Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	Q	R	V	Q	L	T	A	T	V	S	E	N	Q	L	G	Q	R	L	D	Q	A	L	A	E	M	F	P	D	Y	S	R	S	R	I	K	E	W	I	L	D	Q	R	V	L	V	N	G	K	V	C	D	K	P	K	E	K	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	G	E	Q	V	A	I	N	A	E	I	E	E	E	A	R	F	E	P	Q	D	I	P	L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L
Secondary structure
SS confidence
Disorder													?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	M	V	V	A	K	T	V	P	A	Q	T	R	L	V	E	S	L	Q	R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	M	T
Secondary structure
SS confidence
Disorder																																													?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	H	M	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	M	E	H	F	R	V	H	T	R	L	R	L	R	L	E	T	G	R	T	H	Q	I	R	V	H	M
Secondary structure
SS confidence
Disorder														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	H	I	T	H	P	L	V	G	D	P	V	Y	G	G	R	P	R	P	P	K	G	A	S	E	A	F	I	S	T	L	R	K	F	D	R	Q	A	L	H	A	T	M	L	R	L	Y	H	P	I	S	G	I	E	M	E	W	H	A	P
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Sequence		I	P	Q	D	M	V	E	L	I	E	V	M	R	A	D	F	E	E	H	K	D	E	V	D	W	L
Secondary structure
SS confidence
Disorder																		?	?		?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qyu chain A Region: 77 - 326 Aligned: 250 Modelled: 250 Confidence: 100.0% Identity: 96% PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud Phyre2 PDB 1v9f chain A Region: 77 - 326 Aligned: 250 Modelled: 250 Confidence: 100.0% Identity: 100% PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli Phyre2 PDB 1v9f chain A Region: 77 - 326 Aligned: 250 Modelled: 250 Confidence: 100.0% Identity: 100% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 1v9k chain A Region: 86 - 313 Aligned: 219 Modelled: 226 Confidence: 100.0% Identity: 31% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 2i82 chain D Region: 74 - 302 Aligned: 212 Modelled: 229 Confidence: 100.0% Identity: 35% PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Phyre2 PDB 1ksk chain A Region: 16 - 255 Aligned: 207 Modelled: 214 Confidence: 100.0% Identity: 24% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua Phyre2 PDB 1vio chain A Region: 18 - 255 Aligned: 203 Modelled: 236 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Phyre2 PDB 3dh3 chain C Region: 15 - 255 Aligned: 205 Modelled: 241 Confidence: 100.0% Identity: 21% PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Phyre2 PDB 2oml chain A Region: 89 - 255 Aligned: 157 Modelled: 167 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue Phyre2 PDB 2olw chain B Region: 91 - 255 Aligned: 155 Modelled: 165 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue Phyre2 PDB 1ksk chain A domain 4 Region: 91 - 253 Aligned: 144 Modelled: 163 Confidence: 100.0% Identity: 22% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 1vio chain A domain 1 Region: 89 - 255 Aligned: 146 Modelled: 167 Confidence: 100.0% Identity: 21% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 2gml chain A Region: 90 - 253 Aligned: 141 Modelled: 164 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf Phyre2 PDB 2k6p chain A Region: 18 - 100 Aligned: 82 Modelled: 83 Confidence: 99.5% Identity: 18% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 Phyre2 PDB 3bbn chain D Region: 18 - 120 Aligned: 102 Modelled: 103 Confidence: 99.1% Identity: 19% PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 1dm9 chain A Region: 16 - 92 Aligned: 76 Modelled: 77 Confidence: 99.0% Identity: 21% PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd Phyre2 PDB 1dm9 chain A Region: 16 - 92 Aligned: 76 Modelled: 77 Confidence: 99.0% Identity: 21% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Heat shock protein 15 kD Phyre2 PDB 1vio chain A domain 2 Region: 18 - 73 Aligned: 55 Modelled: 56 Confidence: 98.9% Identity: 22% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Pseudouridine synthase RsuA N-terminal domain Phyre2 PDB 1p9k chain A Region: 1 - 73 Aligned: 72 Modelled: 73 Confidence: 98.6% Identity: 24% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: YbcJ-like Phyre2 PDB 1c06 chain A Region: 18 - 100 Aligned: 83 Modelled: 83 Confidence: 98.6% Identity: 18% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 1 c1qyuA_ 2 c1v9fA_ 3 d1v9fa_ 4 d1v9ka_ 5 c2i82D_ 6 c1kskA_ 7 c1vioA_ 8 c3dh3C_ 9 c2omlA_ 10 c2olwB_ 11 d1kska4 12 d1vioa1 13 c2gmlA_ 14 c2k6pA_ 15 c3bbnD_ 16 c1dm9A_ 17 d1dm9a_ 18 d1vioa2 19 d1p9ka_ 20 d1c06a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qyuA_ 100.0 96 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 2 c1v9fA_ 100.0 100 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 3 d1v9fa_ 100.0 100 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 4 d1v9ka_ 100.0 31 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 5 c2i82D_ 100.0 35 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 6 c1kskA_ 100.0 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 7 c1vioA_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 8 c3dh3C_ 100.0 21 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 9 c2omlA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 10 c2olwB_ 100.0 22 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 11 d1kska4 100.0 22 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 12 d1vioa1 100.0 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 13 c2gmlA_ 100.0 18 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 14 c2k6pA_ 99.5 18 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 15 c3bbnD_ 99.1 19 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 16 c1dm9A_ 99.0 21 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 17 d1dm9a_ 99.0 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 18 d1vioa2 98.9 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 19 d1p9ka_ 98.6 24 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 20 d1c06a_ 98.6 18 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 21 d2uubd1 not modelled 98.5 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 22 c2cqjA_ not modelled 98.3 20 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 23 d2gy9d1 not modelled 98.2 24 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 24 c3hp7A_ not modelled 97.7 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 25 d1k8wa5 not modelled 97.6 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 26 d2apoa2 not modelled 97.5 16 