BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (422 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID... 882 0.0 UniRef50_Q8RNE6 UmuC protein (Fragment) n=6 Tax=Proteobacteria R... 462 e-128 UniRef50_P07375 Protein mucB n=137 Tax=root RepID=MUCB_ECOLX 456 e-127 UniRef50_A1U8F5 DNA-directed DNA polymerase n=6 Tax=Gammaproteob... 416 e-115 UniRef50_Q0VP68 DNA-damage-inducible protein n=4 Tax=Proteobacte... 390 e-107 UniRef50_Q19NE6 UV protection and repair protein n=9 Tax=Enterob... 382 e-105 UniRef50_Q48B37 RulB protein n=30 Tax=Pseudomonas RepID=Q48B37_P... 382 e-104 UniRef50_C6XDV2 DNA-directed DNA polymerase n=2 Tax=Methylovorus... 376 e-103 UniRef50_A4SWQ9 DNA-directed DNA polymerase n=13 Tax=cellular or... 376 e-103 UniRef50_D0KZ56 DNA-directed DNA polymerase n=12 Tax=root RepID=... 376 e-102 UniRef50_B7JBK8 UmuC protein n=1 Tax=Acidithiobacillus ferrooxid... 375 e-102 UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_S... 373 e-102 UniRef50_Q31HB8 ImpB/mucB/samB family protein n=1 Tax=Thiomicros... 368 e-100 UniRef50_B4WV07 ImpB/MucB/SamB family n=6 Tax=Synechococcus sp. ... 363 7e-99 UniRef50_B0VH44 Protein umuC n=1 Tax=Candidatus Cloacamonas acid... 362 2e-98 UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcu... 358 2e-97 UniRef50_Q5ZUT9 SOS mutagenesis and repair UmuC protein n=12 Tax... 355 1e-96 UniRef50_C6XEM8 DNA-directed DNA polymerase n=1 Tax=Methylovorus... 348 2e-94 UniRef50_D0J481 DNA-directed DNA polymerase n=4 Tax=cellular org... 347 3e-94 UniRef50_B4YK21 TumC n=1 Tax=Tetrathiobacter kashmirensis RepID=... 343 5e-93 UniRef50_Q0ACU7 DNA-directed DNA polymerase n=3 Tax=Nitrosomonas... 340 5e-92 UniRef50_B5JVF1 UmuC protein n=1 Tax=gamma proteobacterium HTCC5... 339 1e-91 UniRef50_A9E9W4 Nucleotidyltransferase/DNA polymerase involved i... 338 2e-91 UniRef50_Q11V03 Nucleotidyltransferase/DNA polymerase involved i... 337 6e-91 UniRef50_C3X802 DNA-directed DNA polymerase n=1 Tax=Oxalobacter ... 335 2e-90 UniRef50_A6ET82 Nucleotidyltransferase/DNA polymerase involved i... 335 2e-90 UniRef50_Q4FMY4 UmuC n=6 Tax=Bacteria RepID=Q4FMY4_PELUB 333 5e-90 UniRef50_Q6R286 SOS inducible DNA polymerase (Fragment) n=15 Tax... 332 1e-89 UniRef50_A5FIG7 DNA-directed DNA polymerase n=10 Tax=cellular or... 332 2e-89 UniRef50_Q8VMP6 RuvB protein n=4 Tax=Pseudomonas RepID=Q8VMP6_PSEPU 330 5e-89 UniRef50_C7RB82 DNA-directed DNA polymerase n=1 Tax=Kangiella ko... 328 3e-88 UniRef50_C7I5S1 DNA-directed DNA polymerase n=2 Tax=Proteobacter... 327 4e-88 UniRef50_D0RPK3 Protein UmuC n=1 Tax=alpha proteobacterium HIMB1... 325 3e-87 UniRef50_C6BX75 DNA-directed DNA polymerase n=1 Tax=Desulfovibri... 323 1e-86 UniRef50_A8ZLK7 DNA polymerase V, putative n=4 Tax=Cyanobacteria... 322 1e-86 UniRef50_Q1QXT4 DNA-directed DNA polymerase n=1 Tax=Chromohaloba... 322 2e-86 UniRef50_A5Y0S5 UmuC-like protein n=9 Tax=Proteobacteria RepID=A... 322 2e-86 UniRef50_A5FU54 UMUC domain protein DNA-repair protein n=2 Tax=A... 322 2e-86 UniRef50_A1BFA1 DNA-directed DNA polymerase n=7 Tax=Chlorobiacea... 320 9e-86 UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM... 320 9e-86 UniRef50_C6M791 Protein UmuC n=2 Tax=Neisseria RepID=C6M791_NEISI 319 1e-85 UniRef50_D1PC12 UmuC protein n=2 Tax=Bacteria RepID=D1PC12_9BACT 318 3e-85 UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved i... 317 4e-85 UniRef50_A6UXE7 Ultraviolet light resistance protein B n=1 Tax=P... 316 9e-85 UniRef50_Q2W5K5 Nucleotidyltransferase/DNA polymerase involved i... 315 2e-84 UniRef50_A5GPY7 Bacterial UmuC protein homolog (SOS-regulated pr... 314 3e-84 UniRef50_Q3B3L9 DNA-directed DNA polymerase n=2 Tax=Chlorobium/P... 314 5e-84 UniRef50_Q15TC7 DNA-directed DNA polymerase n=25 Tax=Proteobacte... 313 6e-84 UniRef50_D2QVG5 DNA-directed DNA polymerase n=1 Tax=Spirosoma li... 312 1e-83 UniRef50_B7LX10 Protein impB n=4 Tax=Enterobacteriaceae RepID=B7... 311 2e-83 UniRef50_B9Z6P1 DNA-directed DNA polymerase n=2 Tax=Proteobacter... 309 1e-82 UniRef50_A9W7Y3 DNA-directed DNA polymerase n=10 Tax=Rhizobiales... 307 5e-82 UniRef50_A6WU94 DNA-directed DNA polymerase n=28 Tax=Gammaproteo... 306 1e-81 UniRef50_C8X192 DNA-directed DNA polymerase n=2 Tax=Deltaproteob... 306 1e-81 UniRef50_C0VGI8 Nucleotidyltransferase/DNA polymerase n=4 Tax=Ac... 305 3e-81 UniRef50_Q30X29 DNA-directed DNA polymerase n=8 Tax=Proteobacter... 304 3e-81 UniRef50_Q2P505 Polymerase V subunit n=4 Tax=Xanthomonadaceae Re... 301 3e-80 UniRef50_B8DRU5 DNA-directed DNA polymerase n=13 Tax=Proteobacte... 301 3e-80 UniRef50_B6BWB3 DNA-directed DNA polymerase n=1 Tax=beta proteob... 299 1e-79 UniRef50_Q3AKE9 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 297 5e-79 UniRef50_UPI0000E87FBE DNA repair protein n=1 Tax=Methylophilale... 295 2e-78 UniRef50_B2FJL0 Putative UV protection and mutation protein n=1 ... 295 3e-78 UniRef50_D1VXB9 Putative DNA polymerase V subunit UmuC n=1 Tax=P... 294 5e-78 UniRef50_D1R5W7 Putative uncharacterized protein n=1 Tax=Parachl... 294 5e-78 UniRef50_D0Z2K2 Error-prone repair protein UmuC n=5 Tax=Photobac... 293 1e-77 UniRef50_C6NU08 Error-prone repair protein UmuC n=1 Tax=Acidithi... 291 4e-77 UniRef50_UPI0001C34BBE DNA-directed DNA polymerase n=3 Tax=Neiss... 289 1e-76 UniRef50_C9LED2 UmuC protein n=1 Tax=Prevotella tannerae ATCC 51... 286 1e-75 UniRef50_B3E0C4 Nucleotidyltransferase/DNA polymerase UmuC n=1 T... 281 2e-74 UniRef50_A0L3I2 DNA-directed DNA polymerase n=1 Tax=Shewanella s... 280 1e-73 UniRef50_A6DHJ1 Putative uncharacterized protein n=1 Tax=Lentisp... 278 3e-73 UniRef50_C0LIJ7 Putative DNA polymerase V subunit UmuC n=1 Tax=A... 275 2e-72 UniRef50_A0K1P6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 274 4e-72 UniRef50_Q2TTW3 UmuC n=8 Tax=Enterobacteriaceae RepID=Q2TTW3_ECOLX 273 8e-72 UniRef50_C2BWE4 DNA-directed DNA polymerase n=1 Tax=Mobiluncus c... 273 1e-71 UniRef50_Q1QXW8 DNA-directed DNA polymerase n=1 Tax=Chromohaloba... 271 3e-71 UniRef50_Q2YI99 Nucleotidyltransferase/DNA polymerase n=3 Tax=Ba... 270 6e-71 UniRef50_Q2RYM0 UmuC protein n=2 Tax=Salinibacter ruber DSM 1385... 270 7e-71 UniRef50_Q31B23 DNA-directed DNA polymerase n=7 Tax=Prochlorococ... 268 2e-70 UniRef50_A3M2E2 DNA-directed DNA polymerase n=8 Tax=Acinetobacte... 265 3e-69 UniRef50_C0YV48 Probable RumB/ImpB like DNA repair protein n=1 T... 261 5e-68 UniRef50_Q0KKM4 Putative UV protection protein n=1 Tax=Plasmid p... 255 2e-66 UniRef50_Q6MCK0 Putative SOS mutagenesis and repair protein UmuC... 255 3e-66 UniRef50_B2I3H3 Nucleotidyltransferase/DNA polymerase n=12 Tax=A... 253 8e-66 UniRef50_Q46L62 DNA-directed DNA polymerase n=2 Tax=Prochlorococ... 246 1e-63 UniRef50_A6EED8 Nucleotidyltransferase/DNA polymerase involved i... 243 7e-63 UniRef50_B5TTR9 RumB n=6 Tax=Bacteria RepID=B5TTR9_9BACT 225 2e-57 UniRef50_C9M6E1 UmuC protein n=1 Tax=Jonquetella anthropi E3_33 ... 214 6e-54 UniRef50_UPI0000F2F527 DNA-directed DNA polymerase n=1 Tax=Acine... 208 3e-52 UniRef50_Q7NUT5 UmuC protein n=1 Tax=Chromobacterium violaceum R... 190 8e-47 UniRef50_B2I405 Nucleotidyltransferase/DNA polymerase involved i... 175 2e-42 UniRef50_D2LKT9 Nucleotidyltransferase/DNA polymerase involved i... 156 1e-36 UniRef50_D0SQN6 Predicted protein n=1 Tax=Acinetobacter junii SH... 150 6e-35 UniRef50_Q0EYF1 Putative uncharacterized protein n=1 Tax=Maripro... 148 4e-34 UniRef50_C7CFB9 Putative DNA-directed DNA polymerase n=1 Tax=Met... 142 3e-32 UniRef50_D1ZXB0 C-terminus not complete (Fragment) n=1 Tax=Sorda... 140 1e-31 UniRef50_Q2BYP9 Nucleotidyltransferase/DNA polymerase involved i... 138 3e-31 UniRef50_D2R017 DNA-directed DNA polymerase n=2 Tax=Planctomycet... 137 7e-31 UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=... 137 9e-31 UniRef50_A8GJ69 UV protection protein n=1 Tax=Serratia proteamac... 137 1e-30 UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaero... 128 5e-28 UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomyceta... 127 8e-28 UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermo... 127 1e-27 UniRef50_C9Y1T2 Putative uncharacterized protein n=1 Tax=Cronoba... 126 1e-27 UniRef50_C3KFQ7 Putative ultraviolet light resistance protein B ... 125 3e-27 UniRef50_C7CNB5 Putative uncharacterized protein n=1 Tax=Methylo... 125 4e-27 UniRef50_B1YIX5 DNA-directed DNA polymerase n=2 Tax=Exiguobacter... 124 6e-27 UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_... 122 2e-26 UniRef50_A6C5Y5 UMUC-like DNA-repair protein n=1 Tax=Planctomyce... 122 3e-26 UniRef50_Q0F3E1 ImpB/MucB/SamB family protein n=2 Tax=Mariprofun... 121 4e-26 UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2... 121 5e-26 UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia ext... 121 5e-26 UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collins... 120 1e-25 UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 119 3e-25 UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis... 118 3e-25 UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia deni... 117 8e-25 UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 116 1e-24 UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX... 115 4e-24 UniRef50_B2I406 Nucleotidyltransferase/DNA polymerase involved i... 114 6e-24 UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter... 114 7e-24 UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomyceta... 114 7e-24 UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiale... 113 2e-23 UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibri... 112 2e-23 UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class... 111 4e-23 UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9... 111 5e-23 UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutyl... 110 7e-23 UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 110 1e-22 UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4... 110 1e-22 UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus ... 109 1e-22 UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiale... 109 2e-22 UniRef50_Q6KZW2 DNA polymerase IV n=1 Tax=Picrophilus torridus R... 109 2e-22 UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica... 108 3e-22 UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteob... 108 3e-22 UniRef50_C1F7T1 ImpB/MucB/SamB family protein n=1 Tax=Acidobacte... 108 3e-22 UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42... 108 4e-22 UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO... 108 4e-22 UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 108 4e-22 UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_... 107 7e-22 UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteri... 107 8e-22 UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alke... 107 9e-22 UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 107 1e-21 UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral t... 106 2e-21 UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_... 105 3e-21 UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales... 104 5e-21 UniRef50_UPI0001913C3A DNA polymerase V subunit UmuC n=1 Tax=Sal... 104 6e-21 UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiop... 104 6e-21 UniRef50_B3PM57 Pol_IV_kappa DNA polymerase n=1 Tax=Mycoplasma a... 104 6e-21 UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomyceta... 104 6e-21 UniRef50_C1I721 DNA-damage repair protein n=1 Tax=Clostridium sp... 104 7e-21 UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria R... 103 9e-21 UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia R... 103 9e-21 UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimal... 103 1e-20 UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter... 103 1e-20 UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DP... 102 2e-20 UniRef50_C7I020 DNA-directed DNA polymerase n=1 Tax=Thiomonas in... 102 3e-20 UniRef50_P63988 DNA polymerase IV 2 n=20 Tax=Corynebacterineae R... 102 3e-20 UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_... 102 3e-20 UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostri... 102 3e-20 UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium... 102 3e-20 UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdema... 102 4e-20 UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdema... 102 4e-20 UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia R... 101 4e-20 UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=D... 101 5e-20 UniRef50_Q6F1D8 DNA polymerase IV (PolIV) n=1 Tax=Mesoplasma flo... 101 6e-20 UniRef50_UPI0001745AF1 DNA-directed DNA polymerase n=1 Tax=Verru... 100 7e-20 UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved i... 100 7e-20 UniRef50_C5IWL2 UV repair DNA polymerase n=21 Tax=Gammaproteobac... 100 8e-20 UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Rosebur... 100 9e-20 UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatel... 100 1e-19 UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobaci... 100 1e-19 UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomy... 100 1e-19 UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved i... 100 1e-19 UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms Re... 100 1e-19 UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales R... 100 1e-19 UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0... 100 1e-19 UniRef50_A7MP32 Putative uncharacterized protein n=1 Tax=Cronoba... 100 2e-19 UniRef50_A4TZ00 UmuC protein n=1 Tax=Magnetospirillum gryphiswal... 100 2e-19 UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria Re... 99 2e-19 UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 99 2e-19 UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclass... 99 2e-19 UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealy... 99 2e-19 UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella p... 99 2e-19 UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteri... 99 3e-19 UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcu... 99 4e-19 UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalob... 99 4e-19 UniRef50_A1WWK8 Putative uncharacterized protein n=1 Tax=Halorho... 99 4e-19 UniRef50_A3TNV0 Putative uncharacterized protein n=1 Tax=Janibac... 99 4e-19 UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q... 98 4e-19 UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved i... 98 4e-19 UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class... 98 5e-19 UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium s... 98 6e-19 UniRef50_C5CJ42 DNA-directed DNA polymerase n=1 Tax=Kosmotoga ol... 98 8e-19 UniRef50_A9A3A9 DNA polymerase IV n=6 Tax=Thaumarchaeota RepID=D... 97 9e-19 UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A... 97 9e-19 UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli ... 97 9e-19 UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_T... 97 1e-18 UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevi... 97 1e-18 UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=V... 97 1e-18 UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=u... 97 1e-18 UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacte... 97 1e-18 UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 154... 97 1e-18 UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxoba... 97 1e-18 UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostri... 97 1e-18 UniRef50_A9MHU5 Putative uncharacterized protein n=1 Tax=Salmone... 96 2e-18 UniRef50_B5Y6A2 DNA-directed DNA polymerase n=1 Tax=Coprothermob... 96 2e-18 UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobac... 96 2e-18 UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 96 2e-18 UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus... 96 2e-18 UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomyceta... 96 2e-18 UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax... 96 3e-18 UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 96 3e-18 UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 96 3e-18 UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_H... 96 3e-18 UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerof... 96 3e-18 UniRef50_D1J7R2 DNA-damage repair protein MucB n=1 Tax=Mycoplasm... 96 4e-18 UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidete... 95 4e-18 UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_S... 95 5e-18 UniRef50_A0QHM7 DNA polymerase IV 1 n=8 Tax=Corynebacterineae Re... 95 5e-18 UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella c... 95 5e-18 UniRef50_Q3BNM7 ImpB/MucB/SamB family protein (N-terminal) n=8 T... 95 5e-18 UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved i... 95 6e-18 UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae b... 95 6e-18 UniRef50_A1SN18 DNA-directed DNA polymerase n=13 Tax=Actinomycet... 95 6e-18 UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacte... 94 9e-18 UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2... 94 9e-18 UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii... 94 1e-17 UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospiri... 94 1e-17 UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttle... 94 1e-17 UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteri... 93 2e-17 UniRef50_A4YEC1 DNA polymerase IV n=18 Tax=Sulfolobaceae RepID=D... 93 2e-17 UniRef50_D2LRT2 DNA-directed DNA polymerase n=3 Tax=Bacillus Rep... 93 2e-17 UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicro... 93 2e-17 UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranu... 93 2e-17 UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteri... 93 2e-17 UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 92 3e-17 UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_L... 92 3e-17 UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=... 92 3e-17 UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus... 92 3e-17 UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=... 92 4e-17 UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2... 92 4e-17 UniRef50_Q98R22 DNA-DAMAGE REPAIR PROTEIN MUCB n=1 Tax=Mycoplasm... 92 5e-17 UniRef50_D2P394 DNA polymerase V n=7 Tax=Listeria RepID=D2P394_L... 91 6e-17 UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved i... 91 7e-17 UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothri... 91 8e-17 UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collins... 91 8e-17 UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_L... 91 8e-17 UniRef50_C1XR91 Nucleotidyltransferase/DNA polymerase involved i... 91 9e-17 UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaprote... 91 1e-16 UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae Rep... 91 1e-16 UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=... 90 1e-16 >UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID=UMUC_ECOLI Length = 422 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/422 (100%), Positives = 422/422 (100%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF Sbjct: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN Sbjct: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL Sbjct: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR Sbjct: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 Query: 421 VK 422 VK Sbjct: 421 VK 422 >UniRef50_Q8RNE6 UmuC protein (Fragment) n=6 Tax=Proteobacteria RepID=Q8RNE6_ECOLX Length = 225 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/225 (98%), Positives = 224/225 (99%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV NCRDLTDFG Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVHNCRDLTDFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIRATVLQRTHLTVGVGIAQTKTLAKLAN+AAKKWQRQTGGVVDLSNLERQRKLMSALP Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANYAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERT 225 VD+VWGIGRRISKKLDAMGIKTVLDLAD+DIRFIRKHFNVVLERT Sbjct: 181 VDEVWGIGRRISKKLDAMGIKTVLDLADSDIRFIRKHFNVVLERT 225 >UniRef50_P07375 Protein mucB n=137 Tax=root RepID=MUCB_ECOLX Length = 420 Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust. Identities = 235/413 (56%), Positives = 280/413 (67%), Gaps = 4/413 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL DVN YASCE FRPDL + V VLSNNDG ++ARN AK G+KMGDP+FK + Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R + FSSNY LYA MS R + +E L+ VE YSIDE F D G+ L FG Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R V + T L GVGIA+TKTLAKL NHAAK W TGGVV L + R +KLMS LP Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWP-ATGGVVALDDGARLKKLMSILP 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+G R K L MGIKTVLDLA D R IRK F VVLERTVRELRGE C LEE Sbjct: 180 VAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEEN 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P KQ+I+ SRSFG+R+ M+QA+ +AARAAEKLR+E QYCR IS FI+TSP+++ Sbjct: 240 PPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSVR 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + Y N A+ KL TQDSR II AA ++L IW+ Y KAGVML D FS AQL+L Sbjct: 300 DTQYANQATEKLTVATQDSRTIIQAA-QALARIWREDIAYAKAGVMLAD-FSGKEAQLDL 357 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTT 413 FD P GSE LM V+D +N + G+ L+FAGQGI + M+R MLSP YTT Sbjct: 358 FDSATPSAGSEALMAVLDGIN-RRGKNQLFFAGQGIDNSFAMRRQMLSPDYTT 409 >UniRef50_A1U8F5 DNA-directed DNA polymerase n=6 Tax=Gammaproteobacteria RepID=A1U8F5_MARAV Length = 430 Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/420 (50%), Positives = 285/420 (67%), Gaps = 4/420 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FALCD+N+FYASCE +F P G+PVVV SNNDGC +AR+ EAKALG+KMG P F+ ++ Sbjct: 8 VFALCDMNSFYASCEQLFNPAFRGRPVVVASNNDGCAVARSPEAKALGIKMGQPIFELRE 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + G++ SSNY LY DMS+R M L E +PRV YSIDEAF DLTG+ + DFG Sbjct: 68 YVEKHGLIVCSSNYALYGDMSHRFMLALAECAPRVMPYSIDEAFLDLTGIDSVVSYLDFG 127 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++ V T L + VGIA + TLAKLANHAAK + T GVVDL++ +RQR+LM P Sbjct: 128 HHVKELVRIWTGLPICVGIAPSPTLAKLANHAAKHYP-ATRGVVDLTDRDRQRRLMHLTP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ-LEE 239 V++VWGIGR++SK+LDA+GIKT LDLAD+D ++IR HF+VV+ERTVREL G PC L E Sbjct: 187 