 190 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAH 242 V PI R+P V P G P+VTHY+ F +++RL+LETGRTHQIRVHM H Sbjct: 191 VGAPIDRNPEDPHVRIVTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQIRVHMKH 250 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I PL+GD +YG + A RQALHA L L HP++ EW A +P Sbjct: 251 IGCPLIGDGMYGLQTGKVDEWETA-------AGRQALHAETLGLTHPMTKEWSEWTAALP 303 Query: 303 QDMVELIEVMRA 314 D+V+L +R Sbjct: 304 PDLVQLELALRE 315 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 170/298 (57%), Gaps = 26/298 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKV-CDKPKEKVLGGEQVAINAEIEEEAR 76 +R+D+ + + + SR+ IKE I V +N V K V G+++ I + +E + Sbjct: 18 ERIDKYIGQN-SELSRNDIKELIEQGAVYINDNVQVHKCNYIVREGQEITIVKLLNKEIK 76 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP----PIADVPRA 132 EP +IPLDI YED+D++IINKP +LVVHP G+ + T++N LL+++ + R Sbjct: 77 IEPVNIPLDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGLLRP 136 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISR 191 GIVHR+DKDT+GL+++AK L + L+R EI R Y A+ G + T ++ PI+R Sbjct: 137 GIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLPIAR 196 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPL 247 + R M+VH GK A+T +++HF + +R L+TGRTHQIRVH+++I HP+ Sbjct: 197 NTVDRKMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIRVHLSYIKHPV 256 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 GDP YG Q LHA L+ HP++ E+ +AP+P++ Sbjct: 257 YGDPTYGKSVDEFN---------------QRLHAYKLKFIHPLTKKEICVYAPVPKEF 299 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 341 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 157/312 (50%), Gaps = 15/312 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 V + G RLD L+ + SRS + I V GKV K V+ G+ Sbjct: 3 SRRIVVEPSDAGNRLDLYLSGQL-ELSRSAVGRLISGGLVSGVGKV--KASRVVVSGDWF 59 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ E PQD+P VY D+ + ++ K + VHPGAG DGT++N L+ + P Sbjct: 60 DVSMPEPSEESVVPQDVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGP 119 Query: 126 IADV-PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GG 183 + R GIVHRLD T+GLMVVA+T A L +R + + Y A+ G + A G Sbjct: 120 LPGAGLRPGIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQG 179 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 T+D PI R R MAV G+ AVT YR + + R+ETGRTHQIRVHMA I Sbjct: 180 TLDGPIGRSRYDRLKMAVRADGRRAVTRYRTLWTRGSLSLTACRIETGRTHQIRVHMASI 239 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 L GD +YG + +S R LHA L +HP G M + +P+P Sbjct: 240 GCYLDGDRLYGPKD----------VSRHFLEGRVFLHAWRLSFHHPSDGRTMNFRSPLPD 289 Query: 304 DMVELIEVMRAD 315 +++ +++ +R++ Sbjct: 290 ELIGVLKKIRSE 301 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 119/325 (36%), Positives = 168/325 (51%), Gaps = 16/325 (4%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 A++ + G RLD+ A D SR R++EWI LV+G+V + K K+ Sbjct: 13 AEKRTWERVAPSSDCGLRLDKFWARELADEGVSRGRVQEWIESGLALVDGEVVTRGKHKL 72 Query: 60 LGGEQVAINAEIEEEARFEPQDIP--LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G E + I + Q +P L++V+ED + +I+K L HP G P T++N Sbjct: 73 AGRETLRIGDAGVAPSDDAAQAVPGELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVN 132 Query: 118 ALLHYYPPIA------DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 LLH +P +A D R GIVHRLDKDT+GLMVVA T + RL R + + Y Sbjct: 133 HLLHRWPDVASDISGMDRQRPGIVHRLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVY 192 Query: 172 EAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLR 227 AV +G GT+D P+ RHP+++T MAV G+ AV+ YR++ + + + +R Sbjct: 193 LAVVLGRPAQPAGTIDAPMGRHPSQKTRMAVVARGGREAVSDYRVLWTGPRGLASLVAVR 252 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 + TGRTHQIRVHMAHI HPL+GD YG R ++ L RQ LHA L Sbjct: 253 IHTGRTHQIRVHMAHIGHPLLGDSAYGPRENVEWSRRPDRLAGLA--PRQMLHAFHLSFR 310 Query: 288 HPISGIEMEWHAPIPQDMVELIEVM 312 HP + + P D L+ + Sbjct: 311 HPATCERVTLWRRPPADFCTLLAAL 335 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 92/311 (29%), Positives = 162/311 (52%), Gaps = 18/311 (5%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +++ + E ++ RL+ L SR I++ + R+ VN + + + Sbjct: 8 LKIKVQIDEEEI--RLNHYLKNHANCSSR-FIRKAAREGRIKVNNENVRL-SYMLKNDDV 63 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + EE P+ + LD++YED+DI++INKP+ +VVHP + +GT+ N +L+Y+ Sbjct: 64 IELQINREENQDIVPEKMHLDVIYEDKDIVVINKPKGIVVHPTKRHQNGTLSNGVLYYFK 123 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GG 183 + +V+RLD DT+GL+++AK + L +Q+ + + Y A+ G++ G Sbjct: 124 EKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHGNLKEKSG 183 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +++PI R + G+ +VT ++++E + + L LETGRTHQIRVH++ I Sbjct: 184 VINKPIYRVGEGTLRRVIDERGQRSVTRFKVVESYEDADLVELTLETGRTHQIRVHLSSI 243 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP+ GD +YG DRQALHA L++ HP G ++ + +P Sbjct: 244 GHPIYGDSLYGKEEH-------------EYIDRQALHAYKLQIPHPKDGRILKLESDLPD 290 Query: 304 DMVELIEVMRA 314 DM LI ++ Sbjct: 291 DMKNLISKLKK 301 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 165/316 (52%), Gaps = 22/316 (6%) Query: 16 LGQRLDQALAEMFPDY-SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 G RLD+A+A + P+ +RSR + VL+NGK K + + + I E Sbjct: 2 SGLRLDKAMA-LIPEIGTRSRASHLLESNSVLLNGKPA-KASVAIKENDLIEIQLPEPEP 59 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPR 131 +P D+ LD+++EDED+I+INKP LVVHP AG+ T++NAL+H+ R Sbjct: 60 TELQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGEER 119 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPIS 190 GIVHRLDK+T+G++V+AK A L + R R Y AV +G T G+V ++ Sbjct: 120 PGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSFLA 179 Query: 191 RHPTKRTHMA----------VHPM-----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 RHP R A P GK AVTH+ +++ + L+L+LETGRTHQ Sbjct: 180 RHPVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQRKSGMSYLKLKLETGRTHQ 239 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVHM+ P+ GD +YG + + A LR R LHA L HP + M Sbjct: 240 IRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTKERM 299 Query: 296 EWHAPIPQDMVELIEV 311 + P+D++ LI+ Sbjct: 300 FFTKDWPEDVLVLIKK 315 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 20/308 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 TV + L S +++++ +VL+NG + V G++++ Sbjct: 2 FKLTVPFATTSTSVRDFLKS--AGISLTQLRKIKRQGQVLINGHPVKSFQTPVSSGDEIS 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 I+ +++ P +PL IVYED+ ++I+NKP L+VHP + + T+ + +L+Y Sbjct: 60 IDYG--DDSCLTPMKMPLHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSK 117 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTV 185 + +HRLD++T+GL+ +AK Q L + + R Y AV G ++ G + Sbjct: 118 GALGAFHPIHRLDRNTSGLVAIAKHPHIQHALSGGGAKG-LKRLYLAVVTGIPSSLMGRI 176 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D PI RHP V G+PA+T YR++ F + + + L L TGRTHQIRVH++HI H Sbjct: 177 DAPIGRHPNSIIKRVVRSDGQPAITLYRVLSTFSMASLVELELLTGRTHQIRVHLSHIGH 236 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +YGG RQALHA L HP + + +P+P D+ Sbjct: 237 PLLGDDLYGG--------------ATDLIRRQALHAASLSFRHPATDKVLTLTSPLPPDL 282 Query: 306 VELIEVMR 313 +LI+++R Sbjct: 283 ADLIQLLR 290 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 123/337 (36%), Positives = 170/337 (50%), Gaps = 36/337 (10%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + +AT+ RLD LA SRS++ WI V V G+ K K+ Sbjct: 1 MSSLLSFSATMG------RLDAVLAA-LSGASRSQVAAWIAGGHVKVEGQPVTKVSLKLR 53 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGE++ ++ +AR E +D+PLD++YED+ +I +NKP +V HP G GT++NALL Sbjct: 54 GGERIDVSPPALPDARVEAEDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALL 113 Query: 121 HYYP-------PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 173 P R GIVHRLDKDT+G++VVAKTV A RL + + RE + Y A Sbjct: 114 GRMPLPEQPDYDSEAGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLA 173 Query: 174 VAIGHMTAGG--TVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIME-----HFRVHTRLR 225 +A G A G V+ PI RHP +R M V + A T + + H R +R Sbjct: 174 IAAGQWRADGPARVEAPIGRHPVQRQRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVR 233 Query: 226 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLR 285 + TGRTHQIRVH+AH+ P++GD VYG R ALHA L Sbjct: 234 AQPRTGRTHQIRVHLAHLGSPILGDAVYGRSSETML--------------RHALHAHFLS 279 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDE 322 + HP +G + HAP P DM+ + +E Sbjct: 280 VPHPGTGRLLHLHAPAPDDMLNAWIALGGAMPSDLEE 316 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 164/315 (52%), Gaps = 20/315 (6%) Query: 1 MAQRVQ-LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M Q+ + L ++E Q GQ L L S+ I++W+ Q++ VN + V Sbjct: 1 MNQKGRGLEILINEKQDGQWLFSVLKTALK-ASKPVIQDWMSHQQIKVNHESVL-NNMIV 58 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G++V I+ + E + P+ LDI++ED ++IINKP + HP GT+ N + Sbjct: 59 KKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLI 118 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 ++Y + + VHRLD+DT+G +V AK A L + L+++ + R Y A+A G + Sbjct: 119 AYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKL 178 Query: 180 -TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQI 236 T GT++ PI R + T V P G+ AVTH+++M + + L LETGRTHQI Sbjct: 179 RTKKGTINSPIGRDRSHPTRRRVSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH+A + HPL GD +YGG + +RQALHA ++ HPI+ + Sbjct: 239 RVHLASLGHPLTGDSLYGGGS--------------KLLNRQALHANKVQAVHPITDELIV 284 Query: 297 WHAPIPQDMVELIEV 311 AP P DM L Sbjct: 285 AEAPFPADMKNLCRT 299 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 165/312 (52%), Gaps = 16/312 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV + R D+ LA ++SR ++ V G + V G+ + Sbjct: 5 TYTVPDTIRHGRADKVLAAGVTEHSRVALQRSFDAGLVTRGGVPIGR-DTTVTAGDTIEF 63 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----Y 123 + + + DIPL +++ED+ ++ +NK +VVHPG + T+++ALL + Sbjct: 64 SFAEIKPTEIKAVDIPLTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSL 123 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AG 182 I V R GIVHRLDK+TTG++VVAKT A L + R + +EY A+ G Sbjct: 124 SGIGGVERPGIVHRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLS 183 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIRVHMA 241 G++D I+RHP R M V G+PA T + ++E F +R R+ TGRTHQIRVH+ Sbjct: 184 GSIDRAIARHPVHRHRMTVGEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLK 243 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HP++GD +YG +P P A R LHA L L HPISG E++ AP+ Sbjct: 244 SLGHPILGDALYGWKPEPRLATQPA---------RVMLHAEHLVLTHPISGKELDLRAPL 294 Query: 302 PQDMVELIEVMR 313 P+D V +I+ +R Sbjct: 295 PKDFVAMIKELR 306 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 21/306 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V EN+ G L+ L +S+ I+ + +LVNG + K + G+ + Sbjct: 1 MRLVVGENEKGVILENFLRN--KGFSKRLIRIYKWQGEILVNG-IKSNVKRILQPGDVID 57 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E ++ P+ + LDI YEDE+I+I+NKP ++VVHP GT+ N + Y+ Sbjct: 58 LILP-ENDSNIAPEKLDLDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAWYFKEK 116 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 V+RLD+ T+GL+V AK Q L + +T+ Y AV G M G +D Sbjct: 117 GLKALIRPVNRLDRGTSGLVVFAKRPFMQYYLQ---IIKPMTKLYFAVVEGKMEGEGRID 173 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PISR P V G A+T+Y++++ + + L++++ETGRTHQIRVH++HI HP Sbjct: 174 LPISRKPQSGIERMVSEEGDRAITNYKVVKSSKRFSLLKVKIETGRTHQIRVHLSHIGHP 233 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 +VGD +YG RQALHA L HP+ + ++P+PQD+ Sbjct: 234 IVGDTLYGSSDDY--------------IKRQALHAYRLTFVHPLEEKSISVYSPLPQDIQ 279 Query: 307 ELIEVM 312 L+++ Sbjct: 280 NLLKLF 285 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 162/313 (51%), Gaps = 11/313 (3%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V++ QR+D+ ++ + SR+R + I +V ++G+V + G+ I Sbjct: 7 VCVTKEDDQQRIDKLISCAL-EISRNRAQGLIAGGQVTISGRVINNNSYLTKTGDVYTIV 65 Query: 69 AEIEEEARFEPQ-DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY---- 123 +++ + P DI L +VYED D+I+I+K + VHPG G T+ NALL + Sbjct: 66 TAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAGL 125 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 + R GIVHRLDKDT+GLMV AKT A RL E L + +EY AVA G Sbjct: 126 QSVGSSSRPGIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPKR 185 Query: 183 GTVDEPISRHPTKRTHM-AVHPMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIRVHM 240 G + I + T M A + GKPA T Y + + + +R L TGRTHQIRVHM Sbjct: 186 GVIHTNIRVKRSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLHTGRTHQIRVHM 245 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 +HI H +VGD YG K ++ F RQALHA++L HP +G +E+ + Sbjct: 246 SHIGHSIVGDQKYG--KNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTSK 303 Query: 301 IPQDMVELIEVMR 313 D+ +LI + Sbjct: 304 PADDIQQLISALE 316 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 157/331 (47%), Gaps = 44/331 (13%) Query: 19 RLDQALAEMFPDYS--RSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 RLD +A PD S R R+ I + V +NGK KP + G+ + E E + Sbjct: 2 RLDAYVAANVPDASASRGRVAAAIKARMVTLNGKTASKPSRALKPGDVIEGELERERASE 61 Query: 77 FEPQD-IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY------------ 123 +P+ + LDIV+EDE ++++NK +V HP AG+ GT++NA+L + Sbjct: 62 AKPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQ 121 Query: 124 -----------------PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166 + R GIVHRLDK T+G+MVVAK A L E R Sbjct: 122 ALSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARV 181 Query: 167 ITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEH--FRVHT 222 + R+Y A+ G + G ++ PI R P R MAV G+ A ++Y ++ + Sbjct: 182 VRRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVTQGGGRFAASNYEVIATLANGNAS 241 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAF--------ISTLRKF 274 + RLETGRTHQIRVH HI HP++GD YGG A + + + Sbjct: 242 LVEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMSTI 301 Query: 275 DRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 DR LHA L HP SG +++ P+D Sbjct: 302 DRPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 162/311 (52%), Gaps = 27/311 (8%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + ++E+ +G+RLD ++E + +RS++K ++ ++VN K + + + I Sbjct: 32 SFIITEDDIGKRLDTFISEKL-NITRSQVKNYLTS--IIVNDA-EKKLSYSLKLNDNIII 87 Query: 68 NA-----EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 ++ E + A P++I LDI+YED+ +++INKP + VH GT++NALL+ Sbjct: 88 DSDNIFKEKTDTANPIPENIDLDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALLYK 147 Query: 123 ---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + + + RAGI+HRLDKDT+GLM++ K + + E + R I + Y A+ +G + Sbjct: 148 IKDFDFVGNKERAGIIHRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVGVL 207 Query: 180 TAGG-TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 ++ PI RH R M V GK A+TH ++++ F HT + + L+TGRTHQIRV Sbjct: 208 KDNYIEINLPIGRHHVYRKKMTVREDGKEALTHIKVLKRFNSHTLIEINLKTGRTHQIRV 267 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H ++ P+ GD +Y + K+ L A + HPI+ +++ Sbjct: 268 HSSYKGFPVAGDKIY--------------SKSFSKYSGLMLVAKKIEFMHPITKELLDFE 313 Query: 299 APIPQDMVELI 309 P + Sbjct: 314 IDYPDYFTNFL 324 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 108/297 (36%), Positives = 168/297 (56%), Gaps = 21/297 (7%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +R+D L++ + +RSRI+E I +LVNGK K KV G+++ I+ + +E Sbjct: 11 ERIDIYLSKKLDE-TRSRIQELIKSNNILVNGKK-TKASYKVNFGDEIFIDIPLLKEVDI 68 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRAGI 134 PQDI +DIVYED+ + IINK +VVHP G+ + T++NA+++ I R GI Sbjct: 69 IPQDIDIDIVYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGI 128 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHP 193 VHRLDK+T+GL+++AK +L E + +EI + Y A+ G + G ++ I R+P Sbjct: 129 VHRLDKNTSGLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNP 188 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 R MAV GK A+T++ +++ + L++ LETGRTHQIRVH++H P++GD VY Sbjct: 189 NDRKKMAVVDNGKLAITNFEVIDSNEKFSLLKVDLETGRTHQIRVHLSHFFFPILGDSVY 248 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 G + +DRQ LHA ML HPI+ +++ D + + Sbjct: 249 GRKDE---------------YDRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRALS 290 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 172/315 (54%), Gaps = 30/315 (9%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNG-KVCDKPKEKVLGGEQVAINAEIEEEAR 76 +R+D+ +++ + +R+ K I + V V+ K KP V G + + +E+E+ Sbjct: 10 ERIDKYISDN-SEITRNDAKALIEQEAVYVDDRKFVRKPNYMVREGMVITVLRLLEKESN 68 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI----ADVPRA 132 E D+PLDI YEDE ++I+NKP LVVHP G+ + T++NAL++++ + R Sbjct: 69 IEAVDMPLDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDANGLLRL 128 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISR 191 GIVHR+DKDT+GL+++AK L + L+ +I R Y A+ G + T ++ PI R Sbjct: 129 GIVHRIDKDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKINLPIQR 188 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPL 247 R M++H GK +VT+ +++ F + ++ ++ LETGRTHQIRVH+A+I HP+ Sbjct: 189 DTKNRKLMSIHKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIRVHLAYIKHPV 248 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 GD +YG Q LHA L HP+ +E ++ IP++ Sbjct: 249 YGDSIYGKSVDEFN---------------QRLHAYKLSFMHPVINKLIEVYSDIPKEF-- 291 Query: 308 LIEVMRADFEEHKDE 322 ++ D+E K++ Sbjct: 292 --DIAEYDYELLKND 304 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 160/313 (51%), Gaps = 20/313 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIK--EWILDQRVLVNGKVCDKPKEK 58 M +LT TV+ +Q G ++D L S + I+ +W+ D +L++G ++ Sbjct: 1 MDSPRRLTLTVAPDQSGWKVDALLRGTL-GLSGTVIRRVKWLEDG-ILLDGVRVT-VGDR 57 Query: 59 VLGGEQVAINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 V G+ +++ + E P PLDIVY+D+D++++NK + VHPG G+ T+ N Sbjct: 58 VRAGQILSVVVGDTEVSGAIVPAPGPLDIVYQDQDVLVLNKAPGVAVHPGPGHYSDTIGN 117 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 L+ YY + VHRLD+ T+GL++VA AQ L E L R Y AV G Sbjct: 118 FLMDYYRKQGILADFHPVHRLDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEG 177 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G +D PI R V P G+ AVTHYR + +RL LETGRTHQI Sbjct: 178 APNPPSGVIDAPIGRLEGSVLARTVRPDGQRAVTHYRTLRTVNDRALVRLELETGRTHQI 237 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMAH+ HPL GD +YG + R ALHA L HPI+G M Sbjct: 238 RVHMAHLGHPLTGDFLYGTEDQ-------------SLIPRPALHAAELSFTHPITGKTMA 284 Query: 297 WHAPIPQDMVELI 309 + AP+PQDM L+ Sbjct: 285 FTAPLPQDMAALV 297 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 332 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 110/318 (34%), Positives = 174/318 (54%), Gaps = 21/318 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A + + T E +GQRLD L+ + + SR++IK+ IL + + +P ++ G Sbjct: 8 ADSLSIPKTEMEKGVGQRLDLFLSSLL-NVSRNKIKKKILSGDLRLKNGAVLEPSHRIRG 66 Query: 62 GEQVAINAEIEEEARFEP--QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 E++ I + EE P ++I L+I+YEDE+I+I+NK R +VVHP G+ GT++N+L Sbjct: 67 IEEIEIRGGLTEEIPSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSL 126 Query: 120 LHYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 L +Y + + R GIVHRLDKDT+G+MV+AKT + L+ +R + + Y + Sbjct: 127 LFHYGESLPGSSLLRPGIVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCK 186 Query: 177 GHMT-AGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 + + I RH + R MAVH GK A T + ++ + L+ +GRTH Sbjct: 187 NRFPYLRYSFEANIHRHASDRKKMAVHRLKGKTAETRFTLLFASSQASFLKCEPVSGRTH 246 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH++H+ P++GDP+YG R LHA L++ HP SG + Sbjct: 247 QIRVHLSHLGFPIIGDPLYGKGVRKYPFP-------------LLLHAYALKIEHPRSGKK 293 Query: 295 MEWHAPIPQDMVELIEVM 312 +E+ AP+PQD E ++ Sbjct: 294 IEFMAPLPQDFKEALDFF 311 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 169/318 (53%), Gaps = 25/318 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPD----YSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + T VS + R+D+ L + F +SR++I+E I ++V VNG+V + Sbjct: 3 KFTLIVSSSA---RIDKILTDYFKTNTTPFSRTKIQELIKQEKVQVNGQVV-RANYVSQI 58 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ V I + + P IPL I+YED +++I+KP +LVVHP G+ + T++NALL Sbjct: 59 GDHVIIEFPSAKASELTPLAIPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLA 118 Query: 122 Y---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + + R GIVHR+D+ TTG +++AK +L + +Q +++ R Y A+ G Sbjct: 119 RGVQWSTASGEQRPGIVHRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQ 178 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + +D PI R P R M V K A+T+ ++E F +T + LE+GRTHQI Sbjct: 179 IIENRAKIDAPIGRDPNNRKKMVVTAKNSKKALTNIVVIERFNDYTYIECELESGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 R H+ +I HP+VGDP+YG + Q LHA LR HP++ + Sbjct: 239 RAHLKYINHPIVGDPLYGTVADKKESFG------------QYLHAYQLRFIHPVTKESLT 286 Query: 297 WHAPIPQDMVELIEVMRA 314 A +PQ+ + + ++RA Sbjct: 287 ITAALPQEFEQRLAILRA 304 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 114/318 (35%), Positives = 165/318 (51%), Gaps = 24/318 (7%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI-NAEIEEEARF 77 RLD LA+ SRSRI E I V+VNG V KP K+ G++V Sbjct: 37 RLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPSHKLDIGDRVICGEIVASPPTEV 96 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA---------- 127 P++IPLD+V+ED+ ++++NKP +VVHP AG+ G+++NALL + + Sbjct: 97 APENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMI 156 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 DVPR G+VHR+DK T+GL+V+AK AQ L R + R Y A+ +G G +D Sbjct: 157 DVPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRID 216 Query: 187 EPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAH 242 PI R P R MA+ G+ A++++ + + + +LETGRTHQIRVH Sbjct: 217 APIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQIRVHARE 276 Query: 243 ITHPLVGDPVYGGR--------PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 + HP+VGD YGG R ++ A + K R LHA L HP++G E Sbjct: 277 MGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVTGEE 336 Query: 295 MEWHAPIPQDMVELIEVM 312 + + P D V+ + Sbjct: 337 ISFAVEPPPDFVDAFTEL 354 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 115/321 (35%), Positives = 175/321 (54%), Gaps = 21/321 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLV---NGK--VCDKPKEKVLGGEQVAINAEIE 72 +R+D LA + P+ SRS + ++RV + NG + D+ KV G+Q+ I+ E Sbjct: 1 KRIDAVLAALEPEMSRSFCGNLVANKRVSIIQENGDNCLVDRKSFKVEPGQQLIISLPRE 60 Query: 73 E-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV-- 129 E + QD+PLDI++EDE +I+INK ++VVHP AGN DGTV+NAL +Y ++ Sbjct: 61 EGASEIIAQDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESIS 120 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 R GIVHRLDK TTG++VVAKT L R++ + Y A+ +G+ +D+PI Sbjct: 121 FRPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKHVVIDKPI 180 Query: 190 SRHPTKRTHMAVHPM-------GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 RHP R M V P G+ A+++ + + +++R+ETGRTHQIRVH+ Sbjct: 181 GRHPLHRQRMRVVPDPHQKNSTGRRALSYVDTLAFDGKLSLVQVRIETGRTHQIRVHLQD 240 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 P+ GD +YG K +S + R LHA L + HP++G M + A + Sbjct: 241 RHTPIYGDDIYGLADWNKK------LSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLA 294 Query: 303 QDMVELIEVMRADFEEHKDEV 323 DM + + D E+ ++ Sbjct: 295 DDMKRITTTIYPDSEKEIPDL 315 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 122/331 (36%), Positives = 169/331 (51%), Gaps = 24/331 (7%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + V E +G RLD+ L YSR+ ++ I RV VNG+V + + G+ V + Sbjct: 16 SFVVDERLIG-RLDKGLVLHNNAYSRAFYQQQIDLGRVRVNGRVQTRASYLLSQGDLVDL 74 Query: 68 NA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 E E + P++IPLD VYED I++INKPR++VVHP G+ GTV++ALLH Sbjct: 75 ELVEEETPSSLTPENIPLDKVYEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGER 134 Query: 127 ------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + R GIVHRLDKDT+GL++ KT A+ E +++ + Y A+ I + Sbjct: 135 LKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKAVYSELFSSKQMKKMYIAICI-NSP 193 Query: 181 AGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 A + I+RHP KR M V GK A+TH ++ + + L ETGRTHQ+ Sbjct: 194 AQKHIHTRIARHPVKRKEMTVLSKDTEGGKEAITHCHVLASNGRLSVVALYPETGRTHQL 253 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM H+ P++GDPVYG I+ D+Q LHA L HP S +E Sbjct: 254 RVHMKHLGTPILGDPVYG----------VPSINFRYGLDKQQLHAYSLVFTHPESAERVE 303 Query: 297 WHAPIPQDMVELIEV-MRADFEEHKDEVDWL 326 +P DM LIE R DW Sbjct: 304 LVTKLPDDMTSLIEKEFREGVSIVGGSCDWF 334 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 167/321 (52%), Gaps = 18/321 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M++ + + V E R+D AL+++F SR+ + VL++GK K +K+ Sbjct: 1 MSRETR-SLPVPEGLADMRVDVALSKLF-GLSRTVSADLATKGDVLIDGKPATK-SDKIT 57 Query: 61 GGEQVAINAEIEEEARFEPQDI--PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 G + + ++ +++ L+I+Y DED+I ++KP + HP G TV+ Sbjct: 58 DGAWLEVLLPEPQKPLVPTEELVDGLEILYADEDLIAVDKPVGVAAHPTVGWDGPTVVGG 117 Query: 119 LL---HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 L + R GIV RLD T+G+MVVA + + L + + R +++ Y A+ Sbjct: 118 LAAAGYRISTSGPPERNGIVQRLDVGTSGVMVVAASERGYSVLKRAFKERTVSKTYHALV 177 Query: 176 IGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 GHM GT++ I RHP+ AV GK AVTHY +E F + L + LETGRTH Sbjct: 178 QGHMDPLAGTIEANIGRHPSSGWKFAVTSDGKHAVTHYETLEAFVAASLLEVHLETGRTH 237 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM+ + HP GDP+YG P+ +S +RQ LHA L YHP G Sbjct: 238 QIRVHMSALHHPCCGDPMYGADPQ---------LSARLGLNRQWLHAVKLGFYHPADGRW 288 Query: 295 MEWHAPIPQDMVELIEVMRAD 315 +E +P P D+ +EV+RA+ Sbjct: 289 LEIESPYPPDLRHALEVLRAE 309 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 20/307 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEW-ILDQRVLVNGKVCDKPKEKVLGGEQ 64 QL V++ Q G + + L + S++ + + R+ VN + + G++ Sbjct: 3 QLRWIVTQQQDGMLVREFLKQQ--HISKTALTDIKFQGGRIEVNDVPVT-VRYVLKAGDE 59 Query: 65 VAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V ++ E++ A + IPL IVYED+ +I+INKP + P +P GT+ NALLH+Y Sbjct: 60 VCVSFPPEQKGANMVAEPIPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALLHHY 119 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 +V RLD+DT+GL++VAK L E ++ + R YEAV G++ Sbjct: 120 EQQQLQTTVHVVTRLDRDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLV 179 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 GT+D PI R V G+ AVTHY +++ T + ++LETGRTHQIRVH +H Sbjct: 180 GTIDAPIGRKGDSIIEREVRLDGQRAVTHYEVLQQKNEMTHVSIQLETGRTHQIRVHFSH 239 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HPLVGD +YGG DRQALH+ L +HP M +HAP+P Sbjct: 240 IGHPLVGDDLYGG--------------LREHIDRQALHSCELTFFHPFFEKTMTFHAPLP 285 Query: 303 QDMVELI 309 D+ L+ Sbjct: 286 DDIARLL 292 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 164/320 (51%), Gaps = 13/320 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++ + RLD+ +A + SR+++++ I D ++L+ + + Sbjct: 16 LEKKIFIKSGDENNRLDKFIASKL-NISRNQVQQLIKDSKILLFDTIIRDNNHITKVNDI 74 Query: 65 --VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 ++I + + IP+ +VYED DIIIINK + VHPGAG + T++NAL+ + Sbjct: 75 YNISIPIKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAH 134 Query: 123 YPP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 Y + R GI+HRLDKDT+GLMV+AK + L + L +++I +EY AV G Sbjct: 135 YGNSLSHVGKATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGL 194 Query: 179 M-TAGGTVDEPISRHPTKRTHMAVH---PMGKPAVTHYRIMEHFRV-HTRLRLRLETGRT 233 T+ I P + M V GK A+T Y+ + F + ++ R+ TGRT Sbjct: 195 PNPKSNTIKNYICVKPNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIHTGRT 254 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVHM++I + ++GD YG + + + RQALHA L HP S Sbjct: 255 HQIRVHMSYIGNSIIGDQKYG-KNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNT 313 Query: 294 EMEWHAPIPQDMVELIEVMR 313 +E+H+ IP D+ LI+ + Sbjct: 314 YIEFHSYIPNDIQMLIDELE 333 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 17/306 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T T+ G + L F +SR I+ +RV VNG + GE +++ Sbjct: 9 TYTLQPQDDGVKYQDILYRRF-HFSRKLIQHLKQGERVWVNGAFTFL-TTRGKAGETLSV 66 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + E +++PL+I+YED+ I INKP VVHP P GT+ NA++ Y+ Sbjct: 67 QLQPPEINSIPGENLPLEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKG 126 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVD 186 + +HR+D++T+G++V+ K A ++ I + Y + G M GT+ Sbjct: 127 EARPFRPIHRIDRNTSGVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIK 186 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI+ P + P G PAVT Y+++E ++ + L LETGRTHQIRVH H+ HP Sbjct: 187 APIALAPDSFIQRQISPEGSPAVTLYKVLERYQDASLLEFILETGRTHQIRVHCQHLGHP 246 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+GD +YGG L + +RQALH+++ HP++G AP+P+D+ Sbjct: 247 LLGDDLYGGN--------------LARINRQALHSSIYEFNHPLTGELTTIQAPLPEDLQ 292 Query: 307 ELIEVM 312 L+ + Sbjct: 293 RLLREL 298 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 160/296 (54%), Gaps = 19/296 (6%) Query: 20 LDQALAEMFPDYSRSRIKEW-ILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR-F 77 L L ++ S+ + + ++LVN K + + G++V + E + Sbjct: 41 LRTFLRDVI-GISKKSLADIKFKGGKILVNQKEVT-VRTTIFSGDRVEVYVPPEPKNESL 98 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHR 137 P+ IPLDI YED+ +++INKP+ + P +P T+ NA++ YY V+R Sbjct: 99 RPECIPLDIHYEDDHLLVINKPQGMPTIPSREHPSRTLANAVMGYYESHHIPFTFHAVNR 158 Query: 138 LDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKR 196 LD+DT+GL+VVAK A +L + + ++ R Y A+A G + GT+ PI R P+ Sbjct: 159 LDRDTSGLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTIHAPIKRRPSSI 218 Query: 197 THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR 256 V G+ A+THY+++ + ++ + + LETGRTHQIRVH AH+ HPL+GD +YGG Sbjct: 219 IERMVAADGQEAITHYKVINDNQAYSEVEINLETGRTHQIRVHFAHLGHPLLGDDLYGG- 277 Query: 257 PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 ++ RQALH + L HP +G + + AP+P+D++E+ + + Sbjct: 278 -------------SIELLARQALHCQRVELIHPFTGKHLHFSAPLPKDLIEVKDKL 320 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 21/314 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 ++ ++ GQR+D L +S I + V VN K KP+ K+ G++V I Sbjct: 13 IAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPV 71 Query: 71 IEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 E E L I+YED+ I+++NKP VH G+G G V+ L Sbjct: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRAL 130 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G + Sbjct: 131 RPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 Query: 183 -GTVDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 TV P+ ++ + V GKP+ T +++ E + T +R TGRTHQIRVH Sbjct: 188 VKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + HP+ D YG R + R LHA L+ HP +G M A Sbjct: 248 TQYAGHPIAFDDRYGDRE-----FDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEA 302 Query: 300 PIPQDMVELIEVMR 313 P+ + ++V+R Sbjct: 303 PMDNALKRCLQVLR 316 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 119/309 (38%), Positives = 162/309 (52%), Gaps = 30/309 (9%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD LA+ SRS+ WI +V V G V K K+ GGE + + +A Sbjct: 33 RLDSVLAD-LTGVSRSQAAGWIAGGQVEVGGVVVQKASLKLKGGETLRVQVPPPPDATVS 91 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-------PPIADVPR 131 P+ +PLD++YEDE +I +NKP +V HP G GT++NALL D R Sbjct: 92 PEAVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYR 151 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG--TVDEPI 189 GIVHRLDKDT+G++VVAKTV A RL + + R + Y A+A G A G +V+ P+ Sbjct: 152 PGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVSVNAPV 211 Query: 190 SRHPTKRTHMAVHPMG-KPAVTHYRIME-----HFRVHTRLRLRLETGRTHQIRVHMAHI 243 RHPT R M V +G + A T + + H R +R + TGRTHQIRVH+AH+ Sbjct: 212 GRHPTARQRMTVGGVGPREAQTLFTPLATHPDGHGRTLALVRAQPHTGRTHQIRVHLAHL 271 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GD VYG R ALHA L L HP++G + HAP+P Sbjct: 272 GSPILGDAVYGRASAV--------------MPRHALHAQFLTLPHPVTGETLHLHAPVPD 317 Query: 304 DMVELIEVM 312 D++ + Sbjct: 318 DLLRAWVAL 326 >UniRef50_A6GN92 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GN92_9BURK Length = 388 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 139/345 (40%), Positives = 188/345 (54%), Gaps = 29/345 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L A+V G RLD+ +AE+FP YSRSR++ W+ ++RVLVNG K +KV G +++ Sbjct: 18 LQASVPMELGGSRLDKVIAELFPQYSRSRLQGWLKEERVLVNGVAAAKGNQKVQGMDRIE 77 Query: 67 INAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ + + P+D+ LDIV + ++NK LVVHP G+ GT++N L H P Sbjct: 78 LSPGVLAHMQALIPEDMNLDIVARTNEYTVVNKQAGLVVHPAPGHWTGTLMNGLYHLDPE 137 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + VPRAGIVHRLD DTTGLMVVA+T Q +LV+ LQ R + R Y A+ G +++ TV Sbjct: 138 LIHVPRAGIVHRLDADTTGLMVVARTQETQVKLVQMLQARIVKRVYLAMVWGRISSPLTV 197 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVHMA 241 + P+ R P R MAV GKPAVTH+ + + T + RLETGRTHQIRVH Sbjct: 198 NNPLGRDPRNRLRMAVVDHGKPAVTHFTPVAFGELLEVPVTLMVCRLETGRTHQIRVHAQ 257 Query: 242 HITHPLVGDPVY---GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI-------- 290 H LV DPVY G S + KF+RQALHAT L P Sbjct: 258 HAGFALVADPVYKIKGAGSHSALRLSSIELPNGEKFERQALHATHLSFPDPAHFHVQGSD 317 Query: 291 -----------SGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVD 324 + E+ A P+D+ L E+ DF H D+V+ Sbjct: 318 EAAEDWDESLGNHEWPEYVAKAPEDLRLLGEMAGIDF--HSDDVE 360 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 92/307 (29%), Positives = 160/307 (52%), Gaps = 17/307 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + +S+ + G L L SR I++ + R+ +N + + K+ G+ + Sbjct: 18 SYRISDEEAGVTLYTFLKNRLK-MSRKFIRKMGREYRIRLNCRYVKFTEVKLNSGDLIEF 76 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 N +E+ ++P + LDI+YED +++INKP +++VHP T++N +L++ Sbjct: 77 NLNFKEKTYYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYHMRNQG 136 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 + +HRLD++TTGL+++AK A + Q I REY A G++ +++ Sbjct: 137 NYNLVRPIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFKKESIN 196 Query: 187 EPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 PI + V H +GK AVTH ++++ + + +R++LETGRTHQIRVH++H+ H Sbjct: 197 APIGKTRDSLIKRKVDHTLGKRAVTHIKVVKPGGLISLIRVKLETGRTHQIRVHLSHLGH 256 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +YGG R ALH+ + P E+ + AP+P DM Sbjct: 257 PLLGDTLYGGED--------------ILIKRPALHSYKVTCCLPFKHKEVTFKAPLPVDM 302 Query: 306 VELIEVM 312 +L + + Sbjct: 303 EKLKKQL 309 >UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S119_FINM2 Length = 307 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 174/311 (55%), Gaps = 18/311 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 + ++ RLD LA + SRS I+++I D++VLVN K K K+ +++ + E Sbjct: 7 IDDSNQNTRLDVFLANEV-ELSRSEIQKFIEDKKVLVNYKPQKK-NYKLNSNDKIKFDYE 64 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 +E+ Q LD+VYED+ + IINK +D++VHP T++N L++ + ++DV Sbjct: 65 -KEDKTIRAQKHDLDVVYEDDYLAIINKDKDVIVHPTETIYSDTLVNYLMYNFKNLSDVD 123 Query: 131 ---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 R GIVHRLDKDTTGL+++AK +L E ++ EI + Y + G + GT+ E Sbjct: 124 GDYRRGIVHRLDKDTTGLIIIAKDNDTHLKLKEIIKNHEIIKTYLCIVHGKIDESGTIKE 183 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 ++R+P R M V GK +++ Y +++ ++ ++++++TGRTHQIRVHM +I HP+ Sbjct: 184 YMTRNPKDRKKMMVSDEGKLSISQYERLDYNDDYSLVKVQIKTGRTHQIRVHMNYIHHPI 243 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 +GD +YG + FD Q LHA L+ HP + ++ + D + Sbjct: 244 LGDKLYGLKKEKI------------LFDSQVLHAYNLQFIHPQTHEKINVIGKLKPDFMT 291 Query: 308 LIEVMRADFEE 318 IE + D+ + Sbjct: 292 AIEKTKLDYTK 302 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 25/322 (7%) Query: 4 RVQLTAT-VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 R Q+ + E+ GQR+D L + +S + + V VN K K + K+ G Sbjct: 5 RTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAG 63 Query: 63 EQVAINAEIEEEARFEPQDI--------PLD--IVYEDEDIIIINKPRDLVVHPGAGNPD 112 + V + E EP L+ IVYED+ ++I+NKP VH G+G Sbjct: 64 DVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHF 123 Query: 113 GTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 G + AL P + +VHR+D+DT+G+++VAK A L + + + + Y Sbjct: 124 G-AIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYY 179 Query: 173 AVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETG 231 A+ +GH A V+ P+ ++ + V+P GKP+ T +RI+E F T ++ TG Sbjct: 180 ALVMGHWDAECKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQASPVTG 238 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH ++ HP+ D YG R A +R LHA ++ HP S Sbjct: 239 RTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQ-------FGIERLFLHAANIQFVHPAS 291 Query: 292 GIEMEWHAPIPQDMVELIEVMR 313 ++E HAP+ + + + MR Sbjct: 292 EKKLEIHAPLEAHLEQALTKMR 313 >UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8D7_COPPD Length = 315 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 110/316 (34%), Positives = 159/316 (50%), Gaps = 22/316 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 A RV +T V + RLD AL E+ SR+ I+ I V NG V KP +V Sbjct: 5 ADRV-ITGIVQQEA---RLDLALMEIIDDEGISRTWIQNNIKAGLVRCNGDVVTKPSLRV 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+ + I + +P D+ +VY DE + +I+KP +LVVHP T+ + L Sbjct: 61 KKGDLLEIRL-RSRISELQPADVEYSVVYYDEHLAVIDKPPNLVVHPAPSVKGLTLCHGL 119 Query: 120 LHYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 L +P + R GIVHRLDKDT+GLM+VA + L + + + ++R+Y Sbjct: 120 LKDFPQVKNVGSAERPGIVHRLDKDTSGLMLVALSEKGYAGLTKMISEKSVSRKYLVAVY 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G VD PI R P T MAV P GK A T +R ++ + L L TGRTHQI Sbjct: 180 GVANRPFEVDAPIGRDPRNPTRMAVVPHGKNAYTRFRPVQCLEKVSLLEAELFTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH++H ++GDPVYG + + R LH+ L L HPI+G + Sbjct: 240 RVHLSHAGFYVLGDPVYGN------------VESRLLAPRVFLHSYYLELEHPITGERLF 287 Query: 297 WHAPIPQDMVELIEVM 312 + +P+P+D+ E ++ Sbjct: 288 FVSPLPEDLDECWHIL 303 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 323 bits (828), Expect = 8e-87, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 157/311 (50%), Gaps = 17/311 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 +T V Q L + L D S + + +R+L+NG+ K E + G+ + Sbjct: 12 ITYEVEAEDDQQPLKETLKNRL-DLSSRLLTKLKKSKRILINGQYA-KYHELLSEGDWIK 69 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 I+ EE ++FEPQ+IP ++VYED D+I+INK +V HP +P T+ NA +Y Sbjct: 70 IDM-TEEASQFEPQEIPFNVVYEDIDVIVINKEPGIVSHPTKSHPKDTIANAAQNYLEKK 128 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGTV 185 R V+RLD DT+GL+V+AK + + ++ EIT++Y A G + G + Sbjct: 129 GVACRIRFVNRLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVVANEGEI 188 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D I R + V G+ ++T + ++E + T L + L TGRTHQIRVHM I H Sbjct: 189 DGAIYRSSDETIKRVVDDRGQQSLTKFTVLERYADATMLEVSLLTGRTHQIRVHMESIGH 248 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P++GD +YG RQALHA+ L P ++E A +P+D+ Sbjct: 249 PMLGDHLYGYVDT-------------ELIRRQALHASYLSFLQPRYKEKIEVRASLPKDL 295 Query: 306 VELIEVMRADF 316 EL ++ + Sbjct: 296 NELRNKLKDEL 306 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 149/308 (48%), Gaps = 18/308 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + ++ LG R+D L E D SRS+I I D +L N K K + + Sbjct: 3 SWIITSKTLGLRIDHFLNEHL-DLSRSKIASMIKDGTILCNDMP-TKANYKTKLNDCITA 60 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + + EP + +D+VYEDE ++++NKPR LVVHPG G T+L+ LL+Y Sbjct: 61 STYQIKTLDIEPVKMDIDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLYYLNSNC 120 Query: 128 DVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-V 185 D R G+VHR+D++T+GL+V+AK L E L + + R Y A+ G + + Sbjct: 121 DHYIRPGLVHRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLPQAHVLI 180 Query: 186 DEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 D PI + M V+ KPA TH+ +E + + + +LETGRTHQIRVH H Sbjct: 181 DAPIGPDKSNTKIMTVNQARSKPARTHFEKIETYINSSLICCKLETGRTHQIRVHALHAN 240 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 PL GDP YG K Q L A L HP M++ P+P+ Sbjct: 241 IPLHGDPQYGHPSDTDKTG-------------QYLCAARLEFVHPKYLKLMQFEIPLPRY 287 Query: 305 MVELIEVM 312 + I + Sbjct: 288 FQDKITEL 295 >UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D n=11 Tax=Chlamydiaceae RepID=C4PNG9_CHLTZ Length = 335 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 168/332 (50%), Gaps = 24/332 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + E G RLD+ L YSR+ ++ I RV VNG+V + + G+ V Sbjct: 12 FSFVIDEQLTG-RLDKGLVSYNGAYSRAFYQQQIELGRVRVNGRVYTRVSHPLSLGDVVE 70 Query: 67 INAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + EE + P+DIPLD VYED+ I++INKPRD+VVHP G+ GTV++ALLH Sbjct: 71 VELIEEEEPSSLIPEDIPLDKVYEDDMILVINKPRDMVVHPAPGHTQGTVVHALLHEIGE 130 Query: 126 I------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + R GIVHRLDKDT+GL++ KT A+ E +++ + Y A+ I Sbjct: 131 RLKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKALYSELFATKQVKKLYVAICINAP 190 Query: 180 TAGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 + + I+RHP KR M V GK A+TH ++ + + L ETGRTHQ Sbjct: 191 SQE-LIHTRIARHPLKRKEMTVLSTHAEGGKEAITHCHVLATNGRLSVVALYPETGRTHQ 249 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 +RVHM H+ P++GDPVYG I+ D+Q LHA L HP S + Sbjct: 250 LRVHMKHLGTPILGDPVYG----------IPSINFRYGLDKQQLHAYSLVFAHPESAERV 299 Query: 296 EWHAPIPQDMVELIEV-MRADFEEHKDEVDWL 326 + +P DM LIE R DW Sbjct: 300 KLVTKLPDDMTSLIEKEFREGVSILDGSCDWF 331 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 17/304 (5%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 + G+ L + L D+S + + + VNG+ K E + G+++ I E Sbjct: 17 ENDDAGKELKKILKNKL-DFSSRLLARVKRGKTIFVNGEYL-KYHETINAGDEIKIVME- 73 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR 131 +E F QD+P + VYED D+I++NK +V HP +PD T+ N Y + Sbjct: 74 DEPNHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSKGIDCK 133 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPIS 190 V+RLD DT+GL+++AK A L E +Q I ++Y A G + G ++ PI Sbjct: 134 VRFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRIEAPIY 193 Query: 191 RHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 R V G+ ++T ++++E ++ T + ++L TGRTHQIRVHM H+ HPL+GD Sbjct: 194 RTTMDSIKRVVDERGQESITEFKVLERYKNATMVEVKLLTGRTHQIRVHMEHLGHPLIGD 253 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 +YG DRQALHA LR + P +E A +P D++ L + Sbjct: 254 TLYGKEDA-------------ELIDRQALHAEYLRFWQPRFKRAIEVKADLPADLLSLRD 300 Query: 311 VMRA 314 ++ Sbjct: 301 KLKE 304 >UniRef50_Q6KHW4 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q6KHW4_MYCMO Length = 298 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 161/295 (54%), Gaps = 23/295 (7%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 R+D+ LA DYSR+ I++ I + +V VN + K K+ +Q+ I ++ +E Sbjct: 13 RIDKFLANS-TDYSRNDIQQLIDEHQVYVNDILVRKASFKIKENDQIEIKKQLIKETNAI 71 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP----PIADVPRAGI 134 Q+I LDIV+E+ED +IINK +VVHP GN T++NALL ++ I R GI Sbjct: 72 AQNINLDIVFENEDFLIINKRSGMVVHPAPGNMQDTLVNALLFHFKNNLSNINGEIRPGI 131 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISRHP 193 VHR+DKDT+GL++VAKT A L++ +I R+Y+A+ +G M T ++ PI R+ Sbjct: 132 VHRIDKDTSGLLLVAKTNEAHNYFALLLKKHQIERKYQAIIVGKMDHTITNINLPIGRNT 191 Query: 194 TKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 + R M V K A T ++ H+ ++ L+TGRTHQIRVH+AHI P+ GD + Sbjct: 192 SSRLKMEVTAHNSKEAFTKITSLKASETHSLIQCELKTGRTHQIRVHLAHINKPIYGDNI 251 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 YG + Q LHA L + + ++ P+P++M E Sbjct: 252 YGKKVDDFN---------------QRLHAYELSFTY-KDNKQYSFNVPLPKEMQE 290 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 113/309 (36%), Positives = 165/309 (53%), Gaps = 32/309 (10%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 A V G+RLD+ L + P++SR+ ++ + V +V + +KV+ G+Q+ + Sbjct: 43 AVVEAAAHGERLDKWLVRIAPEFSRAHLQGLVEGGHVRCGEQVLRQSHKKVMAGQQIEVA 102 Query: 69 A-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + F + + L +V+ED +++I+KP LVVHP AG+ GT+LN LL ++ A Sbjct: 103 LWPTAQSTAFRAEAMTLAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAA 162 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVD 186 +PRAGIVHRLDKDT+GLM+VAK++ A T LV ++ R++ REY A+ G + G +D Sbjct: 163 HLPRAGIVHRLDKDTSGLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVID 222 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR-----------------VHTRLRLRLE 229 P+ R P R MA+ GKPA T R + + + +L Sbjct: 223 APLGRDPVSRVRMAIVASGKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLH 282 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH+A HPL+ D +YGG P RQALHA L L HP Sbjct: 283 TGRTHQIRVHLASRGHPLLADAMYGGAPA-------------FGLQRQALHAARLHLLHP 329 Query: 290 ISGIEMEWH 298 I G + + Sbjct: 330 IDGRPLAFE 338 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 98/322 (30%), Positives = 157/322 (48%), Gaps = 17/322 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + V + G R+D+ L+ F +YS R++ + VNG D P ++V Sbjct: 1 MKTAFETDLIVEDYLDGARIDRFLSRHFRNYSTHRLQRIVQAGFAKVNGIPAD-PLQRVF 59 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+Q+ I + ++P+ +PL+++YED +II+NKP ++ HP GTV NAL Sbjct: 60 RGQQINIRLPEPPDKTYDPEPLPLEVLYEDAWLIIVNKPPGMIAHPAGNILSGTVANALQ 119 Query: 121 HYYPPIADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +Y V R GIVHRLD+ T+G+++VAK L Q+ +++ Y A+ Sbjct: 120 YYLDQQTGVRSLLRPGIVHRLDQFTSGILIVAKEHLGHRSLSIQFQQNRVSKSYLAIVRD 179 Query: 178 HMTAG-GTVDEPISRHPTK-RTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGR 232 ++ I HPT+ M HP K A T + ++E H+ +R +TGR Sbjct: 180 QPKQDLFENNDAIGEHPTQAGVCMTTHPEALRAKAAFTRFEVVERLPGHSLIRAFPKTGR 239 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 HQIRVH+A + P++ D YG R + RQALHA + HP++ Sbjct: 240 LHQIRVHLADLGFPIIADDFYGNDAR--------LLDDRELISRQALHAEQIEFSHPVTS 291 Query: 293 IEMEWHAPIPQDMVELIEVMRA 314 + M A +P D ++ +R+ Sbjct: 292 LRMNISAGVPADFQLALQRIRS 313 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 155/301 (51%), Gaps = 10/301 (3%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 R+D L + +R+ I++ I V VN + K V + + I E + Sbjct: 38 RIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKK-NYIVKINDVIEIFLP-EGKKNII 95 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR--AGIVH 136 P+++ ++I YEDE +IIINK LVVHPG GN T++N L Y+ ++ +VH Sbjct: 96 PENLKINIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKIPILVH 155 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTK 195 R+DK T+GL++VAK ++ + I R+Y + G++ GT+ I R Sbjct: 156 RIDKGTSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWGYIKNNKGTIICNIGRSLKN 215 Query: 196 RTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 R +M V P G K ++THY+++E F+ T L+ LETGRTHQIRVH+ +I HP++ D Sbjct: 216 RIYMNVFPNGIYGKFSITHYKVLERFKYVTLLKCTLETGRTHQIRVHLKYIGHPILNDKD 275 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YGG + + QALHA + HPI + + PIP + LI+ + Sbjct: 276 YGGNHTFKEKKN--IKKLFINMKYQALHAYYIEYIHPIYRKKNYFICPIPDRIKFLIKNL 333 Query: 313 R 313 R Sbjct: 334 R 334 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 152/323 (47%), Gaps = 26/323 (8%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q + V++ G RLD LA SRS + I +VLVNG K V G+ + Sbjct: 4 QFSLIVTQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNGLARSKRS-IVAPGDTI 62 Query: 66 AIN-AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + IPLD+ +ED ++ I+K L VHP G+ GT++NAL++ Y Sbjct: 63 VYEEIPLATHIPLRGEPIPLDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNALIYAYG 122 Query: 125 PIA-----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + R GIVHRLD DT+GLM+ AK L + ++ ++ R Y + G++ Sbjct: 123 RDSLAHVQGDDRPGIVHRLDMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTLVHGNI 182 Query: 180 TAG-GTVDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFR------VHTRLRLRLET 230 G +DEPI R R M + P + A+T + ++E F +T L RL T Sbjct: 183 AFDTGQIDEPIGRVGDDRLRMKISYRPTARNALTTFTVLERFEAGRADNGYTLLECRLYT 242 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVHM I H VGDP+Y + RQ LH+ L HP+ Sbjct: 243 GRTHQIRVHMEFIGHCCVGDPLY----------RWGNEQVNLELSRQFLHSYSLSFNHPM 292 Query: 291 SGIEMEWHAPIPQDMVELIEVMR 313 +G ++ +P D+ + + Sbjct: 293 TGDDIALVDGLPPDLFGALRSLE 315 >UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 Tax=Leptospira RepID=Q04XF3_LEPBL Length = 312 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 111/316 (35%), Positives = 165/316 (52%), Gaps = 23/316 (7%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVL-VNGKVCDKPKEKVLG 61 ++L A V E G RLD+ L F D SR+ I++WI V + K+CDK KV Sbjct: 2 NLELKAEVLEEFSGNRLDRFLKFSFGDEMSRATIQKWIECGYVRNQDRKICDKSSWKVKT 61 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 GEQ ++ EP + L +V E ED +II+KP + H G G+ +++N LLH Sbjct: 62 GEQYFLSIPPRPPLSLEPIPMTLPVVLEREDYLIIHKPPGIASHSGPGDRSPSLVNGLLH 121 Query: 122 YYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 ++ + R GIVHRLDK T GLM++AK A +L E ++REI ++Y A GH Sbjct: 122 HFKELSKVGGEARPGIVHRLDKPTEGLMLIAKNDRAHGKLSELFRKREIEKKYYAWIQGH 181 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEH-----FRVHTRLRLRLETGR 232 + A GT+D PI+RHP +R M V P G+ +VTHY+++++ R + + + LETGR Sbjct: 182 LPAETGTIDLPIARHPIERLKMTVSPKGRKSVTHYKVLKYVNSRSGRKFSFVEVGLETGR 241 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIR+H P+VGD +Y S + Q L + L+ P +G Sbjct: 242 THQIRIHFQSQRCPVVGDLLY-----------SRTGSQFESYGLQLL-SYYLKFKDPFTG 289 Query: 293 IEMEWHAPIPQDMVEL 308 +E + + + Sbjct: 290 EMIEATLALSERFLRF 305 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 156/308 (50%), Gaps = 19/308 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV G +D L E + + + + +++ ++VNG+ E + G+++ ++ Sbjct: 12 ITVPTKWSGMSIDSLLKEEW-GIPKKLLHKLRMEKGIIVNGER-KVWSEMLQEGDKLQVH 69 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 +EE +P+ L++++ED+ ++I+NKP + HP GT+ N + + Sbjct: 70 MFAQEEYGVQPEYGDLEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAFHLQMQGV 129 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDE 187 + +HRLDKDTTG +V AK A + L R I R Y A+ G + G +DE Sbjct: 130 ETKVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRKKQGIIDE 189 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQIRVHMAHITH 245 I R T V G AVTHY+I ++F+ T + L+LETGRTHQIRVHM+H H Sbjct: 190 AIGRDRHHATRRRVSQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQIRVHMSHSGH 249 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +YGG+ QALHA + HPI+ E+ AP+P ++ Sbjct: 250 PLIGDVLYGGQATY--------------MPYQALHAMRIHFLHPITKEEITVEAPLPNNL 295 Query: 306 VELIEVMR 313 +IE + Sbjct: 296 NNIIESFK 303 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 26/317 (8%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M ++ + +++E +RLD+ L S I + + V VNGK KP ++ Sbjct: 1 MENKI-VELSINEENSYRRLDKFLRNELKAVPLSEIYKLLRTGCVQVNGKTVRKPYTELY 59 Query: 61 GGEQVAINAEIE---EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G++V I A++ ++ + LDI+YED++++I+NK + +HP T++ Sbjct: 60 VGDKVTIKADLAVYRQKKDLPSIPLKLDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQ 119 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 L ++ + +VHRLD+DT+G++V+AK V L + R + +EY + G Sbjct: 120 GL--HFYGAKKGFKPHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSG 177 Query: 178 HMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + G +D+P+ G A+T Y+++E+FR + LR+ L TGRTHQIR Sbjct: 178 KIFGDGFIDKPL--------------DGSEALTEYKVLENFRDTSLLRVILHTGRTHQIR 223 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 H A I +P+VGD +YG + RQ LH + +P + Sbjct: 224 KHFALIGNPVVGDILYGDKKVN------ELFKKKHNLRRQFLHCIRISFTNPSEPGVISI 277 Query: 298 HAPIPQDMVELIEVMRA 314 AP+P D+ +I+ ++ Sbjct: 278 KAPLPDDLERVIKGLKK 294 >UniRef50_Q8D220 Pseudouridine synthase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D220_WIGBR Length = 314 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 120/300 (40%), Positives = 193/300 (64%), Gaps = 4/300 (1%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 +Q G+RLD+++AE+FP+YSR++IK++I++ +V VN PK+ + GGE + I ++ Sbjct: 14 SQNGKRLDKSIAEIFPEYSRNKIKKFIINNQVKVNDICIINPKKNIKGGECIKIKIS-KK 72 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAG 133 + ++YED+DI++INK +D++VHPG + T+L+ +L YP ++ RAG Sbjct: 73 NNLISKKRKTYKLIYEDDDILVINKYKDVIVHPGCDKHENTLLHDILFNYPDSKNLYRAG 132 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 IVHRLDKDTTGLM++A+ +Q +L++ L+ R I REY AV +G + GTV PI R+ Sbjct: 133 IVHRLDKDTTGLMLIARNSFSQKKLIKLLKLRLINREYRAVLLGKIICDGTVSAPIIRNS 192 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 RT M VH GK ++THY+I+++F + +++ LE+GRTHQIR+HM++I HP++GD VY Sbjct: 193 KNRTRMKVHISGKESITHYKIIKNFNDFSYVKINLESGRTHQIRLHMSYINHPVLGDFVY 252 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 G + + ++ R ALHA ++ HPI+ M +P DM L++ ++ Sbjct: 253 GNK---KNKYIKTLYKSIFNISRHALHARKIKFIHPINNCLMVHKIDLPDDMKILLKNLK 309 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 98/270 (36%), Positives = 147/270 (54%), Gaps = 17/270 (6%) Query: 43 QRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRD 101 + +NG+ K + G+ + + E+ + + +PLDI+YEDE +++INK Sbjct: 25 GDLQINGEHVT-VKYVLKEGDLLIVKFPEEQVSETLLAEPVPLDILYEDEHVLVINKQPY 83 Query: 102 LVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVES 161 + P +P G++ N ++ +Y +V RLD+DT+G+M+VAK A + L + Sbjct: 84 VSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLDRDTSGIMLVAKHRFAHSILSSA 143 Query: 162 LQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV 220 + + R Y AV G M GTVD PI RHP V P G+ AVTH+ + Sbjct: 144 QKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVTPDGQKAVTHFYVTCANDD 203 Query: 221 HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALH 280 T + L+LETGRTHQIRVHM+++ HPL GD +YGG T ++ RQALH Sbjct: 204 MTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGG--------------TRQEIGRQALH 249 Query: 281 ATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 + L HP++ M +HAP+PQDM +LI+ Sbjct: 250 SEHLSFIHPLTQENMRFHAPLPQDMSKLIK 279 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 159/299 (53%), Gaps = 21/299 (7%) Query: 15 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 + G L Q L +S Q + V+G + ++ G+ V + EE+ Sbjct: 2 EDGIVLGQFLKA--KGFSHRLAVRIKAAQGLAVDG-IAAYAGYRLKTGQTVEVTLPEEED 58 Query: 75 A-RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAG 133 + P +PL IVYEDEDI++INK + +HP G+ D T+ NA+ Y+ + Sbjct: 59 SGNIVPVKLPLSIVYEDEDILVINKDAGVPIHPSQGHYDNTLANAVSWYFHEKGEAFTYR 118 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 +++RLD+DTTGL+V+A+ + + L E + R I REY A+ +GH GTVD PI+R Sbjct: 119 VINRLDRDTTGLLVLARHMLSACILSEQMTGRRIRREYRAIVLGHTPEEGTVDSPIARAE 178 Query: 194 TKRTHMAV-HPMGKPAVTHYRIM--EHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 V H G+ AVTH+R + + + + L LETGRTHQIRVHM I HPL GD Sbjct: 179 GSTIERRVDHETGERAVTHFRTLLYNEEKDLSLVSLSLETGRTHQIRVHMRSIGHPLPGD 238 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 +Y R DRQ LH+ +LR HPI+G EME+ A +P+DM +L+ Sbjct: 239 FLY--------------CPDYRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDMKQLL 283 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q+ V +Q G+ L L D S +K+ + +L NG + V G++V Sbjct: 7 QVVLCVEASQNGKFLRDFLKH--KDISDRALKKLRNEGEILCNGAKVT-WRTIVNTGDKV 63 Query: 66 AINAEIEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + I ++ P+ + L I+ EDEDI ++NK + VHP P GT+ N L++++ Sbjct: 64 VLIYPIPPRNQYLPPEPLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLVYHWL 123 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGG 183 P V+R+D++T+GL++VAK + +L +R+++ R Y A+ G + G Sbjct: 124 ENNPAPTFHAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNG 183 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D P+ + K T + G+ A+T + ++++ T +RL ETGRTHQIRVH++H+ Sbjct: 184 YIDLPLEKCEGKTTKRQISSTGQQALTRFEVLQYITDCTLIRLMPETGRTHQIRVHLSHL 243 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +YGG ++ + R LHA + HP +G M + P+ + Sbjct: 244 GHPLVGDTLYGG--------------SIAQIGRHCLHADKISFLHPRTGHPMSFQIPLAE 289 Query: 304 DMVELIEVM 312 DM+++I M Sbjct: 290 DMLQVITEM 298 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 114/320 (35%), Positives = 158/320 (49%), Gaps = 22/320 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKVLGGEQV 65 L + + G+ L +SR + + + NG E++ G+ + Sbjct: 9 LNYQIEKEWEGESAAAFLRA--KGFSRHILTHLKQTEGGICRNGSRIWL-SERLHFGDVL 65 Query: 66 AINAEIEEEA-RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E + P + LDIVYEDED+++I+KP D+ VHP N D T+ N L +YY Sbjct: 66 TVTFLEERSSENIVPVPMKLDIVYEDEDLLVIDKPADMPVHPSIHNFDNTLANGLAYYYE 125 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 + + RLD+DTTGL++VAK + + L E +RREI REY A+ G A GT Sbjct: 126 SRGEAFVYRCITRLDRDTTGLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGKTEAEGT 185 Query: 185 VDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 VD PI+R V G+ AVTHYR +E+ ++ +RL+LETGRTHQIRVHM +I Sbjct: 186 VDAPIARVEGSVLERCVDFQRGERAVTHYRTLEYRDGYSLVRLKLETGRTHQIRVHMKYI 245 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL GD +Y R D QALH+ L HPI+G ME+ + P Sbjct: 246 GHPLTGDFLY--------------NPDYRLMDHQALHSHYLAFRHPITGERMEFTSQPP- 290 Query: 304 DMVELIEVMRADFEEHKDEV 323 L E D EE Sbjct: 291 -WQGLWEGREEDGEETLKSC 309 >UniRef50_B6BNM7 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BNM7_9PROT Length = 325 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 22/315 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +RLD LA +RS+I I + V V+ K+ +P K+ G+ + + +E+ Sbjct: 13 ERLDIFLASEI-GQTRSQIASLIKHKCVFVDEKLVTRPGVKLKSGQNIKVEFPEAKESPA 71 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH---YYPPIADVPRAGI 134 D ++I+YED+D+++INKP + VHP + T+++ L H I+ R GI Sbjct: 72 LDIDFNVEILYEDDDVLVINKPSGVTVHPAPSVKEATLVDWLKHKGIRLSNISGEERHGI 131 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHP 193 VHRLDK T+G MVVAK A L E LQ + + R Y AV + T+++ I R Sbjct: 132 VHRLDKGTSGTMVVAKNNEAHEFLSEQLQDKSMGRYYLAVLNPPLKDEITTIEQNIGRSA 191 Query: 194 TKRTHMAVHPMG--KPAVTHYRI--MEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 R M G K A T +++ + + + +L TGRTHQIRVH+ I ++G Sbjct: 192 HNRLKMTCTDAGKSKYAKTMFKVLSLSNDEKQQFVACKLFTGRTHQIRVHLESINRHIIG 251 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D +Y P+ K +R LHA M+ HP S ++ + AP+ + M + + Sbjct: 252 DHIYALSPKAEKS------------ERILLHAYMIYFVHPTSKEKLTFVAPLDETMKDYL 299 Query: 310 EVMRADFEEHKDEVD 324 + + D E+ + +D Sbjct: 300 DK-KFDTEQINEVMD 313 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 107/311 (34%), Positives = 160/311 (51%), Gaps = 19/311 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKVLGGE 63 ++L + G+ L L E SR + + + ++ VNGK + + + G+ Sbjct: 4 IRLQWVIDNAATGKLLRDYLREE-KQISRKALADIKFNGGQITVNGK-EENVRYTLRLGD 61 Query: 64 QVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 + + E+ +R +P I L I++EDE +IIINKP L P + ++ A+L Y Sbjct: 62 VIEVIFPKEKVSRSIKPYKIKLHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGAILAY 121 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 Y V RLD+DT+GL++VAK V+ + EI R Y A+ G ++ Sbjct: 122 YIENGIPSTFHAVSRLDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILSDD 181 Query: 183 -GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 T+D PISR T V+ GK A+THY +++ + T L+L LETGRTHQIRVHM+ Sbjct: 182 YNTIDLPISRKTTSIIEREVNEFGKSAITHYEVLKRYSGATLLQLTLETGRTHQIRVHMS 241 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 I HPL+GD +YGG +R DRQALH+ L +HPI+ E +H PI Sbjct: 242 AIGHPLLGDTLYGGD--------------VRYIDRQALHSHQLSFFHPINKREYTFHCPI 287 Query: 302 PQDMVELIEVM 312 P D+ + + Sbjct: 288 PDDIEDAMSKF 298 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 20/310 (6%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR-VLVNGKVCDKPKEKVLG 61 R L + + G + + L S++ + + + VNG+ + ++ Sbjct: 2 NRFTLKWDIGPAEEGTLVREFLKT--KGISKAALTDIKFHGGAIEVNGQHAS-VRHQLRA 58 Query: 62 GEQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE++ + +EE + +DIPL I+YED+ ++IINK ++ P +P G+V NALL Sbjct: 59 GEELRVFFPVEERSEGMMAEDIPLCIIYEDDAVLIINKEANMSTIPSREHPAGSVANALL 118 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-M 179 +Y IV RLD+DT+GLM++AK L + Q++ + R YEA+ G + Sbjct: 119 SHYDKQHLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIV 178 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 G +D PI R V G+ AVTH+++++ T + L LETGRTHQIRVH Sbjct: 179 EREGMIDAPIGRKSDSIIERTVCEDGQRAVTHFKVIDSTYHKTHVALELETGRTHQIRVH 238 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 MAH+ HPL+GD +YGGR + RQALH+ L YHPI EM + Sbjct: 239 MAHVGHPLLGDSLYGGRRD--------------EMKRQALHSKSLTFYHPILEKEMSFTI 284 Query: 300 PIPQDMVELI 309 +P DM E++ Sbjct: 285 KLPSDMQEVL 294 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 29/323 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V++ +RLD+ L D S I + I +V VNGK P + G+ V Sbjct: 1 MRVEVTKENFYRRLDKFLRNQLKDVPLSVIYKLIRKGKVYVNGKRVKDPSFDLEEGDVVE 60 Query: 67 IN-------AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 + E+ P + LD++YE + +++NKP ++ +HPG G T++ L Sbjct: 61 FRYVNLENLPKRSEKKDLTPVPMKLDVLYEGKHYLVLNKPPNIAIHPGKGVHVATLIEGL 120 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 LHY P +VHRLDKDT+GL+VVAK A L E + R I +EY + G Sbjct: 121 LHYGQEKGFSP--FLVHRLDKDTSGLLVVAKDREAARILTELFKDRNIEKEYVTLVRGTP 178 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 + P+ G+ A++ ++ R + LR+++ TGR HQIR H Sbjct: 179 ENNMKITIPL--------------DGQEAISEIVSVKSLRDVSLLRVKIHTGRKHQIRRH 224 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++ I P+VGD YG R + R LH+ ++ P + E ++ A Sbjct: 225 LSQIGFPVVGDDTYGDRHFNRE------FRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRA 278 Query: 300 PIPQDMVELIEVMRADFEEHKDE 322 P+P D++ ++ + +E +E Sbjct: 279 PLPDDLLSVLNFLEERSDEWLEE 301 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 161/314 (51%), Gaps = 21/314 (6%) Query: 1 MAQRV---QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKE 57 M + +L + + G +++ L SR+ ++ ++ +L+N ++ K Sbjct: 1 MENKCIIEKLQLIIPQTMDGWTVERVLRREV-GVSRTLLRRAKRNRVILLN-QLPVKTNV 58 Query: 58 KVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 V GE + + +E + P+ + L+I+YED ++ +NKP ++VHP GT+ N Sbjct: 59 TVKTGEVLELWM-GSQETQVVPERMELNILYEDAHLLAVNKPPGMLVHPLTNETSGTLAN 117 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +L+++ + R VHRLD++T+G++++A+ Q +L +++ + R Y A+ G Sbjct: 118 GVLYHWLQQGTIDRFRPVHRLDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKG 177 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + G + PI+ + P GK A++HY+++ F + +R+ LETGRTHQ+ Sbjct: 178 KVQPEQGVIQAPIALEEGSFIKRMISPAGKEAISHYQVLRTFNQASLVRVELETGRTHQV 237 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMAH+ HPL+GD +YGG RQALH L HP+ G ++ Sbjct: 238 RVHMAHMGHPLLGDSLYGGDTSN--------------IKRQALHCAYLAFNHPVQGSRIK 283 Query: 297 WHAPIPQDMVELIE 310 + D+ +L+E Sbjct: 284 ISCSVAGDIRQLME 297 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 26/306 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE---IEEE 74 +R+D+ L E DYSR+ IK+ + VLVN + K + + V I E I+ + Sbjct: 11 KRIDKFLVE-VTDYSRTSIKKMLEQNLVLVNDNIITKQSYLLQKNDSVEIKNEQCVIDSQ 69 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGI 134 P PL+IV+ED+D+++INKP ++VHP + T+ NAL HY I Sbjct: 70 KELLPFACPLEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHYLKT----DDFYI 125 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT---AGGTVDEPISR 191 HRLDK+T+GL+V+ K A L + ++ + + Y A+ ++EPI Sbjct: 126 THRLDKNTSGLIVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEPIGH 185 Query: 192 HPTKRTHMAVHPMG--KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 + M K A++ +++E ++ + + + TGRTHQIRVHM HI HP+ Sbjct: 186 SYQDKLRMKTGDAKNVKEAISIVKVIEQYQNTALVEVSIITGRTHQIRVHMRHINHPIYN 245 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 DP+YG Q LH+ + HP + +E+ +P + + LI Sbjct: 246 DPLYGISKHTTPYE-------------QYLHSFYISFIHPSTNEIVEFKTLMPNEFINLI 292 Query: 310 EVMRAD 315 + + + Sbjct: 293 KEWKTN 298 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 159/326 (48%), Gaps = 40/326 (12%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + LT + RLD L+E PDYSR I+ I +V VNGK KP + Sbjct: 1 MSNKETLTF----SGTSARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGK-ERKPAWPLA 55 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG------- 113 G+ V I E +D+ I++ED+++ +INKP ++VHP + + Sbjct: 56 EGDNVEIEWPSVENKTGL-KDL---IIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFI 111 Query: 114 ---TVLNALLHYYPP--IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 T+++ +L P + RAG+VHRLDKDT+G+M++AK Q +VE RE+ Sbjct: 112 GEETLVSLILANPPKNFEKGITRAGLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMH 171 Query: 169 REYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLR 227 + YEA+ G + G ++ PI R + +G+ AVT Y +++ + ++L Sbjct: 172 KTYEAIVCGVVPDDKGIINVPIGRVTGGKIK--ASELGREAVTEYSVLQRKETVSLMKLH 229 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 TGRT+Q+RVHM+ + +P++GD +Y G P R LH+ Sbjct: 230 PVTGRTNQLRVHMSWLGYPVLGDWLYKGATAP----------------RLMLHSKSAEFE 273 Query: 288 HPISGIEMEWHAPIPQDMVELIEVMR 313 HP + +++ P+D + + + Sbjct: 274 HPFTSKPVKFTVAPPKDFKDSWKNAK 299 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 158/301 (52%), Gaps = 17/301 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 +S+ G ++ L + YS +I++ + +L+NGK K K+ + ++I Sbjct: 31 ISQEHEGFTVENYLKNIL-QYSGRKIQKLTRRKGILLNGKTVYLQK-KLNAEDTLSILDL 88 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP 130 + +P+ ++++YED+ ++++NKP +VHP GT+ N L +Y V Sbjct: 89 EDTNYGVQPEKGAIEVLYEDDFLLVLNKPAHQLVHPTGQTTRGTMANYLAYYLKQRNVVS 148 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPI 189 VHRLD++T+G ++ AK +Q L + L+ R + R Y A+ G + GT+D PI Sbjct: 149 AIRPVHRLDRETSGCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPPSGTIDAPI 208 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 HP+ A++ G+ ++THY+ + F + L+L L+TGRTHQIR+H+AH+ +P++G Sbjct: 209 GPHPSLANRRAINEHGEQSITHYQTLRSFPEISLLKLNLDTGRTHQIRLHLAHLGYPIIG 268 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D +YG R +RQALHA + H E+ HAP+P D + I Sbjct: 269 DRMYGVRSPW--------------INRQALHAYDVSFRHLKENHEIAVHAPLPTDFAQAI 314 Query: 310 E 310 Sbjct: 315 N 315 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 157/320 (49%), Gaps = 23/320 (7%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T V E G RLD+ L FP S I+ + +V VN + ++ G+ V + Sbjct: 12 TVQVDEEYAGSRLDKFLKSQFPSVPFSLIQRLMRTGQVRVNKGRA-RGDRRLAFGDWVRL 70 Query: 68 NA-----------EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 +E+ + D+ ++ D I+++NKP + VH G+G+ G V+ Sbjct: 71 PPVTPPTAEELEHPNKEKILHQSADVEARTLHRDGWILVLNKPAGIPVHGGSGHQWG-VV 129 Query: 117 NALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 +A+ + +A + HRLDK+T+GL++ A L E+++ ++T+ Y + Sbjct: 130 DAVRASLEKLGIEAQAELCHRLDKETSGLLLFGLRPRAVRLLTEAMRENQVTKTYLTLVQ 189 Query: 177 GHMTA-GGTVDEPISR-HPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 G A G +++P+S+ + M V G+ AVTHYR++ + V + L ++LETGRT Sbjct: 190 GVPAARQGVINQPLSKGNVRGGERMVVVEQGGQRAVTHYRVLRSYGVASLLEVQLETGRT 249 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVHM + HP+ GD YG + R R LHA+ L HP + Sbjct: 250 HQIRVHMQWLGHPVAGDGKYGDKAFNKWMRE-------RGLKRLFLHASELAFRHPENEQ 302 Query: 294 EMEWHAPIPQDMVELIEVMR 313 ++ + AP+ ++ ++E ++ Sbjct: 303 KLAYQAPLDDELTRVLEGLK 322 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 97/328 (29%), Positives = 157/328 (47%), Gaps = 27/328 (8%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 + V+ RLD L+ +R+ I ++V +N + E+V G Sbjct: 2 SETHIQLLVTPQHDRMRLDAFLSTCSELGARNACAHLIEQRKVEINDTLALSKSERVRMG 61 Query: 63 EQVAINAEIEEEAR---FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 +++ + +I+ + IPLDI YED+ +++I+K LV HP G+ D T+ NAL Sbjct: 62 DRICVAQQIDNTSSSHIMPNASIPLDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNAL 121 Query: 120 LHYYPP-----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 174 + + + R GIVHRLD DTTGLMV AK Q L + ++ R R Y + Sbjct: 122 VAHCGYEHLGLLQGDDRPGIVHRLDMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVL 181 Query: 175 AIGHM-TAGGTVDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFR------VHTRLR 225 G++ GT+ I+R R M + P + A+T ++ +E F ++ L Sbjct: 182 VQGYVTPDEGTITTGIARSKKNRLKMCISKDPASREAITTFKTLERFEAGSKDDGYSLLE 241 Query: 226 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLR 285 L TGRTHQIRVHM ++ H +VGDP+YG + RQ LH+ + Sbjct: 242 CHLYTGRTHQIRVHMRYVGHSVVGDPLYGRKGDALNQ----------GLQRQFLHSWRMS 291 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMR 313 HPI+ +++ +P D+ E++ ++ Sbjct: 292 FDHPITHEHLQFCDKLPSDLSEVLARLQ 319 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 175/304 (57%), Gaps = 16/304 (5%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 + E +R D LA ++ DYSRS ++ QRV VN K+ K+ G+ + I Sbjct: 5 IIYEKFERERADSYLASIYKDYSRSYFQKLTDRQRVFVNDKIIP-VSHKLKRGDIITIEF 63 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 E EE+ + +P+ I +DI+YED+DI+++NK +VVHP G+ GT+LNAL+ Y A Sbjct: 64 EKEEKFQIKPEKIKIDIIYEDDDIVVVNKRSGIVVHPSYGHLSGTLLNALMGY---SAGK 120 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEP 188 ++HRLDKDT+G++V AKT A+ + + LQ+R + + Y A G + G + P Sbjct: 121 YNPYLIHRLDKDTSGVIVFAKTEKAKISISKQLQKRVVKKIYYAAVKGVIAENRGIIKAP 180 Query: 189 ISRHPTKRTHMAVHPMGKP-AVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 + R P R ++V+P+ K A+T ++++E +T L++R+ TGRTHQIR HM +I HP+ Sbjct: 181 LGRSPKNRKLVSVNPLAKKVAITEFKVIERKDDYTLLKVRIITGRTHQIRSHMKYINHPV 240 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 +GD YGG L++ +RQ LHA + HP + +++ A +P DM Sbjct: 241 IGDKQYGGPGTI----------GLKRCERQMLHAHNITFTHPSTSKTVKFIAQLPNDMKA 290 Query: 308 LIEV 311 + ++ Sbjct: 291 IFKL 294 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 160/312 (51%), Gaps = 19/312 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L +SEN+ + L L S I++ L Q++ VN ++ V ++ Sbjct: 1 MILERIISENEARKTLKHVLKNGLK-LSERLIRKLKLQQKIYVNEHP-ERVNYIVKADDR 58 Query: 65 VAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + ++EEE EPQDIPLD++YEDE ++++NK +VVHP + +PD T+ N +++Y Sbjct: 59 LKVILDLEEECEHIEPQDIPLDVIYEDECMLVLNKQSGIVVHPTSYHPDNTIANGIVYYL 118 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 + V RLD++T+G+++ AK Q L++ + +EY + G Sbjct: 119 KQKGVTKKVRPVSRLDRETSGIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGIPQNNE 178 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTHQIRVHM 240 GT++ PI+R P + G P++THY+I++ F H L +LETGRTHQIRVH Sbjct: 179 GTINLPIARKPGSIMLRHISEEGAPSITHYKILKTFPSHNSALLSFKLETGRTHQIRVHC 238 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + P+ GD +Y RQALH+ + HP++ + + A Sbjct: 239 KAMGFPIYGDTLYSDNTNLF-------------ISRQALHSYRTEIIHPVTLKGVIFKAE 285 Query: 301 IPQDMVELIEVM 312 +P D+ L+E++ Sbjct: 286 LPSDISGLLEIL 297 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 151/306 (49%), Gaps = 20/306 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILD-QRVLVNGKVCDKPKEKVLGGEQV 65 L +SEN + L + +SR + +++NG+ + + + + Sbjct: 5 LKYIISENTTPVTILDFLKK--EGFSRHILSSMKNTPNTIILNGER-GFGRSVLKPQDHL 61 Query: 66 AINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E + L+I+YEDEDI++INKP D+ VHP AGN + T+ N + Y+ Sbjct: 62 IVTVPETESGENIIRTKMDLNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFA 121 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 + ++RLD+DTTG +++AK + L +++R+I R Y A+ G + GT Sbjct: 122 EKGEDFVYRCINRLDRDTTGALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGT 181 Query: 185 VDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ PI+R V+ G+ A+THY + + ++ L LETGRTHQIRVHM +I Sbjct: 182 INAPIARMEGSVITREVNFGTGESAITHYERLAAGKEYSLAELHLETGRTHQIRVHMKYI 241 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL GD +Y R+ +RQ LH+ L HP +G M + AP+P Sbjct: 242 GHPLPGDYLY--------------NPDYRRINRQPLHSYQLEFTHPTTGKVMLFTAPLPI 287 Query: 304 DMVELI 309 D + Sbjct: 288 DFISAF 293 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 157/299 (52%), Gaps = 28/299 (9%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI-NAEIEEEARF 77 R+D +A+ + SR + I V V+ KV +K + G+ ++I N E + + Sbjct: 17 RIDLVVAKHL-NVSRKISRYLIEANSVKVDNKVVNKVNFLLREGQFISILNNYQEPQLKV 75 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PPIADVPRAG 133 E Q + +IVY+D DII+INKP++LVVHPG GN D T++N LLH + + R G Sbjct: 76 EAQKVDFEIVYQDNDIIVINKPKNLVVHPGNGNWDKTLVNGLLHEFATNLSDVNGEIRPG 135 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDEPISRH 192 IVHRLDKDT+GL++VAK A L + L+ EI R+Y A+ +G + ++ PI R Sbjct: 136 IVHRLDKDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVGKIPHTKMRINLPIGRD 195 Query: 193 PTKRTHMAVHP-MGKPAVTHYRIMEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPL 247 RT V K A+T+ ++ F + ++ LETGRTHQIRVH++HI +P+ Sbjct: 196 NQNRTKKVVSSFNSKNAITNVELINTFVYKNEHFSIVKCILETGRTHQIRVHLSHIGYPI 255 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 GDPVYG + Q LHA + H + G M + +P + Sbjct: 256 YGDPVYGKKIDDLG---------------QRLHAYEITFKH-LDGRLMNFKTEMPDEFK 298 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 22/315 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TVS + GQR+D L +S + + V N K KP K+ G+ + I Sbjct: 12 TVSAEESGQRIDNFLIAQLRGVPKSLVYRIVRKGEVRANKKRI-KPDYKLKEGDLIRIPP 70 Query: 70 -EIEEEARFEPQDIP----LD--IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 ++ E ++ L+ I+YED+ +++INKP + VH G+G G ++ L Sbjct: 71 VKVNERPDLPSANLEQVAALEHAILYEDDALMLINKPSGVAVHGGSGLQFG-LIEGLRAL 129 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 P + +VHR+D+DT+GL++VAK L E L+ +E+ ++Y A+ G Sbjct: 130 RPKEKSLE---LVHRIDRDTSGLLLVAKKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKR 186 Query: 183 GT-VDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 V+ P+ ++ K V GK ++T +RI + ++ T + TGRTHQIRVH Sbjct: 187 VRSVEAPLKKNTLKSGERIVRVDAEGKASLTRFRIQQRYKEGTLVEASPVTGRTHQIRVH 246 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 H HP+ DP YG + +R LHA LR HP++G E+ + A Sbjct: 247 ALHAGHPIAKDPKYGDTDFDNTMSR-------LGLNRLFLHAWQLRFLHPVTGKEVAFEA 299 Query: 300 PIPQDMVELIEVMRA 314 P+ ++ + ++ + A Sbjct: 300 PLDDNLQQTLKQLTA 314 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 23/318 (7%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T+SE++ GQR+D L +S I + V VN KP+ K+ G+ V I Sbjct: 16 LTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRI-KPEYKLQTGDVVRIP 74 Query: 69 AEIEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 E P L+ I++ED+ +II+NKP + VH G+G G V+ AL Sbjct: 75 PVRVAEKNDAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLNFG-VIEALR 133 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P + +VHRLD+DT+G++++AK A L E L+ + + ++Y A+ G Sbjct: 134 ALRPEARFLE---LVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQ 190 Query: 181 AG-GTVDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + + + ++ V GKP+ T + I E + T ++ TGRTHQIR Sbjct: 191 SHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRTHQIR 250 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH + HP+ D YG + + +R LHA +R HP +G + + Sbjct: 251 VHTQYAGHPIALDDKYGDKDFDKQMNE-------LGLNRLFLHAFSIRFEHPKNGETLRF 303 Query: 298 HAPIPQDMVELIEVMRAD 315 +A + M +++ +R Sbjct: 304 NASLDHQMKAILQKLRES 321 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 97/318 (30%), Positives = 159/318 (50%), Gaps = 21/318 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT T+SE+ GQRLD+ + + D S + + +++ VNG K ++ V G+ V Sbjct: 2 LTFTISEDAAGQRLDKLVRKALRDVPLSHVYKMFRTRKIRVNGGR-GKAEQLVAAGDVVV 60 Query: 67 INAEIEEE-ARFEPQD------IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 I + E AR EP+ + +++ED D++ ++KP L HPG G T++ Sbjct: 61 IRGDEERLLARQEPEPGARAGAVTFGVLHEDADVLAVDKPAGLAAHPGTGISGATLVEMA 120 Query: 120 LHYYPPIADVP----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR-EITREYEAV 174 + AD+P + HRLD+DT+G+++VAK RL E ++ + Y A+ Sbjct: 121 RAHLGTPADLPPTEFKPSPAHRLDRDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLAL 180 Query: 175 AIGHMTAG-GTVDEPISRHP-TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGR 232 G M GT+D P++ H T R+ A + A+T ++++ + + L + +ETGR Sbjct: 181 VKGKMPREAGTIDLPLAEHEQTARSKAARGVNLQEALTRWKVVSAMKEASLLAVTIETGR 240 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIR H+ + HP++GD YG P R LHA L L HP +G Sbjct: 241 THQIRRHLEAVGHPVLGDRRYGDFPTNRAARQR------WGLRRMFLHAWRLELPHPTTG 294 Query: 293 IEMEWHAPIPQDMVELIE 310 + AP+P +++E + Sbjct: 295 APLRLEAPLPGELLEALS 312 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 152/294 (51%), Gaps = 19/294 (6%) Query: 22 QALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV-LGGEQVAINAEIEEEARFEPQ 80 L E + R ++ + VL++G+ + V G+++ + E +P Sbjct: 26 NLLREEWK-LPRKQVHLLFQHKEVLLDGEPVAQ--HVVGKAGQEIRLRMCKPEALGLDPA 82 Query: 81 DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDK 140 +I+YED+ ++I+NKP L++HP T+ + + ++ + VHRLD+ Sbjct: 83 SEAPEILYEDDHLLIVNKPVGLLLHPTERYHHVTLDHLVSGHFFRTGLEAKVRHVHRLDQ 142 Query: 141 DTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRHPTKRTHM 199 DT+G+++ AK A L E L+ R I R Y A G M G ++EPI + T Sbjct: 143 DTSGVVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIGKDRNHGTRR 202 Query: 200 AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRP 259 V P G PA+THY++ E F+ T++ +LETGRTHQIRVH +HI HPL+GD +YGG+ Sbjct: 203 RVTPNGDPAITHYQVKERFQTATKVECQLETGRTHQIRVHFSHIGHPLLGDELYGGKR-- 260 Query: 260 PKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 RQALHA +L+ HP G +E AP+P D+ L + +R Sbjct: 261 ------------ELIKRQALHAAVLKFEHPFGGEVIEVTAPLPLDLFHLEKKLR 302 >UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium thermophilum RepID=Q67N67_SYMTH Length = 327 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 160/334 (47%), Gaps = 46/334 (13%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V + G RL Q L + SR+ ++ +LV+G+ + + GGE V Sbjct: 1 MRFVVDPSARGLRLSQYLFDRLK-LSRTVVRRAKTSGGILVDGRPA-RTSLVLAGGEVVE 58 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + +E R EP+ IP+ +VYED +++++KP +VVHP GT+ NA+ H+ Sbjct: 59 VRV--AQEGRVEPEPIPIQVVYEDPWLLVVDKPAGMVVHPVRDYVSGTLANAVAHHLLRS 116 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY-EAVAIGHMTAGGTV 185 P A V R+D++T+GL++ AK L L+R+++ R Y V GTV Sbjct: 117 GSDPVARPVQRIDRETSGLVLFAKDPAVAGLLARELERQKLERRYVAVVEGAVAADAGTV 176 Query: 186 DEPISRHPTKRTHMAVHPM---------------------------GKPAVTHYRIMEHF 218 D PI R V G+PAVTH+R++ + Sbjct: 177 DRPIRRVWGHPVAREVAEGPRTPEQERLLAEAAAQGRALREDWTAAGQPAVTHWRVLRRW 236 Query: 219 RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQA 278 T L LRLETGRTHQIRVHMA++ HPL+GD +YGG RQA Sbjct: 237 PAATMLELRLETGRTHQIRVHMAYLGHPLLGDELYGGSRT--------------LIQRQA 282 Query: 279 LHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 LHA L HP++ + + AP+P D+ +L+ + Sbjct: 283 LHAATLAFVHPVTREPVRFTAPLPADLEDLVARL 316 >UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veillonellaceae RepID=D2RJC8_ACIFE Length = 294 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 159/307 (51%), Gaps = 22/307 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 ++L+ V + G + Q A P S ++ + + VNG P ++ G+ Sbjct: 1 MELSYQVDRDHAGCCVRQ--AARGPMHLSEKLWRKIKWNGTITVNGSPVSSPSHRLEAGD 58 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 ++ E E+A P +PL ++YEDED+++++KP +++HP T++ A+ Y+ Sbjct: 59 RLVFRWE--EKAAVIPVHLPLSLLYEDEDLLVVDKPAGMLIHPTWSGARDTLVQAVGGYF 116 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 ++RLD+DTTG+++VAK+ A+ L +I REY AV G Sbjct: 117 RRTGQHCGIHPLYRLDRDTTGVLMVAKSAFAKHALTRDHS--QIYREYLAVCEGRWGIPQ 174 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G ++ PI R V P G+PAVT YRI+E + T L++ L TGRTHQIRVH AH Sbjct: 175 GRIEHPIGRVAEGVDRWTVRPDGRPAVTEYRILEENQEWTVLKIHLLTGRTHQIRVHFAH 234 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 HPLVGDP+YG + + RQALHA +R HP +G E+ AP+P Sbjct: 235 EGHPLVGDPLYGTKD--------------GRIARQALHAWTVRFRHPRTGEEILLTAPMP 280 Query: 303 QDMVELI 309 DM L+ Sbjct: 281 GDMEGLL 287 >UniRef50_B9L8H5 Pseudouridine synthase n=1 Tax=Nautilia profundicola AmH RepID=B9L8H5_NAUPA Length = 311 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 153/298 (51%), Gaps = 24/298 (8%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 + +R+D+ L++ + SR++I++ I + V VN K K K+ G+ V + + E Sbjct: 7 SDKNERVDKFLSQKL-NVSRNQIEQLIKNSLVSVNSKTIKKGGVKLQAGDTVDVEIKEAE 65 Query: 74 EARFEPQ-DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL---HYYPPIADV 129 ++ + + + + ++YEDED+++INKP +VVHP + T+++ L + IA Sbjct: 66 SSKEDYEVNFDIPVLYEDEDVLVINKPPGIVVHPAPSVKEATLVDWLKTKNYRLSTIAGE 125 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 R GIVHR+DK+T+G +++AK A L L+ + + R Y + + VD+PI Sbjct: 126 ERFGIVHRIDKETSGALIIAKNNKAHEFLSAQLKDKTMGRYYIMLLNEPLKEAVCVDKPI 185 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 +R+P R MA G+ A T + + +L TGRTHQIRVH++ I ++G Sbjct: 186 ARNPKNRLKMAYVKNGREAKTLFVPVYENVAAA----KLFTGRTHQIRVHLSTIGRYILG 241 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 D +YG + + K R LHA L HP SG ++ AP+ D + Sbjct: 242 DTLYGKKEQ--------------KLPRVMLHAKELYFIHP-SGKKLSIIAPMFDDFKK 284 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVL-VNGKVCDKPKEKVLGGEQV 65 L T+S G + L + +SR + D+ L +NG+ + + G+ Sbjct: 5 LNYTISAADEGMIVLDFLRKQ--GFSRHILTAMKADREALSLNGQKAG-GRTVLSCGDHF 61 Query: 66 AINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E P + + ++YEDEDI+++NKP D+ VHP GN T+ N + Y Sbjct: 62 RVRLLETVPADGILPTPLNIPVLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVAAYLE 121 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 + ++RLD+DT+G +++AK + L ++ R+I+R Y AV G GT Sbjct: 122 TKGESCPFRCINRLDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQSGT 181 Query: 185 VDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 + PISR + G+ A+THY+++E H+ L + LETGRTHQIRVHM +I Sbjct: 182 ISAPISRAADSVIERRIDFENGESAITHYQLLEVKNNHSLLEIHLETGRTHQIRVHMGYI 241 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL D +Y F RQ LH+ L+ HPI+G M AP+P+ Sbjct: 242 GHPLPADYLY--------------NPVYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVPE 287 Query: 304 DMVELI 309 DM Sbjct: 288 DMSNAF 293 >UniRef50_Q30SG9 Pseudouridine synthase n=5 Tax=Epsilonproteobacteria RepID=Q30SG9_SULDN Length = 323 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 20/313 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +RLD L + SRS+I + I + V V+GKV + K+ + V + E Sbjct: 13 ERLDTFLTSIL-GQSRSQIAQLIKKELVQVDGKVVSRSGVKLKKNQVVLVKFPPAEIKPA 71 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH---YYPPIADVPRAGI 134 D ++I+YED+DI++INKP L VHP + T+++ L H ++ R GI Sbjct: 72 LDIDFDVEILYEDDDILVINKPTGLTVHPAPSVKEATLVDWLKHKGMRLSSLSGEERHGI 131 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISRHP 193 VHRLDK T+G MV+AK L + LQ + + R Y AV + T V PI+R Sbjct: 132 VHRLDKGTSGAMVIAKNNSTHEFLSDQLQDKSMGRYYLAVINPPLKDELTEVIFPIARSS 191 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHT--RLRLRLETGRTHQIRVHMAHITHPLVGDP 251 R MA GK A + ++++ + + +L TGRTHQIRVH+ + +VGD Sbjct: 192 HNRLKMAPLEHGKYAKSAFKVLAYSNDEANQLIACKLYTGRTHQIRVHLESLNRHIVGDH 251 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 +Y P+ K +R LHA ++ HP S + + A + + M E I+ Sbjct: 252 IYAQSPKQEKS------------ERILLHAYIIYFIHPKSKERVSFVASLDKGMQEYIDK 299 Query: 312 MRADFEEHKDEVD 324 + D E+ + +D Sbjct: 300 -KFDMEKIDEIMD 311 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 310 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 101/308 (32%), Positives = 159/308 (51%), Gaps = 19/308 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 Q+ + E + L + S ++ K V G +C+ + +V G+ Sbjct: 2 TQIRVELPEALTSMPVKAFLTQH-EGISSTQWKRIKHSGTFRVGGILCNAARTEVRTGDI 60 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + +I + EP+D+PLDI YED+ ++I+NKP +VHP GT+ NA+L++Y Sbjct: 61 IT--FDIVRPSDIEPEDLPLDIRYEDDYLLIVNKPAGQLVHPTTKEAHGTLGNAVLYWYK 118 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV-ESLQRREITREYEAVAIGHM-TAG 182 + VHRLD++T+GL+++AK Q +L + + REY A+ G + Sbjct: 119 AHGEHHAYHPVHRLDRNTSGLVLIAKVPQVQYKLTPRHGEGKLFHREYLALIEGELTPPE 178 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G +D PI+R V P G+ A THY ++ + + L L+TGRTHQIRVH+AH Sbjct: 179 GLIDAPIARALPSIILRKVSPDGQTARTHYDTVQTDGKLSLIHLVLDTGRTHQIRVHLAH 238 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HPL+GD +YGG L + RQALHA L HP++G E++ P+P Sbjct: 239 LGHPLLGDDLYGGN--------------LARIKRQALHAARLHFRHPMTGAEIDVQVPLP 284 Query: 303 QDMVELIE 310 DM +++ Sbjct: 285 SDMAQIVS 292 >UniRef50_C9KQC1 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQC1_9FIRM Length = 302 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 168/320 (52%), Gaps = 20/320 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++++ TV G+ L Q + S K + VLVNGK + +V G++ Sbjct: 1 MKISYTVDAAHDGRELRQLVRAPL-GLSAKLWKHIKWNGTVLVNGKKNGDARLRVHTGDE 59 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + +E + P D+PLDI+YEDE +++NKP D++VHP T+++A+ Y+ Sbjct: 60 LTLLW--QEVSSVVPVDLPLDILYEDETFLVVNKPADMIVHPTHRAARDTLVHAVAGYFE 117 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGG 183 + ++RLD+DTTG++++AK+ Q + + +I REY A+A GH+ G Sbjct: 118 RRGEAAGIHPLYRLDRDTTGIVILAKSARIQHAMTK--HHGQIYREYLALAQGHLDCLSG 175 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D PI R T+ H V G+ A+T Y + + ++ L++ L TGRTHQIRVH A + Sbjct: 176 RIDMPIGRDITRANHWQVRADGRRALTEYETIASWPAYSLLKIHLLTGRTHQIRVHFAAL 235 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL+GD Y G + RQALHA + +HP +G E+ APIP+ Sbjct: 236 GHPLLGDTAYDG--------------SCDTIPRQALHAWRVHFFHPDTGKEIRIEAPIPE 281 Query: 304 DMVELIEVMRADFEEHKDEV 323 DM LI E K+E+ Sbjct: 282 DMCRLIGSDTVSRETFKEEI 301 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 99/315 (31%), Positives = 149/315 (47%), Gaps = 20/315 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V+ G R D L+++ SR+ I + + G+ K + G+ + ++ Sbjct: 15 FKVTSQFSGCRFDVCLSKLM-GVSRASAISLIERNQAKILGRKSQKSS-ILQDGDTIVVD 72 Query: 69 ----AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV---LNAL-L 120 AE +EE E + I+Y D+D+++I+KP + H G TV L A+ + Sbjct: 73 QKESAEQKEEQNNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAVGI 132 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + D R GIV RLD T+GLM+V KT A + + + + Y A+ G + Sbjct: 133 DIKTTLCDESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQGDLA 192 Query: 181 AGG-TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 T+D PI R + GKPAVTH+ ++E F T + + LETGRTHQIRVH Sbjct: 193 QDKATIDAPIGRAKVSDFRFTITSDGKPAVTHWDVLERFSQATLVSVNLETGRTHQIRVH 252 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + I HPLVGD +YG P ++ RQ LH+ L HP +G + + Sbjct: 253 FSSIGHPLVGDSMYGANP---------VLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKS 303 Query: 300 PIPQDMVELIEVMRA 314 P D+ +E MRA Sbjct: 304 HYPLDLQHALEAMRA 318 >UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBV3_SORC5 Length = 345 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 116/342 (33%), Positives = 166/342 (48%), Gaps = 37/342 (10%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDY----SRSRIKEWILDQRVLVNGKVCDKPKE 57 A + V + RLD+ + + SR+ ++ WI RVLV+G+ + Sbjct: 5 AGALHFRFRVDDGDPRDRLDKLVVHLLERAGHAASRAAVQRWIAAGRVLVDGEPA-RASV 63 Query: 58 KVLGGEQVAINAEIEEEARFEPQ-DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 V V + E + + D+ + +VYEDE +++I+KP LVVHP G+ GT++ Sbjct: 64 AVRASALVEVRPEEPSPSPTAAEPDVVIPVVYEDEHLLVIDKPAGLVVHPARGHASGTLV 123 Query: 117 NALLHYYPPIADVP----------RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166 N LL P A P R GIVHRLD+ T+GL+VVAK P + L + R Sbjct: 124 NGLLA-LPGFALAPADPRDPMGHVRPGIVHRLDRGTSGLLVVAKDEPTREALKDRFARHA 182 Query: 167 ITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMG------------KPAVTHYRI 214 I REY A+ G T D RHPT R G + AVTH R+ Sbjct: 183 IEREYAAIVAGE-ARDATYDTLHGRHPTDRLRFTSWIRGGAGAPGSHVAAPRRAVTHVRV 241 Query: 215 MEHFRV-HTRLRLRLETGRTHQIRVHMAHIT-HPLVGDPVYGGRPRPPKGASEAFISTLR 272 +E T + LETGRTHQIRVH+A P++GDP+YG P+ P A + Sbjct: 242 IERLGDAATVVACSLETGRTHQIRVHLAERGRTPVLGDPLYGKPPKKP-----AVRAIAE 296 Query: 273 KFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 + RQALHA +L HP + + W + +P DM + ++ +RA Sbjct: 297 ELGRQALHARVLGFIHPATQKPVRWESALPADMRKALDQLRA 338 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 99/307 (32%), Positives = 158/307 (51%), Gaps = 19/307 (6%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV G ++ L + + + + + +++ V VNG+ + E + G+++ ++ Sbjct: 13 TVPAKWNGISIESLLKIEW-EIPKKLLHQLRMEKGVTVNGEQ-RRWNELLKEGDKLQVHM 70 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 +EEE EP+ L +VYED+ ++I+NKP + HP GT+ N + ++ Sbjct: 71 FMEEEYDVEPEYGELHVVYEDDHVLIVNKPEKMDTHPSEKGGMGTLANLVAFHFQMQGLE 130 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEP 188 + +HRLDKDTTG +V AK A + L R+I R Y A+ G + GT+D Sbjct: 131 TKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVKKKQGTIDAA 190 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQIRVHMAHITHP 246 I R T V P G A+T+Y++ E+F+ T + L+LETGRTHQIRVHM++ +P Sbjct: 191 IGRDRHHATRRRVSPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTHQIRVHMSYNGNP 250 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 LVGD +YGG + RQALHA + HPI+ E+E P P + Sbjct: 251 LVGDVLYGGGTKY--------------MSRQALHAMKINFLHPITKEEIEVDVPFPTKLN 296 Query: 307 ELIEVMR 313 + ++ + Sbjct: 297 DTMKAFQ 303 >UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterales RepID=A7I2U9_CAMHC Length = 357 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 160/325 (49%), Gaps = 39/325 (12%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR-- 76 RLD L ++ SR++I I + + VN V +K K+ + V IN +++E Sbjct: 24 RLDIFLTKILK-ISRNKILNLIEENHIFVNNSVQNKASFKLKNDDIVGINFPLKKENENL 82 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL---HYYPPIADVPRAG 133 + + ++I+YED+D++++NKP +VVHP + T+ L + I RAG Sbjct: 83 KQNANFDIEILYEDDDLLVLNKPSGVVVHPAKSVKEPTLAEWLKQKKYMLSSINGDERAG 142 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 IVHRLDK T+G ++VAKT A +L L+ + + R Y A + VD I+R+P Sbjct: 143 IVHRLDKQTSGAILVAKTDFAHVKLAAQLKDKSMGRIYLAFLDLALKENVCVDRFIARNP 202 Query: 194 TKRTHMAVHP----MGKPAVTHY------RIMEHFR---------VHTRLRLRLETGRTH 234 + R AV P + A + + I+++F+ + +L TGRTH Sbjct: 203 SNRLKKAVVPPNENGARSAKSAFLNIANDTILQNFKPLNFSQNQTNFNLIAAKLFTGRTH 262 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH++ I ++GD +YG F S K R LHA +L HP + + Sbjct: 263 QIRVHLSSINRHIIGDFLYG------------FKSDFDKIKRIFLHAYLLYFTHPRTNRQ 310 Query: 295 MEWHAPIPQDMVELIEVMRADFEEH 319 + A IP + LIE ++DF++ Sbjct: 311 ILISAKIPSEFKNLIE--KSDFKDE 333 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 143/318 (44%), Gaps = 23/318 (7%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T+S ++ GQR+D L +S I + V VN KP+ K+ G+ V + Sbjct: 11 ITISADEAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRI-KPEYKLADGDVVRVP 69 Query: 69 AEIEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 E LD I++ED+ ++++NKP VH G+G G V+ L Sbjct: 70 PVRVAEREEVQVSAKLDKVAALADCILFEDDYLLVLNKPSGTAVHGGSGLSFG-VIEGLR 128 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G Sbjct: 129 ALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALVRGQWQ 185 Query: 181 AGGT-VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + + P+ ++ + V GKP+ T ++I E F T ++ TGRTHQIR Sbjct: 186 SHCKAIQAPLLKNIMQSGERVVKVSSEGKPSETRFKIEERFEHATLVKASPVTGRTHQIR 245 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH H HP+ D YG R + R LHA LR HP +G M Sbjct: 246 VHALHAGHPIAFDDRYGYREFDQQLQG-------TGLHRLFLHAAALRFEHPNTGETMRI 298 Query: 298 HAPIPQDMVELIEVMRAD 315 AP+ + + +R + Sbjct: 299 EAPLDNQLRHCLLALRKN 316 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 154/329 (46%), Gaps = 23/329 (6%) Query: 8 TATVSENQLGQRLDQALAEMFP----DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 TV + GQR+D L + RS I + V VN + KP ++ G+ Sbjct: 21 RVTVDAHYAGQRIDNFLLRELGATHGEVPRSLIYRILRTGEVRVNSQRA-KPTTRLATGD 79 Query: 64 QVAIN-AEIEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDGT 114 +V I +++ ++ I + IVYEDE ++ +NKP L VH G+ P G Sbjct: 80 EVRIPPLKLQSPSQESAGVISANWLARAADMIVYEDEALLAVNKPAGLAVHGGSNIPFG- 138 Query: 115 VLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ-RREITREYEA 173 ++ + + + + HR+D+DT+GL+++AKT L + ++Y A Sbjct: 139 LIELMRQH---TGLGEKLELAHRIDRDTSGLLILAKTRATLHSLQTQFRPEGHAEKQYLA 195 Query: 174 VAIGHMTAG-GTVDEPISRH--PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLET 230 + GH VD P+ + + + V+P GK AVTH+ ++ + T LR +LET Sbjct: 196 IVHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQGKEAVTHFAVLAANKNATLLRAQLET 255 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVH AH HP+VGD YG R + S R+ LHA L L HP Sbjct: 256 GRTHQIRVHTAHENHPIVGDEKYGQREWDKRLFPSTGASARRR-PPLLLHAYRLMLTHPQ 314 Query: 291 SGIEMEWHAPIPQDMVELIEVMRADFEEH 319 + ++ APIP L + + EH Sbjct: 315 TEQPLQLTAPIPDKWRSLAQQLNLTLPEH 343 >UniRef50_Q3AD19 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD19_CARHZ Length = 301 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 155/316 (49%), Gaps = 19/316 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++++ V++ +G+ + Q L S+ ++++ L V N + GE Sbjct: 1 MEISLPVNQEYIGKTVFQFLKSH--GLSKRQLRKLKLQNAVFFNNRPVPLNSHLTTPGEV 58 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V I + Q+ P+ ++YED+ +I+I+KP ++ HP + ++ L YY Sbjct: 59 V-IKLPHTLPPAVQSQNAPVKVLYEDDYLIVIDKPAGVLAHPVKNHFAPSMQELTLSYYR 117 Query: 125 PIADVPR-AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 + ++RLD++T+G M++AK L SL++R+I + Y A+ G + Sbjct: 118 DKGRIFEGFYPIYRLDRNTSGPMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGPLADKS 177 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G ++ P+ AV P G+PA T Y+ ++ F HT L++ L TGRTHQIR H A Sbjct: 178 GIINLPLGLLEGSIIKRAVVPGGQPACTKYQTVKAFPTHTLLKVELLTGRTHQIRAHFAA 237 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HPL GD +YGG+ + +RQALH + HPI+ + +AP+P Sbjct: 238 IGHPLAGDDLYGGK--------------MDLIERQALHLYYISFPHPITKKTISLYAPLP 283 Query: 303 QDMVELIEVMRADFEE 318 +D E + ++ E Sbjct: 284 RDFKEALITLKKASGE 299 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 306 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 164/324 (50%), Gaps = 30/324 (9%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+++ + TVSE G ++Q + + + S ++ + +L+N K ++ V Sbjct: 1 MSRKDWIEYTVSEQDTGMNVEQIVRQKL-NVSGRMMQRLTRSKGILLNRKQPFLQRQ-VK 58 Query: 61 GGEQVAIN-AEIEEEARFEPQ----------DIP-LDIVYEDEDIIIINKPRDLVVHPGA 108 G+ +A+ E +E+ +PQ +P +DI+YED+ ++I NKP ++VHP Sbjct: 59 AGDTIAVRVIERQEQVPRQPQHDTKPEGPNTPMPSIDILYEDDHLLIANKPAGMMVHP-I 117 Query: 109 GNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 T+++AL + VHRLDKDT+G ++VAK+ L+ I Sbjct: 118 KQETDTLVHALAAVLAARGEQTSVHPVHRLDKDTSGAILVAKSSYGHQLADRLLREGGIH 177 Query: 169 REYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLR 227 REY AVA G ++ G GT+D PI R T V G PA+THY + + T R+ Sbjct: 178 REYLAVASGVLSEGAGTIDAPIGRDARHPTKRRVVESGDPAITHYEVQQTSEEMTLARVW 237 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 LETGRTHQIRVH AHI HPL GD +YGG RQALHA+ L Sbjct: 238 LETGRTHQIRVHFAHIGHPLAGDTMYGG--------------ARGLLRRQALHASKLSFL 283 Query: 288 HPISGIEMEWHAPIPQDMVELIEV 311 HP+ E+ APIP DM L++ Sbjct: 284 HPLLEKEIVVEAPIPSDMKRLMQA 307 >UniRef50_B0TDX6 Pseudouridine synthase, rlua family n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDX6_HELMI Length = 339 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 101/336 (30%), Positives = 150/336 (44%), Gaps = 33/336 (9%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 + L V + G+R+ L + +SR R++ +NGK +V G Sbjct: 4 SKEWLAHRVKPEEEGRRIGSIL-QFCLGFSRRRLQILTRTDGFRLNGKRAHL-DRRVKEG 61 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHP--GAGNPDGTVLNALL 120 + + + EEE P + L ++YED D++I++KP + VHP T+ + + Sbjct: 62 DLLEVCLHQEEEGNLAPVAMELKVLYEDADLLILDKPPGIEVHPPEQRARFRPTLAHGVA 121 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HY+ R +HRLDKDTTG+ V AK A L L+ + R Y A+ G Sbjct: 122 HYFAEKGIKARVRPLHRLDKDTTGICVFAKNAFAHQALDRQLRNGSLQRGYLAILRGLPA 181 Query: 181 AG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIM--------------EHFRVHTRLR 225 G +D PI R P V G+ A+T YR+ E Sbjct: 182 ELVGVIDAPIGRDPEHHMRRMVRDDGERAITRYRVTQVIEPSGLEMKGAAESEGHWALAE 241 Query: 226 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLR 285 + LETGRTHQIRVH H+ PL+GD +YGG + DRQALH+ + Sbjct: 242 VILETGRTHQIRVHFRHLGTPLLGDRLYGGDS--------------PRIDRQALHSAWVT 287 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKD 321 L P SG ++ A +P+DM L+ D +++D Sbjct: 288 LLQPRSGEAVKVTAELPEDMARLLGGKANDGSKNED 323 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 95/321 (29%), Positives = 145/321 (45%), Gaps = 21/321 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A RV T+ E + GQRLD L +SR+ I V VN K ++ Sbjct: 8 ANRVTF-VTIDEGRHGQRLDNFLFTHLKGVPKSRVYRIIRSGEVRVNKGRA-KQTTRLCT 65 Query: 62 GEQVAINAEIEEEARFEP-------QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGT 114 G+ V + ++ + + VYED+ + + NKP L VH G+G G Sbjct: 66 GDVVRVPPIRTSDSTAPAAVSEGLAERLRRACVYEDDQLFVFNKPAGLAVHGGSGVSLG- 124 Query: 115 VLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 174 ++ AL +P ++ +VHRLD+DT+GL++VA+ +L +Q +I + Y + Sbjct: 125 LIEALRVMFPQERELE---LVHRLDRDTSGLIMVARRRSFLRKLQRLMQGGQIEKRYWLL 181 Query: 175 AIGHMTAGGTVDEPISRHPTKRTH-MAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 G T+D P+ + + V GKP+VTH+R++E F + LETGRT Sbjct: 182 CQGFKGKERTLDAPLLKMMNGNERIVRVSREGKPSVTHFRLLERFAQAQLVEATLETGRT 241 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH L+GD YG A + R LHA L HP +G Sbjct: 242 HQIRVHSQFGGFALLGDSKYG-------IAKGEALLAEIGRRRLCLHARTLVFVHPNTGK 294 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 + AP+ D ++ +R+ Sbjct: 295 RLTVTAPLDDDYEAILTALRS 315 >UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB6_WEIPA Length = 305 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 22/303 (7%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQ--RVLVNGKVCDKPKEKVLGGEQVAINA 69 +++ R+ LA+ S R+ I +VL+N + + V G+ V + Sbjct: 8 NQSDSTLRIKTFLAQR--GVSH-RMFAIIKRGGGQVLLNHRPVRTLDD-VEPGDLVEVKM 63 Query: 70 EIEEEARFEP-QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-PPIA 127 E+ D+P+ I+YEDE+ ++++K + PG + + T++N + Y A Sbjct: 64 PAEKSNAIVAASDLPIKILYEDENWLVVDKVAGVTSVPGKADRETTMVNRVKGYLISEGA 123 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVD 186 + +V RLD+ T+G+ ++AK A L + LQ + + Y A+ G + G +D Sbjct: 124 EDLVPHVVTRLDRFTSGVALLAKHRFAHGLLDKQLQTHTVDKRYYAIVDGIVPDDHGFID 183 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI R V G+P+ T Y ++ T ++++L TGRTHQIRVH +I HP Sbjct: 184 APIGRMDNDFIRREVRADGRPSQTEYWVVNRMPNQTLVKVQLHTGRTHQIRVHFKYIGHP 243 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+GD +YGG R +RQALHA L Y P S I+ +P+P+D+ Sbjct: 244 LIGDEIYGG-------------PMDRGIERQALHAYWLEFYDPFSEIKRHIQSPLPEDLK 290 Query: 307 ELI 309 +++ Sbjct: 291 QIL 293 >UniRef50_Q1D9A6 Pseudouridine synthase n=2 Tax=Cystobacterineae RepID=Q1D9A6_MYXXD Length = 316 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 23/311 (7%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV ++ GQR+D + E SR+R+K V VNG+ K + G+ +A+ Sbjct: 8 TLTVDADKAGQRVDLFIGEAL-GLSRARLKRLFEAGAVKVNGRPAKK-GLTLTAGQHIAV 65 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E E D PL +++ED+ ++ ++KP HP GTV NAL+ YP A Sbjct: 66 EVEEESREAVPDADFPLTVLHEDDSLVFVDKPAGRPSHPLQSGETGTVANALVARYPECA 125 Query: 128 ----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 D G+ HRLD +T+G++V A+T A + E+ R + + Y A+ G +T G Sbjct: 126 LASLDAREGGLCHRLDVETSGVVVAARTRDAWNAVREAFGSRAVDKRYLALVTGPLTDEG 185 Query: 184 TVDEPISRHPTKRTHMAVHPMG----KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +D P+ HP + P G + AV+ + ++ + + +++ TG HQ+R H Sbjct: 186 DIDLPLRHHPRHPDRVEPAPYGAEDARDAVSKFTVLSRSGEFSVVEVKILTGVLHQVRAH 245 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 +A I P+VGD +YGGR P + R LHA L L HP + M H+ Sbjct: 246 LAGIGAPIVGDSLYGGREAP-------------ELGRFFLHARSLGLTHPQTRRNMTVHS 292 Query: 300 PIPQDMVELIE 310 P+P ++ +E Sbjct: 293 PLPPELRAELE 303 >UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BL50_9LACT Length = 296 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 20/295 (6%) Query: 23 ALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE-EEARFEPQD 81 L E +++ + + ++LVNG+ K V G+ + + E E P Sbjct: 18 FLQE--KGITKTFLAHVKRNGKLLVNGREEIVLKTLV-PGDVLTMVIPPEGEHETVVPSH 74 Query: 82 IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA-DVPRAGIVHRLDK 140 IPLDI++ED+ ++I+NKP+ P +PD ++ N + Y +V RLD+ Sbjct: 75 IPLDILFEDDYLLIVNKPQGTASIPSQLHPDQSMANRVKGYLQTTRTQDCVTHVVTRLDR 134 Query: 141 DTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH--MTAGGTVDEPISRHPTKRTH 198 DTTG+M+ AK + ++L+ + I + Y A+ + +D PI R + Sbjct: 135 DTTGVMMFAKHRVVHAWMDQALRNKTIQKTYHAIVTKQDVLKEHDLIDAPIGRTDDSIIN 194 Query: 199 MAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR 258 V P GKP++T Y + E ++ +++RL TGRTHQIRVH + + PL+GD +YGG Sbjct: 195 RCVRPDGKPSLTEYWLEETYQHSQLVKIRLHTGRTHQIRVHFSWLGCPLLGDDLYGGEKI 254 Query: 259 PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 P RQALH + L HP++G +M A +P+DM E IE R Sbjct: 255 EP-------------LMRQALHCSQLDFVHPMTGEKMCVKALLPKDMAEWIEKDR 296 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 22/302 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 L ++ G L+QA + + + EW + + V +N + + +++ Sbjct: 21 WLLFEAPKSWGGLSLEQAFQTKW-FVPKKMLHEWRMTKGVAINDNIAP-FHTIISPNDRI 78 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 I + EE+ P +PL IV+ED+ ++++NK + VHP T+ NA+ ++ Sbjct: 79 RIRIK-EEQIEPTPTYVPLHIVFEDDHVLVVNKRAHMDVHPTQPGQTNTLANAVAFHFQC 137 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 + +HRLD+DT+G+++ AK A L + L +R I R Y A+ G++ GT Sbjct: 138 EGIYSKVRHIHRLDRDTSGVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGT 197 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAH 242 ++ PI R T V G A+THY +++ + + +RL L+TGRTHQIRVHM++ Sbjct: 198 IEAPIGRDRHHPTRRRVSKTGDTAITHYERLQYDKQKHVSLVRLTLDTGRTHQIRVHMSY 257 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HPLVGD +YGG+P DRQALHA L HP + + A +P Sbjct: 258 IGHPLVGDTLYGGKPW---------------IDRQALHAFSLSFLHPFTEELITCSA-LP 301 Query: 303 QD 304 + Sbjct: 302 DE 303 >UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Methanococcus RepID=A4FXG9_METM5 Length = 298 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 163/313 (52%), Gaps = 19/313 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 +Q+ L T+ G +L L + F + S IK++ ++++ VN K K+ Sbjct: 3 SQKKILKVTIDSKIAGNKLIDVLKDDF-ELSNKMIKKFDKEKKIFVNSKNISLKS-KLKE 60 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 E V++ + +P+ + L ++YED+D++I++KP+++VVHP GT+ NA+ + Sbjct: 61 NETVSVEIDCGI-NNIDPEKLLLCVIYEDDDLLIVDKPKNMVVHPTKNVLSGTLANAISN 119 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 + + V+RLD DTTGL+++AK + +L + + + + Y V GH+ Sbjct: 120 HQKINNQNYKIRFVNRLDMDTTGLLIIAKNSYSHQQLAKQMDEGILEKIYIVVVNGHLDS 179 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G +++ I + + GK + T Y+++E F + L ++L TGRTHQIRVH+ Sbjct: 180 KEGVIEDSIDLN-DDGIKRELSTFGKISKTKYKVIEEFNNVSVLEIKLLTGRTHQIRVHL 238 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + + ++GD +YG T +RQALH+ +LR HPI+ ME + Sbjct: 239 SSFGNNIIGDTLYG--------------KTADLIERQALHSHILRFIHPITKENMEIRSK 284 Query: 301 IPQDMVELIEVMR 313 +P DM LI+ ++ Sbjct: 285 LPDDMENLIKNLK 297 >UniRef50_Q2GEQ1 Ribosomal large subunit pseudouridine synthases, RluA family n=4 Tax=Neorickettsia RepID=Q2GEQ1_NEOSM Length = 330 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 155/312 (49%), Gaps = 20/312 (6%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 V+E G RLD L P +SRS IK I R+ GK+ +P +V+ GE+ + Sbjct: 3 KCIVAECDAGNRLDVFLHRCLPFFSRSFIKHCIKGSRIESEGKIQLEPSRRVVVGEEYHL 62 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E PLD+ YED+ +++I KP LVVHPG GN + T++N L H+YP Sbjct: 63 FDLPLERKPRHAFVQPLDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEK 122 Query: 128 ----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-G 182 D R GIVHRLDKDT G ++VAKT PA L + ++ I REY A+ + Sbjct: 123 LSSLDSSRPGIVHRLDKDTAGFLIVAKTNPAHLSLSQMIKEGVIRREYLALVHSVPASLS 182 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 240 G + +PI R +R M GKPA+T+Y ++ R + + RL +GRTHQIR+HM Sbjct: 183 GEIKKPIKR--GQRKMMIGRCSGKPALTYYGVIARTVDRKCSLVHCRLGSGRTHQIRLHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 I P+VGD +YG A AL A L+ HP + M ++ Sbjct: 241 KSIGCPVVGDKLYGLNRDADLCA-----------PHHALWAYSLQFRHPFTRKNMAFYIE 289 Query: 301 IPQDMVELIEVM 312 + +E + Sbjct: 290 PASIIQPFLEKI 301 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 95/275 (34%), Positives = 143/275 (52%), Gaps = 8/275 (2%) Query: 46 LVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVH 105 ++G+ C KP K+ GEQ+ + ++ LDI+Y+D+ I +INKP ++ H Sbjct: 2 TIDGEPC-KPAHKLSAGEQLIVKPIAAYSDEQIGVNVHLDIIYQDDRIAVINKPAGMITH 60 Query: 106 PGAGNPDGTVLNALLHYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 162 P G+ GT+ L +P I R GIVHRLD+DT+G++V+AK A L Sbjct: 61 PAKGHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLDRDTSGVIVIAKDDAAHEFLKTQF 120 Query: 163 QRREITREYEAVAIGHMTAGGT-VDEPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHF 218 Q R +EY A+ IG ++EP+ HP R MA+ GK A T Y ++E + Sbjct: 121 QDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRERMAIRRGDDEGKDAQTFYEVLERY 180 Query: 219 RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQA 278 + ++ +TGRTHQIRVH+ H HP++ DP+YG R G + +R A Sbjct: 181 QGFAAIKALPKTGRTHQIRVHLMHAGHPVLCDPLYGSRRFLSLGELQHDDDRTVLLNRTA 240 Query: 279 LHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 LHA + + HP G E+ AP+P D+ ++R Sbjct: 241 LHAHRIAIAHPDDGEIREFIAPLPADLERTQNMLR 275 >UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacteria RepID=Q21K97_SACD2 Length = 321 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 152/333 (45%), Gaps = 32/333 (9%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQ VQ TVSE++ GQRLD L +S I I V VN KP+ K+ Sbjct: 1 MAQNVQF-LTVSEDEAGQRLDNYLLARLKGVPKSLIYRVIRKGEVRVNKGRA-KPERKLA 58 Query: 61 GGEQVAINAEIEEEARFEPQDIPLD----------IVYEDEDIIIINKPRDLVVHPGAGN 110 GG+ V + E+ P+ +P+ ++ ++ +++NKP L VH G+G Sbjct: 59 GGDVVRVPPVRVAES---PEPVPISKTLKGVLDNAVIADEPGYLVVNKPAGLAVHGGSGV 115 Query: 111 PDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ-RREITR 169 G ++ AL +P + +VHRLD+DT+G ++VAK L E + + I + Sbjct: 116 TLG-LIEALRQAFPQYS---YLELVHRLDRDTSGCILVAKKRSMLRYLQELFRGEKRIHK 171 Query: 170 EYEAVAIGHMTAGG-TVDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRV-HTRLR 225 Y A+ IG + VD P+ R + V GKP+ T + +++ F T + Sbjct: 172 RYLALVIGRWPSRRNLVDAPLLRKELQSGERIVRVSLDGKPSKTEFNVVQRFGESATLVE 231 Query: 226 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLR 285 R TGRTHQIRVH H HPLVGDP YG +R LHA L Sbjct: 232 ARPITGRTHQIRVHAQHQGHPLVGDPKYGNEVFD-------LSVKKLGVNRLFLHAAGLS 284 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMRADFEE 318 + G ++ P+P ++ ++ F + Sbjct: 285 FKN-ADGEQVNIEVPLPAELQSVVAAFDGHFNQ 316 >UniRef50_B0SGK3 Pseudouridylate synthase, 23S RNA-specific n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SGK3_LEPBA Length = 312 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 27/316 (8%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVN---GKVCDKPKEKVL 60 +Q+ TVSE+ RLD L + D SRS +++WI V N +V K KV Sbjct: 1 MQIFVTVSEDYDQSRLDVFLKDNAGDDLSRSTVQKWIDSGFVT-NKTKDQVVHKNGYKVA 59 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE+ ++ +R EP + + ++Y++++ ++I+K + H G G+ +++N LL Sbjct: 60 LGEEFVVDVIARPPSRLEPIAMDIPVLYDEDEFMVIHKKAGIACHSGPGDDSPSLVNGLL 119 Query: 121 HYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA-I 176 + + + R GIVHRLDK T G++++AKT A L + Q R + + Y A Sbjct: 120 YQFKNLSGTGGERRPGIVHRLDKPTEGVLIIAKTDRAHAALSKLFQDRLVEKTYYAWVLQ 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIME-----HFRVHTRLRLRLETG 231 + A GT++ PI RHP +R M V G+ A+THY+ + R + ++L LETG Sbjct: 180 APVEAEGTINMPIGRHPVERVKMCVREDGRMAITHYKTEKIVQTQTGRKFSLMKLGLETG 239 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVHMA + P+VGD +Y + L A L HP Sbjct: 240 RTHQIRVHMAKVGCPVVGDSLYSRSAKDYTQYG------------LLLFAKKLDFPHPFV 287 Query: 292 -GIEMEWHAPIPQDMV 306 + P+ Sbjct: 288 PDKRIVVELDFPERFK 303 >UniRef50_Q1AVY4 Pseudouridine synthase n=2 Tax=Rubrobacteridae RepID=Q1AVY4_RUBXD Length = 305 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 120/294 (40%), Positives = 165/294 (56%), Gaps = 22/294 (7%) Query: 30 DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYE 89 SRSR + + + V G+ P +V GGE V E E ++IP+ I++E Sbjct: 26 GISRSRAQRLLAEGLARVGGEAAA-PSLRVRGGEVVEARLPEE---GLEAEEIPVPILFE 81 Query: 90 DEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVP-RAGIVHRLDKDTTGLMVV 148 DE I +++KP +VVHPGAGN GT++NALL + P R GIVHRLD+DT+GLMVV Sbjct: 82 DEHIAVVDKPAGMVVHPGAGNRSGTLVNALLGRGIAGGEDPERPGIVHRLDRDTSGLMVV 141 Query: 149 AKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGGTVDEPISRHPTKRTHMAVHPMGKP 207 AK PA +RLVE L R + R Y A+ +G + GTVD P+ R P MA +G+P Sbjct: 142 AKGEPAYSRLVEMLAARRVRRVYRALVVGEGLPPSGTVDSPVGRDPENPALMAAG-VGRP 200 Query: 208 AVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAF 267 AVTH+ ++ HT LR+RLETGRTHQIRVH++ I +P+ DP+YG Sbjct: 201 AVTHFEVLGEAAGHTMLRVRLETGRTHQIRVHLSAIGYPVYADPLYG------------- 247 Query: 268 ISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKD 321 R LHA L HP G +++ +P+P+++ + A FEE D Sbjct: 248 --RAVPGRRLWLHAERLSFEHPAEGRPLDFFSPVPEELRRAAAELDARFEELLD 299 >UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cystobacterineae RepID=Q1D114_MYXXD Length = 306 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 152/318 (47%), Gaps = 17/318 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQ+ V G+RLD+ L++ P + R + I V + GK C +P K+ Sbjct: 1 MAQQ---KVQVPREAAGERLDRFLSKQVPGINLERARALIDSGAVRIRGKRC-QPTRKLW 56 Query: 61 GGEQVAINAEIEEEARFEPQDIP-LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 GGE++ + A + P L ++++D ++I+NKP +VV P +V+ L Sbjct: 57 GGEEIELERPEPRAASVAASEGPVLPVLHDDSALVIVNKPPGIVVEP--EGRAASVVGLL 114 Query: 120 LHYYPP--IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 PP + + + G+VHRLD++T+G + A+T A L+ S Q + + + Y + +G Sbjct: 115 AAQRPPFDVEGLAQPGVVHRLDRETSGCLAFARTDTAAAALLRSFQEKRVDKRYWTLVLG 174 Query: 178 HMTAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 A G ++ P +R P P + A + + E F L + L+TGRTHQ+ Sbjct: 175 QPPAQGRLEGPYARDPADPRRFTTRVPSARRAALSFEVRERFADAALLEVDLDTGRTHQV 234 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RV ++ P++ D +YG + R RQALHA L L P +G + Sbjct: 235 RVQLSEAGFPVLADSLYGP-------PEARAHAAARALGRQALHAFTLELPSPATGQPVR 287 Query: 297 WHAPIPQDMVELIEVMRA 314 AP+P+D + V+R Sbjct: 288 VEAPLPEDFQRALTVLRG 305 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 144/313 (46%), Gaps = 20/313 (6%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKVLGG 62 V L + +N+ G + L + +SR + + VNG K+ Sbjct: 23 NVILRWEIKKNEQGMLIKTYL-QQIHHFSRRLLISLKKVPSSIQVNG-TSQWVTYKLKRE 80 Query: 63 EQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + + E+ + P+ +PLDI+YED +++NKP P + T+ N L + Sbjct: 81 DILTVALPDEKPSDAITPEKLPLDIIYEDAYCLVVNKPAGQACLPSMNHRHNTLANGLTY 140 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 YY + IV RLD +T+GL++VAK + Q I R YEA+ G + Sbjct: 141 YYQKNSIPSTVHIVTRLDVNTSGLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHGEVSP 200 Query: 181 AGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 G VD PI+R V GK A T+YR++ + + + ++LETGRTHQIRVH Sbjct: 201 TSGIVDAPIARKEGSIIERTVDMRNGKYAKTNYRVLYADSIASWVEIKLETGRTHQIRVH 260 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++ H L GD +YGG RQALH + + HPI ++ A Sbjct: 261 FQYLGHSLYGDNLYGGSKDIML--------------RQALHCKQITMMHPIKNQPIQLEA 306 Query: 300 PIPQDMVELIEVM 312 +P+DM L++ + Sbjct: 307 SLPEDMGILLKRL 319 >UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=B3PEU4_CELJU Length = 349 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 95/321 (29%), Positives = 147/321 (45%), Gaps = 27/321 (8%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T+ GQRLD L +SRI + V VN K +P K+ G+ V + Sbjct: 38 LTIDAELAGQRLDNFLMAQLKGVPKSRIYNLVRKGEVRVN-KGRSRPDYKLCAGDLVRVP 96 Query: 69 AEIEEEARFEPQD---------IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 EAR + +++E+E +++INKP L VH G+G G ++ L Sbjct: 97 PVRTAEARVAAPAKAGNQLVALLDQSVLFENEGLLVINKPPGLAVHGGSGVNLG-LIETL 155 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR---EITREYEAVAI 176 P +VHRLD+DT+G ++VAK L +L+ + +I + Y A+ + Sbjct: 156 RQMRPEAR---YLELVHRLDRDTSGCIMVAKKRSYLRHLQAALRDKVEGQIEKVYCALVV 212 Query: 177 GHMTAG-GTVDEPISRHPT--KRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 GH A V+ P+ R ++ VHP GKP++T + +++ ++ T + R TGRT Sbjct: 213 GHWPARLHQVNAPLLRTEVGADERYVRVHPDGKPSLTLFNVIQRYQGFTLVEARPVTGRT 272 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH H H LVGD YG ++ R LHA+ L P Sbjct: 273 HQIRVHARHAGHGLVGDEKYGDDDINLHMRNQ-------GIKRLFLHASSLGFCLPGEAQ 325 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 AP+PQD+ + + + + Sbjct: 326 MTWVEAPLPQDLAQPLSCLES 346 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 21/315 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 + E+ GQR+D L + +S I + V VN D + ++ G+ V + Sbjct: 164 IDESAAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRID-AQYRLAFGDVVRVPPV 222 Query: 71 IEEEARFEPQDI-------PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 A +I++ED+ II++NKP + VH G+G G V+ + H Sbjct: 223 RVAAADLARAAGPAPVPAAEFEILFEDDAIIVLNKPAGVAVHGGSGVAFG-VIEQMRHAR 281 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 P + + HRLD++T+G++++AK A L E ++ + + Y A G A Sbjct: 282 PHAKFLE---LAHRLDRETSGILMLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAADW 338 Query: 184 ----TVDEPISRH--PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 V P+ ++ P + V G P+ T + +++ + + + L+TGRTHQIR Sbjct: 339 GRRRVVKAPLFKYATPDGERRVRVQEDGLPSHTVFNLVDRWPDYALVEAELKTGRTHQIR 398 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH+AH+ P+VGD YG A + + R LHA LRL HP++G +++ Sbjct: 399 VHLAHLGLPIVGDAKYGDFALNKALAR---ANAVPSIKRMFLHAHRLRLAHPLTGEPLQF 455 Query: 298 HAPIPQDMVELIEVM 312 AP+P + + I+ + Sbjct: 456 DAPLPAECRQFIDQL 470 >UniRef50_B8DF66 Pseudouridine synthase n=18 Tax=Listeria RepID=B8DF66_LISMH Length = 289 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 94/304 (30%), Positives = 146/304 (48%), Gaps = 21/304 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +T + E+ G L L E F + E + Q VL+N K D + G Sbjct: 2 THVTLPILEDWEGLSLTTILQEKF-HLGKKARHEIRMSQNVLLNNKPLDDWNTPLFVGAS 60 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 +++ + + + + L+I+YED+ ++++NKP D+ H T NA+ +Y Sbjct: 61 LSLPVFLHD--KIPTYEYDLEIIYEDDFLLVVNKPVDMKTHANDSYETDTCANAVQYYLE 118 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GG 183 A VHRLD+ T+GL++ AK A L ++ R I R Y A G Sbjct: 119 KTGQDANALAVHRLDQTTSGLVLFAKNKLAIAGLSWQMENRAIHRTYLAAVDGTWGLVMQ 178 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMA 241 T+++PI + + P G+PAVTH +++E+ + + + ++ETGRTHQIRVH++ Sbjct: 179 TINKPIGEDRHHGSRRQISPYGQPAVTHVKVLENDNEKNTSLVECQIETGRTHQIRVHLS 238 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 I HP++GD +YGG PR +R LHA L L HP G EM + AP Sbjct: 239 GIGHPIIGDTLYGGSPRA---------------NRIMLHAEKLHLNHPFKGKEMNFSAPA 283 Query: 302 PQDM 305 D Sbjct: 284 GDDW 287 >UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38VN9_LACSS Length = 306 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 141/312 (45%), Gaps = 24/312 (7%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEW-ILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE 72 + G L L + SRS++ + ++LVNG+ +++ + V + E Sbjct: 9 DSEGCILRNFLRRH--EISRSQLSKIKFSGGQILVNGQEAH-TNIRLVQNDVVTVYLAPE 65 Query: 73 EEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-PPIADVP 130 P L I YED+ +I++KP + P +P+ T+ N + Y A+ Sbjct: 66 VAVEHVIPVKGDLKIAYEDDHFLIVDKPAFVASLPAPNHPNNTMANFVKQYLIDEQAESL 125 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH----MTAGGTVD 186 +V RLD+DT+GLM+ K A + L LQ +E+ + Y A+A G + +D Sbjct: 126 AVHVVTRLDRDTSGLMMFTKHGFAHSLLDRQLQSKELQKTYIAIASGDMREDLPQHAWID 185 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI R V GK ++T Y H T ++L+L TGRTHQIRVH A + H Sbjct: 186 RPIKRSEEFYMRRVVGEGGKRSLTEYWQAAHGDGATLVKLKLLTGRTHQIRVHFASLGHS 245 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+GD +YG + RQALH L YHP + +P+P D Sbjct: 246 LIGDNLYG--------------ESNDLLPRQALHCRQLTFYHPFEERTITVKSPVPADFS 291 Query: 307 ELIEVMRADFEE 318 ++ + DF+E Sbjct: 292 AVLAQRQFDFDE 303 >UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bifidobacteriaceae RepID=B7GQ28_BIFLI Length = 320 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 156/318 (49%), Gaps = 17/318 (5%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 + +G+R D A+A+M SRS+ + + + V G+ + + GE V + Sbjct: 8 PDALVGKRFDVAVAKML-GISRSKAADLVDSGQARVLGREVARSST-LQAGETVEFDL-A 64 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH---YYPPIAD 128 EE+A EP + +VYED+D+I+++KP + H G TVL +L + Sbjct: 65 EEQAGPEPIATDMAVVYEDDDVIVVDKPVGVAAHASVGWTGPTVLGSLRDRGVHIASYGA 124 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDE 187 R GIV RLD T+GLM+V K+ A T + E+ + Y A+ G + T++ Sbjct: 125 AGREGIVSRLDVGTSGLMLVCKSDLAYTEMRRQFAEHEVKKTYHALVQGGLKENKATIEA 184 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR-VHTRLRLRLETGRTHQIRVHMAHITHP 246 PI R V P GKPAVTH+ ++E F T + + LETGRTHQIRVH + I HP Sbjct: 185 PIGRAKVSDFRFCVTPAGKPAVTHWDVLERFGHEATLVSVNLETGRTHQIRVHFSSIGHP 244 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L GDP+YG P +S DRQ LHA L HP + + + P D+ Sbjct: 245 LCGDPMYGANP---------VLSEALGLDRQWLHAMKLEFRHPRTRVWTTVRSQYPADLA 295 Query: 307 ELIEVMRADFEEHKDEVD 324 ++ MRA E + + Sbjct: 296 AALDAMRARHIEPAEPAE 313 >UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PT91_9SPIO Length = 326 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 153/331 (46%), Gaps = 39/331 (11%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V + RLD + + P+ +RSR+K + V +NG+ K V G+++ Sbjct: 5 FEFKVPDGTGKLRLDAFCSSVLPNMTRSRLKTGMQS--VELNGRQA-KLSSSVQAGDRIK 61 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---- 122 + P+ IPL I+YED D+I +NK +V HP AGN GT++ AL +Y Sbjct: 62 LMWNNPSPDFLIPEHIPLQILYEDNDVIAVNKRVGMVTHPAAGNWTGTLVQALAYYRLHT 121 Query: 123 ----------------YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166 D+ RAGIVHRLDKDT+G+++ A++ A+ L + + R Sbjct: 122 SPIHDKFAGLLEAEQGRGNFEDLLRAGIVHRLDKDTSGVLITARSAAAEAFLKDEFKMRR 181 Query: 167 ITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHT 222 + Y A+ G G ++ + R R GK A + Y+++ + + Sbjct: 182 TEKYYAAILNGVPEKRTGVIETSVFRDEHSRIRFTASADLAKGKYARSRYKVLRVYGRYA 241 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT 282 + +++TGRTHQIR+H I P+VGDP+YG + K LHA Sbjct: 242 LVLFKIDTGRTHQIRLHARFIGCPIVGDPLYGKKEAEWKPYG------------MMLHAY 289 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 L + P + + + AP+P+ ++ ++R Sbjct: 290 RLCVALPSTREKTVFTAPLPRRFQTVLHLLR 320 >UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospiraceae RepID=Q0A8Q9_ALHEH Length = 327 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 95/312 (30%), Positives = 142/312 (45%), Gaps = 21/312 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA- 69 + GQR+D L RS I + +V V+GK KP ++ GE V I Sbjct: 20 IGPEDAGQRVDNFLMRQLKGVPRSLIYRLLRSGQVRVDGKR-TKPPRRLATGETVRIPPV 78 Query: 70 ------EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 E AR + + + I+YED+ +++I+KP L VH G+G G ++ L Sbjct: 79 QTRAPQEATPPARLQGE-LAQRILYEDDRLLVIDKPSGLAVHGGSGLAWG-LIEVLRQAR 136 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 P P +VHRLD+ T+G ++VAK A L E L+ + + Y A+ G + G Sbjct: 137 PS---APFLELVHRLDRATSGCLMVAKRRSALRELHEQLRTGAVHKRYLALLTGALGRGP 193 Query: 184 T-VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 V+ P+ R + V GK A T +R + T + TGRTHQIRVH AH Sbjct: 194 IPVEAPLERRSGPAGGVRVASHGKLARTVFRAVARPGGMTLAEADIATGRTHQIRVHAAH 253 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + P+ GD YG R + R LHA L L P +G + AP+P Sbjct: 254 LGMPIAGDDRYGERAVNRRLRG-------LGLKRLFLHAHRLELSAPGTGQPLSIEAPLP 306 Query: 303 QDMVELIEVMRA 314 ++ ++ ++A Sbjct: 307 DELAAVVAQLQA 318 >UniRef50_B6WA53 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6WA53_9FIRM Length = 299 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 166/300 (55%), Gaps = 20/300 (6%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD+ L+++F + R +IK++I ++++ V KP K++ +++ I+ ++ E A+ E Sbjct: 10 RLDKYLSDIFEEIPREKIKDFIKEKKIKV-NNKKIKPSYKLILEDEIEISDDLFERAKIE 68 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-----PIADVPRAG 133 + + L IVYE++D II+K +++VHP GT++N LL+++ I R G Sbjct: 69 AEKMDLKIVYENKDYAIIDKDENVIVHPAGSIVSGTLVNGLLYHFGYNNLSHIGGDDRPG 128 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRH 192 IVHRLDKDTTGLMV+AK+ + L + R+I +EY A+ G G + + R Sbjct: 129 IVHRLDKDTTGLMVIAKSNSSYKFLKNLFETRKIDKEYLAICNGIFKKKSGEIHTFMDRD 188 Query: 193 PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 P R MAV G+ A++ Y ++ ++ +++++ TGRTHQIRVHM HI HPL+GDPV Sbjct: 189 PNNRRKMAVRNSGRDAISKYEVLSENDGYSLVKIKILTGRTHQIRVHMTHINHPLLGDPV 248 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YG + D Q LH L G+ E+ A + +D + +V+ Sbjct: 249 YGN------------VKHKFNLDHQLLHCHKLGFTD-KDGVYREFEADVHEDFKKYQKVL 295 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 83/343 (24%), Positives = 151/343 (44%), Gaps = 47/343 (13%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV E+ GQRLD L ++ + I V +N + ++ G+ V + Sbjct: 31 VTVDEDYAGQRLDNFLIRHLKGVPKTHVYRIIRSGEVRINKGRA-QADTRLEAGDIVRLP 89 Query: 69 A-----EIEEEARFEPQDI----------------PLDIVYEDEDIIIINKPRDLVVHPG 107 +++A+ +++ +++ED+ ++ I+KP + VH G Sbjct: 90 PVRTSERADQKAQAMAEEVARHGASSTVGGYAPSREFPVLFEDDFLLAIDKPAGVAVHGG 149 Query: 108 AGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 167 +G G V+ L P + +VHRLD++T+G++++AK A L E + RE Sbjct: 150 SGVSFG-VIEQLRMARPQADFLE---LVHRLDRETSGILLIAKRRMALKLLQEQFRERET 205 Query: 168 TREYEAVAIGHMTA-GGTVDEPISRH--------PTKRTHMA--VHPMGKPAVTHYRIME 216 + Y A+ G+ A +D+ + ++ +R + HP G +VT ++ Sbjct: 206 DKVYLALVSGNWPANHRVIDKALHKYLLPGGAGEGERRVKVVPNDHPDGMRSVTLVKVKS 265 Query: 217 HFRV--------HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFI 268 F T L + ++TGRTHQIRVH+A+ HP+ GD YG + + + Sbjct: 266 AFAALPAAPGTPFTLLEVTIKTGRTHQIRVHLANEGHPIAGDDKYGDFE--LNKSLQKSV 323 Query: 269 STLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 + R LHA L+ HP + + P+P ++ + + V Sbjct: 324 AGGAPLKRMFLHAWSLKFNHPKTRKTIHLETPLPDELQQFLSV 366 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 91/310 (29%), Positives = 149/310 (48%), Gaps = 21/310 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V N + + + + SR + + + + +NGK G+ + Sbjct: 21 IKYVVEHNFENRSIKSIIKREYSISSR-FLSKLKQEDLIRLNGKPAKNWFTP-KAGDVIE 78 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E I ++ VYEDE +++I+KP +VVHP G + T+ +AL+HY + Sbjct: 79 LVMPKESSYFTPYSGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTV 138 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTV 185 + + ++RLD DTTGL+++AK Q +V ++R + + Y AV G G + Sbjct: 139 GEEFKIRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGII 198 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTHQIRVHMAHI 243 D PI + V GKP++T Y+++ + L +RL TGRTHQIRVH+ HI Sbjct: 199 DAPI-KAVEGEPRRQVMEGGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQIRVHLKHI 257 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GD YGG+ DRQ LH+ LR HP+S +E A +P Sbjct: 258 GCPILGDEFYGGKESA---------------DRQLLHSRYLRFTHPVSKKIVELTANLPD 302 Query: 304 DMVELIEVMR 313 D+ ++ M+ Sbjct: 303 DIASILTHMQ 312 >UniRef50_Q4A7R4 Pseudouridine synthase n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7R4_MYCH7 Length = 304 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 169/307 (55%), Gaps = 26/307 (8%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI-NAEIE 72 +Q R+D L + SR ++ IL+++VL+N + K + V G+++ I N Sbjct: 12 DQEDIRID-ILVAKLANLSRKVAQDLILEKKVLINNNLVLKKNQIVKTGQKIKIFNDYKR 70 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA--DVP 130 + + EP +I +I+++D+++I+INKP++LVVHPG GN T++N L+ ++ + D Sbjct: 71 PKPQLEPAEIDFEIIFQDQNMILINKPKNLVVHPGVGNWKNTLVNGLISHFDSLEQLDHI 130 Query: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDEPI 189 R GIVHRLDKDTTGL++VAK A + V L R+I R Y+A+ IG + ++ PI Sbjct: 131 RPGIVHRLDKDTTGLLLVAKNAKAHSFFVNELANRQIKRFYKAIVIGKVLHKFMKINLPI 190 Query: 190 SRHPTKRTHMAVH-PMGKPAVTHYRIMEHFR----VHTRLRLRLETGRTHQIRVHMAHIT 244 R + KPA+T+ +++HF + ++ +LETGRTHQIR+H+AHI Sbjct: 191 GRDLKNPLKKTISFFNSKPAITNVELIKHFNYQNQDFSLVKCQLETGRTHQIRLHLAHIG 250 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 +P+ GDP+YG + Q LHA L ++G+ E+ A +P++ Sbjct: 251 YPIYGDPIYGKKIDELG---------------QRLHAYKLVFKD-LNGLSREFQADLPEE 294 Query: 305 MVELIEV 311 E Sbjct: 295 FNIAFEQ 301 >UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3I7_9FIRM Length = 294 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 20/283 (7%) Query: 27 MFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 86 S S + +NG + + G+ +A + I + P+ +PL I Sbjct: 22 HVHGISGSLWRRIKHHGAFTLNGIPAVAARTMLKDGDWIAYDLPIV--SSVIPESLPLSI 79 Query: 87 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLM 146 +YED+D+++++KP +VHP GT+ NA+ YY HRLD++T+GL+ Sbjct: 80 IYEDDDLLVLDKPAGQLVHPTTKETHGTIANAVRGYYAACGVHLDFHPCHRLDRNTSGLL 139 Query: 147 VVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMG 205 ++AK Q ++ + + REY A+ G + G +D PI+R V G Sbjct: 140 LIAKHPEVQYQIAQQ---NTLRREYLALIAGSLTPPEGCIDVPIARALPSIILRCVSTEG 196 Query: 206 KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASE 265 K A THY ++ ++ LRL+L+TGRTHQIRVH+AH+ HPL+GD +YGG Sbjct: 197 KSACTHYVTVQTDGRYSLLRLQLDTGRTHQIRVHLAHLGHPLLGDDLYGG---------- 246 Query: 266 AFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 T + R ALH+ L L HP + + A +P DM + Sbjct: 247 ----TRAEIARHALHSAHLTLVHPRTKKMLALSALLPADMARI 285 >UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HL94_FERNB Length = 317 Score = 296 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 38/320 (11%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV+E+ R+D+ L +M + S I +++ +V +NGK P K+ G+ + + Sbjct: 19 WTVNESNYFSRVDKFLRKMLKNVPLSAIYKFLRTGKVKINGKKVKDPSTKLNIGDVIELI 78 Query: 69 AEI-----EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 E E +P + LDI+YEDE II INKP + VHPG +++ L+HY Sbjct: 79 EESLDNYSREYLELKPVKMDLDIIYEDELIIAINKPAGVSVHPGKNVNKPSIIEGLIHYG 138 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 +VHRLDK+T+G+++VAK L E + R + + Y A+ G + Sbjct: 139 KENG--FEPFLVHRLDKETSGVLIVAKDRSVARELSEIISSRNVEKIYNALVFGKVQK-V 195 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR--------VHTRLRLRLETGRTHQ 235 T++ PI G+ AV+H +E+FR + L + +ETGR HQ Sbjct: 196 TINTPI--------------DGQDAVSHIIPIEYFRVKLNGISVELSFLEVEIETGRKHQ 241 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IR H++ I P+VGD YG + S R LH ++ +G Sbjct: 242 IRKHLSSINCPIVGDKDYGNFRLNRE------FSKNFGLKRHFLHCKQMKFV--FNGRNY 293 Query: 296 EWHAPIPQDMVELIEVMRAD 315 A +P+D+ +I+ + A+ Sbjct: 294 NILAQLPKDLTTVIKYLNAE 313 >UniRef50_P75485 Uncharacterized RNA pseudouridine synthase MG209 homolog n=2 Tax=Mycoplasma RepID=Y292_MYCPN Length = 309 Score = 296 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 153/316 (48%), Gaps = 28/316 (8%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++ T +V+ QRLD LA + + SR ++ + I+D V VNGK K V ++ Sbjct: 1 MEQTFSVT---TAQRLDTFLATLL-NLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDR 56 Query: 65 VAINAEIE----EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 V +N E +P D PLDI+YEDE I+++NKP L+ HP + N ++L A L Sbjct: 57 VHVNWSEELFEKVPVEVQPYDFPLDILYEDEQIMVVNKPNGLISHPTSFNESESLLGAAL 116 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + + +VHRLD+DT+G++++AK + L + LQ+R + R Y A+ + Sbjct: 117 FHC----NHQPVFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLD 172 Query: 181 A-GGTVDEPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + GT+ P+ R + V K A T + ++ ++ L TGRTHQI Sbjct: 173 SLSGTISAPLERVGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQI 232 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH+ I HP+ DP+YG + Q LHA + HP EM Sbjct: 233 RVHLQFIKHPVYNDPLYGLKSEQATEYG------------QYLHAQQISFIHPTLNKEMG 280 Query: 297 WHAPIPQDMVELIEVM 312 + A + + + ++ + Sbjct: 281 FEAQLDKTFSDKLDNL 296 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 453 e-126 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 425 e-118 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 415 e-115 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 414 e-114 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 410 e-113 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 409 e-113 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 409 e-113 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 409 e-113 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 407 e-112 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 406 e-112 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 404 e-111 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 402 e-111 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 402 e-110 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 402 e-110 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 401 e-110 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 401 e-110 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 401 e-110 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 400 e-110 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 400 e-110 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 400 e-110 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 400 e-110 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 399 e-110 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 399 e-110 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 399 e-110 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 396 e-109 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 395 e-109 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 395 e-108 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 394 e-108 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 393 e-108 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 393 e-108 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 393 e-108 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 393 e-108 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 393 e-108 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 392 e-108 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 392 e-107 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 392 e-107 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 392 e-107 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 391 e-107 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 390 e-107 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 389 e-107 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 389 e-107 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 388 e-106 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 387 e-106 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 387 e-106 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 387 e-106 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 386 e-106 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 386 e-106 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 386 e-106 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 385 e-106 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 384 e-105 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 384 e-105 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 383 e-105 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 383 e-105 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 382 e-105 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 382 e-105 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 381 e-104 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 380 e-104 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 380 e-104 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 380 e-104 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 379 e-104 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 379 e-104 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 379 e-104 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 378 e-103 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 378 e-103 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 378 e-103 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 377 e-103 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 377 e-103 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 377 e-103 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 376 e-103 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 376 e-103 UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enteri... 376 e-103 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 375 e-103 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 375 e-102 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 375 e-102 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 375 e-102 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 374 e-102 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 374 e-102 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 373 e-102 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 373 e-102 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 373 e-102 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 373 e-102 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 372 e-102 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 372 e-102 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 372 e-101 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 371 e-101 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 371 e-101 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 370 e-101 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 370 e-101 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 370 e-101 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 369 e-101 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 367 e-100 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 366 e-100 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 366 e-100 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 366 e-100 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 366 e-100 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 366 e-100 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 366 e-100 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 365 e-100 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 365 1e-99 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 365 2e-99 UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Ta... 364 2e-99 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 364 2e-99 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 364 2e-99 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 364 3e-99 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 363 3e-99 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 363 5e-99 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 363 6e-99 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 362 7e-99 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 362 7e-99 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 361 1e-98 UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Ta... 361 2e-98 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 361 2e-98 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 360 3e-98 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 360 4e-98 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 360 5e-98 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 359 7e-98 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 358 2e-97 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 357 3e-97 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 357 4e-97 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 357 4e-97 UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D... 356 7e-97 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 355 9e-97 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 355 1e-96 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 355 1e-96 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 354 2e-96 UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6... 354 2e-96 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 353 5e-96 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 353 7e-96 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 352 1e-95 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 352 1e-95 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 352 1e-95 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 351 2e-95 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 351 2e-95 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 351 3e-95 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 350 3e-95 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 350 4e-95 UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae ... 350 4e-95 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 350 6e-95 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 350 6e-95 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 348 1e-94 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 348 1e-94 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 348 2e-94 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 348 2e-94 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 347 3e-94 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 346 4e-94 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 346 6e-94 UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 344 3e-93 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 343 4e-93 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 341 2e-92 UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 341 2e-92 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 341 2e-92 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 341 2e-92 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 341 2e-92 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 340 4e-92 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 339 7e-92 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 338 1e-91 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 338 1e-91 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 338 2e-91 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 338 2e-91 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 338 2e-91 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 337 3e-91 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 337 3e-91 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 337 3e-91 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 336 5e-91 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 336 5e-91 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 336 6e-91 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 336 7e-91 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 335 2e-90 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 333 4e-90 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 333 5e-90 UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 333 5e-90 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 333 6e-90 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 333 8e-90 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 332 9e-90 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 332 1e-89 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 331 2e-89 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 331 2e-89 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 331 3e-89 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 331 3e-89 UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter... 329 7e-89 UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 329 8e-89 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 329 1e-88 UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veil... 329 1e-88 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 328 2e-88 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 328 2e-88 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 327 3e-88 UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D... 327 4e-88 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 326 5e-88 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 326 6e-88 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 326 6e-88 UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae R... 326 9e-88 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 325 1e-87 UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 T... 324 2e-87 UniRef50_B6BNM7 Ribosomal large subunit pseudouridine synthase, ... 323 4e-87 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 323 4e-87 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 323 4e-87 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 323 5e-87 UniRef50_Q3AD19 Ribosomal large subunit pseudouridine synthase, ... 323 6e-87 UniRef50_Q6KHW4 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 323 7e-87 UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=W... 322 9e-87 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 322 1e-86 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 322 1e-86 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 322 1e-86 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 321 2e-86 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 321 2e-86 UniRef50_Q30SG9 Pseudouridine synthase n=5 Tax=Epsilonproteobact... 321 3e-86 UniRef50_C9KQC1 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 320 4e-86 UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium t... 320 4e-86 UniRef50_A6GN92 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 320 5e-86 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 319 6e-86 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 319 7e-86 UniRef50_B0TDX6 Pseudouridine synthase, rlua family n=1 Tax=Heli... 319 9e-86 UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella el... 319 1e-85 UniRef50_B9L8H5 Pseudouridine synthase n=1 Tax=Nautilia profundi... 317 3e-85 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 317 4e-85 UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sak... 316 5e-85 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 316 6e-85 UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjun... 315 1e-84 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 315 1e-84 UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID... 315 1e-84 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 315 1e-84 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 315 2e-84 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 314 2e-84 UniRef50_C0X7U3 Pseudouridine synthase n=21 Tax=Enterococcus fae... 314 2e-84 UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus Rep... 314 2e-84 UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 314 4e-84 UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus Rep... 313 4e-84 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 313 4e-84 UniRef50_Q8D220 Pseudouridine synthase n=1 Tax=Wigglesworthia gl... 313 5e-84 UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterale... 313 5e-84 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 313 6e-84 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 313 6e-84 UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 313 8e-84 UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D... 312 8e-84 UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 312 1e-83 UniRef50_B0SGK3 Pseudouridylate synthase, 23S RNA-specific n=2 T... 312 1e-83 UniRef50_B1YJB1 Pseudouridine synthase n=1 Tax=Exiguobacterium s... 311 2e-83 UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostri... 311 2e-83 UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cyst... 310 4e-83 UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Meth... 310 5e-83 UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 309 6e-83 UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus Rep... 309 8e-83 UniRef50_D2RJW8 Pseudouridine synthase, RluA family n=2 Tax=Acid... 309 1e-82 UniRef50_C4ZAQ6 Pseudouridine synthase n=15 Tax=Clostridiales Re... 308 2e-82 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 308 2e-82 UniRef50_Q03PR9 Pseudouridylate synthase, 23S RNA-specific n=1 T... 308 2e-82 UniRef50_Q2GEQ1 Ribosomal large subunit pseudouridine synthases,... 306 5e-82 UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lac... 306 5e-82 UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID... 306 5e-82 UniRef50_C6VRD0 Pseudouridylate synthase n=4 Tax=Lactobacillus R... 306 6e-82 Sequences not found previously or not previously below threshold: >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 325/326 (99%), Positives = 326/326 (100%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL Sbjct: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDII+INKPRDLVVHPGAGNPDGTVLNALL Sbjct: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALL 120 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM Sbjct: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP Sbjct: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 Query: 301 IPQDMVELIEVMRADFEEHKDEVDWL 326 IPQDMVELIEVMRADFEEHKDEVDWL Sbjct: 301 IPQDMVELIEVMRADFEEHKDEVDWL 326 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 425 bits (1095), Expect = e-118, Method: Composition-based stats. Identities = 133/316 (42%), Positives = 185/316 (58%), Gaps = 19/316 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 ++ V+ G RLD+ LAE + SRS IK+ I + +V VNG K KV GGE Sbjct: 3 TEIKVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLH-RKASYKVRGGE 61 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 +A+ E +P++IPLDIVYEDED++++NK +VVHP GN DGT++NALL++ Sbjct: 62 IIAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALLYHC 121 Query: 124 PP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 I V R GIVHRLDKDT+GL+VVAK A L E ++ ++ REY + G++ Sbjct: 122 QNLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLK 181 Query: 181 -AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRV 238 G +D PI RHP R MAV GK A T Y+++E F + T ++ +L TGRTHQIRV Sbjct: 182 NKEGIIDLPIGRHPRDRQKMAVVSNGKTAQTVYKVLEEFNKGFTLIQAKLLTGRTHQIRV 241 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H +++ HP++GDP YG + P RQ LHA L HP SG +E+ Sbjct: 242 HFSYLGHPVLGDPKYGHQNNP------------FGVKRQMLHAIKLSFIHPRSGELLEFT 289 Query: 299 APIPQDMVELIEVMRA 314 AP+P+D ++ +R Sbjct: 290 APLPEDFQRVLAKLRG 305 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 415 bits (1069), Expect = e-115, Method: Composition-based stats. Identities = 154/325 (47%), Positives = 202/325 (62%), Gaps = 8/325 (2%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 ++ TV G RLD LA++ PDYSRSR+ WI + V+VN K +PK+K++GGEQ+ Sbjct: 27 RIGLTVPLELAGGRLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDKP-SQPKDKMIGGEQI 85 Query: 66 AINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + EE F P+ + LDIVYED+ +I++NKP LVVHP AGN GT+LN LL + P Sbjct: 86 RVTVRPSEENLAFVPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCP 145 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 ++ +PRAGIVHRLDK+T+GLMVVAKT+PAQ LV LQ R + R Y AVA G + G Sbjct: 146 ELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFDGK 205 Query: 185 VDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ I R P R MAV GKPAVTH +++E + H+ + LETGRTHQIRVHM Sbjct: 206 IETQIGRDPHNRLKMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETGRTHQIRVHMREA 265 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL GDPVYG P + + +L RQALHA L HP SG + + APIP Sbjct: 266 NHPLAGDPVYGNPRHPCGDTVKEAVKSLGA--RQALHAYRLSFTHPESGETVSFEAPIPD 323 Query: 304 DMVELIEVMRAD---FEEHKDEVDW 325 D+ L+ V+R + +E +W Sbjct: 324 DIYHLLSVLRLEAGLDSSLSNEEEW 348 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 126/320 (39%), Positives = 176/320 (55%), Gaps = 22/320 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M R+ V E G RLD+ L+ D SRSR ++ I ++ V ++ K KV Sbjct: 1 METRI---LIVEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPV-KNSYKVK 56 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+++ + EE +PQ++ L++VYED D+I+INKP+ LVVHPG GNPD T++N LL Sbjct: 57 AGDEIEVTLPEEEALEAQPQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNGLL 116 Query: 121 HYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + I V R GIVHR+DKDT+GL+V K A L + L + R+Y A+ G Sbjct: 117 WHCHDLSGINGVLRPGIVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHG 176 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 + GT+D PI R R MAV +PA+TH++++E F +T + RLETGRTHQ Sbjct: 177 VINHEYGTIDAPIGRDEKDRQKMAVTEKNSRPAITHFKVVERFDNYTLVSCRLETGRTHQ 236 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVHM +I P+VGDP Y R P Q LHA L HP +G M Sbjct: 237 IRVHMQYIGFPIVGDPKYSLRKTLPTQG-------------QMLHAYQLSFTHPSTGERM 283 Query: 296 EWHAPIPQDMVELIEVMRAD 315 + AP+P + L+ +R + Sbjct: 284 TFEAPLPPEFEALLTQLRQE 303 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 410 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 178/316 (56%), Gaps = 15/316 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V Q +R+D+ LA PD SR++++ I VL +G + + V G + Sbjct: 14 ERVVVVPPTQTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDG-RSPRASQPVRPGAVI 72 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + IPLD+VYED DI +INKP +VVHP G+P GT++NALL YP Sbjct: 73 QLTIPPPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPD 132 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 I R GIVHRLD+DT+GL+V+A+ A LV+ Q R + + Y+A+ IG G Sbjct: 133 LAIGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPPETG 192 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 T+D PI R P R MAV P G+PA THYR+++ F ++ L ++LETGRTHQIRVH+ H+ Sbjct: 193 TIDAPIGRDPRDRLRMAVVPDGRPARTHYRLLDTFGDYSLLEVQLETGRTHQIRVHLRHL 252 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 +P+VGDPVYG R RQ LHA L L HP SG E+ AP+P Sbjct: 253 GYPIVGDPVYGPRRSHLH------------LSRQFLHAAYLGLVHPRSGRWQEFTAPLPA 300 Query: 304 DMVELIEVMRADFEEH 319 D+ ++ ++ H Sbjct: 301 DLQIVLRQLQDRASYH 316 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 153/313 (48%), Positives = 197/313 (62%), Gaps = 7/313 (2%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + TV +N G RLDQALA++ P +SRSR++ WI + V V+ K+KV G Sbjct: 27 ENENTIELTVPDNLAGLRLDQALAQLLPQWSRSRLQGWIEQKCVSVDSAAAT-CKQKVWG 85 Query: 62 GEQVAINAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE + + A E + + + IPL I++ED+ +III+KP LVVHPG GN GT+LNALL Sbjct: 86 GESIRVIAGQTENDQSHQAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALL 145 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 ++ P ++ VPRAGIVHRLDKDTTGL+VVAKT+ AQ L LQ+R + R Y A+ +G + Sbjct: 146 NHAPQLSQVPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLE 205 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G VD PI RHP RT MAV GKPA THYR++E F T L LETGRTHQIRVH+ Sbjct: 206 KDGVVDAPIGRHPIHRTRMAVVQNGKPARTHYRVLEKFTASTLLHCSLETGRTHQIRVHL 265 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 I HPL GDPVYG + + + RQALHA L L HP SG + W +P Sbjct: 266 LSIGHPLAGDPVYG-----RTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESP 320 Query: 301 IPQDMVELIEVMR 313 +P DM L++ +R Sbjct: 321 LPDDMAALLQAIR 333 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 136/322 (42%), Positives = 188/322 (58%), Gaps = 20/322 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + + +Q G+RLD+ L M P SR+ +++ I + + LV+G K K+ Sbjct: 1 MSDSTK---VYTADQDGERLDRFLTRMEPTLSRAHVQKVIAEGQALVSG-RVRKANYKLQ 56 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE+V + + P+DIPLDI+YED DII+INK R +VVHP G GT++NALL Sbjct: 57 AGEKVTFHLPEAKPVEILPEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALL 116 Query: 121 HYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 ++ I R GIVHRLDKDT+G+MV AK A L E ++ + R Y A+ G Sbjct: 117 YHCKDLSGINGEIRPGIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCG 176 Query: 178 HMTAG-GTVDEPISRHPTKRTHMA-VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 ++ G + I RHPT R MA VH GKPAVTH+R++E F +T + RLETGRTHQ Sbjct: 177 NIREEAGVIKGDIGRHPTDRKKMAIVHEHGKPAVTHFRVLERFGAYTLVECRLETGRTHQ 236 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVHMA I HP++GDP YG R P QALH+ L L HP + M Sbjct: 237 IRVHMASIGHPVLGDPKYGPRKACP-----------FAIKGQALHSLQLTLTHPRTREVM 285 Query: 296 EWHAPIPQDMVELIEVMRADFE 317 + AP+P+DM ++++ +RA F+ Sbjct: 286 TFTAPLPEDMEKILKALRAKFQ 307 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 129/314 (41%), Positives = 179/314 (57%), Gaps = 5/314 (1%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V+ + G RLD LA +SR+R++ I RV ++GK + +K+ G+ V Sbjct: 8 REYRVTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQKLRTGDIVM 67 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 + PQDIPL I+YED D+++++KP LVVHP AG+ GT++NALL + Sbjct: 68 LEEPPATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTLVNALLFHCRDL 127 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 I V R GIVHRLDKDT+GL+VVAKT A L ++ ++ + Y+A+ G Sbjct: 128 AGIGGVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYGDPREKT 187 Query: 183 GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 G +D P+ RHP +R M+ GK A T +RI E F V T L + + TGRTHQIRVH+A Sbjct: 188 GQIDLPVGRHPVERKKMSTKSRRGKEAATRWRIAERFGVATLLNVDIVTGRTHQIRVHLA 247 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 I HP+VGD VYG R A L++ RQALHA L HP++ +E+HAP+ Sbjct: 248 AIGHPVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKILEFHAPL 307 Query: 302 PQDMVELIEVMRAD 315 P DM +L +R Sbjct: 308 PADMEDLCAFLRKH 321 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 407 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 161/314 (51%), Positives = 220/314 (70%), Gaps = 1/314 (0%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A R+ L + E+ LGQR+DQ A ++ ++SR ++K+W+ + +LVNG + KPK + G Sbjct: 34 ATRLSLQVQLDESYLGQRIDQVAAMVWSEFSREKLKQWMKEGHLLVNGNIV-KPKYRCEG 92 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 E + +N E+E + +P++IPLDIVYEDEDI++INKP +VVHPGAGN T++NALL+ Sbjct: 93 NETLTLNVELEAQTNSQPENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLY 152 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + P A++ RAG+VHR+DKDT+GL+VVAK + AQ L + L + + R Y+ V G++ A Sbjct: 153 HSPKSAELSRAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIA 212 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GGT+DEPI RHP R MA+ P G+ AVTHY + E FR TR++ +LETGRTHQIRVH + Sbjct: 213 GGTIDEPIKRHPVDRVKMAILPGGRDAVTHYNVKERFRDFTRVQAQLETGRTHQIRVHFS 272 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 +I H LVGD VY R R P GASE I TLR F RQALHA L L HP +G EM + AP Sbjct: 273 YIGHGLVGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPW 332 Query: 302 PQDMVELIEVMRAD 315 P+D +L+ V+R + Sbjct: 333 PEDFTQLVNVLRTE 346 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 175/324 (54%), Gaps = 19/324 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + TV+ + R+D L + SRS + WI + V ++G K ++ G+ + Sbjct: 36 VRLTVTPAEADSRVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPL-KANYRLRPGDVIE 94 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 + E P+DIPL+I+++D DI +INKP LVVHP G+ GT++NALL++ Sbjct: 95 VAPPAPEAVEILPEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWSGTLVNALLYHIKDL 154 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 I R GIVHR+DKDT+GL+VVAK A L E ++ + REY AV G + Sbjct: 155 SGINGELRPGIVHRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAET 214 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 240 G V+ PI R P R MAV GK A+TH+R++ + + + L RLETGRTHQIRVH+ Sbjct: 215 GRVEAPIGRDPKDRQRMAVIAGGKSAITHFRVLARYPEQGFSLLHCRLETGRTHQIRVHL 274 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 AHI HP+ GDP YG R QALHA L HP SG M + A Sbjct: 275 AHIGHPVAGDPKYGPRK------------AAFGLTGQALHAWKLEFVHPRSGEPMRFQAD 322 Query: 301 IPQDMVELIEVMRADFEEHKDEVD 324 P+ V++++ ++ +D+ + Sbjct: 323 PPEPFVQVLQALQMTPTNQRDQAN 346 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 128/316 (40%), Positives = 181/316 (57%), Gaps = 23/316 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + +V G+R+D+ L+ +YSRS +K I + +V V GK K KV G ++ Sbjct: 23 IELSVVSEDSGERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPV-KSSFKVTEGINIS 81 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 I+ +EA P++IPLDI+YEDED+I+INKP+ +VVHP AG+ GT++NAL+++ Sbjct: 82 ISIPPVKEAEIIPENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTLVNALMYHCRDN 141 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 I R GIVHR+D DTTG+++ K + + E L+ I R+Y+A+ G Sbjct: 142 LSGINGELRPGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAIVYGVFKDE 201 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-----RVHTRLRLRLETGRTHQI 236 G ++ I R T R MAV P GKPAVTHYR++ ++ + LETGRTHQI Sbjct: 202 EGRIEGSIGRSKTDRKKMAVIPDGKPAVTHYRVIRNYTSPNGNNFAHIECELETGRTHQI 261 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM I HPL+GD +YG P K D QALHA ML HP +G ME Sbjct: 262 RVHMTSIGHPLLGDEIYGAAKNPFK------------LDGQALHAEMLGFVHPRTGEYME 309 Query: 297 WHAPIPQDMVELIEVM 312 +HAP+P+ +L+ + Sbjct: 310 FHAPLPEYFSKLLTKL 325 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 402 bits (1034), Expect = e-111, Method: Composition-based stats. Identities = 181/309 (58%), Positives = 229/309 (74%), Gaps = 1/309 (0%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 ++ T + GQRLDQALA+ +PDYSRSRI++WI +L++G+V +P+ VLGGE Sbjct: 2 HLEETLLIPPECAGQRLDQALAKCWPDYSRSRIQDWIKSGEILLDGEVA-RPRATVLGGE 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V + AEIEE PQDIPLDI+YED+ II++NK D+VVHP AGNPDGT++NALL + Sbjct: 61 SVELLAEIEEAVAAVPQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHD 120 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 P + VPRAG+VHRLDK T+G+MVVAKT+ A LVE+L R+I REY+ V +GH+ AGG Sbjct: 121 PSLVSVPRAGVVHRLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHVVAGG 180 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 TVD PI RHP R AV GK AVTHYR+++H+ T LR++LETGRTHQIRVHMAHI Sbjct: 181 TVDAPIGRHPRDRQRQAVTATGKRAVTHYRVLQHYGEQTWLRVQLETGRTHQIRVHMAHI 240 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP++GDPVYGGRPR P AS A I LR F+RQALHA L L HP++G +M + AP+P Sbjct: 241 RHPVIGDPVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMRFEAPMPD 300 Query: 304 DMVELIEVM 312 DM ELI ++ Sbjct: 301 DMRELIALL 309 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 16/316 (5%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + ++L +SE + G+RLD+ +A SRS +++ + +LVNG+ C KP ++V Sbjct: 6 REAIRLVLQISEREHGERLDKLIASRVTGMSRSFVQQLMKRGAILVNGEPC-KPAQRVRY 64 Query: 62 GEQVAINAEI-EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+++ + E EP+ +P+ ++YED+DII+ +KP +V HP G+ GT++NAL Sbjct: 65 GDRLEVYLPPVEPPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALK 124 Query: 121 HYYPPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 P + P R GIVHRLDKDT+GL+VVAKT A+ L+E Q R + ++Y A+ G Sbjct: 125 AIRPDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGV 184 Query: 179 M-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + GT+D PISR P +RT MAV G+PA+TH+R++E FR T L + +ETGRTHQIR Sbjct: 185 VEPDSGTIDAPISRDPVERTKMAVVSWGRPAITHFRVLERFRCATLLDVTIETGRTHQIR 244 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH A I HP+VGD YGG RQ LHA LR HP +G +E Sbjct: 245 VHCAFIGHPVVGDSQYGGHR-----------PFCVPVPRQFLHARYLRFVHPTTGQAIEL 293 Query: 298 HAPIPQDMVELIEVMR 313 P+P D+ ++E +R Sbjct: 294 ETPLPYDLRTVLEALR 309 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 177/321 (55%), Gaps = 8/321 (2%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M V + GQRLD + + SR+ I V V+ K KP + Sbjct: 1 MTGDQTYQFKVQNKEQGQRLDAFVPVHCKNLSRNACARLIRQGLVTVD-KSVKKPSYVLK 59 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE V++ E A QD+ L I+YED DI+ +NKP +VVHP G+ T++NALL Sbjct: 60 PGEMVSVTVPEPETADIVAQDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALL 119 Query: 121 HYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + I V R GIVHRLDK+T+G+++ AK A L E L +R + + Y A+A G Sbjct: 120 AHCKDLSGIGGVQRPGIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHG 179 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 + G +D P++RHP+ R M V G+ A++ + + E F T ++++++TGRTH Sbjct: 180 VIKEDTGVIDLPLARHPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIKTGRTH 239 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH+A + HP++GD VYGGR + + + +RQ LHA ++ HP++G + Sbjct: 240 QIRVHLAALHHPVIGDTVYGGRKKRGRLPASVLGKAPPP-ERQMLHAHIVSFTHPVTGEK 298 Query: 295 MEWHAPIPQDMVELIEVMRAD 315 + AP+PQDM +L+E +R Sbjct: 299 LTLTAPLPQDMAQLLEALRES 319 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 154/317 (48%), Positives = 218/317 (68%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A R++L + G RLDQ LA++FPDYSRS+++ WI V V+G K +EKV Sbjct: 7 ASRIELKKIIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRE 66 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + I A++E R+ PQ IPLD++YEDE +++INKP L+VHPGAG D T++NALLH Sbjct: 67 NQFIEIEAQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLH 126 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 Y P ++ VPRAGI+HRLDKDT+GL+++A+T+ + L+++++ R+I REYEA+ G + + Sbjct: 127 YDPSLSVVPRAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLIS 186 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 G T++ P+ RHP RT MAV G+PA+TH+RI++ +R HT +R++LETGRTHQIRVHMA Sbjct: 187 GRTIEAPVGRHPIHRTRMAVVEFGRPAITHFRIIKRYRAHTHIRVQLETGRTHQIRVHMA 246 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 HI HPL GDPVYG P S+ + L+ RQALH L+ HP+ M HAP+ Sbjct: 247 HIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACHAPL 306 Query: 302 PQDMVELIEVMRADFEE 318 P DM L+E + D+ + Sbjct: 307 PADMAHLLECLEDDYSQ 323 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 186/314 (59%), Gaps = 18/314 (5%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 VS + G+R+D+ L+++ D SRS I++ I + +VLVNG+ + KV G+ + + Sbjct: 8 YEVSSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESVKR-SFKVNRGDHIRLI 66 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPP 125 E++ +P ++ LDI+YED+DI+++NK LVVHP GN + T++NAL+ Y Sbjct: 67 IPPPEDSGIKPVEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNALIAYCDNLST 126 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 I+ V R GIVHRLDKDT+G+MV+AK + +LVE ++R+ + Y + G + G Sbjct: 127 ISGVNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLKGELPYKEGK 186 Query: 185 VDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D PI R P R MAV K AVT+++++E FR H+ + + L+TGRTHQIRVH +++ Sbjct: 187 IDAPIGRDPHDRKKMAVTRKNSKKAVTYFKVLEFFRDHSYVEVELKTGRTHQIRVHFSYM 246 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P+VGD +YG + + RQ LHA L YHP + +E+ A +P Sbjct: 247 GFPVVGDSIYGKKRNRLQAT------------RQLLHAYRLGFYHPRNDKWVEYKASLPD 294 Query: 304 DMVELIEVMRADFE 317 D + ++++ F+ Sbjct: 295 DFKKALDILENKFK 308 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 148/312 (47%), Positives = 197/312 (63%), Gaps = 1/312 (0%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V N RLDQ LA +P++SR+R ++ I VL+NG V G+Q+ Sbjct: 10 INFIVDHNNHALRLDQVLARNYPEFSRNRWQDAINAGTVLLNGAAAKSKS-LVCAGDQIT 68 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 E + Q++PL+I+Y D+DII+INKP LVVHP GN D T+LNALL+++P Sbjct: 69 GVLTQEIQTEDSAQNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQT 128 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 +PR+GIVHRLDKDT+G MV+A + A T LV LQ R + R Y A+ G++TAG T+D Sbjct: 129 KHLPRSGIVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITAGDTID 188 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI RH R MAV P GKPA+THYRI E ++ T LR++LETGRTHQIRVH++H HP Sbjct: 189 LPIGRHAKDRLKMAVRPDGKPAITHYRIEERWQTLTLLRVQLETGRTHQIRVHLSHHRHP 248 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 LVGD +YG RP +E L +F RQALHA L L+HP + M + AP+P DM Sbjct: 249 LVGDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMT 308 Query: 307 ELIEVMRADFEE 318 +L ++RA + Sbjct: 309 QLFTILRAQNPQ 320 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 131/321 (40%), Positives = 184/321 (57%), Gaps = 8/321 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 T + +RLD+ L E P+ SRS++K+ I D RVL++G KP K+ GGE + Sbjct: 5 FTLCFGRERSPERLDRFLVEQLPELSRSQLKKLIDDGRVLLDGA-AAKPGSKLKGGETLT 63 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 ++ A +DIPL I+YED +I+I+KP +VVHP G+ GT++NALLH+ Sbjct: 64 VDVPDPSPAEAVSEDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDL 123 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 I R GIVHRLDKDT+G+MV KT A L + ITR Y A+ G +T Sbjct: 124 SGIGGELRPGIVHRLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDR 183 Query: 183 GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVH 239 G++D PI RHPT R M+ G+ AVTH+R++ F T + L LETGRTHQIRVH Sbjct: 184 GSIDRPIGRHPTHRKKMSTTCRTGRHAVTHWRVLRRFDDDRLTLVELALETGRTHQIRVH 243 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + HPL+GDPVYGG R + + RQALHA +L HP +G +E+ + Sbjct: 244 FSEQQHPLLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSS 303 Query: 300 PIPQDMVELIEVMRADFEEHK 320 P+P+D+ +I+ + + + Sbjct: 304 PLPEDLRSVIDYLTEKYGQPP 324 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 165/310 (53%), Positives = 216/310 (69%), Gaps = 1/310 (0%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 TV + G+R D LAE+FP++SRSR+ EWI VL+NG + +P++ V GGE V Sbjct: 13 SRQTTVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNGVLV-RPRDPVYGGEVV 71 