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 27 c2ey4A_ not modelled 97.5 26 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 28 d2ey4a2 not modelled 97.4 25 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 29 d1r3ea2 not modelled 97.4 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 30 c1s1hD_ not modelled 97.4 13 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 31 d1sgva2 not modelled 97.4 24 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 32 d1kska3 not modelled 97.3 29 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 33 c3uaiA_ not modelled 97.3 13 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 34 c2xzmD_ not modelled 97.2 13 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 35 c2apoA_ not modelled 97.1 21 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 36 c1k8wA_ not modelled 96.9 20 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 37 c1sgvA_ not modelled 96.9 24 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 38 d1h3fa2 not modelled 96.7 12 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 39 c3kbgA_ not modelled 96.0 18 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 40 c2xzmW_ not modelled 96.0 22 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 41 d1jh3a_ not modelled 95.9 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 42 c3iz6D_ not modelled 95.8 14 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 43 c3izbD_ not modelled 95.5 14 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 44 c1h3eA_ not modelled 95.2 11 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 45 c1ze2B_ not modelled 95.0 17 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 46 c2janD_ not modelled 94.3 15 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 47 c3iz6C_ not modelled 88.3 14 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 48 d1vjka_ not modelled 82.4 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 49 c2qieB_ not modelled 82.0 18 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 50 c2qjlA_ not modelled 74.0 9 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 51 c3po0A_ not modelled 73.9 19 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 52 c2g1eA_ not modelled 73.6 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 53 c3rpfC_ not modelled 73.1 20 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 54 d1wgka_ not modelled 70.9 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 55 c2kmmA_ not modelled 66.6 23 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 56 d1fm0d_ not modelled 64.9 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 57 d1xo3a_ not modelled 64.0 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 58 d1t3qa2 not modelled 60.7 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 59 d2g1la1 not modelled 58.8 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 60 c3hvzB_ not modelled 57.6 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 61 c3dwmA_ not modelled 52.6 19 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 62 c2jqlA_ not modelled 52.3 15 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 63 c1v8cA_ not modelled 52.2 16 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 64 d1tkea1 not modelled 50.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 65 c2eh0A_ not modelled 48.6 24 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 66 c1n60D_ not modelled 46.3 10 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 67 c2k9xA_ not modelled 45.6 17 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 68 d1n62a2 not modelled 45.5 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 69 d1rwsa_ not modelled 43.0 33 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 70 d1v8ca1 not modelled 42.3 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 71 c3fm8A_ not modelled 41.7 20 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 72 d1nyra2 not modelled 32.6 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 73 c2l52A_ not modelled 32.3 15 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 74 d1wlna1 not modelled 30.3 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 75 c2zodB_ not modelled 29.2 14 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 76 c2zauB_ not modelled 28.4 18 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of an n-terminally truncated2 selenophosphate synthetase from aquifex aeolicus 77 d1zud21 not modelled 27.7 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 78 d1wxqa2 not modelled 27.5 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 79 d2affa1 not modelled 24.6 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 80 d2ff4a3 not modelled 24.1 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 81 d2zoda2 not modelled 23.5 14 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 82 d1gr0a1 not modelled 22.9 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 83 c2hj1A_ not modelled 22.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 84 d2hj1a1 not modelled 22.3 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 85 c1wwtA_ not modelled 21.8 17 PDB header:ligase Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase 86 d1lgpa_ not modelled 21.3 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 87 d1vjpa1 not modelled 20.7 6 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 88 d2fcja1 not modelled 20.2 17 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 89 c1uheA_ not modelled 19.4 28 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 90 c3poaA_ not modelled 19.0 13 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 91 c2kklA_ not modelled 18.1 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 92 c3hx1B_ not modelled 17.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 93 d1ryja_ not modelled 16.5 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 94 c1r21A_ not modelled 16.4 24 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 95 c1u1iC_ not modelled 16.4 9 PDB header:isomerase Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase; PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus 96 d1wm3a_ not modelled 15.7 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 97 c2c45F_ not modelled 15.5 20 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 98 c3plxB_ not modelled 15.2 20 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 99 d2hzab1 not modelled 15.1 23 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0