VEEVWGIGRKLSKRLDALGIKTALDLADSDPKWIRDHFSVVVERTVRELNGIPCHSDLLE 246 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 AP KQ+I+CS+SFG +TD SM AI ++A+RA+EKLR E++ C +++ F+ TS F Sbjct: 247 VAPAKQQILCSKSFGAPVTDLNSMLAAITAHASRASEKLRRENRDCGYLAAFMSTSRFRT 306 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +Y N + L PT D+R+I+ A ++W+ G+RY KAG++L DF G Q + Sbjct: 307 GS-HYANQQGITLPFPTSDTREIVRHAVSIARSLWREGYRYNKAGIVLTDFRVPGACQSD 365 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ-GIQQQWQMKRAMLSPRYTTRSSDL 418 F + +LM +D +N+ G+ T+ F Q Q WQM+R LSP YTTR +D+ Sbjct: 366 FFSQVEDDERNRKLMRTLDKINSIAGKNTIQFGRQIHKNQSWQMRRENLSPAYTTRWADI 425 >UniRef50_Q0VP68 DNA-damage-inducible protein n=4 Tax=Proteobacteria RepID=Q0VP68_ALCBS Length = 428 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 280/432 (64%), Gaps = 14/432 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FYA+CE +FRPDL G+PVVVLSNNDGC++A +AEAKALGVK G P F+ D Sbjct: 1 MFALVDCNSFYAACERLFRPDLQGRPVVVLSNNDGCIVAGSAEAKALGVKTGMPLFQAHD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R V FSSNY LY D+S RVM+TLE L+PRVE YSIDEAF D++ ++ +L Sbjct: 61 LIRGHKVAVFSSNYALYGDISQRVMATLETLAPRVEAYSIDEAFLDVSLMKTA-ELQPLA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +IRA + + + V VG+A TK LAKLANHAAK++ TGGVV LS+ R+ KL+S P Sbjct: 120 LQIRARIDRWVGVPVCVGVAPTKVLAKLANHAAKRYP-ATGGVVVLSDPLRRDKLLSLTP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + VWG+GRR+ + +A+GI T LDLA D+ IR+ F+VV ER VREL GEPCL L+ Sbjct: 179 ISQVWGVGRRLRGRFEALGINTALDLARADVGMIRQRFSVVQERLVRELNGEPCLSLDTQ 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q++I SRSFGE + P +RQA+ + +RA E LR E Y ++ +++T+P Sbjct: 239 PSPRQQVIYSRSFGEPVAALPPLRQALSDFVSRAMESLRKEGLYAGRVTVYLRTAPMGKP 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + ++ S L T D+R ++ A L +W G+RY KAGV+L D + Q L Sbjct: 299 QQLFPDTLSAVLSPATADTRLVVRQAQALLAQLWWPGYRYGKAGVILTDLRGRDQVQCGL 358 Query: 361 FDDNAP------RPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ----QQWQMKRAMLSPR 410 F + P R G E LM VMD++N + G G ++ AG+G+Q W M+RA LSP Sbjct: 359 FAEQKPAEQETGRRG-EALMAVMDSIN-QSGVGKVWLAGRGMQGNQHSTWAMRRAHLSPA 416 Query: 411 YTTRSSDLLRVK 422 YT+R SDL V+ Sbjct: 417 YTSRWSDLPVVR 428 >UniRef50_Q19NE6 UV protection and repair protein n=9 Tax=Enterobacteriaceae RepID=Q19NE6_ECOK1 Length = 419 Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/422 (47%), Positives = 275/422 (65%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+ D+N YA+ E P L KP+++ SNND VIA N AK++G+K G P FK +D Sbjct: 1 MYMHVDINGAYAAFECAMDPKLSKKPLIIASNNDSSVIAMNKLAKSVGIKRGTPIFKCRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ + SSN+ LY D SNR TLE +P+ YSIDE F L + D D+G Sbjct: 61 LIQQHRIEVRSSNFTLYEDYSNRFHETLESFAPQSSRYSIDENFMLLKNMNKIIDYEDYG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR+T+L LT GVG + TKTLAKL +A+K+W TGGVV L++ R RKL+ + Sbjct: 121 RLIRSTLLHNLSLTCGVGCSSTKTLAKLCTYASKRWA-ATGGVVVLTDQARIRKLLGLIS 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++WGIG++IS++L A GI T D ++D+RF+RK F V +ERT REL GEPC +L E Sbjct: 180 TREIWGIGQKISERLSAFGIITAGDFYNSDVRFLRKSFGVEIERTWRELHGEPCFRLHES 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +Q+II SRSFG+R+ + + +A+ + ARAAE+LR + + R I+ FI++S +A Sbjct: 240 PPVRQQIIVSRSFGQRLNEIGKLHEAVSFFTARAAEQLRKDGSWTRQITVFIQSSNYAQG 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y N ++ LT TQD+RD+++AA L+ I++ G Y KAGVML + G QL+L Sbjct: 300 ENRYSN-CGIEPLTATQDTRDLVDAAMTILNRIYKPGIAYAKAGVMLSA-MTDGTEQLSL 357 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FD+ RPGS+ LM VMD N KE RG L+ G+GIQQ ++MK+AMLSPRYTTR +LL Sbjct: 358 FDERPARPGSQALMKVMDRFN-KEKRGALFLLGEGIQQDFRMKQAMLSPRYTTRWDELLV 416 Query: 421 VK 422 VK Sbjct: 417 VK 418 >UniRef50_Q48B37 RulB protein n=30 Tax=Pseudomonas RepID=Q48B37_PSE14 Length = 427 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/422 (47%), Positives = 273/422 (64%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F L D N+FYASCE VFRPDL P+VVLSNNDGCVIAR+ +AK VKMG P+F+ KD Sbjct: 8 VFGLVDCNSFYASCERVFRPDLAKVPIVVLSNNDGCVIARSYDAKPY-VKMGAPYFQIKD 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + RR G+ FSSN+ LY D+S RVM+ +E + P VE+YSIDEAF DL+G+ +LT+ G Sbjct: 67 VLRRHGIQSFSSNFALYGDLSQRVMAIIESMVPAVEVYSIDEAFADLSGMPG--NLTELG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR+ V + T + VGVGIA TKTLAKLANH AK+ Q TGGVVD+ + ++ ++ Sbjct: 125 RSIRSKVYRCTGIPVGVGIAPTKTLAKLANHTAKRLQAHTGGVVDICDPVKRDWVLRNTS 184 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR++ L+ M I + DLA D +RK F+VV+E+T REL G CL+L+E Sbjct: 185 VGEVWGIGRKMKAHLEGMQILSAKDLAMADPWMLRKTFSVVIEKTARELAGTACLELDEV 244 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +QEI CSR FG+R+T+ +++A+ +Y RA+EKLR++ C+ I I+T F + Sbjct: 245 EPPRQEICCSRMFGKRLTELGPIKEAVATYMMRASEKLRAQGSVCKKIRVSIRTGMFNPD 304 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y N A V+L PT D R + AT ++ I++ G RY KA V+L D G +L Sbjct: 305 EAKYANGALVQLPYPTNDVRLMTQYATEAVSRIFRPGFRYSKAEVLLMDICQPGEFTDDL 364 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F N P S++LM +D++N K GRGTL + W M+R +S YTTR L Sbjct: 365 FAVNQPV-SSDRLMAALDSINGKWGRGTLRTGSVPVTPDWGMRREQMSQSYTTRLDQLWV 423 Query: 421 VK 422 VK Sbjct: 424 VK 425 >UniRef50_C6XDV2 DNA-directed DNA polymerase n=2 Tax=Methylovorus sp. SIP3-4 RepID=C6XDV2_METSD Length = 430 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/425 (48%), Positives = 274/425 (64%), Gaps = 7/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL-GVKMGDPWFKQK 59 +FAL D N+FYASCE VFRPDL GKPVVVLSNNDGCV+A++ EAKAL + M PWF+ + Sbjct: 10 VFALADANSFYASCEKVFRPDLEGKPVVVLSNNDGCVVAQSKEAKALLKLWMCRPWFEIE 69 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 + R GVV FSSNYELYA+MSNR M+TL + SPR E+YSIDE+F ++TG+ R+LTD+ Sbjct: 70 EEALRLGVVPFSSNYELYANMSNRFMTTLRQFSPRQEVYSIDESFLEMTGIN--RNLTDY 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL-ERQ-RKLMS 177 G+EI+ TV T L + VG +KTLAKLANH AKK Q Q GV DL+ L ER+ ++ Sbjct: 128 GQEIKRTVKDWTGLPICVGFGHSKTLAKLANHCAKK-QPQWEGVCDLTALSERELEAILE 186 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPVD VWG+GRR+ L +G++ VL L D + +R F VVLERTVREL GE +++ Sbjct: 187 QLPVDTVWGVGRRLQASLATVGVENVLRLKRADPKRVRDKFGVVLERTVRELNGEVLIEM 246 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 EE P ++++ SRSFG R+ + +AI +A+ A+++LRS+ Y + FI+ SPF Sbjct: 247 EEMVPEAKQVMSSRSFGARVHQLKDLEEAISYHASNASQRLRSKGLYANAVYIFIQNSPF 306 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 E YYG S +V L PT ++ I AA L I++ G YQKAGVML + Q Sbjct: 307 DKAE-YYGPSCTVALPCPTDNTLQINKAALWLLKRIYRPGIYYQKAGVMLMGLVPKEGQQ 365 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 L + P S+ LM +D +N K +G L A +G+ + W M+R SP YT + Sbjct: 366 QELLGYSEATPKSQALMETLDRINHKYSKGALKVASEGMAKLWAMRRNFKSPNYTGDWEE 425 Query: 418 LLRVK 422 L +VK Sbjct: 426 LGKVK 430 >UniRef50_A4SWQ9 DNA-directed DNA polymerase n=13 Tax=cellular organisms RepID=A4SWQ9_POLSQ Length = 450 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/420 (45%), Positives = 271/420 (64%), Gaps = 4/420 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FAL DVN FY SCE VF+P L P+VVLSNNDGC +AR+AE KALG+K G PWF+ ++L Sbjct: 28 FALVDVNNFYVSCERVFQPKLEDVPMVVLSNNDGCAVARSAEVKALGIKTGTPWFQMQEL 87 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDFG 120 ++ G+ +SSNY LY DMS+RV+ L +P +E+YSIDE+F + T ++ +D + G Sbjct: 88 AKKHGIQAYSSNYTLYGDMSSRVVEVLRAFTPNLEVYSIDESFLQIETVLKQYQDTVELG 147 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSA 178 R ++ V T L V VGI +KTLAK ANH AKK Q Q GV D++ + ++ + MS Sbjct: 148 RSMKEKVRDTTGLPVCVGIGASKTLAKFANHLAKKHQ-QFAGVCDVNAMPKEEFYQWMSE 206 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 V +VWGIGR+++KKL A I +V DL + +R+ + VV+ER ELRG CL+LE Sbjct: 207 TSVAEVWGIGRQLAKKLKAQNIHSVFDLLQASPQAMRQQYGVVMERLCYELRGVSCLKLE 266 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E AP KQ+II SRSFG+ +T + +++ +AARAAEKLRS++ ++ FI+T+PF Sbjct: 267 EVAPAKQQIIASRSFGKLVTKLEELAESVAMHAARAAEKLRSQNGTTGALTVFIQTNPFK 326 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 NEP + S ++ L P+ ++ + NAA + L I+Q+G RY+KAGV+L + AQ Sbjct: 327 QNEPQHHQSITIPLSDPSDNTLTLTNAALKGLKQIYQSGFRYKKAGVILNLISDKPTAQQ 386 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +LF+D + S LM +D +N++ G + A G +Q+WQM+ SP YTTR +L Sbjct: 387 SLFEDIETKGKSAHLMKAVDEINSRFGNAAIRSAAMGTKQEWQMRSGNRSPNYTTRWDEL 446 >UniRef50_D0KZ56 DNA-directed DNA polymerase n=12 Tax=root RepID=D0KZ56_HALNC Length = 439 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 205/423 (48%), Positives = 276/423 (65%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF P L +PVVVLSNNDGC +AR+AEAKALG+ MG PWF+ + Sbjct: 17 VFALVDGNNFYVSCERVFNPALEARPVVVLSNNDGCAVARSAEAKALGIAMGQPWFQIQS 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + G++ SSNYELYADMSNR+M L + SPR E+YSIDE F DL G+ DLT Sbjct: 77 MAQSHGLIALSSNYELYADMSNRMMRILADFSPRQEVYSIDECFLDLRGMDV--DLTLLA 134 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER--QRKLMSA 178 +R V Q + VG+GI ++KTLAKLANH AKK Q Q GV DL+ LE Q +LM+ Sbjct: 135 HGMRQRVAQWIGIPVGIGIGESKTLAKLANHLAKK-QPQWQGVCDLTTLEESAQDRLMAC 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 + V DVWG+GRR+ ++L+A GI T LDL D I++ F+VVL RTVREL+G CL LE Sbjct: 194 VDVGDVWGVGRRLKEQLNARGIVTALDLKRADPVIIQRQFSVVLARTVRELQGISCLPLE 253 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 +Q+II SRSFG+ + P +RQAI ++ +RAAEKLR++ + + FI+TSPF+ Sbjct: 254 SMVAPRQQIIVSRSFGKPVWYLPELRQAITAHMSRAAEKLRTQASVAQMVQVFIRTSPFS 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-AQ 357 P+Y ++ L + D+R ++ A + L I++AG+ YQK GV+L D +G A+ Sbjct: 314 -ARPFYSQGITLPLAAASDDTRLLVKIAQQGLTRIYRAGYDYQKVGVLLMDIQPKGQGAR 372 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 +LF D ++QLM +D++NA+ G+ TL AG+G Q W MKR +P YTT Sbjct: 373 TDLFHDAQHDRRTDQLMQTLDSINARMGKHTLKLAGEGFVQPWAMKRNRHTPAYTTNIRQ 432 Query: 418 LLR 420 L R Sbjct: 433 LAR 435 >UniRef50_B7JBK8 UmuC protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7JBK8_ACIF2 Length = 427 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/423 (47%), Positives = 261/423 (61%), Gaps = 6/423 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE VFRPDL G+PVVVLSNNDGCV+AR+AE KALGV MG PWF+ + L Sbjct: 3 IALVDANNFYVSCERVFRPDLEGRPVVVLSNNDGCVVARSAEVKALGVAMGTPWFQLQKL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 RR G++ SSNY LYADMSNR+M L SP E+YSIDE F DL+G R L+ G+ Sbjct: 63 ARREGIIALSSNYSLYADMSNRMMGILSTFSPIQEVYSIDECFLDLSGFAQDR-LSQLGQ 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER--QRKLMSAL 179 R V Q L VGVGIA TKTLAKLANH AKK + + GV +L QR L+ L Sbjct: 122 AARQRVRQWVGLPVGVGIAATKTLAKLANHVAKK-RPEYAGVCVWDDLPEGDQRHLLQQL 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +VWG+GR+ + +L GI+TV DL D +RK F++++ER++RELRGEPC+ + E Sbjct: 181 PVSEVWGVGRQWTTRLQETGIQTVWDLRQADPALMRKRFSILMERSIRELRGEPCIAMVE 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +QEI SRSFG +T + +AI Y RA KLR + + FI TSPF Sbjct: 241 IPPPRQEIQSSRSFGRPVTSAEELGEAISLYTVRAVYKLRRQGSVAGALRVFIHTSPFQA 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 P Y + +V L P+QD+R + A +L ++++G Y KAGV L + S Q + Sbjct: 301 RLPSYHATRTVALNRPSQDTRVFLQAGRIALADMYRSGFAYAKAGVHLLEITSADALQAD 360 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ--WQMKRAMLSPRYTTRSSD 417 LF + +LMT +D +NA+ G GTL G+Q+ W MKR SP YTTR ++ Sbjct: 361 LFLSAEEEARAHRLMTTLDRVNARFGTGTLQPGVAGLQEPRGWAMKRGNKSPAYTTRWAE 420 Query: 418 LLR 420 L R Sbjct: 421 LAR 423 >UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_SYNP6 Length = 418 Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/421 (47%), Positives = 268/421 (63%), Gaps = 10/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L G+PVVVLSNNDGCVIAR+AEAKALG+ MG P+FK KD Sbjct: 1 MFALIDCNNFYVSCERVFDPKLQGQPVVVLSNNDGCVIARSAEAKALGIPMGIPFFKVKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + FSSNY LY DMS RVM TL L P +E+YSIDEAF D +G + + L G Sbjct: 61 LISQHQIQVFSSNYALYGDMSQRVMQTLATLCPDLEVYSIDEAFLDFSGFQ-AQPLQQ-G 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + IR TV Q T + V +GIA TK LAK+AN AK Q GGV LS + Q LM+ LP Sbjct: 119 QLIRQTVGQWTGIPVSIGIAATKVLAKVANKLAK----QNGGVFVLSPSKVQAVLMT-LP 173 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V++VWGI R ++L A+ I T +L T++ +R+ FN+VLER VRELRGE CL LE Sbjct: 174 VEEVWGISSRWGQRLRALNISTAAELQATNLNLMRQQFNIVLERIVRELRGESCLPLESI 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q ++ SRSFG+ IT P ++QA+ +Y +RAAE+LRS +++ F++T+ F Sbjct: 234 VNPQQSLVVSRSFGQPITTLPELKQAVATYVSRAAEELRSRQLTTSYLTVFVRTNRF--Q 291 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y +AS LLTPT + ++ A R ++++Q G Y+KAGV+ S Q +L Sbjct: 292 ENYEAPNASQGLLTPTNHTGKLLEIALRCTESLYQPGRAYKKAGVLFQGLGSAQSIQQSL 351 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+++ G+ LM MD LN + GR +L++ G +Q W M+ SP+YTTR DL Sbjct: 352 FEESDSEKGAA-LMVTMDRLNRRYGRQSLHYGATGTRQPWAMRSDQRSPQYTTRWQDLPE 410 Query: 421 V 421 V Sbjct: 411 V 411 >UniRef50_Q31HB8 ImpB/mucB/samB family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HB8_THICR Length = 450 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/450 (45%), Positives = 283/450 (62%), Gaps = 30/450 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL------------- 47 +FAL D N+FY SC+ F P L +P VVLSNNDGCV+A NA+AKA+ Sbjct: 3 VFALVDGNSFYVSCQIAFEPALKNRPAVVLSNNDGCVVAANAKAKAIDAFLRQQKTHFGP 62 Query: 48 -GVK-------MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYS 99 G K M P+FK K + V FSSNYELYADMS+R+ S L + + EIYS Sbjct: 63 GGYKAARPESIMFQPYFKVKRYLDQINAVVFSSNYELYADMSSRMHSVLSGFAVQQEIYS 122 Query: 100 IDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQ 159 IDE+F DL+G+ + D T +G E++ TV+Q L V VG ++TLAKLANH AKK Q Sbjct: 123 IDESFLDLSGM-SLSDFTAYGEEMKRTVMQWLGLPVAVGFGSSRTLAKLANHLAKK-QPD 180 Query: 160 TGGVVDLSNLERQ--RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKH 217 V+DL+ L L+ + + DVWG+G+ +S KL+ GI + DL +D++FIRK Sbjct: 181 HQDVLDLTVLSEASLNALLKKVAIRDVWGVGKGLSAKLEMQGILSAYDLKVSDLKFIRKR 240 Query: 218 FNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEK 277 +++ LER VRELRGE CL L A + ++II SRSFG+ +T+Y M QA+ SY RAAEK Sbjct: 241 YSITLERIVRELRGESCLSLGALATSDRQIISSRSFGQPVTEYAEMEQAVASYIVRAAEK 300 Query: 278 LRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG 337 +R++H+ C+F++ I+TSPF +Y NS ++ L+ P+ S +I A R+L +IWQ+G Sbjct: 301 MRAQHKVCQFVTVSIRTSPFQNRSCFYQNSQTLPLIYPSDSSVLLIKLAKRALRSIWQSG 360 Query: 338 HRYQKAGVMLGDFFSQGVAQLNLFDDN---APRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 + YQKAGV+L +G Q++ F N + P S++LM VMD LN G+GT+ A + Sbjct: 361 YAYQKAGVILSGVTEKGAVQIDCFAPNPQYSANPKSDRLMQVMDFLNHSMGKGTVQLAAE 420 Query: 395 GIQ--QQWQMKRAMLSPRYTTRSSDLLRVK 422 G + Q WQMKR+ +S RYTTR +LL V+ Sbjct: 421 GRKNDQAWQMKRSKMSKRYTTRWDELLTVR 450 >UniRef50_B4WV07 ImpB/MucB/SamB family n=6 Tax=Synechococcus sp. PCC 7335 RepID=B4WV07_9SYNE Length = 425 Score = 363 bits (932), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 203/427 (47%), Positives = 274/427 (64%), Gaps = 10/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FALCD N FY SCE VFRP+L VLSNNDGC IAR+ + K LGV MG PW K + Sbjct: 3 IFALCDCNQFYVSCERVFRPELETHACGVLSNNDGCFIARSPQLKTLGVPMGGPWHKYRS 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + V FSSNY LY DMS RVM+ L +P +E+YSIDE F L G + DLTD+G Sbjct: 63 LCTQNNVAVFSSNYALYGDMSQRVMACLGTFTPDMEVYSIDEVFLQLDGFAHL-DLTDYG 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ V Q T + +GVGI TKTLAK+AN+ AKK R T GV +L + Q +++ + Sbjct: 122 RQMQRKVHQWTGIPIGVGIGPTKTLAKVANYVAKK--RTTSGVFNLCDRTLQDQVLPTIA 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+D+WGIGRR + KL+A+GIKT DL + R IR+ FNVV ER V ELRG CL LEE Sbjct: 180 VEDIWGIGRRWALKLNAIGIKTAADLRAAEPRTIRQVFNVVAERIVHELRGTACLGLEEI 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P K+ I+CSRSFG+ I++ + +AI +AARAA KLR + C + F++T+ F + Sbjct: 240 QP-KKNIMCSRSFGQMISEKHLLLEAIADHAARAAGKLRGQGSRCGGLQVFLQTNRFRKH 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y NS + P++DSR+II+AA + +++ G Y K GVML D Q NL Sbjct: 299 EAQYSNSCTWSFTVPSRDSREIIHAARACMAQLYRPGFEYHKCGVMLVDLAPATTVQGNL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ-----QQWQMKRAMLSPRYTTRS 415 F + S++LM +MD+LNAK GRGT+ FA QG++ + W M++ SPRYTTR Sbjct: 359 F-CSTDHEQSDELMALMDSLNAKMGRGTVRFAAQGLEKGKQRKSWGMRQQWRSPRYTTRL 417 Query: 416 SDLLRVK 422 ++++V+ Sbjct: 418 KEIVKVR 424 >UniRef50_B0VH44 Protein umuC n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH44_9BACT Length = 429 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 192/422 (45%), Positives = 257/422 (60%), Gaps = 3/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + AL D N FY SCE VF P L KPV VLSNNDGC+++R+ E K L + MG P FK + Sbjct: 11 IVALVDCNNFYVSCERVFNPKLNNKPVAVLSNNDGCIVSRSQEIKDLKIPMGAPGFKYEG 70 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ G SSNY LYADMS+RVM L SP VEIYSIDEAF L G +N RDL +FG Sbjct: 71 LIKKHGGTLLSSNYALYADMSSRVMEVLALFSPEVEIYSIDEAFLGLNGFKN-RDLENFG 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++I+ TV Q T + V VGI+QTKTLAK+ANH AK++ G + L + ER K ++ P Sbjct: 130 KKIKRTVFQWTGIPVSVGISQTKTLAKVANHFAKRYSAFQGSLCLLDD-ERITKALAKTP 188 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR+ K L I+T L L D + +FI + V +TV ELRG C+ L+E Sbjct: 189 VSEVWGIGRQYDKFLRQHKIETALQLRDAEDKFIEHYLTSVGLKTVLELRGYACIDLDEA 248 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I+ SRSFG++++ +++AI Y RAAEKLR + + F+ T+ F Sbjct: 249 PANKKSIVTSRSFGKQVSSLNDLQEAISEYVTRAAEKLRKQKSVAGLLMVFLSTNRFK-E 307 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NS S L PT + ++I A LD ++ G ++KAGVML D + L+ Sbjct: 308 GPQYNNSLSTTLFPPTAYTPELIKTALNLLDDLYLPGFEFKKAGVMLADIIPEKDVPLSF 367 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 D N ++LM MD LN G+ TL++A GI++ W+MKRA LSP YTT +DL + Sbjct: 368 MDTNYLDDKRKKLMEAMDKLNRTYGQDTLFYASSGIKKDWKMKRAKLSPHYTTHWNDLPK 427 Query: 421 VK 422 VK Sbjct: 428 VK 429 >UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9G4_MAGSM Length = 421 Score = 358 bits (919), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 198/421 (47%), Positives = 260/421 (61%), Gaps = 3/421 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +AL D N FYASCE +F+P L GKPVVVLSNNDGC IAR+ EAK LG+ MG P + + L Sbjct: 3 YALVDCNNFYASCERLFQPHLEGKPVVVLSNNDGCAIARSNEAKQLGIAMGAPLHQIQAL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ V FSSNY LY D+S RVM TLE+L+PRVEIYSIDEAF DL G+ + GR Sbjct: 63 IKQHQVALFSSNYPLYGDLSARVMRTLEQLAPRVEIYSIDEAFLDLQGMPAPQRQI-LGR 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I V + T + V VGI TKTLAK+AN AKK +T GV+DLS+ + RK + LPV Sbjct: 122 TIHQQVKRWTGIPVSVGIGPTKTLAKVANRFAKK-SPKTEGVLDLSDPQWCRKALHQLPV 180 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWG+G R +K+L+ GI T L L+ R+ FNVVLERTVRELRGE + Sbjct: 181 GEVWGVGPRWAKRLNQAGIDTALQLSRMPPPLARQQFNVVLERTVRELRGESVIPFAALP 240 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 +Q I +R+FG++I + +++AI S+ RAAEKLR + + FI T+ F+ + Sbjct: 241 AARQSIATTRTFGQKIHTHDEIKEAISSFTVRAAEKLRKQGLLAAALHLFITTNRFSEQD 300 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y NS + P D+ ++ A +LDAI++ G+RYQKAGV+L S Q +LF Sbjct: 301 LQYKNSLTWSFQQPQDDTLTLLTGAHAALDAIYRPGYRYQKAGVILLGLVSAQHFQPSLF 360 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-IQQQWQMKRAMLSPRYTTRSSDLLR 420 P S LM +D LN K GRGT+ F +G + W M++ SP YTTR SDL + Sbjct: 361 APPPRLPNSRALMRTLDGLNQKMGRGTVRFGAEGPPKPSWGMRQLQRSPAYTTRWSDLPQ 420 Query: 421 V 421 V Sbjct: 421 V 421 >UniRef50_Q5ZUT9 SOS mutagenesis and repair UmuC protein n=12 Tax=Legionellaceae RepID=Q5ZUT9_LEGPH Length = 431 Score = 355 bits (912), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 202/420 (48%), Positives = 265/420 (63%), Gaps = 9/420 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE +F+P L KP++VLSNNDGCVIAR+ E KALGV+MG P+F K Sbjct: 14 MFALVDCNNFYVSCERLFKPALANKPILVLSNNDGCVIARSNEVKALGVQMGVPYFAVKA 73 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V FSSNY LYADMS RVMS LE+ P +EIYSIDEAF DL + + +F Sbjct: 74 LCKQHKVHVFSSNYTLYADMSRRVMSVLEDNWPAIEIYSIDEAFLDLNTLPQ-SEHDEFC 132 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ VL+ T + V +GI TKTLAKLANH AKK R + N+E Q ++ + Sbjct: 133 RKLQKIVLRHTGIPVSIGIGATKTLAKLANHIAKKELR-----TPVFNIENQYHWLAKIV 187 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR+ KKL GI T DLA D++ I+K F+VVL+RTV ELRG C L++F Sbjct: 188 VGEVWGIGRQWGKKLVQQGIYTAHDLAGMDLQLIKKLFSVVLQRTVLELRGVSCGSLQDF 247 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K I S+SFG T+Y ++ QAI S+ ARA EKLR + +S FIKT+ F L+ Sbjct: 248 ESRKSIIS-SKSFGSMQTEYSALAQAISSHCARAWEKLRHQKLMACHLSIFIKTNQFRLD 306 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y + KL+ PT D R +I A L I+++G YQK GV LGD + QL+L Sbjct: 307 LPQYQQTIGFKLINPTDDLRHLIRCAKLCLRKIFRSGFHYQKVGVYLGDLIEKNCLQLDL 366 Query: 361 FDDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 F+ + + +E+LM+V+D +N K GR TL A +G + W M+ SPRYTT S+L Sbjct: 367 FNQVSEKELNQTERLMSVLDEINTKYGRHTLRLAAEGHVKPWAMRAQSRSPRYTTSWSEL 426 >UniRef50_C6XEM8 DNA-directed DNA polymerase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEM8_METSD Length = 425 Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 193/421 (45%), Positives = 255/421 (60%), Gaps = 8/421 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL DVNA Y SC VF P L GK +VL+NNDGC ++RN AK LG+KMG+PWF+ K Sbjct: 5 IALVDVNAMYWSCHRVFNPSLEGKAGIVLTNNDGCAVSRNDLAKQLGIKMGEPWFQIKAN 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + VV FSS Y LYA MS R + L E SP EIYSIDE F DLTG+R + G Sbjct: 65 PKYKDVVAFSSTYALYASMSKRFTNLLAEFSPHQEIYSIDECFLDLTGMRGRQ--IQRGL 122 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 IR + L V VGI TKTLAKLANH AKK+ GVVDL+ E + + + L Sbjct: 123 NIRHRIKNEVGLPVCVGIGSTKTLAKLANHIAKKFP-HFEGVVDLNEWEPHQMVAMFTML 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V VWG+GRR +++L A+ +K+V+DL D FIR+ F+VVLERTVREL GE CL LE Sbjct: 182 DVGQVWGVGRRYAERLAALDMKSVMDLKLADPEFIRQQFSVVLERTVRELNGEACLDLEA 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K++II SRSFG +I D P++ A+ S+ +RAAEKLR ++ Y IS ++T+ F Sbjct: 242 VREDKKQIISSRSFGRQIEDLPALVNAVSSFVSRAAEKLRLQNSYAGVISVEVETNRFN- 300 Query: 300 NEPY--YGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 +PY YG A ++L PT D+ + + A L I++ G RYQ+AG+ML + G Q Sbjct: 301 PDPYSKYGKRACIRLPAPTDDTLKLNHVAQWILKKIYKPGFRYQRAGIMLDEIVPAGGGQ 360 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 ++LF + L V+D +N++ G+ + G W MK+ +LSP YTTR D Sbjct: 361 VDLFGYQPAIGKRDNLSAVVDEINSRMGKNAVRVGTMGFSMDWDMKQDLLSPFYTTRIED 420 Query: 418 L 418 L Sbjct: 421 L 421 >UniRef50_D0J481 DNA-directed DNA polymerase n=4 Tax=cellular organisms RepID=D0J481_COMTE