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + PQDIPLDI+YEDE + +INKP LVVHPGAGNPDGT++NALLH P Sbjct: 72 WLQVMPDIRTDAVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPA 131 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 +A VPRAG+VHRLDKDT+G+MVVA+T+ AQT LVE L R++ R+Y AV + + +GGTV Sbjct: 132 LAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSGGTV 191 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 + I RHP R M V GK AVTHYR+ E FR HT L RL+TGRTHQIRVHMAH+ H Sbjct: 192 NAAIERHPRDRLRMEVSDTGKEAVTHYRLRERFRAHTALECRLDTGRTHQIRVHMAHLRH 251 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD +YGG + PKG ++A ++ LR F RQALHA +L HP+ + + AP+P+D+ Sbjct: 252 PIVGDRLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVAPVPEDL 311 Query: 306 VELIEVMRAD 315 +L+ +R D Sbjct: 312 CQLLAALRED 321 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 162/309 (52%), Positives = 206/309 (66%), Gaps = 3/309 (0%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + T+S + G RLD AL + P++SRSR++ WI V V+GK K KV GGE+V+ Sbjct: 13 IHLTISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGK-ASTAKTKVWGGEKVS 71 Query: 67 INAE-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ + E F QDIPLDIVYED+ I+++NKP +VVHP AGN DGT+LNALL + P Sbjct: 72 VDVQVKPESRAFIAQDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALLFHAPQ 131 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + DVPRAGIVHRLDK+T+GL+VVAKT+ AQT LV LQ R + REY A+ G + G V Sbjct: 132 LHDVPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQLWRNGVV 191 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D+P+ R P RT MA++ MGKPA+T Y I+E F V T LR LETGRTHQIRVHM H+ Sbjct: 192 DQPLGRDPRSRTKMAINRMGKPAITRYEILERFSVQTYLRCNLETGRTHQIRVHMQHLKA 251 Query: 246 PLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 PLVGDPVYG R P + ++ + +F RQALHA L L HP + MEW + D Sbjct: 252 PLVGDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFMEWQIELADD 311 Query: 305 MVELIEVMR 313 M L+E MR Sbjct: 312 MKVLLEAMR 320 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 133/312 (42%), Positives = 182/312 (58%), Gaps = 12/312 (3%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE 72 + GQRLD+AL FPD +RS ++ WI ++RV+V+ +V P +KV G+ + I Sbjct: 16 ADDAGQRLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHIIIYPSEP 75 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP------- 125 E + P++I L+I++EDE +I++NKP +VVHPGAG GT++NALL++ Sbjct: 76 EPSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCGTPDNPHGG 135 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TA 181 I V R GIVHRLDK+T+G+MV AK A L ++R I R Y A+ G A Sbjct: 136 LSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPA 195 Query: 182 GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G ++ I RHP RT MAV G+ A T Y+++E +R RLE+GRTHQIRVHM Sbjct: 196 QGRIEGAIGRHPIHRTKMAVVEQGGRAAATRYKVLEPLGQFALIRCRLESGRTHQIRVHM 255 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 HI HPLVGDP+YG + + P +F RQALHA L HP +G EM + P Sbjct: 256 THIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHTGEEMSFKRP 315 Query: 301 IPQDMVELIEVM 312 P D +L E + Sbjct: 316 PPADFRQLYETL 327 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 135/322 (41%), Positives = 196/322 (60%), Gaps = 7/322 (2%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 ++ R + G+R+D A+ E F +SR++I++W+ + + VNG KPK VL Sbjct: 6 LSNRFHQNIIMHPKDAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNG-RATKPKHIVL 64 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G E+V IN E+ + +DI L I++ED+DII+I+KP +++VHPGAGNP GTV NALL Sbjct: 65 GDEEVEINIELLPTNEWIAEDINLKIIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALL 124 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 H Y +PRAGIVHRLDKDT+GLMV AK+ A LV+ L R+++R+Y A+ G + Sbjct: 125 HRYKDQDKLPRAGIVHRLDKDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIY 184 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GT+++PI R PT RT MA++ GK A+T+Y +E + T + +LETGRTHQIRVHM Sbjct: 185 QQGTINQPIGRDPTNRTKMAINYRGKEAITYYTPIEVYDGFTLIECQLETGRTHQIRVHM 244 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 I HPLVGD Y + + + RQALHA L HP + +++ + Sbjct: 245 KSIKHPLVGDQTYNKSSTKLEKLAITIPT------RQALHAYKLSFIHPTTAKMVKFKSK 298 Query: 301 IPQDMVELIEVMRADFEEHKDE 322 +P+DM+ L + E ++ Sbjct: 299 LPEDMLNLKAQLEQTVEMLDED 320 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 130/310 (41%), Positives = 176/310 (56%), Gaps = 18/310 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 TV E RLD LA P+ SR+RI++ I + V VNG+ + +V GG+ V + Sbjct: 6 RYTVEEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRPA-RASHRVRGGDCVEL 64 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP-- 125 E R EP+ IPL++ +ED D++++NKPR LVVHP G+ GT++NALLH+ Sbjct: 65 KVPDPETPRIEPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLHHCRDLS 124 Query: 126 -IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 I + R GIVHRLD+DT+GL++VAK A L L+ R + R Y A+ G G Sbjct: 125 GINGILRPGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETG 184 Query: 184 TVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 TVD PI RHP R MAV P G+ A THYR++ F + L L L+TGRTHQIRVHMAH Sbjct: 185 TVDAPIGRHPRDRQRMAVTPRSGRAARTHYRVVRRFDKFSLLELTLDTGRTHQIRVHMAH 244 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HPLVGD YG + Q LHA L HP +G + + AP+P Sbjct: 245 VGHPLVGDLKYGHAR------------PELGLEGQFLHAGTLGFRHPRTGEVLVFEAPLP 292 Query: 303 QDMVELIEVM 312 ++ ++E + Sbjct: 293 SELAAVLERL 302 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 158/310 (50%), Positives = 201/310 (64%), Gaps = 9/310 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V GQRLDQ LA + +SRSR+++WI + RV V G V +P+ ++ GGE +A Sbjct: 29 IALRVPTACGGQRLDQVLARLLSQHSRSRLQDWIREGRVAVGGAVTVEPRFRLWGGETIA 88 Query: 67 INAEIEEEARF-EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + +E A P++IPL IV+ED+ +I+++K LVVHPG+GN GT+LN LLH+ P Sbjct: 89 LTESTDERAEASAPEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQ 148 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 +A VPRAGIVHRLDKDTTGLMVVAKT+ AQT LV LQ R + R Y+A+ G + G V Sbjct: 149 LARVPRAGIVHRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEGAGIV 208 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D PI RHPT RT MAV G+PA THYR++E F T + LETGRTHQIRVHM I H Sbjct: 209 DAPIGRHPTVRTRMAVVSGGRPARTHYRVLERFVACTLIECALETGRTHQIRVHMTSIAH 268 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PLVGDP+YGG + + F RQALHA L L HP SG M W + +P DM Sbjct: 269 PLVGDPIYGGGA--------SRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADM 320 Query: 306 VELIEVMRAD 315 LI+ +R + Sbjct: 321 AALIDRLRLE 330 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 176/320 (55%), Gaps = 14/320 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 +T VS+ Q R+D+ L + + +R++++ I + RVLVNGK K +V + + Sbjct: 1 MTLDVSKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPV-KSNYRVKSCDHIH 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + P+DIP+ I+YED+D+++I+K +VVHP GN GT+ NA+LH+ Sbjct: 60 LTFLRPPAPELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKD 119 Query: 127 ADVP-----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 AD R GIVHRLDKDT+GL+++AK A +L R++ + Y+A+ G Sbjct: 120 ADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKA 179 Query: 181 AGGTVDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 GT+ I R R MA P GK A+T Y+++E + + + L TGRTHQI Sbjct: 180 ESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGG---RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 RVH+ H+ H ++GD YGG R P + + L RQALHA LR P +G Sbjct: 240 RVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFRQPTTGE 299 Query: 294 EMEWHAPIPQDMVELIEVMR 313 + + AP+P+DM ++E +R Sbjct: 300 PLSFSAPLPEDMELVLEKIR 319 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 395 bits (1017), Expect = e-109, Method: Composition-based stats. Identities = 146/318 (45%), Positives = 196/318 (61%), Gaps = 9/318 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + E G+RLD+ALA++ PDYSRSR+++WI V V G +P+ V GG+++ Sbjct: 39 IIVEIPEALHGERLDKALAKLLPDYSRSRLQQWIDAGAVRVGGAAV-RPRAAVCGGDRIE 97 Query: 67 INAEI-EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + ++E F + + LD+VYED+ +++INKP LVVHP AGN GTVLN LLH YP Sbjct: 98 VVPQRADDENAFVAEPVDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLLHRYPQ 157 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 A +PRAGIVHRLDK+T+GLMVVA+T+PAQT LV LQ R + R Y A+ G GT+ Sbjct: 158 AAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGETPEAGTI 217 Query: 186 DEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVH 239 D PI R P RT MA+ GKPA TH++ ++ + ++ +LETGRTHQIRVH Sbjct: 218 DAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRTHQIRVH 277 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 HPL+GDPVY R F RQALHA L L HP SG + WHA Sbjct: 278 FESEGHPLLGDPVY-TRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQSVHWHA 336 Query: 300 PIPQDMVELIEVMRADFE 317 +P D+ EL++ + D + Sbjct: 337 GVPDDLAELMDALEMDPD 354 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 136/307 (44%), Positives = 201/307 (65%), Gaps = 5/307 (1%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TV++ Q GQR+D+ A+MF ++SR+++++W+ + VN +K K +V G+ V + A Sbjct: 108 TVTQEQAGQRIDKLAADMFTEHSRAQLQDWLKSGNLTVNDHN-EKAKYRVKIGDIVRLEA 166 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV 129 ++E+ +P+DI LDI+YED+ +I+INKP +VVHPGAGN GT++N LL++YP A + Sbjct: 167 KLEQHGSDQPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYHYPNQAHL 226 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH---MTAGGTVD 186 PRAG+VHR+DK+T+GL+V+ KT AQ L E L+ + + R Y+ V G + T+D Sbjct: 227 PRAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSLARQRTID 286 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIRVHMAHITH 245 PI RH T+RT M V GK A+TH + ++ L +RLETGRTHQIRVH++HI H Sbjct: 287 APIGRHRTQRTKMTVTSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQIRVHLSHIGH 346 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P++GD +YG R + G + ++ F RQALHA L HP +G +E AP+PQD+ Sbjct: 347 PIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIELTAPLPQDI 406 Query: 306 VELIEVM 312 VEL + Sbjct: 407 VELAHTL 413 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 130/314 (41%), Positives = 169/314 (53%), Gaps = 20/314 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + T + RLDQ LA P+ SRSRI+ I VLVNG KPK V G+ + Sbjct: 1 MNLTTDDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPA-KPKNPVSRGDSIT 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 + E A +PQDIPLDI+YEDED+++INK +VVHP AGNPDGT++NALLH+ Sbjct: 60 VRIPEPEPAEAQPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHCGDL 119 Query: 126 --IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-G 182 I V R GIVHRLDKDT+G +V+AK A L R + Y AV G + Sbjct: 120 SGIGGVERPGIVHRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPSQSS 179 Query: 183 GTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRIM--EHFRVHTRLRLRLETGRTHQIRV 238 GTV I RHP R MAV GK A+T Y ++ + + + L TGRTHQIRV Sbjct: 180 GTVFTHIGRHPVNRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQIRV 239 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HM ++ HPL+GDP+Y R R LHA L HP +G M++ Sbjct: 240 HMLYLGHPLIGDPIYAKPARQKAKP-----------GRLMLHAWRLGFDHPRTGKRMDFE 288 Query: 299 APIPQDMVELIEVM 312 AP+P + +++ Sbjct: 289 APVPPEYTPWLQLF 302 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 128/332 (38%), Positives = 183/332 (55%), Gaps = 22/332 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 + + E L QRLDQ LA+ + D SRSR++ I + + ++G+ +PK K+ + Sbjct: 1 MVIQKVTDEGALDQRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQ 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + +A + I LDI+YED+ +I+INKP LVVHPG GN GT++NAL+++ Sbjct: 61 IIELEMPNLRDAEPSAEAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHC 120 Query: 124 PP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVA 175 I V R G+VHRLDK+T+G+MVVAK A L + R Y A+ Sbjct: 121 GNSLSGIGGVKRPGVVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHALI 180 Query: 176 IGHMTAG-GTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVH-------TR 223 G T+D + R P RT AV P + AVTH+ ++E + H + Sbjct: 181 WGTPHRNVWTIDASLGRSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFASL 240 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHAT 282 L RLETGRTHQIRVHMAHI HPL+GD VYG + + + + +F+R ALHA Sbjct: 241 LECRLETGRTHQIRVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALHAA 300 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 L HP SG + + AP+PQDM +LI+ ++ Sbjct: 301 SLTFEHPSSGKVISFSAPLPQDMAQLIKHLKK 332 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 132/322 (40%), Positives = 178/322 (55%), Gaps = 24/322 (7%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 Q+++ G RLD + E SRS I+ I + VLVNG K KV Sbjct: 32 EQKMEFRL-----AEGTRLDVGVTERV-GKSRSFIQGLIEEGHVLVNGA-ARKANYKVRA 84 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 +Q+A+ E + E ++IPL+I+YEDED++++NK + +VVHP G T++NALL+ Sbjct: 85 MDQIAVVIPPPRELKVEAENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLY 144 Query: 122 YYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + I V R GIVHR+DKDT+GL+VVAK A L E ++ + R Y A+ G Sbjct: 145 HCRNLSGINGVLRPGIVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGV 204 Query: 179 M-TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + GTV+ PI R P R MAV K AVTHY ++E FR T L RLETGRTHQI Sbjct: 205 VFEPSGTVEAPIGRDPADRKKMAVVFQNAKEAVTHYEVLERFRDFTLLEARLETGRTHQI 264 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMA++ HP++GDP+YG R P Q LHA +L HP SG ME Sbjct: 265 RVHMAYLKHPVLGDPLYGPRKNP------------FGLQGQMLHAQLLGFQHPRSGEYME 312 Query: 297 WHAPIPQDMVELIEVMRADFEE 318 + AP +++E +R D E Sbjct: 313 FSAPASGMFQKVLEEIRRDDLE 334 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 137/350 (39%), Positives = 173/350 (49%), Gaps = 37/350 (10%) Query: 3 QRVQLTATVSENQ-LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 Q V + V G RLD LA SR++I+ I + RV VNG V KP V Sbjct: 4 QEVCIQLEVPPGYREGGRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQP 63 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ + + P+ IPLDIVYED +I++NK LVVHP GN GT++NALL+ Sbjct: 64 GDVITLRILRPPPVEIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLY 123 Query: 122 YYPP-----------------------------IADVPRAGIVHRLDKDTTGLMVVAKTV 152 Y + PR GIVHRLDKDTTGL+VVAK Sbjct: 124 YIGSGPVRFDEEDDLPEDDEIGLSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDD 183 Query: 153 PAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPM--GKPAV 209 T L + R I R Y A+ G G ++ I R P R MAV P GK AV Sbjct: 184 VTHTGLARQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAV 243 Query: 210 THYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGR----PRPPKGASE 265 THY ++E +R +LETGRTHQIRVH HI HP++GDP YGGR Sbjct: 244 THYEVVEALPAAALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRA 303 Query: 266 AFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 + + RQALHA L HP +G +E+ AP+P+DM +E +R D Sbjct: 304 FYDQLFARLTRQALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQD 353 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 111/305 (36%), Positives = 169/305 (55%), Gaps = 19/305 (6%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIE 72 G+RLD+ +A+ D SRS I+ I V VNGK KP K+ G+ + I E Sbjct: 10 AESDGERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTA-KPSLKLKNGDTITIEISPE 68 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD---V 129 + +DIPL+I+++D+D+++INKP L VHP G+PD T++N +L P + D Sbjct: 69 TPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLINGVLALEPKMEDFDDP 128 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEP 188 R GIVHRLDKDT+GL++VAK L + R + + Y + G + A G ++ P Sbjct: 129 LRPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAP 188 Query: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248 + R P R +AV G+ A T Y+++ + + ++ L ++LETGRTHQIRVH A I HP+ Sbjct: 189 LGRDPQNRQKIAVVSNGRHARTGYKVLRYIQGYSLLEVKLETGRTHQIRVHFAAIGHPVA 248 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 GD +YG + RQ LHA L P +G +E+ +P+P D+ E Sbjct: 249 GDAIYGQKETW--------------LKRQFLHAHRLSFTLPSNGQTVEFTSPLPPDLEET 294 Query: 309 IEVMR 313 ++++ Sbjct: 295 LKILE 299 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 145/322 (45%), Positives = 203/322 (63%), Gaps = 5/322 (1%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + +Q +V QR+D LA + P+YSRS I WI V +N C KPK+K L Sbjct: 1 MIEHIQQQLSVPRELHNQRVDSVLARLLPEYSRSLICNWIKTGAVTLNNLPC-KPKDKAL 59 Query: 61 GGEQVAI----NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 GG+ + I + +P++IP+ I+YED ++I++NKP LVVHPGAGN + T++ Sbjct: 60 GGDLITINVNHTIVNTDFNLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLV 119 Query: 117 NALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 NALLH+ P + +PRAGI+HRLDKDTTGL++VAK + + T L+ +Q REI R Y + Sbjct: 120 NALLHHCPELQLLPRAGIIHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVH 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G++ +GGT+D RHP R MAV G+ AVTHY I +H++ T L + L TGRTHQI Sbjct: 180 GYVISGGTIDTGFGRHPKNRLKMAVTDFGRQAVTHYNINKHYKDFTLLNVSLMTGRTHQI 239 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM +I HP+VGD +YGGR + P A EA +S L++F RQALHA + HP+ E+ Sbjct: 240 RVHMNYINHPVVGDQLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEIT 299 Query: 297 WHAPIPQDMVELIEVMRADFEE 318 +A +P D L+ + E+ Sbjct: 300 LNALLPDDFELLLNTLDQHDEK 321 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 392 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 112/328 (34%), Positives = 172/328 (52%), Gaps = 29/328 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V + +RLD L++ ++RSR++ + ++ V +N + KV GG+++ Sbjct: 19 REFLVPRGEQPKRLDIYLSKNCLGFTRSRVQRLLEEKLVTIND-IYPASSHKVRGGDRIR 77 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + +P++I L+I+YEDED+I+I+KP LVVHP G+ GT++N LL ++ Sbjct: 78 VLIPPPRSQTAQPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGLLFHFQSQ 137 Query: 127 AD---------------VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 D RAG+VHRLD+DT+G+MVV KT L+ + R ++++Y Sbjct: 138 GDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKDRSVSKKY 197 Query: 172 EAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLE 229 A+ G + G ++ PI R R V GKP+VT YR++E + ++ L + L Sbjct: 198 LALVKGILPKKRGEINAPIGRSTHDRKKFTVRQDGKPSVTRYRVLETYHENYSLLEVTLL 257 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH ++ PL+GD VYG + K F RQ LHA L HP Sbjct: 258 TGRTHQIRVHFRYLGFPLLGDAVYGSKGTENK-----------NFPRQMLHAWKLSFQHP 306 Query: 290 ISGIEMEWHAPIPQDMVELIEVMRADFE 317 S +ME+ AP+P D V +E + Sbjct: 307 SSNSKMEFEAPLPPDFVSALERLTPSLP 334 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 132/328 (40%), Positives = 181/328 (55%), Gaps = 13/328 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + S+ Q R+D+ L + +R++I++ + + VN + K KV G+Q+ Sbjct: 54 HFSFIASKGQEPLRIDKYLMNFIENATRNKIQQAAKEGHIWVND-LVVKQNYKVKAGDQI 112 Query: 66 AINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E P+DIPLD+VYED D++++NKP +VVHPG GN GT++NALL + Sbjct: 113 KVMFTHPPYEFLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVK 172 Query: 125 P--IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 + R G+VHR+DKDT+GL+VVAKT A T L + + REY A+ G++ Sbjct: 173 DLPLNADERPGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEE 232 Query: 183 -GTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 GTV I RHP R MAV P GK AVTHY++ME T + LETGRTHQIR Sbjct: 233 QGTVRGHIGRHPKNRLQMAVFPDGDQGKEAVTHYKVMERLGYVTLVSCVLETGRTHQIRA 292 Query: 239 HMAHITHPLVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 HM HI H L D YGG + + + + RQALHA L HP SG Sbjct: 293 HMKHIGHTLFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGEL 352 Query: 295 MEWHAPIPQDMVELIEVMRADFEEHKDE 322 M ++ PIP+DMV IE RA + +H+ E Sbjct: 353 MRFNTPIPEDMVLCIEKWRA-YAQHQQE 379 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 132/334 (39%), Positives = 178/334 (53%), Gaps = 24/334 (7%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 A + E+ G RLD LA SR+R+K I V VNG +PK K+ Sbjct: 8 AGEPRKELIAGEDAEG-RLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIK 66 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+Q+ I E+ + +DIPL ++YED+D+I+++KP LVVHPGAGN GT++NAL+ Sbjct: 67 PGDQLVIAMPEPEDPEPKGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALI 126 Query: 121 HYYPP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE----ITREYE 172 H+ I V R GIVHRLDK+T+G+MVVAK A L + + R Y+ Sbjct: 127 HHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQ 186 Query: 173 AVAIGHMTA-GGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRV------- 220 A+ G GT+D + R RT V + A+THY++ME + Sbjct: 187 ALVWGRPRGLRGTIDAALGRA-GDRTKRTVKREDTDDAREAITHYQVMERYGEKPDATCL 245 Query: 221 HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFIST-LRKFDRQAL 279 + + RLETGRTHQIRVHMAHI HPL+GDP YG + + F RQAL Sbjct: 246 ASLVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQAL 305 Query: 280 HATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 HA +L HP +G M + APIP DM +I +R Sbjct: 306 HAYLLAFEHPTTGDVMHFAAPIPDDMETIIRALR 339 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 121/324 (37%), Positives = 175/324 (54%), Gaps = 20/324 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + V+ + G RLD+ + E P+ SR+ I+ I + VLVNG KP KV G+ + Sbjct: 1 MDIQVTSRENGWRLDKFVMEKTPEWISRTFIQRAIKNGEVLVNGTS-KKPSYKVKSGDII 59 Query: 66 AINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 +NA E P+DIPLDI+YED DI++INK ++ HP + GT++N +L++ Sbjct: 60 TLNAPEAPEIPEILPEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVLYHCK 119 Query: 125 P---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 I V R GIVHRLDKDT+G+MV+AK A L + + R + Y + G Sbjct: 120 DLQGIGGVLRPGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKR 179 Query: 181 AGGTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIR 237 G ++ I+R+P R M V GKPA+THY+++ F + +TGRTHQIR Sbjct: 180 KEGDIEINIARNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRTHQIR 239 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM +I HPL+GD VYG + RQ LHA L YHP +G ++++ Sbjct: 240 VHMKYIGHPLMGDEVYGRAKED----------EIFGIKRQMLHALSLSFYHPRTGEKVKF 289 Query: 298 HAPIPQDMVELIEVMRADFEEHKD 321 A IPQD E I+ + ++K+ Sbjct: 290 IAKIPQDFKEAIQKLDDFIRKNKN 313 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 174/312 (55%), Gaps = 9/312 (2%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V + G RLD+ LA P+ SR+RIK + D RV + +V G+ ++ Sbjct: 192 VEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDVP 251 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP----I 126 + A+ EPQDI L +VYEDED+I+I+KP +VVHP GNPD T++NALL + I Sbjct: 252 PDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGI 311 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTV 185 V R GIVHR+DKDT+GL+V AKT A L + R Y A+ G G + Sbjct: 312 GGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEI 371 Query: 186 DEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAH 242 + I R+P R MAV GKPA+T YR+++ F + + RL TGRTHQIRVHM Sbjct: 372 EGNIGRNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTT 431 Query: 243 ITHPLVGDPVYGG-RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 HPLVGDPVYG R + L +F RQALHA +L HP G ++ + + + Sbjct: 432 QGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESGM 491 Query: 302 PQDMVELIEVMR 313 P D+ L++++ Sbjct: 492 PLDINALMQILE 503 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 171/323 (52%), Gaps = 24/323 (7%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + V + + G R+D+ L+E + +R+RI++ I D+ +LVN K KP K+ Sbjct: 19 NSENEENIVVLKEEAGSRIDKFLSERL-ELTRTRIQQLIKDENILVNEKK-TKPAYKIEE 76 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + + E +P++I ++I+YED D+ +INK +VVHP G+ GT++NA+L+ Sbjct: 77 NDTIKVVIPELETVEIKPENIDIEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILY 136 Query: 122 YYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + I R GIVHRLDKDT+GL+++AK A +L + + + + Y A+ G Sbjct: 137 HIKDLSGINGEIRPGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGK 196 Query: 179 M-TAGGTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 + G + I R R M V GK A+T+Y ++ T +++ +ETGRTH Sbjct: 197 LNQKSGRIVTQIGRDKNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKVHIETGRTH 256 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM H+ +P++GD VYG RQ LHA L HPI+ Sbjct: 257 QIRVHMKHLGYPILGDSVYGRTDTE---------------KRQMLHAYKLEFQHPITEEN 301 Query: 295 MEWHAPIPQDMVELIEVMRADFE 317 +E+ A +P+D + ++ +FE Sbjct: 302 LEFIAKLPEDFKKALKKCGLEFE 324 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 117/323 (36%), Positives = 170/323 (52%), Gaps = 13/323 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M L V + RLD+ LA +PD+SRS IK+ + + V VNG+ KP K+ Sbjct: 1 MKISEVLEFKVEGEEE--RLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLR 58 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE+V ++ E +P++IP++I+YEDEDI ++ KP LVVHP G GT++NALL Sbjct: 59 EGERVILHVPEPEPLDVKPENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALL 118 Query: 121 HY---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 ++ I V R GIVHRLDK+T G+MV+AK A LV Q R+ + Y+ + G Sbjct: 119 YHIKDLSSIGGVERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKG 178 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTH 234 + G +D PI+RHP R V GK A+T Y +++ + + T L++++ TGRTH Sbjct: 179 LVKKDYGAIDTPIARHPVDRKRFWVRKEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTH 238 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH A I HP++GD YG + + + L A L YHP G Sbjct: 239 QIRVHFASIGHPVLGDRTYGFKSSSVPKELLSLMGECN-----MLIAYHLGFYHPTKGEW 293 Query: 295 MEWHAPIPQDMVELIEVMRADFE 317 M + P+ + + Sbjct: 294 MVFEIEEPETFKSVYSWLEEHSP 316 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 132/319 (41%), Positives = 202/319 (63%), Gaps = 8/319 (2%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + ++ TV+ Q+G+R+D+ A +F DYSR +IK W+ + VNG KPK ++ Sbjct: 62 SHQIIQNYTVNSEQIGERIDKIAALVFSDYSREQIKNWLESGELTVNGA-AQKPKYRLKP 120 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + + A + + + P++IPLDI+YEDE +++INKP LVVHPGAGN GT++NALL Sbjct: 121 NDMLVLKASLTAQQQDLPENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNALLF 180 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA---IGH 178 +YP +PRAG+VHR+DK+T+GLMV+AK +Q L+ L+ + + R Y+A+ Sbjct: 181 HYPDSRTLPRAGLVHRIDKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLASAAE 240 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIM-EHFRVHTRLRLRLETGRTHQIR 237 + T+D PI RHPT+RT MAV GKPAVTH + + + +RLETGRTHQIR Sbjct: 241 LARHRTIDAPIGRHPTQRTKMAVVSSGKPAVTHLEKITAISDAVSLVSVRLETGRTHQIR 300 Query: 238 VHMAHITHPLVGDPVYGGRPRPP---KGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 VH++++ PL+GDP+YG + K + +++F RQALHA L HP +G Sbjct: 301 VHLSNLGFPLLGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHPKTGEP 360 Query: 295 MEWHAPIPQDMVELIEVMR 313 ++ A +P+DM +L++ ++ Sbjct: 361 IKVQARLPEDMQQLLDTLK 379 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 388 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 138/314 (43%), Positives = 176/314 (56%), Gaps = 18/314 (5%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 V+E LG RLD+ LAE P+ SRSR ++ I +V NG VC + G+++ +N Sbjct: 25 VAEGTLGVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIP 84 Query: 71 IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IA 127 Q+IPLDI+YEDE +IIINKP LVVHPG G+PDGTV+NALL + P I Sbjct: 85 ELIPLDVVAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIG 144 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVD 186 V R GIVHRLDKDTTG MVVAKT A L L+ + R Y + G GTV+ Sbjct: 145 GVQRPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVN 204 Query: 187 EPISRHPTKRTHMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 P+ RHP R M + P G+ AVTH+R++E H+ L +LETGRTHQIRVH + Sbjct: 205 LPVGRHPGDRQKMGIVPVEKGGREAVTHWRLLERIGNHSWLEFQLETGRTHQIRVHSKQM 264 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +Y + S QALHA L L HP+SG + AP+P Sbjct: 265 GHPLVGDNLY-----------TSPGSVNVNLPGQALHAHQLSLIHPVSGEIITAIAPMPA 313 Query: 304 DMVELIEVMRADFE 317 +L+ +R Sbjct: 314 HFEKLLVYLRQRIP 327 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 133/313 (42%), Positives = 183/313 (58%), Gaps = 14/313 (4%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVN--GKVCDKPKEKVLGGEQV 65 T++E +G RLD+ALA + SR R+K I V N G + P K+ + Sbjct: 5 QVTLTEEMIGWRLDRALASLITRLSRERLKNLISSGCVS-NSQGALVRDPAFKIKSLDCF 63 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY--- 122 ++ + A EPQDIPL+IV+EDE ++++NKP +VVHP AGN D T++NALL++ Sbjct: 64 TVDIPLPRPAHNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLYHCAG 123 Query: 123 -YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 I V R GIVHR+DKDT+GL+VVAKT PA L I R Y A+ GH + Sbjct: 124 KLSGIGGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDGHPSL 183 Query: 182 GGTVDEPISRHPTKRTHMAVHPM--GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 G VD P++R R MA+ GK AVTHYR++ + + + RLETGRTHQ+RVH Sbjct: 184 QGHVDAPLARSSVNRQKMAIVSDGRGKRAVTHYRMITPLKNASLIECRLETGRTHQVRVH 243 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M+ I H L+GDPVYG + ++ F RQALHA L HPISG ++++ A Sbjct: 244 MSSIGHSLLGDPVYGRSKKAHHALLQSLA-----FQRQALHAAHLGFIHPISGKQVDFDA 298 Query: 300 PIPQDMVELIEVM 312 +PQDM L +++ Sbjct: 299 EMPQDMQLLFKML 311 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 172/323 (53%), Gaps = 15/323 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 V NQ R+D+ LA+ SR+RI++ + VNGK K KV + V Sbjct: 53 HWKVQVDANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPV-KSNYKVRPNDLV 111 Query: 66 AINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + E +P++I +++VYED+ ++++NK +VVHPGAGN GT++ A+ + Sbjct: 112 TLMLDRPRHETSIKPEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAWHLR 171 Query: 125 PI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-M 179 + A+ P G+VHR+DKDT+GL+VVAKT A+ L + + R Y A+ G+ + Sbjct: 172 DMPEFDANDPEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWGNIV 231 Query: 180 TAGGTVDEPISRHPTKRTHMAV-HPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 G ++ I R P R M V P GK AVTHY+++E F T ++ LETGRTHQ Sbjct: 232 EDEGRIEGNIGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVLETGRTHQ 291 Query: 236 IRVHMAHITHPLVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 IR HM HI HPL D YGG R + + + RQALHA L HP + Sbjct: 292 IRAHMKHIGHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVHPTT 351 Query: 292 GIEMEWHAPIPQDMVELIEVMRA 314 +M++ + P D +LIE R Sbjct: 352 KQQMDFDSEWPNDFRQLIEKWRG 374 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 117/314 (37%), Positives = 181/314 (57%), Gaps = 18/314 (5%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + + +R+D+ L++ P SRS+I++ I + + VN K K KV G+++ Sbjct: 3 KQRYEIYVEGESERIDKYLSKKVP-LSRSQIQDLIEKELIKVNEKPI-KNSYKVKLGDRI 60 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E +PQDIP++IVYEDED++IINKP+ +VVHP G+ + T++NALL+ Sbjct: 61 EVIIPPPVETEVKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALLYRVKD 120 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 I R GI+HRLDKDTTGL+++AK + +L E L+ R + R Y A+ G + Sbjct: 121 LSGIGGELRPGIIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWE 180 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 ++ PI RHP R MA+ P GK A+T+++++E F+ +T + LETGRTHQIRVH++ Sbjct: 181 EKRIEAPIGRHPINRKKMAIVPYGKIAITNFKVLERFKGYTLISADLETGRTHQIRVHIS 240 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H+ P+VGD VYG I Q LHA + HP GI ME+ + Sbjct: 241 HLGFPIVGDEVYGR------------IDKKFGVKGQLLHAKKVSFIHPTKGIPMEFEIDL 288 Query: 302 PQDMVELIEVMRAD 315 P++ +++ ++R Sbjct: 289 PEEFKKVLTLLREK 302 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 109/323 (33%), Positives = 172/323 (53%), Gaps = 29/323 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V + +RLD L+ ++RSR++ + ++ V +N + K+ GG+++ Sbjct: 19 REFLVPRGEQPKRLDIYLSRNCLGFTRSRVQRLLEEKLVTIND-IYPASSHKIRGGDRIR 77 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + +P+DI L+I+YED+D+I+I+KP LVVHP G+ GT++N LL ++ Sbjct: 78 VLIPPPRSQAAQPEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGLLFHFQSQ 137 Query: 127 AD---------------VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 D RAG+VHRLD+DT+G+MVV K+ L+ + R ++++Y Sbjct: 138 GDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKDRSVSKKY 197 Query: 172 EAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLE 229 A+ G + G ++ PI R R AV GKP++T YR++E + ++ L + L Sbjct: 198 LALVKGILPKKRGEINAPIGRSTHDRKKFAVRQDGKPSLTRYRVLETYHENYSLLEVTLL 257 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH H+ PL+GD VYG + + F RQ LHA L HP Sbjct: 258 TGRTHQIRVHFRHLGFPLLGDAVYGSKGMENR-----------NFPRQMLHAWKLAFQHP 306 Query: 290 ISGIEMEWHAPIPQDMVELIEVM 312 S +ME+ AP+P D V ++ + Sbjct: 307 RSAAKMEFEAPLPPDFVSAMKRL 329 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 126/330 (38%), Positives = 178/330 (53%), Gaps = 21/330 (6%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 ++++ G R+D+ LA + +SRS +K IL+ + +NG V P KV+ Sbjct: 9 SSIKISLLSDSTAEG-RIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVP 67 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ I ++ ++IPLDI+YED+DII+INKP LVVHP GN GT++NALL+ Sbjct: 68 GDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLY 127 Query: 122 Y----YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEA 173 + I V R GIVHRLDKDTTG+MVVAK A +L E + R Y A Sbjct: 128 HCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYA 187 Query: 174 VAIGHM-TAGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRV-----HTR 223 + G G ++ P+ R + R AV A+THY+ +E + + Sbjct: 188 MVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSL 247 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHAT 282 L+ LETGRTHQIRVHMAH +PL+GDP+YG G + S + RQALHA Sbjct: 248 LKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAH 307 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 L HP + +M++ PIP+DM+ +I + Sbjct: 308 SLSFSHPRNNQDMDFQVPIPEDMLTVIRKL 337 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 129/321 (40%), Positives = 177/321 (55%), Gaps = 20/321 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 TV Q G R D+ LAE ++SRS +++ + V +NG+V KP KV G+++ Sbjct: 47 REITVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDRMV 106 Query: 67 INA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + ++ F+P+D+ LD+VYEDE ++++NKP LVVHP GN GT+LN LL P Sbjct: 107 LEMRPTQQSMAFQPEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPK 166 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH--MTAGG 183 +VPRAGIVHRLDKDT+GLMVVA++ A LV + R+++R+Y A+A Sbjct: 167 AREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHR 226 Query: 184 TVDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 VD PI R P R MAV GK A T ++ + +R L TGRTHQIRVH Sbjct: 227 EVDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHTGRTHQIRVH 286 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 MA + HPLV D VYGG+ RQALHA L HP++G + A Sbjct: 287 MASLGHPLVADAVYGGKEA-------------GGMARQALHAFRLAFTHPMTGQALVLRA 333 Query: 300 PIPQDMVELIEVMRADFEEHK 320 P+P DM + +E + + Sbjct: 334 PLPPDMAQALENWGLSYNPAE 354 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 118/323 (36%), Positives = 175/323 (54%), Gaps = 23/323 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M +R+ V +RLD +A+ P + SR+ I+ I ++ VNG KP KV Sbjct: 1 MEKRM---YKVEREDEQKRLDIYIAQKMPIEISRNLIQNAITKGQITVNGS-QKKPHYKV 56 Query: 60 LGGEQVAINA----EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 G+++ I+ E +E P++IPL+I+YEDE++I+INKP L+VHP GT+ Sbjct: 57 KQGDEIQIDFHELVEETKEENILPENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTL 116 Query: 116 LNALLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 +NAL+H+ + D R GIVHRLDK+T+G++VVAK + L + + R+ + Y Sbjct: 117 VNALMHHVKDLDKTMQDPNRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYY 176 Query: 172 EAVAIGHMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV-HTRLRLRLE 229 A+ G + G ++ P+ RHP R AV GK A+T Y+ ++ F T + +RL Sbjct: 177 LAIVEGTLKEKEGEINLPLGRHPILRHKRAVVYNGKEAITEYKTLKEFGDLATLVWIRLR 236 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVH +I +PL+GD +YG RQ LHA L YHP Sbjct: 237 TGRTHQIRVHFKYIGNPLIGDSLYGKNKIEKNLQIP--------VGRQMLHALKLGFYHP 288 Query: 290 ISGIEMEWHAPIPQDMVELIEVM 312 + ME+ AP+P D L+ + Sbjct: 289 KTKEWMEFLAPLPDDFKNLLITL 311 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 122/312 (39%), Positives = 177/312 (56%), Gaps = 7/312 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT V RLD+AL+++ SR++I++ I + +VLVN + P V + + Sbjct: 2 LTYNVPNELNNIRLDKALSQLLEKISRNQIQKAIKNSQVLVNDVIISDPDVLVKENDVIL 61 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---Y 123 + EE + +I LDI+YED+D+I+INK + VHPGAG+ D T++NALL++ Sbjct: 62 FAFKEPEELKIAAVNIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVNALLYHTKNL 121 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 I R GIVHRLDKDTTGLMVVAK A L +++R++ R+Y+A+ G + Sbjct: 122 SDIGSAARPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKALVWGVINPLA 181 Query: 183 GTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIME--HFRVHTRLRLRLETGRTHQIRVH 239 G + I R +R M++ GK AVTHY+ +E + + + RL TGRTHQIRV Sbjct: 182 GVIKNNIGRSRVERQKMSILKYGGKEAVTHYKTLELFYGGTISMVECRLNTGRTHQIRVQ 241 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++H+ H +VGD YG R +S A + L F RQALH+ L HP S ME+ Sbjct: 242 LSHVKHSVVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHPTSNKIMEFSC 301 Query: 300 PIPQDMVELIEV 311 +P+DM +I Sbjct: 302 ELPRDMEAIIAT 313 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 156/306 (50%), Positives = 208/306 (67%), Gaps = 1/306 (0%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ + +GQR+D A+A+M P+YSR +I WI L+ KPKEKVLGGE + Sbjct: 4 LSVIIPNRFIGQRIDAAMAQMLPNYSRVKITYWIKSGDALI-HHKTFKPKEKVLGGEVIT 62 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 ++ +IE+ + QDI +D+VYEDE III+NKP +LV HPG N GT+ NALLHY + Sbjct: 63 LSIKIEKTNAWLAQDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLANALLHYDSSL 122 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 A++ RAGIVHRLDK+T+GLMVVA++ AQ L LQ I+REY A+ GHM +GGTVD Sbjct: 123 ANLDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISGGTVD 182 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 +PI R P R V GK A+THYR++E F HT +++ LETGRTHQIRVH++ I HP Sbjct: 183 KPIGRDPKDRIRQTVTESGKDALTHYRVIERFAHHTHVKVMLETGRTHQIRVHLSFIGHP 242 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 L+ DP+YGG+ R PK A + ++L+ F+RQ LHA L L HP S M W P+PQDM Sbjct: 243 LIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQDMQ 302 Query: 307 ELIEVM 312 +L++V+ Sbjct: 303 DLLQVL 308 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 197/315 (62%), Gaps = 3/315 (0%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + G RLD L+ + P++SRS+I+ I + + +NG + KV+GGE++ I Sbjct: 9 KLIIPATFFGSRLDAVLSNLVPEFSRSKIQSMIKNDLIFLNGSHVSQ-NYKVVGGEEIVI 67 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 N IE+E ++I LDIVYED+DI+++NKP +LVVHPG+GN +GT+LN LL+Y + Sbjct: 68 NGVIEDEIDVIAENISLDIVYEDDDILVLNKPYNLVVHPGSGNANGTLLNGLLYYNKDLE 127 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 +PR GIVHRLDKDTTGLMVVAK +Q L+ LQ + + REY A+ G + + + Sbjct: 128 KLPRGGIVHRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYRAIVWGQIWQNKVIQK 187 Query: 188 PISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI RHP +RT MAV GK A T I+E F HT +R L+TGRTHQIRVHM P Sbjct: 188 PIGRHPRQRTKMAVTKVNGKDAETKLEILERFNYHTYVRCLLKTGRTHQIRVHMLDNNSP 247 Query: 247 LVGDPVYGGRP-RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 +VGD YG + P K + +++ FDRQALHA L L HP + EM+W +P+DM Sbjct: 248 IVGDKDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIHPKTNKEMKWTIDLPEDM 307 Query: 306 VELIEVMRADFEEHK 320 EL+ V+R D E+ Sbjct: 308 KELLSVIRKDSVEND 322 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 126/331 (38%), Positives = 179/331 (54%), Gaps = 23/331 (6%) Query: 7 LTATVSENQL-GQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +T +++ GQR+DQ LA+ + + SRSR++ I + + ++GK+ +PK K+ + Sbjct: 1 MTQQITDEDALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQT 60 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + A E + IPL I++ED+ II++NKP LVVHPG GN GT++NAL+++ Sbjct: 61 IELTIPTLNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYHCG 120 Query: 125 P----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVAI 176 I V R GIVHRLDK+T+G++VVAK A L + R Y A+ Sbjct: 121 DSLSGIGGVRRPGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRYHALIW 180 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRV-------HTRL 224 G G + + R RT AV + + AVTH+ ++E ++ + L Sbjct: 181 GSPNRNIGVITASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIPFASLL 240 Query: 225 RLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATM 283 RLETGRTHQIRVHMAHI HPLVGD VYG + + F+RQALHA Sbjct: 241 ECRLETGRTHQIRVHMAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQALHAAS 300 Query: 284 LRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 L HP G M + AP+PQDM ELI + Sbjct: 301 LTFEHPAKGNIMSFSAPLPQDMAELINHFKK 331 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 119/310 (38%), Positives = 178/310 (57%), Gaps = 18/310 (5%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 + GQR+D+ L E ++SR++I++WI V VN +V K K + + + + Sbjct: 10 NPEDTGQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVI-KSNYKTKMNDHIVVTEKE 68 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IAD 128 EA +P+++ LDI YED+D+ I+ KP+ +VVHP AG+ GT++N L++ I Sbjct: 69 TVEADIQPENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNLSGING 128 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDE 187 R GIVHR+DKDT+GL++VAK A LV+ L + +TR+Y A+ G + GTVD Sbjct: 129 EIRPGIVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHDYGTVDA 188 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 PI R+ R M V GK AVTH+ ++EHF +T + +LETGRTHQIRVHM +I +PL Sbjct: 189 PIGRNKNDRQSMDVVDDGKEAVTHFNVLEHFNKYTLIECQLETGRTHQIRVHMKYIGYPL 248 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 VGDP YG + QALHA ++ HP++ +E +P+D + Sbjct: 249 VGDPKYGPKKT-------------LDIGGQALHAGIIGFEHPVTHEYIEKSTALPEDFEQ 295 Query: 308 LIEVMRADFE 317 L+ +R + Sbjct: 296 LLSELRRSDK 305 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 116/319 (36%), Positives = 163/319 (51%), Gaps = 22/319 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q V GQR+D+ L+ SRS ++ + + VL NGK K K+ G+ + Sbjct: 3 QREYIVEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAK-SLKLKAGDII 61 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP- 124 + + PQ+IPLDI+YED ++++NKP+ +VVHP GNPDGT++NALL + Sbjct: 62 LLEIPDAKPIEAVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLWHCKG 121 Query: 125 ---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 I R GIVHR+DKDT+GL+VVAK L + + + R Y + G Sbjct: 122 SLSGIGGEIRPGIVHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQ 181 Query: 182 G-GTVDEPISRHPTKRTHMAVH----PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G V+ + R T R MAV+ P K A T Y+++E T L RL+TGRTHQI Sbjct: 182 DEGFVESNLGRSKTDRKKMAVYPASEPHTKYAYTGYKVLERLGEFTMLECRLKTGRTHQI 241 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMA I HP+ GDPVYG + + Q LHA L HPI+G + Sbjct: 242 RVHMASIHHPVAGDPVYGPH------------NCITSLHGQCLHAKTLGFIHPITGEHLR 289 Query: 297 WHAPIPQDMVELIEVMRAD 315 + + +P + +R Sbjct: 290 FDSELPDYFTRFLTTLRQR 308 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 130/345 (37%), Positives = 180/345 (52%), Gaps = 32/345 (9%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPD---------YSRSRIKEWILDQRVLVNGK-- 50 A+ TV+ G RLD+ L E D SR+R+++ I +V K Sbjct: 130 AEAETRAVTVTAEDAGARLDKYLTEALGDKGEGDAPATLSRARMRQLIEQGQVSREEKAG 189 Query: 51 ---VCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPG 107 + P +V GE+++++ A+ Q IPL+IVYED D+I++ KP LVVHP Sbjct: 190 APKLLTDPSYRVKAGERLSVSVPPPTPAKPAGQAIPLEIVYEDADLIVVMKPAGLVVHPA 249 Query: 108 AGNPDGTVLNALLHYYPP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL- 162 GNPD T++NAL+ + I R GIVHRLDK+T+GLMVVAKT A L Sbjct: 250 PGNPDMTLVNALVAHCGETLSGIGGEKRPGIVHRLDKETSGLMVVAKTDRAHQGLSAQFA 309 Query: 163 ---QRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPM------GKPAVTHY 212 + ++TR Y A+ G T GTVD I+R R+ MA G+ A+THY Sbjct: 310 AHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSSHNRSKMATVRDRGEETGGRIAITHY 369 Query: 213 RIMEHFRV--HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG-GRPRPPKGASEAFIS 269 + + + RLETGRTHQIRVHM + HPL+GD YG G S + Sbjct: 370 TVKTDYADGLVAEVECRLETGRTHQIRVHMTALGHPLLGDATYGTGMKSRKSKLSPEAQA 429 Query: 270 TLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 L + +RQALHA L HP++G +M + AP+P+DM EL+ + Sbjct: 430 ALERLNRQALHAHHLGFEHPVAGEKMSFDAPLPEDMQELVRALEG 474 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 145/312 (46%), Positives = 186/312 (59%), Gaps = 20/312 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + ++ + G RLD+ L+ + P YSRSR+++WI V V+G+V + K V G E+V Sbjct: 38 IELDLNPDVCGVRLDKVLSTLVPQYSRSRLQQWIDGGHVSVDGEVA-RAKMTVYGDEKVV 96 Query: 67 INA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 I E+ F+P+ + L IV+ED ++++INKP LVVHP AGN GT+LN LLHY P Sbjct: 97 IYPQPAPEDEAFKPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLLHYLPS 156 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 I+ VPRAGIVHRLDKDT+GLMVVAKT+ A T LV LQ R + REY A+ G G + Sbjct: 157 ISGVPRAGIVHRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTPNITGKI 216 Query: 186 DEPISRHPTKRTHMAVHPM--GKPAVTHYRIMEH----FRVHTRLRLRLETGRTHQIRVH 239 D I RH R MAV KPAVTH++ + R + + RLETGRTHQIRVH Sbjct: 217 DASIGRHARDRIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRTHQIRVH 276 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M I LVGD +YG + F RQALHA L L HP+SG +EW + Sbjct: 277 MQSIGFALVGDGLYGKQHLTTV------------FPRQALHARRLGLIHPVSGEAVEWSS 324 Query: 300 PIPQDMVELIEV 311 +PQD ELI Sbjct: 325 ELPQDFAELIAR 336 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 120/322 (37%), Positives = 178/322 (55%), Gaps = 15/322 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + TV G R+D L ++P+Y+R + I + VLVNG K ++ ++V+ Sbjct: 17 IEITVEARAHGWRIDHYLCRLYPNYTRVLFQTAIKQEAVLVNGLPV-KAARRMRVNDRVS 75 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY--- 123 + + R P+DIP+DIVYED+ I IINKP D++VHPG GN GT+ AL +++ Sbjct: 76 VRLPELPDNRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQYHFDQL 135 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AG 182 +A R GIVHRLD++T+G+MVVAK +L ++R++ +EY A+ G M Sbjct: 136 SDVAGQYRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGRMEFDT 195 Query: 183 GTVDEPISRHPTKRTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +D + HP R M V G + A T+Y ++E ++ T +RL+ TGRTHQ+RVH Sbjct: 196 DYIDTFMCVHPRAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVRLKPRTGRTHQLRVH 255 Query: 240 MAHITHPLVGDPVYGGRPRPP-------KGASEAFISTLRKFDRQALHATMLRLYHPISG 292 M HI H +V D VYGG A A + + +RQALHA L +HP SG Sbjct: 256 MQHIGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEFFHPQSG 315 Query: 293 IEMEWHAPIPQDMVELIEVMRA 314 M++ AP+P+DM + + Sbjct: 316 KPMKFEAPLPEDMQNTLAALDQ 337 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 134/335 (40%), Positives = 175/335 (52%), Gaps = 26/335 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q+ T GQRLD L SRSR K I + V V G V P+ V G Sbjct: 3 QIVITSEAADAGQRLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKGLVY 62 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 A+N A E + IPL+I++ED ++I+NK + VHP G+ GT++NALLH+ Sbjct: 63 AVNMPPPVPAMPEAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNALLHHCQG 122 Query: 126 I----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 V R GIVHRLDK T+G+MV AKT A T L +R +I R Y AV G Sbjct: 123 QLSGIGGVERPGIVHRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVYRAVTRGAPRP 182 Query: 181 AGGTVDEPISRHPTKRTHMAVH-----PMGKPAVTHYRIMEHFR---------VHTRLRL 226 GT++ I+R + R M+VH P + AVTHY+ +E F L Sbjct: 183 LSGTIEAAIARSESDRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRATRLPAAALLEC 242 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGG-------RPRPPKGASEAFISTLRKFDRQAL 279 RLETGRTHQIRVHMAH PL+GDPVYG + + + ++ R F RQAL Sbjct: 243 RLETGRTHQIRVHMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALAAARAFSRQAL 302 Query: 280 HATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 HA +L HPI+G + + AP+P+DM LI +R Sbjct: 303 HAAVLGFVHPITGETLRYEAPLPEDMTGLIAALRK 337 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 174/307 (56%), Gaps = 20/307 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 QRLD+ L SR+ I+ W+ + VNG+V K K G++V I + E+ Sbjct: 16 QRLDKVLTGEL-GLSRTTIQSWLKAGLISVNGEVV-KSNYKAQSGDEVTILQKEEDVITI 73 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV-----PRA 132 +P++IPLDIV+ED+ +I++NKP +VVHP G+ GT++NALL++ ++D R Sbjct: 74 QPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDSTSEEIYRP 133 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISR 191 G+VHR+DKDT+GL+V+AK +L E + ++ REY A+ GH G VD P+SR Sbjct: 134 GLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGVVDAPLSR 193 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDP 251 H T R V GK A+TH+ +++ F ++ + RLETGRTHQIR HM I HP+V DP Sbjct: 194 HQTNRLKRVVEKGGKNAITHFEVLDSFSDYSLVSCRLETGRTHQIRAHMEFIKHPIVNDP 253 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 +Y + + Q LHA L HP++G + + P++ E I++ Sbjct: 254 LYHPKGKNATEFG------------QFLHARTLSFTHPLTGETLNFQVEPPKEFAEFIQL 301 Query: 312 MRADFEE 318 + FE+ Sbjct: 302 NKGHFED 308 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 15/306 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L+ V E+ G RLD L+ SRS + I + V V+ KP KV G V Sbjct: 20 LSFPVGEDGEGHRLDFVLSREI-GVSRSYASKLIKEGMVQVSWSPRVKPSLKVRVGGTVT 78 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-- 124 EE EPQD+P +VY+D+D+++++KP LVVHP G+ GT+++ LL+ YP Sbjct: 79 AQLPPSEELELEPQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLLYRYPDL 138 Query: 125 -PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 + V R GIVHRLD T+GLMVVA+ A LV + + R + + Y A+A G + G Sbjct: 139 MELNGVKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAGTLRGEG 198 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +V PI R P R MA P G+ A+T YR++ ++ + +++TGRTHQIRVHM + Sbjct: 199 SVSLPIGRDPDNRKRMACVPWGREALTRYRVIWSRGGYSLVACQIKTGRTHQIRVHMRSL 258 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +YGG R LH+ L HP +G M + P+P Sbjct: 259 GHPLVGDRIYGG-----------PCPEGFPLGRVFLHSWRLEFDHPRTGAPMSFICPLPP 307 Query: 304 DMVELI 309 D+V I Sbjct: 308 DLVRFI 313 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 116/316 (36%), Positives = 171/316 (54%), Gaps = 8/316 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCD-KPKEKVLGGEQV 65 + V E + RLDQ LA YSR +++ I VL+NG K +V G++V Sbjct: 37 IELVVEEREADGRLDQFLALRLHRYSRMQLRRVIDAGGVLLNGSRAKVKVAYRVSTGDRV 96 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 +I A P+ IPLDI++EDE +I +NKP +VVHP G+ GT+ +AL ++ Sbjct: 97 SIVLPEMPSAGPNPEKIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFHFQQ 156 Query: 126 I---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 + R GIVHRLD+DT+G+++VAKT P L R +EY A+ G Sbjct: 157 LSTVGGQHRPGIVHRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGVPDRD 216 Query: 183 G-TVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 V +PI HP R MA+ P + A T + ++E F H + +TGRTHQIRV Sbjct: 217 RDVVSQPIGIHPFHREKMAIRPGHSTSRDAETMFHVLERFAQHAAVECLPKTGRTHQIRV 276 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H+AH+ P++ D +YGGR +G ST +RQALHA L + HP +G + Sbjct: 277 HLAHVRTPVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGERLTIE 336 Query: 299 APIPQDMVELIEVMRA 314 AP+P D+ +++++R+ Sbjct: 337 APLPADLQRVLDLLRS 352 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 378 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 135/309 (43%), Positives = 182/309 (58%), Gaps = 16/309 (5%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI---NA 69 E Q G RLD+ L ++ P SRS I++ I D V VNG+ K K+ G E + + N Sbjct: 9 EGQAG-RLDKVLTDLLPGESRSTIQKIIKDGLVSVNGQ-EQKANFKLKGDETLLVARRNL 66 Query: 70 EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY----PP 125 +EE++ EP+ + LDI+YEDEDI++INKP LVVHP G+ GT++N LLHY Sbjct: 67 AVEEDSLPEPEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLST 126 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 +D R GIVHR+DKDT+GL+VVAK A L + L ++ R Y A+ G + GT Sbjct: 127 GSDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGT 186 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 ++ P+ R P R V GK A+T +++ME+F T L L LETGRTHQIRVH+ I Sbjct: 187 IEAPLQRDPANRLRWTVAKEGKYALTRFQVMENFENATLLDLELETGRTHQIRVHLEFIG 246 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 HPLVGDPVY KG S + Q LHA L+L HP SG +E+ AP+P+ Sbjct: 247 HPLVGDPVY------RKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPRR 300 Query: 305 MVELIEVMR 313 E ++ +R Sbjct: 301 FEEALDQLR 309 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 133/307 (43%), Positives = 174/307 (56%), Gaps = 18/307 (5%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 QRLD L+ + SRSR+++ I VL+N +VC K V G+++ + + + Sbjct: 33 QRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRICVEIPSLQPLKL 92 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPRAGI 134 +DIPLDI+YEDE ++I+NKP LVVHP G+ DGT++NALL + P I V R GI Sbjct: 93 VAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVNALLAHCANLPGIGGVQRPGI 152 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRHP 193 VHRLDKDTTG + +AKT A L LQ + REY V G G ++ PISRHP Sbjct: 153 VHRLDKDTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHP 212 Query: 194 TKRTHMAVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 R MA+ P G+ A+TH++I E +T + +LETGRTHQIRVH A I HP+VGD Sbjct: 213 QDRKKMAIVPTEQGGRTAITHWQIRERLSNYTLIHFQLETGRTHQIRVHSAKIGHPIVGD 272 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 VYG S ALHA L+L HPISG ++ A PQ L+E Sbjct: 273 SVYGAGR-----------SVGVNLAGHALHAWQLKLQHPISGDWIQVTASPPQTFTTLLE 321 Query: 311 VMRADFE 317 V+R E Sbjct: 322 VLRRRSE 328 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 124/323 (38%), Positives = 180/323 (55%), Gaps = 22/323 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + + + +VS NQ G RLDQ LA PD SR+ I + VLV+ + K ++ Sbjct: 14 SDQQKFEFSVSYNQRGTRLDQFLAFSLPDVSRALITLSNKKELVLVDDE-VKKSSYRLKE 72 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 GE V EPQ + + +YED+ +++++KP +VVHPG GN +GT+++ LL+ Sbjct: 73 GETVTCALWQAPPLSLEPQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLY 132 Query: 122 YYPPIADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + I V R GIVHRLDKDT+G MVVAK + LV+S + R++ + Y A+ G Sbjct: 133 HCREIGGVGDAIRPGIVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGI 192 Query: 179 MTA-GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF----RVHTRLRLRLETGR 232 G + PI RH R MA+ GK A T+++++E F ++ LR+ +ETGR Sbjct: 