Length = 432 Score = 347 bits (891), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 194/432 (44%), Positives = 265/432 (61%), Gaps = 19/432 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE FRP L G PVVVLSNNDGC I+R+ EAKALGVKMG P+F+ +D Sbjct: 1 MFALIDGNNFYVSCERAFRPALQGIPVVVLSNNDGCAISRSDEAKALGVKMGQPFFQLRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFC-DLTGVRNCRDLTDF 119 L G+VC S+N+ELY DMS+R+MS L P EIYSIDE+F DL GV RDLT Sbjct: 61 LVEHKGLVCLSANFELYGDMSDRMMSLAAGLGPTQEIYSIDESFIGDLDGV---RDLTRR 117 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGG-------VVDLSNLERQ 172 IRA +L+ T + VG+A TKTLAKL NH AK +R+ G V + + L Q Sbjct: 118 AFAIRARILKWTGIPTCVGLAPTKTLAKLCNHVAKDSERKPGSYPAELQRVCNWAELSEQ 177 Query: 173 RK--LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 ++ ++ ++WG+GRRIS +L G+ T LDLA R ++VVLERTVREL+ Sbjct: 178 QRTDILGRTAAGEIWGVGRRISVQLAEQGVLTALDLARLPAHAARDGWSVVLERTVRELQ 237 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G C+ LE K++I C+RSFG IT P + +A+ +A RAAEKLR+ + Sbjct: 238 GVSCMSLETAPAAKKQIACTRSFGHPITTLPPLIEAVSEFATRAAEKLRAGGLRAGALHV 297 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 F+ TSPF +Y +A ++L P+ D++ ++NAA L +I+Q G++ KAGVML D Sbjct: 298 FVHTSPFRPGRRFY-ETAVIQLQPPSSDTKALVNAAVHGLRSIYQPGYQLSKAGVMLQDL 356 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ----WQMKRAM 406 V Q +L R S +LM MD +N + G+GT++ A G+ +Q W+M++ Sbjct: 357 CPTEVQQGDLLFQEPCRDQS-KLMEAMDKINKRFGKGTVHVASTGVPEQDESGWRMRQER 415 Query: 407 LSPRYTTRSSDL 418 +PRYTT+ ++ Sbjct: 416 RTPRYTTKIDEI 427 >UniRef50_B4YK21 TumC n=1 Tax=Tetrathiobacter kashmirensis RepID=B4YK21_9BURK Length = 438 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 191/422 (45%), Positives = 258/422 (61%), Gaps = 9/422 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 + L D N FY SCE VFRP L GK ++ LSNNDGCVI+R EAKA+G+KMG PWF+ K L Sbjct: 18 YGLIDGNCFYCSCERVFRPFLKGKALISLSNNDGCVISRTDEAKAMGIKMGQPWFEIKHL 77 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + G++ SSN+ LY DMS+R+MS + SPR EIYSIDE+F D +G+ DL+ + + Sbjct: 78 EEK-GLMALSSNFALYGDMSDRMMSVISRFSPRQEIYSIDESFADFSGI--TEDLSAYSQ 134 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 +IRA VL+ T + VGI TKTLAKLANH AKK Q GV DL+ L+R + +M + Sbjct: 135 KIRAAVLRETGIPTCVGIGATKTLAKLANHIAKK-QPSWSGVCDLTQLDRYQLADIMKNI 193 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +VWGIGRRI+K+L+ +GI TV DLA R F++V+ +TV+ELRG + LEE Sbjct: 194 EVGEVWGIGRRIAKRLNELGIYTVFDLARMKPEAARAEFSIVVGKTVQELRGISRIDLEE 253 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A K++II SRSFG +TD ++ A+ + A A KLR ++ + FI+TSPF Sbjct: 254 VADPKKQIISSRSFGLPMTDLAGLQSALSEFVAIACNKLRGQNSVAASMQIFIRTSPFDK 313 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + YGNS V PT D+ A ++LDAIW+ G +Y+KAGVML D Q Sbjct: 314 GKQ-YGNSRLVTPPYPTADNLVFTKHALKALDAIWRPGFKYKKAGVMLMDISPADAVQGE 372 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYTTRSSD 417 LF QLM +D +NA+ GRG++ G + W M++ S YTT + Sbjct: 373 LFPVEPEHGKRAQLMVALDGINARYGRGSVKTGSIGFHDREHWYMRQERKSQGYTTNWDE 432 Query: 418 LL 419 +L Sbjct: 433 VL 434 >UniRef50_Q0ACU7 DNA-directed DNA polymerase n=3 Tax=Nitrosomonas eutropha C91 RepID=Q0ACU7_NITEC Length = 431 Score = 340 bits (873), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 184/428 (42%), Positives = 259/428 (60%), Gaps = 14/428 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF+P L KP++VLSNNDGC IAR+ +AKALGVKMG PWF+ K Sbjct: 3 LFALIDGNNFYCSCERVFQPQLQNKPLIVLSNNDGCAIARSEQAKALGVKMGHPWFQVKH 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + G++ S+N+ LY DMSNR+MS EL EIYSIDE F L G+ D+T Sbjct: 63 LEKSAGLISLSANFALYGDMSNRMMSLASELGDSQEIYSIDECFLGLQGI---PDVTQRA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGG-------VVDLSNL-ERQ 172 ++ RA +LQ + +GI +KTLAKLANH AK +R+ G V +L L ERQ Sbjct: 120 KDTRAKILQWIGIPTCIGIGASKTLAKLANHIAKDAERKPGSYPPRLAQVCNLVELTERQ 179 Query: 173 RK-LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 R L + ++WGIGRRI ++L GIKTV D + D +RK F+V LERT REL G Sbjct: 180 RMYLFGITDIGEIWGIGRRIGQQLKDAGIKTVKDFVELDPGTVRKRFSVTLERTWRELHG 239 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + C+ LEE K+EI +R+FG+ + D S+ +A+ + +RAAEKLR + + I F Sbjct: 240 QSCIDLEEIPAPKKEIAYTRTFGQPVRDLVSLTEAVTEFTSRAAEKLRRQQSFASAILVF 299 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I TS P Y S +V L+ P D+ +++AA R L I++ G+ + KAGV+L D Sbjct: 300 IHTSKHRAG-PQYARSITVPLVRPASDTNSLLSAAIRGLRTIYKPGYDFIKAGVILMDLS 358 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPR 410 + V Q+ L ++ ++QLM +D +N++ GRGT+ + G ++ W M + +P Sbjct: 359 TTTVQQIELDFGSSMSNKADQLMQAIDQINSQFGRGTIIYGSTGTGKKTWSMSQQRKTPS 418 Query: 411 YTTRSSDL 418 YT + D+ Sbjct: 419 YTAKIRDI 426 >UniRef50_B5JVF1 UmuC protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVF1_9GAMM Length = 420 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 176/419 (42%), Positives = 257/419 (61%), Gaps = 5/419 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL D N FYASCE VFRP L G+P+ VLSNNDGC+IAR+ E KALGV MG P F+ Sbjct: 1 MLALVDCNNFYASCERVFRPKLEGRPIAVLSNNDGCIIARSQETKALGVPMGAPLFQWLP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + G FS+N+ LY D+SNRVM+ L++ PR+E+YSIDEAF DL+ V C +L+DF Sbjct: 61 VLEENGAHIFSANFALYGDLSNRVMAVLKDECPRLEVYSIDEAFLDLSMVPLC-ELSDFC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R +R V + T + V +G+A +KTLAKLANH AKK + G+ + E+ R MS+LP Sbjct: 120 RALREKVRRWTGVPVSIGVAPSKTLAKLANHVAKK-HPSSDGIWLMRGTEKNR--MSSLP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+GRR+ + + GI TV L + + + RK +V +ERTVRELRGE C ++ Sbjct: 177 VSEVWGVGRRLGARFEGFGINTVWQLRNAETAWARKVASVNMERTVRELRGERCFDIDST 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q+I+ SRSFG+ +T + A+ ++A RA EKLR + + I F T+PF + Sbjct: 237 EEPRQQILVSRSFGQMVTSKDELASALSNFAWRAGEKLRRQGARTQSIRLFAHTNPFRKD 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y ++ T + A + LD +++ G+ Y+KAGV+L + +G+ Q +L Sbjct: 297 MPRYCGRVRIQFHQATDSPPVLAKAVAQGLDQVYRHGYHYKKAGVVLDELLPRGIVQWSL 356 Query: 361 FDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 + + R + VMD +N K G G + A QG+ + W+M+++ SP +TT ++L Sbjct: 357 LSEESERCEKKSHIGGVMDAINDKMGTGKIRMASQGLGENWKMQQSRQSPSWTTDWANL 415 >UniRef50_A9E9W4 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Kordia algicida OT-1 RepID=A9E9W4_9FLAO Length = 421 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/419 (42%), Positives = 256/419 (61%), Gaps = 4/419 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL DVN Y SCE VF P L GKPVVVLSNNDGCVI+R+ EAK LG+ MG + Sbjct: 1 MYALVDVNNMYCSCERVFNPKLIGKPVVVLSNNDGCVISRSNEAKKLGIPMGAVTHLFEK 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +F+ V +SSNYELY D+S+R+M L + +P +E+YSIDEAF G + DL D G Sbjct: 61 IFKDHHVQVYSSNYELYGDLSDRLMHVLSKFTPDIEVYSIDEAFLQFKGFEHF-DLNDLG 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EI+ T+LQ L + +GIA TK LAK+AN AKK+ ++TGGV + + +++K ++ L Sbjct: 120 IEIKETILQYIGLPISIGIAPTKALAKVANRIAKKFDKKTGGVYVMDSEHKRKKALNWLS 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGRR + KL+ GI + AD ++RK F+VV R ++L+G P L LEE Sbjct: 180 IEDVWGIGRRNASKLNRYGITKAIQFADAPDNWVRKEFSVVGLRLKKDLQGIPTLSLEE- 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +K+ I +RSF + + +++ I SY A+EKLR + C I F+ ++ F + Sbjct: 239 VESKKSIAVTRSFAKTKNNLQDLKEIIASYGCVASEKLRVQKSCCNLIMVFVHSNRFRKD 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NS VKL T S I A +++ +I++ G+ ++KAG+M+ QLN+ Sbjct: 299 LPQYNNSLVVKLPYSTNSSLIIAKYAKKAIQSIFKKGYEFKKAGIMVMGLVPDNAQQLNM 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 F+ A +QLM+ +D LN+K G+ TL A Q + W M++ LS YTT +D+L Sbjct: 359 FE--ACNSDHKQLMSTIDRLNSKYGKNTLNIASQKLDSSWAMRQNNLSQNYTTDFNDIL 415 >UniRef50_Q11V03 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=5 Tax=Bacteroidetes RepID=Q11V03_CYTH3 Length = 420 Score = 337 bits (864), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 178/425 (41%), Positives = 252/425 (59%), Gaps = 8/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N FYASCE VF P L GKP+VVLSNNDGCVIAR+ EAKALG+ MG +F ++ Sbjct: 1 MYALIDCNNFYASCERVFNPSLNGKPIVVLSNNDGCVIARSNEAKALGIDMGGAYFMIEE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 ++ V FSSNY LY DMS RVM+TL E +P +E+YSIDE+F + G DL +G Sbjct: 61 ALKKHNVFVFSSNYTLYGDMSQRVMNTLAEFTPEIEVYSIDESFLNFEGFELLGDLKIYG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV + T + V +GIA TK LAKL+N AKK + V L+ Q K+M+AL Sbjct: 121 TTIRNTVFRNTGIPVSIGIAPTKALAKLSNRIAKKNKEYNHVCV----LDSQEKIMAALK 176 Query: 181 ---VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 VD++WGIGR L GI+T D ++RK+ +VV R +EL+GE CL+L Sbjct: 177 ITTVDNIWGIGRAYHNFLLNHGIQTTYDFVQQPEEWVRKNMSVVGLRLHKELKGEKCLEL 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E A KQ I SRSFG +TD +++A+ ++A+R A KLR + C + + T+ Sbjct: 237 ELVAMAKQNICTSRSFGRYLTDIDPIKEAMSNFASRCALKLRKDKSVCTLVQILLHTNKH 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 ++P Y + + L PT + ++I A+ R+LD +++ G+RY K GV++ + Q Sbjct: 297 KPDQPQYFVNKVITLPVPTNSTIELIQASLRALDLVYKPGYRYMKCGVIVSGIVPEDRVQ 356 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 NLF D R ++ T+MD LN G + G+ +QW +K LS Y+TR + Sbjct: 357 QNLF-DTVDRSKHNKVTTIMDKLNKSLGADFVKVGSLGVTKQWHLKAEKLSQCYSTRWDE 415 Query: 418 LLRVK 422 ++ +K Sbjct: 416 IIVIK 420 >UniRef50_C3X802 DNA-directed DNA polymerase n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X802_OXAFO Length = 420 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 179/420 (42%), Positives = 260/420 (61%), Gaps = 11/420 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N F+ SCE VFRPDL GKPV+VLS+NDGC IAR+ EAKALG++MG+PWFK KDL Sbjct: 5 LALVDCNNFFVSCERVFRPDLEGKPVIVLSSNDGCAIARSNEAKALGIRMGEPWFKVKDL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + VV FSSN+ LY+D+SNRV L + SP E+YS+DE+F DLTG D+ + Sbjct: 65 PKYRDVVVFSSNFPLYSDLSNRVKYLLADFSPVQEVYSVDESFLDLTGF---DDVKERMV 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK--LMSAL 179 IR TV +R + V VG+ TKTLAKLAN+ AKK R + GV + L Q+K L+ + Sbjct: 122 AIRETVAKRIGIPVCVGVGPTKTLAKLANYVAKKHPR-SKGVFHYNVLTEQQKSGLLKQI 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+D+VWG+GRR+++ L + GI+TV L + DIR +R + VV+ER + ELRG C+ + + Sbjct: 181 PIDEVWGVGRRLNRSLISRGIETVYQLREADIRTMRSRYGVVMERLISELRGISCIDMVD 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +P K++I+ SRSFG IT+ + AI +A + ++LR +H + F+ T F Sbjct: 241 VSPPKKQILSSRSFGGVITEIDDLENAIAFHATKIGKQLRRQHSIAGMVHVFLMTDRFRK 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++P Y S+ L+ T + +I A L I++ G+ Y+KAG + + + V + Sbjct: 301 DKPQYHPHVSLPLIDATNSTIEINRYAMMGLHRIFRPGYEYRKAGACVSELSPESVFSPD 360 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-IQQQWQMKRAMLSPRYTTRSSDL 418 +F D P ++M VMD +N + G GTL + + ++W+ K +SPRYTT +L Sbjct: 361 MFTD----PKRRKIMQVMDEINDRFGNGTLRLSQDDMMHRRWRPKVDRVSPRYTTSWDEL 416 >UniRef50_A6ET82 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=4 Tax=Bacteroidetes RepID=A6ET82_9BACT Length = 421 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 181/424 (42%), Positives = 256/424 (60%), Gaps = 5/424 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL-GVKMGDPWFKQK 59 M AL D N+FYASCE VFRPDLWGKPVVVLSNNDGC+IA N EAKAL + M +P FK K Sbjct: 1 MIALVDCNSFYASCEQVFRPDLWGKPVVVLSNNDGCIIAANREAKALTDIAMFEPVFKIK 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 V FSSNY LY ++S RVM+TL SPRVE+YSIDE+F DL G + ++L + Sbjct: 61 KQLIAHNVTLFSSNYTLYGELSQRVMNTLYLFSPRVEVYSIDESFVDLHGFGH-KNLKHY 119 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G I+ T+ + T + GVGIA TK LAKLAN AKK V S+ +R +++ Sbjct: 120 GNFIKETIFRNTGIPTGVGIAPTKVLAKLANKIAKKGPEHDHVFVIDSDAKRI-EILKTT 178 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + +WGIGR+ +KKL +GI T + + ++RK VV ER RELRGEPC+ + E Sbjct: 179 EIKSIWGIGRQQTKKLKEVGIHTAYQFTEMPLAWVRKEMTVVGERLWRELRGEPCMDMIE 238 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K+ I ++SFG ++ + +A Y + AE LR++ ++ F+ TS F++ Sbjct: 239 IPKPKKGIGTAKSFGRKLERLDLIEEACAYYISEVAEVLRAQKSCAMYLQVFLNTSSFSV 298 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 N+ Y N +V L PT ++ ++ A + L AI++ G+RY+K GV L + Q N Sbjct: 299 NDKQYRNKQTVTLAIPTNNTFTLVTEARKILKAIYKPGYRYKKVGVNLTGIIPEAYVQGN 358 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ-QQWQMKRAMLSPRYTTRSSDL 418 LF+ E LM + DTLN K G+G ++ G + ++W++ +A SPR+TT+ S++ Sbjct: 359 LFESPKTEKHKE-LMQLFDTLNYKYGKGKVFSGLTGTRMKEWELVKADRSPRFTTQWSEI 417 Query: 419 LRVK 422 L VK Sbjct: 418 LEVK 421 >UniRef50_Q4FMY4 UmuC n=6 Tax=Bacteria RepID=Q4FMY4_PELUB Length = 426 Score = 333 bits (855), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 170/403 (42%), Positives = 248/403 (61%), Gaps = 6/403 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N+FY SCE +F P + KPVVVLSNNDGC+IAR+ EAK LG+KMG+P+FK K++ Sbjct: 10 IALVDCNSFYVSCERLFNPKIRNKPVVVLSNNDGCIIARSNEAKFLGIKMGEPYFKAKEI 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V FSSNY LY D+S RVM TL+ +P +EIYS+DEAF DL+ + ++ D G+ Sbjct: 70 ILKNKVYVFSSNYSLYGDLSRRVMRTLKRFNPELEIYSVDEAFLDLSNYPD-DEVEDVGK 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 EIR+ +LQ T + +GIA+TKTL+K+ANH AKK Q GV +L +E L+ + + Sbjct: 129 EIRSIILQWTGIPTSIGIAKTKTLSKIANHIAKKKQ---SGVTNLIGIENIDPLLEKIDI 185 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +DVWG+G++++K GI L + +I+K NV+ RT ELRG PC+ LE Sbjct: 186 NDVWGVGKQMTKFYHQNGIYNAKQLKNMSNTWIKKSSNVLSSRTALELRGIPCIPLETKT 245 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++ + SRSFG R+ + + +A+ SY A+EK+RSE + I+ ++TSPF Sbjct: 246 SKRKSCVVSRSFGTRVEKFQELEEAVASYCLNASEKIRSESLIAKSITVSVRTSPFQNRG 305 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 YY N+ ++ T +S +I+ A +L+ I+ G+RYQKAG+ L S ++ NLF Sbjct: 306 VYYSNAKTIDFPIATNNSIEIVKTALIALNEIFINGYRYQKAGITLTGLVSSSGSK-NLF 364 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKR 404 + LM +D+ N K GR TL A G+ ++W M+R Sbjct: 365 STEKDEK-IKGLMRSIDSTNYKYGRSTLSLASAGVNKKWNMRR 406 >UniRef50_Q6R286 SOS inducible DNA polymerase (Fragment) n=15 Tax=Enterobacteriaceae RepID=Q6R286_ECOLX Length = 395 Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKW 156 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKW Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKW 156 Score = 270 bits (691), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 128/128 (100%), Positives = 128/128 (100%) Query: 268 CSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAAT 327 CSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAAT Sbjct: 268 CSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAAT 327 Query: 328 RSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRG 387 RSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRG Sbjct: 328 RSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRG 387 Query: 388 TLYFAGQG 395 TLYFAGQG Sbjct: 388 TLYFAGQG 395 >UniRef50_A5FIG7 DNA-directed DNA polymerase n=10 Tax=cellular organisms RepID=A5FIG7_FLAJ1 Length = 446 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 172/422 (40%), Positives = 257/422 (60%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASC+ VF P L KP+V+LSNNDGCVI+R+ EAKALG+ M P FK + Sbjct: 28 MFALVDCNNFYASCQRVFEPHLREKPIVILSNNDGCVISRSDEAKALGIPMAIPAFKYES 87 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +F+ + +SSNY LY DMSNRVM+ L +P +EIYSIDEAF +G + D+ G Sbjct: 88 VFKEKNIFVYSSNYPLYGDMSNRVMNLLRTYTPEIEIYSIDEAFLKFSGY-DLFDMNTLG 146 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R V Q T + V +G A TK LAK+AN A+K+ +T V + + E++ K + Sbjct: 147 LKMRKEVTQGTGIPVSIGFASTKALAKMANKIARKFADRTQNVHCIDSEEKRVKALKWSK 206 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGR+ +K+L A I T + ++RK +VV R EL G+P L+LEE Sbjct: 207 IEDVWGIGRKHAKRLKAKKINTAYEFTQLPDAWVRKEMSVVGLRLKHELEGKPTLELEE- 265 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A ++ I +RSF +R T Y + + I ++ A AEKLR ++ +C ++ FI+TS Sbjct: 266 AADRKMIATTRSFEKRYTSYEEISERISTFTASCAEKLRRQNCHCNMVTVFIQTSFIKNE 325 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +Y S ++ PT + ++ AA + AI++ G+RY+KAGV++ QLNL Sbjct: 326 ESHYSRSITITTDFPTNSTIELNAAAQKGFKAIFKKGYRYKKAGVIVMGLTPNSETQLNL 385 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+ + P+ + LM+V+D +N G + F Q + +QW+MK+ LSP+++T D++ Sbjct: 386 FETSNPK--HQPLMSVIDKMNQNYGNNKIKFGVQSLGRQWKMKQNRLSPKFSTSLKDVIT 443 Query: 421 VK 422 VK Sbjct: 444 VK 445 >UniRef50_Q8VMP6 RuvB protein n=4 Tax=Pseudomonas RepID=Q8VMP6_PSEPU Length = 402 Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 177/393 (45%), Positives = 243/393 (61%), Gaps = 4/393 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F L DVN+FY SCE +FRP+L +PVVVLSN+DGC++AR EAKALG+KMGDP+FK ++ Sbjct: 9 IFGLVDVNSFYCSCERIFRPELRHRPVVVLSNSDGCIVARTNEAKALGLKMGDPYFKVRN 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV FSSNY LY ++S+RV + L P E YSIDE F +L G+ + D G Sbjct: 69 FLEQNGVAVFSSNYTLYGELSHRVGVAIASLVPEWEQYSIDELFVNLDGLPE--PIIDVG 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R I+A VLQ T L VGVGI TKTLAK A HA+K W+ +TGGVVDL + L+ +P Sbjct: 127 RAIQARVLQWTALPVGVGIGHTKTLAKAAQHASKVWREKTGGVVDLRKPDAVEWLLRRMP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VD+VWGIG R+ L GI T +L+ D R + + ++VVLERT+REL+GE C+ LE+ Sbjct: 187 VDEVWGIGSRMRDNLARDGITTAWELSQADARAMGRKYSVVLERTIRELQGESCMDLEQT 246 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I S+ FG+R+ +++A+ +Y RAAEKLR + C + I+TS F + Sbjct: 247 VAPKQTICSSKMFGQRVHTLQGLQEALATYIHRAAEKLRLQRSLCGAMRIGIQTS-FHGD 305 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N+A+ PT D R + A ++ + I++ G Y KA V+L D +G +L Sbjct: 306 GPKYANAATCIPAYPTDDVRQLTKYALQAAEQIYRPGFAYSKAEVLLLDLRKRGEYTQDL 365 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 F + P S+ LM MD +N + G L A Sbjct: 366 FSPSQPE-RSDALMATMDKINRRWGHDCLRTAA 397 >UniRef50_C7RB82 DNA-directed DNA polymerase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB82_KANKD Length = 422 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 173/422 (40%), Positives = 255/422 (60%), Gaps = 10/422 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +ALCDVN+FY SCE +FRPDL+GKPV+VLSNNDGC+IA + EAKALG+ M P+ + + + Sbjct: 8 YALCDVNSFYVSCERMFRPDLYGKPVIVLSNNDGCIIALSDEAKALGIPMAAPYHEARPI 67 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ V CFSSNY LY D+S R LE+ +V YS+DE+F G +N DLT + Sbjct: 68 IQKHKVTCFSSNYGLYGDISKRFNWILEQHCDQVAPYSVDESFMRFEGFQN--DLTQRAQ 125 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR+ + + L V +G+ TKTLAK+ANH AKK + T GVVDLSN ++ + + V Sbjct: 126 AIRSELWRCLSLPVCIGLGPTKTLAKVANHFAKKHKTTTHGVVDLSNPATRKWALKQIAV 185 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +WGIGR++SKKL I T DL + D + +++ F+V +ERT+ ELRG+PCL+ E Sbjct: 186 AKIWGIGRQLSKKLILQDIHTAWDLHNADYKTLQRMFSVNMERTILELRGQPCLKFSELP 245 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 K+ I+ SRSFG+ ++ Y +++A+ + +R EKLR++ I+ F+ E Sbjct: 246 EPKKSILNSRSFGKPLSIYSDLKEAVAHHTSRCCEKLRNQSSLASSITVFLYGQ---RKE 302 Query: 302 PYYGNSASV--KLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y N SV +L PT D+ + A + L I +AG Y+KAG+ML Q + Sbjct: 303 LVYHNRPSVTLQLPEPTDDTSIFLQAVEQGLRHIVKAGESYKKAGIMLNGIVDSHGYQPD 362 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 +F+ RP +LM +D +N + G+ T+ F G + W M+ SP YT+R D+L Sbjct: 363 IFEGVPQRP---ELMESLDKINRRYGQDTVKFGSLGFAKNWAMRANSCSPHYTSRWQDIL 419 Query: 420 RV 421 ++ Sbjct: 420 KL 421 >UniRef50_C7I5S1 DNA-directed DNA polymerase n=2 Tax=Proteobacteria RepID=C7I5S1_THIIN Length = 431 Score = 327 bits (839), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 193/431 (44%), Positives = 250/431 (58%), Gaps = 14/431 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASCE VF+P+L GKP+VVLSNNDGC IAR+ EAKALGVKMG P F+ Sbjct: 1 MFALIDGNNFYASCECVFQPELRGKPLVVLSNNDGCAIARSDEAKALGVKMGQPIFEVPP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR + S+N+ LY DMS RV++ L E +PRVE YSIDE+F DLTG+ F Sbjct: 61 AVRR-QLAIRSANFTLYGDMSARVLAILREAAPRVESYSIDESFLDLTGILKPGSREAFC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGG-------VVDLSNLERQ- 172 RE+R V + T + VGI TKTLAKL NH AK R+ G V DLS L Q Sbjct: 120 RELRERVHRWTGIPNCVGIGATKTLAKLGNHVAKSAVRKPGSYPAELGRVADLSALSPQG 179 Query: 173 -RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 +++A PV ++WG+GRR + KL +M I+T L L D I F VVL RT REL Sbjct: 180 LSAVLAATPVGELWGVGRRWAAKLRSMNIETALQLRDAPRALILDSFGVVLSRTQRELAS 239 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 EPCL LEE P +Q+I+ SRSFGER+ D+ S+ +A ++A RA EKLR+ + F Sbjct: 240 EPCLALEEVEPDRQQIMVSRSFGERVEDHQSIGEAFATFAMRACEKLRARGLVASAVGIF 299 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 T F + + L T DSR ++N + + G+ Y+KAGV L D Sbjct: 300 ANTDHFRPELHQHHPQRTTDLPRATSDSRVVLNTIRQMQRGFLKDGYAYKKAGVWLMDLS 359 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ--QWQMKRAMLSP 409 Q +LF G ++LM +D +N + GRGT+ G ++ QW M++A LS Sbjct: 360 RPDQLQPDLFSTIT--IGDDKLMQTLDAINRRYGRGTVGLGATGWRERPQWGMRQATLSS 417 Query: 410 RYTTRSSDLLR 420 R+TT DL R Sbjct: 418 RFTTSLRDLPR 428 >UniRef50_D0RPK3 Protein UmuC n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPK3_9RICK Length = 433 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 170/417 (40%), Positives = 252/417 (60%), Gaps = 4/417 (0%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N+FY SCE +F P + PVVVLSNNDGCVI+R+ EAK +G+KMG+P+FK K L Sbjct: 15 ALVDCNSFYVSCERLFNPRINNLPVVVLSNNDGCVISRSVEAKKIGIKMGEPYFKVKHLI 74 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 + V FSSNY LY D+S RVM L++ P +EIYSIDEAF DL+ +++ DL +F E Sbjct: 75 KSHKVQVFSSNYALYGDISRRVMHVLKKFCPTIEIYSIDEAFLDLSLIKD-EDLENFISE 133 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +R +L+ T + V +G+A+TKTL+K+ANH AKK + + L++ + L+ P++ Sbjct: 134 LRFIILKWTGIPVSIGVAKTKTLSKVANHIAKKEKIGIKSFI-LNDEKEIDDLLKNFPIE 192 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 D+WG+GR+ISK + IK+ DL D R+I+K+ NV+ +TV ELRG C+ E + Sbjct: 193 DIWGVGRKISKLYKSNNIKSAYDLKDASNRWIKKNTNVLGLKTVMELRGINCIGFESNSN 252 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 ++ SRSFG+++ DY ++++++ ++ AAEK+R + Q + + FI+ SPF +E Sbjct: 253 PRKNCCVSRSFGKKVLDYDTLKESVVAHCLNAAEKIRVDRQVVKSVIVFIRNSPFDKSEK 312 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 ++ S V L P+ DS + +SL I+ G RYQKAGV+ +G LF Sbjct: 313 FFSRSKKVDLPIPSDDSILLTKICIQSLKEIFLKGPRYQKAGVIFSGLSRKGKYDEGLF- 371 Query: 363 DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 + S+ LM +D N K GR + A G W+M+R S + T S D L Sbjct: 372 SYEKKEKSQSLMKAIDKTNFKFGRNMITVADTGFCNNWRMRRGH-SSKIDTSSYDFL 427 >UniRef50_C6BX75 DNA-directed DNA polymerase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BX75_DESAD Length = 423 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 175/423 (41%), Positives = 248/423 (58%), Gaps = 5/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE +FRP++ +PVVVLSNNDGCVI+R+ EAK +GV MG P +K + Sbjct: 3 IFALVDCNNFYVSCERLFRPEIKHRPVVVLSNNDGCVISRSQEAKDIGVPMGAPAYKYQS 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 F + V FSSNY LY D+S RV +TL L+P +E+YSIDE+F + R+L G Sbjct: 63 FFLQNNVEIFSSNYALYGDLSQRVTATLASLTPDLEVYSIDESFLEFPPCM-LRELPSIG 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +EIR +L+ T + V VG TKTLAK+A+ AKK+ QT G L +L+ +P Sbjct: 122 KEIRTRILKWTGIPVSVGFGSTKTLAKVASRFAKKYP-QTEGTFSLCGRNDLDRLLDKVP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V DVWGIGRR K+L A G+ T D +++K+ +V T ELRG PC +L+ Sbjct: 181 VTDVWGIGRRHGKRLIARGVSTARTFKDLPNLWLKKNMSVTGLHTALELRGTPCFELDNS 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSFG +T + +++ +Y ARA EKLR + + ++ T+ F N Sbjct: 241 PKPKKTISSSRSFGRPVTALSDLEESVAAYVARAGEKLREQQSLTNGVMVYLTTNRFN-N 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NSA+ L T + ++IN + + +I++ G Y+K GV+L D + Q NL Sbjct: 300 LPQYSNSATRMLPIATDYTPELINTGLQCIRSIYKEGFSYKKTGVVLLDLCGKYNRQCNL 359 Query: 361 --FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 D A E +M ++D+ N + GR TL +A +G++Q WQM R SP YTT DL Sbjct: 360 LELDHKAESAKKEAIMNLLDSANTRFGRRTLSYASEGLEQPWQMNRKYKSPSYTTSWDDL 419 Query: 419 LRV 421 ++ Sbjct: 420 PKI 422 >UniRef50_A8ZLK7 DNA polymerase V, putative n=4 Tax=Cyanobacteria RepID=A8ZLK7_ACAM1 Length = 421 Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 178/418 (42%), Positives = 258/418 (61%), Gaps = 6/418 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + LCD N+FYASCE+ P L KPVV+ SNNDG V+ NA+ KALG+ MG P FK + Sbjct: 5 LIGLCDCNSFYASCESALNPSLQHKPVVIASNNDGVVVTANAKGKALGLVMGVPLFKVQA 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V FSSNY LY D+S+RVM+ LE +P EIYSIDE F + + T + Sbjct: 65 LIKKHDVRVFSSNYALYGDLSSRVMTILETFTPEQEIYSIDECFMRMP---EFAEATTYS 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R TVLQ T + V +GI+ +KTLAK+ANH AKK Q+Q GGV D+S +++ P Sbjct: 122 HKVRKTVLQWTGIPVSIGISTSKTLAKIANHVAKK-QKQYGGVFDISAARNAEGILATFP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V D+WGIGR+ +K L + GI++ +L D + IRK VV R + ELRG CL LE Sbjct: 181 VADIWGIGRQYNKWLLSQGIESAKELRDANEGLIRKKMGVVGVRMIHELRGISCLPLELV 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A K+E SRSFG+ +T+ +++AI +YA+RAAEKLR + Q + F +TSPF Sbjct: 241 AKPKKETCVSRSFGQPVTELADLQEAIAAYASRAAEKLRHQEQVAEAMVVFARTSPF--K 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y+ SA+V+ T + I+ +A ++ I++ G +QKAGV++ + Q +L Sbjct: 299 SGYFRQSATVQFPIATNYTPTIVESARNAMARIYEPGREFQKAGVLMVGLCPETTIQGHL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 ++ + ++LM++MD +N + GRGTL A G++Q W+M+ SPRYTT ++L Sbjct: 359 WEKDEGWEKRKRLMSIMDEVNDRFGRGTLEIAASGLRQTWRMQSKWRSPRYTTCWAEL 416 >UniRef50_Q1QXT4 DNA-directed DNA polymerase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXT4_CHRSD Length = 426 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 181/424 (42%), Positives = 245/424 (57%), Gaps = 4/424 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D N FY SCE VF+P L G PV V+SNNDGCVIAR+ E KALGV+MG P F+ ++ Sbjct: 1 MIGLVDCNNFYVSCERVFQPRLEGVPVGVMSNNDGCVIARSNELKALGVEMGTPAFELQE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + SSNYELY DMS RV LEE S VE YSIDE F G + Sbjct: 61 WVNQGRIHLLSSNYELYGDMSARVREVLEEFSAGVEPYSIDEMFVRFDGF-DAATTQALA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R + V Q T + V VG+A T+TLAKLAN AAKK G V +N + R+L+ Sbjct: 120 RTLYRNVRQFTGIPVCVGVAPTRTLAKLANRAAKKLPEYGGTCVMHANGDDTRRLLEHTA 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + D+WG+G+R+ ++L GIKT DL D + IR+ F+V LERTVREL+G PC++L + Sbjct: 180 LGDIWGVGQRLVERLALQGIKTAWDLRQADPKAIRQRFSVTLERTVRELQGTPCIELHDA 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I+ SRSFG D ++ AI +A R AEKLR + + R + F+KT+ + Sbjct: 240 DRPRDRIMTSRSFGRLTGDLGDLQDAIRQHAQRGAEKLRRQDSHARAVLVFLKTNRHRPD 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y S ++L PT DSR I+ AA + L+ I++ G+R+ K GVML D QL+L Sbjct: 300 LPQYSPSIVIELPEPTDDSRPILAAARQGLETIYRRGYRFMKGGVMLLDLVDANREQLSL 359 Query: 361 FDD---NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 D A R +LM +D LN K G+GT+ W ++ A +PR+TT+ + Sbjct: 360 LDTPEREAQRERDHKLMAALDALNGKMGKGTVRLGVPRQNAAWHLRCAHRTPRWTTQWRE 419 Query: 418 LLRV 421 L R+ Sbjct: 420 LPRI 423 >UniRef50_A5Y0S5 UmuC-like protein n=9 Tax=Proteobacteria RepID=A5Y0S5_ACIBA Length = 425 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/422 (44%), Positives = 247/422 (58%), Gaps = 10/422 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE VF+P L GKPV++LSNNDGC +AR+ EAKALG+KMG P FK ++L Sbjct: 5 IALIDGNNFYVSCERVFQPHLLGKPVIILSNNDGCAVARSEEAKALGIKMGAPLFKIREL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + GV SSNY LY DMS RV+ + + SP EIYSIDE F DL+G + + Sbjct: 65 VKEHGVKVLSSNYTLYGDMSRRVVDAVSQFSPHYEIYSIDENFVDLSGFGDRYEA--IAV 122 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++RATV Q T + VGIA+TKTLAKLAN AAKK GGV D + + +PV Sbjct: 123 DMRATVRQVTGIPNCVGIAETKTLAKLANFAAKK-NPIFGGVCDFTQPAVLAWCLDRIPV 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIGR+ KL + GI T L D R+ VVLERTV EL+G CL++E+ A Sbjct: 182 AEVWGIGRQTQIKLASQGIATAAQLRDMPRTLARQLGTVVLERTVAELQGIRCLEIEDIA 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 P ++ + +RS G + D ++ QA+ ++A+RAAEKLR I+ F T+ F+ N Sbjct: 242 PQRKGMAVTRSAGAPMRDLEAVMQALTAHASRAAEKLRLHGLVAGQITAFFHTNSFSKNA 301 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-----QAGHRYQKAGVMLGDFFSQGVA 356 + S +VKL T ++ D++ A R A W + G+ Y KAGVML D A Sbjct: 302 AQHSVSRTVKLKPMTNNTFDLVQAVNRCARAGWHPKAHEHGYSYTKAGVMLDDLLKAEDA 361 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSS 416 LFD PR +LM MD +N + G+ + QG Q + + K M SPR+TTR S Sbjct: 362 PKMLFDIVQPR--DARLMEAMDAINDRYGKRKVVIGAQGFQNKHEAKADMRSPRFTTRLS 419 Query: 417 DL 418 DL Sbjct: 420 DL 421 >UniRef50_A5FU54 UMUC domain protein DNA-repair protein n=2 Tax=Acetobacteraceae RepID=A5FU54_ACICJ Length = 418 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 192/420 (45%), Positives = 242/420 (57%), Gaps = 12/420 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPW--FKQK 59 F L D N+FY S E F P+L +P+VVLSNNDGC IAR EAKALG+KMG+PW F+++ Sbjct: 4 FGLIDGNSFYCSAEQAFAPELRSRPLVVLSNNDGCAIARTPEAKALGIKMGEPWHLFRKR 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 R V SSNY LY DMS RV L E P+VE YSIDE F DL G+ DL F Sbjct: 64 PESR--AVEWRSSNYALYGDMSRRVYDVLTERVPQVEPYSIDEMFLDLDGIP---DLDRF 118 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R++R V Q + VGI TKT+AKLAN AKK + GGV DL + E + + L Sbjct: 119 CRDLRRDVRQIAKIPTCVGIGPTKTIAKLANKIAKK-ETALGGVCDLRDPELRARHYERL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ +VWGIG ++ KL A GI T+ D D R +R V R ELRG CL L Sbjct: 178 PIAEVWGIGGQVGAKLAAAGITTIADFVRADPRAVRDMLTVTGARVQTELRGASCLPLSL 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 APT++ I SRSFG I +R+AIC++AARAAEKLR+E I+ F T+P Sbjct: 238 MAPTRKGIAVSRSFGHMIDRPAELREAICTFAARAAEKLRAEGLEAGQITVFTHTNPHN- 296 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +P+Y K + PT D+ +I A R L A+W G+RY KAGVML D + Q Sbjct: 297 GDPWYSAQRQGK-IEPTADTGLLIGEAIRLLRAVWHPGYRYFKAGVMLQD-LAPARRQAV 354 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LF + R S M MD +NA+ GRGTL A W +R LSPRYTT++ ++L Sbjct: 355 LF-ASFDRDQSAAAMKAMDAINARFGRGTLRIASTATSPSWGARRQNLSPRYTTQAGEML 413 >UniRef50_A1BFA1 DNA-directed DNA polymerase n=7 Tax=Chlorobiaceae RepID=A1BFA1_CHLPD Length = 426 Score = 320 bits (819), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 177/428 (41%), Positives = 249/428 (58%), Gaps = 11/428 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L +PVVVLSNNDGC IAR+ EAKA+G+ MGDP +K ++ Sbjct: 1 MFALVDCNNFYVSCERVFNPGLQNRPVVVLSNNDGCFIARSEEAKAIGLAMGDPAYKNRE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R+ V +S+N+ LY DMS RVM TLE L+P +EIYSIDE F DL G +L D+ Sbjct: 61 LLRQHNVAVYSANFPLYGDMSARVMKTLETLAPDLEIYSIDECFLDLGGFGKF-NLADYA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R TV + T + V +GI TKT+AK AN AKK GGV LS R+ + A+ Sbjct: 120 AATRKTVHRNTGIPVSIGIGATKTIAKAANRMAKK-NLSLGGVCILSTAAATREALGAMA 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ +WGIG + + L I T LD AD +++KH ++ R +EL G CL LE Sbjct: 179 VEHIWGIGSQYAALLHKQHIHTALDFADAPTHWVQKHLHITGARVQQELNGHSCLPLELV 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I SRSFG ++ Y + AI + + A KLR E ++ F+ TSPF Sbjct: 239 RSRKQSICTSRSFGSLVSSYEEIGYAIAHFTSTCAFKLRREGSRASLLTVFLYTSPFIEK 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG---DFFSQGVAQ 357 E Y + + L P+ ++ ++ AA L +I+++G+ Y+KAGV++ D + Sbjct: 299 ENRYRGTRTFALPFPSNNTLELQKAAQLLLASIYRSGYGYKKAGVLVSGITDEKGAAMTT 358 Query: 358 LNLFDDNAPRPGSE----QLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTT 413 L+LF DN P P ++ +LM +D +N++ G+GTL A W+ ++ LSP YTT Sbjct: 359 LSLF-DNDPLPRNQKRDMKLMETLDAINSRFGQGTLRTASD-TNSGWKQRQEKLSPHYTT 416 Query: 414 RSSDLLRV 421 R +D++ + Sbjct: 417 RWNDIIEI 424 >UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCD0_DESAH Length = 422 Score = 320 bits (819), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 177/423 (41%), Positives = 242/423 (57%), Gaps = 6/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF P L GKPV+VLSNNDGC +AR+ EAKALG+ MG P+F+ K Sbjct: 3 VFALVDCNNFYVSCERVFNPQLVGKPVIVLSNNDGCAVARSNEAKALGIAMGAPFFQIKA 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV FSSNY LY DMSNRVM TL +P +EIYSIDEAF DLT DL ++ Sbjct: 63 IVEGNGVRVFSSNYPLYGDMSNRVMQTLAPFTPAMEIYSIDEAFLDLTNFA-FTDLVNYA 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R TV + T + V +GIA TKTLAK+AN AKK + GV+DL+ + + P Sbjct: 122 RKMRNTVQRNTGIPVSIGIAPTKTLAKIANRIAKK-SSKADGVLDLTPTSYRDLALEMTP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR++ GI+T LD IR + R REL GE C LE+ Sbjct: 181 IGDVWGIGRRLTPFFKYRGIRTALDFKSAAPSLIRGKMGINGIRMQRELAGESCYPLEDC 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ + SRSF T + + QA+ Y +R AEKLR + + ++ ++ T+ F+ Sbjct: 241 PARRKSVAVSRSFKTPATTFDELSQAVSLYISRGAEKLRHQGSFTETLTVYVMTNRFS-P 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + YY NS + L T + + ++I L I+Q+G Y KAG++ G QL+L Sbjct: 300 QSYYYNSKTAVLPTASNSTPELIKQGKGLLKQIFQSGKYYTKAGIVFSSLTRDGQVQLDL 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--QQQWQMKRAMLSPRYTTRSSDL 418 F D R S+ LM MD +NA+ G + +A G+ W+ + SP YTT + L Sbjct: 360 F-DTTDRSRSDNLMQAMDKINARMGSHAVRYAAMGLSGHPSWKGACSHRSPAYTTEWNQL 418 Query: 419 LRV 421 L + Sbjct: 419 LNI 421 >UniRef50_C6M791 Protein UmuC n=2 Tax=Neisseria RepID=C6M791_NEISI Length = 423 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 184/421 (43%), Positives = 245/421 (58%), Gaps = 11/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY SCE VFRP+L PVVVLSNNDGCV+AR+AEAKALG+KMG+P+F+ K Sbjct: 8 MFALIDGNSFYCSCERVFRPELKNVPVVVLSNNDGCVVARSAEAKALGIKMGEPYFRVKH 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + FSSNYELYAD+S R+M T+ P VEIYSIDE F + N D G Sbjct: 68 LVSQGRLKAFSSNYELYADLSRRMMETIAGCVPAVEIYSIDECFATMA---NIGDHAGLG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV---DLSNLERQRKLMS 177 REIR VLQ + VGIA TKTLAK N+ AKK+ GGVV D + R R L S Sbjct: 125 REIRRRVLQWVGIPTCVGIAPTKTLAKFCNYLAKKYPSHFGGVVVWTDWTESIRLRALRS 184 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 V ++WGIG +I+ KL A GI T LD D +R + V +ERT RE++G C L Sbjct: 185 E-AVSEIWGIGNKIAAKLAAQGIFTALDFVLADTATLRLRYGVTIERTQREMQGIVCDGL 243 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 KQ ++ SRSFG RI +++ AI + + AE LR + +S F+ T F Sbjct: 244 HPKPAPKQNLVRSRSFGVRIDTLDALQAAITHHISSGAETLRKDKLTASSVSVFLHTDFF 303 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 +EP Y NS ++ L+ PT D+ + +AA + L I+++G+ Y+K G+ L Q Sbjct: 304 KESEPQYHNSQTISLIVPTSDTVLLNHAAQKILATIFRSGYLYKKCGIELHGLKPAEQIQ 363 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 +L+ P +M D +N + G+G L A + + W+M R LS YTTR +D Sbjct: 364 ADLWQSVTNNP----VMEAWDKINRQYGKGRLKLASELLANNWEMNRDRLSQCYTTRFTD 419 Query: 418 L 418 L Sbjct: 420 L 420 >UniRef50_D1PC12 UmuC protein n=2 Tax=Bacteria RepID=D1PC12_9BACT Length = 461 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 190/462 (41%), Positives = 259/462 (56%), Gaps = 43/462 (9%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D N FY SCE VFRPDL GKPVVVLSNNDGCVIAR+ EAKALG KMGDP+++ K+ Sbjct: 1 MIGLADCNNFYCSCERVFRPDLTGKPVVVLSNNDGCVIARSEEAKALGYKMGDPFYQVKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCD-------------- 106 GV FSSNY LY +SNRVMS L SPR++ YSIDE+F + Sbjct: 61 KLEAEGVAIFSSNYTLYGSLSNRVMSMLSHYSPRIDQYSIDESFFEADESMAKVFFREHA 120 Query: 107 -----LTGVRNCRDLTD--------FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAA 153 L +L++ +G +I A VL+ + + VGIA+TKTLAK+ + A Sbjct: 121 EDHPTLFNKMTIDELSEKPDSLLHRYGSKISADVLRAVGIPISVGIAETKTLAKIGSKFA 180 Query: 154 KKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRF 213 KK++ G + + ER+ K +S PV+DVWGIGR+I++KLD MGI+T AD + Sbjct: 181 KKYKGFQGCCL-IDTDERRHKALSLFPVEDVWGIGRQIARKLDYMGIRTAAQFADKKESW 239 Query: 214 IRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFG-ERITDYPSMRQAICSYAA 272 +R HFN+ RT +EL GE C+ +EE P K+ I SRSF E ITD + +A+ ++A Sbjct: 240 VRSHFNITTLRTWKELNGESCISIEEL-PQKKSICTSRSFANEGITDKNVIEEAVANFAV 298 Query: 273 RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA 332 R EKLR + C+ I+ F TS F + P Y S+ L T +I+ AA L A Sbjct: 299 RCTEKLRRQGSVCQGITVFAWTSRFNEHVPEYTIHDSLTLPIATNAQEEIVGAALSILRA 358 Query: 333 IW------------QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTL 380 + ++KAGV+L Q +LFD R ++LM +D + Sbjct: 359 KYPKPMADSRPDRSDMSFHFKKAGVILWQISPDHPRQQDLFDP-IDRSKQKKLMEAIDAI 417 Query: 381 NAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRVK 422 N K G GT+ A QG ++ +KR +S ++TT D+L+VK Sbjct: 418 NRKNGYGTIRQAIQGTDCRFDLKREYMSKQFTTNIHDILKVK 459 >UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved in DNA repair/SOS mutagenesis and repair n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QJ9_CYTH3 Length = 419 Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 187/426 (43%), Positives = 256/426 (60%), Gaps = 17/426 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N FY SCE VFRPDL +PVVVLSNNDGCVI+R+ EAKA+GVKMG+P+FK K+ Sbjct: 1 MYALIDCNCFYVSCERVFRPDLRQQPVVVLSNNDGCVISRSDEAKAIGVKMGEPFFKMKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R V FSSNY LY D+S+RVM TL + P +E+YSIDEAF L + DL G Sbjct: 61 LVRNGKVTAFSSNYTLYGDLSDRVMKTLASIVPDIEVYSIDEAFLHLN--ESHTDLETLG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV Q T + VGVGIA TKTLAKLAN +KK TGGV + Q KL +A Sbjct: 119 HTIRNTVKQHTGIPVGVGIAPTKTLAKLANRLSKK----TGGVHIIYPDNIQEKL-NACA 173 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR +K+L A + T+ + ++R+HF+V+ RT +EL+G PC+ +E+ Sbjct: 174 LQDVWGIGRRNAKRLQANYVDTIEQFVNQREEWVRQHFSVIGLRTYKELKGIPCIDMEDE 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSFGE + S+++AI ++AA AEKLR + + + S F Sbjct: 234 LTEKKSICTSRSFGELQNTFASIQEAIATHAASCAEKLRKQKCAAAGMYVSLSKSRFTDQ 293 Query: 301 E--PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 E Y+G +KL T ++ +I A++ L+ +++ Y+K GV + D + QL Sbjct: 294 EGDKYFG--TYIKLPQATNNTATLIQYASKGLELLFKKDVYYKKCGVTVIDIVPEEKIQL 351 Query: 359 NLFDDNAPRPGS--EQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAMLSPRYTTRS 415 NLF+ P+ + L +D LN K G+ L A QG W+++ +SP YTTR Sbjct: 352 NLFE---PQKNARLHALEDTIDKLNQKLGKNVLRQAIQGNDNNTWKLRCENMSPNYTTRI 408 Query: 416 SDLLRV 421 ++L V Sbjct: 409 GEILVV 414 >UniRef50_A6UXE7 Ultraviolet light resistance protein B n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6UXE7_PSEA7 Length = 360 Score = 316 bits (810), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 169/356 (47%), Positives = 225/356 (63%), Gaps = 5/356 (1%) Query: 66 GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRA 125 G V + D+S RV+ L EL+PR+E+YSIDE+F DL G+ R L +GR IRA Sbjct: 9 GPVLIDFLLHINGDVSARVVRVLRELAPRLEVYSIDESFLDLAGL--GRPLAGYGRHIRA 66 Query: 126 TVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVW 185 V + T + VGVGI+ TKTLAKLAN AAK+ R GVV + E+Q L+ P+ +VW Sbjct: 67 EVQRLTGMPVGVGISTTKTLAKLANWAAKR--RSQSGVVVATRPEQQAALLKDAPLGEVW 124 Query: 186 GIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQ 245 G+GR++ L A+G+KT DLA D +RK F+VVLE+T+RELRGE C L+E KQ Sbjct: 125 GVGRKLQAHLGALGVKTAWDLAQQDAWTMRKQFSVVLEKTIRELRGEACFALDEGPEPKQ 184 Query: 246 EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYG 305 I CSRSF R+T+ +R+A+ SYA RAAEKLR++ C+ + +I+T F +EP Y Sbjct: 185 MITCSRSFSRRVTELAPLREAVASYACRAAEKLRAQGDVCQLLQVYIRTGVFNPDEPRYA 244 Query: 306 NSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNA 365 +ASV L TP+ DSRD++ AA L+ I++ G+RYQKAGVML + S G Q +LF A Sbjct: 245 RTASVPLHTPSNDSRDLVQAALAGLEGIYRPGYRYQKAGVMLMNLASPGQVQADLFAP-A 303 Query: 366 PRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 PRP S LM +D +N GRGT+ A W MK+ + SP YT R +L RV Sbjct: 304 PRPRSAALMATVDRINTNMGRGTVRLARVPALGGWSMKQELRSPGYTCRWDELPRV 359 >UniRef50_Q2W5K5 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=6 Tax=Proteobacteria RepID=Q2W5K5_MAGSA Length = 425 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 179/427 (41%), Positives = 245/427 (57%), Gaps = 10/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N FY SCE F P L GKPV+V+SNNDGC +AR+AEAKA+GV MG+P FK + Sbjct: 3 VYALVDCNNFYVSCERAFNPALEGKPVIVMSNNDGCAVARSAEAKAIGVGMGEPAFKLRH 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L G++ SSNY LY DMS RVMS L SP EIYSIDE F DL G+ +LT + Sbjct: 63 LVDSHGLIMLSSNYALYGDMSERVMSVLATFSPGAEIYSIDECFLDLDGM-PVDNLTAWS 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ-RKLMSAL 179 +++RATV + T + V VGI TKTLAKLAN AKK ++ GV+DLS R + Sbjct: 122 QQVRATVRRWTGIPVSVGIGTTKTLAKLANRLAKK-SKKANGVLDLSRDARWIEAALKQT 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV DVWGIGR+ + GI+T DL +I+K V RTV ELRG P L+ Sbjct: 181 PVGDVWGIGRQYAALCGVNGIRTAFDLTLQPDGWIKKTMGAVGLRTVMELRGTPVHTLDT 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K CSRSFG +T++ + A+ ++A+RAAEK+R E + F T F Sbjct: 241 APSDKHTTCCSRSFGASVTEFEQVHDAVMTFASRAAEKIRGEGLVSGAVQVFAYTDRFRP 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++P + ++ ++L PT + II AA + L + W+ G+ Y+KAGV++ D + Sbjct: 301 DQPQFSLNSMIRLSPPTSSTPHIIGAALKGLKSAWRDGYEYKKAGVIMLDLVRPEDIPRD 360 Query: 360 LFDDNAPRPGS----EQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRS 415 LF +P P S LM +D +N K G+G + F W+M+ + +P +TT Sbjct: 361 LF---SPPPESGARPTALMAAVDGINGKMGKGAVGFGLVPDDAPWKMRCSNRTPSFTTSW 417 Query: 416 SDLLRVK 422 D+ VK Sbjct: 418 DDIPVVK 424 >UniRef50_A5GPY7 Bacterial UmuC protein homolog (SOS-regulated protein) n=14 Tax=Cyanobacteria RepID=A5GPY7_SYNR3 Length = 426 Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 176/422 (41%), Positives = 254/422 (60%), Gaps = 12/422 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FYASCE +F P L G+PVVVLSNNDGC++AR+ EA+ LG+ MG P+F+ D Sbjct: 5 LALIDCNNFYASCEQLFDPALQGRPVVVLSNNDGCIVARSREARQLGIAMGTPYFQVADR 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R VV SSNY LY DMS RVM+ L++ P +E+YSIDEAF L + +L+ + Sbjct: 65 LRDQQVVVRSSNYALYGDMSQRVMALLKQRVPELEVYSIDEAFARLPAL-PAHELSSWAA 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL---MSA 178 E+R V Q+ L + +G+A +K LAKLAN AK+ +TG + NL + +L ++ Sbjct: 124 ELRVLVRQQLGLPIALGMAPSKVLAKLANRLAKRDPARTG----VCNLLLEPQLPDRLAE 179 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 + V+D+WG+GRR+++ G+ T LDLA D IR+ + VV R +ELRG CL LE Sbjct: 180 VAVEDLWGVGRRLARWCRLRGLATALDLAQADSALIRQGWGVVGLRLQQELRGISCLALE 239 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 KQE SRSFG + D S+R+A+ ++ R AEKLR + Q ++ F++TSPFA Sbjct: 240 SEPAAKQETCVSRSFGTAVLDRLSLREAVAAHVVRGAEKLRRQGQRASRLTVFVRTSPFA 299 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 +Y NS SV L T D+ ++ A +D +++ G+ +QKAGV+LG Q Q Sbjct: 300 AG--FYANSISVSLPLATADTAVLLQRALPLVDQLFRHGYAFQKAGVLLGQLQPQEHLQH 357 Query: 359 NLFDDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSS 416 +L +P+ +L+ +D LN + G GT+ +A G++ W M+R LS +TT + Sbjct: 358 HLLVPCSPQQLRRRSRLLQAVDGLNQRFGTGTVQWAAVGVEPDWCMRRQHLSAHFTTSKA 417 Query: 417 DL 418 DL Sbjct: 418 DL 419 >UniRef50_Q3B3L9 DNA-directed DNA polymerase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B3L9_PELLD Length = 432 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 192/424 (45%), Positives = 257/424 (60%), Gaps = 8/424 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L G+PVVVLSNNDGCVIAR+ E+KALG+ MG P F+ +D Sbjct: 1 MFALADCNNFYVSCERVFNPMLCGRPVVVLSNNDGCVIARSEESKALGIAMGTPLFRCRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R GV FSSNY LY DMS+RVM+TL ++P E YSIDEAF DL+G R L + Sbjct: 61 VIGRHGVAVFSSNYPLYGDMSSRVMNTLGAMAPEQERYSIDEAFFDLSGFRRF-GLREHA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R TVL+ T + V +GIA TKTLAKLA AAKK GGV+ L +R R+ +++ Sbjct: 120 ALMRRTVLKHTGIPVSIGIAHTKTLAKLAAKAAKK-DPSCGGVLMLEGADRVRRALASTH 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGR+ S KL GI+T D A +R+ V + EL+G CL LE Sbjct: 179 LEDVWGIGRQWSLKLALQGIQTAADFAGMPPALVRRLLGVTGAKVQAELQGHRCLPLELV 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P KQ I SRSFG + +++A+ S+A+RAA KLR E ++ FI TSPFA + Sbjct: 239 RPMKQTICTSRSFGRNVFSVEELQEAVASFASRAASKLRREGSTASLLTVFISTSPFAAS 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ---GVAQ 357 S +V L D+ ++ AA+R L+AI+Q GH Y+KAGV+LG + G + Sbjct: 299 ALRREASRTVSLPRAADDAMTLVTAASRVLEAIYQGGHPYRKAGVLLGAIAPKNPPGESF 358 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 L D+ R +E L VM+ +N + G G++ A + + W+ +SPRYTT + Sbjct: 359 LLFGDEGEGR--AEALQQVMEQVNLRYGNGSIRLAAED-SRAWEPLCRHISPRYTTSWEE 415 Query: 418 LLRV 421 +LRV Sbjct: 416 ILRV 419 >UniRef50_Q15TC7 DNA-directed DNA polymerase n=25 Tax=Proteobacteria RepID=Q15TC7_PSEA6 Length = 421 Score = 313 bits (803), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 178/427 (41%), Positives = 248/427 (58%), Gaps = 12/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGV-KMGDPWFKQK 59 MFALCD N+ YASCE VF P + KPVVVL+NNDGC+ A AK +GV K P+F+ K Sbjct: 1 MFALCDANSMYASCEKVFDPSIRNKPVVVLTNNDGCICAACGIAKRMGVGKKFVPYFQVK 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFC----DLTGVRNCRD 115 GVV SSNYELYAD+S R+M T +P + +YSIDE F D T ++ Sbjct: 61 KELEAAGVVIRSSNYELYADLSQRMMDTCARFAPDINVYSIDECFLYYGKDATAPQD--G 118 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 + IR TV + L + VGI T TLAK+ANHAAK G V L N + ++ + Sbjct: 119 WNNLANSIRKTVWREVRLPICVGIGPTPTLAKVANHAAKNVSGFIGVAV-LDNEDARKHV 177 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + L V DVWGIG+R+ KL+A+GI T +LA+ D IRK F++++E TVREL GE Sbjct: 178 LKQLAVTDVWGIGKRLGVKLNALGIHTAWELANRDPSHIRKAFSIIVENTVRELNGEIRH 