193 PKKYEGRIVAPIGRHSVHRQKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETGR 252 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIRVHM+ I P+ GD VYG + + P F RQ LHA+ LRL HP++G Sbjct: 253 THQIRVHMSSIGCPIAGDQVYGSKRQNPA------------FARQMLHASRLRLPHPVTG 300 Query: 293 IEMEWHAPIPQDMVELIEVMRAD 315 M + AP+ QD E++E M Sbjct: 301 RTMSFTAPLWQDFQEVLEDMDWS 323 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 117/310 (37%), Positives = 172/310 (55%), Gaps = 18/310 (5%) Query: 8 TATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + E + G RLD+ LA+ + + SR+ + I VL+NG+ K + K G+ V Sbjct: 11 SFIIQEMEAGIRLDKVLADRYKSNGSRTYFQMLIEKGLVLLNGEPVKK-RFKPNVGDDVE 69 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP-- 124 + E P+ IPL+I+YEDE ++IINKP +VVHP GN GT +NALL++ Sbjct: 70 LFFAAAPEIDLIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGYS 129 Query: 125 ---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 D R GIVHRLDK+T+G++V AKT+ Q +L+E R++ +EY A+ +G+ Sbjct: 130 LSDASVDSIRPGIVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAICLGN-PG 188 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 ++ PI RHP R M V GK A+T +E +L L TGRTHQIRVH+ Sbjct: 189 NCELNWPIGRHPIHRKQMTVREDGKEALTFCETLEVGNEICLAKLILSTGRTHQIRVHLK 248 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H HP++GD +YG + ++ + +RQ LHA L HPI+ ++E AP+ Sbjct: 249 HKGHPILGDSIYGSK----------QVNMRYRAERQMLHARKLAFIHPITQQKIEVEAPL 298 Query: 302 PQDMVELIEV 311 P DM E + Sbjct: 299 PADMEECLRK 308 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 128/323 (39%), Positives = 182/323 (56%), Gaps = 23/323 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD----YSRSRIKEWILDQRVLVNGKVCDKPK 56 M + + VS G+RLD+ L + + SR++++ W+ D + K Sbjct: 1 MRPAIHVQYEVSAEDAGERLDRWLTDRLQEDDIEVSRTQVQRWLDDGFIRRARPGRLKAS 60 Query: 57 EKVLGGEQVAINAEIEEEARFEPQD-IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 + V G+ ++ EE P D +P + YED+D+I+++KPR +VVHPGAG+ GT+ Sbjct: 61 DPVEAGDLYEVDVPEEEPLELVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTL 120 Query: 116 LNALLHY---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 +N LL +A R G+VHR+DKDT+GL+V AK+ A LVE+ + ++ REY Sbjct: 121 VNGLLARGTPLCTLAGALRPGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYV 180 Query: 173 AVAIGHMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETG 231 A+A G M GT+D PI+R P R MAV GK AVTH+ ++E F ++ LRLRLETG Sbjct: 181 AIAHGRMPHREGTIDMPIARDPADRQRMAVRQGGKRAVTHFEVLESFAKYSYLRLRLETG 240 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH+A I HP+ GDPVYG R P D QALHA L HP Sbjct: 241 RTHQIRVHLAAIGHPIAGDPVYGPRHTLP-------------IDGQALHARTLGFTHP-D 286 Query: 292 GIEMEWHAPIPQDMVELIEVMRA 314 G + + + +P DM L++ +R Sbjct: 287 GRRLRFESAVPSDMARLLDGLRQ 309 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 117/336 (34%), Positives = 179/336 (53%), Gaps = 16/336 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEK 58 M ++++ T+ E QRLD+ LAE+ YSR+ I+ I + R+LVN K Sbjct: 8 MKDKLKVIYTLQEM---QRLDKFLAELKIQELYSRTFIEHLIEEDRILVNLTPVKK-SYL 63 Query: 59 VLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 + G++V IN E PQDIPLD+VYEDE + IINK ++VHPG GNP+GT++NA Sbjct: 64 LKEGDEVIINLPEPEPMNVLPQDIPLDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVNA 123 Query: 119 LLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 174 +L+ + + R GIVHRLD+ T+GL+++AK +L + RREI + Y A+ Sbjct: 124 ILYRFGENLSSGKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFAI 183 Query: 175 AIGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 G G ++ ++R + V G+ A+THY+ ++ + + + TGR Sbjct: 184 TTGIPEPEKGEIETYLARSNKNPRTICVTNEGRYALTHYKTIKTWHYFALVEINPATGRM 243 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRK-----FDRQALHATMLRLYH 288 HQIRVH AHI +P++GD +Y R + + + RQALH+ L +H Sbjct: 244 HQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLEFFH 303 Query: 289 PISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVD 324 PI+G + APIP D+ + + +F D D Sbjct: 304 PITGYPISVSAPIPDDIQYTLNWLDNNFSIDTDTSD 339 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 14/324 (4%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M V EN +R+DQ +A+ +P SRS++ + I + + +NG++ P KV Sbjct: 1 MNN---YNFVVDENFDQKRIDQVVAKQYPKISRSKVSKIIKTELLKLNGQILKDPSHKVK 57 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+Q+ IEE P+ + L+I++ED+DIIII+KP +VVHPGAGN + T++N LL Sbjct: 58 SGDQIEFENLIEETINLIPKKMDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLL 117 Query: 121 HYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 ++ R GIVHR+DKDT+GL+VVAK A + + + I R Y Sbjct: 118 YHCKNNLSGMNGEDRPGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVY 177 Query: 177 GHM-TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFR-----VHTRLRLRLE 229 G + G ++ I R+ T R M+ GK A+T+Y +E F+ + ++ LE Sbjct: 178 GILRPLHGKIETLIGRNKTNRQKMSADVIRGKDAITNYETLEVFKGNKIPDISLVKCILE 237 Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHP 289 TGRTHQIRVHM+H +P++GD YG + + +G + F L+ RQALHA L HP Sbjct: 238 TGRTHQIRVHMSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHP 297 Query: 290 ISGIEMEWHAPIPQDMVELIEVMR 313 + E+ + + +P D+ +L + Sbjct: 298 TTNEEVFFASELPDDLNKLKNRLE 321 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 124/322 (38%), Positives = 170/322 (52%), Gaps = 15/322 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q R+D+ L + + +RSRI++ + VNG+ K ++ G+ V Sbjct: 32 HFRTVADPGQTLIRIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPV-KSNYRIKPGDVV 90 Query: 66 AINAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E P+DIPLDIVYED+ +++INKP LVVHPG GN GT++NAL +Y Sbjct: 91 TLELLRPRRELEIIPEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLR 150 Query: 125 PIAD----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + P G+VHR+DKDT+GL+VVAK A++ L + + R Y A+ G Sbjct: 151 EDPEYDPMDPSLGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFD 210 Query: 181 -AGGTVDEPISRHPTKRTHMAVHPM----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 GT+ I R R MAV P GKPAVTHY+++E + + RLETGRTHQ Sbjct: 211 YPIGTITGNIGRDLKDRLQMAVFPPDGDIGKPAVTHYQVLEELAYVSWIECRLETGRTHQ 270 Query: 236 IRVHMAHITHPLVGDPVYGG----RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 IR HM HI H L D YGG R + L RQALHA L HP++ Sbjct: 271 IRAHMKHIGHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVT 330 Query: 292 GIEMEWHAPIPQDMVELIEVMR 313 G+EM++ + IP D+ L+E R Sbjct: 331 GVEMQFDSDIPADLTTLLERWR 352 >UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGU8_SALAR Length = 318 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 246/270 (91%), Positives = 258/270 (95%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL+QRVLVNG++CDKPKEKVL Sbjct: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVL 60 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGE+VAI+AEI+EE RFE QDIPLDIVYED+DI++INKPRDLVVHPGAGNPDGTVLNALL Sbjct: 61 GGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALL 120 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ REITREYEAVAIGHMT Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMT 180 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 AGGTV+EPISRHPTKRTHM+VHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM Sbjct: 181 AGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFIST 270 AHITHPLVGD VYGGRPRPPK + Sbjct: 241 AHITHPLVGDQVYGGRPRPPKAHRKRLFPR 270 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 116/320 (36%), Positives = 171/320 (53%), Gaps = 11/320 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 L V G RLDQ + D+SRS ++ I VL+NG+ KP KV +++ Sbjct: 31 LDLLVMVKSEGMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVLKPSYKVRKNDRL 90 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + P+DIPLDI+Y+DE + ++NKP D+VVHP GN GT++NAL ++ Sbjct: 91 HVTMPEPTHEIPVPEDIPLDILYQDEWLALVNKPADMVVHPAKGNWSGTLVNALQWHFRE 150 Query: 126 I----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 A RAGIVHRLDKDT+G+++VAK L + R++ +EY A+A G + Sbjct: 151 HLSTGAGHLRAGIVHRLDKDTSGVILVAKDDLTHRDLAMQFESRKVFKEYVAIAAGELER 210 Query: 182 GGT-VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 ++ + HP R M V P K A+++Y ++E FR T ++++ TGRTHQIRV Sbjct: 211 DSDYIEGALKMHPYDRLKMIVSTDPDAKHALSYYEVLERFRGFTLVKVQPRTGRTHQIRV 270 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLR---KFDRQALHATMLRLYHPISGIEM 295 H+ H+ ++ D +YGGR + RQALHA LR HP +G + Sbjct: 271 HLLHVGCAVLADKIYGGRAQVKLSEIAPGTPPAEDEVLLGRQALHAFRLRFQHPRTGQWI 330 Query: 296 EWHAPIPQDMVELIEVMRAD 315 E AP+P DM ++ +R Sbjct: 331 EAEAPLPPDMRRTLDALRQH 350 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 118/311 (37%), Positives = 164/311 (52%), Gaps = 20/311 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + T GQR+DQ L PD+SRSRI+EWI RV VNG K + + V Sbjct: 1 MRFTADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAV-KTSYTLRAADAVE 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + +DIPL I+YED D++ I+KP +VVH GAG GT++NALLH + + Sbjct: 60 VEPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLHRFATL 119 Query: 127 ---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 R GIVHRLD+ T+G+++VAK A +L REI + Y A+ G + Sbjct: 120 SGVGGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPET 179 Query: 183 GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 G ++ PI+R P R M G+ A + YR++ F T L +R+ TGRTHQIRVH+A Sbjct: 180 GRIERPIARDPVHRARMTARLAEGRAAWSEYRVLRRFPDFTLLEVRIGTGRTHQIRVHLA 239 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 I HP+VGD +YG +P R LHA +R + P SG EM +P+ Sbjct: 240 SIRHPVVGDTLYGAPAQP-------------LLGRYFLHAHRIRFHLP-SGREMLIESPL 285 Query: 302 PQDMVELIEVM 312 P D+ + + Sbjct: 286 PPDLEAWLGTL 296 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 168/319 (52%), Gaps = 8/319 (2%) Query: 1 MAQRVQ--LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWI-LDQRVLVNGKVCDKPKE 57 M+ + V + G + L SR + ++ V++NG+ Sbjct: 1 MSSEYYDPIEYQVPAAEDGWTVKSVLQRRM-GISRKLLSRIKLTERGVMLNGERVY-ISV 58 Query: 58 KVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 V G+ V+++ E E P+ IP DIVYEDE ++I+NK L+VHP G+ GT+ N Sbjct: 59 PVKAGDTVSVSLEKETSTDILPEPIPFDIVYEDEALLIVNKAAGLIVHPTHGHYTGTLAN 118 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +++Y+ + R VHRLD++T+GL+ +AK + E L E+T++Y A+ G Sbjct: 119 GVVYYWQEKGEKFRFRPVHRLDQETSGLIAIAKNAYVHQHISEQLIAGEVTKKYTALVHG 178 Query: 178 HMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 GT+D PI R P + V P G P++T+Y++ E + R+ LRL TGRTHQI Sbjct: 179 CPAVPEGTIDGPIDRDPAEPHRRIVTPSGYPSLTYYKVAEAYGDGARVELRLGTGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYG--GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 RVHM I HPL+GD YG G P A E RQALHA+ L HP++G Sbjct: 239 RVHMTSIGHPLIGDKFYGMPGLAELPAPARERIARLDAAIGRQALHASELGFRHPLTGEA 298 Query: 295 MEWHAPIPQDMVELIEVMR 313 + + + +P+DM++L ++R Sbjct: 299 LTFKSELPEDMLKLEAMLR 317 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 173/326 (53%), Gaps = 11/326 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L TV G R+D L+ ++P++SR + I + +VLVNG K ++ + + Sbjct: 15 LVLTVEARAHGWRIDHYLSRLYPNFSRVAFQRTIEEGKVLVNGLPV-KISRRLRVNDVIE 73 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY--- 123 + E + R +P+DIPLDI+Y+DE + +INK +++VHPG GN GT+ AL ++ Sbjct: 74 FSLPAEPDQRVQPEDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGTLAGALQFHFDSL 133 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 +A RAGIVHRLD+DT+G++VVAK L + R + +EY A+ G M Sbjct: 134 SDVAGQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIVWGEMQFDA 193 Query: 184 T-VDEPISRHPTKRTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 V+ + R M V P G + A T Y + + FR T ++L+ +TGRTHQ+RVH Sbjct: 194 DYVETYVRVSFRNRERMMVCPPGDNARQAATFYEVQQRFRGFTYVKLQPQTGRTHQLRVH 253 Query: 240 MAHITHPLVGDPVYGGRPRPPKG---ASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 M H+ HP++ D +Y G+ + DRQALHA L HP++ M Sbjct: 254 MHHLGHPIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFNHPVTKKRMV 313 Query: 297 WHAPIPQDMVELIEVMRADFEEHKDE 322 + AP+P D + ++ ++ + K Sbjct: 314 FEAPLPADFQKTLDTLKTHAIKPKKS 339 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 113/325 (34%), Positives = 178/325 (54%), Gaps = 14/325 (4%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 + + L VS G+R D+ +A SR +I+ I D ++L++ VC PK K+ Sbjct: 36 SGKTLLDCMVSPQAAGERADRFIAAALAGDAISRGKIQRAISDGQLLIDNTVCTSPKTKL 95 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+ + + E A P++ L+++Y D +++INKP L VHP P+GT+++ L Sbjct: 96 KSGQHIVFSMEAP-AACVSPEEGELEVLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRL 154 Query: 120 LHYYPPI--ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 LH++P + + R GIVHR+DKDT+GL+++A T A+ L ++ R I +EY A+ G Sbjct: 155 LHHFPELEAQEGFRPGIVHRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKG 214 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEH------FRVHTRLRLRLET 230 G +D P+ RHPT +T MAV G+ A++ +R++ T + +R+ T Sbjct: 215 IPEGDSGEIDAPVGRHPTHKTRMAVVRGGREALSTWRVLLADPHGGGGTGWTLVAVRIHT 274 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVHM H HPL GD +YGG P + + ++ RQ LHA + HP+ Sbjct: 275 GRTHQIRVHMQHTGHPLWGDALYGGMPGREELQTTPALAQTAT--RQMLHAWKISFDHPV 332 Query: 291 SGIEMEWHAPIPQDMVELIEVMRAD 315 +G M++ P P D LI + + Sbjct: 333 TGAPMQFTLPPPADFGTLIRDLGSR 357 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 186/320 (58%), Gaps = 8/320 (2%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT V + +RLD L+ PD SRS++++ I + RV VNG K ++ G+ +A Sbjct: 10 LTFHVDVEEKLRRLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPV-KASYEIRSGDCIA 68 Query: 67 INAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY--- 122 + E +P+ +PL+I++ED+D++++NK ++VHPGAG+ +GT+++ LL + Sbjct: 69 VWLPEAVGEDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHCSR 128 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-A 181 R GIVHRLD+ T+G ++VAK+ A L+ + E+ +EY A+ G M A Sbjct: 129 LASRGAPRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMAGA 188 Query: 182 GGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G + + RHP R MAV G+ AV+ +++ + + LR+ ++TGRTHQIRVH+ Sbjct: 189 SGEIRTGMGRHPVDRKRMAVLEKGGREAVSQWKVAVAWGEVSLLRVVIKTGRTHQIRVHL 248 Query: 241 AHITHPLVGDPVY-GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 +H+ HP+VGD Y GG+ + S+ L + DRQ LHA L HP+SG ++ + A Sbjct: 249 SHMQHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLSFTA 308 Query: 300 PIPQDMVELIEVMRADFEEH 319 P+P D L+E +R ++ Sbjct: 309 PLPPDFAGLLERIRISLQKE 328 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 121/327 (37%), Positives = 172/327 (52%), Gaps = 22/327 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCD---- 53 +A+ V+ ++ G+RLD LA +RSR++ I RV V + Sbjct: 3 LAETSSFAFVVAPHEAGRRLDLVLATRAAGSAELTRSRLQSLIRQGRVRVESAGVEAGPL 62 Query: 54 KPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG 113 KP + G++V + E +++ +YEDEDI+++ KP LVVHP G+ G Sbjct: 63 KPGMLLKAGDRVDLQVPPPEATELVAEEVEFTPLYEDEDILVLVKPPGLVVHPADGHRQG 122 Query: 114 TVLNALLHYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITRE 170 T+++ LLH+ I+ R GIVHRLDKDT+G +VVAK A LV+ + RE+ + Sbjct: 123 TLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKT 182 Query: 171 YEAVAIGHMTAG-GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHF-RVHTRLRLR 227 Y+A+ G + G V PI RHP R MAV G+ AVTH+R+ + F +T + L Sbjct: 183 YQALLRGILAEDTGQVVLPIGRHPVHRKKMAVRREGGREAVTHWRVRQRFSAGYTLVELL 242 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 LETGRTHQIRVHMA + HPL GD +YG P DRQ LHA L Sbjct: 243 LETGRTHQIRVHMAALGHPLAGDRLYGRNPE---------KDMPYGIDRQWLHAWRLAFN 293 Query: 288 HPISGIEMEWHAPIPQDMVELIEVMRA 314 HP SG + + AP+ D+ ++ +R Sbjct: 294 HPRSGRRLTFTAPLWVDLQASLDRLRE 320 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 177/331 (53%), Gaps = 18/331 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + + V + Q R+D+ L + + SR++I++ ++LVN + K K+ Sbjct: 1 MSIK-KFKFFVEKYQKTIRIDKFLRKSIQNISRNQIQKATNSGKILVN-QCIIKKNYKIK 58 Query: 61 GGEQVA--INAEI---EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 + V I E ++IPL+I+YEDEDI++INK +VVHPG GN GT+ Sbjct: 59 PFDLVEAEIYYPPILDSEYKNIIAENIPLNILYEDEDILVINKAAGMVVHPGFGNEKGTL 118 Query: 116 LNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 ++ + +++ + R G+VHR+DKDTTGL+V+AK AQ L + + I R+Y A+ Sbjct: 119 IHGIKYHFKNNHQLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALV 178 Query: 176 IGHM-TAGGTVDEPISRHPTKRTHMAVHP----MGKPAVTHYRIMEHFRVHTRLRLRLET 230 G++ GT+ I R P R M + + +VTHY+++E F+ T + LET Sbjct: 179 WGNIQKQEGTISGFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFKYLTYVSCNLET 238 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGG-----RPRPPKGASEAFISTLRKFDRQALHATMLR 285 G+THQIRVH ++ HPL D YGG + K + + F +L RQALHA L Sbjct: 239 GKTHQIRVHFKYLGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLS 298 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMRADF 316 HP + + IP+D ++++ +R + Sbjct: 299 FIHPK-NRKCHFTCSIPEDFKKVLQKLRNQY 328 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 128/303 (42%), Positives = 172/303 (56%), Gaps = 19/303 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE-AR 76 RLD+ L + SR+RI+++I V VNGK K K + G+QV + E Sbjct: 40 MRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGK-QGKAKTPLREGDQVQLWMPPPEPLPY 98 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IADVPRAG 133 +PQ + LD+++EDE II++NK L VHP GN DGT++N LLH+ P I+ R G Sbjct: 99 LKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPG 158 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPISRH 192 IVHRLDKDT+G +VVAK+ A +L +Q+R +REY AV G GT+ + RH Sbjct: 159 IVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTIIGAVGRH 218 Query: 193 PTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 P R AV G+ A TH+ ++E F ++ LR +L+TGRTHQIRVH AHI HP+VGD Sbjct: 219 PVDRKKYAVVSDESGRYARTHWTLIERFGDYSLLRFKLDTGRTHQIRVHCAHINHPVVGD 278 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 P Y QALHA L L HPI+G M + AP+P M +L+ Sbjct: 279 PTY-----------SRCRKLPLDLPGQALHAVQLGLDHPITGERMVFEAPLPPVMEKLLL 327 Query: 311 VMR 313 V+R Sbjct: 328 VLR 330 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 128/320 (40%), Positives = 180/320 (56%), Gaps = 16/320 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 E G RLD L+E D SRS+ K I + V+VN K + G+ V + Sbjct: 15 ELIPKEKDEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWV-KASYSITSGDVVKV 73 Query: 68 NAE-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + + I+ E PQ IPLDIVYEDE ++++NKPR++VVHPGAGN T++NALL++ + Sbjct: 74 DTQLIQSEITLIPQSIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQNL 133 Query: 127 ADV---PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 +D R GIVHRLDKDT+GL+VVAK L E ++ R + R Y A+ IG Sbjct: 134 SDGTSYERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKKK 193 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV---HTRLRLRLETGRTHQIRVH 239 T+D PI R P R MAV GK A+T ++ F+ + L+ LETGRTHQIRVH Sbjct: 194 ATIDLPIGRDPRNRKKMAVVHGGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQIRVH 253 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++H+ +PL+GDPVY G+ + + + QALH+ L HP+ M + A Sbjct: 254 LSHLGYPLLGDPVYRGK-------TGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRA 306 Query: 300 PIPQDMVELIEVMRADFEEH 319 P+P DM+ LI + + + Sbjct: 307 PLPSDMMNLISKLTRSDKTN 326 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 115/321 (35%), Positives = 174/321 (54%), Gaps = 11/321 (3%) Query: 1 MAQRVQ-LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M + + L+ V E +RLDQ L+ ++P+YSRS ++ I D V +GK KP KV Sbjct: 1 MNHKDEILSFMVDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKV 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+++ + E +P++IP+DI++EDEDI ++ KP +VVHP G+ GT++NAL Sbjct: 61 RKGQEITLVIPPPETLEIKPENIPVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNAL 120 Query: 120 LHYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 L+++ I RAGIVHRLDKDT GLM++AK+ A L + Q R + + Y AV Sbjct: 121 LYHFRNISEYGGKERAGIVHRLDKDTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVT 180 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAVHPMG-KPAVTHYRIMEHF--RVHTRLRLRLETGR 232 G + G +D PI R R M + A+T Y + T + ++L TGR Sbjct: 181 GIVQNDHGFIDLPIGRSIYNRKKMGTEATNLRDALTEYWVKNRSEKENLTVVDIKLHTGR 240 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIRVH + I HPL D VYG + + IS + AL A + HP +G Sbjct: 241 THQIRVHFSAIGHPLFNDKVYGFKKSQLRSEKMRSISDQTLY--HALLAYRIAFDHPRTG 298 Query: 293 IEMEWH-APIPQDMVELIEVM 312 +++ +P+ + ++IE + Sbjct: 299 EKIDITLQKLPEHISKVIEAI 319 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 148/314 (47%), Positives = 211/314 (67%), Gaps = 2/314 (0%) Query: 3 QRVQLTATVS-ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 ++ +L+A V G+RLDQ L+++F YSRS +K+WI+ V +NGK+ ++P +K+LG Sbjct: 2 EKKELSACVPFMGFSGKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILG 61 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 GE++ I + E+ PQ+I L+ +YED +I+IINKP LVVHPGAGN DGT+LNALL+ Sbjct: 62 GEKITIYSTDEKLPINLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLY 121 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 Y I+ +PR GI+HRLDKDT+GLMV+AKT+ + +LV L++R+I R+Y+ + G+M + Sbjct: 122 RYTNISSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMIS 181 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GG V+ PI RHP KR M +GK ++THY+I+ F+ HT + RLETGRTHQIRVHM Sbjct: 182 GGIVNYPIMRHPFKRICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHML 241 Query: 242 HITHPLVGDPVYGG-RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 HI +PL+GDP+YGG I RQALHA + HP + M W A Sbjct: 242 HIGYPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSAS 301 Query: 301 IPQDMVELIEVMRA 314 +PQDM +++ ++ Sbjct: 302 LPQDMKDILLYLKK 315 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 127/321 (39%), Positives = 179/321 (55%), Gaps = 22/321 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M Q V L VS G+RLDQ L E +RS +++WI V + K V Sbjct: 1 MNQNVYL---VSVADEGKRLDQFLKER-TGLTRSEVQKWIKAGNVSLLPKKMIHSNYHVS 56 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G++++ E +++ Q+IPLDI+YED D+I+INK R +VVHPGAGN +GT++NALL Sbjct: 57 EGDRISFFWEEKKKQELIGQNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALL 116 Query: 121 HYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 + D R GIVHRLDKDT+G+MV AK+ A L + + + R Y A+ Sbjct: 117 FHCGEQLRSVGDPERPGIVHRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVH 176 Query: 177 GHMTAG-GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 G M G + P+ R R V H G+PAVTH+ ++E+ ++ + +LETGRTH Sbjct: 177 GQMEGDTGVIRLPLGRSTKDRMKWDVLHETGRPAVTHFHVIEYLPHYSWIECKLETGRTH 236 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHMAHI H +V DP+YG + QALH+ L L HPI+G Sbjct: 237 QIRVHMAHIRHAVVNDPLYGWKKDH------------FPIKGQALHSHTLELCHPITGEV 284 Query: 295 MEWHAPIPQDMVELIEVMRAD 315 M + AP+P+DM+ + + R + Sbjct: 285 MHFEAPVPEDMINCLNLARKE 305 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 136/315 (43%), Positives = 189/315 (60%), Gaps = 12/315 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT + E G+RLD+ALA + PD SRSR+++W++ V VNG + + + G+ V Sbjct: 33 LTLRIDERYAGERLDKALAFLIPDVSRSRLQQWVVAGAVTVNGGAV-RARHTLTFGDVVK 91 Query: 67 INA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + + A ++P+ +PL++++ED+ I+++NKP LVVHP AG+ GT+LN LL Y P Sbjct: 92 VTPQPAPDAAAYKPEPMPLEVIFEDDAILVLNKPPKLVVHPAAGHWSGTLLNGLLAYAPT 151 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + DVPRAGIVHRLD DT+GLMVVAKT+ AQT LV LQ R +TREY A+ +G + G + Sbjct: 152 LIDVPRAGIVHRLDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYWALVLGVPSQRGVI 211 Query: 186 DEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVH----TRLRLRLETGRTHQIRVH 239 D I R P V KPA THY ++ + + L RLETGRTHQIRVH Sbjct: 212 DAAIGRDPRNPLRFKVSTTEAAKPARTHYATLDSTKNAGADISWLACRLETGRTHQIRVH 271 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + H+ HPL+GDPVY R + ++FDRQALHA L L HP+S + W Sbjct: 272 LEHVGHPLIGDPVY----RRRLPPRGEPAARWKEFDRQALHACRLALDHPVSRQRLNWFH 327 Query: 300 PIPQDMVELIEVMRA 314 D+ +L+ + Sbjct: 328 SPAADLAQLMHELGF 342 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 123/317 (38%), Positives = 182/317 (57%), Gaps = 16/317 (5%) Query: 9 ATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 +SE+++G+RLD+ LA F YSR+ + I +LVNG K + + G++V + Sbjct: 12 LIISEDEVGERLDKVLARRFNAKYSRTYFQFLIDKHLILVNGIAVKK-RTLLQEGDEVEV 70 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E+ P++IPL I+YEDE +++INKP +VVHP GN GT +NALL+Y + Sbjct: 71 QFLASPESNLMPENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFVNALLYYCQKLP 130 Query: 128 DVP---RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 +P R GIVHRLDK T+GL+V AKT+ Q +L+E R++ + Y A+ IG A G Sbjct: 131 LLPDTIRPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLAICIGR-PADGE 189 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 + PI RHP R MAV P GKPA++ + + + +++ + TGRTHQIRVHM + Sbjct: 190 IQAPIGRHPIHRKQMAVIPTGKPAISFCKTLGWSDKLSFVQIEIATGRTHQIRVHMKYRG 249 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 P++GDP+YG + ++ Q LHA +LR HPIS +E+ P P + Sbjct: 250 SPILGDPLYG----------QISLNQYYSVPHQLLHAAVLRFQHPISLENLEFCTPPPPE 299 Query: 305 MVELIEVMRADFEEHKD 321 MV LI+ + +D Sbjct: 300 MVRLIKKIDPKSPYIRD 316 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 174/319 (54%), Gaps = 11/319 (3%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V E G+R+D+ L + + SR+ +++ I V V G K +V G V Sbjct: 1 MNYIVEEKHNGERIDKFLVGVMENVSRTDVQKLIEAGEVKVGGGKVSK-NFRVETGMAVV 59 Query: 67 IN-AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + +E + EP+DIPL+IVYED+DI++INKPR+LVVHPG G GT+ ALL+++ Sbjct: 60 VEKMIEKESSTLEPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHFKE 119 Query: 126 I----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 R GIVHRLDKDT GLMVVAK A L L+ R + R Y A+ G Sbjct: 120 NLSTVNGPLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPRD 179 Query: 182 -GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GT+D PI R+P R MAV GK + THY + F + T L L+LE+GRTHQIRVH Sbjct: 180 LEGTIDAPIGRNPKNRLKMAVVKGGKESRTHYVAKQFFAIATLLELQLESGRTHQIRVHS 239 Query: 241 AHITHPLVGDPVYGGRP----RPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 + HP+VGDP+Y GR R P L Q L A + L HP + ++ Sbjct: 240 RYTGHPVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRTNKKLT 299 Query: 297 WHAPIPQDMVELIEVMRAD 315 + P+ + ++++++ + Sbjct: 300 FKVPMEEPFANVLKLLKKE 318 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 106/321 (33%), Positives = 174/321 (54%), Gaps = 23/321 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 ++ +SE G+RLD +AE + +R+RI++ I D + VN K KP KV + + Sbjct: 3 KIIFEISEE--GKRLDLYIAER-TELTRTRIQQLIKDGNINVNNKK-SKPSYKVEKNDFI 58 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + E+E P++I + I+YED DI +I+K +VVHP G+ GT++NA++++ Sbjct: 59 EMIIPDEKEIDLVPENINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHIKD 118 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TA 181 I R GIVHRLDKDT+GL+++AK A RL E I + Y A+ G + Sbjct: 119 LSGINGEIRPGIVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKINKE 178 Query: 182 GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G ++ I R P R MAV GK A+T++++++ + +++ ++TGRTHQIRVHM Sbjct: 179 SGKLETLIGRDPKDRKKMAVVKTNGKTAITYFQVLDKNEKFSLVKVNIQTGRTHQIRVHM 238 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 ++ +P++GD VYG + RQ LHA L HP++ M+ + Sbjct: 239 KYLGYPVLGDSVYGRDNKIA--------------GRQMLHAYKLEFLHPVTQKAMKIISE 284 Query: 301 IPQDMVELIEVMRADFEEHKD 321 +PQD + ++ + ++ Sbjct: 285 LPQDFEKALKETGLEMGNFEE 305 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 131/338 (38%), Positives = 171/338 (50%), Gaps = 38/338 (11%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + G+RLD+ L P+ SRSR K I VL++ PK KV+ + Sbjct: 20 SIVIVAPAEFAGERLDKWLPIAAPELSRSRAKAIIEKGDVLLDDTAITSPKHKVIADGRY 79 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY--- 122 I +A P+DIPLD+++EDE +II+NKP LVVHP G+ GT++NALLH+ Sbjct: 80 VILMPPPLDAEPLPEDIPLDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAG 139 Query: 123 -YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 P I V R GIVHRLDKDT+G+MV AKT A T L Q + R Y AV G Sbjct: 140 QLPGIGGVARPGIVHRLDKDTSGVMVAAKTEFAHTGLSSLFQAHFMERAYLAVTRGAPRP 199 Query: 181 AGGTVDEPISRHPTKRTHMAVHPM--------------------GKPAVTHYRIMEHFRV 220 G ++ I+R T R MAV GK A+T+Y+++E F Sbjct: 200 LLGKIETRIARSTTDRKKMAVVRESRLSASAEWHGESEEDYEQKGKHAITNYKVLEQFGR 259 Query: 221 ---------HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG----RPRPPKGASEAF 267 T RLETGRTHQIRVHMAHI PL+GD YG + A E Sbjct: 260 IDATSGLPAATLTECRLETGRTHQIRVHMAHIGAPLLGDQTYGRYRGLKAHGSGPAFETA 319 Query: 268 ISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 ++F RQALHA +L HP++G + + P+DM Sbjct: 320 THACKEFKRQALHAAILGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 123/305 (40%), Positives = 172/305 (56%), Gaps = 19/305 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE-AR 76 RLD+ L P+ SR+RI+++I V VNG + K + G+++ + E Sbjct: 22 MRLDRWLVSQRPEQSRARIQKFIEAGYVRVNGT-TGRAKTPLRHGDEIKLWMPPPEPLPY 80 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IADVPRAG 133 +P+ + LD+++EDE +I+INKP L VHP GN DGT++N LLH+ P I+ R G Sbjct: 81 LQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGISGKLRPG 140 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISRH 192 IVHRLDKDTTG +V+AK+ A +L +Q+R +REY AV G GT+ I RH Sbjct: 141 IVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIVGAIGRH 200 Query: 193 PTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 P R AV G+ A TH+ + E ++ LR +L+TGRTHQIRVH AH HP+VGD Sbjct: 201 PVDRKKYAVVSSDNGRYACTHWSLQERLGDYSLLRFKLDTGRTHQIRVHCAHRNHPVVGD 260 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 P Y + QALHA L L HPI+G M + AP+P+ + +L+ Sbjct: 261 PTY-----------SRCRKLPIELPGQALHAVQLGLDHPITGERMVFEAPLPEVLEKLLA 309 Query: 311 VMRAD 315 V+R Sbjct: 310 VLRKR 314 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 119/321 (37%), Positives = 179/321 (55%), Gaps = 17/321 (5%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 VS + RLDQ L PD SR+R++ I D+++LV+GK KP K+ G E + + Sbjct: 7 IQVSADDANIRLDQYLVSHLPDVSRARVQALIDDEKILVDGKS-SKPSYKLRGSEVIDVV 65 Query: 69 AE-IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPD-----GTVLNALLHY 122 E R P+DIPLD+VYED+D+ +INKP ++VH GAG + GT++NALL+ Sbjct: 66 GEYQPPPLRAIPEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGTLVNALLYR 125 Query: 123 YP---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + + R GIVHRLDK+T+GL+VVAK A +L E R + ++Y A+ G Sbjct: 126 FRALSEVGGDMRPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWP 185 Query: 180 TA-GGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEH----FRVHTRLRLRLETGRT 233 GT++ PI+R ++RT M G+ A++HY + E + + +++ETGRT Sbjct: 186 KKLKGTINLPIARDMSRRTRMTTRGSGGRDALSHYEVKEKIESPYGKFALVEVKIETGRT 245 Query: 234 HQIRVHMAHITHPLVGDPVYG-GRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 HQIRVHMA + HP+VGD +YG A + S + +R LHA + L P +G Sbjct: 246 HQIRVHMASLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAEIELQQPATG 305 Query: 293 IEMEWHAPIPQDMVELIEVMR 313 + + +P + + E +R Sbjct: 306 KALRFVTKVPAALEDFAETLR 326 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 174/321 (54%), Gaps = 9/321 (2%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + S G RLD +A + D SR I + +LV+G+ KP KV Sbjct: 1 MPPDRDVALVTSAGHDGLRLDTLVAGQW-DCSRHSAALLIKNGTILVDGRP-QKPSYKVG 58 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 + + ++ + P+ PL +++ED ++++NKP LVVHP G+ GT++N LL Sbjct: 59 VNQSITGRIPSQKPEKPGPEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLL 118 Query: 121 HYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 H++P I + R GIVHRLD++T+G +VVAKT A L + + R++ + Y A+ G Sbjct: 119 HHFPAIGTVGEPDRPGIVHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYG 178 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 M + G V PI RH +R M+V P +PA T +++ + F + L L + TGRTHQ Sbjct: 179 QMKSTGGVVTLPIGRHSLERKKMSVSSPQARPAETRWKVRKAFVDASLLELEIHTGRTHQ 238 Query: 236 IRVHMAHITHPLVGDPVYGGR--PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 IRVH + P+VGDP Y + + +S A L RQ LHA L HP++G Sbjct: 239 IRVHCTALQRPVVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGA 298 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 M + AP+ +D+ E++ ++RA Sbjct: 299 PMCFTAPLFEDIKEMLHLLRA 319 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 125/328 (38%), Positives = 169/328 (51%), Gaps = 30/328 (9%) Query: 7 LTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 L+ T+ E +RLD+ALA P+ SRSR+ + I + V + G PK +VL G+ Sbjct: 11 LSITIGE-DPPERLDKALAREAPEEAALSRSRLMKLIAEGAVRLKGVPVTDPKARVLEGQ 69 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 I E P+ IPL +V+ED D+I+I+KP +VVHP G GT++NALLH+ Sbjct: 70 VYEIVTGAAAEVEALPEAIPLSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHHC 129 Query: 124 PP----IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 I R GIVHR+DKDT+GL+VVAKT A L + + R Y A+ G Sbjct: 130 GASLSGIGGEKRPGIVHRIDKDTSGLLVVAKTDRAHQGLAAQFEAHTVERRYLALVHGVP 189 Query: 180 TAGG-----------------TVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFR-- 219 + I+RH T R AV G+ AVT R++E F Sbjct: 190 EPSDPRLRGIRGVSFEPGGVLRIATGIARHRTDRQRQAVTFEGGRHAVTRARLLERFGTP 249 Query: 220 -VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQ 277 + RLETGRTHQIRVHM+H+ H L+GD YGGR + K F RQ Sbjct: 250 PAAALVECRLETGRTHQIRVHMSHVGHGLIGDQTYGGRRKLSAKAVGAEAAQAAEAFPRQ 309 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDM 305 ALHA L HP++G ++ + +P+P DM Sbjct: 310 ALHAATLGFCHPVTGEDLSFESPLPADM 337 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 132/322 (40%), Positives = 172/322 (53%), Gaps = 16/322 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L V+ ++ RLD+ LA P SRSR+K ILD RV + G P GE + Sbjct: 101 LEVVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAASGETIT 160 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP- 125 I+ + I L+IV+ED+DII+I+KPR LVVHP AG+ GT++NAL+ + Sbjct: 161 IDVPPPVAPEPAGEAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALIAHCGES 220 Query: 126 ---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR----EITREYEAVAIGH 178 I V R GIVHRLDKDTTGLMV AK A L E+ R Y A G Sbjct: 221 LSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYYAFVWGA 280 Query: 179 MTA-GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV------HTRLRLRLETG 231 GT+D PI RHP R MAV G+ A+TH+ ++E F + + +LETG Sbjct: 281 PNRIRGTIDAPIDRHPHAREKMAVRDGGREAITHWEVLETFTGRSGGEIVSLIACQLETG 340 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGA-SEAFISTLRKFDRQALHATMLRLYHPI 290 RTHQIRVH+AHI HPL+GD VYG + + L RQALHA +L L HP Sbjct: 341 RTHQIRVHLAHIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAYLLVLEHPS 400 Query: 291 SGIEMEWHAPIPQDMVELIEVM 312 +G + W + +P D+ L + Sbjct: 401 TGEVVAWESGLPADLKRLKAAL 422 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 117/321 (36%), Positives = 181/321 (56%), Gaps = 11/321 (3%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 + V E++ RLD + + SR+RIK IL +++ +N ++ + P +KVL G+ Sbjct: 2 EKNINLIVGEDENNLRLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVLSGD 61 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY- 122 ++ + +EA +P + L IVYED+D++IINKP +++HPGAGN D T++NAL+HY Sbjct: 62 EINLQIPEPKEASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYN 121 Query: 123 ---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 I D R GIVHR+DKDT+GL+V+AK L ITR Y+ + G + Sbjct: 122 KDSLSTIGDELRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKL 181 Query: 180 -TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRV-----HTRLRLRLETGR 232 + G +D I+R R M V GK A+T+Y+ +E F + + RLETGR Sbjct: 182 RPSSGKIDTFITRSSKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLETGR 241 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIRVHM H+ + ++GD Y + + K + + K DRQ LHA L HP + Sbjct: 242 THQIRVHMTHMGNSIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRTN 301 Query: 293 IEMEWHAPIPQDMVELIEVMR 313 EM + + +PQ++ ++ ++R Sbjct: 302 EEMVFTSILPQELENILVLLR 322 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 162/311 (52%), Gaps = 17/311 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 ++ TV E GQ + + L + + SR + + NG + EK+ G+++A Sbjct: 6 ISFTVDEADAGQTVREVLQKRY-GVSRRLLIRAKFKGSITRNGVLVF-VNEKLQAGDKIA 63 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E E E P+D+PL I YEDED+++I KP LVVHP +P GT+ N ++ Y+ Sbjct: 64 VMVEEEAEETVAPEDMPLSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIAYWKKR 123 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTV 185 + + V+RLDKDT+GLM+VAK A + Q R + R Y A+ G + GT+ Sbjct: 124 GENRKFRAVNRLDKDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVESDDGTI 183 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 + PI V P G+ AVTHYR++ + + ++LETGRTHQIRVHM+ H Sbjct: 184 NTPIGLAENSFITRQVRPDGQTAVTHYRVLARGEGMSFVEVKLETGRTHQIRVHMSSEGH 243 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL GD +YGG RQALHA L HP SG+ M W P+P DM Sbjct: 244 PLAGDDLYGGEREH--------------IGRQALHAWGLSFVHPRSGLAMSWEEPLPNDM 289 Query: 306 VELIEVMRADF 316 +L + D+ Sbjct: 290 EQLAQQFFPDY 300 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 111/321 (34%), Positives = 180/321 (56%), Gaps = 9/321 (2%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A ++T + +R+D+ ++ FPD SR+ I++ + + ++VNG V K + Sbjct: 10 AHVKEVTLEIKRVGESKRIDRFISSRFPDLSRTYIQKLVKEGAIVVNGNVV-KSSYFIKK 68 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ ++ + EE + P+DIPL+I+YED+ +++INKP D+VVHP G+P GT++NA+ Sbjct: 69 GDVISATVPVPEETKITPEDIPLNIIYEDDYLMLINKPYDMVVHPAGGHPSGTLVNAVTF 128 Query: 122 YYP---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 Y I +AGIVHRLD+DT+G+M+V K+ + + ++R + +EY AV G Sbjct: 129 YCQNLSQINGPLKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGE 188 Query: 179 MT-AGGTVDEPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + ++ PI RH R MAV GK A + Y ++E FR +T +++ +TGRTHQI Sbjct: 189 VAFDSNEINMPIGRHRVDRQKMAVRRDTGKNATSVYEVIERFRGYTLVKIMPKTGRTHQI 248 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKG---ASEAFISTLRKFDRQALHATMLRLYHPISGI 293 RVHM I HP+V D +Y + E +RQALHA + +HPI Sbjct: 249 RVHMQAIGHPVVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNK 308 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 +M + + +D+ L+ +R Sbjct: 309 QMAFQVDMAEDISFLVSALRE 329 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 160/338 (47%), Gaps = 37/338 (10%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 G R+D+ L +P+ SR++I+ I + VNG K V G+++ + Sbjct: 5 ETGGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKK-SYGVEPGDEIVFRLIRKP 63 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----------- 122 + EP+ IPLD+V+E +D++++NKP +VVHP G+ GT+++ALLH+ Sbjct: 64 PMQAEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVDGGEVAADDE 123 Query: 123 ----------------YPPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQR 164 P D P R GIVHRLDK T+GL+VVAK A L E + Sbjct: 124 RDEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAHQPLAEQFKA 183 Query: 165 REITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRVH 221 + R Y A+ G + GT++ I R P R MAV P GK A THY +E Sbjct: 184 HTVDRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHYETVETHAHT 243 Query: 222 TRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRP----RPPKGASEAFISTLRKFDRQ 277 + + LETGRTHQIRVH HPL+GDP YGG+ + Sbjct: 244 SVVEFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYDQLFETLPHP 303 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 ALHA L HP + + + A P ++ +R + Sbjct: 304 ALHAYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQE 341 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 365 bits (937), Expect = 1e-99, Method: Composition-based stats. Identities = 124/314 (39%), Positives = 166/314 (52%), Gaps = 15/314 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +LTA + EN GQRLD+ LA +FPD SR+R++ I + R+ +G+ K G Sbjct: 26 RLTADLPENLAGQRLDKVLAPLFPDLSRARLQALIAEGRLTFDGETVADASRKARAG-VY 84 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ A EP+ +PL I+YED +I+++K + VHP G +GT++NALLH+ Sbjct: 85 SLVVPPPAPADPEPEALPLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHCGA 144 Query: 126 I----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 V R GIVHRLDKDT+G+MV AK+ A L +I R Y A+ G Sbjct: 145 SLSGVGGVARPGIVHRLDKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAPNP 204 Query: 181 AGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRV-----HTRLRLRLETGRTH 234 GT+ I R P R MAV G+ A+THYR+ F R+ RLETGRTH Sbjct: 205 PTGTIQTQIGRSPGDRKKMAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETGRTH 264 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHMA P +GDPVYG + RQALHA +L HPI+G Sbjct: 265 QIRVHMASKGSPCLGDPVYGAAQPAAAVRERIEAA---GLRRQALHAAVLGFVHPITGET 321 Query: 295 MEWHAPIPQDMVEL 308 + + P+P DM L Sbjct: 322 LRFETPLPADMDAL 335 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 168/309 (54%), Gaps = 21/309 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV--- 65 +S +G+RLD LA SRS+++ I +LVN KP K+ G+++ Sbjct: 14 LIISPEDVGERLDTLLAHKLESVSRSQVQRAIEQGTILVNDHP-SKPSYKLREGDRILIL 72 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 I + E P + L +VYED+ II+I+KP +VVHP G+ D T++NAL+ YP Sbjct: 73 TIPRVPQGEVALIPSYVDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIARYPD 132 Query: 126 IADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 + P R GIVHRLDKDT+GL++VA+ + L ++ R+I +EY + G + Sbjct: 133 LLKQPTDRPGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGALDPPE 192 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G ++ PI R RT M+V GK AVT Y ++ +T R TGRTHQIRVH A Sbjct: 193 GRIEAPIGRDLRDRTKMSVIAGGKEAVTEYSTIQSLGKYTLAIARPITGRTHQIRVHFAA 252 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HP+ GDP+YG L +RQ LHA+ L + P +G EWH+P+P Sbjct: 253 IGHPIAGDPIYGN-------------CRLEGLNRQFLHASRLGVVMP-NGEYKEWHSPLP 298 Query: 303 QDMVELIEV 311 +D+ + +E Sbjct: 299 EDLRQSLEK 307 >UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Tax=Magnoliophyta RepID=PUS2_ARATH Length = 430 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 118/360 (32%), Positives = 174/360 (48%), Gaps = 49/360 (13%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +++ V + RLD ++ SR+R++ I V VNG+V DK V G++ Sbjct: 69 LRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDE 128 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V + + E +DIPLDIVYED+ ++++NKP +VVHP GNP GT++N +LH+ Sbjct: 129 VNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHCS 188 Query: 125 -------------------------------PIADVPRAGIVHRLDKDTTGLMVVAKTVP 153 A R GIVHRLDK TTGL+VVAK Sbjct: 189 LPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEH 248 Query: 154 AQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMG------K 206 + L E + I R Y ++ G G ++ PI R + R MA P G + Sbjct: 249 SHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRAR 308 Query: 207 PAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG--------- 255 A + Y+++E F + RLETGRTHQIR H ++ PL+GD VYGG Sbjct: 309 HAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLL 368 Query: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 + R + E I + + DR LHA +L HP +G +++ P P D+ E++ ++R Sbjct: 369 QKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLRRS 428 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 109/325 (33%), Positives = 162/325 (49%), Gaps = 22/325 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + V E+ G R+D L + YSRS+I++ + + V+G++ +P KV G++ Sbjct: 1 MMREFVVPESANGFRIDLFLTQSCDGYSRSQIRDAVQNDGAEVDGRII-RPSYKVKAGQK 59 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V P++IPLDI+YED+ +++INKP +VVHP GN GT+ +AL + Sbjct: 60 VRFRVPPPASDDTVPENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQ 119 Query: 125 ---PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + R GIVHRLD+DT+G++VVAK L R + +EY A+ G + Sbjct: 120 SLSDVGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDR 179 Query: 182 GGT-VDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + I RHP +R A+ K A T Y ++E TR+ +R +TGRTHQIR Sbjct: 180 DRDWIHASIGRHPYQRDKQAIREGHATSKTASTFYEVVERHGRVTRVDVRPKTGRTHQIR 239 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGA--------------SEAFISTLRKFDRQALHATM 283 VH+AHI P++ D +YGG + RQALHA Sbjct: 240 VHLAHIGCPILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKA 299 Query: 284 LRLYHPISGIEMEWHAPIPQDMVEL 308 L +P +G EM AP+P D+ + Sbjct: 300 LTFTNPQTGKEMTLTAPLPPDLQAV 324 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 128/337 (37%), Positives = 175/337 (51%), Gaps = 30/337 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 L + E RLD+ALA P+ SRSR+ + I D V + G PK +V G+ Sbjct: 20 LRVVIGE-DPPDRLDKALARQVPEDAALSRSRLMKMIADGDVTLEGVAVTNPKARVAEGQ 78 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + + +P+DIPL +V+ED D+I+++KP +VVHP G+ GT++NALLH+ Sbjct: 79 EYLLRLAPAVDIDAQPEDIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNALLHHC 138 Query: 124 PPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 R GIVHR+DKDT+GL+VVAKT A L + +TR Y A+ G Sbjct: 139 GDTLSGVGGAKRPGIVHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIALVHGAP 198 Query: 180 ---------------TAGGT--VDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRV- 220 GG + ++RH T R AV G+ AVT R++E + Sbjct: 199 NAADPRLRGIRGVSFEPGGIVCIATNLARHKTDRQRQAVLFDSGRHAVTRVRVLESYGTP 258 Query: 221 --HTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQ 277 + LETGRTHQIRVHM+H H L+GD YGGR + PK EA F RQ Sbjct: 259 PVAALVECWLETGRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAANDFPRQ 318 Query: 278 ALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 ALHA L HP+SG E+ + +P+P DM L +R Sbjct: 319 ALHAASLGFVHPVSGEELLFTSPLPADMAALTAALRG 355 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 124/313 (39%), Positives = 176/313 (56%), Gaps = 6/313 (1%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLV-NGKVCDKPKEKVLGGEQVAI 67 TVS G+RLD LA + SRSRI+ + + V G V + +V GE+ + Sbjct: 13 ITVSTEASGKRLDAVLAAAC-ELSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLL 71 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YP 124 + EP+D+PLDI++EDE +I++NKP +VVHP G+ GT+++ALLH+ P Sbjct: 72 TLPPVKPLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHALLHHCKTLP 131 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 I V R GIVHRLDKDT+G +V+AK+ RL E + R+Y A G + Sbjct: 132 GINGVERPGIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCRGVPSWRVK 191 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ PI RHP +R MAV G+ ++T + F +++RL L TGRTHQIRVHMAH Sbjct: 192 CIELPIGRHPHQRQKMAVTDSGRESITDAAVEHIFGPFSQMRLTLHTGRTHQIRVHMAHE 251 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GDPVY P + E + RQALHA +L HPISG M + AP+P+ Sbjct: 252 NLPVLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGEPMSFRAPLPE 311 Query: 304 DMVELIEVMRADF 316 D+ L + + + Sbjct: 312 DLTILHDALTKSY 324 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 174/309 (56%), Gaps = 21/309 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V + GQRLD LA+ D SRS+IK I +++VLVN K K K+ + +++ Sbjct: 4 FKVDKENFGQRLDVYLAK-LVDLSRSQIKNLIDNEKVLVNKKNV-KAGYKLSEDDVISLE 61 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA- 127 ++ + + I +++YEDE I +I+KP+DLVVH GAGN GT++N LL+ + Sbjct: 62 YP--KDNKPFAEKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKFKNQLS 119 Query: 128 --DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 D R GIVHRLDK+T+GLM++AK A LV+ + +I + Y A+ G G + Sbjct: 120 DLDPLRPGIVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGKTPESGII 179 Query: 186 DEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 EPI R+P R MAV K A+T Y+ ++ F+ ++ L + L TGRTHQIRVHMA+I Sbjct: 180 AEPIGRNPNDRKKMAVVYKNSKQAITKYKKLKEFQEYSLLNINLLTGRTHQIRVHMAYIG 239 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 +P++GD +YG + D+Q LH+ L HPI+ +ME+ P Sbjct: 240 YPVLGDIIYGRKNSLK-------------IDKQMLHSYKLIFNHPITNQKMEFTDEFPIR 286 Query: 305 MVELIEVMR 313 + I+ ++ Sbjct: 287 FKKFIDKIK 295 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 181/323 (56%), Gaps = 16/323 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + + + G+RLD +++ + SR++ +E I + V VN K+ + Sbjct: 1 MSILLQTEKADEGKRLDIFISDKL-NISRAKAQEAIEKKFVKVNN-YVKTKSYKIKFNDL 58 Query: 65 VAIN----AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 + ++ ++E + PQ+IP+ ++Y+D+ +I+++KP +VV+P AG+PDGT++NAL Sbjct: 59 IEVSDEFSLKLENSEKLIPQNIPIQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALA 118 Query: 121 HY---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 ++ + R GIVHRLDKDT+G+MVVA +LVE+ ++REI +EY A+ G Sbjct: 119 YHVKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYG 178 Query: 178 HMTAGGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + G + P+ R R M++ K A+T + ++++F+ +T L++++ TGRTHQI Sbjct: 179 QLRGSGKITTPVGRAIYDRKKMSIKSKKAKEAITEWEVIKNFKNYTFLKVKILTGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH + I HP++GD YG + + RQ LHA + L HPI+ ++ Sbjct: 239 RVHFSSIGHPVIGDKTYGRKTYI------EIGNKKIPVSRQMLHAHKIELIHPITEKLLQ 292 Query: 297 WHAPIPQDMVELIEVMRADFEEH 319 + A +P D+ ++ ++ +E Sbjct: 293 FEASLPDDIQYILNILEDRYESE 315 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 117/328 (35%), Positives = 169/328 (51%), Gaps = 23/328 (7%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV GQRLD L PD SRSR+K + D +V V+ + ++ K+ GGE V + Sbjct: 29 FTVPAEAAGQRLDAWLTTQLPDVSRSRVKLLLDDGQVTVD-SLKERASLKLRGGESVEVR 87 Query: 69 -AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPD-----GTVLNALLHY 122 R +DIPLDI+YED+D+I++NKP ++VH G+G D GT++NALL Sbjct: 88 GEPAPPPLRAMAEDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATDSARNRGTLVNALLGR 147 Query: 123 ---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 R GIVHRLDK+T+GL++VA+ A RL E +REI + Y A+ GH+ Sbjct: 148 QEKLSKTGGDLRPGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQREIHKTYLALVHGHI 207 Query: 180 TAG-GTVDEPISRH--PTKRTHMAVHPMGKPAVTHYRIME----HFRVHTRLRLRLETGR 232 GT++ I+R R + A++HYR+ + T + +R+ETGR Sbjct: 208 AEDRGTINAAIARDVIRRTRMTTRRTEGARTAISHYRVQRRIETRWGKFTLVSVRIETGR 267 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPR------PPKGASEAFISTLRKFDRQALHATMLRL 286 THQIRVH++ I HP+VGD YG + R LHA L+ Sbjct: 268 THQIRVHLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEGLSLPRNFLHAAELKF 327 Query: 287 YHPISGIEMEWHAPIPQDMVELIEVMRA 314 HP S + AP+P ++V +E + + Sbjct: 328 PHPRSEKPLHLEAPLPAELVAFLEQLES 355 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 167/325 (51%), Gaps = 17/325 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 TV G RLD +A+ SR++ I + VLVNG +K K G+ V + Sbjct: 10 EFTVG-YTAGGRLDLLVADHAS-VSRTQAATLIANGNVLVNGAR-EKASYKGETGDVVRV 66 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YP 124 + IPLD+VYEDE +++++K +VVHP GN GT++NALL Sbjct: 67 TIPPPPGRDIVAEQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNWTGTLVNALLGRGEPLA 126 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG- 183 RAG+VHRLDKDT+GL+VVAK+ A L +L R++TR Y AV GH+ Sbjct: 127 EGGGEDRAGLVHRLDKDTSGLLVVAKSDAAHRTLSSALAARQVTRRYAAVCWGHLAEERI 186 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 TV++PI+R P RT MA+ GK + T + + F LR L TGRTHQIRVH+A Sbjct: 187 TVEKPIARDPRDRTRMAIVQSGKASRTDFTRLARFDSVDLLRAHLHTGRTHQIRVHLAST 246 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP+VGD Y G L R LHA LR HPISG ++ +P+P Sbjct: 247 GHPVVGDDTY--------GGGGGRRLALLPPRRHFLHAAWLRFRHPISGDLIDLRSPLPA 298 Query: 304 DMVELIEVMRA--DFEEHKDEVDWL 326 D+ + + + + +D ++ Sbjct: 299 DLRTSLAALGSMPELATQQDPLETF 323 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 163/311 (52%), Gaps = 9/311 (2%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 ++ + G+R+D ++ ++ D SR IK I + VL+NG+ K +KV + + Sbjct: 3 QIKITPDIAGERIDVLISNIYKDISREYIKRIIKENGVLINGEKVFKSSKKVFENDVLEF 62 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP-- 125 ++ + QDI +DI+YED D+ ++ KP + H G G+ + T++NALL + Sbjct: 63 EIPPPKKLDVKAQDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALLAKFGDLS 122 Query: 126 -IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGG 183 I V R GIVHRLD+ T GLMV+AK + +L + +E+ + Y+A+ G Sbjct: 123 VIGGVERPGIVHRLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYGISRFKEQ 182 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 T++ I RHPT R V GK A+T Y + + + + L +++ TGRTHQIRVHM++I Sbjct: 183 TIETFIRRHPTNRLKFEVANEGKLAITKYSLEKPLKNASLLDIKIYTGRTHQIRVHMSYI 242 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HP+VGD +YG + E I R L A L HP S ME+ +P Sbjct: 243 GHPIVGDTLYGYKHSYFDKTLEHMIG-----KRFLLVAYKLSFLHPKSQKPMEFEIDMPD 297 Query: 304 DMVELIEVMRA 314 +++ + + Sbjct: 298 YFKNVLKYLES 308 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 361 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 162/317 (51%), Gaps = 17/317 (5%) Query: 1 MAQRV-QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M + + V RL+ L E S I++ + R+ VNG + Sbjct: 1 MESKDNIIKLKVEIETEEIRLNHYLKE-VAQCSSRFIRKAAREGRIKVNGNNARL-SYML 58 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 + V + +EE P+ + LDI+YED DII++NKP+ +VVHP + +GT+ N + Sbjct: 59 TNNDIVELQINRKEEQDIIPEKMDLDIIYEDNDIIVVNKPKGIVVHPTKRHLNGTLSNGV 118 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 L+Y+ + +V+RLD DT+GL+++AK + L +Q+ + ++Y A+ G+ Sbjct: 119 LYYFNDKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNF 178 Query: 180 TAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 G +D+PI R + G+ ++T ++++E ++ + + L LETGRTHQIRV Sbjct: 179 NEDSGVIDKPIYRVGEGTLKRIIDERGQRSITLFKVIEQYKNASLVELTLETGRTHQIRV 238 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H++ I HP+ GD +YG DRQALHA L++ HP G ++ Sbjct: 239 HLSSIGHPIYGDSLYGEEEPQY-------------IDRQALHAYKLQIPHPKDGKILKLE 285 Query: 299 APIPQDMVELIEVMRAD 315 + +P+DM LI + + Sbjct: 286 SSLPEDMKNLIRKLSEE 302 >UniRef50_Q5Z8P2 RNA pseudourine synthase 2, chloroplastic n=6 Tax=Magnoliophyta RepID=PUS2_ORYSJ Length = 445 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 170/367 (46%), Gaps = 59/367 (16%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD--YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 +L V + R+D ++ SR+RI+ I V+VNG+ K V GG Sbjct: 59 TRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKVSHMVKGG 118 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 + V+ + R EP+DIPLDIVYED+ ++++NKP +VVHP GN +GT++NA+LH+ Sbjct: 119 DIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNAILHH 178 Query: 123 YPP----------------------------------------IADVPRAGIVHRLDKDT 142 + R GIVHRLDK T Sbjct: 179 CKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIVHRLDKGT 238 Query: 143 TGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAV 201 +GL+VVAK + +L E + I R Y ++ G G ++ PI+R P R M Sbjct: 239 SGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIA 298 Query: 202 HPM-----GKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYG 254 P + A + Y++ E F + RLETGRTHQIR H ++ PL+GD YG Sbjct: 299 TPGSGHRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDETYG 358 Query: 255 G---------RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 G RPR P + + K DR LHA +L HP SG +E+ P P D Sbjct: 