237 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E K+EI +RSFG R+TDY +R A+ +A + KLR + ++ F S Sbjct: 238 CWETVRGAKKEIYSTRSFGSRVTDYDELRAALAGHAETVSVKLRKQKSVTSSMTLFATNS 297 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 P N Y S + PT D+R+I++ ++ ++Q G Y K GV L D Q + Sbjct: 298 PHD-NGGYVRRSFFHRFTVPTNDTRNILHVIDSAMSQLFQPGVHYYKCGVGLMDLHEQDL 356 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRS 415 Q +LF+ P + +LM MD +N++ GR T+ A +G +Q++ MKRA LSP+YTT+ Sbjct: 357 YQYDLFN---PSNDNSRLMACMDNINSRYGRSTVQMAAKGFEQRFSMKRAFLSPQYTTQW 413 Query: 416 SDLLRVK 422 D+ ++K Sbjct: 414 RDIPKIK 420 >UniRef50_D2QVG5 DNA-directed DNA polymerase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVG5_9SPHI Length = 422 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 174/423 (41%), Positives = 248/423 (58%), Gaps = 3/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL D N FY SCE F P L G+PVVVLSNNDG ++AR+ E K L V MG P+F+ + Sbjct: 1 MIALADCNNFYVSCERSFNPSLNGQPVVVLSNNDGSIVARSNEVKKLNVGMGQPFFEIER 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDF 119 L + G+ FSSNY LY MS RVM+ VE+YSIDEAF DL G + DLT F Sbjct: 61 LRQEHGIHVFSSNYVLYGSMSARVMAIFGRFVEDVEVYSIDEAFFDLNGYESIYPDLTTF 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +R+TV+Q T + + +GIA TKTLAK+AN AK+ Q GV LS E+ R+ + L Sbjct: 121 AHNLRSTVMQWTRIPISIGIAPTKTLAKVANWYAKR-QPDASGVCMLSTPEQIRQALEQL 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 VD++WGIGRR + L GIKT L+ + +++KHF + R V ELRGE C +E Sbjct: 180 SVDELWGIGRRYASFLKQNGIKTALEFSQCHDVWVQKHFTINGLRLVYELRGEVCRTVET 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + + SFGE + D P++ +A+ +Y ARA+EKLR + ++ F+ T+ F Sbjct: 240 QPSARKSVCVAPSFGELVGDRPTLYEALTNYVARASEKLRKQRLAAGAMTVFLHTNRFRA 299 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y NS S L PT ++ + A ++LD+I+++G+ YQK G++L + Sbjct: 300 AVGQYSNSRSFTLPVPTNLIPELSHYAIKALDSIYKSGYAYQKVGLILSALQPDTHQTPD 359 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 +F+ P +L+ ++ LN+K GR + FA QG W+MK+ LSP YTT D++ Sbjct: 360 VFEGEL-DPRLLKLLPTVERLNSKLGRDKVRFAAQGFNHLWKMKQRWLSPCYTTHWKDII 418 Query: 420 RVK 422 K Sbjct: 419 ITK 421 >UniRef50_B7LX10 Protein impB n=4 Tax=Enterobacteriaceae RepID=B7LX10_ECO55 Length = 326 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 152/265 (57%), Positives = 194/265 (73%), Gaps = 4/265 (1%) Query: 152 AAKKWQRQTGGVVDLSNLERQR--KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADT 209 A K+W Q GVV L+ R R KL+ PV +VWG+GRR+++KL+A+GI T L LA Sbjct: 64 ATKQWP-QFSGVVALTAENRNRILKLLGLQPVGEVWGVGRRLTEKLNALGINTALQLAQA 122 Query: 210 DIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICS 269 + FIRK+F+V+LERTVREL GE C+ LEE P KQ+I+CSRSFGERITD +M QA+ Sbjct: 123 NTAFIRKNFSVILERTVRELNGESCISLEEAPPAKQQIVCSRSFGERITDKDAMHQAVVQ 182 Query: 270 YAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRS 329 YA RAAEKLR E QYCR ++TF++TSPFA+ EP Y N+A KL PTQDSRDII AA R+ Sbjct: 183 YAERAAEKLRGERQYCRQVTTFVRTSPFAVKEPCYSNAAVEKLSLPTQDSRDIIAAACRA 242 Query: 330 LDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 L+ +W+ G+RY KAGVML DF G+AQ LFD+ PR SE+LM +D LN + G+G + Sbjct: 243 LNHVWREGYRYMKAGVMLADFTPSGIAQPGLFDEIQPRKNSEKLMKTLDELN-QSGKGKV 301 Query: 390 YFAGQGIQQQWQMKRAMLSPRYTTR 414 +FAG+G +WQMK+ MLSP YTT+ Sbjct: 302 WFAGRGTAPEWQMKQEMLSPSYTTQ 326 >UniRef50_B9Z6P1 DNA-directed DNA polymerase n=2 Tax=Proteobacteria RepID=B9Z6P1_9NEIS Length = 435 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 181/427 (42%), Positives = 250/427 (58%), Gaps = 15/427 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FA D N FYA+CE VF P L G+PVVVLSNNDGCV++R+AEAK LGV MG P+F K Sbjct: 16 FAQVDCNNFYAACERVFNPALAGRPVVVLSNNDGCVVSRSAEAKRLGVPMGAPYFTLKGQ 75 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R GV FSSNY LY D+SNR M L + E+YSIDE F DL+G L R Sbjct: 76 LERQGVAVFSSNYALYGDLSNRAMRLLAGYARAQEVYSIDECFLDLSGEAEPLRLA---R 132 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP- 180 +R +LQ L VG+ +KTLAKLANH AK+ + GV+DL +L+ L P Sbjct: 133 RLRDALLQGLGLPACVGLGPSKTLAKLANHLAKQ-EAALEGVLDLGSLDATALLQRLEPV 191 Query: 181 -VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V++VWGIGRR+ ++L GI + LA+T+ ++++ F +V R ELRG CL LE Sbjct: 192 AVEEVWGIGRRLGERLRLAGIGSARQLAETERDWLQRRFGLVTARIADELRGVSCLALES 251 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ ++ +RSFG ++T +++A +A+R AE+LR + F+ I++ Sbjct: 252 LLEPRRSVMSTRSFGRKVTALAELQEAAAMHASRVAERLRRQGSLAHFLRVGIRS----- 306 Query: 300 NEPYYGN----SASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 P +G S +V LL P+ DSR + AA +++ +WQ G RY KAGVM + G Sbjct: 307 GVPGWGRGGDASETVALLPPSNDSRVLARAAQQAVARLWQRGVRYHKAGVMAFELVDAGQ 366 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRS 415 Q +LF + S +LM MD +N + GRGT+ +G +Q W+MK+ LSP YTTR Sbjct: 367 VQADLFAGDPLDAKSARLMQAMDAINQRMGRGTVRLLAEGTKQPWRMKQDHLSPCYTTRW 426 Query: 416 SDLLRVK 422 D+ VK Sbjct: 427 DDIPVVK 433 >UniRef50_A9W7Y3 DNA-directed DNA polymerase n=10 Tax=Rhizobiales RepID=A9W7Y3_METEP Length = 478 Score = 307 bits (786), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 189/425 (44%), Positives = 239/425 (56%), Gaps = 12/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N+FY SCE VF L PV+VLSNNDGC IAR EAKALG+KMGDP+FK + L Sbjct: 53 LALIDGNSFYCSCERVFDAKLARVPVIVLSNNDGCAIARTPEAKALGIKMGDPYFKIRGL 112 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFG 120 GV FSSNY LY DMS R+ + + +P VEIYSIDE+F DLT VR RD Sbjct: 113 CEHQGVRVFSSNYTLYGDMSARINAIYRDATPDVEIYSIDESFLDLTAFVR--RDRVALA 170 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+IRATV T + VGI TKTLAKLANH AK + GV DL+ + L Sbjct: 171 RDIRATVRAWTGIPTCVGIGPTKTLAKLANHIAKTVP-ELDGVCDLTEPAAYEHWLCRLH 229 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V ++WG+GR KL+AMGI TV DL D D R +RK VV ER + ELRG CL L+ Sbjct: 230 VGELWGVGRASLPKLEAMGIDTVADLRDIDPRPVRKALTVVGERMIHELRGVSCLGLDLV 289 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ +RSF R+T+ + QA+ ++A R EKLR E I+ F TS Sbjct: 290 PARRKGCAVTRSFSGRVTERAELEQAVAAHAIRLGEKLRREGLGTDHITVFYHTSEHDRG 349 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGH---RYQKAGVMLGDFFSQGVA 356 EP S V L T D+ +I AA + W + G+ RY KAGV+ D + Sbjct: 350 EPMRSVSTVVTLPEATNDTLALIPAALHGMARTWREQGNPPWRYSKAGVVTVDLVPLAAS 409 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ---WQMKRAMLSPRYTT 413 Q L R +++LM +D NA+ GRG++ A G+ QQ W K M +PRYTT Sbjct: 410 QRALI-GRLDRERADRLMGALDACNARFGRGSVVPARAGLAQQRRTWTTKFEMRTPRYTT 468 Query: 414 RSSDL 418 R+ +L Sbjct: 469 RADEL 473 >UniRef50_A6WU94 DNA-directed DNA polymerase n=28 Tax=Gammaproteobacteria RepID=A6WU94_SHEB8 Length = 418 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 180/423 (42%), Positives = 252/423 (59%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY S E VFRPD GKP++VLSNNDGC++A N +AK GV P+F+ KD Sbjct: 1 MFALVDANSFYCSAEQVFRPDWRGKPMIVLSNNDGCIVAANKQAKERGVPKFAPYFQVKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDF 119 L + GV+ SSNYELYAD+S ++M+ + +P +YSIDE+F + L Sbjct: 61 LCTKLGVIVCSSNYELYADLSAKMMNIIGRFAPEQHVYSIDESFLSFKNSYPAIKCLQAQ 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G+ IR V + T L V VGI T TLAK ANHAAKK GV + N + + ++ ++ Sbjct: 121 GQLIRKAVWKETRLPVCVGIGSTLTLAKAANHAAKKLPGYQ-GVCAIDNEQDRISILQSM 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V+DVWGIGRRISKKL+ M ++T DLA RK F++ +ERTVREL G+ C +E Sbjct: 180 SVNDVWGIGRRISKKLELMNVRTAYDLAKIPAGLARKQFSIEIERTVRELNGQACKVWDE 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K++I +RS GERIT+Y + QA+ + A AA K R + C+ + F SP+ Sbjct: 240 ARADKKQIFSTRSVGERITEYEDLLQALSKHVAIAAAKARKQGSSCKTMLLFASNSPY-- 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +E G V T S ++I T++ +++AG RY K GV L D S QL+ Sbjct: 298 DERPTGFKTLVHFACATDCSIELIQGMTQAASQLFRAGVRYYKVGVGLIDLVSTQHGQLD 357 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LF+ + +P LM +D +N + G TL+ A QGI+Q+W M+R +L+P+YTT+ L Sbjct: 358 LFNVSKAKPA---LMKTLDGINQRYGTDTLFIAAQGIEQKWAMRRDLLTPQYTTKWKCLP 414 Query: 420 RVK 422 +K Sbjct: 415 EIK 417 >UniRef50_C8X192 DNA-directed DNA polymerase n=2 Tax=Deltaproteobacteria RepID=C8X192_DESRD Length = 437 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 178/420 (42%), Positives = 239/420 (56%), Gaps = 5/420 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N FY SCE VF P L G+PVVVLSNNDGC+IAR+ EAK LG+ MG+P+ K++ Sbjct: 17 VYALVDCNNFYVSCERVFAPRLQGRPVVVLSNNDGCIIARSEEAKTLGIAMGEPFHKREP 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR GV FSSNY LY DMS RVM L +P EIYSIDE F + DL Sbjct: 77 FLRREGVNVFSSNYPLYGDMSARVMEALSRFTPHQEIYSIDECFLGFVPAPDA-DLLCTA 135 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR TV Q T + V VG+A TKTLAK+AN AKK + V L + + ++ Sbjct: 136 RHIRETVRQWTGIPVSVGLAPTKTLAKIANRCAKK-DPASKNVCLLGDTTTIEQTLARTD 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+D+WGIGRR ++ L G+ T LDL ++R H VV +TV EL +PC LE Sbjct: 195 VEDIWGIGRRYARFLHTRGVDTGLDLVRMPRDWVRNHLTVVGLQTVLELDRQPCFVLETT 254 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I+CSRSFG RI D ++ +A+ + RAAE+LR++ + ++T+ F Sbjct: 255 PAPAKSIVCSRSFGRRIRDKQALGEALARHIQRAAERLRAKGLLAHTVRVALETNRFQPG 314 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y LL PT + + AA LD ++++G YQK GV L + Q +L Sbjct: 315 -PQYAARRCQTLLHPTDATPALHKAAQGLLDVLYRSGFAYQKIGVTLLELVPHNHRQASL 373 Query: 361 FDDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDL 418 F A G ++ LM +D LN GR T+ +A G+ QQW M++ +SPRYTT +L Sbjct: 374 FPPAAAETGRQRDLMRTVDHLNTVYGRDTVTWAASGLGPQQWHMRQNHVSPRYTTAWDEL 433 >UniRef50_C0VGI8 Nucleotidyltransferase/DNA polymerase n=4 Tax=Acinetobacter RepID=C0VGI8_9GAMM Length = 432 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 177/428 (41%), Positives = 253/428 (59%), Gaps = 10/428 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL DVN Y SCE VF P L +PVVVLSNNDGCV++R+ EAK LG++M P+F+ ++ Sbjct: 7 IFALVDVNNAYVSCERVFNPKLENRPVVVLSNNDGCVVSRSYEAKQLGIRMAVPFFQIEE 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEE-LSP-RVEIYSIDEAFCDLTGVRNCRDLTD 118 + R+ V FSSNY LYA+MS R M+ L + P E+YSIDE F +LT ++ DL+ Sbjct: 67 IIRQHHVAVFSSNYALYAEMSRRFMNILASFVDPCEQEVYSIDECFLELTAYQHHYDLSK 126 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG--GVVDLSNLERQRKLM 176 + +I +TV + L +GI +KT AKLANH AK G VD + LM Sbjct: 127 YAFQILSTVKKWLGLPCCIGIGYSKTQAKLANHLAKTHASFNGVCNFVDEDPCIIEDLLM 186 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 PV +VWG+GR+I ++L+ M I +V+DL TD + + KHF+VVLE TV+EL+G CL+ Sbjct: 187 HT-PVGEVWGVGRKIRQRLEKMNIYSVMDLLQTDPKRMGKHFSVVLENTVKELQGVACLE 245 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 +E+ +Q+I+ SRSFG+ I D S+ A+ +A RA E+LR + C+ + I+T+ Sbjct: 246 IEDVISDRQQILSSRSFGQPIEDKNSLSGALTEFALRAVERLRKQKLLCKAVGISIRTNR 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F + YY V L+ + D I+ A + LD I+Q GHRY+KA V+L D Q Sbjct: 306 FN-KDAYYRPFTVVYLVDYSDDRLVIMKAVQQGLDRIYQVGHRYKKAEVILLDIIPQHRH 364 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ---WQMKRAMLSPRYTT 413 ++LF + + L D +N + GR + F G+ I Q W M + SP Y T Sbjct: 365 AVDLFYNTEEMLTRQNLSVAFDEINERFGRDVMTF-GRLIGPQGRAWGMTQNHKSPSYLT 423 Query: 414 RSSDLLRV 421 + D+LRV Sbjct: 424 KWEDVLRV 431 >UniRef50_Q30X29 DNA-directed DNA polymerase n=8 Tax=Proteobacteria RepID=Q30X29_DESDG Length = 492 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 182/432 (42%), Positives = 248/432 (57%), Gaps = 20/432 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N+FY SCE VFRPDL +PVVVLSNNDGC+IAR+AEAKALG+ MG PWFK + Sbjct: 53 LYALVDCNSFYVSCERVFRPDLVRRPVVVLSNNDGCIIARSAEAKALGIPMGAPWFKVRR 112 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-- 118 GV FSSNY LY DMS+RVM LE P V +YSIDEAF L + ++ Sbjct: 113 HAESAGVTVFSSNYALYGDMSSRVMRVLERFCPDVHVYSIDEAFMRLDSLIMPPGMSPER 172 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVD------------- 165 + +R V +RT + V VG+ TKTLAKLAN +K+ +V Sbjct: 173 YAACLRREVYRRTGIPVSVGLGCTKTLAKLANRLSKQQNAGARAMVPAAFRYAGVFNFGA 232 Query: 166 LSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERT 225 +++ + L+ L V DVWG+G R + +L GI+T L D +R++ +V T Sbjct: 233 VTDPDVMDALLETLDVTDVWGVGARHAGRLRTWGIRTARALRDAPDDRVRRYMSVTGLHT 292 Query: 226 VRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYC 285 V ELRG CL L++ P+++ ++ SRSFG +T M +A+ +Y RAAEKLR E Sbjct: 293 VLELRGISCLPLDDAPPSRRSVVSSRSFGTLVTHKEHMLEAVTAYMTRAAEKLRREQLEA 352 Query: 286 RFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGV 345 + I T P + P Y +SA V+L PT + +I A L++IW+ G+RYQKAGV Sbjct: 353 HCVGVMIST-PRHGDGPRYADSAQVQLAVPTSHTPQLIVRARALLESIWRDGYRYQKAGV 411 Query: 346 MLGDFFSQGVAQLNLFDD-NAPRPGSE---QLMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 ML S Q+++ G E +LM D +NA+ GRGTL +A G+ + W Sbjct: 412 MLSGLESAVSRQVSMLPALQGTGRGLERGRRLMAAADAVNARFGRGTLEYAAAGLGRPWS 471 Query: 402 MKRAMLSPRYTT 413 MK+ LSPRYT+ Sbjct: 472 MKQEHLSPRYTS 483 >UniRef50_Q2P505 Polymerase V subunit n=4 Tax=Xanthomonadaceae RepID=Q2P505_XANOM Length = 428 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 182/432 (42%), Positives = 245/432 (56%), Gaps = 17/432 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASCE VF+P+L G+P+VVLSNNDGC IAR+ EAKALGV MG P K Sbjct: 1 MFALIDGNNFYASCERVFQPELRGRPLVVLSNNDGCAIARSDEAKALGVTMGQPIHKVPT 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR + S+N+ LY D+++R+ L + +PRVE+YSIDE+F DL G+R+ R L Sbjct: 61 QIRR-RLALRSANFGLYGDIASRIGVILRQAAPRVEVYSIDESFLDLAGIRDRRQLA--- 116 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG-------GVVDLSNLERQR 173 ++R V Q T + +GIA TKTLAKLAN AK R+ G GV DL+ L Sbjct: 117 VDLRERVYQWTGIPNCIGIAPTKTLAKLANRVAKDAARKPGSYPADLAGVCDLAALSASE 176 Query: 174 --KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 ++ A V D+WG+GRR S +L A G+ T DL D + F VV+ R REL+G Sbjct: 177 LDAVLRATSVGDLWGVGRRWSARLQARGVYTAADLRDAAADDLLAEFGVVMARAQRELQG 236 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 CL+LEE P +Q+I+ SRSFG +++ M +A+ ++A RA EKLR+ I F Sbjct: 237 HACLELEEVEPDRQQIMVSRSFGTWVSNPQDMSEALATFAMRATEKLRARGLTSSAIGIF 296 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 T F P + S + L + T DSR ++ R + G Y+KAGV L D Sbjct: 297 ADTDSFKPGVPQHNPSRTAPLASATSDSRIVLTTVRRLFQGFMREGFAYKKAGVCLMDLA 356 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ--QWQMKRAMLSP 409 Q +LF R G E+LM+ +D +N + GRGT G Q W ++ +LS Sbjct: 357 KPEDLQGDLF--TPARIGHEKLMSALDAINRRFGRGTAGLGASGWQNSPSWASRQELLSG 414 Query: 410 RYTTRSSDLLRV 421 R+TT +DL R Sbjct: 415 RFTTSLADLPRA 426 >UniRef50_B8DRU5 DNA-directed DNA polymerase n=13 Tax=Proteobacteria RepID=B8DRU5_DESVM Length = 497 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 186/430 (43%), Positives = 248/430 (57%), Gaps = 23/430 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +AL D N FYASCE +FRPDL GKP+VVLSNNDGC+I+R+ EAKALGV+MG P FK + Sbjct: 62 WALVDCNNFYASCERLFRPDLRGKPIVVLSNNDGCIISRSDEAKALGVEMGAPAFKVRRE 121 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R GV FSSNY LY D+S+RVM TL LSP V++YSIDEAF L G D GR Sbjct: 122 LARLGVHVFSSNYALYGDLSSRVMRTLGTLSPEVDVYSIDEAFLPLRGPLAA-DPVAVGR 180 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK------- 174 +R V + T + + VGIA T+TLAK+A AK+ R GV DL+ R R+ Sbjct: 181 ALRERVARWTGIPISVGIAPTRTLAKIAGRVAKRTPRCE-GVFDLA---RSREVLGMSVD 236 Query: 175 -LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 L+ +LPV+ VWG+GRR++ L GI T L D ++R+ +V RTV ELRG P Sbjct: 237 DLLGSLPVESVWGVGRRLAGMLRGAGIATARALRDAGDDWVRRRMSVTGLRTVLELRGLP 296 Query: 234 CLQLEEFA--PT-KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 C+ EE P+ + ++ SRSF RI D +R+A+ ++AA A KLR ++ Sbjct: 297 CIGAEEQGEPPSPRHTVVSSRSFAGRIADVAMLREALATHAALAGAKLRRAGLVAGGLAV 356 Query: 291 FIKTSPFALNEPYY-GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 ++T+ +S ++ L PT DS I A LD +++ G+ Y KAGVML Sbjct: 357 HVRTARHDEQAALRCDDSVALPLPVPTADSAVFIRLAHEGLDRVFRPGYPYAKAGVMLYG 416 Query: 350 FFSQGVAQ---LNLFDDNAPRPGS-EQLMTVMDTLNAKEGRGTLYFAGQGIQQQ--WQMK 403 Q L L D A R + E+LM V D +NA+ GRG L A +G+ + W M+ Sbjct: 417 LERADTRQGSLLALADGTAERDAARERLMAVADRINARYGRGKLRHAAEGLDAEAPWHMR 476 Query: 404 RAMLSPRYTT 413 + SPR TT Sbjct: 477 QKHRSPRRTT 486 >UniRef50_B6BWB3 DNA-directed DNA polymerase n=1 Tax=beta proteobacterium KB13 RepID=B6BWB3_9PROT Length = 414 Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 165/420 (39%), Positives = 245/420 (58%), Gaps = 10/420 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL DVN FY SCE VF L PVVVLSNNDGC+I+R+ EAKALG+KMG P+F+ +D Sbjct: 1 MIALVDVNNFYVSCERVFNRSLEYVPVVVLSNNDGCIISRSNEAKALGIKMGMPFFQAQD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V +SSNY LYADMSNRVM L LS EIYSIDE+F + N ++ G Sbjct: 61 LIKKNNVHVYSSNYPLYADMSNRVMQLLAHLSQDQEIYSIDESFLKI----NQKNYLLHG 116 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGV-VDLSNLERQRKLMSAL 179 + IRAT+L+ L V VG A+TKTLAKLAN+ AKK+ G V SN + KLM + Sbjct: 117 QHIRATILKNVGLPVCVGFAKTKTLAKLANYMAKKYPMFNGVVCFSESNPKTLTKLMCEI 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++WG+G R+ K+L+ +GI TV DL + +++++ F++ +ER V EL C +E Sbjct: 177 SVGELWGVGVRLKKRLNELGILTVHDLKTANAKWMKQMFSINIERMVYELNDIQCYPIES 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +++I+CSRSFG++I Y M A+ ++ RA+ KLR + + ++ F++ +PF+ Sbjct: 237 IKPDQKQIVCSRSFGQKINRYEDMADAVATFVQRASIKLRKQQLTAKQMTLFMRNNPFS- 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++ + ++ T + ++ A L+ I+ G Y KAG++LGD N Sbjct: 296 SKHRMQHVIRLQHYDYTDSHQQLLRLAMHGLEKIYHQGIDYHKAGIILGDLRRAT----N 351 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 L D + +P L +D + K + Q +W M++ S ++TT +LL Sbjct: 352 LNQDYSAKPEGHHLSNTIDAIRDKYHANIIMSGWQSKDGKWHMRQLNKSLKFTTSWLELL 411 >UniRef50_Q3AKE9 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q3AKE9_SYNSC Length = 424 Score = 297 bits (761), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 178/427 (41%), Positives = 238/427 (55%), Gaps = 16/427 (3%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FYASCE P L G+PVVVLSNNDGC++AR+AEA+ALG++MG P+FK + Sbjct: 6 ALIDGNNFYASCEQSLDPALIGQPVVVLSNNDGCIVARSAEARALGIRMGTPYFKARREL 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R VV SSNY LYADMS R+MS LE +E+YSIDEAF + RN DL + R+ Sbjct: 66 ERHNVVVRSSNYALYADMSQRMMSLLEAHCEELEVYSIDEAFGRIRRPRNG-DLQGWARQ 124 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +RA Q L + +G+ +K AKLAN AK+ G+ DL + + + + ++ Sbjct: 125 LRARARQNLGLPIAIGLGASKAQAKLANRLAKQ-APDHAGMFDLGQCDNPDRWLETIAIE 183 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 DVWGIGR+++ GI L D +R VV R RELRG CL LE Sbjct: 184 DVWGIGRQLAHWCRLRGISNARHLRDMPSGELRAKCGVVGLRLQRELRGHACLPLELAPA 243 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 KQE SRSF IT + QAI +Y RAAEKLR + Q ++ + +TSPFA Sbjct: 244 PKQETCVSRSFSRPITSQEELHQAIATYVVRAAEKLRKQRQRAAALTIYTRTSPFAPG-- 301 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 +Y +AS +L P+ D+ ++ AA + I++ + KAGV+ S + Q +L Sbjct: 302 FYSQAASTQLDLPSNDTAVLLQAARPLVARIFRPHRQLAKAGVLTQHLQSHNILQTHLMV 361 Query: 363 DNAPRPGSEQ-------LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRS 415 P SE+ LM +D +N + GRGTL +AG G+Q W M+R LS TTR Sbjct: 362 -----PMSEEQQQKRECLMQTIDRINRRYGRGTLQWAGCGLQPSWLMRREQLSRAATTRL 416 Query: 416 SDLLRVK 422 DL VK Sbjct: 417 QDLPVVK 423 >UniRef50_UPI0000E87FBE DNA repair protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FBE Length = 419 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 167/423 (39%), Positives = 239/423 (56%), Gaps = 8/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL DVN FY SCE +F P L KPVVVLSNNDGC+I+R+ EAK LG+KMG+P FK Sbjct: 1 MIALVDVNNFYVSCERLFNPYLINKPVVVLSNNDGCIISRSQEAKNLGIKMGEPLFKASA 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R+ V SSNY LYAD+S RVMS L + + EIYSIDE F D+ G N L D Sbjct: 61 IIRQHQVQVLSSNYPLYADISARVMSLLSDFTSTQEIYSIDECFLDMEGHEN---LQDIA 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSA 178 R+I+ + + + V VGI TK LAKLAN AKK Q Q GV +SN +M Sbjct: 118 RKIKRLLWRYLRMPVCVGIGPTKVLAKLANRCAKK-QDQQSGVFIISNASASELNNMMDD 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L VD +WG+G+ ++ KL I ++LDL ++ ++RK F + +ER + EL G CL ++ Sbjct: 177 LSVDQIWGVGKALAVKLQKKSIYSILDLKQSNPTWVRKFFGINMERIIYELNGVSCLLID 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 K+ I CSRSFGE + DY + +A+ +++ RAA K RS++ ++ F+ T+PF Sbjct: 237 NQYVAKKGIRCSRSFGENVNDYIRLAEAVTTFSGRAALKARSQNTGTNAVTVFLSTNPFN 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 +Y ++ ++ L T + I+ AA L I++ Y K GV+L Sbjct: 297 KEHRHYQDAITMPLEQLTNQTNLIVKAALSGLRKIYKQKVTYSKCGVILNSLEELDKLSY 356 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 L R + L ++D +N K + +L+ A Q + W M+++ S Y+T S+L Sbjct: 357 PLISPIHNRQAN--LTKIIDEINNKFDKNSLHIAFQPLYPSWDMRQSYRSQSYSTSWSEL 414 Query: 419 LRV 421 L V Sbjct: 415 LLV 417 >UniRef50_B2FJL0 Putative UV protection and mutation protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FJL0_STRMK Length = 429 Score = 295 bits (754), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 182/429 (42%), Positives = 248/429 (57%), Gaps = 18/429 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY S E F P L G+PV V S+ DGCVIAR+A +K LGV MG P Q Sbjct: 11 IALQDGNNFYCSVEASFDPRLRGRPVCVASSGDGCVIARDALSKKLGVPMGAP-IHQIPP 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R + S+N+ LY D+S R+ S L +L P +E YSIDE F DL G+ + +D Sbjct: 70 NVRWQITFRSANFALYGDISTRIASILRDLFPAIEQYSIDENFIDLAGIPS-KDHERLAA 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E RA +L+ T + VGI TKTLAKL+N AK GVV + + L++ PV Sbjct: 129 EARARILKWTGIPSCVGIGPTKTLAKLSNKRAKS---TVEGVV--TTMPDDPALLT-YPV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D WG+GR+++ +L A GI T DLA D+ +R + VV+ RT REL+G C LEE Sbjct: 183 EDDWGVGRKLTARLGADGILTAGDLAAADVDTLRSRYGVVMARTQRELQGISCADLEEHE 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++EI+ SR+FG+ IT + QAI ++A RA EKLRS + FI+T+PF N Sbjct: 243 AQRKEIMVSRTFGKDITSQTELMQAIATFAQRACEKLRSRQLQAAGVWVFIQTNPFKQNL 302 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y S S +LL P+ D+R+I+ A A+++ G+ Y+KAGV L D V Q +LF Sbjct: 303 PQYNPSKSFRLLMPSADTREILMVAQGLAKAMFRPGYGYKKAGVSLLDLIHMDVQQGDLF 362 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA-------GQGIQQ-QWQMKRAMLSPRYTT 413 R S+ +M VMD N K GRG++ FA G+ +++ W +KR MLSP YTT Sbjct: 363 AGIDQR--SKAIMEVMDRTNQKFGRGSMGFAFTAWRPSGKTLEKPAWSVKRDMLSPAYTT 420 Query: 414 RSSDLLRVK 422 L+RV+ Sbjct: 421 DWKQLIRVR 429 >UniRef50_D1VXB9 Putative DNA polymerase V subunit UmuC n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VXB9_9BACT Length = 440 Score = 294 bits (752), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 172/433 (39%), Positives = 259/433 (59%), Gaps = 16/433 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +A+CD ++ Y SCE VFRPDL KPVVVLSNNDGCV+AR+ EAK +G+ G P+++ K+ Sbjct: 12 YAICDCDSCYVSCERVFRPDLKHKPVVVLSNNDGCVVARSKEAKRMGIPAGMPYYQLKEQ 71 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + + FSSNYELY +++ RVM + E SP+ YSIDE FC L + + DL +G Sbjct: 72 YHDNEIAVFSSNYELYGELTARVMQLIREASPQSVRYSIDECFCVLPDM-SFTDLKQWGE 130 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQ-RQTGGVVDLSNLERQRKLMSALP 180 + +L+ T + + +GIA TKTLAK+A+H AKK++ Q ++D E++ K + P Sbjct: 131 SLCHRILKYTGMPISIGIAHTKTLAKMASHYAKKYEGYQHCCIIDTD--EKRTKALQQYP 188 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + +VWGIGRR + KL++MGI++ D A D +IR F VV RT +EL GE C+ ++E Sbjct: 189 ISEVWGIGRRHATKLESMGIRSAYDFAMHDKSWIRSLFTVVGMRTWQELWGEDCVPIDEM 248 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSF + +Y ++R I ++AAR A KLR + +S F+ T+ F + Sbjct: 249 TH-KKSICTSRSFTGMLAEYDAVRTHIANFAARCAYKLRQQQSVASVVSVFVHTNRFRED 307 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y NS SV+LLTP+ ++ I+ AA + L I+ +G++Y+KAGV++ S Q N Sbjct: 308 LDQYWNSTSVQLLTPSNSTQVIVQAAAQGLQHIFASGYQYKKAGVVVMGLQSDAAIQTNF 367 Query: 361 FDDNAPRPGSE-QLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML----------SP 409 D +A + +L V+D LN G T+ Q +Q+ Q +A++ S Sbjct: 368 LDFHATQMEKHIKLDQVVDRLNKLMGTETVKLGAQQYKQKQQNGKAIVFADAIQHVFKSK 427 Query: 410 RYTTRSSDLLRVK 422 TTR SD++ +K Sbjct: 428 NPTTRWSDIMELK 440 >UniRef50_D1R5W7 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W7_9CHLA Length = 421 Score = 294 bits (752), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 165/421 (39%), Positives = 243/421 (57%), Gaps = 8/421 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D N FY SCE + P L KPV+VLS NDGCVI+R+ EAK LG+KMG+P+FK K+ Sbjct: 4 FVLADCNNFYVSCERMLHPKLEEKPVIVLSQNDGCVISRSQEAKQLGIKMGEPFFKVKEY 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R V+ +SSNY+LY D+S RVM++L + +P ++IYSIDEAF + ++ Sbjct: 64 CERAKVIVYSSNYQLYGDISERVMNSLSQFAPEMQIYSIDEAFLKFPITLSDEEMFAECM 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ + + + + +GIA TKTLAK+AN AK Q + GV L+ + ++ P+ Sbjct: 124 RIKKLIKKWVGIPISIGIAPTKTLAKVANSLAK--QNRDLGVFSLNEPLSREAILKEYPI 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +DVWGIGRR+SK+L +GI TV D F+RK VV ER + EL+G L LEE + Sbjct: 182 EDVWGIGRRLSKRLKGIGILTVWDFIQLTPYFVRKTMGVVGERMLLELQGISALDLEESS 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN- 300 P KQ I SRSFG ++TD + +A+ ++ ++A KLR + QY + +++ F+ + Sbjct: 242 P-KQSITFSRSFGRKVTDISELGEALATFVSKACVKLRKQKQYAAALLVYLQF--FSQDG 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E GN +PT D+ ++I A + L ++ +Y+K GV+L D S +L Sbjct: 299 ESLQGNHMIYSFPSPTDDTIEMIAATKQCLTKLYIDKKKYKKCGVILLDLKSAEQFMPDL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F P +Q+M MD LN + + T++ G GI Q W+ + SP Y T S D L Sbjct: 359 FQ-KGPDIKRQQVMRAMDKLNTRLKKRTVFLGGTGIHQDWKSRSDQRSP-YNTTSWDHLP 416 Query: 421 V 421 + Sbjct: 417 I 417 >UniRef50_D0Z2K2 Error-prone repair protein UmuC n=5 Tax=Photobacterium RepID=D0Z2K2_LISDA Length = 430 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 168/421 (39%), Positives = 241/421 (57%), Gaps = 6/421 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D FY SCE +F P L GKP+VVLSNNDGC +A + +AKALG+ G PWFK + Sbjct: 8 VWALVDAKNFYCSCEQLFDPSLVGKPLVVLSNNDGCCVAISQQAKALGIVRGVPWFKIQR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV SSNY LYADMS R + L SP VE YSIDEAF L G + +L D+G Sbjct: 68 EAIQQGVQVRSSNYTLYADMSRRFIEELSRFSPHVEQYSIDEAFIRLDGFQ-LNELADYG 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIR T+L+ L V VGI T TLAKL NHAAK +++Q GV+ + R++ L+ P Sbjct: 127 REIRTTILKNIGLPVRVGIGATPTLAKLGNHAAKVYEKQVRGVIQIDTEHRRQWLLERTP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + D+WGIG + + +L GI+ LA D IR+ +NV L RTV EL+ C+ + Sbjct: 187 IQDIWGIGAKTATRLRTAGIQNGWQLAQQDSIDIRRLWNVTLARTVLELQQISCISPGDV 246 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +++I+ SR+FG+ I + A+ + RA EKLR + + F++T+ + Sbjct: 247 EEKRKQILSSRTFGQGINQLDELNAALAFHCQRAGEKLRKQQSQTGVVGVFLRTNKHK-S 305 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQGVAQL 358 P + SA + L++ TQD+ I+ A L+ I++ G+ Y K GV+L + QL Sbjct: 306 LPQHHRSAVMPLISATQDTYRILEVAQALLNEIYRGGYEYYKVGVILEQLTDVTDDAIQL 365 Query: 359 NLFDDNAPRPGS-EQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 ++FD +A +LM V D +NA+ G + A W M++A S R+TTR + Sbjct: 366 DMFDSSALYESKRRELMAVADRVNARYKNG-IKPASIISSTNWHMRQAHRSNRWTTRLDE 424 Query: 418 L 418 L Sbjct: 425 L 425 >UniRef50_C6NU08 Error-prone repair protein UmuC n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU08_9GAMM Length = 424 Score = 291 bits (744), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 161/416 (38%), Positives = 242/416 (58%), Gaps = 9/416 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE +F+P L GKPVVVLSNNDGC +AR+ EAKALGV MG P+F+ + L Sbjct: 3 LALVDANNFYVSCERLFQPRLEGKPVVVLSNNDGCAVARSNEAKALGVTMGAPYFQWEKL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ G+V SSNY LY ++S R+M L + EIYSIDE+F ++ D + + Sbjct: 63 AKQHGIVVLSSNYALYGELSARLMRLLGNQAVGQEIYSIDESFLEVPVADAEAD--SWAQ 120 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ--RKLMSAL 179 +R + ++ L V VG+A TKTLAK+ NH AKK +R GV +L+ Q R+ Sbjct: 121 HLRQQIRRQLGLPVCVGVAPTKTLAKVCNHWAKK-ERTAEGVCIWGDLDPQQRRQWFHET 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV D+WG+GRR++ +L+A G+++ DLA TD R++R+H+ V L R +ELRG PCL LEE Sbjct: 180 PVGDLWGVGRRLAARLEAQGVQSAGDLARTDSRWLRQHYGVALARMQQELRGVPCLSLEE 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +P +Q+I CSRSFG +T++ + +++ + R EKL + + + +++SPF Sbjct: 240 VSPPRQQIQCSRSFGRAVTEFSDVLESLSLHTQRGIEKLHEQALWAGSVQVMVRSSPF-- 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 E +Y +A +L P++D R + A + +Q G YQK+G++L D +Q Sbjct: 298 REGFYSGTAHRRLPEPSRDYRVLWEAVRSAAAEAFQPGVSYQKSGILLFDLQAQARTGDL 357 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ--QWQMKRAMLSPRYTT 413 +E+L + + G+ TL G++Q W M+ SP Y + Sbjct: 358 FAVQEGGEERAERLQEALQRAQDRFGKHTLARGVGGLRQGRDWAMRSDRRSPSYLS 413 >UniRef50_UPI0001C34BBE DNA-directed DNA polymerase n=3 Tax=Neisseria subflava NJ9703 RepID=UPI0001C34BBE Length = 344 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/345 (45%), Positives = 214/345 (62%), Gaps = 7/345 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY SCE VFRP+L P+VVLSNNDGCV+AR+ EAKALG+KMG+P+F+ K Sbjct: 1 MFALIDGNSFYCSCERVFRPELKNVPIVVLSNNDGCVVARSTEAKALGIKMGEPYFRVKH 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + +SSNYELYAD+S R+M T+ P VE+YSIDE F D++G+ N LT+ G Sbjct: 61 LVSQGRLKAYSSNYELYADLSRRMMETIAGCVPAVEVYSIDECFADMSGIEN---LTELG 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV---DLSNLERQRKLMS 177 +IR VLQ + VGIA TKTLAK NH AK++ GVV D + R R L S Sbjct: 118 CQIRQRVLQWVGIPTCVGIAPTKTLAKFCNHLAKRYPDHFRGVVVWGDWNETIRLRALRS 177 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 VD++WGIGRR + KL GI+T LD + D IR+ + V +ERT RE++G C L Sbjct: 178 Q-GVDEIWGIGRRTADKLSEQGIRTALDFVEADTATIRRRYGVTVERTQREMQGIVCDGL 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 A +Q ++ SRSFG RI +++ A+ + + AE LR + +S F+ T F Sbjct: 237 HPNAQPRQNLVRSRSFGTRIETLEALQAAVTHHVSLGAEALRKDGLTASAVSVFLHTDFF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQK 342 +EP Y NS + L+ T D+ + A R L I+++G+ Y+K Sbjct: 297 REDEPQYHNSLAQNLIVSTADTVHLNRIAQRLLADIYRSGYLYKK 341 >UniRef50_C9LED2 UmuC protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LED2_9BACT Length = 422 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 162/423 (38%), Positives = 239/423 (56%), Gaps = 3/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N+F+ S E F P L GKPV VLS+NDG ++A EAK +G+K GDP FK +D Sbjct: 1 MWALADCNSFFCSVEKAFHPGLRGKPVCVLSSNDGNIVALTPEAKKIGIKRGDPVFKVRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V FS+N +LYA MS RV + L + VE YSIDE+FC L G D+ +F Sbjct: 61 LISCHNVKLFSANMKLYAAMSRRVTNMLRKRIHHVENYSIDESFCCLDGYEQLYDMENFM 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REI V T + + VGIA +KTLAK+ + AK++ + V + E++RK ++ + Sbjct: 121 REIVENVRLWTAIPMSVGIAPSKTLAKIGSKFAKQY-KGYRSVCLIDTEEKRRKALALVD 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR KKL I T L AD ++R F + + T +EL G C+ E Sbjct: 180 LSDVWGIGRRTLKKLAYYNIHTPLAFADKSENWVRSRFTLPMIHTWKELNGVDCIDTTEV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I SRSFG +T+ ++ ++ +A+ A KLRS+ CR ++ FI T+ F + Sbjct: 240 I-AKQTICTSRSFGNMVTELEDLKASVAHFASSCANKLRSQSSLCRSVTVFIATNRFRED 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N + L T D+ +I N A L +++ G +Y+K+GV+LGD S +L Sbjct: 299 LPQYNNMLTYTLPIATADTLEITNTAIAILQELYRPGIQYKKSGVVLGDISSGKAISQDL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDLL 419 FD + R QLM +D +N + G+ T+ +GI +Q+W K +P Y T ++++ Sbjct: 359 FDHISNRSERHQLMHFIDNINQRYGKKTILLGIEGIGKQKWTAKCEQRTPNYLTDINEIM 418 Query: 420 RVK 422 ++ Sbjct: 419 TIR 421 >UniRef50_B3E0C4 Nucleotidyltransferase/DNA polymerase UmuC n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0C4_METI4 Length = 421 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/425 (38%), Positives = 241/425 (56%), Gaps = 15/425 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D + FY SCE +F P L GKPVVVLSNNDGC+++R+ EAK LG+ MG P+F+ K+ Sbjct: 7 FCLVDCDNFYVSCERLFNPGLEGKPVVVLSNNDGCIVSRSNEAKLLGIPMGAPFFRWKEF 66 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 F++ GVV SSNY LY D+S R+M LEE +P VEIYSIDEA+ DL+ + F R Sbjct: 67 FKQQGVVALSSNYALYGDISGRLMQLLEESAPCVEIYSIDEAWIDLSAHPSPE---SFAR 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+R + + T + V +GIA TKTLAK+A+ AKK G+ L E + + L V Sbjct: 124 ELREKIRRWTGIPVTLGIAPTKTLAKVASKIAKK-TTALKGMNLLFGEEEIDQALRTLEV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D++WGIG R++ KL GI +DL + D IR+ F+V+LERTV ELR C LEE Sbjct: 183 DELWGIGARLAAKLKERGISKAVDLKNADPFKIRRLFSVMLERTVWELRAISCFGLEENV 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++I+ S++FG+ + +R A + +A KLR +S F++ PF Sbjct: 243 SPPKQILSSQTFGQTLFSLDELRAATAHFVKESARKLRQFGLAAHQLSVFLRHGPF---- 298 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y SAS + + P D ++ A L A+++ Y K+GV+L D Q Q + + Sbjct: 299 PGYIESASFRFMEPIGDVIGLLEKADSLLQALYKPQRAYTKSGVILFDLLPQSCHQASFW 358 Query: 362 DDNAPRPGSEQ----LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 P E+ L +++ L ++G+ TL + + + W+++ +P YT+R + Sbjct: 359 ---PPEEEKERKYATLSHLLEELPKQKGKPTLRVGTELLGENWRLRFQRKTPSYTSRWEE 415 Query: 418 LLRVK 422 + VK Sbjct: 416 IPAVK 420 >UniRef50_A0L3I2 DNA-directed DNA polymerase n=1 Tax=Shewanella sp. ANA-3 RepID=A0L3I2_SHESA Length = 416 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 157/418 (37%), Positives = 238/418 (56%), Gaps = 10/418 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + ALCD N FY+SCE +F P GKP++V+SNNDG + + EA ALG+K P+F+ + Sbjct: 4 IIALCDGNKFYSSCEQIFNPQYRGKPLIVVSNNDGMTVTLSPEAAALGLKKFTPYFQVAE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 R GVV SSNY LY+++S++ M YSIDE F + ++L+ G Sbjct: 64 FCRANGVVVCSSNYALYSEISSQFMKVASRECFSYFPYSIDEIFAEFGNDDTPQNLSILG 123 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R V + L +GVG+ T TLAK ANHAAK+ + V+ N E ++ A+ Sbjct: 124 RKLRHDVWREVRLPIGVGLGDTLTLAKAANHAAKRLGYRGVCVIKAHNRE---AILGAML 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 DVWG+G+RI ++L +MGI T L LA + RK F V +ERT+ +L G ++ Sbjct: 181 TTDVWGVGKRIGQRLSSMGIHTALQLAQMKTKTARKMFGVNIERTIFKLNGTKAFNWDDM 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K++I +RS G+RIT +++A+ +A AA KLR + R + F +TS + Sbjct: 241 PVNKRQIFSTRSVGQRITTIEGLKEALSFHACEAARKLRGQKSVARCLVFFAQTSAYD-K 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 G S ++ L PT DS I T ++++ + A Y + GV L D + QL++ Sbjct: 300 HGVSGFSRTIHLPAPTSDSMIISQQITSAVESFY-AAVPYYRVGVGLLDI--EPGLQLDM 356 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 F+DN +P LM+VMD LN + G+G ++ A GI+++WQM+RA LSP Y T +++ Sbjct: 357 FNDNLGKPA---LMSVMDRLNEQMGKGAVFVAANGIEKKWQMRRAFLSPSYLTNWNEI 411 >UniRef50_A6DHJ1 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHJ1_9BACT Length = 415 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 175/422 (41%), Positives = 243/422 (57%), Gaps = 19/422 (4%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FYASCE F P L G+ +V+LSNNDGCVIAR+AEAKALG++MG P+F+ + L Sbjct: 11 ALADCNNFYASCERCFNPQLIGRAIVILSNNDGCVIARSAEAKALGIQMGVPFFEIRPLV 70 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 GV+ +SSN+ LY D+S RVM L + +E YSIDEAF L +C + + Sbjct: 71 EMHGVLAYSSNFPLYGDLSARVMQLLHVHAQEIEFYSIDEAFFTLPTT-HCPE--SYCTS 127 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+ V Q T + + +GIA TKTLAK+A+ AKK + G + RQ+ L + L ++ Sbjct: 128 IKEQVQQCTGIPISIGIASTKTLAKIASKLAKK----SRGTFLIQEANRQQVLENTL-IE 182 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 D+WGIGRR+SK+L GI+T LA D +++ K F V + RT ELRG P L LE Sbjct: 183 DIWGIGRRLSKRLQNCGIRTAWQLAMADEQYLLKRFGVCMLRTSHELRGIPSLALENSPE 242 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 KQ I SR+F E + D S+ Q + +A RA +KLR E Q ++ TFI+ P+ + Sbjct: 243 AKQSIRVSRTFPESVHDLDSLLQQLSFFADRACQKLRQEQQKALYVDTFIE-GPYPTRK- 300 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 S L +P+ + D I+A S ++ +KAGV L F S+ Q + F Sbjct: 301 --HRSTRFYLDSPSDYTPDFIHAVELSGQKLFHHC-EIRKAGVTLHHFSSKNAWQQDFF- 356 Query: 363 DNAPRPGSEQ--LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 + PR +Q LM D++N K G+G+L F G ++ + A LSPRYTT +DL Sbjct: 357 -SLPRDHQKQNTLMQQFDSINQKFGKGSLRFLSSGKRE--FSRGARLSPRYTTSWNDLAL 413 Query: 421 VK 422 VK Sbjct: 414 VK 415 >UniRef50_C0LIJ7 Putative DNA polymerase V subunit UmuC n=1 Tax=Acinetobacter sp. NFM2 RepID=C0LIJ7_9GAMM Length = 429 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 227/393 (57%), Gaps = 5/393 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F D+N+ Y S E + P L GKP VVLS+NDG +IAR+AEAK L + MG P FK +D Sbjct: 5 VFIHVDINSAYCSMEAFWNPKLKGKPCVVLSSNDGTIIARSAEAKLLKIPMGAPLFKVQD 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEE-LSPRV-EIYSIDEAFCDLTGVRNCRDLTD 118 + + V SSN+ LY +MS R L + P IYSIDE F + T D T+ Sbjct: 65 IINKHNVHVLSSNFALYGEMSRRFHGILSGFVDPSCYSIYSIDEGFIEFTQFTKNFDATE 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG--GVVDLSNLERQRKLM 176 REIR V + LT VG+ +T T +K+AN+ AKK G +V +S ++ + Sbjct: 125 MAREIRHQVYKFIGLTTCVGVGRTLTESKMANNLAKKNPELNGICNLVTMSLVDVESYYQ 184 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 S +PVD++WG+GR+ +KKL+ MGI +VLDLA ++ +R+ FNV ++ T+ EL G+PC + Sbjct: 185 S-MPVDEIWGVGRKYAKKLNDMGILSVLDLATSNPNRMRELFNVNMQSTILELLGQPCFE 243 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E KQ+I+ S+SFG++IT+ +++AI Y A +L +EHQ C + F++++P Sbjct: 244 FESSPKAKQQIVSSKSFGQKITELSILQEAISKYTHNAFNRLVAEHQLCGSLIVFLQSNP 303 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F ++PYY S + PT + ++ AAT +D +++ G ++K GVML + + Sbjct: 304 FDQSKPYYSKSLTYTFTQPTNNLMQLVKAATSLIDKLYKEGIEFKKCGVMLCELIKEEHR 363 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 + L D + LMT + +K G+ + Sbjct: 364 TIGLLTDVEQLEKEQALMTAFQNIQSKFGKAKI 396 >UniRef50_A0K1P6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=A0K1P6_ARTS2 Length = 437 Score = 274 bits (701), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 169/430 (39%), Positives = 242/430 (56%), Gaps = 21/430 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL DVN FYAS E F P L G+P+VVLSNNDGC + R+ EAKALG+ +G+PWFK Sbjct: 18 IALVDVNCFYASAERAFDPSLEGRPLVVLSNNDGCAVTRSPEAKALGIPVGEPWFKIAPR 77 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + G+V SSNYELY D+S RVM L S +E+YSIDEAF + G + +L G+ Sbjct: 78 AKEWGLVAKSSNYELYGDISARVMELLGRYSAWLEVYSIDEAFLGVKGTPD--ELLRLGQ 135 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER-----QRKLM 176 I+ V + + V VGIA TKTLAKLAN KW + G+ + + + + LM Sbjct: 136 TIKTAVRRNVGVPVCVGIANTKTLAKLAN----KWAKNNPGLNGVCHWDSMPPPAREALM 191 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 + V ++WG+ R++K+L+ MGI ++LDLA D IR F+VVL RTV EL+G C+ Sbjct: 192 GRVSVIELWGVAGRLTKRLNNMGIHSILDLARADPVRIRDRFSVVLMRTVLELQGTACIP 251 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 +E + ++I SRSF IT +RQ + Y +A+ +L + ++ F TS Sbjct: 252 MEAERIGRDQLIFSRSFSTPITTAADLRQVMSVYGQQASARLAKHSLQAKVLTAFAGTSH 311 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-V 355 + + Y S V L PT D + AA L I Q G +Y +AG+M+ D G Sbjct: 312 YNPLDTSY-PSVCVTLPMPTADPVLLTRAAHALLPRI-QEGTKYVRAGIMVTDLRPSGQQ 369 Query: 356 AQLNLFDDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYT 412 + L +F + P E+ + +++ + + GRG++ GI+ W M+R MLSPRYT Sbjct: 370 SPLPVFAN----PHEERGIGPLLEDITRRYGRGSVGLGHAGIRGGPDWSMQRTMLSPRYT 425 Query: 413 TRSSDLLRVK 422 T ++L VK Sbjct: 426 THWNELPVVK 435 >UniRef50_Q2TTW3 UmuC n=8 Tax=Enterobacteriaceae RepID=Q2TTW3_ECOLX Length = 202 Score = 273 bits (698), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 128/196 (65%), Positives = 151/196 (77%) Query: 164 VDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE 223 + L N+ R KL+S PV+++WG+GRRISKKL+ MGI T L LA FIRK+FNVVLE Sbjct: 4 LTLGNIRRTEKLLSLQPVEEIWGVGRRISKKLNTMGITTALQLARATPVFIRKNFNVVLE 63 Query: 224 RTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQ 283 RTVREL GE C+ LEE P KQ+I+CSRSFGER+T Y +MRQA+C YA RAAEKLR E Q Sbjct: 64 RTVRELTGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQ 123 Query: 284 YCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKA 343 +CR I+ F+KTSPFA+NEPYYGN AS KLL PTQD++DII AA R+LD IW GHRY KA Sbjct: 124 FCRHIAVFVKTSPFAVNEPYYGNMASEKLLIPTQDTQDIIAAAVRALDRIWVDGHRYAKA 183 Query: 344 GVMLGDFFSQGVAQLN 359 G ML DF GV+ LN Sbjct: 184 GCMLNDFAPDGVSLLN 199 >UniRef50_C2BWE4 DNA-directed DNA polymerase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWE4_9ACTO Length = 456 Score = 273 bits (697), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 168/427 (39%), Positives = 234/427 (54%), Gaps = 14/427 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FAL DV++ +ASCE +F P+L+G+PVVVLSNNDGCV+AR+ EAKALG+KMG PWF+ + Sbjct: 38 FALVDVDSCFASCERIFHPELFGRPVVVLSNNDGCVVARSREAKALGIKMGMPWFQIRAR 97 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 CGVV SSNYELY +S R+M L + S VE+YSIDEAF L G + R Sbjct: 98 AEACGVVARSSNYELYGSISARIMEILRQFSASVEVYSIDEAFLTLYG--RPTEFVGIAR 155 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV--DLSNLERQRKLMSAL 179 +R+ +L + V VGIA T+TLAKLA+H AK GGV D + +++ Sbjct: 156 SLRSRILHDLGVPVSVGIAPTRTLAKLASHGAKH-TPALGGVASWDAYTPAQHDRILRGT 214 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ-LE 238 + D+WGIGRR+ +L+A+GI L L + IR+ FNV L++TV EL G PC++ +E Sbjct: 215 EIADLWGIGRRLKNRLEALGITDALQLQRANPGEIRRRFNVNLQQTVLELNGVPCIEIIE 274 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 A +++ SRSF + Q + Y+ +LR + + F T+ + Sbjct: 275 RDAVRTHQVMYSRSFSTPVRGVTQAYQVLSIYSQNVTHRLRRQQMTAGALWAFASTAWY- 333 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ- 357 EP+ SA L T D ++ AA + L Y +AG+ L D + Sbjct: 334 -KEPFSRISAMAPLHPRTDDPVTVLKAAAKVLLGQVDPRADYVRAGICLTDLGKPDPQEP 392 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGT--LYFAGQGIQQQWQMKRAMLSPRYTTRS 415 L +F AP P S + ++D +NA G G+ L AG W MKR MLS R TT Sbjct: 393 LPIF---APDPESRRRGKIIDRVNAAVGEGSVGLGLAGLKAAPDWTMKREMLSNRGTTHW 449 Query: 416 SDLLRVK 422 S+L V+ Sbjct: 450 SELALVR 456 >UniRef50_Q1QXW8 DNA-directed DNA polymerase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXW8_CHRSD Length = 419 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 168/423 (39%), Positives = 229/423 (54%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYA+CE +F P L G P+ VLSNNDGCVIAR+ E KAL + MG P K Sbjct: 1 MFALIDCNNFYAACERLFEPRLEGVPLGVLSNNDGCVIARSEEFKALDIPMGIPTHKIAP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR +V SSNY LY D+S RV L + P +E YSIDE F DL G+R D G Sbjct: 61 HLRR-RIVLKSSNYTLYGDLSARVQQVLAQQVPTLEPYSIDECFLDLRGMRE--DWHALG 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK-KWQRQTGGVVDLSNLERQRKLMSAL 179 + +V ++ L V +GIA T+TLAKLAN AK + R V ++ ++ L Sbjct: 118 ATLVRSVQRQVGLPVSIGIAPTRTLAKLANRQAKTQPTRPQVCVWQSADAPELAAHLARL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 +VWG+G R++ +L MGI T L +T +R+ F+VVL RT EL G+ CL + + Sbjct: 178 SPREVWGVGERLNARLAGMGIVTAAALRETPDSVLRRRFSVVLARTAAELNGQACLSMGD 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ I+CSRSFG+ + D S+ A+ + RA EKLR + I +++T+P Sbjct: 238 LETPRRSILCSRSFGQPLRDRASLAGALRHHCQRAGEKLRRDAMQASAIGVYMRTNPHHA 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + ++ L P+ D++ + AA R L +WQ YQK GVML + + +Q Sbjct: 298 DS-FHQACEWAALPFPSADTQQLNRAAQRLLARLWQPAA-YQKLGVMLTELTPRRQSQTT 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LFD P E LM DT+ A+ GR L Q WQM A S YTTR +L Sbjct: 356 LFDGAEP-ARQEALMHAWDTIRARYGRQALTLGPQPADAPWQMNSAYRSACYTTRWDELP 414 Query: 420 RVK 422 R + Sbjct: 415 RAR 417 >UniRef50_Q2YI99 Nucleotidyltransferase/DNA polymerase n=3 Tax=Bacteroidetes RepID=Q2YI99_9BACT Length = 431 Score = 270 bits (691), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 158/434 (36%), Positives = 241/434 (55%), Gaps = 15/434 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+ + D + Y SCE VFRPDL GKPVVVLSNNDGCV+AR+ EAK +G+K G P+F+ Sbjct: 1 MYGIIDCDNCYVSCERVFRPDLNGKPVVVLSNNDGCVVARSNEAKKMGIKAGTPYFQLAQ 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + FSSNYELY +++ RV+ + + +P+ YSIDE F + ++L G Sbjct: 61 QYPDAKIAVFSSNYELYGELTGRVVEIIRQEAPKYFRYSIDECFVYFNDFED-KNLKSGG 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + + + + V +G+A TKTLAK+A++ AKK+ + + E+ K + P Sbjct: 120 ENLHKRIRKSVGMPVSIGLAPTKTLAKMASYFAKKYAGYRHCCL-IDTDEKWTKALKLFP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF-NVVLERTVRELRGEPCLQLEE 239 +++VWGIGRR + KL+A+G+ T D A ++R F N+V+ RT +EL G + EE Sbjct: 179 INEVWGIGRRYAAKLEALGVHTAYDFAQHHGDWVRATFHNIVIYRTWQELNGVDAVPNEE 238 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A K+ I SRSF +TD+ +++ + +YAAR AEKLR + ++ F+ T+ F Sbjct: 239 MA-KKKSICTSRSFNGMVTDFDTLKTHVSNYAARCAEKLRQQGTVASIVAVFLHTNLFRE 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + P Y N +L T + DI AA L +I+ G+ Y+KAGV++ QL+ Sbjct: 298 DLPQYWNFQEKRLTVGTNSTIDICKAANEVLQSIYVKGYHYKKAGVIVMGIGPNAPMQLD 357 Query: 360 LFDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML----------S 408 LFD NA + ++L V+D +N G T+ Q Q+ RA + S Sbjct: 358 LFDYNAEQFQKMKRLDAVIDRINKVNGTETIVLGSQQYTQKDGKGRAEVFANAIKHDYRS 417 Query: 409 PRYTTRSSDLLRVK 422 TTR SD++ +K Sbjct: 418 KNPTTRWSDIIHLK 431 >UniRef50_Q2RYM0 UmuC protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYM0_SALRD Length = 432 Score = 270 bits (690), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 169/428 (39%), Positives = 227/428 (53%), Gaps = 15/428 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D FY SCE VF P L G+PV