359 GTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDF 418 Query: 306 VELIEVM 312 E++ + Sbjct: 419 TEVLNEL 425 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 187/315 (59%), Gaps = 18/315 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MA ++ + T +Q G R+D L++ YSR+ + W++D +LVN + KV+ Sbjct: 1 MANKILIHIT---DQAG-RVDAVLSKENLSYSRTTLSNWLVDGTILVNNHKVKR-SYKVV 55 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ ++I +E + E ++IPLDI+YED+DII++NKP+ +VVHP AG+ GT++NALL Sbjct: 56 SGDTISITPPETQETKIEAENIPLDIIYEDDDIIVVNKPQGMVVHPAAGHSSGTLVNALL 115 Query: 121 HY--YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 H+ I R GIVHR+D+DT+GL++VAK A L E L+ + R Y A+ G Sbjct: 116 HHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVRGE 175 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 T GT++ PI RH R AV G+ AVTH+R+++ + +T L++ LETGRTHQIR Sbjct: 176 FTEDSGTIEAPIGRHKIDRKKQAVIEGGREAVTHFRVLKRYVGYTLLKVSLETGRTHQIR 235 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM++I HP+VGDPVYG A + + Q LHA L L P +G E+ + Sbjct: 236 VHMSYIGHPVVGDPVYG----------TAQKLDGTQLNGQLLHAKTLTLEQPTTGDELSF 285 Query: 298 HAPIPQDMVELIEVM 312 +P+P + + Sbjct: 286 DSPLPDYFQFALSTL 300 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 110/327 (33%), Positives = 172/327 (52%), Gaps = 13/327 (3%) Query: 2 AQRVQLTATVSEN--QLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKE 57 +L T + RLD+ SR ++K+WI +NGK+C KP + Sbjct: 9 ENETELLWTKTAEFSDRNTRLDKFWGTALEEEGISRGKVKDWIKAGFAEINGKICKKPNQ 68 Query: 58 KVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 K++G E++ + E E P+++PL+I+Y D I +INKP L HP P GT+++ Sbjct: 69 KLMGNEELTLKGEA-ELTSLVPEELPLEIIYNDGKIAVINKPAGLTTHPAPSCPTGTLVH 127 Query: 118 ALLHYYPPIADVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 ++H++P I D+ R GIVHRLDK T+GL+ VA + + + RE+ + Y A+ Sbjct: 128 RMIHHFPEIRDMDEWRPGIVHRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIV 187 Query: 176 IGHMTAG-GTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEH--FRVHTRLRLRLETG 231 G G +D+P+ RHP +T MAV G+ A + Y ++ + +++++ TG Sbjct: 188 HGVPKREFGEIDQPMGRHPVHKTKMAVVLKGGRDARSEYEVLWSDPAGRASLVKVKIYTG 247 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVHMAHI HPLVGD VYG P + + +RQ LHA L HP S Sbjct: 248 RTHQIRVHMAHIGHPLVGDQVYGSMPH--AIWEQDQPQLAKLAERQMLHAYSLSFTHPDS 305 Query: 292 GIEMEWHAPIPQDMVELIEVMRADFEE 318 E+ + P+D + +++ + + Sbjct: 306 EEELSFTQAPPEDFINMLKALDKSVQR 332 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 162/322 (50%), Gaps = 16/322 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L TV + G+ + L + S IK+ ++L N + V + Sbjct: 1 MNLKYTVDKETSGKTVKHILKKQLK-LSERLIKKLKRQGKILCNNRPVY-VNAVVCENDI 58 Query: 65 VAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + ++ + ++ +P+DIP+DI+YEDE +I +NK +VVHP +P GT+ NA+ + Sbjct: 59 IEVDLDFDDSGIFIQPEDIPIDIIYEDEFLIALNKQPGIVVHPTCSHPGGTLANAVAFHL 118 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 V + V RLD+DT+G+++ AK Q L+ + + +EY + + Sbjct: 119 QKKGIVKKIRPVIRLDRDTSGIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLENDN 178 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 GT+D PI+R P + P G PAVTHY ++E T ++ RLETGRTHQIRVH Sbjct: 179 GTIDLPIARKPGSIMLRHISPDGDPAVTHYTVLERLNGATLVKFRLETGRTHQIRVHCQA 238 Query: 243 ITHPLVGDPVY----------GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 I HPL+GD +Y G P + + + S + RQALH+ HP + Sbjct: 239 IGHPLLGDTLYPFEDTPYSLSGNNPHITQANTPSITSGI--ITRQALHSQRAVFLHPFTK 296 Query: 293 IEMEWHAPIPQDMVELIEVMRA 314 +E APIP+DM +E++R Sbjct: 297 KILEITAPIPEDMKSALEILRK 318 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 111/315 (35%), Positives = 169/315 (53%), Gaps = 18/315 (5%) Query: 7 LTATVSENQLGQRLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 VSE L RLDQ L SR R+K+ I+ ++ KVC P ++ G Sbjct: 6 FFFIVSEVTL-VRLDQFLYNNLCTHGVSRERLKKVIVSGGCKIDDKVCFSPSTRLKVGMH 64 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + I E + P++ L+I++ DE + IINKP L VHP + T+++ LL Y+P Sbjct: 65 IFIQLP-EVVSALLPEEGFLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFP 123 Query: 125 PI--ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 + R GIVHR+DKDT+GL+ +A T + +L + R+I +EY A+ G + Sbjct: 124 KLIEQGGLRPGIVHRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPSME 183 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHM 240 G + P+ R P + +AV+P GKPA T +R++ + ++ L L ++TGRTHQIRVHM Sbjct: 184 GYIAVPLGRDPKTKVKVAVNPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHM 243 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 HI HPLVGD +Y G + +RQ LHA L HPI+G +M + P Sbjct: 244 KHIGHPLVGDKLYAGGHVNKT----------FQCNRQMLHAWKLSFEHPITGKKMNFLCP 293 Query: 301 IPQDMVELIEVMRAD 315 P+D ++ + ++ + Sbjct: 294 PPKDFLDTVSLLEQE 308 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 359 bits (923), Expect = 7e-98, Method: Composition-based stats. Identities = 127/320 (39%), Positives = 172/320 (53%), Gaps = 22/320 (6%) Query: 1 MAQRVQL-TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M + + V E G R+DQ +A DYSRS ++ WI + + VNG V KP ++ Sbjct: 1 MKEVKNMNKLIVEEMFDGMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVV-KPNLRL 59 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGN-PDGTVLNA 118 + V EE+ P + LDIVYED+ I+++NKP+ L+VHP T+++ Sbjct: 60 KEDDVVEYEI-TEEQISIVPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHG 118 Query: 119 LLHY---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 LL + + R GIVHR+DKDTTGL+VVAKT A LVE L++R I+REY A+ Sbjct: 119 LLAHTTQLSDLNGELRPGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIV 178 Query: 176 IGHMT-AGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 TVD PI R P R MAV K AVTH+ + E F + LR +L+TGRT Sbjct: 179 HHQFKHQSATVDAPIGRDPKNRQRMAVTDQNSKQAVTHFYLAERFNDFSVLRCKLDTGRT 238 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH +I HP+VGD Y + + Q LHA L L HP+S Sbjct: 239 HQIRVHAQYIKHPIVGDQTYSYKNTWET-------------NGQCLHAQKLTLTHPVSKE 285 Query: 294 EMEWHAPIPQDMVELIEVMR 313 M + A +PQ M ++IE +R Sbjct: 286 VMTFEAELPQTMKDVIEEIR 305 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 124/325 (38%), Positives = 167/325 (51%), Gaps = 19/325 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + V E G RLD LA SRSR + I V +P K+ Sbjct: 35 MNGEIY-ELAVPEEDSGARLDLFLAGELS-LSRSRARSLIDGGAVSSGQVKKIRPAFKIQ 92 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ + A QD+P D+VYED+D+I++NKP +VVHPGAG PDGT++N L+ Sbjct: 93 PGQIYRVEIPEAAPAEIAAQDMPFDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLM 152 Query: 121 HYYPPIA---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 YP I D R GIVHRLD T+GLMVVA++ A L E+ Q E+ +EY + +G Sbjct: 153 FRYPEIGRIGDSVRPGIVHRLDVGTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVG 212 Query: 178 HMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + GTVD PI R P R M V G+ AVT Y+++ +R+RL TGRTHQI Sbjct: 213 ALKAPEGTVDAPIGRDPRNRLKMCVSWDGRDAVTDYKVLWTRARCNLIRVRLHTGRTHQI 272 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM + L GD +YG + DR LH+ L HP+SG +E Sbjct: 273 RVHMRALGCSLDGDTLYGPKDPAQHILK----------DRVFLHSWRLGFRHPVSGERLE 322 Query: 297 WHAPIPQDMVELIEVMRADFEEHKD 321 + AP+P + LI +R + +D Sbjct: 323 FRAPLPPE---LIAALRVPLSQPED 344 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 114/323 (35%), Positives = 176/323 (54%), Gaps = 23/323 (7%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ---RVLVNGKVCDKPKEKVLGGEQ 64 + V E QRLD+ +++ P+YSR+ +++ + D V K+ + E V+ G+ Sbjct: 10 SWVVDEFNECQRLDRYISQQLPEYSRTFLQKSLKDGAFELVRSGAKINARMSENVIEGDF 69 Query: 65 VAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V E +E+ P+DI LDI+YED+DI+++NKP +VVHPGAGN GT++NALL Sbjct: 70 VHYKMPEEADESTLLPEDIELDIIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRD 129 Query: 124 PPI-----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 R GIVHRLDK+T+G+++VAK+ +L S RR++ + Y A+ G Sbjct: 130 LDTFSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGT 189 Query: 179 MT-AGGTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 + T+ I R + R M GK A++HY+++ T ++L+++TGRTH Sbjct: 190 IRVGRDTITSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLADNNGATLVKLKIDTGRTH 249 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM+ I HP+VGD +YG R K + DR LHA R+ HP + Sbjct: 250 QIRVHMSGINHPVVGDKLYGVRRLDEKESP----------DRHILHAWRTRIIHPGTQEI 299 Query: 295 MEWHAPIPQDMVELIEVMRADFE 317 M + AP+ D + + +F+ Sbjct: 300 MTFTAPLHDDFKSVCDKFGIEFD 322 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 111/312 (35%), Positives = 165/312 (52%), Gaps = 17/312 (5%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPK-EKVLGGE 63 ++ T ++ RLD +A+ D SRS + + D+ V VNG KPK KV G+ Sbjct: 4 IEKTIKLNVETGNMRLDAYIADN-TDISRSFAERLVTDEFVKVNG--VSKPKKYKVKSGD 60 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + I+ EE P + ++I+Y+ ++ +INKP + VHP G+ D T++NA+L + Sbjct: 61 SIVIDVPREEVPELTPVKMDIEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAMLAEF 120 Query: 124 P-PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA- 181 + R GIVHRLDKDT+GLM+VAK ++ L + R+I + Y AV G Sbjct: 121 DITDDNDLRPGIVHRLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGKPKEL 180 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 T+++PI RH R M V G+ + + R+++ +R+ TGRTHQIRVHM+ Sbjct: 181 EFTIEQPIGRHYKDRKRMCVREDGRYSKSGVRVLKQNNNAFLAEIRIFTGRTHQIRVHMS 240 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H PL GD VYG R S RQALH+ L P +G +M + +P+ Sbjct: 241 HAGFPLAGDVVYGHR-----------QSLKLPIKRQALHSFRLAFVSPFTGEDMVFESPL 289 Query: 302 PQDMVELIEVMR 313 P DM ELI ++ Sbjct: 290 PLDMKELIIGLK 301 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 164/318 (51%), Gaps = 21/318 (6%) Query: 1 MAQR---VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKE 57 M ++ +++ + E + RL+ L SR I++ + R+ VN + Sbjct: 1 MEEKNNILKIKVQIDEEE--IRLNHYLKNHANCSSR-FIRKAAREGRIKVNNENVRL-SY 56 Query: 58 KVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 + + + + EE P+ + LD++YED+DI++INKP+ +VVHP + +GT+ N Sbjct: 57 MLKNDDVIELQINREENQDIVPEKMHLDVIYEDKDIVVINKPKGIVVHPTKRHQNGTLSN 116 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +L+Y+ + +V+RLD DT+GL+++AK + L +Q+ + + Y A+ G Sbjct: 117 GVLYYFKEKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYLAIVHG 176 Query: 178 HMT-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 ++ G +++PI R + G+ +VT ++++E + + L LETGRTHQI Sbjct: 177 NLKEKSGVINKPIYRVGEGTLRRVIDERGQRSVTRFKVVESYEDADLVELTLETGRTHQI 236 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH++ I HP+ GD +YG DRQALHA L++ HP G ++ Sbjct: 237 RVHLSSIGHPIYGDSLYGKEEHEY-------------IDRQALHAYKLQIPHPKDGRILK 283 Query: 297 WHAPIPQDMVELIEVMRA 314 + +P DM LI ++ Sbjct: 284 LESDLPDDMKNLISKLKK 301 >UniRef50_Q89AD9 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUD_BUCBP Length = 317 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 146/317 (46%), Positives = 218/317 (68%), Gaps = 1/317 (0%) Query: 1 MAQRVQLTATVSE-NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M +++L A V + + L RLDQ LA +F +SR+ +K IL + V VNG++ D+P KV Sbjct: 1 MQNKLKLIAIVPKISLLKNRLDQVLASLFKKHSRTILKRHILSKDVCVNGRILDQPDAKV 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 L + ++IN + + + ++ ++I L+++YED+DI++INK + VVHPGAGN GT+LNAL Sbjct: 61 LYKDIISINLKFKAKNDYQAENIFLNVIYEDDDILVINKQDNFVVHPGAGNTSGTLLNAL 120 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 LH ++PRAGIVHRLDKDTTGLMV+AK + L++ ++ +++ REY+A+ G + Sbjct: 121 LHRDSTFFNIPRAGIVHRLDKDTTGLMVIAKNNLSYMALIDQIKCKKVIREYQAIVYGKV 180 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +GGT+ + I R+P KRT M V+ GK A+THYRI++ F HT L++ LETGRTHQIR H Sbjct: 181 ISGGTIVKSIIRNPIKRTTMIVNKCGKRAITHYRILKRFTHHTHLKIILETGRTHQIRTH 240 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M +I PLVGD YG + + K S + ++KF RQALHA+ L LYHP++ MEW++ Sbjct: 241 MLYINFPLVGDKTYGNKFKFYKNISLTLLEQVKKFPRQALHASRLCLYHPVTKHLMEWNS 300 Query: 300 PIPQDMVELIEVMRADF 316 +P+DM+ LI ++ + Sbjct: 301 TLPRDMLNLIALLNKNI 317 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 11/308 (3%) Query: 14 NQLGQRLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI 71 + G RLD + D SR++++ I LV+G++C KP K+ GGE + + Sbjct: 22 DAAGTRLDAFWSARLASEDISRAKVRAAIEAGLALVDGEICRKPGLKLRGGEALTLRLP- 80 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD--V 129 E + + +D L ++Y D D++++NKP L +HP + PDGT++N LLH++P + Sbjct: 81 ETPSEAKAEDGELKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHFPDMRAMAG 140 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEP 188 R GIVHRLDKDT+GL++VA+T A+ L R + + Y A+ G G ++ P Sbjct: 141 DRPGIVHRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPERSDGVIELP 200 Query: 189 ISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAHITH 245 + R P T MAV G+ A + +++ + L + + TGRTHQIRVHMA + H Sbjct: 201 VGRDPKHPTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQIRVHMAAMGH 260 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 P+VGD VYG R + + R RQ LHA L HP +G E+ + P P D Sbjct: 261 PIVGDAVYGARQH--SDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFCQPPPADF 318 Query: 306 VELIEVMR 313 L+ ++ Sbjct: 319 WRLLLMLG 326 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 157/312 (50%), Gaps = 15/312 (4%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 V + G RLD L+ + SRS + I V GKV K V+ G+ Sbjct: 3 SRRIVVEPSDAGNRLDLYLSGQL-ELSRSAVGRLISGGLVSGVGKV--KASRVVVSGDWF 59 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ E PQD+P VY D+ + ++ K + VHPGAG DGT++N L+ + P Sbjct: 60 DVSMPEPSEESVVPQDVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNGLVKTFGP 119 Query: 126 I-ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GG 183 + R GIVHRLD T+GLMVVA+T A L +R + + Y A+ G + A G Sbjct: 120 LPGAGLRPGIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHGWIPASQG 179 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 T+D PI R R MAV G+ AVT YR + + R+ETGRTHQIRVHMA I Sbjct: 180 TLDGPIGRSRYDRLKMAVRADGRRAVTRYRTLWTRGSLSLTACRIETGRTHQIRVHMASI 239 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 L GD +YG + +S R LHA L +HP G M + +P+P Sbjct: 240 GCYLDGDRLYGPKD----------VSRHFLEGRVFLHAWRLSFHHPSDGRTMNFRSPLPD 289 Query: 304 DMVELIEVMRAD 315 +++ +++ +R++ Sbjct: 290 ELIGVLKKIRSE 301 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 129/315 (40%), Positives = 182/315 (57%), Gaps = 24/315 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++ T Q RLD L + +RS+I I D V+VNG + K K+ ++ Sbjct: 1 MKFKIT---EQTDSRLDHFLVAS-TELNRSQITTLIKDGLVMVNG-LTTKAGYKLKNSDE 55 Query: 65 VAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY- 122 + +N E +EE +P++I L+IVYED+DI++INKP+ LVVHP + T+++ LLH+ Sbjct: 56 ITLNLEAKEETNPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHT 115 Query: 123 --YPPIADVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 D P R GI+HR+DKDT+GL++VAKT A L + L+ +I REY A+ G + Sbjct: 116 DTLSTHNDDPLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVL 175 Query: 180 T-AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 G +D PI+RHP RT MAV GKPA+TH+ +M FR HT L +LETGRTHQIRV Sbjct: 176 DHNKGVIDAPIARHPKIRTKMAVVATGKPAITHFEVMRTFRDHTLLHCKLETGRTHQIRV 235 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H+A+I HP+ GDP+YG + + K D Q LHA L HPI+ M Sbjct: 236 HLAYIKHPVTGDPLYGTKAKILK-------------DGQLLHAFRLEFVHPITKKVMMLE 282 Query: 299 APIPQDMVELIEVMR 313 AP+P + + + Sbjct: 283 APLPPEFESYLVTLG 297 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 153/313 (48%), Positives = 217/313 (69%), Gaps = 8/313 (2%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 V +Q G RLD L+++ P YSRS+IK WIL+++V+VN +V P++KV+ GE + I Sbjct: 8 IVQVHQSGYRLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELIEIKY 67 Query: 70 EIE----EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + PQ+IPL+I+YED DI++INK ++VVHPG G+ GTVLNALL+ YP Sbjct: 68 INNNDICKSEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLNALLYRYPS 127 Query: 126 I-ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-G 183 I +AGIV RLDKDTTGLM++AKTV A L+ S + R++ +EY+A+ G T+ G Sbjct: 128 ILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVYGKFTSNAG 187 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 V++P+ RH KRT M+VH GK AVT+Y ++E F+ H+R+R+ L+TGRTHQIRVHMA+I Sbjct: 188 VVNQPMRRHFAKRTFMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGRTHQIRVHMAYI 247 Query: 244 THPLVGDPVYGGRPR--PPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 HPLVGD Y G K S+ + L F+RQALHA L+L HPI+ ++M+W+AP+ Sbjct: 248 NHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPITQVQMKWNAPL 307 Query: 302 PQDMVELIEVMRA 314 PQD+++LI +++ Sbjct: 308 PQDILQLIAILKK 320 >UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6Q916_9GAMM Length = 311 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 118/316 (37%), Positives = 189/316 (59%), Gaps = 5/316 (1%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + TVS+ RLD+ +F D+SR++IK+WIL+ RV +N + P++ V Sbjct: 1 MENKK----TVSKEHSKMRLDKVSTIIFEDFSRTQIKKWILEGRVFLNDDIAS-PRDLVH 55 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ + I+ EE+ + P++I +D++YE++D +IINK +L++HPGAG GT+ NALL Sbjct: 56 EGDSIQIDPIAEEKISWVPEEIDIDVIYENDDYLIINKQPNLIMHPGAGCSSGTLANALL 115 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 H+YP + ++ RAGIVHRLDKDT+G+++VA+ + V+ LQ+RE+T+ Y A+ +G + Sbjct: 116 HHYPELKNIARAGIVHRLDKDTSGVILVARNDKFRNYFVDLLQKREVTKLYSAIVVGTII 175 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 V +PI R R M++ GK + T ++ E ++ L + + TGRTHQIRVH+ Sbjct: 176 GSFKVTDPIGRDKKNRVKMSIRSDGKESETFVKLKESLGNYSLLDISIMTGRTHQIRVHL 235 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + P++GD Y KG S I +++F RQALHA L + ++ Sbjct: 236 SSKKLPIIGDNTYNPAKNIAKGTSSKLIDIIKQFPRQALHAYQLSFKDMHTDEFKTFNCD 295 Query: 301 IPQDMVELIEVMRADF 316 IP DM LI++++ D Sbjct: 296 IPDDMKYLIDILKKDI 311 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 130/317 (41%), Positives = 183/317 (57%), Gaps = 21/317 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L +SE +G+RLD +A++ D +R + I +LV+G KP +V GE Sbjct: 1 MNLKIEISEALMGRRLDLVVADVVHDTTRGAVVRAIEKGLILVSGNR-KKPAYRVKPGEV 59 Query: 65 VAINA--EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V + E E E++ + I LD ++ED+ I+++NKP +VVHPGAGN GT+LNALLH+ Sbjct: 60 VCGSLGSESEIESKPRAESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALLHH 119 Query: 123 YPPIAD-----VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +P + D R GIVHRLDKDT+G +VVAK+ A L + + R + + Y A+A G Sbjct: 120 FPSLTDTHCDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALATG 179 Query: 178 HMTA-GGTVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 +T G + PI RHP R MAV +PA T +R++ HT L + L+TGRTHQ Sbjct: 180 IITETQGRITLPIGRHPIHRKRMAVNTERARPAETLWRVLGQMAGHTLLDVGLKTGRTHQ 239 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVH + HPL GD VYG R + + RQ LHA L HP SG + Sbjct: 240 IRVHFRALGHPLAGDRVYGFRGKQSA-----------RAPRQMLHAGTLGFRHPWSGKRV 288 Query: 296 EWHAPIPQDMVELIEVM 312 E+ AP+P+DMVE++E + Sbjct: 289 EFTAPLPEDMVEVLERL 305 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 124/334 (37%), Positives = 174/334 (52%), Gaps = 24/334 (7%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 R LT + G RLD+ L+ + P SRS ++ I D V +G + P+ V G Sbjct: 2 NRKTLTFQIEAGDAGTRLDRCLSRLIPGESRSFLQRLIRDGLVKADGVALEVPRYPVRAG 61 Query: 63 EQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 +A+ EE + I+YED+ +++I+KP +VVHP AGNP GTV+NALL Sbjct: 62 MSIAVELPEEESPEPAAEPFEFPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNALLGR 121 Query: 123 YPPIADV-----PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 YP +A+ R GIVHRLDKDT+G + VAKT AQ +L + RE + Y A+ G Sbjct: 122 YPQLAEQLACTTSRPGIVHRLDKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAITRG 181 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEH----FRVHTRLRLRLETG 231 G + I RHP R MAV GK A+T YR+ L +R+ TG Sbjct: 182 VPIRRSGELSTLIGRHPVSRQKMAVVERNGKLAITRYRVEYTGMLDGVEIGVLAVRILTG 241 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH+A + P++GD VYGG + +RQ LHA L + HP + Sbjct: 242 RTHQIRVHLASLGVPVLGDAVYGGART-----------AVAGVERQLLHAWKLCVPHPAT 290 Query: 292 GIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDW 325 G ME+ AP P+D+ ++E R + ++ D+ Sbjct: 291 GTPMEFTAPPPEDIRRILE--RIGVKTLREPADF 322 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 109/297 (36%), Positives = 154/297 (51%), Gaps = 11/297 (3%) Query: 17 GQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 G RLD + D SR+R++ I V+G C KP K+ GGE + +N Sbjct: 23 GTRLDVFWSARLADLEVSRARVRAAIEGGLATVDGADCRKPGLKLRGGETLTLNLPQVAS 82 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD--VPRA 132 + L ++Y D+++ +++KP L VHP G P+GT++N LLH++P + + R Sbjct: 83 ETV-AEAGSLRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGLREMAGERP 141 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPISR 191 GIVHRLDKDT+GL++VA T P + L R++ + Y A+ G GG + PI R Sbjct: 142 GIVHRLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGGDIRLPIGR 201 Query: 192 HPTKRTHMAV-HPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAHITHPLV 248 P RT MAV H G+PA + +R + + L + + TGRTHQIRVHMA I HP++ Sbjct: 202 DPKYRTKMAVPHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVHMAAIGHPII 261 Query: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 GD VYG P + R RQ LHA L HP+ + P P D Sbjct: 262 GDAVYG--PHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPPPPDF 316 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 164/315 (52%), Gaps = 20/315 (6%) Query: 1 MAQRVQ-LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M Q+ + L ++E Q GQ L L S+ I++W+ Q++ VN + V Sbjct: 1 MNQKGRGLEILINEKQDGQWLFSVLKTALK-ASKPVIQDWMSHQQIKVNHESVLN-NMIV 58 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G++V I+ + E + P+ LDI++ED ++IINKP + HP GT+ N + Sbjct: 59 KKGDRVFIDLQESEASSVIPEYGELDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLI 118 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 ++Y + + VHRLD+DT+G +V AK A L + L+++ + R Y A+A G + Sbjct: 119 AYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKL 178 Query: 180 -TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQI 236 T GT++ PI R + T V P G+ AVTH+++M + + L LETGRTHQI Sbjct: 179 RTKKGTINSPIGRDRSHPTRRRVSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH+A + HPL GD +YGG + +RQALHA ++ HPI+ + Sbjct: 239 RVHLASLGHPLTGDSLYGGGSK--------------LLNRQALHANKVQAVHPITDELIV 284 Query: 297 WHAPIPQDMVELIEV 311 AP P DM L Sbjct: 285 AEAPFPADMKNLCRT 299 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 113/315 (35%), Positives = 179/315 (56%), Gaps = 11/315 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDY--SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE 63 +L TV E+Q G RLD+ + + P SRSR+++WI +L++G VC KP K+ G+ Sbjct: 4 ELLFTVQESQAGSRLDRLVMQNIPRPAPSRSRVQDWIRKGNILLDGTVCLKPAHKLSAGQ 63 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V + EE EP LDIVY D +++++NKP L VHP + +P T+++ LL+ Sbjct: 64 TVQV-LAREENEDLEPVAGKLDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHYLLYAC 122 Query: 124 PPIA---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P + D R GIVHRLDKDTTGLMV A A+ L R + + Y A+ G + Sbjct: 123 PGLRLMTDRQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALVCGALK 182 Query: 181 AG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEH--FRVHTRLRLRLETGRTHQIR 237 G ++ P++R R +A G+ A T Y++++ + + +++++ TGRTHQIR Sbjct: 183 QDEGIINVPLARDQQSRARVAPSREGRSARTAYKVLKRDPSGLWSLVQVQIFTGRTHQIR 242 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH +H+ HP++GD +YGG G + F+S L RQ LH++ L + HP+S +E+ Sbjct: 243 VHFSHLNHPVLGDRIYGGTDWDRFGWKKRFLSRL--AKRQLLHSSCLGIMHPVSRQWLEF 300 Query: 298 HAPIPQDMVELIEVM 312 + P+D + + + Sbjct: 301 ISRPPRDFIRTLLWL 315 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 21/316 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M ++ + +S ++ QRLD L+ + ++S+ ++ IL Q+VLVN K + Sbjct: 1 MNEKKE--FLISASEAFQRLDHFLSAHI-NLNKSQCQKLILAQQVLVN-TKSSKKSYLLK 56 Query: 61 GGEQVAINAEIEEEARF--EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 + + + E+ PQ++ LDI+YED + +INKP +LVVHP T++N Sbjct: 57 PQDLITVIIPQTHESINLQTPQNLNLDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNG 116 Query: 119 LLHYYPPIA--DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 LLH + ++ D R GIVHRLDK+TTGL++VAKT +L + Q+R+IT+ Y A+ Sbjct: 117 LLHQFNTLSHIDTQRPGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIE 176 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G + G + PI R+ R M V P GK AVTH++ ++ F + + LETGRTHQ+ Sbjct: 177 GFLEDKGIIKLPIGRNNHNRLKMQVMPDGKTAVTHFKTLQRFSHFSLMECNLETGRTHQL 236 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 R H + + HP+VGD +Y Q LH+ +L+ HPI+ + Sbjct: 237 RAHFSFLKHPIVGDLLYDSSHHITPLG-------------QFLHSKILKFNHPITNQNLI 283 Query: 297 WHAPIPQDMVELIEVM 312 AP+P + +L++ Sbjct: 284 LEAPLPTNFEKLLKTF 299 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 162/312 (51%), Gaps = 13/312 (4%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWI-LDQRVLVNGKVCDKPKEKVLGGEQV 65 L V + G+ + L SRS + + + VNG KV G+ V Sbjct: 13 LAVEVGADMAGKDVRTVLERKL-GVSRSLLSRLKLTEYGITVNGVRAY-TTAKVTEGDSV 70 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 AI E E PQD+PL IV+ED+ ++++NKP ++VHP G+ T+ N ++H++ Sbjct: 71 AIRMEEEISEDILPQDLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIVHHWQV 130 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGT 184 + R VHRLD+DT+GL+V+AK +L E LQ I + Y A G A GT Sbjct: 131 RGERVRFRPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPSPADGT 190 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAH 242 V PI R+P V P G P+VTHY+ F +++RL+LETGRTHQIRVHM H Sbjct: 191 VGAPIDRNPEDPHVRIVTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQIRVHMKH 250 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I PL+GD +YG + A RQALHA L L HP++ EW A +P Sbjct: 251 IGCPLIGDGMYGLQTGKVDEWETA-------AGRQALHAETLGLTHPMTKEWSEWTAALP 303 Query: 303 QDMVELIEVMRA 314 D+V+L +R Sbjct: 304 PDLVQLELALRE 315 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 20/310 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 TV + L S +++++ +VL+NG + V G++++ Sbjct: 2 FKLTVPFATTSTSVRDFLKSA--GISLTQLRKIKRQGQVLINGHPVKSFQTPVSSGDEIS 59 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 I+ +++ P +PL IVYED+ ++I+NKP L+VHP + + T+ + +L+Y Sbjct: 60 IDYG--DDSCLTPMKMPLHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSK 117 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTV 185 + +HRLD++T+GL+ +AK Q L + + R Y AV G ++ G + Sbjct: 118 GALGAFHPIHRLDRNTSGLVAIAKHPHIQHALSGGGAKG-LKRLYLAVVTGIPSSLMGRI 176 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D PI RHP V G+PA+T YR++ F + + + L L TGRTHQIRVH++HI H Sbjct: 177 DAPIGRHPNSIIKRVVRSDGQPAITLYRVLSTFSMASLVELELLTGRTHQIRVHLSHIGH 236 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +YGG RQALHA L HP + + +P+P D+ Sbjct: 237 PLLGDDLYGGATD--------------LIRRQALHAASLSFRHPATDKVLTLTSPLPPDL 282 Query: 306 VELIEVMRAD 315 +LI+++R Sbjct: 283 ADLIQLLRQK 292 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 +L ++ Q G+RLD+ L P+ SR+ +++ + V+G +P K+ G+ V Sbjct: 3 RLQLKITAGQAGKRLDRILGATVPELSRAALQKVVQAGCCTVDGLPEKRPAAKMRMGQTV 62 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ E R +P++ L+++++D+ +++ NKP L VHP P+ T++ LL +P Sbjct: 63 TLDLP-EHPDRLQPEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLLGRFPQ 121 Query: 126 IA--DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG 183 ++ + R GIVHRLDKDT+GL+VVA T L + R++ +EY A+ G G Sbjct: 122 LSRLEGQRPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSGLPPLEG 181 Query: 184 TVDEPISRHPTKRTHMAVHP---MGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRV 238 EP+ RHPT + MAV P G+ A T +R + + + L +R+ TGRTHQIRV Sbjct: 182 QCREPLGRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGRTHQIRV 241 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HM H+ +PL+GD +Y + + RQ LHA L HP SG +M + Sbjct: 242 HMTHLGYPLLGDRLYAPK------------AVQNMAPRQMLHAWRLGFTHPASGEDMRFT 289 Query: 299 APIPQDM 305 P P DM Sbjct: 290 CPPPHDM 296 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 168/309 (54%), Gaps = 20/309 (6%) Query: 11 VSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 V +GQRLD RSR++ WI D R +NG+VC K +++ G+ + + Sbjct: 8 VGVADVGQRLDVFWQTCLEEEGVGRSRVQAWIKDGRARINGQVCSKAATRLMPGQTLTLA 67 Query: 69 AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI-- 126 ++ P D PL++ + DED++++NK + VHP + T+++ + H++P + Sbjct: 68 -PEYTDSSVVPDDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEPTLVHRVAHHFPALLS 126 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 R GIVHRLDKDT+GL+V+A + A+ L ++ RE+ +EY A+ G + GTV Sbjct: 127 QSGERPGIVHRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAGVPDSSGTVS 186 Query: 187 EPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAHI 243 + RHP+ +T MAV G+ A T + ++ + +R+R+ TGRTHQIRVHMA + Sbjct: 187 LALGRHPSIKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGRTHQIRVHMAAL 246 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL+GD VY + + RQ LHA LR HP S ME+ AP P Sbjct: 247 GHPLLGDAVYADKQTAAR------------APRQMLHAWQLRFEHPRSFESMEFCAPPPD 294 Query: 304 DMVELIEVM 312 D ++++ + Sbjct: 295 DFLQVLREL 303 >UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae RepID=Q2IJ40_ANADE Length = 353 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 170/318 (53%), Gaps = 10/318 (3%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + T V G RLD AL + P+ SR+R++ + RV V+G K ++ GGE + Sbjct: 23 RRTLHVPPELAGARLDAALVRLAPELSRARVQRLVEAGRVQVDG-RAAKASARLRGGEAI 81 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP- 124 A+ E + QD+PL +++ED D+I+++K +VVHP G P TV+NALLH Sbjct: 82 ALEIPPPEPSGLVAQDLPLAVLHEDADLIVLDKAPGMVVHPARGTPHSTVVNALLHRLGL 141 Query: 125 -----PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 P +PR G+VHRLDKDT+G +VVAKT A L + R + + Y A+ G + Sbjct: 142 PAAAGPDGALPRLGLVHRLDKDTSGCLVVAKTEAALAALQAQWKGRSVEKVYLALCHGAL 201 Query: 180 TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFR-VHTRLRLRLETGRTHQIR 237 A G +D P RHP R + A+T +R+ E F + + L TGRTHQIR Sbjct: 202 AAAGRLDTPYGRHPRDRLRFTGRLASSRRAITEWRVREAFGPAASLAEVTLHTGRTHQIR 261 Query: 238 VHMAHITHPLVGDPVYGG-RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 VH++ HPL+GD VYGG R + RQALHA L L HP +G + Sbjct: 262 VHLSEAGHPLLGDAVYGGTRREARLAPDDPARRAAEAVGRQALHALRLGLDHPRTGRRLV 321 Query: 297 WHAPIPQDMVELIEVMRA 314 AP+P D+ +E++RA Sbjct: 322 VEAPVPADLRAALEILRA 339 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 21/306 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V EN+ G L+ L +S+ I+ + +LVNG K + G+ + Sbjct: 1 MRLVVGENEKGVILENFLRN--KGFSKRLIRIYKWQGEILVNGIK-SNVKRILQPGDVID 57 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E ++ P+ + LDI YEDE+I+I+NKP ++VVHP GT+ N + Y+ Sbjct: 58 LILP-ENDSNIAPEKLDLDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAWYFKEK 116 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVD 186 V+RLD+ T+GL+V AK Q L + +T+ Y AV G M G +D Sbjct: 117 GLKALIRPVNRLDRGTSGLVVFAKRPFMQYYLQ---IIKPMTKLYFAVVEGKMEGEGRID 173 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PISR P V G A+T+Y++++ + + L++++ETGRTHQIRVH++HI HP Sbjct: 174 LPISRKPQSGIERMVSEEGDRAITNYKVVKSSKRFSLLKVKIETGRTHQIRVHLSHIGHP 233 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 +VGD +YG RQALHA L HP+ + ++P+PQD+ Sbjct: 234 IVGDTLYGSSDDY--------------IKRQALHAYRLTFVHPLEEKSISVYSPLPQDIQ 279 Query: 307 ELIEVM 312 L+++ Sbjct: 280 NLLKLF 285 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 9 ATVSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V + G+RLD+ L++ SRSRI +WI +RV V G +C + K KVL G++V Sbjct: 15 FVVEAGEAGKRLDKFLSDRLADLGVSRSRISQWIRQERVRVAGALCLQGKTKVLNGQKVV 74 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + A + + +P+ P+++VY D D++++NK + VHPG G GT+++ L YP + Sbjct: 75 LLAPSLQ-SGIKPEVGPVEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLAALYPEL 133 Query: 127 A--DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 A D R G+VHRLDKDT+GL+ VA A+ L S RRE+ +EY + G A GT Sbjct: 134 ARFDGERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHGRPEAEGT 193 Query: 185 VDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMA 241 VD P+ R P + MAV P GK A+T ++ + + LR+R+ TGRTHQIRVHMA Sbjct: 194 VDHPLGRDPQSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRTHQIRVHMA 253 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 ++ PLVGD +YG + + S ++ L LHA L HP SG + + Sbjct: 254 YLGFPLVGDALYGPQAQAAFQRSRPLLARL--AKHHMLHAWRLAFPHPRSGRMVCCEQAM 311 Query: 302 PQDMVELI 309 P+ M L+ Sbjct: 312 PKAMWRLV 319 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 20/307 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWI-LDQRVLVNGKVCDKPKEKVLGGEQ 64 QL V++ Q G + + L + S++ + + R+ VN + + G++ Sbjct: 3 QLRWIVTQQQDGMLVREFLKQQ--HISKTALTDIKFQGGRIEVNDVPVT-VRYVLKAGDE 59 Query: 65 VAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 V ++ E++ A + IPL IVYED+ +I+INKP + P +P GT+ NALLH+Y Sbjct: 60 VCVSFPPEQKGANMVAEPIPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALLHHY 119 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG- 182 +V RLD+DT+GL++VAK L E ++ + R YEAV G++ Sbjct: 120 EQQQLQTTVHVVTRLDRDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVIQLV 179 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 GT+D PI R V G+ AVTHY +++ T + ++LETGRTHQIRVH +H Sbjct: 180 GTIDAPIGRKGDSIIEREVRLDGQRAVTHYEVLQQKNEMTHVSIQLETGRTHQIRVHFSH 239 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HPLVGD +YGG DRQALH+ L +HP M +HAP+P Sbjct: 240 IGHPLVGDDLYGG--------------LREHIDRQALHSCELTFFHPFFEKTMTFHAPLP 285 Query: 303 QDMVELI 309 D+ L+ Sbjct: 286 DDIARLL 292 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 161/316 (50%), Gaps = 11/316 (3%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV + G R+D L + F Y+ RI + V ++G+V ++V G+QV I Sbjct: 7 TVTVEKYLAGVRVDSFLVKHFRSYTSWRILRMVAAGLVTIDGQVAA-TTQRVHPGQQVTI 65 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + P+ PL+I++ED+ +++INKP L+ HP PDGT++NA+ HY + Sbjct: 66 QLTEPPDLFVPPEPTPLEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAVQHYLDKQS 125 Query: 128 ---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG- 183 + R GIVHRLD+DT+G M + K + L Q I++ Y A+ G +T Sbjct: 126 THPGLERPGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVEGVLTDDQL 185 Query: 184 TVDEPISRHPT-KRTHMAVHPMGKPA---VTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 +D PI R P M+ A T R++E F HT + + TGR HQIR+H Sbjct: 186 VIDLPIGRAPGCSSALMSCRADALEAQASKTSLRVVERFPQHTLVEAKPRTGRMHQIRIH 245 Query: 240 MAHITHPLVGDPVY--GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 +A I P+VGD Y GG RP + +RQALHA L HP++ ++ Sbjct: 246 LATIGFPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHPLTNEWQDF 305 Query: 298 HAPIPQDMVELIEVMR 313 AP+P D+ + IE+ R Sbjct: 306 QAPLPDDLRQAIELAR 321 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 118/325 (36%), Positives = 165/325 (50%), Gaps = 16/325 (4%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 A++ + G RLD+ A SR R++EWI LV+G+V + K K+ Sbjct: 13 AEKRTWERVAPSSDCGLRLDKFWARELADEGVSRGRVQEWIESGLALVDGEVVTRGKHKL 72 Query: 60 LGGEQVAINAEIEEEARFEPQDIP--LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G E + I + Q +P L++V+ED + +I+K L HP G P T++N Sbjct: 73 AGRETLRIGDAGVAPSDDAAQAVPGELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVN 132 Query: 118 ALLHYYPPIA------DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY 171 LLH +P +A D R GIVHRLDKDT+GLMVVA T + RL R + + Y Sbjct: 133 HLLHRWPDVASDISGMDRQRPGIVHRLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVY 192 Query: 172 EAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF--RVHTRLRLR 227 AV +G GT+D P+ RHP+++T MAV G+ AV+ YR++ + + + +R Sbjct: 193 LAVVLGRPAQPAGTIDAPMGRHPSQKTRMAVVARGGREAVSDYRVLWTGPRGLASLVAVR 252 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 + TGRTHQIRVHMAHI HPL+GD YG R S RQ LHA L Sbjct: 253 IHTGRTHQIRVHMAHIGHPLLGDSAYGPRENV--EWSRRPDRLAGLAPRQMLHAFHLSFR 310 Query: 288 HPISGIEMEWHAPIPQDMVELIEVM 312 HP + + P D L+ + Sbjct: 311 HPATCERVTLWRRPPADFCTLLAAL 335 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 123/337 (36%), Positives = 170/337 (50%), Gaps = 36/337 (10%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + +AT+ RLD LA SRS++ WI V V G+ K K+ Sbjct: 1 MSSLLSFSATMG------RLDAVLAA-LSGASRSQVAAWIAGGHVKVEGQPVTKVSLKLR 53 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GGE++ ++ +AR E +D+PLD++YED+ +I +NKP +V HP G GT++NALL Sbjct: 54 GGERIDVSPPALPDARVEAEDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALL 113 Query: 121 HYYP-------PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 173 P R GIVHRLDKDT+G++VVAKTV A RL + + RE + Y A Sbjct: 114 GRMPLPEQPDYDSEAGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLA 173 Query: 174 VAIGHMTAGG--TVDEPISRHPTKRTHMAV-HPMGKPAVTHYRIME-----HFRVHTRLR 225 +A G A G V+ PI RHP +R M V + A T + + H R +R Sbjct: 174 IAAGQWRADGPARVEAPIGRHPVQRQRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVR 233 Query: 226 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLR 285 + TGRTHQIRVH+AH+ P++GD VYG R ALHA L Sbjct: 234 AQPRTGRTHQIRVHLAHLGSPILGDAVYGRSSETML--------------RHALHAHFLS 279 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDE 322 + HP +G + HAP P DM+ + +E Sbjct: 280 VPHPGTGRLLHLHAPAPDDMLNAWIALGGAMPSDLEE 316 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 132/314 (42%), Positives = 167/314 (53%), Gaps = 21/314 (6%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 TV RLD+ LA + +SRSR++ WI V VNG K ++ V G+ +A+ Sbjct: 24 ITVPAGTRADRLDKILAALLDGHSRSRLQGWIEAGWVQVNGAPA-KVRQVVGPGDVLAVW 82 Query: 69 A-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E F P+ I +V E D I+++KP LV HPGAGN GT+LN LLH YP +A Sbjct: 83 EQPAPESLAFTPEPIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELA 142 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDE 187 V RAGIVHRLDKDT+GLMVVA+ AQT LV LQ R + REY A+A G + G VD Sbjct: 143 RVARAGIVHRLDKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHGWLPVAGKVDR 202 Query: 188 PISRHPTKRTHMAVHP--MGKPAVTHYRIMEHF----RVHTRLRLRLETGRTHQIRVHMA 241 PI R M+V KPA+THY + T + RLETGRTHQIRVH+A Sbjct: 203 PIGRDARVPVRMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGRTHQIRVHLA 262 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HPL+ D +YGGR RQ LHA L P G + A Sbjct: 263 SLGHPLLADTLYGGR-------------LTAGATRQMLHARALHFDDPGGGGPAAFRADP 309 Query: 302 PQDMVELIEVMRAD 315 P DM ++ E ++ Sbjct: 310 PDDMRQVQEALQWS 323 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 171/329 (51%), Gaps = 33/329 (10%) Query: 8 TATVSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 T++ RLD+ L E+ DYSRS I++ I ++ + VN ++ V Q+ Sbjct: 3 KITLNSVNTTLRLDKLLVELLTSYDYSRSYIQKLIKEECISVNNQIITSNNFLVKPNSQI 62 Query: 66 AINAEIE--------------EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNP 111 I + + + +DI L+I+Y+D+D+++INK ++ VHP N Sbjct: 63 IITIKDPVLDPNITKNKDPVLDPNITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNT 122 Query: 112 DGTVLNALLH---YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 + T++NALL I R GIVHR+DK TTGL++VAK L E + +I Sbjct: 123 NNTIVNALLASDVELSSINGELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIY 182 Query: 169 REYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRL 226 +EY A+ G + G +D PI R T R M+V K A+T + ++E F +T ++ Sbjct: 183 KEYLAIVTGVIKPNKGLIDAPIGRSQTDRKKMSVTAKNSKHAITTFEVVERFLKNTLIKC 242 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL 286 +++TGRTHQIRVH +I HP++ DP+YG + + Q LHA L+ Sbjct: 243 QIQTGRTHQIRVHFNYINHPVLNDPIYGKKHQEFTDFG------------QYLHAYKLKF 290 Query: 287 YHPISGIEMEWHAPIPQDMVELIEVMRAD 315 HPI+ E+E +P+P++ + I+ +R + Sbjct: 291 THPITKKEIELISPLPKEFDDKIKELRGE 319 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 160/313 (51%), Gaps = 20/313 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIK--EWILDQRVLVNGKVCDKPKEK 58 M +LT TV+ +Q G ++D L S + I+ +W+ D +L++G ++ Sbjct: 1 MDSPRRLTLTVAPDQSGWKVDALLRGTL-GLSGTVIRRVKWLEDG-ILLDGVRVT-VGDR 57 Query: 59 VLGGEQVAINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 V G+ +++ + E P PLDIVY+D+D++++NK + VHPG G+ T+ N Sbjct: 58 VRAGQILSVVVGDTEVSGAIVPAPGPLDIVYQDQDVLVLNKAPGVAVHPGPGHYSDTIGN 117 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 L+ YY + VHRLD+ T+GL++VA AQ L E L R Y AV G Sbjct: 118 FLMDYYRKQGILADFHPVHRLDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYLAVCEG 177 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 G +D PI R V P G+ AVTHYR + +RL LETGRTHQI Sbjct: 178 APNPPSGVIDAPIGRLEGSVLARTVRPDGQRAVTHYRTLRTVNDRALVRLELETGRTHQI 237 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMAH+ HPL GD +YG + R ALHA L HPI+G M Sbjct: 238 RVHMAHLGHPLTGDFLYGTEDQ-------------SLIPRPALHAAELSFTHPITGKTMA 284 Query: 297 WHAPIPQDMVELI 309 + AP+PQDM L+ Sbjct: 285 FTAPLPQDMAALV 297 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 157/331 (47%), Gaps = 44/331 (13%) Query: 19 RLDQALAEMFPDYS--RSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR 76 RLD +A PD S R R+ I + V +NGK KP + G+ + E E + Sbjct: 2 RLDAYVAANVPDASASRGRVAAAIKARMVTLNGKTASKPSRALKPGDVIEGELERERASE 61 Query: 77 FEPQD-IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY------------ 123 +P+ + LDIV+EDE ++++NK +V HP AG+ GT++NA+L + Sbjct: 62 AKPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPELVVPTGNQ 121 Query: 124 -----------------PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166 + R GIVHRLDK T+G+MVVAK A L E R Sbjct: 122 ALSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLCEQFAARV 181 Query: 167 ITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEH--FRVHT 222 + R+Y A+ G + G ++ PI R P R MAV G+ A ++Y ++ + Sbjct: 182 VRRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVTQGGGRFAASNYEVIATLANGNAS 241 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGAS--------EAFISTLRKF 274 + RLETGRTHQIRVH HI HP++GD YGG A + + + Sbjct: 242 LVEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKEAKALMSTI 301 Query: 275 DRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 DR LHA L HP SG +++ P+D Sbjct: 302 DRPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 165/314 (52%), Gaps = 16/314 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 T TV + R D+ LA ++SR ++ V G + V G+ + Sbjct: 5 TYTVPDTIRHGRADKVLAAGVTEHSRVALQRSFDAGLVTRGGVPIGR-DTTVTAGDTIEF 63 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY----Y 123 + + + DIPL +++ED+ ++ +NK +VVHPG + T+++ALL + Sbjct: 64 SFAEIKPTEIKAVDIPLTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSL 123 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AG 182 I V R GIVHRLDK+TTG++VVAKT A L + R + +EY A+ G Sbjct: 124 SGIGGVERPGIVHRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLS 183 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH-TRLRLRLETGRTHQIRVHMA 241 G++D I+RHP R M V G+PA T + ++E F +R R+ TGRTHQIRVH+ Sbjct: 184 GSIDRAIARHPVHRHRMTVGEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLK 243 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HP++GD +YG +P P A R LHA L L HPISG E++ AP+ Sbjct: 244 SLGHPILGDALYGWKPEPRLATQPA---------RVMLHAEHLVLTHPISGKELDLRAPL 294 Query: 302 PQDMVELIEVMRAD 315 P+D V +I+ +R Sbjct: 295 PKDFVAMIKELRRS 308 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 341 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 157/314 (50%), Gaps = 18/314 (5%) Query: 1 MAQRVQL-TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M L T T+ G + L F +SR I+ +RV VNG + Sbjct: 1 MNHEQDLWTYTLQPQDDGVKYQDILYRRF-HFSRKLIQHLKQGERVWVNGAF-TFLTTRG 58 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 GE +++ + E +++PL+I+YED+ I INKP VVHP P GT+ NA+ Sbjct: 59 KAGETLSVQLQPPEINSIPGENLPLEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAV 118 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-H 178 + Y+ + +HR+D++T+G++V+ K A ++ I + Y + G Sbjct: 119 VGYWLAKGEARPFRPIHRIDRNTSGVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQV 178 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 M GT+ PI+ P + P G PAVT Y+++E ++ + L LETGRTHQIRV Sbjct: 179 MEDQGTIKAPIALAPDSFIQRQISPEGSPAVTLYKVLERYQDASLLEFILETGRTHQIRV 238 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H H+ HPL+GD +YGG L + +RQALH+++ HP++G Sbjct: 239 HCQHLGHPLLGDDLYGGN--------------LARINRQALHSSIYEFNHPLTGELTTIQ 284 Query: 299 APIPQDMVELIEVM 312 AP+P+D+ L+ + Sbjct: 285 APLPEDLQRLLREL 298 >UniRef50_Q057H9 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057H9_BUCCC Length = 321 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 126/319 (39%), Positives = 198/319 (62%), Gaps = 3/319 (0%) Query: 1 MAQRVQLTATVSE-NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M+ ++ V + + RLD+ L + +SRS IK+WIL + VN +KPK+K+ Sbjct: 1 MSNLKKINFIVPKLKEKSIRLDKILVKHLNSFSRSSIKKWILSGFIKVNNITANKPKKKI 60 Query: 60 LGGEQVAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 L +++++ + + + ++I L+I++ED +I+IINKP + VVH G GN GT+LNA Sbjct: 61 LFKDRISLIINKKSNFIKIKKENIFLNIIFEDSEILIINKPTNFVVHLGYGNTSGTLLNA 120 Query: 119 LLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 L+ +YP +PRAGIVHRLD++TTG++VVAKT+ L+ ++R+I +EY+ + IG Sbjct: 121 LIFHYPDNLLIPRAGIVHRLDRNTTGILVVAKTISTYYFLINLFKKRKIIKEYDVIVIGR 180 Query: 179 MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 + G +++PI R RT M V GK A+T+Y ++ F+ HT LR++L+TGR HQIRV Sbjct: 181 IEVDGKIEKPIKRDIYNRTKMTVGIGGKQAITYYSVITIFKNHTYLRIQLKTGRMHQIRV 240 Query: 239 HMAHITHPLVGDPVY-GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 H++ I HP++GD +Y G S+ + L KF+R ALHA ML HP + + W Sbjct: 241 HLSSIFHPVLGDKIYSKGIKSNFSNCSKKMKNFLSKFNRPALHARMLNFIHPKTNKKKNW 300 Query: 298 HAPIPQDMVELIEVMRADF 316 P+DM+ LI V+ ++ Sbjct: 301 IIYPPKDMLSLINVLYSED 319 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 169/298 (56%), Gaps = 26/298 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKV-CDKPKEKVLGGEQVAINAEIEEEAR 76 +R+D+ + + SR+ IKE I V +N V K V G+++ I + +E + Sbjct: 18 ERIDKYI-GQNSELSRNDIKELIEQGAVYINDNVQVHKCNYIVREGQEITIVKLLNKEIK 76 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP----PIADVPRA 132 EP +IPLDI YED+D++IINKP +LVVHP G+ + T++N LL+++ + R Sbjct: 77 IEPVNIPLDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLSNENGLLRP 136 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISR 191 GIVHR+DKDT+GL+++AK L + L+R EI R Y A+ G + T ++ PI+R Sbjct: 137 GIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLTKINLPIAR 196 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPL 247 + R M+VH GK A+T +++HF + +R L+TGRTHQIRVH+++I HP+ Sbjct: 197 NTVDRKMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIRVHLSYIKHPV 256 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 GDP YG Q LHA L+ HP++ E+ +AP+P++ Sbjct: 257 YGDPTYGKSVDEFN---------------QRLHAYKLKFIHPLTKKEICVYAPVPKEF 299 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 165/318 (51%), Gaps = 22/318 (6%) Query: 16 LGQRLDQALAEMFPDY-SRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 G RLD+A+A + P+ +RSR + VL+NGK K + + + I E Sbjct: 2 SGLRLDKAMA-LIPEIGTRSRASHLLESNSVLLNGKPA-KASVAIKENDLIEIQLPEPEP 59 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY---YPPIADVPR 131 +P D+ LD+++EDED+I+INKP LVVHP AG+ T++NAL+H+ R Sbjct: 60 TELQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSMKFGEER 119 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPIS 190 GIVHRLDK+T+G++V+AK A L + R R Y AV +G T G+V ++ Sbjct: 120 PGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGSVRSFLA 179 Query: 191 RHPTKRTHMA----------VHPM-----GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 RHP R A P GK AVTH+ +++ + L+L+LETGRTHQ Sbjct: 180 RHPVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQRKSGMSYLKLKLETGRTHQ 239 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVHM+ P+ GD +YG + + A LR R LHA L HP + M Sbjct: 240 IRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHPRTKERM 299 Query: 296 EWHAPIPQDMVELIEVMR 313 + P+D++ LI+ Sbjct: 300 FFTKDWPEDVLVLIKKWG 317 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 162/314 (51%), Gaps = 11/314 (3%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 V++ QR+D+ ++ + SR+R + I +V ++G+V + G+ I Sbjct: 6 EVCVTKEDDQQRIDKLISCAL-EISRNRAQGLIAGGQVTISGRVINNNSYLTKTGDVYTI 64 Query: 68 NAEIEEEARFEP-QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY--- 123 +++ + P DI L +VYED D+I+I+K + VHPG G T+ NALL + Sbjct: 65 VTAVQKPSTLSPNYDIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALLARFGAG 124 Query: 124 -PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TA 181 + R GIVHRLDKDT+GLMV AKT A RL E L + +EY AVA G Sbjct: 125 LQSVGSSSRPGIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVAWGIPCPK 184 Query: 182 GGTVDEPISRHPTKRTHM-AVHPMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIRVH 239 G + I + T M A + GKPA T Y + + + +R L TGRTHQIRVH Sbjct: 185 RGVIHTNIRVKRSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLHTGRTHQIRVH 244 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 M+HI H +VGD YG K ++ F RQALHA++L HP +G +E+ + Sbjct: 245 MSHIGHSIVGDQKYG--KNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPSTGKYIEFTS 302 Query: 300 PIPQDMVELIEVMR 313 D+ +LI + Sbjct: 303 KPADDIQQLISALE 316 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 168/333 (50%), Gaps = 37/333 (11%) Query: 1 MAQR----VQLTATVSEN--------------QLGQRLDQALAEMFPDYSRSRIKEWI-L 41 M+Q ++ V N G L L ++ S+ + + Sbjct: 4 MSQSESMSCKIEWVVPANVVSSNACSSINEGINEGILLRTFLRDVI-GISKKSLADIKFK 62 Query: 42 DQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPR 100 ++LVN K + + G++V + E + P+ IPLDI YED+ +++INKP+ Sbjct: 63 GGKILVNQKEVT-VRTTIFSGDRVEVYVPPEPKNESLRPECIPLDIHYEDDHLLVINKPQ 121 Query: 101 DLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE 160 + P +P T+ NA++ YY V+RLD+DT+GL+VVAK A +L + Sbjct: 122 GMPTIPSREHPSRTLANAVMGYYESHHIPFTFHAVNRLDRDTSGLLVVAKHGLAHDQLSK 181 Query: 161 SLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR 219 + ++ R Y A+A G + GT+ PI R P+ V G+ A+THY+++ + Sbjct: 182 GQRAGKLKRYYLALAEGFVQPREGTIHAPIKRRPSSIIERMVAADGQEAITHYKVINDNQ 241 Query: 220 VHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQAL 279 ++ + + LETGRTHQIRVH AH+ HPL+GD +YGG ++ RQAL Sbjct: 242 AYSEVEINLETGRTHQIRVHFAHLGHPLLGDDLYGG--------------SIELLARQAL 287 Query: 280 HATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 H + L HP +G + + AP+P+D++E+ + + Sbjct: 288 HCQRVELIHPFTGKHLHFSAPLPKDLIEVKDKL 320 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 110/321 (34%), Positives = 167/321 (52%), Gaps = 18/321 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M++ + + V E R+D AL+++F SR+ + VL++GK K +K+ Sbjct: 1 MSRETR-SLPVPEGLADMRVDVALSKLF-GLSRTVSADLATKGDVLIDGKPATK-SDKIT 57 Query: 61 GGEQVAINAEIEEEARFEPQDI--PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 G + + ++ +++ L+I+Y DED+I ++KP + HP G TV+ Sbjct: 58 DGAWLEVLLPEPQKPLVPTEELVDGLEILYADEDLIAVDKPVGVAAHPTVGWDGPTVVGG 117 Query: 119 LL---HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 L + R GIV RLD T+G+MVVA + + L + + R +++ Y A+ Sbjct: 118 LAAAGYRISTSGPPERNGIVQRLDVGTSGVMVVAASERGYSVLKRAFKERTVSKTYHALV 177 Query: 176 IGHM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 GHM GT++ I RHP+ AV GK AVTHY +E F + L + LETGRTH Sbjct: 178 QGHMDPLAGTIEANIGRHPSSGWKFAVTSDGKHAVTHYETLEAFVAASLLEVHLETGRTH 237 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM+ + HP GDP+YG P+ +S +RQ LHA L YHP G Sbjct: 238 QIRVHMSALHHPCCGDPMYGADPQ---------LSARLGLNRQWLHAVKLGFYHPADGRW 288 Query: 295 MEWHAPIPQDMVELIEVMRAD 315 +E +P P D+ +EV+RA+ Sbjct: 289 LEIESPYPPDLRHALEVLRAE 309 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 170/302 (56%), Gaps = 23/302 (7%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +R+D L++ + +RSRI+E I +LVNGK K KV G+++ I+ + +E Sbjct: 11 ERIDIYLSKKLDE-TRSRIQELIKSNNILVNGKK-TKASYKVNFGDEIFIDIPLLKEVDI 68 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP---IADVPRAGI 134 PQDI +DIVYED+ + IINK +VVHP G+ + T++NA+++ I R GI Sbjct: 69 IPQDIDIDIVYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGINGDLRPGI 128 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHP 193 VHRLDK+T+GL+++AK +L E + +EI + Y A+ G + G ++ I R+P Sbjct: 129 VHRLDKNTSGLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIETMIGRNP 188 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 R MAV GK A+T++ +++ + L++ LETGRTHQIRVH++H P++GD VY Sbjct: 189 NDRKKMAVVDNGKLAITNFEVIDSNEKFSLLKVDLETGRTHQIRVHLSHFFFPILGDSVY 248 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE--V 311 G + +DRQ LHA ML HPI+ +++ D + + Sbjct: 249 GRKDE---------------YDRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRALSNTK 293 Query: 312 MR 313 +R Sbjct: 294 LR 295 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 114/323 (35%), Positives = 159/323 (49%), Gaps = 22/323 (6%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKVLGG 62 + L + + G+ L +SR + + + NG E++ G Sbjct: 6 KRILNYQIEKEWEGESAAAFLRA--KGFSRHILTHLKQTEGGICRNGSRI-WLSERLHFG 62 Query: 63 EQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + + E + P + LDIVYEDED+++I+KP D+ VHP N D T+ N L + Sbjct: 63 DVLTVTFLEERSSENIVPVPMKLDIVYEDEDLLVIDKPADMPVHPSIHNFDNTLANGLAY 122 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 YY + + RLD+DTTGL++VAK + + L E +RREI REY A+ G A Sbjct: 123 YYESRGEAFVYRCITRLDRDTTGLLLVAKNMLSGAFLAEMGKRREIHREYLAIVTGKTEA 182 Query: 182 GGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GTVD PI+R V G+ AVTHYR +E+ ++ +RL+LETGRTHQIRVHM Sbjct: 183 EGTVDAPIARVEGSVLERCVDFQRGERAVTHYRTLEYRDGYSLVRLKLETGRTHQIRVHM 242 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 +I HPL GD +Y R D QALH+ L HPI+G ME+ + Sbjct: 243 KYIGHPLTGDFLY--------------NPDYRLMDHQALHSHYLAFRHPITGERMEFTSQ 288 Query: 301 IPQDMVELIEVMRADFEEHKDEV 323 P L E D EE Sbjct: 289 PP--WQGLWEGREEDGEETLKSC 309 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 92/314 (29%), Positives = 161/314 (51%), Gaps = 18/314 (5%) Query: 2 AQRVQLT-ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 + ++T +S+ + G L L SR I++ + R+ +N + + K+ Sbjct: 11 KNKEEITSYRISDEEAGVTLYTFLKNRLK-MSRKFIRKMGREYRIRLNCRYVKFTEVKLN 69 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ + N +E+ ++P + LDI+YED +++INKP +++VHP T++N +L Sbjct: 70 SGDLIEFNLNFKEKTYYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVL 129 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 ++ + +HRLD++TTGL+++AK A + Q I REY A G++ Sbjct: 130 YHMRNQGNYNLVRPIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVE 189 Query: 181 -AGGTVDEPISRHPTKRTHMAVHPM-GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 +++ PI + V GK AVTH ++++ + + +R++LETGRTHQIRV Sbjct: 190 FKKESINAPIGKTRDSLIKRKVDHTLGKRAVTHIKVVKPGGLISLIRVKLETGRTHQIRV 249 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H++H+ HPL+GD +YGG R ALH+ + P E+ + Sbjct: 250 HLSHLGHPLLGDTLYGGED--------------ILIKRPALHSYKVTCCLPFKHKEVTFK 295 Query: 299 APIPQDMVELIEVM 312 AP+P DM +L + + Sbjct: 296 APLPVDMEKLKKQL 309 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 27/313 (8%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 + + ++E+ +G+RLD ++E + +RS++K ++ ++VN K + + + Sbjct: 30 KKSFIITEDDIGKRLDTFISEKL-NITRSQVKNYLTS--IIVNDA-EKKLSYSLKLNDNI 85 Query: 66 AIN-----AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 I+ E + A P++I LDI+YED+ +++INKP + VH GT++NALL Sbjct: 86 IIDSDNIFKEKTDTANPIPENIDLDILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNALL 145 Query: 121 HYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + + + RAGI+HRLDKDT+GLM++ K + + E + R I + Y A+ +G Sbjct: 146 YKIKDFDFVGNKERAGIIHRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVVG 205 Query: 178 HMTAGG-TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + ++ PI RH R M V GK A+TH ++++ F HT + + L+TGRTHQI Sbjct: 206 VLKDNYIEINLPIGRHHVYRKKMTVREDGKEALTHIKVLKRFNSHTLIEINLKTGRTHQI 265 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH ++ P+ GD +Y + K+ L A + HPI+ ++ Sbjct: 266 RVHSSYKGFPVAGDKIY--------------SKSFSKYSGLMLVAKKIEFMHPITKELLD 311 Query: 297 WHAPIPQDMVELI 309 + P + Sbjct: 312 FEIDYPDYFTNFL 324 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 114/320 (35%), Positives = 165/320 (51%), Gaps = 24/320 (7%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI-NAEIEEEARF 77 RLD LA+ SRSRI E I V+VNG V KP K+ G++V Sbjct: 37 RLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPSHKLDIGDRVICGEIVASPPTEV 96 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA---------- 127 P++IPLD+V+ED+ ++++NKP +VVHP AG+ G+++NALL + + Sbjct: 97 APENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRGDDASKMI 156 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVD 186 DVPR G+VHR+DK T+GL+V+AK AQ L R + R Y A+ +G G +D Sbjct: 157 DVPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRID 216 Query: 187 EPISRHPTKRTHMAVHPM--GKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAH 242 PI R P R MA+ G+ A++++ + + + +LETGRTHQIRVH Sbjct: 217 APIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQIRVHARE 276 Query: 243 ITHPLVGDPVYGGR--------PRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 + HP+VGD YGG R ++ A + K R LHA L HP++G E Sbjct: 277 MGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFRHPVTGEE 336 Query: 295 MEWHAPIPQDMVELIEVMRA 314 + + P D V+ + Sbjct: 337 ISFAVEPPPDFVDAFTELSK 356 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 101/316 (31%), Positives = 157/316 (49%), Gaps = 17/316 (5%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 +T V Q L + L D S + + +R+L+NG+ K E + Sbjct: 7 QNERMITYEVEAEDDQQPLKETLKNRL-DLSSRLLTKLKKSKRILINGQYA-KYHELLSE 64 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ + I+ EE ++FEPQ+IP ++VYED D+I+INK +V HP +P T+ NA + Sbjct: 65 GDWIKIDM-TEEASQFEPQEIPFNVVYEDIDVIVINKEPGIVSHPTKSHPKDTIANAAQN 123 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMT 180 Y R V+RLD DT+GL+V+AK + + ++ EIT++Y A G + Sbjct: 124 YLEKKGVACRIRFVNRLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVVA 183 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G +D I R + V G+ ++T + ++E + T L + L TGRTHQIRVHM Sbjct: 184 NEGEIDGAIYRSSDETIKRVVDDRGQQSLTKFTVLERYADATMLEVSLLTGRTHQIRVHM 243 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 I HP++GD +YG RQALHA+ L P ++E A Sbjct: 244 ESIGHPMLGDHLYG-------------YVDTELIRRQALHASYLSFLQPRYKEKIEVRAS 290 Query: 301 IPQDMVELIEVMRADF 316 +P+D+ EL ++ + Sbjct: 291 LPKDLNELRNKLKDEL 306 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 104/321 (32%), Positives = 164/321 (51%), Gaps = 13/321 (4%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++ + RLD+ +A + SR+++++ I D ++L+ + + Sbjct: 16 LEKKIFIKSGDENNRLDKFIASKL-NISRNQVQQLIKDSKILLFDTIIRDNNHITKVNDI 74 Query: 65 VAINAEIEEEARFEPQD--IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 I+ I+ + + IP+ +VYED DIIIINK + VHPGAG + T++NAL+ + Sbjct: 75 YNISIPIKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNALVAH 134 Query: 123 YPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 Y R GI+HRLDKDT+GLMV+AK + L + L +++I +EY AV G Sbjct: 135 YGNSLSHVGKATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGL 194 Query: 179 M-TAGGTVDEPISRHPTKRTHMAVH---PMGKPAVTHYRIMEHFRV-HTRLRLRLETGRT 233 T+ I P + M V GK A+T Y+ + F + ++ R+ TGRT Sbjct: 195 PNPKSNTIKNYICVKPNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIHTGRT 254 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVHM++I + ++GD YG + + + RQALHA L HP S Sbjct: 255 HQIRVHMSYIGNSIIGDQKYG-KNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPTSNT 313 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 +E+H+ IP D+ LI+ + Sbjct: 314 YIEFHSYIPNDIQMLIDELEQ 334 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 25/319 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPD----YSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 + T VS + R+D+ L + F +SR++I+E I ++V VNG+V + Sbjct: 3 KFTLIVSSSA---RIDKILTDYFKTNTTPFSRTKIQELIKQEKVQVNGQVV-RANYVSQI 58 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 G+ V I + + P IPL I+YED +++I+KP +LVVHP G+ + T++NALL Sbjct: 59 GDHVIIEFPSAKASELTPLAIPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLA 118 Query: 122 Y---YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 + + R GIVHR+D+ TTG +++AK +L + +Q +++ R Y A+ G Sbjct: 119 RGVQWSTASGEQRPGIVHRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQ 178 Query: 179 M-TAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + +D PI R P R M V K A+T+ ++E F +T + LE+GRTHQI Sbjct: 179 IIENRAKIDAPIGRDPNNRKKMVVTAKNSKKALTNIVVIERFNDYTYIECELESGRTHQI 238 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 R H+ +I HP+VGDP+YG + Q LHA LR HP++ + Sbjct: 239 RAHLKYINHPIVGDPLYGTVADKKESFG------------QYLHAYQLRFIHPVTKESLT 286 Query: 297 WHAPIPQDMVELIEVMRAD 315 A +PQ+ + + ++RA Sbjct: 287 ITAALPQEFEQRLAILRAK 305 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 336 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 113/321 (35%), Positives = 174/321 (54%), Gaps = 21/321 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLV-----NGKVCDKPKEKVLGGEQVAINAEIE 72 +R+D LA + P+ SRS + ++RV + + + D+ KV G+Q+ I+ E Sbjct: 1 KRIDAVLAALEPEMSRSFCGNLVANKRVSIIQENGDNCLVDRKSFKVEPGQQLIISLPRE 60 Query: 73 E-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADV-- 129 E + QD+PLDI++EDE +I+INK ++VVHP AGN DGTV+NAL +Y ++ Sbjct: 61 EGASEIIAQDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLANRSESIS 120 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 R GIVHRLDK TTG++VVAKT L R++ + Y A+ +G+ +D+PI Sbjct: 121 FRPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKHVVIDKPI 180 Query: 190 SRHPTKRTHMAVHPM-------GKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 RHP R M V P G+ A+++ + + +++R+ETGRTHQIRVH+ Sbjct: 181 GRHPLHRQRMRVVPDPHQKNSTGRRALSYVDTLAFDGKLSLVQVRIETGRTHQIRVHLQD 240 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 P+ GD +YG K +S + R LHA L + HP++G M + A + Sbjct: 241 RHTPIYGDDIYGLADWNKK------LSKTHRIVRPLLHAYKLEINHPVTGEPMVFKASLA 294 Query: 303 QDMVELIEVMRADFEEHKDEV 323 DM + + D E+ ++ Sbjct: 295 DDMKRITTTIYPDSEKEIPDL 315 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 336 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 20/317 (6%) Query: 1 MAQRVQL-TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 M ++ + TV G +D L E + + + + +++ ++VNG+ E + Sbjct: 3 MKRKGEWCEITVPTKWSGMSIDSLLKEEW-GIPKKLLHKLRMEKGIIVNGER-KVWSEML 60 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+++ ++ +EE +P+ L++++ED+ ++I+NKP + HP GT+ N + Sbjct: 61 QEGDKLQVHMFAQEEYGVQPEYGDLEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLV 120 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + + +HRLDKDTTG +V AK A + L R I R Y A+ G + Sbjct: 121 AFHLQMQGVETKVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKV 180 Query: 180 -TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQI 236 G +DE I R T V G AVTHY+I ++F+ T + L+LETGRTHQI Sbjct: 181 RKKQGIIDEAIGRDRHHATRRRVSQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQI 240 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM+H HPL+GD +YGG+ QALHA + HPI+ E+ Sbjct: 241 RVHMSHSGHPLIGDVLYGGQATY--------------MPYQALHAMRIHFLHPITKEEIT 286 Query: 297 WHAPIPQDMVELIEVMR 313 AP+P ++ +IE + Sbjct: 287 VEAPLPNNLNNIIESFK 303 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 100/298 (33%), Positives = 164/298 (55%), Gaps = 26/298 (8%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKV-CDKPKEKVLGGEQVAINAEIEEEAR 76 +R+D+ +++ + +R+ K I + V V+ + KP V G + + +E+E+ Sbjct: 10 ERIDKYISDN-SEITRNDAKALIEQEAVYVDDRKFVRKPNYMVREGMVITVLRLLEKESN 68 Query: 77 FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP----PIADVPRA 132 E D+PLDI YEDE ++I+NKP LVVHP G+ + T++NAL++++ + R Sbjct: 69 IEAVDMPLDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLSDANGLLRL 128 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISR 191 GIVHR+DKDT+GL+++AK L + L+ +I R Y A+ G + T ++ PI R Sbjct: 129 GIVHRIDKDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTTKINLPIQR 188 Query: 192 HPTKRTHMAVHPMGKPAVTHYRIMEHF----RVHTRLRLRLETGRTHQIRVHMAHITHPL 247 R M++H GK +VT+ +++ F + ++ ++ LETGRTHQIRVH+A+I HP+ Sbjct: 189 DTKNRKLMSIHKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIRVHLAYIKHPV 248 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 GD +YG Q LHA L HP+ +E ++ IP++ Sbjct: 249 YGDSIYGKSVDEFN---------------QRLHAYKLSFMHPVINKLIEVYSDIPKEF 291 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 122/331 (36%), Positives = 168/331 (50%), Gaps = 24/331 (7%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + V E +G RLD+ L YSR+ ++ I RV VNG+V + + G+ V + Sbjct: 16 SFVVDERLIG-RLDKGLVLHNNAYSRAFYQQQIDLGRVRVNGRVQTRASYLLSQGDLVDL 74 Query: 68 NA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 E E + P++IPLD VYED I++INKPR++VVHP G+ GTV++ALLH Sbjct: 75 ELVEEETPSSLTPENIPLDKVYEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGER 134 Query: 127 ------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 + R GIVHRLDKDT+GL++ KT A+ E +++ + Y A+ I Sbjct: 135 LKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKAVYSELFSSKQMKKMYIAICINS-P 193 Query: 181 AGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 A + I+RHP KR M V GK A+TH ++ + + L ETGRTHQ+ Sbjct: 194 AQKHIHTRIARHPVKRKEMTVLSKDTEGGKEAITHCHVLASNGRLSVVALYPETGRTHQL 253 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHM H+ P++GDPVYG I+ D+Q LHA L HP S +E Sbjct: 254 RVHMKHLGTPILGDPVYG----------VPSINFRYGLDKQQLHAYSLVFTHPESAERVE 303 Query: 297 WHAPIPQDMVELIEV-MRADFEEHKDEVDWL 326 +P DM LIE R DW Sbjct: 304 LVTKLPDDMTSLIEKEFREGVSIVGGSCDWF 334 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 103/308 (33%), Positives = 149/308 (48%), Gaps = 18/308 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 + ++ LG R+D L E D SRS+I I D +L N K K + + Sbjct: 3 SWIITSKTLGLRIDHFLNEHL-DLSRSKIASMIKDGTILCNDMP-TKANYKTKLNDCITA 60 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + + EP + +D+VYEDE ++++NKPR LVVHPG G T+L+ LL+Y Sbjct: 61 STYQIKTLDIEPVKMDIDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLYYLNSNC 120 Query: 128 DVP-RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-V 185 D R G+VHR+D++T+GL+V+AK L E L + + R Y A+ G + + Sbjct: 121 DHYIRPGLVHRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLPQAHVLI 180 Query: 186 DEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHIT 244 D PI + M V+ KPA TH+ +E + + + +LETGRTHQIRVH H Sbjct: 181 DAPIGPDKSNTKIMTVNQARSKPARTHFEKIETYINSSLICCKLETGRTHQIRVHALHAN 240 Query: 245 HPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQD 304 PL GDP YG K Q L A L HP M++ P+P+ Sbjct: 241 IPLHGDPQYGHPSDTDKTG-------------QYLCAARLEFVHPKYLKLMQFEIPLPRY 287 Query: 305 MVELIEVM 312 + I + Sbjct: 288 FQDKITEL 295 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 159/314 (50%), Gaps = 21/314 (6%) Query: 1 MAQRV---QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKE 57 M + +L + + G +++ L SR+ ++ ++ +L+N K Sbjct: 1 MENKCIIEKLQLIIPQTMDGWTVERVLRREV-GVSRTLLRRAKRNRVILLNQLPV-KTNV 58 Query: 58 KVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 V GE + + +E + P+ + L+I+YED ++ +NKP ++VHP GT+ N Sbjct: 59 TVKTGEVLELWM-GSQETQVVPERMELNILYEDAHLLAVNKPPGMLVHPLTNETSGTLAN 117 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +L+++ + R VHRLD++T+G++++A+ Q +L +++ + R Y A+ G Sbjct: 118 GVLYHWLQQGTIDRFRPVHRLDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKG 177 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 + G + PI+ + P GK A++HY+++ F + +R+ LETGRTHQ+ Sbjct: 178 KVQPEQGVIQAPIALEEGSFIKRMISPAGKEAISHYQVLRTFNQASLVRVELETGRTHQV 237 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVHMAH+ HPL+GD +YGG RQALH L HP+ G ++ Sbjct: 238 RVHMAHMGHPLLGDSLYGGDTSN--------------IKRQALHCAYLAFNHPVQGSRIK 283 Query: 297 WHAPIPQDMVELIE 310 + D+ +L+E Sbjct: 284 ISCSVAGDIRQLME 297 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 333 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 151/306 (49%), Gaps = 20/306 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILD-QRVLVNGKVCDKPKEKVLGGEQV 65 L +SEN + L + +SR + +++NG+ + + + + Sbjct: 5 LKYIISENTTPVTILDFLKK--EGFSRHILSSMKNTPNTIILNGER-GFGRSVLKPQDHL 61 Query: 66 AINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E + L+I+YEDEDI++INKP D+ VHP AGN + T+ N + Y+ Sbjct: 62 IVTVPETESGENIIRTKMDLNIIYEDEDILVINKPADMPVHPSAGNYENTLANGIAWYFA 121 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 + ++RLD+DTTG +++AK + L +++R+I R Y A+ G + GT Sbjct: 122 EKGEDFVYRCINRLDRDTTGALILAKNPLSAAILSVQMKKRQILRTYLALVDGLLPDSGT 181 Query: 185 VDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ PI+R V+ G+ A+THY + + ++ L LETGRTHQIRVHM +I Sbjct: 182 INAPIARMEGSVITREVNFGTGESAITHYERLAAGKEYSLAELHLETGRTHQIRVHMKYI 241 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL GD +Y R+ +RQ LH+ L HP +G M + AP+P Sbjct: 242 GHPLPGDYLY--------------NPDYRRINRQPLHSYQLEFTHPTTGKVMLFTAPLPI 287 Query: 304 DMVELI 309 D + Sbjct: 288 DFISAF 293 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 94/314 (29%), Positives = 146/314 (46%), Gaps = 21/314 (6%) Query: 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70 ++ ++ GQR+D L +S I + V VN K KP+ K+ G++V I Sbjct: 13 IAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPV 71 Query: 71 IEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 E E L I+YED+ I+++NKP VH G+G G V+ L Sbjct: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRAL 130 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G + Sbjct: 131 RPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 Query: 183 -GTVDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 TV P+ ++ + V GKP+ T +++ E + T +R TGRTHQIRVH Sbjct: 188 VKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 + HP+ D YG R + R LHA L+ HP +G M A Sbjct: 248 TQYAGHPIAFDDRYGDRE-----FDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEA 302 Query: 300 PIPQDMVELIEVMR 313 P+ + ++V+R Sbjct: 303 PMDNALKRCLQVLR 316 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 98/327 (29%), Positives = 155/327 (47%), Gaps = 26/327 (7%) Query: 1 MAQ-RVQLTAT-VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEK 58 M + R Q+ + E+ GQR+D L + +S + + V VN K K + K Sbjct: 1 MNEIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYK 59 Query: 59 VLGGEQVAINAEIEEEARFEPQDI--------PLD--IVYEDEDIIIINKPRDLVVHPGA 108 + G+ V + E EP L+ IVYED+ ++I+NKP VH G+ Sbjct: 60 LEAGDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGS 119 Query: 109 GNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 G G + AL P + +VHR+D+DT+G+++VAK A L + + + Sbjct: 120 GLHFG-AIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQ 175 Query: 169 REYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLR 227 + Y A+ +GH A V+ P+ ++ + V+P GKP+ T +RI+E F T ++ Sbjct: 176 KYYYALVMGHWDAECKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQAS 234 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 TGRTHQIRVH ++ HP+ D YG R +R LHA ++ Sbjct: 235 PVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYT-------AQFGIERLFLHAANIQFV 287 Query: 288 HPISGIEMEWHAPIPQDMVELIEVMRA 314 HP S ++E HAP+ + + + MR Sbjct: 288 HPASEKKLEIHAPLEAHLEQALTKMRQ 314 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 333 bits (854), Expect = 8e-90, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 159/311 (51%), Gaps = 20/311 (6%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR-VLVNGKVCDKPKEKVLG 61 R L + + G + + L S++ + + + VNG+ + ++ Sbjct: 2 NRFTLKWDIGPAEEGTLVREFLKT--KGISKAALTDIKFHGGAIEVNGQHAS-VRHQLRA 58 Query: 62 GEQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE++ + +EE + +DIPL I+YED+ ++IINK ++ P +P G+V NALL Sbjct: 59 GEELRVFFPVEERSEGMMAEDIPLCIIYEDDAVLIINKEANMSTIPSREHPAGSVANALL 118 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-M 179 +Y IV RLD+DT+GLM++AK L + Q++ + R YEA+ G + Sbjct: 119 SHYDKQHLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIV 178 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 G +D PI R V G+ AVTH+++++ T + L LETGRTHQIRVH Sbjct: 179 EREGMIDAPIGRKSDSIIERTVCEDGQRAVTHFKVIDSTYHKTHVALELETGRTHQIRVH 238 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 MAH+ HPL+GD +YGGR RQALH+ L YHPI EM + Sbjct: 239 MAHVGHPLLGDSLYGGRRDE--------------MKRQALHSKSLTFYHPILEKEMSFTI 284 Query: 300 PIPQDMVELIE 310 +P DM E++ Sbjct: 285 KLPSDMQEVLR 295 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 332 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 175/327 (53%), Gaps = 21/327 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A + + T E +GQRLD L+ + + SR++IK+ IL + + +P ++ G Sbjct: 8 ADSLSIPKTEMEKGVGQRLDLFLSSLL-NVSRNKIKKKILSGDLRLKNGAVLEPSHRIRG 66 Query: 62 GEQVAIN--AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 E++ I E + + ++I L+I+YEDE+I+I+NK R +VVHP G+ GT++N+L Sbjct: 67 IEEIEIRGGLTEEIPSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSL 126 Query: 120 LHYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI 176 L +Y + + R GIVHRLDKDT+G+MV+AKT + L+ +R + + Y + Sbjct: 127 LFHYGESLPGSSLLRPGIVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCK 186 Query: 177 GHMT-AGGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTH 234 + + I RH + R MAVH GK A T + ++ + L+ +GRTH Sbjct: 187 NRFPYLRYSFEANIHRHASDRKKMAVHRLKGKTAETRFTLLFASSQASFLKCEPVSGRTH 246 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH++H+ P++GDP+YG R LHA L++ HP SG + Sbjct: 247 QIRVHLSHLGFPIIGDPLYGKGVRKYPFP-------------LLLHAYALKIEHPRSGKK 293 Query: 295 MEWHAPIPQDMVELIEVMRADFEEHKD 321 +E+ AP+PQD E ++ ++ Sbjct: 294 IEFMAPLPQDFKEALDFFYGRNFSWEE 320 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 152/309 (49%), Gaps = 17/309 (5%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + G+ L + L D+S + + + VNG+ K E + G+++ Sbjct: 12 IIYEAENDDAGKELKKILKNKL-DFSSRLLARVKRGKTIFVNGEYL-KYHETINAGDEIK 69 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 I E E F QD+P + VYED D+I++NK +V HP +PD T+ N Y Sbjct: 70 IVMEDE-PNHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSK 128 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTV 185 + V+RLD DT+GL+++AK A L E +Q I ++Y A G + G + Sbjct: 129 GIDCKVRFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRI 188 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 + PI R V G+ ++T ++++E ++ T + ++L TGRTHQIRVHM H+ H Sbjct: 189 EAPIYRTTMDSIKRVVDERGQESITEFKVLERYKNATMVEVKLLTGRTHQIRVHMEHLGH 248 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +YG DRQALHA LR + P +E A +P D+ Sbjct: 249 PLIGDTLYGKEDA-------------ELIDRQALHAEYLRFWQPRFKRAIEVKADLPADL 295 Query: 306 VELIEVMRA 314 + L + ++ Sbjct: 296 LSLRDKLKE 304 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 117/318 (36%), Positives = 161/318 (50%), Gaps = 30/318 (9%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD LA+ SRS+ WI +V V G V K K+ GGE + + +A Sbjct: 33 RLDSVLAD-LTGVSRSQAAGWIAGGQVEVGGVVVQKASLKLKGGETLRVQVPPPPDATVS 91 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY--YPPIADV-----PR 131 P+ +PLD++YEDE +I +NKP +V HP G GT++NALL P R Sbjct: 92 PEAVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPGAVGPDGYR 151 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG--TVDEPI 189 GIVHRLDKDT+G++VVAKTV A RL + + R + Y A+A G A G +V+ P+ Sbjct: 152 PGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQGPVSVNAPV 211 Query: 190 SRHPTKRTHMAVHPMG-KPAVTHYRIMEHFRV-----HTRLRLRLETGRTHQIRVHMAHI 243 RHPT R M V +G + A T + + +R + TGRTHQIRVH+AH+ Sbjct: 212 GRHPTARQRMTVGGVGPREAQTLFTPLATHPDGHGRTLALVRAQPHTGRTHQIRVHLAHL 271 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GD VYG R ALHA L L HP++G + HAP+P Sbjct: 272 GSPILGDAVYGRASAV--------------MPRHALHAQFLTLPHPVTGETLHLHAPVPD 317 Query: 304 DMVELIEVMRADFEEHKD 321 D++ + + Sbjct: 318 DLLRAWVALGGAVPAELE 335 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 97/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVL-VNGKVCDKPKEKVLGGEQV 65 L T+S G + L + +SR + D+ L +NG+ + + G+ Sbjct: 5 LNYTISAADEGMIVLDFLRKQ--GFSRHILTAMKADREALSLNGQKAG-GRTVLSCGDHF 61 Query: 66 AINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + A P + + ++YEDEDI+++NKP D+ VHP GN T+ N + Y Sbjct: 62 RVRLLETVPADGILPTPLNIPVLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVAAYLE 121 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 + ++RLD+DT+G +++AK + L ++ R+I+R Y AV G GT Sbjct: 122 TKGESCPFRCINRLDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPRQSGT 181 Query: 185 VDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 + PISR + G+ A+THY+++E H+ L + LETGRTHQIRVHM +I Sbjct: 182 ISAPISRAADSVIERRIDFENGESAITHYQLLEVKNNHSLLEIHLETGRTHQIRVHMGYI 241 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL D +Y F RQ LH+ L+ HPI+G M AP+P+ Sbjct: 242 GHPLPADYLY--------------NPVYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVPE 287 Query: 304 DMVELI 309 DM Sbjct: 288 DMSNAF 293 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 98/284 (34%), Positives = 148/284 (52%), Gaps = 18/284 (6%) Query: 30 DYSRSRIKEWILDQR-VLVNGKVCDKPKEKVLGGEQVAINAEIEE-EARFEPQDIPLDIV 87 S+ + + + +NG+ K + G+ + + E+ + +PLDI+ Sbjct: 11 GISKRLLTDIKFGGGDLQINGEHVT-VKYVLKEGDLLIVKFPEEQVSETLLAEPVPLDIL 69 Query: 88 YEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMV 147 YEDE +++INK + P +P G++ N ++ +Y +V RLD+DT+G+M+ Sbjct: 70 YEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLDRDTSGIML 129 Query: 148 VAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAVHPMGK 206 VAK A + L + + + R Y AV G M GTVD PI RHP V P G+ Sbjct: 130 VAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERTVTPDGQ 189 Query: 207 PAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEA 266 AVTH+ + T + L+LETGRTHQIRVHM+++ HPL GD +YGG + Sbjct: 190 KAVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGGTRQE------- 242 Query: 267 FISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 RQALH+ L HP++ M +HAP+PQDM +LI+ Sbjct: 243 -------IGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKLIK 279 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 160/315 (50%), Gaps = 20/315 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKV 59 M ++L + G+ L L E SR + + + ++ VNGK + + + Sbjct: 1 MKS-IRLQWVIDNAATGKLLRDYLREE-KQISRKALADIKFNGGQITVNGK-EENVRYTL 57 Query: 60 LGGEQVAINAEIEEEA-RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 G+ + + E+ + +P I L I++EDE +IIINKP L P + ++ A Sbjct: 58 RLGDVIEVIFPKEKVSRSIKPYKIKLHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGA 117 Query: 119 LLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 +L YY V RLD+DT+GL++VAK V+ + EI R Y A+ G Sbjct: 118 ILAYYIENGIPSTFHAVSRLDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGI 177 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 ++ T+D PISR T V+ GK A+THY +++ + T L+L LETGRTHQIR Sbjct: 178 LSDDYNTIDLPISRKTTSIIEREVNEFGKSAITHYEVLKRYSGATLLQLTLETGRTHQIR 237 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VHM+ I HPL+GD +YGG +R DRQALH+ L +HPI+ E + Sbjct: 238 VHMSAIGHPLLGDTLYGGD--------------VRYIDRQALHSHQLSFFHPINKREYTF 283 Query: 298 HAPIPQDMVELIEVM 312 H PIP D+ + + Sbjct: 284 HCPIPDDIEDAMSKF 298 >UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8D7_COPPD Length = 315 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 156/313 (49%), Gaps = 21/313 (6%) Query: 7 LTATVSENQLGQRLDQALAEMF--PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +T V + RLD AL E+ SR+ I+ I V NG V KP +V G+ Sbjct: 9 ITGIVQQEA---RLDLALMEIIDDEGISRTWIQNNIKAGLVRCNGDVVTKPSLRVKKGDL 65 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + I + +P D+ +VY DE + +I+KP +LVVHP T+ + LL +P Sbjct: 66 LEIRL-RSRISELQPADVEYSVVYYDEHLAVIDKPPNLVVHPAPSVKGLTLCHGLLKDFP 124 Query: 125 PI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 + R GIVHRLDKDT+GLM+VA + L + + + ++R+Y G Sbjct: 125 QVKNVGSAERPGIVHRLDKDTSGLMLVALSEKGYAGLTKMISEKSVSRKYLVAVYGVANR 184 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 VD PI R P T MAV P GK A T +R ++ + L L TGRTHQIRVH++ Sbjct: 185 PFEVDAPIGRDPRNPTRMAVVPHGKNAYTRFRPVQCLEKVSLLEAELFTGRTHQIRVHLS 244 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 H ++GDPVYG + + R LH+ L L HPI+G + + +P+ Sbjct: 245 HAGFYVLGDPVYGN------------VESRLLAPRVFLHSYYLELEHPITGERLFFVSPL 292 Query: 302 PQDMVELIEVMRA 314 P+D+ E ++ Sbjct: 293 PEDLDECWHILGG 305 >UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S119_FINM2 Length = 307 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 172/317 (54%), Gaps = 18/317 (5%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + + ++ RLD LA + SRS I+++I D++VLVN K K K+ ++ Sbjct: 1 MIYEFLIDDSNQNTRLDVFLANEV-ELSRSEIQKFIEDKKVLVNYKPQKK-NYKLNSNDK 58 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + E E+ Q LD+VYED+ + IINK +D++VHP T++N L++ + Sbjct: 59 IKFDYEKED-KTIRAQKHDLDVVYEDDYLAIINKDKDVIVHPTETIYSDTLVNYLMYNFK 117 Query: 125 PIA---DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 ++ R GIVHRLDKDTTGL+++AK +L E ++ EI + Y + G + Sbjct: 118 NLSDVDGDYRRGIVHRLDKDTTGLIIIAKDNDTHLKLKEIIKNHEIIKTYLCIVHGKIDE 177 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 GT+ E ++R+P R M V GK +++ Y +++ ++ ++++++TGRTHQIRVHM Sbjct: 178 SGTIKEYMTRNPKDRKKMMVSDEGKLSISQYERLDYNDDYSLVKVQIKTGRTHQIRVHMN 237 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 +I HP++GD +YG + FD Q LHA L+ HP + ++ + Sbjct: 238 YIHHPILGDKLYGLKKE------------KILFDSQVLHAYNLQFIHPQTHEKINVIGKL 285 Query: 302 PQDMVELIEVMRADFEE 318 D + IE + D+ + Sbjct: 286 KPDFMTAIEKTKLDYTK 302 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 160/299 (53%), Gaps = 21/299 (7%) Query: 15 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 + G L Q L +S Q + V+G + ++ G+ V + EE+ Sbjct: 2 EDGIVLGQFLKA--KGFSHRLAVRIKAAQGLAVDG-IAAYAGYRLKTGQTVEVTLPEEED 58 Query: 75 A-RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAG 133 + P +PL IVYEDEDI++INK + +HP G+ D T+ NA+ Y+ + Sbjct: 59 SGNIVPVKLPLSIVYEDEDILVINKDAGVPIHPSQGHYDNTLANAVSWYFHEKGEAFTYR 118 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 +++RLD+DTTGL+V+A+ + + L E + R I REY A+ +GH GTVD PI+R Sbjct: 119 VINRLDRDTTGLLVLARHMLSACILSEQMTGRRIRREYRAIVLGHTPEEGTVDSPIARAE 178 Query: 194 TKRTHMAV-HPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 V H G+ AVTH+R + + + + + L LETGRTHQIRVHM I HPL GD Sbjct: 179 GSTIERRVDHETGERAVTHFRTLLYNEEKDLSLVSLSLETGRTHQIRVHMRSIGHPLPGD 238 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 +Y R DRQ LH+ +LR HPI+G EME+ A +P+DM +L+ Sbjct: 239 FLY--------------CPDYRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDMKQLL 283 >UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veillonellaceae RepID=D2RJC8_ACIFE Length = 294 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 158/306 (51%), Gaps = 20/306 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++L+ V + G + QA S ++ + + VNG P ++ G++ Sbjct: 1 MELSYQVDRDHAGCCVRQAARGPM-HLSEKLWRKIKWNGTITVNGSPVSSPSHRLEAGDR 59 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + EE+A P +PL ++YEDED+++++KP +++HP T++ A+ Y+ Sbjct: 60 LVFRW--EEKAAVIPVHLPLSLLYEDEDLLVVDKPAGMLIHPTWSGARDTLVQAVGGYFR 117 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGG 183 ++RLD+DTTG+++VAK+ A+ L +I REY AV G G Sbjct: 118 RTGQHCGIHPLYRLDRDTTGVLMVAKSAFAKHALTRDHS--QIYREYLAVCEGRWGIPQG 175 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 ++ PI R V P G+PAVT YRI+E + T L++ L TGRTHQIRVH AH Sbjct: 176 RIEHPIGRVAEGVDRWTVRPDGRPAVTEYRILEENQEWTVLKIHLLTGRTHQIRVHFAHE 235 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGDP+YG + + RQALHA +R HP +G E+ AP+P Sbjct: 236 GHPLVGDPLYGTKD--------------GRIARQALHAWTVRFRHPRTGEEILLTAPMPG 281 Query: 304 DMVELI 309 DM L+ Sbjct: 282 DMEGLL 287 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 148/323 (45%), Gaps = 29/323 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V++ +RLD+ L D S I + I +V VNGK P + G+ V Sbjct: 1 MRVEVTKENFYRRLDKFLRNQLKDVPLSVIYKLIRKGKVYVNGKRVKDPSFDLEEGDVVE 60 Query: 67 IN-------AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 + E+ P + LD++YE + +++NKP ++ +HPG G T++ L Sbjct: 61 FRYVNLENLPKRSEKKDLTPVPMKLDVLYEGKHYLVLNKPPNIAIHPGKGVHVATLIEGL 120 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 LHY +VHRLDKDT+GL+VVAK A L E + R I +EY + G Sbjct: 121 LHYGQEKG--FSPFLVHRLDKDTSGLLVVAKDREAARILTELFKDRNIEKEYVTLVRGTP 178 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 + P+ G+ A++ ++ R + LR+++ TGR HQIR H Sbjct: 179 ENNMKITIPL--------------DGQEAISEIVSVKSLRDVSLLRVKIHTGRKHQIRRH 224 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++ I P+VGD YG R + R LH+ ++ P + E ++ A Sbjct: 225 LSQIGFPVVGDDTYGDRHFNRE------FRKRYGLKRLFLHSYRMKFIDPWTEEEKDFRA 278 Query: 300 PIPQDMVELIEVMRADFEEHKDE 322 P+P D++ ++ + +E +E Sbjct: 279 PLPDDLLSVLNFLEERSDEWLEE 301 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 155/330 (46%), Gaps = 28/330 (8%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MA Q + V++ G RLD LA SRS + I +VLVNG + + V Sbjct: 1 MAS--QFSLIVTQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNG-LARSKRSIVA 57 Query: 61 GGEQVAIN-AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 G+ + + + IPLD+ +ED ++ I+K L VHP G+ GT++NAL Sbjct: 58 PGDTIVYEEIPLATHIPLRGEPIPLDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNAL 117 Query: 120 LHYYPPIA-----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 174 ++ Y + R GIVHRLD DT+GLM+ AK L + ++ ++ R Y + Sbjct: 118 IYAYGRDSLAHVQGDDRPGIVHRLDMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTL 177 Query: 175 AIGHMT-AGGTVDEPISRHPTKRTHMAVH--PMGKPAVTHYRIMEHFR------VHTRLR 225 G++ G +DEPI R R M + P + A+T + ++E F +T L Sbjct: 178 VHGNIAFDTGQIDEPIGRVGDDRLRMKISYRPTARNALTTFTVLERFEAGRADNGYTLLE 237 Query: 226 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLR 285 RL TGRTHQIRVHM I H VGDP+Y + RQ LH+ L Sbjct: 238 CRLYTGRTHQIRVHMEFIGHCCVGDPLY----------RWGNEQVNLELSRQFLHSYSLS 287 Query: 286 LYHPISGIEMEWHAPIPQDMVELIEVMRAD 315 HP++G ++ +P D+ + + Sbjct: 288 FNHPMTGDDIALVDGLPPDLFGALRSLEDR 317 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 97/330 (29%), Positives = 159/330 (48%), Gaps = 28/330 (8%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M++ + V+ RLD L+ +R+ I ++V +N + E+V Sbjct: 1 MSE-THIQLLVTPQHDRMRLDAFLSTCSELGARNACAHLIEQRKVEINDTLALSKSERVR 59 Query: 61 GGEQVAI--NAEIEEEARFEP-QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G+++ + + + P IPLDI YED+ +++I+K LV HP G+ D T+ N Sbjct: 60 MGDRICVAQQIDNTSSSHIMPNASIPLDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSN 119 Query: 118 ALLHYYPPIA-----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 AL+ + R GIVHRLD DTTGLMV AK Q L + ++ R R Y Sbjct: 120 ALVAHCGYEHLGLLQGDDRPGIVHRLDMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYI 179 Query: 173 AVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPM--GKPAVTHYRIMEHFR------VHTR 223 + G++ GT+ I+R R M + + A+T ++ +E F ++ Sbjct: 180 VLVQGYVTPDEGTITTGIARSKKNRLKMCISKDPASREAITTFKTLERFEAGSKDDGYSL 239 Query: 224 LRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATM 283 L L TGRTHQIRVHM ++ H +VGDP+YG + + + RQ LH+ Sbjct: 240 LECHLYTGRTHQIRVHMRYVGHSVVGDPLYGRKGD----------ALNQGLQRQFLHSWR 289 Query: 284 LRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 + HPI+ +++ +P D+ E++ ++ Sbjct: 290 MSFDHPITHEHLQFCDKLPSDLSEVLARLQ 319 >UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D n=11 Tax=Chlamydiaceae RepID=C4PNG9_CHLTZ Length = 335 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 121/332 (36%), Positives = 168/332 (50%), Gaps = 24/332 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + + E G RLD+ L YSR+ ++ I RV VNG+V + + G+ V Sbjct: 12 FSFVIDEQLTG-RLDKGLVSYNGAYSRAFYQQQIELGRVRVNGRVYTRVSHPLSLGDVVE 70 Query: 67 INAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 + EE + P+DIPLD VYED+ I++INKPRD+VVHP G+ GTV++ALLH Sbjct: 71 VELIEEEEPSSLIPEDIPLDKVYEDDMILVINKPRDMVVHPAPGHTQGTVVHALLHEIGE 130 Query: 126 I------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM 179 + R GIVHRLDKDT+GL++ KT A+ E +++ + Y A+ I Sbjct: 131 RLKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKALYSELFATKQVKKLYVAICINAP 190 Query: 180 TAGGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQ 235 + + I+RHP KR M V GK A+TH ++ + + L ETGRTHQ Sbjct: 191 SQE-LIHTRIARHPLKRKEMTVLSTHAEGGKEAITHCHVLATNGRLSVVALYPETGRTHQ 249 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 +RVHM H+ P++GDPVYG I+ D+Q LHA L HP S + Sbjct: 250 LRVHMKHLGTPILGDPVYG----------IPSINFRYGLDKQQLHAYSLVFAHPESAERV 299 Query: 296 EWHAPIPQDMVELIEV-MRADFEEHKDEVDWL 326 + +P DM LIE R DW Sbjct: 300 KLVTKLPDDMTSLIEKEFREGVSILDGSCDWF 331 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 326 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 154/303 (50%), Gaps = 19/303 (6%) Query: 13 ENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV-LGGEQVAINAEI 71 + + L E + R ++ + VL++G+ + V G+++ + Sbjct: 17 DKDDAIPIGNLLREEWK-LPRKQVHLLFQHKEVLLDGEPVAQ--HVVGKAGQEIRLRMCK 73 Query: 72 EEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR 131 E +P +I+YED+ ++I+NKP L++HP T+ + + ++ + Sbjct: 74 PEALGLDPASEAPEILYEDDHLLIVNKPVGLLLHPTERYHHVTLDHLVSGHFFRTGLEAK 133 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDEPIS 190 VHRLD+DT+G+++ AK A L E L+ R I R Y A G M G ++EPI Sbjct: 134 VRHVHRLDQDTSGVVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEPIG 193 Query: 191 RHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGD 250 + T V P G PA+THY++ E F+ T++ +LETGRTHQIRVH +HI HPL+GD Sbjct: 194 KDRNHGTRRRVTPNGDPAITHYQVKERFQTATKVECQLETGRTHQIRVHFSHIGHPLLGD 253 Query: 251 PVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIE 310 +YGG+ RQALHA +L+ HP G +E AP+P D+ L + Sbjct: 254 ELYGGKR--------------ELIKRQALHAAVLKFEHPFGGEVIEVTAPLPLDLFHLEK 299 Query: 311 VMR 313 +R Sbjct: 300 KLR 302 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 326 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 95/310 (30%), Positives = 157/310 (50%), Gaps = 19/310 (6%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGE-Q 64 Q+ V +Q G+ L L D S +K+ + +L NG + V G+ Sbjct: 7 QVVLCVEASQNGKFLRDFLKH--KDISDRALKKLRNEGEILCNGAKVT-WRTIVNTGDKV 63 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V I P+ + L I+ EDEDI ++NK + VHP P GT+ N L++++ Sbjct: 64 VLIYPIPPRNQYLPPEPLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLVYHWL 123 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MTAGG 183 P V+R+D++T+GL++VAK + +L +R+++ R Y A+ G + G Sbjct: 124 ENNPAPTFHAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQRNG 183 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D P+ + K T + G+ A+T + ++++ T +RL ETGRTHQIRVH++H+ Sbjct: 184 YIDLPLEKCEGKTTKRQISSTGQQALTRFEVLQYITDCTLIRLMPETGRTHQIRVHLSHL 243 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPLVGD +YGG ++ + R LHA + HP +G M + P+ + Sbjct: 244 GHPLVGDTLYGG--------------SIAQIGRHCLHADKISFLHPRTGHPMSFQIPLAE 289 Query: 304 DMVELIEVMR 313 DM+++I M Sbjct: 290 DMLQVITEMG 299 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 100/319 (31%), Positives = 161/319 (50%), Gaps = 22/319 (6%) Query: 1 MAQRVQLTA---TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKE 57 M + + TV G ++ L + + + + + +++ V VNG+ + E Sbjct: 1 METKKKGEWCEMTVPAKWNGISIESLLKIEW-EIPKKLLHQLRMEKGVTVNGE-QRRWNE 58 Query: 58 KVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 + G+++ ++ +EEE EP+ L +VYED+ ++I+NKP + HP GT+ N Sbjct: 59 LLKEGDKLQVHMFMEEEYDVEPEYGELHVVYEDDHVLIVNKPEKMDTHPSEKGGMGTLAN 118 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + ++ + +HRLDKDTTG +V AK A + L R+I R Y A+ G Sbjct: 119 LVAFHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEG 178 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTH 234 + GT+D I R T V P G A+T+Y++ E+F+ T + L+LETGRTH Sbjct: 179 KVKKKQGTIDAAIGRDRHHATRRRVSPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTH 238 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVHM++ +PLVGD +YGG + RQALHA + HPI+ E Sbjct: 239 QIRVHMSYNGNPLVGDVLYGGGTKY--------------MSRQALHAMKINFLHPITKEE 284 Query: 295 MEWHAPIPQDMVELIEVMR 313 +E P P + + ++ + Sbjct: 285 IEVDVPFPTKLNDTMKAFQ 303 >UniRef50_C9KIU1 Pseudouridine synthase n=3 Tax=Veillonellaceae RepID=C9KIU1_9FIRM Length = 296 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 159/311 (51%), Gaps = 19/311 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 Q+ + E + L + S ++ K V G +C+ + +V G+ Sbjct: 2 TQIRVELPEALTSMPVKAFLTQH-EGISSTQWKRIKHSGTFRVGGILCNAARTEVRTGDI 60 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + + EP+D+PLDI YED+ ++I+NKP +VHP GT+ NA+L++Y Sbjct: 61 ITFDIVRP--SDIEPEDLPLDIRYEDDYLLIVNKPAGQLVHPTTKEAHGTLGNAVLYWYK 118 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV-ESLQRREITREYEAVAIGHM-TAG 182 + VHRLD++T+GL+++AK Q +L + + REY A+ G + Sbjct: 119 AHGEHHAYHPVHRLDRNTSGLVLIAKVPQVQYKLTPRHGEGKLFHREYLALIEGELTPPE 178 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G +D PI+R V P G+ A THY ++ + + L L+TGRTHQIRVH+AH Sbjct: 179 GLIDAPIARALPSIILRKVSPDGQTARTHYDTVQTDGKLSLIHLVLDTGRTHQIRVHLAH 238 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 + HPL+GD +YGG L + RQALHA L HP++G E++ P+P Sbjct: 239 LGHPLLGDDLYGGN--------------LARIKRQALHAARLHFRHPMTGAEIDVQVPLP 284 Query: 303 QDMVELIEVMR 313 DM +++ + Sbjct: 285 SDMAQIVSDFQ 295 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 162/314 (51%), Gaps = 19/314 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + L +SEN+ + L L S I++ L Q++ VN ++ V ++ Sbjct: 1 MILERIISENEARKTLKHVLKNGLK-LSERLIRKLKLQQKIYVNEHP-ERVNYIVKADDR 58 Query: 65 VAINAEIEEE-ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + ++EEE EPQDIPLD++YEDE ++++NK +VVHP + +PD T+ N +++Y Sbjct: 59 LKVILDLEEECEHIEPQDIPLDVIYEDECMLVLNKQSGIVVHPTSYHPDNTIANGIVYYL 118 Query: 124 PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AG 182 + V RLD++T+G+++ AK Q L++ + +EY + G Sbjct: 119 KQKGVTKKVRPVSRLDRETSGIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGIPQNNE 178 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVH--TRLRLRLETGRTHQIRVHM 240 GT++ PI+R P + G P++THY+I++ F H L +LETGRTHQIRVH Sbjct: 179 GTINLPIARKPGSIMLRHISEEGAPSITHYKILKTFPSHNSALLSFKLETGRTHQIRVHC 238 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + P+ GD +Y +T RQALH+ + HP++ + + A Sbjct: 239 KAMGFPIYGDTLY-------------SDNTNLFISRQALHSYRTEIIHPVTLKGVIFKAE 285 Query: 301 IPQDMVELIEVMRA 314 +P D+ L+E++ Sbjct: 286 LPSDISGLLEILSK 299 >UniRef50_Q04XF3 Pseudouridylate synthase, 23S RNA-specific n=4 Tax=Leptospira RepID=Q04XF3_LEPBL Length = 312 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 163/316 (51%), Gaps = 23/316 (7%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVL-VNGKVCDKPKEKVLG 61 ++L A V E G RLD+ L F D SR+ I++WI V + K+CDK KV Sbjct: 2 NLELKAEVLEEFSGNRLDRFLKFSFGDEMSRATIQKWIECGYVRNQDRKICDKSSWKVKT 61 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 GEQ ++ EP + L +V E ED +II+KP + H G G+ +++N LLH Sbjct: 62 GEQYFLSIPPRPPLSLEPIPMTLPVVLEREDYLIIHKPPGIASHSGPGDRSPSLVNGLLH 121 Query: 122 YYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 ++ + R GIVHRLDK T GLM++AK A +L E ++REI ++Y A GH Sbjct: 122 HFKELSKVGGEARPGIVHRLDKPTEGLMLIAKNDRAHGKLSELFRKREIEKKYYAWIQGH 181 Query: 179 MTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEH-----FRVHTRLRLRLETGR 232 + A GT+D PI+RHP +R M V P G+ +VTHY+++++ R + + + LETGR Sbjct: 182 LPAETGTIDLPIARHPIERLKMTVSPKGRKSVTHYKVLKYVNSRSGRKFSFVEVGLETGR 241 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIR+H P+VGD +Y + L + L+ P +G Sbjct: 242 THQIRIHFQSQRCPVVGDLLYSRTGSQFESYG------------LQLLSYYLKFKDPFTG 289 Query: 293 IEMEWHAPIPQDMVEL 308 +E + + + Sbjct: 290 EMIEATLALSERFLRF 305 >UniRef50_B6BNM7 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BNM7_9PROT Length = 325 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 22/319 (6%) Query: 15 QLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE 74 +RLD LA +RS+I I + V V+ K+ +P K+ G+ + + +E Sbjct: 10 DNPERLDIFLASEI-GQTRSQIASLIKHKCVFVDEKLVTRPGVKLKSGQNIKVEFPEAKE 68 Query: 75 ARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH---YYPPIADVPR 131 + D ++I+YED+D+++INKP + VHP + T+++ L H I+ R Sbjct: 69 SPALDIDFNVEILYEDDDVLVINKPSGVTVHPAPSVKEATLVDWLKHKGIRLSNISGEER 128 Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGG-TVDEPIS 190 GIVHRLDK T+G MVVAK A L E LQ + + R Y AV + T+++ I Sbjct: 129 HGIVHRLDKGTSGTMVVAKNNEAHEFLSEQLQDKSMGRYYLAVLNPPLKDEITTIEQNIG 188 Query: 191 RHPTKRTHMAVHPMG--KPAVTHYRI--MEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 R R M G K A T +++ + + + +L TGRTHQIRVH+ I Sbjct: 189 RSAHNRLKMTCTDAGKSKYAKTMFKVLSLSNDEKQQFVACKLFTGRTHQIRVHLESINRH 248 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 ++GD +Y A K +R LHA M+ HP S ++ + AP+ + M Sbjct: 249 IIGDHIY------------ALSPKAEKSERILLHAYMIYFVHPTSKEKLTFVAPLDETMK 296 Query: 307 ELIEVMRADFEEHKDEVDW 325 + ++ + D E+ + +D Sbjct: 297 DYLDK-KFDTEQINEVMDT 314 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 163/308 (52%), Gaps = 32/308 (10%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 V G+RLD+ L + P++SR+ ++ + V +V + +KV+ G+Q+ + Sbjct: 44 VVEAAAHGERLDKWLVRIAPEFSRAHLQGLVEGGHVRCGEQVLRQSHKKVMAGQQIEVAL 103 Query: 70 -EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128 + F + + L +V+ED +++I+KP LVVHP AG+ GT+LN LL ++ A Sbjct: 104 WPTAQSTAFRAEAMTLAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAAAAH 163 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-HMTAGGTVDE 187 +PRAGIVHRLDKDT+GLM+VAK++ A T LV ++ R++ REY A+ G M +D Sbjct: 164 LPRAGIVHRLDKDTSGLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMDGLQVIDA 223 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR-----------------VHTRLRLRLET 230 P+ R P R MA+ GKPA T R + + + +L T Sbjct: 224 PLGRDPVSRVRMAIVASGKPARTDVRRLAVAELPGDGVRQLPGATRAPRQVSAVHCQLHT 283 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVH+A HPL+ D +YGG P RQALHA L L HPI Sbjct: 284 GRTHQIRVHLASRGHPLLADAMYGGAPA-------------FGLQRQALHAARLHLLHPI 330 Query: 291 SGIEMEWH 298 G + + Sbjct: 331 DGRPLAFE 338 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 96/322 (29%), Positives = 156/322 (48%), Gaps = 17/322 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M + V + G R+D+ L+ F +YS R++ + VNG P ++V Sbjct: 1 MKTAFETDLIVEDYLDGARIDRFLSRHFRNYSTHRLQRIVQAGFAKVNGIPA-DPLQRVF 59 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+Q+ I + ++P+ +PL+++YED +II+NKP ++ HP GTV NAL Sbjct: 60 RGQQINIRLPEPPDKTYDPEPLPLEVLYEDAWLIIVNKPPGMIAHPAGNILSGTVANALQ 119 Query: 121 HYYPPIAD---VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 +Y + R GIVHRLD+ T+G+++VAK L Q+ +++ Y A+ Sbjct: 120 YYLDQQTGVRSLLRPGIVHRLDQFTSGILIVAKEHLGHRSLSIQFQQNRVSKSYLAIVRD 179 Query: 178 HMTAG-GTVDEPISRHPTK-RTHMAVHPM---GKPAVTHYRIMEHFRVHTRLRLRLETGR 232 ++ I HPT+ M HP K A T + ++E H+ +R +TGR Sbjct: 180 QPKQDLFENNDAIGEHPTQAGVCMTTHPEALRAKAAFTRFEVVERLPGHSLIRAFPKTGR 239 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 HQIRVH+A + P++ D YG R + RQALHA + HP++ Sbjct: 240 LHQIRVHLADLGFPIIADDFYGNDAR--------LLDDRELISRQALHAEQIEFSHPVTS 291 Query: 293 IEMEWHAPIPQDMVELIEVMRA 314 + M A +P D ++ +R+ Sbjct: 292 LRMNISAGVPADFQLALQRIRS 313 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 17/304 (5%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 +S+ G ++ L + YS +I++ + +L+NGK K K+ + ++I Sbjct: 28 RHKISQEHEGFTVENYLKNIL-QYSGRKIQKLTRRKGILLNGKTVYLQK-KLNAEDTLSI 85 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 + +P+ ++++YED+ ++++NKP +VHP GT+ N L +Y Sbjct: 86 LDLEDTNYGVQPEKGAIEVLYEDDFLLVLNKPAHQLVHPTGQTTRGTMANYLAYYLKQRN 145 Query: 128 DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVD 186 V VHRLD++T+G ++ AK +Q L + L+ R + R Y A+ G + GT+D Sbjct: 146 VVSAIRPVHRLDRETSGCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPPSGTID 205 Query: 187 EPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHP 246 PI HP+ A++ G+ ++THY+ + F + L+L L+TGRTHQIR+H+AH+ +P Sbjct: 206 APIGPHPSLANRRAINEHGEQSITHYQTLRSFPEISLLKLNLDTGRTHQIRLHLAHLGYP 265 Query: 247 LVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMV 306 ++GD +YG R +RQALHA + H E+ HAP+P D Sbjct: 266 IIGDRMYGVRSPW--------------INRQALHAYDVSFRHLKENHEIAVHAPLPTDFA 311 Query: 307 ELIE 310 + I Sbjct: 312 QAIN 315 >UniRef50_Q3AD19 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD19_CARHZ Length = 301 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 155/316 (49%), Gaps = 19/316 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++++ V++ +G+ + Q L S+ ++++ L V N + GE Sbjct: 1 MEISLPVNQEYIGKTVFQFLKSH--GLSKRQLRKLKLQNAVFFNNRPVPLNSHLTTPGEV 58 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 V I + Q+ P+ ++YED+ +I+I+KP ++ HP + ++ L YY Sbjct: 59 V-IKLPHTLPPAVQSQNAPVKVLYEDDYLIVIDKPAGVLAHPVKNHFAPSMQELTLSYYR 117 Query: 125 PIADVPR-AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAG 182 + ++RLD++T+G M++AK L SL++R+I + Y A+ G + Sbjct: 118 DKGRIFEGFYPIYRLDRNTSGPMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGPLADKS 177 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242 G ++ P+ AV P G+PA T Y+ ++ F HT L++ L TGRTHQIR H A Sbjct: 178 GIINLPLGLLEGSIIKRAVVPGGQPACTKYQTVKAFPTHTLLKVELLTGRTHQIRAHFAA 237 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HPL GD +YGG+ + +RQALH + HPI+ + +AP+P Sbjct: 238 IGHPLAGDDLYGGK--------------MDLIERQALHLYYISFPHPITKKTISLYAPLP 283 Query: 303 QDMVELIEVMRADFEE 318 +D E + ++ E Sbjct: 284 RDFKEALITLKKASGE 299 >UniRef50_Q6KHW4 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q6KHW4_MYCMO Length = 298 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 25/309 (8%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 +++ ++ R+D+ LA DYSR+ I++ I + +V VN + K K+ +Q Sbjct: 1 MEIKKIIATEIN--RIDKFLANS-TDYSRNDIQQLIDEHQVYVNDILVRKASFKIKENDQ 57 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + I ++ +E Q+I LDIV+E+ED +IINK +VVHP GN T++NALL ++ Sbjct: 58 IEIKKQLIKETNAIAQNINLDIVFENEDFLIINKRSGMVVHPAPGNMQDTLVNALLFHFK 117 Query: 125 ----PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 I R GIVHR+DKDT+GL++VAKT A L++ +I R+Y+A+ +G M Sbjct: 118 NNLSNINGEIRPGIVHRIDKDTSGLLLVAKTNEAHNYFALLLKKHQIERKYQAIIVGKMD 177 Query: 181 AGGT-VDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 T ++ PI R+ + R M V K A T ++ H+ ++ L+TGRTHQIRV Sbjct: 178 HTITNINLPIGRNTSSRLKMEVTAHNSKEAFTKITSLKASETHSLIQCELKTGRTHQIRV 237 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H+AHI P+ GD +YG + Q LHA L + + ++ Sbjct: 238 HLAHINKPIYGDNIYGKKVDDFN---------------QRLHAYELSFTY-KDNKQYSFN 281 Query: 299 APIPQDMVE 307 P+P++M E Sbjct: 282 VPLPKEMQE 290 >UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB6_WEIPA Length = 305 Score = 322 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 145/302 (48%), Gaps = 20/302 (6%) Query: 12 SENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKVLGGEQVAINAE 70 +++ R+ LA+ S +VL+N + + V G+ V + Sbjct: 8 NQSDSTLRIKTFLAQR--GVSHRMFAIIKRGGGQVLLNHRPVRTLDD-VEPGDLVEVKMP 64 Query: 71 IEEEARFEP-QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY-PPIAD 128 E+ D+P+ I+YEDE+ ++++K + PG + + T++N + Y A+ Sbjct: 65 AEKSNAIVAASDLPIKILYEDENWLVVDKVAGVTSVPGKADRETTMVNRVKGYLISEGAE 124 Query: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG-GTVDE 187 +V RLD+ T+G+ ++AK A L + LQ + + Y A+ G + G +D Sbjct: 125 DLVPHVVTRLDRFTSGVALLAKHRFAHGLLDKQLQTHTVDKRYYAIVDGIVPDDHGFIDA 184 Query: 188 PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 PI R V G+P+ T Y ++ T ++++L TGRTHQIRVH +I HPL Sbjct: 185 PIGRMDNDFIRREVRADGRPSQTEYWVVNRMPNQTLVKVQLHTGRTHQIRVHFKYIGHPL 244 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 +GD +YGG R +RQALHA L Y P S I+ +P+P+D+ + Sbjct: 245 IGDEIYGG-------------PMDRGIERQALHAYWLEFYDPFSEIKRHIQSPLPEDLKQ 291 Query: 308 LI 309 ++ Sbjct: 292 IL 293 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 156/321 (48%), Gaps = 23/321 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 T V E G RLD+ L FP S I+ + +V VN + ++ G+ V Sbjct: 11 RTVQVDEEYAGSRLDKFLKSQFPSVPFSLIQRLMRTGQVRVNKGRA-RGDRRLAFGDWVR 69 Query: 67 INA-----------EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTV 115 + +E+ + D+ ++ D I+++NKP + VH G+G+ G V Sbjct: 70 LPPVTPPTAEELEHPNKEKILHQSADVEARTLHRDGWILVLNKPAGIPVHGGSGHQWG-V 128 Query: 116 LNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA 175 ++A+ + +A + HRLDK+T+GL++ A L E+++ ++T+ Y + Sbjct: 129 VDAVRASLEKLGIEAQAELCHRLDKETSGLLLFGLRPRAVRLLTEAMRENQVTKTYLTLV 188 Query: 176 IGHMTA-GGTVDEPISR-HPTKRTHMAVHP-MGKPAVTHYRIMEHFRVHTRLRLRLETGR 232 G A G +++P+S+ + M V G+ AVTHYR++ + V + L ++LETGR Sbjct: 189 QGVPAARQGVINQPLSKGNVRGGERMVVVEQGGQRAVTHYRVLRSYGVASLLEVQLETGR 248 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIRVHM + HP+ GD YG + R LHA+ L HP + Sbjct: 249 THQIRVHMQWLGHPVAGDGKYGDKAFNKWMRER-------GLKRLFLHASELAFRHPENE 301 Query: 293 IEMEWHAPIPQDMVELIEVMR 313 ++ + AP+ ++ ++E ++ Sbjct: 302 QKLAYQAPLDDELTRVLEGLK 322 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 155/301 (51%), Gaps = 10/301 (3%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 R+D L + +R+ I++ I V VN + K V + + I E + Sbjct: 38 RIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKK-NYIVKINDVIEIFLP-EGKKNII 95 Query: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR--AGIVH 136 P+++ ++I YEDE +IIINK LVVHPG GN T++N L Y+ ++ +VH Sbjct: 96 PENLKINIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYNKIPILVH 155 Query: 137 RLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTK 195 R+DK T+GL++VAK ++ + I R+Y + G++ GT+ I R Sbjct: 156 RIDKGTSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWGYIKNNKGTIICNIGRSLKN 215 Query: 196 RTHMAVHPMG---KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPV 252 R +M V P G K ++THY+++E F+ T L+ LETGRTHQIRVH+ +I HP++ D Sbjct: 216 RIYMNVFPNGIYGKFSITHYKVLERFKYVTLLKCTLETGRTHQIRVHLKYIGHPILNDKD 275 Query: 253 YGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 YGG + + QALHA + HPI + + PIP + LI+ + Sbjct: 276 YGGNHTFKE--KKNIKKLFINMKYQALHAYYIEYIHPIYRKKNYFICPIPDRIKFLIKNL 333 Query: 313 R 313 R Sbjct: 334 R 334 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 90/318 (28%), Positives = 147/318 (46%), Gaps = 23/318 (7%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T+SE++ GQR+D L +S I + V VN KP+ K+ G+ V I Sbjct: 16 LTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRI-KPEYKLQTGDVVRIP 74 Query: 69 AEIEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 E P L+ I++ED+ +II+NKP + VH G+G G V+ AL Sbjct: 75 PVRVAEKNDAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLNFG-VIEALR 133 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 P + +VHRLD+DT+G++++AK A L E L+ + + ++Y A+ G Sbjct: 134 ALRPEARFLE---LVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQWQ 190 Query: 181 AG-GTVDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + + + ++ V GKP+ T + I E + T ++ TGRTHQIR Sbjct: 191 SHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRTHQIR 250 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH + HP+ D YG + + +R LHA +R HP +G + + Sbjct: 251 VHTQYAGHPIALDDKYGDKDFDKQMNE-------LGLNRLFLHAFSIRFEHPKNGETLRF 303 Query: 298 HAPIPQDMVELIEVMRAD 315 +A + M +++ +R Sbjct: 304 NASLDHQMKAILQKLRES 321 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 144/313 (46%), Gaps = 20/313 (6%) Query: 4 RVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKVLGG 62 V L + +N+ G + L + +SR + + VNG K+ Sbjct: 23 NVILRWEIKKNEQGMLIKTYL-QQIHHFSRRLLISLKKVPSSIQVNGTS-QWVTYKLKRE 80 Query: 63 EQVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + + + E+ + P+ +PLDI+YED +++NKP P + T+ N L + Sbjct: 81 DILTVALPDEKPSDAITPEKLPLDIIYEDAYCLVVNKPAGQACLPSMNHRHNTLANGLTY 140 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-T 180 YY + IV RLD +T+GL++VAK + Q I R YEA+ G + Sbjct: 141 YYQKNSIPSTVHIVTRLDVNTSGLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHGEVSP 200 Query: 181 AGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 G VD PI+R V GK A T+YR++ + + + ++LETGRTHQIRVH Sbjct: 201 TSGIVDAPIARKEGSIIERTVDMRNGKYAKTNYRVLYADSIASWVEIKLETGRTHQIRVH 260 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 ++ H L GD +YGG RQALH + + HPI ++ A Sbjct: 261 FQYLGHSLYGDNLYGGSKDIML--------------RQALHCKQITMMHPIKNQPIQLEA 306 Query: 300 PIPQDMVELIEVM 312 +P+DM L++ + Sbjct: 307 SLPEDMGILLKRL 319 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 26/317 (8%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M ++ + +++E +RLD+ L S I + + V VNGK KP ++ Sbjct: 1 MENKI-VELSINEENSYRRLDKFLRNELKAVPLSEIYKLLRTGCVQVNGKTVRKPYTELY 59 Query: 61 GGEQVAINAEIE---EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G++V I A++ ++ + LDI+YED++++I+NK + +HP T++ Sbjct: 60 VGDKVTIKADLAVYRQKKDLPSIPLKLDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQ 119 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 L ++ + +VHRLD+DT+G++V+AK V L + R + +EY + G Sbjct: 120 GL--HFYGAKKGFKPHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSG 177 Query: 178 HMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + G +D+P+ G A+T Y+++E+FR + LR+ L TGRTHQIR Sbjct: 178 KIFGDGFIDKPL--------------DGSEALTEYKVLENFRDTSLLRVILHTGRTHQIR 223 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 H A I +P+VGD +YG + RQ LH + +P + Sbjct: 224 KHFALIGNPVVGDILYGDKKVN------ELFKKKHNLRRQFLHCIRISFTNPSEPGVISI 277 Query: 298 HAPIPQDMVELIEVMRA 314 AP+P D+ +I+ ++ Sbjct: 278 KAPLPDDLERVIKGLKK 294 >UniRef50_Q30SG9 Pseudouridine synthase n=5 Tax=Epsilonproteobacteria RepID=Q30SG9_SULDN Length = 323 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 20/313 (6%) Query: 18 QRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARF 77 +RLD L + SRS+I + I + V V+GKV + K+ + V + E Sbjct: 13 ERLDTFLTSIL-GQSRSQIAQLIKKELVQVDGKVVSRSGVKLKKNQVVLVKFPPAEIKPA 71 Query: 78 EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH---YYPPIADVPRAGI 134 D ++I+YED+DI++INKP L VHP + T+++ L H ++ R GI Sbjct: 72 LDIDFDVEILYEDDDILVINKPTGLTVHPAPSVKEATLVDWLKHKGMRLSSLSGEERHGI 131 Query: 135 VHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT-VDEPISRHP 193 VHRLDK T+G MV+AK L + LQ + + R Y AV + T V PI+R Sbjct: 132 VHRLDKGTSGAMVIAKNNSTHEFLSDQLQDKSMGRYYLAVINPPLKDELTEVIFPIARSS 191 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHT--RLRLRLETGRTHQIRVHMAHITHPLVGDP 251 R MA GK A + ++++ + + +L TGRTHQIRVH+ + +VGD Sbjct: 192 HNRLKMAPLEHGKYAKSAFKVLAYSNDEANQLIACKLYTGRTHQIRVHLESLNRHIVGDH 251 Query: 252 VYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEV 311 +Y P+ K +R LHA ++ HP S + + A + + M E I+ Sbjct: 252 IYAQSPKQEKS------------ERILLHAYIIYFIHPKSKERVSFVASLDKGMQEYIDK 299 Query: 312 MRADFEEHKDEVD 324 + D E+ + +D Sbjct: 300 -KFDMEKIDEIMD 311 >UniRef50_C9KQC1 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQC1_9FIRM Length = 302 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 168/320 (52%), Gaps = 20/320 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++++ TV G+ L Q + S K + VLVNGK + +V G++ Sbjct: 1 MKISYTVDAAHDGRELRQLVRAPL-GLSAKLWKHIKWNGTVLVNGKKNGDARLRVHTGDE 59 Query: 65 VAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + + +E + P D+PLDI+YEDE +++NKP D++VHP T+++A+ Y+ Sbjct: 60 LTLLW--QEVSSVVPVDLPLDILYEDETFLVVNKPADMIVHPTHRAARDTLVHAVAGYFE 117 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGG 183 + ++RLD+DTTG++++AK+ Q + + +I REY A+A GH+ G Sbjct: 118 RRGEAAGIHPLYRLDRDTTGIVILAKSARIQHAMTK--HHGQIYREYLALAQGHLDCLSG 175 Query: 184 TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHI 243 +D PI R T+ H V G+ A+T Y + + ++ L++ L TGRTHQIRVH A + Sbjct: 176 RIDMPIGRDITRANHWQVRADGRRALTEYETIASWPAYSLLKIHLLTGRTHQIRVHFAAL 235 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 HPL+GD Y G + RQALHA + +HP +G E+ APIP+ Sbjct: 236 GHPLLGDTAYDG--------------SCDTIPRQALHAWRVHFFHPDTGKEIRIEAPIPE 281 Query: 304 DMVELIEVMRADFEEHKDEV 323 DM LI E K+E+ Sbjct: 282 DMCRLIGSDTVSRETFKEEI 301 >UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium thermophilum RepID=Q67N67_SYMTH Length = 327 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 160/334 (47%), Gaps = 46/334 (13%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V + G RL Q L + SR+ ++ +LV+G+ + + GGE V Sbjct: 1 MRFVVDPSARGLRLSQYLFDRLK-LSRTVVRRAKTSGGILVDGRPA-RTSLVLAGGEVVE 58 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + +E R EP+ IP+ +VYED +++++KP +VVHP GT+ NA+ H+ Sbjct: 59 VRV--AQEGRVEPEPIPIQVVYEDPWLLVVDKPAGMVVHPVRDYVSGTLANAVAHHLLRS 116 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREY-EAVAIGHMTAGGTV 185 P A V R+D++T+GL++ AK L L+R+++ R Y V GTV Sbjct: 117 GSDPVARPVQRIDRETSGLVLFAKDPAVAGLLARELERQKLERRYVAVVEGAVAADAGTV 176 Query: 186 DEPISRHPTKRTHMAVHPM---------------------------GKPAVTHYRIMEHF 218 D PI R V G+PAVTH+R++ + Sbjct: 177 DRPIRRVWGHPVAREVAEGPRTPEQERLLAEAAAQGRALREDWTAAGQPAVTHWRVLRRW 236 Query: 219 RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQA 278 T L LRLETGRTHQIRVHMA++ HPL+GD +YGG RQA Sbjct: 237 PAATMLELRLETGRTHQIRVHMAYLGHPLLGDELYGGSRT--------------LIQRQA 282 Query: 279 LHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 312 LHA L HP++ + + AP+P D+ +L+ + Sbjct: 283 LHAATLAFVHPVTREPVRFTAPLPADLEDLVARL 316 >UniRef50_A6GN92 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GN92_9BURK Length = 388 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 139/345 (40%), Positives = 186/345 (53%), Gaps = 29/345 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 L A+V G RLD+ +AE+FP YSRSR++ W+ ++RVLVNG K +KV G +++ Sbjct: 18 LQASVPMELGGSRLDKVIAELFPQYSRSRLQGWLKEERVLVNGVAAAKGNQKVQGMDRIE 77 Query: 67 INA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 ++ + P+D+ LDIV + ++NK LVVHP G+ GT++N L H P Sbjct: 78 LSPGVLAHMQALIPEDMNLDIVARTNEYTVVNKQAGLVVHPAPGHWTGTLMNGLYHLDPE 137 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185 + VPRAGIVHRLD DTTGLMVVA+T Q +LV+ LQ R + R Y A+ G +++ TV Sbjct: 138 LIHVPRAGIVHRLDADTTGLMVVARTQETQVKLVQMLQARIVKRVYLAMVWGRISSPLTV 197 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR----VHTRLRLRLETGRTHQIRVHMA 241 + P+ R P R MAV GKPAVTH+ + T + RLETGRTHQIRVH Sbjct: 198 NNPLGRDPRNRLRMAVVDHGKPAVTHFTPVAFGELLEVPVTLMVCRLETGRTHQIRVHAQ 257 Query: 242 HITHPLVGDPVY---GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI-------- 290 H LV DPVY G S + KF+RQALHAT L P Sbjct: 258 HAGFALVADPVYKIKGAGSHSALRLSSIELPNGEKFERQALHATHLSFPDPAHFHVQGSD 317 Query: 291 -----------SGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVD 324 + E+ A P+D+ L E+ DF H D+V+ Sbjct: 318 EAAEDWDESLGNHEWPEYVAKAPEDLRLLGEMAGIDF--HSDDVE 360 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 319 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 91/313 (29%), Positives = 147/313 (46%), Gaps = 22/313 (7%) Query: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 TVS + GQR+D L +S + + V N K KP K+ G+ + I Sbjct: 12 TVSAEESGQRIDNFLIAQLRGVPKSLVYRIVRKGEVRANKKRI-KPDYKLKEGDLIRIPP 70 Query: 70 EIEEEARFEPQD-------IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 E P + I+YED+ +++INKP + VH G+G G ++ L Sbjct: 71 VKVNERPDLPSANLEQVAALEHAILYEDDALMLINKPSGVAVHGGSGLQFG-LIEGLRAL 129 Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 P + +VHR+D+DT+GL++VAK L E L+ +E+ ++Y A+ G Sbjct: 130 RPKEKSLE---LVHRIDRDTSGLLLVAKKRSVLRSLHEQLRNKEMNKQYLALVRGQWQKR 186 Query: 183 GT-VDEPISRHPTKRTHM--AVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 V+ P+ ++ K V GK ++T +RI + ++ T + TGRTHQIRVH Sbjct: 187 VRSVEAPLKKNTLKSGERIVRVDAEGKASLTRFRIQQRYKEGTLVEASPVTGRTHQIRVH 246 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 H HP+ DP YG + +R LHA LR HP++G E+ + A Sbjct: 247 ALHAGHPIAKDPKYGDTDFDNTM-------SRLGLNRLFLHAWQLRFLHPVTGKEVAFEA 299 Query: 300 PIPQDMVELIEVM 312 P+ ++ + ++ + Sbjct: 300 PLDDNLQQTLKQL 312 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 319 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 156/326 (47%), Gaps = 40/326 (12%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + LT + RLD L+E PDYSR I+ I +V VNGK KP + Sbjct: 1 MSNKETLTF----SGTSARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGK-ERKPAWPLA 55 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDG------- 113 G+ V I E L I++ED+++ +INKP ++VHP + + Sbjct: 56 EGDNVEIEWPSVENKTGL---KDL-IIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFI 111 Query: 114 ---TVLNALLHYYPP--IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 T+++ +L P + RAG+VHRLDKDT+G+M++AK Q +VE RE+ Sbjct: 112 GEETLVSLILANPPKNFEKGITRAGLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMH 171 Query: 169 REYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLR 227 + YEA+ G + G ++ PI R + +G+ AVT Y +++ + ++L Sbjct: 172 KTYEAIVCGVVPDDKGIINVPIGRVTGGKIK--ASELGREAVTEYSVLQRKETVSLMKLH 229 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 TGRT+Q+RVHM+ + +P++GD +Y G R LH+ Sbjct: 230 PVTGRTNQLRVHMSWLGYPVLGDWLYKGAT----------------APRLMLHSKSAEFE 273 Query: 288 HPISGIEMEWHAPIPQDMVELIEVMR 313 HP + +++ P+D + + + Sbjct: 274 HPFTSKPVKFTVAPPKDFKDSWKNAK 299 >UniRef50_B0TDX6 Pseudouridine synthase, rlua family n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDX6_HELMI Length = 339 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 103/339 (30%), Positives = 151/339 (44%), Gaps = 34/339 (10%) Query: 1 MA-QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKV 59 MA + L V + G+R+ L +SR R++ +NGK +V Sbjct: 1 MAVSKEWLAHRVKPEEEGRRIGSILQFCL-GFSRRRLQILTRTDGFRLNGKRAHL-DRRV 58 Query: 60 LGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPG--AGNPDGTVLN 117 G+ + + EEE P + L ++YED D++I++KP + VHP T+ + Sbjct: 59 KEGDLLEVCLHQEEEGNLAPVAMELKVLYEDADLLILDKPPGIEVHPPEQRARFRPTLAH 118 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + HY+ R +HRLDKDTTG+ V AK A L L+ + R Y A+ G Sbjct: 119 GVAHYFAEKGIKARVRPLHRLDKDTTGICVFAKNAFAHQALDRQLRNGSLQRGYLAILRG 178 Query: 178 HMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRI--------------MEHFRVHT 222 G +D PI R P V G+ A+T YR+ E Sbjct: 179 LPAELVGVIDAPIGRDPEHHMRRMVRDDGERAITRYRVTQVIEPSGLEMKGAAESEGHWA 238 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT 282 + LETGRTHQIRVH H+ PL+GD +YGG + DRQALH+ Sbjct: 239 LAEVILETGRTHQIRVHFRHLGTPLLGDRLYGGDS--------------PRIDRQALHSA 284 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKD 321 + L P SG ++ A +P+DM L+ D +++D Sbjct: 285 WVTLLQPRSGEAVKVTAELPEDMARLLGGKANDGSKNED 323 >UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BL50_9LACT Length = 296 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 96/313 (30%), Positives = 153/313 (48%), Gaps = 21/313 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 + LT T + + L E +++ + + ++LVNG+ K V G+ Sbjct: 1 MNLTWTYPYS-SPMMMRSFLQE--KGITKTFLAHVKRNGKLLVNGREEIVLKTLV-PGDV 56 Query: 65 VAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 + + E E P IPLDI++ED+ ++I+NKP+ P +PD ++ N + Y Sbjct: 57 LTMVIPPEGEHETVVPSHIPLDILFEDDYLLIVNKPQGTASIPSQLHPDQSMANRVKGYL 116 Query: 124 PPIA-DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA--IGHMT 180 +V RLD+DTTG+M+ AK + ++L+ + I + Y A+ + Sbjct: 117 QTTRTQDCVTHVVTRLDRDTTGVMMFAKHRVVHAWMDQALRNKTIQKTYHAIVTKQDVLK 176 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 +D PI R + V P GKP++T Y + E ++ +++RL TGRTHQIRVH Sbjct: 177 EHDLIDAPIGRTDDSIINRCVRPDGKPSLTEYWLEETYQHSQLVKIRLHTGRTHQIRVHF 236 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + + PL+GD +YGG P RQALH + L HP++G +M A Sbjct: 237 SWLGCPLLGDDLYGGEKIEP-------------LMRQALHCSQLDFVHPMTGEKMCVKAL 283 Query: 301 IPQDMVELIEVMR 313 +P+DM E IE R Sbjct: 284 LPKDMAEWIEKDR 296 >UniRef50_B9L8H5 Pseudouridine synthase n=1 Tax=Nautilia profundicola AmH RepID=B9L8H5_NAUPA Length = 311 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 159/317 (50%), Gaps = 25/317 (7%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 + +R+D+ L++ + SR++I++ I + V VN K K K+ G+ V + + E Sbjct: 7 SDKNERVDKFLSQKL-NVSRNQIEQLIKNSLVSVNSKTIKKGGVKLQAGDTVDVEIKEAE 65 Query: 74 EARFEPQ-DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL---HYYPPIADV 129 ++ + + + + ++YEDED+++INKP +VVHP + T+++ L + IA Sbjct: 66 SSKEDYEVNFDIPVLYEDEDVLVINKPPGIVVHPAPSVKEATLVDWLKTKNYRLSTIAGE 125 Query: 130 PRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPI 189 R GIVHR+DK+T+G +++AK A L L+ + + R Y + + VD+PI Sbjct: 126 ERFGIVHRIDKETSGALIIAKNNKAHEFLSAQLKDKTMGRYYIMLLNEPLKEAVCVDKPI 185 Query: 190 SRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVG 249 +R+P R MA G+ A T + + +L TGRTHQIRVH++ I ++G Sbjct: 186 ARNPKNRLKMAYVKNGREAKTLFVPVYENVAAA----KLFTGRTHQIRVHLSTIGRYILG 241 Query: 250 DPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELI 309 D +YG + + K R LHA L HP SG ++ AP+ D + + Sbjct: 242 DTLYGKKEQ--------------KLPRVMLHAKELYFIHP-SGKKLSIIAPMFDDFKKNL 286 Query: 310 EVMRADFEEHKDEVDWL 326 ++EE D Sbjct: 287 PK-GFNYEETDTISDIF 302 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 162/324 (50%), Gaps = 30/324 (9%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+++ + TVSE G ++Q + + + S ++ + +L+N K ++ V Sbjct: 1 MSRKDWIEYTVSEQDTGMNVEQIVRQKL-NVSGRMMQRLTRSKGILLNRKQPFLQRQ-VK 58 Query: 61 GGEQVAINA-------EIEEEARFEPQ----DIP-LDIVYEDEDIIIINKPRDLVVHPGA 108 G+ +A+ + + +P+ +P +DI+YED+ ++I NKP ++VHP Sbjct: 59 AGDTIAVRVIERQEQVPRQPQHDTKPEGPNTPMPSIDILYEDDHLLIANKPAGMMVHP-I 117 Query: 109 GNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREIT 168 T+++AL + VHRLDKDT+G ++VAK+ L+ I Sbjct: 118 KQETDTLVHALAAVLAARGEQTSVHPVHRLDKDTSGAILVAKSSYGHQLADRLLREGGIH 177 Query: 169 REYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLR 227 REY AVA G ++ G GT+D PI R T V G PA+THY + + T R+ Sbjct: 178 REYLAVASGVLSEGAGTIDAPIGRDARHPTKRRVVESGDPAITHYEVQQTSEEMTLARVW 237 Query: 228 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 287 LETGRTHQIRVH AHI HPL GD +YGG RQALHA+ L Sbjct: 238 LETGRTHQIRVHFAHIGHPLAGDTMYGG--------------ARGLLRRQALHASKLSFL 283 Query: 288 HPISGIEMEWHAPIPQDMVELIEV 311 HP+ E+ APIP DM L++ Sbjct: 284 HPLLEKEIVVEAPIPSDMKRLMQA 307 >UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38VN9_LACSS Length = 306 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 145/321 (45%), Gaps = 25/321 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKVLGGE 63 ++ ++++ G L L + SRS++ + ++LVNG+ +++ + Sbjct: 1 MKFEWQYTDSE-GCILRNFLRRH--EISRSQLSKIKFSGGQILVNGQEAH-TNIRLVQND 56 Query: 64 QVAINA-EIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V + P L I YED+ +I++KP + P +P+ T+ N + Y Sbjct: 57 VVTVYLAPEVAVEHVIPVKGDLKIAYEDDHFLIVDKPAFVASLPAPNHPNNTMANFVKQY 116 Query: 123 Y-PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH--- 178 A+ +V RLD+DT+GLM+ K A + L LQ +E+ + Y A+A G Sbjct: 117 LIDEQAESLAVHVVTRLDRDTSGLMMFTKHGFAHSLLDRQLQSKELQKTYIAIASGDMRE 176 Query: 179 -MTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237 + +D PI R V GK ++T Y H T ++L+L TGRTHQIR Sbjct: 177 DLPQHAWIDRPIKRSEEFYMRRVVGEGGKRSLTEYWQAAHGDGATLVKLKLLTGRTHQIR 236 Query: 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEW 297 VH A + H L+GD +YG + RQALH L YHP + Sbjct: 237 VHFASLGHSLIGDNLYG--------------ESNDLLPRQALHCRQLTFYHPFEERTITV 282 Query: 298 HAPIPQDMVELIEVMRADFEE 318 +P+P D ++ + DF+E Sbjct: 283 KSPVPADFSAVLAQRQFDFDE 303 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 90/310 (29%), Positives = 148/310 (47%), Gaps = 21/310 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + V N + + + + S + + + + +NGK G+ + Sbjct: 21 IKYVVEHNFENRSIKSIIKREYS-ISSRFLSKLKQEDLIRLNGKPAKNWFTP-KAGDVIE 78 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E I ++ VYEDE +++I+KP +VVHP G + T+ +AL+HY + Sbjct: 79 LVMPKESSYFTPYSGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIHYMDTV 138 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTV 185 + + ++RLD DTTGL+++AK Q +V ++R + + Y AV G G + Sbjct: 139 GEEFKIRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCNREGII 198 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQIRVHMAHI 243 D PI + V GKP++T Y+++ + L +RL TGRTHQIRVH+ HI Sbjct: 199 DAPI-KAVEGEPRRQVMEGGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQIRVHLKHI 257 Query: 244 THPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQ 303 P++GD YGG+ DRQ LH+ LR HP+S +E A +P Sbjct: 258 GCPILGDEFYGGKES---------------ADRQLLHSRYLRFTHPVSKKIVELTANLPD 302 Query: 304 DMVELIEVMR 313 D+ ++ M+ Sbjct: 303 DIASILTHMQ 312 >UniRef50_C5J6Q2 Pseudouridine synthase n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6Q2_MYCCR Length = 306 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 161/315 (51%), Gaps = 32/315 (10%) Query: 3 QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 +++L R+D +A+ + SR + I V V+ KV +K + G Sbjct: 5 NKIELIYQ----GEKTRIDLVVAKHL-NVSRKISRYLIEANSVKVDNKVVNKVNFLLREG 59 Query: 63 EQVAI-NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 + ++I N E + + E Q + +IVY+D DII+INKP++LVVHPG GN D T++N LLH Sbjct: 60 QFISILNNYQEPQLKVEAQKVDFEIVYQDNDIIVINKPKNLVVHPGNGNWDKTLVNGLLH 119 Query: 122 YY----PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 + + R GIVHRLDKDT+GL++VAK A L + L+ EI R+Y A+ +G Sbjct: 120 EFATNLSDVNGEIRPGIVHRLDKDTSGLLLVAKNNQAHKYLAKQLENHEIERKYIAIVVG 179 Query: 178 HMTA-GGTVDEPISRHPTKRTHMAVHP-MGKPAVTHYRIMEHF----RVHTRLRLRLETG 231 + ++ PI R RT V K A+T+ ++ F + ++ LETG Sbjct: 180 KIPHTKMRINLPIGRDNQNRTKKVVSSFNSKNAITNVELINTFVYKNEHFSIVKCILETG 239 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH++HI +P+ GDPVYG + Q LHA + H + Sbjct: 240 RTHQIRVHLSHIGYPIYGDPVYGKKIDDLG---------------QRLHAYEITFKH-LD 283 Query: 292 GIEMEWHAPIPQDMV 306 G M + +P + Sbjct: 284 GRLMNFKTEMPDEFK 298 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 177/312 (56%), Gaps = 21/312 (6%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M ++ + E +R D LA ++ DYSRS ++ QRV VN K+ K+ Sbjct: 1 MQEK-----IIYEKFERERADSYLASIYKDYSRSYFQKLTDRQRVFVNDKIIP-VSHKLK 54 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 G+ + I E EE+ + +P+ I +DI+YED+DI+++NK +VVHP G+ GT+LNAL+ Sbjct: 55 RGDIITIEFEKEEKFQIKPEKIKIDIIYEDDDIVVVNKRSGIVVHPSYGHLSGTLLNALM 114 Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 Y A ++HRLDKDT+G++V AKT A+ + + LQ+R + + Y A G + Sbjct: 115 GY---SAGKYNPYLIHRLDKDTSGVIVFAKTEKAKISISKQLQKRVVKKIYYAAVKGVIA 171 Query: 181 AG-GTVDEPISRHPTKRTHMAVHPMGKP-AVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 G + P+ R P R ++V+P+ K A+T ++++E +T L++R+ TGRTHQIR Sbjct: 172 ENRGIIKAPLGRSPKNRKLVSVNPLAKKVAITEFKVIERKDDYTLLKVRIITGRTHQIRS 231 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 HM +I HP++GD YGG L++ +RQ LHA + HP + +++ Sbjct: 232 HMKYINHPVIGDKQYGGPGTI----------GLKRCERQMLHAHNITFTHPSTSKTVKFI 281 Query: 299 APIPQDMVELIE 310 A +P DM + + Sbjct: 282 AQLPNDMKAIFK 293 >UniRef50_B7GEZ0 Pseudouridine synthase n=7 Tax=Bacillaceae RepID=B7GEZ0_ANOFW Length = 315 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 94/302 (31%), Positives = 151/302 (50%), Gaps = 22/302 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 L ++ G L+QA + + + EW + + V +N + + +++ Sbjct: 21 WLLFEAPKSWGGLSLEQAFQTKW-FVPKKMLHEWRMTKGVAINDNIAP-FHTIISPNDRI 78 Query: 66 AINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPP 125 I EE+ P +PL IV+ED+ ++++NK + VHP T+ NA+ ++ Sbjct: 79 RIRI-KEEQIEPTPTYVPLHIVFEDDHVLVVNKRAHMDVHPTQPGQTNTLANAVAFHFQC 137 Query: 126 IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGT 184 + +HRLD+DT+G+++ AK A L + L +R I R Y A+ G++ GT Sbjct: 138 EGIYSKVRHIHRLDRDTSGVILFAKHALAGAILDQYLAKRTIRRTYIALVHGYVKQKKGT 197 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQIRVHMAH 242 ++ PI R T V G A+THY +++ + + +RL L+TGRTHQIRVHM++ Sbjct: 198 IEAPIGRDRHHPTRRRVSKTGDTAITHYERLQYDKQKHVSLVRLTLDTGRTHQIRVHMSY 257 Query: 243 ITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIP 302 I HPLVGD +YGG+P DRQALHA L HP + + A +P Sbjct: 258 IGHPLVGDTLYGGKPW---------------IDRQALHAFSLSFLHPFTEELITCSA-LP 301 Query: 303 QD 304 + Sbjct: 302 DE 303 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 26/308 (8%) Query: 16 LGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEI---E 72 +R+D+ L E DYSR+ IK+ + VLVN + K + + V I E + Sbjct: 9 SPKRIDKFLVE-VTDYSRTSIKKMLEQNLVLVNDNIITKQSYLLQKNDSVEIKNEQCVID 67 Query: 73 EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRA 132 + P PL+IV+ED+D+++INKP ++VHP + T+ NAL HY Sbjct: 68 SQKELLPFACPLEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHYLKTDD----F 123 Query: 133 GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT---AGGTVDEPI 189 I HRLDK+T+GL+V+ K A L + ++ + + Y A+ ++EPI Sbjct: 124 YITHRLDKNTSGLIVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEPI 183 Query: 190 SRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPL 247 + M K A++ +++E ++ + + + TGRTHQIRVHM HI HP+ Sbjct: 184 GHSYQDKLRMKTGDAKNVKEAISIVKVIEQYQNTALVEVSIITGRTHQIRVHMRHINHPI 243 Query: 248 VGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 307 DP+YG Q LH+ + HP + +E+ +P + + Sbjct: 244 YNDPLYGISKHTTPYE-------------QYLHSFYISFIHPSTNEIVEFKTLMPNEFIN 290 Query: 308 LIEVMRAD 315 LI+ + + Sbjct: 291 LIKEWKTN 298 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 145/322 (45%), Gaps = 21/322 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 A RV T+ E + GQRLD L +SR+ I V VN K ++ Sbjct: 8 ANRVTF-VTIDEGRHGQRLDNFLFTHLKGVPKSRVYRIIRSGEVRVNKGRA-KQTTRLCT 65 Query: 62 GEQVAINAEIEEEARFEP-------QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGT 114 G+ V + ++ + + VYED+ + + NKP L VH G+G G Sbjct: 66 GDVVRVPPIRTSDSTAPAAVSEGLAERLRRACVYEDDQLFVFNKPAGLAVHGGSGVSLG- 124 Query: 115 VLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 174 ++ AL +P ++ +VHRLD+DT+GL++VA+ +L +Q +I + Y + Sbjct: 125 LIEALRVMFPQERELE---LVHRLDRDTSGLIMVARRRSFLRKLQRLMQGGQIEKRYWLL 181 Query: 175 AIGHMTAGGTVDEPISRHPTKRTH-MAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 G T+D P+ + + V GKP+VTH+R++E F + LETGRT Sbjct: 182 CQGFKGKERTLDAPLLKMMNGNERIVRVSREGKPSVTHFRLLERFAQAQLVEATLETGRT 241 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH L+GD YG A + R LHA L HP +G Sbjct: 242 HQIRVHSQFGGFALLGDSKYG-------IAKGEALLAEIGRRRLCLHARTLVFVHPNTGK 294 Query: 294 EMEWHAPIPQDMVELIEVMRAD 315 + AP+ D ++ +R+ Sbjct: 295 RLTVTAPLDDDYEAILTALRSK 316 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 314 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 148/323 (45%), Gaps = 23/323 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 M+ + V+ G R D L++ SR+ I + + G+ K + Sbjct: 10 MSD---ICFKVTSQFSGCRFDVCLSK-LMGVSRASAISLIERNQAKILGRKSQKSS-ILQ 64 Query: 61 GGEQVAIN----AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 G+ + ++ AE +EE E + I+Y D+D+++I+KP + H G TV Sbjct: 65 DGDTIVVDQKESAEQKEEQNNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVP 124 Query: 117 NALLHYYPPIA----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYE 172 L I D R GIV RLD T+GLM+V KT A + + + + Y Sbjct: 125 ECLEAVGIDIKTTLCDESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYH 184 Query: 173 AVAIGHMTAGG-TVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETG 231 A+ G + T+D PI R + GKPAVTH+ ++E F T + + LETG Sbjct: 185 ALVQGDLAQDKATIDAPIGRAKVSDFRFTITSDGKPAVTHWDVLERFSQATLVSVNLETG 244 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVH + I HPLVGD +YG P ++ RQ LH+ L HP + Sbjct: 245 RTHQIRVHFSSIGHPLVGDSMYGANP---------VLAQKLGLQRQWLHSMELTFTHPRT 295 Query: 292 GIEMEWHAPIPQDMVELIEVMRA 314 G + + P D+ +E MRA Sbjct: 296 GKSVTVKSHYPLDLQHALEAMRA 318 >UniRef50_C0X7U3 Pseudouridine synthase n=21 Tax=Enterococcus faecalis RepID=C0X7U3_ENTFA Length = 297 Score = 314 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 143/314 (45%), Gaps = 23/314 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWI-LDQRVLVNGKVCDKPKEKVLGGE 63 ++ T + Q + L E S+ + + ++ VNG + G+ Sbjct: 1 MEFQWTYDKETTQQ-VKYFLKEQ--GVSKGLLAKVKFQGGKIQVNGT-VQNAIYPLQTGD 56 Query: 64 QVAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V + E E D P++IV+ED+ +++NKP + P +P GT+ N + Y Sbjct: 57 VVKMTIPDEAEHETLLTDDEPIEIVFEDDHFLVVNKPAGIASIPAQYHPSGTMANRVKGY 116 Query: 123 YPPIADVPRA-GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 Y V + +V RLD+DT+GLM+ AK A + + L+ +++T+ Y A+ G + Sbjct: 117 YKRQNYVNQVIHVVTRLDRDTSGLMLFAKHGFAHALIDQELREKKVTKIYYALVGGAIEQ 176 Query: 181 --AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 +++PI R + V G+ A T Y + + +R++L TGRTHQIRV Sbjct: 177 LNEHQLIEKPIGRDLSSLLKRQVIETGQFASTEYWLAKRGAQAAAVRIQLHTGRTHQIRV 236 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H I L+GD +Y G+ + +RQALH L HP + + Sbjct: 237 HFEAIGCSLLGDEMYHGK-------------MDQGIERQALHCMELIFTHPFTKETVHLI 283 Query: 299 APIPQDMVELIEVM 312 +P+ +DM + + + Sbjct: 284 SPLAEDMKSVDDTL 297 >UniRef50_Q1WS43 Pseudouridine synthase n=3 Tax=Lactobacillus RepID=Q1WS43_LACS1 Length = 296 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 145/313 (46%), Gaps = 22/313 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKVLGGE 63 ++ T E+ L + L S + + +VLV+GK +V G+ Sbjct: 1 MKFTWN-KESDEKMTLKKFLKN--KGVSHRTLSSLKKGNGKVLVDGKK-RSLSIEVGKGK 56 Query: 64 QVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 I + + + PLDI+YED + ++++KP L PG N T++N + + Sbjct: 57 ITLILPPEKSDENVKMSKEPLDIIYEDSNWLVVDKPPLLSSVPGPSNRTDTLVNRVKFHL 116 Query: 124 -PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TA 181 + ++ RLD+DT+GL++VAK AQ + + ++ I ++Y AV G + Sbjct: 117 WQQKSKDLVPHVITRLDRDTSGLVLVAKHRFAQGLINKQVEEHSIDKKYLAVVEGIITEK 176 Query: 182 GGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV-HTRLRLRLETGRTHQIRVHM 240 G +D+P+ M V GK A T Y + E+ T + +L TGRTHQIR H Sbjct: 177 HGIIDKPLGPRENGIGQM-VTDTGKIAKTEYWVREYLGDKATLVECKLHTGRTHQIRAHF 235 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + I H LVGD +YGGR +RQALHA L P + E + + Sbjct: 236 SSINHALVGDELYGGR-------------LDWGLERQALHAYQLAYVDPFTQEEKLFKSE 282 Query: 301 IPQDMVELIEVMR 313 +P+D+ LI ++ Sbjct: 283 MPKDLENLIVRLK 295 >UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELJ1_PEDAC Length = 301 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 96/313 (30%), Positives = 156/313 (49%), Gaps = 23/313 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKVLGGE 63 ++ + V +++ Q L L SR+ +K + ++LVN + + E V G+ Sbjct: 1 MKFSWQV-QDESPQHLRTFLTR--KRISRALLKSIKFNGGKILVNEQP-KRTNEMVTAGD 56 Query: 64 QVAINAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 QV + E P+D++YED+D +++NKP L A N T++N + +Y Sbjct: 57 QVTVELPPEPGNPHVVRSRQPIDVIYEDQDYLVVNKPPFLPTVQSARNQTDTLVNRVKNY 116 Query: 123 YPPIA-DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 Y + +V RLD+DT+GL++ AK A T + + L++ + + Y A+A G Sbjct: 117 YAERDYESQVVHVVTRLDQDTSGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQ 176 Query: 182 -GGTVDEPISRHPTKRTHMAVHP--MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 G +D PI R P V GKP+ T Y ++E + L+++L TGRTHQIRV Sbjct: 177 SHGLIDAPIERDPASFIKRRVASAGNGKPSKTEYWVLEQTDTDSLLKVQLHTGRTHQIRV 236 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H + + HPL+GDP+Y ++ R RQALH L+ + G +++ Sbjct: 237 HFSELHHPLIGDPLY-------------NETSFRSLQRQALHCFSLKFENVFRGKKIDVQ 283 Query: 299 APIPQDMVELIEV 311 APIP DM+E + Sbjct: 284 APIPNDMLEYWKK 296 >UniRef50_Q38W13 Pseudouridine synthase n=4 Tax=Lactobacillus RepID=Q38W13_LACSS Length = 300 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 22/309 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR-VLVNGKVCDKPKEKVLGGE 63 +++ V Q Q + Q L + S+ + V +N P ++V G+ Sbjct: 2 MEIKWQV-ATQQSQTMKQFLLK--NGISQRLYAKIKSQGLPVRLNN-RLSSPADQVQNGD 57 Query: 64 QVAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 QV++ E + +P+ ++YED+ +++NKP L PG N T+LN + Y Sbjct: 58 QVSLTLPAELADETVAVSGVPIKVLYEDDYWLVVNKPAGLATIPGPTNTTDTLLNRIKGY 117 Query: 123 YPPIAD-VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH-MT 180 + I+ RLD DT+G+++ AK AQ+ L +++ ++ + Y AV G + Sbjct: 118 WQQNGATDLVPHIITRLDFDTSGIVLAAKHQVAQSLLQPQIEQHQLQKFYLAVVAGTGLP 177 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 GT+ PI R + V G+ A T Y + T L++++ TGRTHQIRVH+ Sbjct: 178 EFGTIKAPIGRVGVEP-RRRVIADGQSAWTDYWRLAQDERLTVLKVQIHTGRTHQIRVHL 236 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + + HPLVGD +Y DRQALHA L P S + ++ AP Sbjct: 237 SDLDHPLVGDQLY-------------EGPLGWGIDRQALHAYQLTFNDPFSQQKRQFTAP 283 Query: 301 IPQDMVELI 309 IP D+ ++ Sbjct: 284 IPADIQAIL 292 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 144/325 (44%), Gaps = 23/325 (7%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 V T+S ++ GQR+D L +S I + V VN KP+ K+ Sbjct: 4 NNPVVQLITISADEAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRI-KPEYKLAD 62 Query: 62 GEQVAINAEIEEEARFEPQDIPLD--------IVYEDEDIIIINKPRDLVVHPGAGNPDG 113 G+ V + E LD I++ED+ ++++NKP VH G+G G Sbjct: 63 GDVVRVPPVRVAEREEVQVSAKLDKVAALADCILFEDDYLLVLNKPSGTAVHGGSGLSFG 122 Query: 114 TVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 173 V+ L P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A Sbjct: 123 -VIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLA 178 Query: 174 VAIGHMTAG-GTVDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLET 230 + G + + P+ ++ + V GKP+ T ++I E F T ++ T Sbjct: 179 LVRGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEGKPSETRFKIEERFEHATLVKASPVT 238 Query: 231 GRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPI 290 GRTHQIRVH H HP+ D YG R + R LHA LR HP Sbjct: 239 GRTHQIRVHALHAGHPIAFDDRYGYREFDQQL-------QGTGLHRLFLHAAALRFEHPN 291 Query: 291 SGIEMEWHAPIPQDMVELIEVMRAD 315 +G M AP+ + + +R + Sbjct: 292 TGETMRIEAPLDNQLRHCLLALRKN 316 >UniRef50_Q8D220 Pseudouridine synthase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D220_WIGBR Length = 314 Score = 313 bits (804), Expect = 5e-84, Method: Composition-based stats. Identities = 120/300 (40%), Positives = 193/300 (64%), Gaps = 4/300 (1%) Query: 14 NQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEE 73 +Q G+RLD+++AE+FP+YSR++IK++I++ +V VN PK+ + GGE + I ++ Sbjct: 14 SQNGKRLDKSIAEIFPEYSRNKIKKFIINNQVKVNDICIINPKKNIKGGECIKIKIS-KK 72 Query: 74 EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAG 133 + ++YED+DI++INK +D++VHPG + T+L+ +L YP ++ RAG Sbjct: 73 NNLISKKRKTYKLIYEDDDILVINKYKDVIVHPGCDKHENTLLHDILFNYPDSKNLYRAG 132 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 IVHRLDKDTTGLM++A+ +Q +L++ L+ R I REY AV +G + GTV PI R+ Sbjct: 133 IVHRLDKDTTGLMLIARNSFSQKKLIKLLKLRLINREYRAVLLGKIICDGTVSAPIIRNS 192 Query: 194 TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVY 253 RT M VH GK ++THY+I+++F + +++ LE+GRTHQIR+HM++I HP++GD VY Sbjct: 193 KNRTRMKVHISGKESITHYKIIKNFNDFSYVKINLESGRTHQIRLHMSYINHPVLGDFVY 252 Query: 254 GGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 G + + ++ R ALHA ++ HPI+ M +P DM L++ ++ Sbjct: 253 GNKKN---KYIKTLYKSIFNISRHALHARKIKFIHPINNCLMVHKIDLPDDMKILLKNLK 309 >UniRef50_A7I2U9 Pseudouridine synthase n=23 Tax=Campylobacterales RepID=A7I2U9_CAMHC Length = 357 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 98/329 (29%), Positives = 157/329 (47%), Gaps = 37/329 (11%) Query: 19 RLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFE 78 RLD L ++ SR++I I + + VN V +K K+ + V IN +++E Sbjct: 24 RLDIFLTKILK-ISRNKILNLIEENHIFVNNSVQNKASFKLKNDDIVGINFPLKKENENL 82 Query: 79 PQD--IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL---HYYPPIADVPRAG 133 Q+ ++I+YED+D++++NKP +VVHP + T+ L + I RAG Sbjct: 83 KQNANFDIEILYEDDDLLVLNKPSGVVVHPAKSVKEPTLAEWLKQKKYMLSSINGDERAG 142 Query: 134 IVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHP 193 IVHRLDK T+G ++VAKT A +L L+ + + R Y A + VD I+R+P Sbjct: 143 IVHRLDKQTSGAILVAKTDFAHVKLAAQLKDKSMGRIYLAFLDLALKENVCVDRFIARNP 202 Query: 194 TKRTHMAVHP----MGKPAVTHY------RIMEHFR---------VHTRLRLRLETGRTH 234 + R AV P + A + + I+++F+ + +L TGRTH Sbjct: 203 SNRLKKAVVPPNENGARSAKSAFLNIANDTILQNFKPLNFSQNQTNFNLIAAKLFTGRTH 262 Query: 235 QIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIE 294 QIRVH++ I ++GD +YG + K R LHA +L HP + + Sbjct: 263 QIRVHLSSINRHIIGDFLYGFKSDFDK------------IKRIFLHAYLLYFTHPRTNRQ 310 Query: 295 MEWHAPIPQDMVELIEVMRADFEEHKDEV 323 + A IP + LIE E ++ + Sbjct: 311 ILISAKIPSEFKNLIEKSDFKDEIYEKIL 339 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 155/319 (48%), Gaps = 21/319 (6%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 LT T+SE+ GQRLD+ + + D S + + +++ VNG K ++ V G+ V Sbjct: 2 LTFTISEDAAGQRLDKLVRKALRDVPLSHVYKMFRTRKIRVNGGR-GKAEQLVAAGDVVV 60 Query: 67 INAEIE-------EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 I + E E + +++ED D++ ++KP L HPG G T++ Sbjct: 61 IRGDEERLLARQEPEPGARAGAVTFGVLHEDADVLAVDKPAGLAAHPGTGISGATLVEMA 120 Query: 120 LHYYPPIADVP----RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR-EITREYEAV 174 + AD+P + HRLD+DT+G+++VAK RL E ++ + Y A+ Sbjct: 121 RAHLGTPADLPPTEFKPSPAHRLDRDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLAL 180 Query: 175 AIGHMTAG-GTVDEPISRHP-TKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGR 232 G M GT+D P++ H T R+ A + A+T ++++ + + L + +ETGR Sbjct: 181 VKGKMPREAGTIDLPLAEHEQTARSKAARGVNLQEALTRWKVVSAMKEASLLAVTIETGR 240 Query: 233 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISG 292 THQIR H+ + HP++GD YG P R LHA L L HP +G Sbjct: 241 THQIRRHLEAVGHPVLGDRRYGDFPTNRAARQR------WGLRRMFLHAWRLELPHPTTG 294 Query: 293 IEMEWHAPIPQDMVELIEV 311 + AP+P +++E + Sbjct: 295 APLRLEAPLPGELLEALSR 313 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 150/335 (44%), Gaps = 29/335 (8%) Query: 7 LTATVSENQLGQRLDQALAEMFP----DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGG 62 TV + GQR+D L + RS I + V VN + KP ++ G Sbjct: 20 RRVTVDAHYAGQRIDNFLLRELGATHGEVPRSLIYRILRTGEVRVNSQRA-KPTTRLATG 78 Query: 63 EQVAINAEIEEEAR------------FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGN 110 ++V I + D+ IVYEDE ++ +NKP L VH G+ Sbjct: 79 DEVRIPPLKLQSPSQESAGVISANWLARAADM---IVYEDEALLAVNKPAGLAVHGGSNI 135 Query: 111 PDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ-RREITR 169 P G ++ + + + + HR+D+DT+GL+++AKT L + + Sbjct: 136 PFG-LIELMRQH---TGLGEKLELAHRIDRDTSGLLILAKTRATLHSLQTQFRPEGHAEK 191 Query: 170 EYEAVAIGHMTAG-GTVDEPISRH--PTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRL 226 +Y A+ GH VD P+ + + + V+P GK AVTH+ ++ + T LR Sbjct: 192 QYLAIVHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQGKEAVTHFAVLAANKNATLLRA 251 Query: 227 RLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL 286 +LETGRTHQIRVH AH HP+VGD YG R + S R+ LHA L L Sbjct: 252 QLETGRTHQIRVHTAHENHPIVGDEKYGQREWDKRLFPSTGASARRRPP-LLLHAYRLML 310 Query: 287 YHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKD 321 HP + ++ APIP L + + EH Sbjct: 311 THPQTEQPLQLTAPIPDKWRSLAQQLNLTLPEHDP 345 >UniRef50_C4V3I7 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3I7_9FIRM Length = 294 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 90/283 (31%), Positives = 140/283 (49%), Gaps = 20/283 (7%) Query: 27 MFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 86 S S + +NG + + G+ +A + I + P+ +PL I Sbjct: 22 HVHGISGSLWRRIKHHGAFTLNGIPAVAARTMLKDGDWIAYDLPIV--SSVIPESLPLSI 79 Query: 87 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLM 146 +YED+D+++++KP +VHP GT+ NA+ YY HRLD++T+GL+ Sbjct: 80 IYEDDDLLVLDKPAGQLVHPTTKETHGTIANAVRGYYAACGVHLDFHPCHRLDRNTSGLL 139 Query: 147 VVAKTVPAQTRLVESLQRREITREYEAVAIGHM-TAGGTVDEPISRHPTKRTHMAVHPMG 205 ++AK Q ++ + + REY A+ G + G +D PI+R V G Sbjct: 140 LIAKHPEVQYQIAQQ---NTLRREYLALIAGSLTPPEGCIDVPIARALPSIILRCVSTEG 196 Query: 206 KPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASE 265 K A THY ++ ++ LRL+L+TGRTHQIRVH+AH+ HPL+GD +YGG Sbjct: 197 KSACTHYVTVQTDGRYSLLRLQLDTGRTHQIRVHLAHLGHPLLGDDLYGG---------- 246 Query: 266 AFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308 T + R ALH+ L L HP + + A +P DM + Sbjct: 247 ----TRAEIARHALHSAHLTLVHPRTKKMLALSALLPADMARI 285 >UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PT91_9SPIO Length = 326 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 39/331 (11%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 V + RLD + + P+ +RSR+K + V +NG+ V G+++ Sbjct: 5 FEFKVPDGTGKLRLDAFCSSVLPNMTRSRLKTGMQS--VELNGRQAKLSSS-VQAGDRIK 61 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY--- 123 + P+ IPL I+YED D+I +NK +V HP AGN GT++ AL +Y Sbjct: 62 LMWNNPSPDFLIPEHIPLQILYEDNDVIAVNKRVGMVTHPAAGNWTGTLVQALAYYRLHT 121 Query: 124 -----------------PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRRE 166 D+ RAGIVHRLDKDT+G+++ A++ A+ L + + R Sbjct: 122 SPIHDKFAGLLEAEQGRGNFEDLLRAGIVHRLDKDTSGVLITARSAAAEAFLKDEFKMRR 181 Query: 167 ITREYEAVAIGHMTAG-GTVDEPISRHPTKRTHMAVHPM---GKPAVTHYRIMEHFRVHT 222 + Y A+ G G ++ + R R GK A + Y+++ + + Sbjct: 182 TEKYYAAILNGVPEKRTGVIETSVFRDEHSRIRFTASADLAKGKYARSRYKVLRVYGRYA 241 Query: 223 RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHAT 282 + +++TGRTHQIR+H I P+VGDP+YG + K LHA Sbjct: 242 LVLFKIDTGRTHQIRLHARFIGCPIVGDPLYGKKEAEWKPYG------------MMLHAY 289 Query: 283 MLRLYHPISGIEMEWHAPIPQDMVELIEVMR 313 L + P + + + AP+P+ ++ ++R Sbjct: 290 RLCVALPSTREKTVFTAPLPRRFQTVLHLLR 320 >UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBV3_SORC5 Length = 345 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 113/341 (33%), Positives = 163/341 (47%), Gaps = 35/341 (10%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDY----SRSRIKEWILDQRVLVNGKVCDKPKE 57 A + V + RLD+ + + SR+ ++ WI RVLV+G+ + Sbjct: 5 AGALHFRFRVDDGDPRDRLDKLVVHLLERAGHAASRAAVQRWIAAGRVLVDGEPA-RASV 63 Query: 58 KVLGGEQVAINAEIEEEARFEPQ-DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVL 116 V V + E + + D+ + +VYEDE +++I+KP LVVHP G+ GT++ Sbjct: 64 AVRASALVEVRPEEPSPSPTAAEPDVVIPVVYEDEHLLVIDKPAGLVVHPARGHASGTLV 123 Query: 117 NALLHYY---------PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREI 167 N LL R GIVHRLD+ T+GL+VVAK P + L + R I Sbjct: 124 NGLLALPGFALAPADPRDPMGHVRPGIVHRLDRGTSGLLVVAKDEPTREALKDRFARHAI 183 Query: 168 TREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMG------------KPAVTHYRIM 215 REY A+ G T D RHPT R G + AVTH R++ Sbjct: 184 EREYAAIVAGE-ARDATYDTLHGRHPTDRLRFTSWIRGGAGAPGSHVAAPRRAVTHVRVI 242 Query: 216 EHFRV-HTRLRLRLETGRTHQIRVHMAHITH-PLVGDPVYGGRPRPPKGASEAFISTLRK 273 E T + LETGRTHQIRVH+A P++GDP+YG P+ P A + + Sbjct: 243 ERLGDAATVVACSLETGRTHQIRVHLAERGRTPVLGDPLYGKPPKKP-----AVRAIAEE 297 Query: 274 FDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 RQALHA +L HP + + W + +P DM + ++ +RA Sbjct: 298 LGRQALHARVLGFIHPATQKPVRWESALPADMRKALDQLRA 338 >UniRef50_B0SGK3 Pseudouridylate synthase, 23S RNA-specific n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SGK3_LEPBA Length = 312 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 27/316 (8%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPD-YSRSRIKEWILDQRVLVN---GKVCDKPKEKVL 60 +Q+ TVSE+ RLD L + D SRS +++WI V N +V K KV Sbjct: 1 MQIFVTVSEDYDQSRLDVFLKDNAGDDLSRSTVQKWIDSGFVT-NKTKDQVVHKNGYKVA 59 Query: 61 GGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120 GE+ ++ +R EP + + ++Y++++ ++I+K + H G G+ +++N LL Sbjct: 60 LGEEFVVDVIARPPSRLEPIAMDIPVLYDEDEFMVIHKKAGIACHSGPGDDSPSLVNGLL 119 Query: 121 HYYPPI---ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVA-I 176 + + + R GIVHRLDK T G++++AKT A L + Q R + + Y A Sbjct: 120 YQFKNLSGTGGERRPGIVHRLDKPTEGVLIIAKTDRAHAALSKLFQDRLVEKTYYAWVLQ 179 Query: 177 GHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIME-----HFRVHTRLRLRLETG 231 + A GT++ PI RHP +R M V G+ A+THY+ + R + ++L LETG Sbjct: 180 APVEAEGTINMPIGRHPVERVKMCVREDGRMAITHYKTEKIVQTQTGRKFSLMKLGLETG 239 Query: 232 RTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPIS 291 RTHQIRVHMA + P+VGD +Y + L A L HP Sbjct: 240 RTHQIRVHMAKVGCPVVGDSLYSRSAKDYTQYG------------LLLFAKKLDFPHPFV 287 Query: 292 -GIEMEWHAPIPQDMV 306 + P+ Sbjct: 288 PDKRIVVELDFPERFK 303 >UniRef50_B1YJB1 Pseudouridine synthase n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJB1_EXIS2 Length = 293 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 95/305 (31%), Positives = 144/305 (47%), Gaps = 23/305 (7%) Query: 6 QLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQV 65 Q+ V+ + G + SR + +L N + E V G+++ Sbjct: 4 QIEQQVTSIEDGWSVGHFCTTRL-HISRKMLVSIKHHGDILRNEQHV-NVNEPVHAGDRI 61 Query: 66 AINAEIEEEA-RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 124 + E+ A LDI++ED+ ++I+NKP + P +P+ ++ N +L YY Sbjct: 62 HVRFPEEQPAQDMHATSGELDILFEDDWLLIVNKPPGMASIPSRLHPERSLSNFVLGYYR 121 Query: 125 PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGT 184 IV+RLD+DT+GL+V AK A +L + Q + R Y A+ G + A T Sbjct: 122 QHQIPYAIHIVNRLDRDTSGLVVFAKHSLAHHQLSKMQQNGLLDRRYVALIEGTIPAQ-T 180 Query: 185 VDEPISRHPTKRTHMAVHPMGKPAVTHY---RIMEHF-RVHTRLRLRLETGRTHQIRVHM 240 +D PI + V G+ A+TH + F R +RL ++LETGRTHQIRVH+ Sbjct: 181 IDLPIGQTDHSFMERMVREDGQQAITHILTSEPITAFSRELSRLTIKLETGRTHQIRVHL 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 A + HPLVGD +Y G P RQALH+ HP +G M + AP Sbjct: 241 AALGHPLVGDTMYKGTP---------------LIARQALHSASATFPHPGTGEVMTFVAP 285 Query: 301 IPQDM 305 +P D+ Sbjct: 286 LPDDL 290 >UniRef50_C0EHV8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHV8_9CLOT Length = 299 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 99/314 (31%), Positives = 146/314 (46%), Gaps = 24/314 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKV 59 M + + + +V ++ L S I++ + ++G + + Sbjct: 1 MERILLVNISVPAQ-----VETILRREL-QLSTRIIRQLKRIPGGITLDGMPA-RVTDSA 53 Query: 60 LGGEQVAINAE--IEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLN 117 G+++ + + P P DI YED+D++++NKP VHP G+ + ++ N Sbjct: 54 RSGQELRLLLQTGEASSQSIRPVPGPFDIAYEDDDLLLVNKPAGTPVHPSPGHYEDSLAN 113 Query: 118 ALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 Y + V+RLD+ T+GL+ VAK AQ RL + L R Y AV G Sbjct: 114 YSAWQYAQRREQLVFRPVNRLDRGTSGLLCVAKNAHAQARLSQQLHTGAFERIYYAVVCG 173 Query: 178 HM-TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 A GT+D PI R P V P G AVTHY + +T L++RLETGRTHQI Sbjct: 174 APSPAAGTIDLPIGRTPGSVLKRRVDPQGARAVTHYETVRVNGAYTLLKIRLETGRTHQI 233 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RVH AH+ PL GD +YG R + ALH+ +RL HPISG E+ Sbjct: 234 RVHFAHLGCPLFGDFLYGTERRDV-------------VEGHALHSGEIRLLHPISGEEIR 280 Query: 297 WHAPIPQDMVELIE 310 P+P M L++ Sbjct: 281 CSVPLPAYMENLMD 294 >UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cystobacterineae RepID=Q1D114_MYXXD Length = 306 Score = 310 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 151/318 (47%), Gaps = 17/318 (5%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60 MAQ+ V G+RLD+ L++ P + R + I V + GK C +P K+ Sbjct: 1 MAQQ---KVQVPREAAGERLDRFLSKQVPGINLERARALIDSGAVRIRGKRC-QPTRKLW 56 Query: 61 GGEQVAINAEIEEEARFEPQDIP-LDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 GGE++ + A + P L ++++D ++I+NKP +VV P +V+ L Sbjct: 57 GGEEIELERPEPRAASVAASEGPVLPVLHDDSALVIVNKPPGIVVEP--EGRAASVVGLL 114 Query: 120 LHYYP--PIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 177 P + + + G+VHRLD++T+G + A+T A L+ S Q + + + Y + +G Sbjct: 115 AAQRPPFDVEGLAQPGVVHRLDRETSGCLAFARTDTAAAALLRSFQEKRVDKRYWTLVLG 174 Query: 178 HMTAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236 A G ++ P +R P P + A + + E F L + L+TGRTHQ+ Sbjct: 175 QPPAQGRLEGPYARDPADPRRFTTRVPSARRAALSFEVRERFADAALLEVDLDTGRTHQV 234 Query: 237 RVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEME 296 RV ++ P++ D +YG + R RQALHA L L P +G + Sbjct: 235 RVQLSEAGFPVLADSLYGPPE-------ARAHAAARALGRQALHAFTLELPSPATGQPVR 287 Query: 297 WHAPIPQDMVELIEVMRA 314 AP+P+D + V+R Sbjct: 288 VEAPLPEDFQRALTVLRG 305 >UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Methanococcus RepID=A4FXG9_METM5 Length = 298 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 162/313 (51%), Gaps = 19/313 (6%) Query: 2 AQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLG 61 +Q+ L T+ G +L L + F + S IK++ ++++ VN K K+ Sbjct: 3 SQKKILKVTIDSKIAGNKLIDVLKDDF-ELSNKMIKKFDKEKKIFVNSKNISLKS-KLKE 60 Query: 62 GEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLH 121 E V++ + +P+ + L ++YED+D++I++KP+++VVHP GT+ NA+ + Sbjct: 61 NETVSVEIDCGI-NNIDPEKLLLCVIYEDDDLLIVDKPKNMVVHPTKNVLSGTLANAISN 119 Query: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 + + V+RLD DTTGL+++AK + +L + + + + Y V GH+ Sbjct: 120 HQKINNQNYKIRFVNRLDMDTTGLLIIAKNSYSHQQLAKQMDEGILEKIYIVVVNGHLDS 179 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G +++ I + + GK + T Y+++E F + L ++L TGRTHQIRVH+ Sbjct: 180 KEGVIEDSIDLN-DDGIKRELSTFGKISKTKYKVIEEFNNVSVLEIKLLTGRTHQIRVHL 238 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 + + ++GD +YG +RQALH+ +LR HPI+ ME + Sbjct: 239 SSFGNNIIGDTLYGKTAD--------------LIERQALHSHILRFIHPITKENMEIRSK 284 Query: 301 IPQDMVELIEVMR 313 +P DM LI+ ++ Sbjct: 285 LPDDMENLIKNLK 297 >UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=B3PEU4_CELJU Length = 349 Score = 309 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 94/321 (29%), Positives = 146/321 (45%), Gaps = 27/321 (8%) Query: 9 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68 T+ GQRLD L +SRI + V VN +P K+ G+ V + Sbjct: 38 LTIDAELAGQRLDNFLMAQLKGVPKSRIYNLVRKGEVRVNKGR-SRPDYKLCAGDLVRVP 96 Query: 69 AEIEEEARFEPQD---------IPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNAL 119 EAR + +++E+E +++INKP L VH G+G G ++ L Sbjct: 97 PVRTAEARVAAPAKAGNQLVALLDQSVLFENEGLLVINKPPGLAVHGGSGVNLG-LIETL 155 Query: 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRR---EITREYEAVAI 176 P +VHRLD+DT+G ++VAK L +L+ + +I + Y A+ + Sbjct: 156 RQMRPEAR---YLELVHRLDRDTSGCIMVAKKRSYLRHLQAALRDKVEGQIEKVYCALVV 212 Query: 177 GHMTAG-GTVDEPISRHPT--KRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRT 233 GH A V+ P+ R ++ VHP GKP++T + +++ ++ T + R TGRT Sbjct: 213 GHWPARLHQVNAPLLRTEVGADERYVRVHPDGKPSLTLFNVIQRYQGFTLVEARPVTGRT 272 Query: 234 HQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGI 293 HQIRVH H H LVGD YG ++ R LHA+ L P Sbjct: 273 HQIRVHARHAGHGLVGDEKYGDDDINLHMRNQ-------GIKRLFLHASSLGFCLPGEAQ 325 Query: 294 EMEWHAPIPQDMVELIEVMRA 314 AP+PQD+ + + + + Sbjct: 326 MTWVEAPLPQDLAQPLSCLES 346 >UniRef50_C0MA80 Pseudouridine synthase n=6 Tax=Streptococcus RepID=C0MA80_STRE4 Length = 300 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 94/294 (31%), Positives = 133/294 (45%), Gaps = 21/294 (7%) Query: 29 PDYSRSRIKEWI-LDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEE-ARFEPQDIPLDI 86 D S+ + + + VNG V + G+ VAI+ EE + LDI Sbjct: 20 HDVSKGLLAKIKYKGGNIWVNG-VAQNAIYLLDIGDVVAIDIPNEESFEQLTAISHDLDI 78 Query: 87 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPR-AGIVHRLDKDTTGL 145 VYEDE +I+NKP P A + T+ N + YY + IV RLD+DT+GL Sbjct: 79 VYEDEHFLILNKPAGYASIPSAIH-SNTIANFIKAYYIKQDYPNKQVHIVTRLDRDTSGL 137 Query: 146 MVVAKTVPAQTRLVESLQRREITREYEAVAIGH--MTAGGTVDEPISRHPTKRTHMAVHP 203 M+ AK A RL + LQ+R I + Y A+ G + G + PI R V P Sbjct: 138 MLFAKHGYAHARLDKQLQQRAINKRYYALVCGQERLPDQGEIIAPIGRTDDSIITRTVTP 197 Query: 204 MGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG 262 GK A T Y+++ + + + + L TGRTHQIRVH AH+ PL+GD +YGGR Sbjct: 198 KGKYAKTSYKVIARYPENVSLVDITLHTGRTHQIRVHFAHLGFPLLGDDLYGGR------ 251 Query: 263 ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADF 316 RQALH L HP + + + D +I ++ Sbjct: 252 -------LDLGMTRQALHCHHLSFTHPFTESRSDHTICLTDDFESVIIDLQKKD 298 >UniRef50_D2RJW8 Pseudouridine synthase, RluA family n=2 Tax=Acidaminococcus RepID=D2RJW8_ACIFE Length = 285 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 88/304 (28%), Positives = 138/304 (45%), Gaps = 24/304 (7%) Query: 7 LTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVA 66 + ++ + L QRL L + S + K+ + VNG++ + + G++VA Sbjct: 1 MELFLAPSSLPQRLKSFLRDQ--GLSGTYWKKLKAAGALQVNGEIIQR-DLLLQPGDRVA 57 Query: 67 INAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126 + E EP++ PL I+ E E + ++KP LV H + + Y+ Sbjct: 58 WTF-LPEPCTLEPEEAPLSILEETELYLAVDKPAGLVTHNAGKERTPALSRRVAWYFQTH 116 Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-GGTV 185 V RLD++T+G+++ AK L L R + + Y A+ +GH G + Sbjct: 117 HISSAVHPVSRLDRETSGVVLFAKN----ACLHHMLSRNRLEKTYLALTLGHWEQPAGIL 172 Query: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITH 245 D PI R P V P G+PA T Y+++ + +R +LETGRTHQIRVH A H Sbjct: 173 DWPIGRRPGSIVERQVDPDGQPARTRYQVLGEKEGLSLVRFQLETGRTHQIRVHAAAAGH 232 Query: 246 PLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 305 PL+GD +YG P R LHA + P +G +E AP+P D Sbjct: 233 PLLGDTLYGTPGAP---------------GRHYLHAWKVAFREPFTGRPVEITAPLPPDF 277 Query: 306 VELI 309 ++ Sbjct: 278 RKVW 281 >UniRef50_C4ZAQ6 Pseudouridine synthase n=15 Tax=Clostridiales RepID=C4ZAQ6_EUBR3 Length = 295 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 154/314 (49%), Gaps = 24/314 (7%) Query: 1 MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWIL-DQRVLVNGKVCDKPKEKV 59 M ++ + ++EN G+ ++ L E Y+ + D +L NG E++ Sbjct: 1 MNRK--IDYKINENDTGKTVEGFLKEH--GYTHQVLVRLKQTDHGILRNGIWAY-TNERL 55 Query: 60 LGGEQVAINAEIEE-EARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118 + + + E P ++PLDI YED+DII+INKP D+ HP AGN D T+ NA Sbjct: 56 CKDDLITVQIVENECSDNIAPVNLPLDIAYEDDDIIVINKPFDMPAHPSAGNHDNTLANA 115 Query: 119 LLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGH 178 L++YY ++RLD+DTTGL +VAK A L ++ +R I R Y AV G Sbjct: 116 LMYYYGSQNKPFVYRCINRLDRDTTGLTIVAKHALAGGILGNAVAKRAIHRTYYAVCSGC 175 Query: 179 MTAGGTVDEPISRHPTKRTHMAVH-PMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQ 235 A + PI+R V G+ AVT + +++ + ++LRL TGRTHQ Sbjct: 176 TPACMRISAPIARKDASTIERCVDFKRGEYAVTDFIRIKYNPDNNLSLVKLRLLTGRTHQ 235 Query: 236 IRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEM 295 IRVHM +I PL+GD +Y RQALH+ L HP++G +M Sbjct: 236 IRVHMKYIGFPLIGDFLY--------------NPDYTYISRQALHSGRLVFTHPVTGQKM 281 Query: 296 EWHAPIPQDMVELI 309 + IP DM L Sbjct: 282 NLISDIPSDMKSLF 295 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 95/276 (34%), Positives = 143/276 (51%), Gaps = 8/276 (2%) Query: 46 LVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVH 105 ++G+ C KP K+ GEQ+ + ++ LDI+Y+D+ I +INKP ++ H Sbjct: 2 TIDGEPC-KPAHKLSAGEQLIVKPIAAYSDEQIGVNVHLDIIYQDDRIAVINKPAGMITH 60 Query: 106 PGAGNPDGTVLNALLHYYPP---IADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 162 P G+ GT+ L +P I R GIVHRLD+DT+G++V+AK A L Sbjct: 61 PAKGHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLDRDTSGVIVIAKDDAAHEFLKTQF 120 Query: 163 QRREITREYEAVAIGHMTAGGT-VDEPISRHPTKRTHMAV---HPMGKPAVTHYRIMEHF 218 Q R +EY A+ IG ++EP+ HP R MA+ GK A T Y ++E + Sbjct: 121 QDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRERMAIRRGDDEGKDAQTFYEVLERY 180 Query: 219 RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQA 278 + ++ +TGRTHQIRVH+ H HP++ DP+YG R G + +R A Sbjct: 181 QGFAAIKALPKTGRTHQIRVHLMHAGHPVLCDPLYGSRRFLSLGELQHDDDRTVLLNRTA 240 Query: 279 LHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRA 314 LHA + + HP G E+ AP+P D+ ++R Sbjct: 241 LHAHRIAIAHPDDGEIREFIAPLPADLERTQNMLRQ 276 >UniRef50_Q03PR9 Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03PR9_LACBA Length = 294 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 23/314 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQ 64 ++L V E L + L S + + VNG+ P + G+ Sbjct: 1 MELDWQVKEPVT--SLKRFLTNQ--GISHRVFSDLKQQGTIRVNGQ-VTTPAVTLAVGDH 55 Query: 65 VAINAEIEEEARFEPQDI-PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYY 123 VA+ E P+ +++E+ D ++++KP L V PG N T++N + Y+ Sbjct: 56 VAVTFPPETADEAVAVSHEPITVLFENRDWLVVDKPAGLNVVPGPANRTDTLVNRIKGYW 115 Query: 124 -PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAG 182 A+ I+ RLD+ T+G++ VA+ A + + +I + Y AV G + A Sbjct: 116 EAEHAENLVPHILTRLDRFTSGVVWVARHRLANSLASQLQAAHQIDKRYLAVVSGRLEAD 175 Query: 183 -GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMA 241 +D P++ PT M V P GKPA T Y + + F T + ++L TGRTHQIR H A Sbjct: 176 HAVIDAPLASDPTGYNQM-VSPTGKPARTEYWVQQRFATATVVAVKLHTGRTHQIRAHFA 234 Query: 242 HITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPI 301 + HPL+GD +Y G + +RQAL A L P + + ++ + + Sbjct: 235 SLGHPLLGDALYDG--------------PVTGINRQALQALSLTFKDPFTDEQRQFTSEL 280 Query: 302 PQDMVELIEVMRAD 315 P D LI + + Sbjct: 281 PADWQTLIHQLSEE 294 >UniRef50_Q2GEQ1 Ribosomal large subunit pseudouridine synthases, RluA family n=4 Tax=Neorickettsia RepID=Q2GEQ1_NEOSM Length = 330 Score = 306 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 110/312 (35%), Positives = 155/312 (49%), Gaps = 20/312 (6%) Query: 8 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67 V+E G RLD L P +SRS IK I R+ GK+ +P +V+ GE+ + Sbjct: 3 KCIVAECDAGNRLDVFLHRCLPFFSRSFIKHCIKGSRIESEGKIQLEPSRRVVVGEEYHL 62 Query: 68 NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127 E PLD+ YED+ +++I KP LVVHPG GN + T++N L H+YP Sbjct: 63 FDLPLERKPRHAFVQPLDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEK 122 Query: 128 ----DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA-G 182 D R GIVHRLDKDT G ++VAKT PA L + ++ I REY A+ + Sbjct: 123 LSSLDSSRPGIVHRLDKDTAGFLIVAKTNPAHLSLSQMIKEGVIRREYLALVHSVPASLS 182 Query: 183 GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQIRVHM 240 G + +PI R +R M GKPA+T+Y ++ R + + RL +GRTHQIR+HM Sbjct: 183 GEIKKPIKR--GQRKMMIGRCSGKPALTYYGVIARTVDRKCSLVHCRLGSGRTHQIRLHM 240 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 I P+VGD +YG A AL A L+ HP + M ++ Sbjct: 241 KSIGCPVVGDKLYGLNRDADLCA-----------PHHALWAYSLQFRHPFTRKNMAFYIE 289 Query: 301 IPQDMVELIEVM 312 + +E + Sbjct: 290 PASIIQPFLEKI 301 >UniRef50_A5VJ18 Pseudouridine synthase, RluA family n=13 Tax=Lactobacillus RepID=A5VJ18_LACRD Length = 301 Score = 306 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 90/313 (28%), Positives = 138/313 (44%), Gaps = 23/313 (7%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQ-RVLVNGKVCDKPKEKVLGGE 63 ++ ++L AL S S +K I ++ +NG V + V + Sbjct: 1 MKFNWIYDHR-TPRKLRSALK--MYGVSSSLLKVAIYHGGKMQING-VDKWAVDTVNYLD 56 Query: 64 QVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNP-DGTVLNALLH 121 +V + E + + P+DI+YED+D +I+NKP + P P +++N + Sbjct: 57 KVTLILPPETANDNVDVSEAPIDIIYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKG 116 Query: 122 YYPPIADVPRA-GIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180 YY + + RLD+DT+GL+V K A L E L++ + + Y A+ G + Sbjct: 117 YYKRQNYENQVTHVATRLDRDTSGLVVFPKHRFAHAVLDEQLKKHLVKKNYLALIKGKVP 176 Query: 181 -AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239 G +D PI R P V GK +VT Y E + +++RL TGRTHQIRVH Sbjct: 177 AEHGYIDAPIQRDPNSFVKRMVGKEGKASVTEYWRQECNVQASLIKIRLHTGRTHQIRVH 236 Query: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299 A + PL+GD +YG RQALH L Y P G + A Sbjct: 237 FASLGFPLIGDKMYG--------------EESGLIARQALHCYWLSFYSPFKGKNITVSA 282 Query: 300 PIPQDMVELIEVM 312 P+P D + + Sbjct: 283 PLPSDFKNAKDDL 295 >UniRef50_B9DS29 Pseudouridine synthase n=85 Tax=Firmicutes RepID=B9DS29_STRU0 Length = 301 Score = 306 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 145/317 (45%), Gaps = 26/317 (8%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWI-LDQRVLVNGKVCDKPKEKVLGGE 63 ++ + + L L D S+ + + +LVNG+ V G+ Sbjct: 1 MRFDFIADKRSKVKTL---LKSH--DVSKGLLAKVKYKGGNILVNGQ-EQNAIYLVDVGD 54 Query: 64 QVAINAEIE-EEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V I+ E + E PLDIVYED+ +++NKP P A + T+ N + Y Sbjct: 55 VVTIHIPDELPFEKLEAVPHPLDIVYEDDHFLVLNKPVGYASIPSAIH-SNTIANFIKAY 113 Query: 123 YPPIADVPR-AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAI--GHM 179 Y + IV RLD+DT+GLM+ AK A RL + LQ+R I + Y A+ G + Sbjct: 114 YFEQNYPNKQVHIVTRLDRDTSGLMLFAKHGYAHARLDKQLQKRSIEKRYFALVSGNGQL 173 Query: 180 TAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRV 238 G + EPI R V PMGK A T Y ++ F + ++L TGRTHQIRV Sbjct: 174 PDFGEIVEPIGRSKDSIITRTVDPMGKYAKTTYEVVARFAENVHLVDIKLHTGRTHQIRV 233 Query: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 H +HI PL+GD +YGGR +RQALH L ++P + E Sbjct: 234 HFSHIGFPLLGDDLYGGR-------------MDLGIERQALHCHFLSFFNPFTENESIHT 280 Query: 299 APIPQDMVELIEVMRAD 315 + +D +I ++ + Sbjct: 281 INLTEDFENVIIDLQKN 297 >UniRef50_C6VRD0 Pseudouridylate synthase n=4 Tax=Lactobacillus RepID=C6VRD0_LACPJ Length = 300 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 143/309 (46%), Gaps = 21/309 (6%) Query: 5 VQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR-VLVNGKVCDKPKEKVLGGE 63 ++ T ++ ++ LA+ +RS +K+ +LV+ + + GGE Sbjct: 1 MRFTW-INHETTPMKVKTLLAQH--GVTRSLLKKVKFHGGAILVDERPV-LAIHMLTGGE 56 Query: 64 QVAINAEIEEEAR-FEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHY 122 V + E +P+DI+YED D +I+NKP + P PD T+ N + Y Sbjct: 57 TVTMVTPAEIGNDHLGVSTLPIDILYEDRDYLIVNKPAGVASVPAHALPDNTLANRVKGY 116 Query: 123 YPPIA-DVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT- 180 Y D I RLD+DT+G+++ AK A + + L+ + + Y AV G +T Sbjct: 117 YQAAHYDNEVVHITTRLDRDTSGIVLFAKHHFAHSIIDHQLKAHAMRKMYLAVVSGELTT 176 Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240 G +D PI R P GKP++T Y +++ T +R+RL TGRTHQIRVH Sbjct: 177 DHGWLDAPIGRAADSFIKRTTRPDGKPSLTEYWVVKRLCNMTVVRVRLHTGRTHQIRVHF 236 Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 A HPL+GD +YGG P RQALH L P + AP Sbjct: 237 AASGHPLIGDALYGGPRDP-------------WIQRQALHCMRLEFDDPFISQTLTTFAP 283 Query: 301 IPQDMVELI 309 +P D+ LI Sbjct: 284 LPADLNRLI 292 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.187 0.672 Lambda K H 0.267 0.0574 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,838,175,275 Number of Sequences: 3077464 Number of extensions: 174245569 Number of successful extensions: 390050 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3613 Number of HSP's successfully gapped in prelim test: 1437 Number of HSP's that attempted gapping in prelim test: 372297 Number of HSP's gapped (non-prelim): 5859 length of query: 326 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 197 effective length of database: 643,403,500 effective search space: 126750489500 effective search space used: 126750489500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 94 (40.3 bits)