VLSNNDGCVIAR+ E K GV MG P FK ++ Sbjct: 4 VFALIDCENFYVSCERVFDPSLRGRPVAVLSNNDGCVIARSEEVKEAGVPMGAPLFKWRE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 SSNY LY DMS RV S +EE + +E YSIDEAF G+ RD L+ Sbjct: 64 ELDEIEAEILSSNYTLYGDMSRRVHSIIEEEALALERYSIDEAFARFPGL--SRDNLSRV 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLA--NHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +R + + + V VG+ TKTLAK+A N A+K G + ++ +L+ Sbjct: 122 ADRLRRRIRRHIGIPVRVGVGPTKTLAKVADLNGKARKRAGWGQGTYVCPDEPKREELLK 181 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 + V D+WGIG K L G+ + +IR VV RT ELRG CL L Sbjct: 182 RVSVGDIWGIGSAYEKTLQEKGVASAAGFRALPGPWIRSEMTVVGLRTAWELRGRSCLDL 241 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E P ++ ++ SRSFGER+ ++R+A+ +A RAAEKLR E + I FI T F Sbjct: 242 ELVRPDRKTMVRSRSFGERVETKANLREALAKHAQRAAEKLREEGLVAKGIKVFITTKRF 301 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + P+Y N + L T + A+ R L+ I+++GH Y+KAGV L D Q Sbjct: 302 G-DPPHYSNGVAGALPEHTARASAFAKASRRLLEPIYRSGHGYKKAGVCLYDIRPSRPHQ 360 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-------IQQQWQMKRAMLSPR 410 +LF R E LM +D +N K G+G + A G ++++W MKR SP Sbjct: 361 ESLFGQG--RKEDEDLMEAVDQINRKHGKGAIGLAAAGLPEGKGHLEREWTMKRQRRSPL 418 Query: 411 YTTRSSDL 418 YTTR +L Sbjct: 419 YTTRWDEL 426 >UniRef50_Q31B23 DNA-directed DNA polymerase n=7 Tax=Prochlorococcus marinus RepID=Q31B23_PROM9 Length = 428 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 154/414 (37%), Positives = 231/414 (55%), Gaps = 6/414 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FYASCE P L KPVV+LSNNDGC+IAR+ EA+AL +KMG P+FK K+ Sbjct: 9 IALIDANNFYASCEQTINPHLRNKPVVILSNNDGCIIARSPEARALKIKMGTPYFKVKEK 68 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V SSNY LY DMS R+M+ L++ ++EIYSIDEAF ++ N ++L + R Sbjct: 69 LNKLDVAVLSSNYSLYGDMSRRLMNLLKKYCEQIEIYSIDEAFVSISRP-NDKNLYPWAR 127 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR+ + Q +T+ VGI + K AK+AN AK + G+ DLS + + + V Sbjct: 128 NIRSLIYQNLGITLTVGIGENKVRAKIANKLAKNID-YSAGIFDLSRTRNENNYLKRISV 186 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D++WG+G++ S L + GIK +L D + I K +V +R EL+G CL LE+ Sbjct: 187 DNIWGVGKQTSNWLKSKGIKNARELRDMEENEIIKKLGIVGKRLQLELKGYKCLPLEKSK 246 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 +K+EI SRSFG IT + QA+ ++A +A+EK+RS++ I F +TS ++ Sbjct: 247 KSKKEIQVSRSFGTPITKLEDLTQALATHAIKASEKMRSQNLQSSDIRVFARTSKYS--S 304 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y SA KL T D+ I+ I+ +++ KAGV++ D + Q ++ Sbjct: 305 QNYQRSAHRKLTNATDDTNSILKIVVELSKEIYNPEYKFSKAGVLMQDLTNSEYLQQSVI 364 Query: 362 DDNAPR--PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTT 413 + + + S LM +D LN + + +A Q+ W+M + LS TT Sbjct: 365 NYKSQKDLKKSATLMRTIDLLNKRFNNNAITWAITKTQKSWKMNKNFLSRSSTT 418 >UniRef50_A3M2E2 DNA-directed DNA polymerase n=8 Tax=Acinetobacter RepID=A3M2E2_ACIBT Length = 436 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 157/419 (37%), Positives = 231/419 (55%), Gaps = 12/419 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L DVN Y S ET F P L G+ V+VLS+NDG V+AR+ AK LG+KMG+P F+ DL Sbjct: 13 FFLVDVNNMYTSVETAFDPSLTGRSVIVLSSNDGNVVARSPAAKKLGIKMGEPLFQILDL 72 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEE-LSPR-VEIYSIDEAFCDLTGVRNCRDLTDF 119 R V+ SSNY +Y +MS R L E +SP EIYS+DEAF +LT R +L Sbjct: 73 VMRNDVIVLSSNYIIYGEMSRRFHKILAEYVSPENHEIYSVDEAFLELTSYRGIYNLNQC 132 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG--GVVDLSNLERQRKLMS 177 ++I+ +L+ L V VGI ++KT AK+ N+ AK + G V DL+ E + + Sbjct: 133 AQDIKEKLLKLLSLPVCVGIGRSKTEAKIMNYIAKTYPHLNGICNVFDLA--EVKDSIFR 190 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 V +VWG+G + KKL M I TV DL I+ F+VVL+RTV EL G C+ + Sbjct: 191 NTDVGEVWGVGSQQKKKLRLMNINTVYDLMTASPSHIQSVFSVVLKRTVLELNGISCIDI 250 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E PTK++I+ SR+FG+RITD +++A+ A + R+E I F ++PF Sbjct: 251 EHTPPTKKQIVSSRTFGQRITDIHDLKEAVIKRTQEAFTRARNEQVLVGCIIVFAYSNPF 310 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 +P+Y S PT D R ++ ATR +D ++++G ++KAGV+L + Sbjct: 311 DKTKPFYKKEQSSSFAVPTDDLRLLVQTATRLMDQVYKSGIEFKKAGVILTCLEPKHTYT 370 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAMLSPRYTTRS 415 +L D+ +EQLM ++ + G+ + F G + + W L+ Y TR+ Sbjct: 371 YDLLTDHQDLEKTEQLMKAIEEVQQIFGKNKIGFGGSMFKNRIWN-----LTANYQTRN 424 >UniRef50_C0YV48 Probable RumB/ImpB like DNA repair protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YV48_9FLAO Length = 423 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 146/411 (35%), Positives = 232/411 (56%), Gaps = 5/411 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N F+ SCE PDL G+PVVVLSNNDGCV++R+ EAK LG+ M P FK K+ Sbjct: 1 MYALVDCNNFFVSCERTLDPDLEGRPVVVLSNNDGCVVSRSKEAKDLGIPMAAPAFKYKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LF++ V FS+ +ELY S +V++ + E+YSIDE F DLTG + D+ ++ Sbjct: 61 LFQKHDVKSFSAKFELYNYKSQQVINIAKSYVLDHEVYSIDELFLDLTGFKYI-DIYEYC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +I+ + + + V +GIA TKTL K+AN K++ GV L E+ K + L Sbjct: 120 LKIKEEIKDKESIPVSIGIAPTKTLCKVANRIVKEFPENFNGVYILDTPEKIEKALKWLN 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR++ K++ G+ DL ++RK + R + EL+G L+L+ Sbjct: 180 IGDVWGIGRRLAAKMNDSGVYKAWDLLQKPEMWVRKIMGIHGVRMINELKGIRQLELDAP 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +P K+ I +RSF + +T+ +R+ + ++ +E+LR ++ C+ I+ F++T+ F + Sbjct: 240 SP-KKSIAVTRSFMQMLTNKEEVRERVETFGMYCSERLRKQNTCCKMITVFVQTNRFRKD 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N+ + L PT S I +AI++ G Y++AGVM+ DF + Q++L Sbjct: 299 LPEYKNAMTRILSNPTNSSILIGRVVNELFEAIYREGFHYKRAGVMVNDFVPEDQRQISL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 F+++ + +M MD +N K G+ + + RA LSP Y Sbjct: 359 FEEDI-QNQHLPVMKAMDAMNRKFGKDKVRLGSMSGDNTFG--RAKLSPEY 406 >UniRef50_Q0KKM4 Putative UV protection protein n=1 Tax=Plasmid pLB1 RepID=Q0KKM4_9ZZZZ Length = 420 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 163/417 (39%), Positives = 234/417 (56%), Gaps = 5/417 (1%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 + DV FY S E +F P L G PV+VLSNNDGC +AR+ EAKAL V+MG+P FK +D Sbjct: 4 GIVDVQNFYVSAERLFDPSLRGVPVLVLSNNDGCAVARSEEAKALHVRMGEPVFKIRDRI 63 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R G+ SSNYELY+D++ R + + + S VEIYSIDE+F + + + + Sbjct: 64 ERHGMRLRSSNYELYSDLNRRFNAVIADHSDTVEIYSIDESFYRAPTLPSGLGDVEAAHK 123 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +R +L++ L +G+ T+TL+K+AN AK ++ GGVVDL + E +R+L PV Sbjct: 124 LREDILRQVGLPTRIGLGPTRTLSKVANALAKATEKVWGGVVDLHDTELRRRLFEKWPVG 183 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 +VWGIG + +L +GI+T DLA R +VVLER VREL G C+ + Sbjct: 184 EVWGIGGALEARLRPLGIRTTADLAAMPPAVARDVGSVVLERLVRELNGIECVDFKLEPD 243 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 + +R FGE + +R+A+ AARAAEK+R++ + F S + N P Sbjct: 244 ALKNTAVTRQFGEPVKTLEELREAMARRAARAAEKIRAQGLVASRLIAFAHGSRYRPNPP 303 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 SA +L PT D R I+ + +A++Q G Y K GV+L D QG Q +LF Sbjct: 304 SASRSA--RLSPPTNDPRIILRIVGQMTEAMFQPGGVYTKCGVLLEDLTPQGHGQADLFA 361 Query: 363 DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDL 418 PR + L+ MD LN++ GR T+ A QG + + KR+ SP +TTR D+ Sbjct: 362 VADPR--APALLAAMDGLNSRFGRNTIMLAAQGHGPKAFDTKRSQKSPAWTTRIKDI 416 >UniRef50_Q6MCK0 Putative SOS mutagenesis and repair protein UmuC n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCK0_PARUW Length = 393 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/378 (38%), Positives = 219/378 (57%), Gaps = 5/378 (1%) Query: 27 VVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMS 86 +VVLSNNDGCVI+R+ EAK LGVKMG+P+F+ K L + FSSNY LY D+S R+M+ Sbjct: 1 MVVLSNNDGCVISRSQEAKLLGVKMGEPYFQIKALCEFRNIQVFSSNYALYGDISERIMN 60 Query: 87 TLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLA 146 L E +P ++IYSIDEAF DL E++ V + + + +G+A TKTLA Sbjct: 61 LLFEHAPDLDIYSIDEAFLKYPSSVAPSDLVSLCHELQKKVKKWVGMPISLGLANTKTLA 120 Query: 147 KLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDL 206 K+AN AKK Q V DL++ RQ+ L + L + DVWGIGR + +KL+ M I T + Sbjct: 121 KMANDLAKKIQNFY--VFDLNSSVRQKVLQNYL-IGDVWGIGRNLKEKLNGMNIHTAWEY 177 Query: 207 ADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQA 266 A D IRK V+ ER + ELRG CL+ +E +K+ ++ SRSFG +++ + +A Sbjct: 178 AQMDPSIIRKRLGVIGERILWELRGVSCLESDE-KVSKKSLLYSRSFGHVLSEITPLSEA 236 Query: 267 ICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAA 326 + +Y AEKLR++ + + F++ + +S + PT+D+ ++I AA Sbjct: 237 LSTYVYTVAEKLRAQGSLAKALYIFLEYQIQPGKKMRCYDSITEIFPAPTKDTGEMIKAA 296 Query: 327 TRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR 386 R L+ I++ RY+K GV+L D + + +LF N P QLM MD LNA+ G+ Sbjct: 297 KRGLNKIFRREERYKKCGVILLDLLPESSSNSDLF-LNPVDPKRTQLMNTMDALNARFGK 355 Query: 387 GTLYFAGQGIQQQWQMKR 404 L+F G W+ ++ Sbjct: 356 KKLFFGAMGTDVSWKSRK 373 >UniRef50_B2I3H3 Nucleotidyltransferase/DNA polymerase n=12 Tax=Acinetobacter RepID=B2I3H3_ACIBC Length = 442 Score = 253 bits (647), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 152/428 (35%), Positives = 234/428 (54%), Gaps = 10/428 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D+N Y SCE +F P L KPVVVLSNNDGCV++R+ EAK LG+KMG PWF+ + Sbjct: 9 VYALVDINNCYVSCERLFNPKLNDKPVVVLSNNDGCVVSRSEEAKLLGIKMGVPWFQIEK 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEE-LSP-RVEIYSIDEAFCDLTGVRNCRDLTD 118 + GV +SSNY LYA+MS R + L E SP +E YSIDE F LT D++D Sbjct: 69 DALQAGVQVYSSNYTLYAEMSRRFFAVLGEFFSPDDLEAYSIDECFIHLTPYLQSIDISD 128 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER--QRKLM 176 + ++R+T+L+ L +GI +KT AKLANH AKK + GV + L+ LM Sbjct: 129 YCNKVRSTLLKWLGLPCCIGIGYSKTQAKLANHYAKKI-KSFKGVCNFITLDPLIMEDLM 187 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 V +VWGIG ++ K+L + + T LDL + + K F+VV+ RT+REL+G+ C+Q Sbjct: 188 QQTSVKEVWGIGYQLVKQLQSYEVYTCLDLTFANEHHMAKAFSVVMARTIRELKGQSCIQ 247 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 L++ A + I+ SRSF + ++ ++QA+ + RA +L + Q C + + Sbjct: 248 LDDPAIPTKRILASRSFAQALSSIEIIKQALIFHLNRAHRRLMKQEQLCACVQVMLYEKT 307 Query: 297 FALNEPYY--GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 ++P Y S ++ L T D + AA + +D +++ Y K GV+ ++ Sbjct: 308 ---DKPPYKKATSQAIGLHYATDDLCILTKAAMQQIDVLYKENKSYIKIGVLFCALHARQ 364 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 +L+ +QLM + T+ + G L WQMK+ S Y TR Sbjct: 365 QHIDDLWQPLELIHQRQQLMETLGTVRKRFGSHYLQVGYHSRNPSWQMKQCHRSKNYLTR 424 Query: 415 SSDLLRVK 422 +++L ++ Sbjct: 425 WNEMLTIE 432 >UniRef50_Q46L62 DNA-directed DNA polymerase n=2 Tax=Prochlorococcus marinus RepID=Q46L62_PROMT Length = 425 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 231/415 (55%), Gaps = 6/415 (1%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 D N FYASCE + P + GK +VVLSNNDGC+IAR++EA+ +G+ MG P+FK K+ + Sbjct: 9 DGNNFYASCEQMIDPSIKGKGLVVLSNNDGCIIARSSEARRMGIPMGQPYFKLKNKLNQL 68 Query: 66 GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRA 125 + SSNYELY D+SNR+M L + +EIYSIDEAF + + + L +G+++RA Sbjct: 69 NINVRSSNYELYGDISNRLMQLLRKNCEELEIYSIDEAFGTIKRPKE-KCLYKWGKDLRA 127 Query: 126 TVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVW 185 V Q + + +GI +TK L+K++NH AKK Q + G+ D+ +E + + + VD VW Sbjct: 128 LVYQNIGIPISIGIGETKVLSKISNHLAKKIQTNS-GIFDIGRVENKDHYLDLINVDKVW 186 Query: 186 GIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQ 245 GIG+R+SK L GI +L D I+ + VV R EL+G C+ ++E + ++ Sbjct: 187 GIGKRMSKWLKDRGITNARELRDMSSDQIKGKYGVVGLRIQNELKGNLCIPIKENSSDRK 246 Query: 246 EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYG 305 EI SRSF I + QAI Y A+ KLR +Q I+ F T+ + + ++ Sbjct: 247 EICVSRSFAHPIDSLDDLSQAIIKYVLIASAKLRKYNQLSSAITVFTNTNTHS--KDFFR 304 Query: 306 NSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNA 365 + A+ K+ PT +S+ +I + I++ + KAGV+L S Q +FD Sbjct: 305 SEATEKISVPTSNSKIMIEKSLSLTKEIFKPYKNFIKAGVILHKLQSNQYKQNLIFDAQN 364 Query: 366 PRPG--SEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 + ++L V+D +N+K G T+ + + +W +R LS TT ++ Sbjct: 365 IKEELYLQRLDNVIDNINSKNGIDTINWGSSMMDTEWSPRRKNLSSIKTTNIENI 419 >UniRef50_A6EED8 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Pedobacter sp. BAL39 RepID=A6EED8_9SPHI Length = 417 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/421 (36%), Positives = 229/421 (54%), Gaps = 9/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFA D+N Y SCE +FRP+L + VVVLSNNDGCVIAR+ EAKA+G+KM D F ++ Sbjct: 1 MFAHVDINNCYVSCERLFRPELERRVVVVLSNNDGCVIARSNEAKAIGIKMADAEFIVRE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + V FSSNY LYADMS R+M+ L + + +YSIDEAF L ++ DL+ Sbjct: 61 RLKESNAVIFSSNYALYADMSARLMNNLARYTYTLMVYSIDEAFMALGNIKGI-DLSQHA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I V + T L + VG+ T +LAKLAN AAKK Q + L E+ ++ P Sbjct: 120 ATISNNVFRDTGLPITVGVGPTLSLAKLANKAAKK---QGRNFMVLDTEEKINAMVQTFP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIG KL + I+T D F+RK V R +EL G PC +++ Sbjct: 177 IEDVWGIGMAYYNKLREINIQTAHDFRSLKADFVRKQMTVQGWRLHQELWGIPCNVIKDV 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A + I S+SF T + +A+ +A A KLR + ++ +++T+ + Sbjct: 237 AERSKGIESSQSFNTYQTTLEKVEEAVAMHAGTVALKLRQQKSMALNLTVYLRTNKHNVK 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y S +VK+ ++ ++L AIWQ G+ Y K GV +G Q NL Sbjct: 297 HDQYYPSLTVKIPFAANSVHELTQVCVQALRAIWQPGYNYLKTGVRATGIIPEGEVQNNL 356 Query: 361 FD--DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 F+ DN+ + +++ ++D +N + GRGTL +G + W+MK+ LS +YTT +++ Sbjct: 357 FNEYDNSRK---QEISKLLDQINDRYGRGTLRLGVEGFDKTWKMKQDYLSRQYTTNWAEI 413 Query: 419 L 419 + Sbjct: 414 I 414 >UniRef50_B5TTR9 RumB n=6 Tax=Bacteria RepID=B5TTR9_9BACT Length = 375 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 203/366 (55%), Gaps = 6/366 (1%) Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEE-LSPR-VEIYSIDEAFCDLT 108 MG P F+ K+L + + SSNY LYA+MS R + L E ++P+ EIYSIDE F DLT Sbjct: 1 MGVPLFQLKELVEQHNITVLSSNYALYAEMSRRFIKVLAEFVTPQEQEIYSIDECFLDLT 60 Query: 109 GVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSN 168 + DLT + I + + L +GI +TKT AK+ANH AKK GV +L + Sbjct: 61 AYASNYDLTAYAHLILDRLSRWLGLPACIGIGRTKTEAKMANHIAKK-NSYLKGVCNLVS 119 Query: 169 LE--RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTV 226 ++ L ++ V +VWGIGR+ +KKL+++ I TVLD IR F+VV+ RT+ Sbjct: 120 MDYCSIEGLYQSIEVSEVWGIGRKHTKKLNSLSINTVLDFVCASPLMIRDQFSVVMHRTL 179 Query: 227 RELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 EL+G C+++E+ K++II SRSFG+++ +++AI Y A +LRSE+ C Sbjct: 180 LELQGISCIEIEQSPKAKKQIIASRSFGQKVYSCEDLKEAITLYVQDAVSRLRSENLLCG 239 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVM 346 I +F++++PF +EP+Y S S L P+ +S + AT +D ++Q ++K GV+ Sbjct: 240 CIISFVQSNPFDTSEPFYNKSLSYALPDPSDNSLLLSKIATSMVDQLYQKNIGFKKCGVI 299 Query: 347 LGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRA 405 L + +LF D S +LM +D + K G+ + + + W M R Sbjct: 300 LTCLEPKATHIYDLFTDMNKIESSNKLMDSLDDIQNKFGKRKIGLGASMLPDRNWNMSRN 359 Query: 406 MLSPRY 411 LSP Y Sbjct: 360 KLSPNY 365 >UniRef50_C9M6E1 UmuC protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6E1_9BACT Length = 429 Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 204/392 (52%), Gaps = 7/392 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + LCD + F+ SCE VFRP+L G+PVVVLS+NDGCVI+R+ EAK LG+ M P+FK Sbjct: 7 LIGLCDGDNFFVSCERVFRPELNGRPVVVLSSNDGCVISRSNEAKRLGIPMCAPFFKIAP 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L RR G+ S N E+Y +MS+R+M+ + + S +VE YS+DEAF +L+ + + D Sbjct: 67 LVRRHGMTALSGNMEMYREMSDRMMAVIAQFSDQVEQYSVDEAFFNLS-IASLTDPAAHC 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R T+ +R L V +G A +KTLAK A+ K ++ G V L E ++++P Sbjct: 126 LALRRTIARRIGLPVSIGAAPSKTLAKAASEMTKG--KEPG--VRLIRPEETACAVASMP 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ VWGIG+R ++K+ + GI+ V L +++ HF++ + ELRG L Sbjct: 182 VERVWGIGKRTARKMLSFGIRLVPQLTARPNGWLKGHFSIREVQIADELRGLKRFPLSSQ 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 T Q I +R+ + + + + +LR H + FI+TS F+ Sbjct: 242 EETPQSIQVTRTSAGPLRTEDELWDGLIRHILGGTARLRRHHLAAGRMELFIRTSYFSSQ 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + AS PT D + A + L ++Q G Y+ +GV D QL Sbjct: 302 SRFASSRASFS--PPTDDDLACLRAGRQILSRVFQPGWNYRASGVRFSDLSPSQPRQLTF 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 D +LM +D LNA G GT+ A Sbjct: 360 ADQLPGTRKRHRLMEAVDALNADLGAGTVLPA 391 >UniRef50_UPI0000F2F527 DNA-directed DNA polymerase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2F527 Length = 375 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 197/370 (53%), Gaps = 12/370 (3%) Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEE-LSPR-VEIYSIDEAFCDLT 108 MG+P F+ DL R V+ SSNY +Y +MS R L E +SP EIYS+DEAF +LT Sbjct: 1 MGEPLFQILDLVMRNDVIVLSSNYIIYGEMSRRFHKILAEYVSPENHEIYSVDEAFLELT 60 Query: 109 GVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG--GVVDL 166 R +L ++I+ +L+ L V VGI ++KT AK+ N+ AK + G V DL Sbjct: 61 SYRGIYNLNQCAQDIKEKLLKLLSLPVCVGIGRSKTEAKIMNYIAKTYPHLNGICNVFDL 120 Query: 167 SNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTV 226 + E + + V +VWG+G + KKL M I TV DL I+ F+VVL+RTV Sbjct: 121 A--EVKDSIFRNTDVGEVWGVGSQQKKKLRLMNINTVYDLMTASPSHIQSVFSVVLKRTV 178 Query: 227 RELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 EL G C+ +E PTK++I+ SR+FG+RITD +++A+ A + R+E Sbjct: 179 LELNGISCIDIEHTPPTKKQIVSSRTFGQRITDIHDLKEAVIKRTQEAFTRARNEQVLVG 238 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVM 346 I F ++PF +P+Y S PT D R ++ ATR +D ++++G ++KAGV+ Sbjct: 239 CIIVFAYSNPFDKTKPFYKKEQSSSFAVPTDDLRLLVQTATRLMDQVYKSGIEFKKAGVI 298 Query: 347 LGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRA 405 L + +L D+ +EQLM ++ + G+ + F G + + W Sbjct: 299 LTCLEPKHTYTYDLLTDHQDLEKTEQLMKAIEEVQQIFGKNKIGFGGSMFKNRIWN---- 354 Query: 406 MLSPRYTTRS 415 L+ Y TR+ Sbjct: 355 -LTANYQTRN 363 >UniRef50_Q7NUT5 UmuC protein n=1 Tax=Chromobacterium violaceum RepID=Q7NUT5_CHRVO Length = 301 Score = 190 bits (483), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 116/288 (40%), Positives = 164/288 (56%), Gaps = 5/288 (1%) Query: 133 LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSALPVDDVWGIGRR 190 + V VGI +KTLAKLANH AK+ GV D S L LM+ LP VWG+G R Sbjct: 12 IPVSVGIGPSKTLAKLANHVAKRVAGWDDGVFDWSWLSPAETDALMARLPAGKVWGVGPR 71 Query: 191 ISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICS 250 ++ L I T L L D R+++++F+V LERT EL G CL LEE A +Q+II S Sbjct: 72 LAAGLAEKRIDTALKLKRADPRWLQRNFSVTLERTAAELNGVSCLSLEEAAQPRQQIISS 131 Query: 251 RSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASV 310 RSFGE+ +D + A+ + ARAAEKLR + R + +TSPF ++PY+G + V Sbjct: 132 RSFGEKTSDLAVLSAAVSHHIARAAEKLREQGSAARLVGVSARTSPFG-DDPYHGYTV-V 189 Query: 311 KLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGS 370 L P+ D+ ++ AA L A+++ G RYQKAGV+L + + Q +LF AP P Sbjct: 190 PLAQPSDDTLELAAAALAGLRAVYRRGLRYQKAGVVLMELSPRERRQADLF-AAAPDPRR 248 Query: 371 EQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 ++LM +D +N G + A + + W+M++ SP YTTR L Sbjct: 249 QRLMRTLDAINRAYGHSCVKLASEALTPNWEMRQDQRSPCYTTRFDQL 296 >UniRef50_B2I405 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I405_ACIBC Length = 228 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 137/222 (61%), Gaps = 5/222 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D+N YAS E F P L KP+++LSNND ++AR+ EAK LG++MG P FK KD Sbjct: 5 IFALIDINNCYASIERFFNPQLIDKPIIILSNNDTSIVARSDEAKLLGIRMGVPVFKIKD 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEEL--SPRVEIYSIDEAFCDLTGVRNCRDLTD 118 + +R VV SSNY +Y +MS R S + + +E+YSIDEA+ LT + DLT+ Sbjct: 65 IIKRNNVVMLSSNYTVYGEMSRRFHSIINQFVTDQEMEVYSIDEAWLLLTNYESLFDLTE 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER--QRKLM 176 + I+ + + L V VG+ ++KT AKL N AKK + GV DL N++ + + Sbjct: 125 YAHTIKKEIFRLIGLPVSVGLGRSKTEAKLGNFLAKK-MKHFNGVCDLVNMDPLIKEDIF 183 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF 218 +P+++VWG+G +I+K+L+ G +V DLA + +I+ + Sbjct: 184 QDIPLNEVWGVGSQIAKQLNNFGFSSVYDLAVANPVWIKNNL 225 >UniRef50_D2LKT9 Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein n=2 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LKT9_RHOVA Length = 180 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/149 (53%), Positives = 100/149 (67%), Gaps = 3/149 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPW-FKQK 59 +FAL D N+FY SCE VF P L +PVVVLSNNDGC+IA E+KALG KMGDP+ K+ Sbjct: 3 VFALADCNSFYCSCERVFEPKLETRPVVVLSNNDGCIIALTTESKALGFKMGDPYHLKRA 62 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 DL RR V +SSNY LY DMS RVM+ L +P +E+YSIDEAF +L G R LT + Sbjct: 63 DLQRR-KVAVYSSNYTLYGDMSRRVMTVLTRFTPELEVYSIDEAFLNLAGFEG-RGLTGY 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKL 148 R IR+TV Q T + V +G+ + L + Sbjct: 121 ARTIRSTVRQETGIPVSIGVNRDPELPRF 149 >UniRef50_D0SQN6 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SQN6_ACIJU Length = 256 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 80/248 (32%), Positives = 143/248 (57%), Gaps = 2/248 (0%) Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 L++ + V +VWG+GR+ KKL+ MG+++VLDL + + + I+K F++V+E+TV EL+G C Sbjct: 9 LLAQVDVSEVWGVGRQNCKKLNTMGVQSVLDLINANPKEIKKQFSIVMEKTVLELQGLSC 68 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + L + K++II SRS+G + + ++ ++ Y ARA +++R + C+ I +I+T Sbjct: 69 IDLSDDTVAKKQIISSRSYGNPVYEMDDIKASVRLYVARAVKRMREDGSICKMIGVYIQT 128 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 S F E Y V++ T D I AA + +D I++ G +Y+KAG++L + Q Sbjct: 129 SRFDKTE-RYSPYIVVQMHEHTDDLLLITKAAMKGIDQIFKKGFKYKKAGIVLLEITDQS 187 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA-GQGIQQQWQMKRAMLSPRYTT 413 +LF D + + E+L ++ ++ + G+ + + W M + + SP Y T Sbjct: 188 KFVPDLFTDYSHKQERERLSDAIEAISERFGKNLVTLGIANNKEATWHMNQNLRSPSYLT 247 Query: 414 RSSDLLRV 421 + SDL RV Sbjct: 248 KWSDLPRV 255 >UniRef50_Q0EYF1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYF1_9PROT Length = 410 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 186/389 (47%), Gaps = 22/389 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYASCE P L G+P+ VLSN++ VIA++ +A+ALG++ G P ++ + + Sbjct: 10 IAHVDCDAFYASCEAARHPKLRGRPICVLSNHNAMVIAKSYDARALGIRTGTPVWEARRM 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-----RDL 116 + + ++ Y +S ++ S L SP VE+YSIDE F D G+R R+L Sbjct: 70 APHAAFL--TPDFRYYGQISQQMFSILRRYSPVVEVYSIDEGFIDFNGIRQLWKKTYREL 127 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 D EIR V +TV VG++ ++TLAK+A+ K V + ++ + Sbjct: 128 AD---EIRHAVWHELGITVSVGVSVSRTLAKMASEHHKP------NGVTVVPVQAIATFL 178 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 + L V ++ GIGR + L I+T L A D R +++ + EL G L Sbjct: 179 AELGVGEIPGIGRSRAALLCRKDIRTALQFARADERLLQRLIGRHGQMLRHELNGRAILT 238 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 LE P + + + S G RI++ R+ I +Y A +L ++ + + + + Sbjct: 239 LECEPPLPKSMAKTASMG-RISE---KRRVIAAYLGYHALRLVADLVAKQLLVS--RLYL 292 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F E + V L PT + I A +L ++ G RY+ GV+ + A Sbjct: 293 FLTLESFECRGLEVGLDLPTNSLKRINGAVHHALGRLFIEGERYRGCGVVATQLQREAHA 352 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 Q +LF +QLM ++ +N + G Sbjct: 353 QPDLFGLMREDLRQQQLMQAVNAINRRFG 381 >UniRef50_C7CFB9 Putative DNA-directed DNA polymerase n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CFB9_METED Length = 398 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 1/192 (0%) Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R TV RT ++ VGI TKTLAKLANH AKK + GGV DL++ + M+ +P Sbjct: 20 RDMRETVRARTGISTCVGIGATKTLAKLANHVAKKVP-ELGGVCDLTDPIQYGHWMARIP 78 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 +D+WGIG ++KL+A+G ++V D+ D D R +RK VV ER V+ELRG CL LEE Sbjct: 79 PEDIWGIGPANARKLEALGCESVADVRDLDTRAVRKAMTVVGERLVQELRGLACLDLEEV 138 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A ++ +RSF + + D +M QA+ ++AA+ EKLR ++ F TS + Sbjct: 139 ASARKGCAVTRSFSDGVEDLATMEQAVATHAAQLGEKLRGGGLATDHVTVFFHTSEHERD 198 Query: 301 EPYYGNSASVKL 312 P S+ V L Sbjct: 199 RPQRSVSSVVTL 210 >UniRef50_D1ZXB0 C-terminus not complete (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZXB0_SORMA Length = 299 Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/167 (45%), Positives = 105/167 (62%) Query: 17 VFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYEL 76 VF P L KP++VLSN DGC IAR+ EAKAL +KMG P FK +D+ R G+ SS+YEL Sbjct: 133 VFDPSLRDKPLIVLSNGDGCAIARSEEAKALHIKMGAPMFKIRDIVREHGIQYRSSSYEL 192 Query: 77 YADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVG 136 YADM+ R L E S VE+YSIDE+F L + N + A V + T L + Sbjct: 193 YADMNRRFNQVLAEHSCTVEVYSIDESFFRLPVLPNGLGDVAAAHRVIAAVKRATGLPIR 252 Query: 137 VGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 +G+ T+TL+K+AN AK ++ GVVDL ++E +R+L + PV++ Sbjct: 253 IGLGPTRTLSKVANALAKASEKVWKGVVDLHDIELRRRLFAQWPVEE 299 >UniRef50_Q2BYP9 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Photobacterium RepID=Q2BYP9_9GAMM Length = 426 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 114/433 (26%), Positives = 195/433 (45%), Gaps = 20/433 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D FYA ++P L P++V + G IA N + +G+ P +++ D Sbjct: 1 MICLLDGTRFYAESCITYKPALRNTPLLV-TTGQGISIAANRASTNIGISKFTPIWEEID 59 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEEL--SPRVEIYSIDEAFCDLTGV-RNCRDLT 117 R + + +N+ ++ S+R M+ LE+ R YS+DE F D++ + R DL Sbjct: 60 RLRVHKGIVYKANFNTFSHHSDRFMTALEKHIQDARSMRYSVDEVFYDVSHLYRINVDLN 119 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + + +R + + T + G G+ +T TLAK+A+ AAK Q G V +S E ++ Sbjct: 120 EHVQALRKAIYKETGVPTGAGVGKTLTLAKVASWAAKNCQPYQGQCVLISEKETD-TVLK 178 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 +PV +W IGR+++K L GI T L D + K +++ + + EL G CL + Sbjct: 179 QMPVGKLWNIGRQLNKHLTQEGILTAYQLKQCDTKTYHKRYSINVANVISELNGIACLDI 238 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 K++I + S+ +R+ + + + A K+R + + +S F+ TS + Sbjct: 239 SVEREKKKQIWSTASYRDRLHHRDDLFAELAHHCAEVMRKIRDQKSEMKTLSVFVCTSKY 298 Query: 298 ALNEPYY--GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 P+Y G LT T + + A L A K GV V Sbjct: 299 DRCPPFYRRGELTLENGLTDTSFALQQLRALFDDLIPNNLAKQPIYKVGVGAPSLIDAEV 358 Query: 356 AQLNLFD--DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLS----P 409 Q LF+ DN + L +D L+ + G+G + FA Q Q+ + ++ + Sbjct: 359 KQFELFNRFDN-----KDTLNNTLDQLSDRFGKGVIGFACQ--QRSYHERQGEIEMLELE 411 Query: 410 RYTTRSSDLLRVK 422 Y T D++ VK Sbjct: 412 NYYTDIKDIVVVK 424 >UniRef50_D2R017 DNA-directed DNA polymerase n=2 Tax=Planctomycetaceae RepID=D2R017_9PLAN Length = 398 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 118/396 (29%), Positives = 186/396 (46%), Gaps = 36/396 (9%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + A D + FY S E V L KPV VL N CVIA++ E K GVK G+P ++ Sbjct: 2 LIAHLDADCFYVSAERVRDRFLADKPVGVLGNQGACVIAKSYEMKKAGVKTGEPIWEA-- 59 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + ++ Y +S ++ + E SP+VE YSIDE F + + F Sbjct: 60 LTKCPDGIYVKRDFRWYEVLSRAMLDVVREFSPQVEYYSIDEFFLSVD-----QSPASFA 114 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 E++ +L R + V +G+A+T+TLAKL + AK + G + L E + +L+++ P Sbjct: 115 HELQQAILDRVGVPVTIGVARTRTLAKLVSDLAKPF-----GALALIGREAEEQLLASRP 169 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 DV GI R + KL + GI T LDLA D +R V ER ELRGE C+ ++ Sbjct: 170 ASDVTGIAERSAAKLRSFGIVTCLDLARADPTQVRSVLTVTGERLCYELRGEKCVPIQSK 229 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P + + S G +D P+++ A C R E+L + + + FA++ Sbjct: 230 RPLHKIVSRGGSIGAPSSD-PAIQWAWC---VRNLERLIEALESYGLCAGKLA---FAVD 282 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVML--GDFFSQ----- 353 + A+ LT D++ A R L W+ + Q G++L +F+ Sbjct: 283 YKHGPTCAADTRLTFPTTRFDMLVEAARHL---WK---QVQMQGLLLYRMHYFASELQYP 336 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 G QL LF+ + L + +N++ GR L Sbjct: 337 GPRQLGLFEPTI----RDGLHALKSEINSRHGRFAL 368 >UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LSC9_SYNAS Length = 435 Score = 137 bits (344), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 114/414 (27%), Positives = 184/414 (44%), Gaps = 21/414 (5%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 D +AF+ SCE P+L GKP++ G V + AK GV G P + + + C Sbjct: 19 DGDAFFTSCEEAIHPELRGKPIIA-GGERGIVACASYAAKKQGVMRGVPLHQARKM---C 74 Query: 66 -GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDLTDFGRE 122 G+V S+YE Y+ S R+ + + +P+VE YSIDEAF D+TG+R Sbjct: 75 PGLVILPSDYETYSLFSRRMFNVMRRFTPQVEEYSIDEAFADITGMRRPLRASYETIAVN 134 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+ + + +TV VG++ TK LAK+A+ R+ G + + + LPV+ Sbjct: 135 IKNEIARELGITVSVGLSITKVLAKVASK-----HRKPNGFTCIPG-KSIAIYLEHLPVE 188 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL-EEFA 241 +WGIG + L MG++T L+ A ++K F RELRG+ + E Sbjct: 189 KIWGIGHATASYLHKMGVRTALEFARLPEVLVKKRFTKPGVEIWRELRGDSVYPVCAEEK 248 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 I +++F D + + A K R H I+ F+K + F+ Sbjct: 249 SLYASISKTKTFSPASGDADYLFAHLMRNLESACIKARRYHLAASRIAAFLKRNDFS--- 305 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y G ++L P+ ++ A +++ G Y+ G++L + Q LF Sbjct: 306 -YAGR--EIRLNRPSVYPLELSIALRNLFIDVYRPGTLYRSTGIVLLELSGDSGTQYTLF 362 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYF-AGQGIQQQWQMKRAMLSPRYTTR 414 DD + V D + AK G+ +L+ A I+ + KR + R TR Sbjct: 363 DDVVRADRVRDIYRVTDEVGAKYGKHSLHLGASHFIELLGRGKRGEPTARERTR 416 >UniRef50_A8GJ69 UV protection protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GJ69_SERP5 Length = 136 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 92/158 (58%), Gaps = 30/158 (18%) Query: 263 MRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDI 322 M QA+C Y AAEKLR E QYCR I+ F++TSPFA N+PYY NS SV+L+ TQD D+ Sbjct: 1 MHQAVCQYVEHAAEKLRGERQYCRHITVFLRTSPFASNDPYYANSNSVQLMLATQDKCDV 60 Query: 323 --INAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTL 380 + A ++ +A W+ G+RYQ+AG+ML DF D N Sbjct: 61 VAVAGAVKTHEATWRDGYRYQRAGIMLNDF----------CDIN---------------- 94 Query: 381 NAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 G G ++FAGQGI + W M+R +LSP Y TR SD+ Sbjct: 95 --HSGLGNVWFAGQGINKAWAMRRELLSPSYITRLSDI 130 >UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PAP1_CLOTS Length = 414 Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 118/420 (28%), Positives = 195/420 (46%), Gaps = 59/420 (14%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL---SNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+NAFYASCE L GKPVVV S G V+ + EA+ G+K G P ++ + L Sbjct: 7 IDMNAFYASCEQSKDKSLKGKPVVVAGDPSKRHGIVLTASYEARKYGIKTGMPNWQARTL 66 Query: 62 FRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL---- 116 C F +++ Y S ++++ L+E SP VE +SIDEA+ D+TG C DL Sbjct: 67 ---CNDAIFLKPDFDSYIQYSIKMINILKEFSPLVEQFSIDEAWVDVTG---CEDLFGSP 120 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + +I++ + L +GI++ K +AK+A+ K G+ +L LE+ + ++ Sbjct: 121 IEIAHKIQSRIKDSLDLPCSIGISENKLVAKMASELKKPL-----GITELP-LEKIKDMI 174 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 L V+++ IG SKKL + GI T+ DLA+T + F+ F G+P Sbjct: 175 WPLDVENLIWIGSARSKKLKSFGINTIGDLANTPMTFLINLF------------GKPGKD 222 Query: 237 LEEFA------PTKQEIICSRSFGERI------TDYPSMRQAICSYAARAAEKLRSEHQY 284 + FA P + I ++SFG I TD +++ S + ++R ++ Sbjct: 223 IYYFANGIDLSPVRPYAITAKSFGNTITLPRDYTDIEDIKRGFLSLSEMVGSRMRKQNFM 282 Query: 285 CRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAG 344 + +S +K + F + + + T + DI NAA + + + + G Sbjct: 283 GKTVSITVKDNNFK-------SITRSRTIDYTVLTEDIFNAAMKLFKENYDTNFKIRMLG 335 Query: 345 VMLGDFFS-QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG-----RGTLYFAGQGIQQ 398 V + + QL LF NA ++L +D + K G RG L G+ I+Q Sbjct: 336 VSVSNLVKIDENIQLCLF-QNAKYENLKKLNYAIDMIRDKYGFDSISRG-LILTGEKIKQ 393 >UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomycetales RepID=D1C0B2_XYLCX Length = 430 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 118/406 (29%), Positives = 185/406 (45%), Gaps = 28/406 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+A CE RP+L G PV+V G V+A EA+ GV+ P R Sbjct: 26 VDMDAFFALCELARRPELRGLPVIVGGRGRGVVLAATYEARVFGVRSAMPMVSA---MRL 82 Query: 65 CG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGRE 122 C V ++ Y D+S VM+T+ E++P VE SIDEAF D++G R T G Sbjct: 83 CPQAVIVPPDHRRYTDVSRSVMATMAEITPIVEQISIDEAFLDVSGARRRLGPPTVIGAR 142 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +RA V +T VGIA+ K LAKLA+ AK G++ + + E + LPV Sbjct: 143 LRAHVQAVHGVTCSVGIAKNKFLAKLASTHAKP-----DGMLLVPD-EASVPFLRTLPVG 196 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR--GEPCLQLEEF 240 +WG+G + L GI +V LADTD+R ++ VV + +L +P Sbjct: 197 ALWGVGEKTEAVLARWGITSVAQLADTDVRTLQAAVGVVHGAHLHDLAWGRDP----RPV 252 Query: 241 APTKQE--IICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 PT++E I +FG D ++ + + A + R + R ++ ++T+ F Sbjct: 253 VPTERERSIGNETTFGSDQHDLAAVEARLLELCDKVAARCREQGVVTRTVALKVRTNDF- 311 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVA- 356 + S L PT +RD+ A L A+ G + GV + + G A Sbjct: 312 -----RTLTRSRTLDGPTDVARDLYRVARELLAAVDLRGLPVRLVGVRAENLQERAGTAQ 366 Query: 357 QLNLFDDNAPRPGSE-QLMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 QL L + + RP + + +D + + G ++ G+ Q Sbjct: 367 QLTLDEAASERPQAHREAELALDAVRERFGTRSIGLGAGGVASARQ 412 >UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermophilum RepID=DPO4_SYMTH Length = 361 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 27/359 (7%) Query: 6 DVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+AS E P L GKPV+V N+ G V + EA+ GV+ P ++ R Sbjct: 11 DMDAFFASIEQRDNPRLRGKPVIVGGSPNSRGVVSTCSYEARRFGVRSAMP---SREALR 67 Query: 64 RCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 C F N+ YA + +V + + + +E SIDEAF D++G +D RE Sbjct: 68 LCPQAVFIRPNHAKYAAVGRQVRAIMRRFTDVIEPLSIDEAFLDVSG----QDAVRVARE 123 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 ++ + HLT G++ K LAKLA+ Q+ G + + ER ++L+ LPV Sbjct: 124 LKEAIRAELHLTGSAGVSYCKFLAKLASDM----QKPDG--LTVITWERAQELLPTLPVR 177 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG---EPCLQLEE 239 +WG+G + L A+GI T DL D +RKHF + + RG P + E Sbjct: 178 KLWGVGPASEQALHALGIYTCGDLLAYDPDTLRKHFGKRADELILLARGIDPRPVVPYRE 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +E +F TD + + + YA AE+LR + Y R ++ IK + F Sbjct: 238 AKSIGEE----NTFPVDQTDREYLSRLLERYADNLAEELRRQGLYARTVTVKIKWNVFVE 293 Query: 300 NEPYYGN----SASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 P G+ + S L PT D+R I A + G + + G+ + + QG Sbjct: 294 GGPKGGDFLQITRSQTLPMPTNDARTIGRVAREIFARVEWEGRKVRLLGLSVHNLVKQG 352 >UniRef50_C9Y1T2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y1T2_CROTZ Length = 91 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/93 (66%), Positives = 75/93 (80%), Gaps = 4/93 (4%) Query: 330 LDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 +DA+W+ GHRYQ AGVM+GD F QGVA+ FD+NAPR SE LM++MD LN ++GRGTL Sbjct: 1 MDAVWRDGHRYQMAGVMMGDLFRQGVAR---FDENAPRVNSEALMSLMDKLN-QQGRGTL 56 Query: 390 YFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRVK 422 YFAGQGIQQ WQMKR MLSP YTTR +D+ V+ Sbjct: 57 YFAGQGIQQAWQMKREMLSPCYTTRLADVPTVR 89 >UniRef50_C3KFQ7 Putative ultraviolet light resistance protein B n=2 Tax=Pseudomonas RepID=C3KFQ7_PSEFL Length = 179 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 58/104 (55%), Positives = 73/104 (70%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F+L D N FY SCE +FRP+L GKPVVVLSN+DGC++A EAK LG+KMGDP+FK + Sbjct: 9 VFSLVDANKFYCSCERIFRPELRGKPVVVLSNSDGCIVACTNEAKELGLKMGDPYFKIRA 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAF 104 R GV FSSNY LY ++S+R+ L VE YSID+A Sbjct: 69 FLERNGVAAFSSNYTLYGELSHRMAMATASLVSAVEQYSIDDAL 112 >UniRef50_C7CNB5 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DM4 RepID=C7CNB5_METED Length = 455 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/170 (42%), Positives = 102/170 (60%), Gaps = 5/170 (2%) Query: 111 RNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 R C DL R TV R + V VGI+ TKTLAK+AN AKK +GGV L + Sbjct: 38 RECGDLLRRQR----TVSGRCEIPVCVGISTTKTLAKVANRTAKK-DPLSGGVCYLPDEA 92 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 Q ++ + + DVWGIGR ++ L A+ I + L L D + IR+ FNVVL+RTV EL+ Sbjct: 93 SQTAALAKMELGDVWGIGRGLAPPLAALSITSPLKLRDANPTRIRERFNVVLQRTVMELQ 152 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS 280 G PCL LE+ +P + I CSRSF + + + +A+ +Y + AA+K+R+ Sbjct: 153 GTPCLDLEQDSPDSKTICCSRSFARAVEGFDELAEALTAYTSYAAQKMRA 202 >UniRef50_B1YIX5 DNA-directed DNA polymerase n=2 Tax=Exiguobacterium RepID=B1YIX5_EXIS2 Length = 441 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 112/407 (27%), Positives = 184/407 (45%), Gaps = 28/407 (6%) Query: 5 CDVNAFYASCETVFR--PDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D +FYASCE +R P L K VV L+ + ++A + K LG+K ++ + Sbjct: 15 VDSVSFYASCECRYRNLPPLTTKLAVVSDLTRSGSVILAASPALKQLGIKTASRLYQIEQ 74 Query: 61 L-FR-RCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGV-RNCRD 115 L +R R +V Y S V+ L + +P + IYSIDE F D++G R Sbjct: 75 LPYRERKQIVLVEPRMLAYMKTSIEVLDVLHQFAPPDAIRIYSIDENFVDMSGTERLFGS 134 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLA-NHAAKKWQRQTGGVVDLSNLERQRK 174 T+ +I+ + Q+T + V +GI +AKL + K+ G D+S + Sbjct: 135 DTETAWKIQTAIWQQTGIPVRIGIGPNNVIAKLVLDLRGKREGIAQCGYADVS------R 188 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV---LERTVRELRG 231 L+ PV +WG+GR + + L MGI T+ DLA + + + F V+ L + G Sbjct: 189 LLHDFPVRKMWGVGRMMEQHLSVMGIHTIGDLAAAPVEDLHERFGVIGAELWHHAWGIDG 248 Query: 232 EPC----LQLEEFAP-TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 P + L AP TK+ I + Y +R + A+ A ++R +Q Sbjct: 249 SPTIIDPMTLFRTAPDTKRTIGHGVTLMRDYYQYEQIRLVLAELASDVAARVRFSNQVGW 308 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVM 346 + ++ S + G S ++L PT D R ++ + + W G + V Sbjct: 309 TVHLGVRYSRHVARD---GFSKQLRLPYPTADERLLLRHILQLFEPNWLDGEPVRFLSVA 365 Query: 347 LGDFFS-QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 LG QG QL+LF+DN ++L+ +D +N + G+GT+ A Sbjct: 366 LGQLTPDQGTLQLSLFEDNTKVWRRKRLLKAIDHVNLRYGKGTIRLA 412 >UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_CARHZ Length = 391 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 111/399 (27%), Positives = 178/399 (44%), Gaps = 42/399 (10%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+A+ E P+L GKPV+V + G V A + EA+ GV+ ++ Sbjct: 9 VDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWEAA--- 65 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDFG 120 R C F N++ Y ++S ++ E +P VE S+DEA+ D+TG + + G Sbjct: 66 RLCPHGIFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFGPGAEIG 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK---WQRQTGGVVDLSNLERQRKLMS 177 ++I+ + + T LT VG+A K LAKLA+ K + + V+D ++ Sbjct: 126 KKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVREDNVLDF---------LA 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV+ +WG+G ++ ++L+ MGIKTV D + F+RK F V+ + RG + Sbjct: 177 PLPVEMLWGVGEKMKERLNDMGIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRG---IDF 233 Query: 238 EEFAPTKQEIICSRSFGERIT------DYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 E P + +S G+ IT D + + LR E Y IS Sbjct: 234 REVIPER----VPKSLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLRREGFYAGGISVK 289 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I+ S F Y +S + PT + A R + + GV Sbjct: 290 IRLSSFIT---YTRHS---RFFEPTWMDDVLYREAKRLFLENYHGELPVRLVGVTATPLV 343 Query: 352 SQGVA-QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 G Q++LF ++ R E L ++D LN K G T+ Sbjct: 344 PVGGGRQISLFGEDLRR---ENLYPIIDRLNHKYGNKTV 379 >UniRef50_A6C5Y5 UMUC-like DNA-repair protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C5Y5_9PLAN Length = 405 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 114/385 (29%), Positives = 168/385 (43%), Gaps = 26/385 (6%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 D + FY SCE + L G P VL N CVIA++ E KA GVK G P ++ K L C Sbjct: 10 DSDCFYVSCERIRSYSLRGVPCGVLGNQGACVIAKSYELKAYGVKTGHPIWEAKKL---C 66 Query: 66 GVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDLTDFGRE 122 F ++ Y +S R++ L+ +SP VE YSIDE F D + ++ L R Sbjct: 67 PHAVFVKRDFRWYEVISRRLLDLLKTVSPLVEYYSIDEMFFDASELQRYFRLPLEAATRA 126 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ-RKLMSALPV 181 ++ V + + V +GIA +++LAKL + AAK + Q +ER + + + PV Sbjct: 127 LQTLVQEEIGVPVSIGIAPSRSLAKLGSDAAKPFGIQV--------IERDCERFLRSQPV 178 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 ++ GIG R +KL I T D D IR + E ELRG+ ++ Sbjct: 179 GELCGIGSRSERKLRDRNIHTCWDYRQADRLLIRNLLTIKGEALWWELRGDAVNPIQTTR 238 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 P + I S G + D +R R E L Y R IS I + AL Sbjct: 239 PPHKAIARGGSCGGKTMDADRIRAWAVRNIERLIEALDHHRVYARHISLQIDANKTAL-- 296 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 + G + L P+ R I +A L A H ++ + + Q +LF Sbjct: 297 -WLGRTP---LAVPSASFRMIYDAVMPML-ATAPTTHPVSHMHIIAENLTWRDRIQKSLF 351 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGR 386 ++A P L + +N K GR Sbjct: 352 FEDAQSP----LDQIKRDINQKLGR 372 >UniRef50_Q0F3E1 ImpB/MucB/SamB family protein n=2 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3E1_9PROT Length = 366 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 163/364 (44%), Gaps = 16/364 (4%) Query: 37 VIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVE 96 +IA+ +AKA G+K G P + K L S+++ Y +S ++ S L SP +E Sbjct: 1 MIAKTYDAKAAGIKTGMPIWDAKKLMPHA--TYLSADFRFYGLISEKMFSILRRYSPDME 58 Query: 97 IYSIDEAFCDLTGVRNC--RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK 154 +YSIDE F DL G R +D +IR V + +TV VG++ T+ LAK+A+ Sbjct: 59 VYSIDEGFLDLNGTRQLWKKDYKGIAHDIRRAVHREVGITVSVGVSVTRILAKIAS---- 114 Query: 155 KWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFI 214 ++ + G + S++ + + + + DV GIGR L+ I T +D + DI I Sbjct: 115 EYNKPNGVTIVPSSMIQL--FLKRVKLSDVCGIGRNRLATLNKFSIHTPMDFVNADIEVI 172 Query: 215 RKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARA 274 ++ E++G + LE A + + + S GE + ++ + + +R Sbjct: 173 KQLLGKAGTDLWHEMKGTMAIGLELHAQLPKSMARTASMGEVTGNRKTIISHLIRHTSRL 232 Query: 275 AEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW 334 A +L ++ + I+ F++ F+ SA PT + + + + ++ Sbjct: 233 ATELVTKRLLTKRITIFLRLKDFS------SLSAQADFEYPTNNYFRLSRSVQAMMADLY 286 Query: 335 QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 Q Y+ G++ + + +LF + MD +N K GRGTL AG Sbjct: 287 QPNELYRACGIIAESITNAEDSMPDLFGVMKTDAKQASIFATMDDINKKYGRGTLRVAGA 346 Query: 395 GIQQ 398 + Sbjct: 347 HVSN 350 >UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GJQ9_KOCRD Length = 412 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 182/396 (45%), Gaps = 30/396 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++ FY E + P G+PV+V S V++ + EA+ GV P + + Sbjct: 20 VDMDMFYVGVELLDAPQHRGRPVIVAGSGPRSVVLSASYEARRFGVHSAMPVSQARA--- 76 Query: 64 RC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFGR 121 RC V + E YA S VM ++ RVE S+DEAF D++G +R C + R Sbjct: 77 RCPSAVLLEPHREAYAHYSRIVMDIFRSVTDRVEQLSVDEAFVDVSGAIRRCGPPVEIAR 136 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 +R T+ QRT LT VG+A+ KT+AK+A+ K G++ ++ E R ++ LPV Sbjct: 137 GLRRTIQQRTGLTASVGVAENKTVAKIASAHCKP-----DGLLVVAP-EHTRAFLARLPV 190 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR--GEPCLQLEE 239 D +WG+GRR S+ L A G+ TV D+A T + + V +++L +P Sbjct: 191 DRLWGVGRRTSETLRAAGLATVGDIAGTPLPRLHALVGVASGSHLQQLALGHDP----RP 246 Query: 240 FAPTKQE--IICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 PT++E + R+F +++ +++ + A +LR + ++ + F Sbjct: 247 VTPTREEKSLGAERTFQTDLSETAELKRVLLGLCHETAARLRRHGLRAGRVGLKLRYADF 306 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA- 356 S S L P + D+ A LDA+ + + G+ A Sbjct: 307 TT------ISRSRTLGHPVTSAHDLYTEAAGLLDALGRRPQAVRLVGIRAEKLVGADHAL 360 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 QL+L +A +E+ MD ++ + G GT+ A Sbjct: 361 QLSLDGRDAEWGAAEE---AMDRVHHRFGPGTVRPA 393 >UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ51_9FIRM Length = 395 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 179/389 (46%), Gaps = 30/389 (7%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQK 59 ++ D+NAF+AS E + P L GKP+VV V++ + EA+A G+ K Sbjct: 4 IYFHVDLNAFFASAEILRDPSLKGKPIVVSGQTKRSVVSTASYEARAYGIHSAMSIILAK 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTD 118 L ++ +Y Y +S+ M+ + SP +E SIDE + D+T V + + D Sbjct: 64 KLCPDLEII--EGHYSYYRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQYKHPLD 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++ + Q+T L +GI LAK+A+ K G+ L + + KL Sbjct: 122 LAVLLQKAIYQKTGLGCSIGIGPNLFLAKMASDMKKPM-----GITVLRIRDVEAKLW-P 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTD-IRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV + GIGR+ K++A+GIKT+ DLA+ I+ + K F + + + RG L Sbjct: 176 LPVHKMRGIGRKTLPKVEALGIKTIGDLANYQPIQDLGKIFKNSTDSLLEKCRGIDRTPL 235 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E ++ + S + E I+DY +R + S + + +L E + R IS I F Sbjct: 236 -ELDWQRKSLGVSETLLEDISDYEELRGLLRSLSKKLHHQLEKEKRIGRAISIRITYYNF 294 Query: 298 ALNEPYYGNSASVK---LLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF--S 352 S SVK L P DI + A + D W+ + G+ + DF Sbjct: 295 R----NVSRSLSVKQGIYLEP-----DIFDLALQLFDQYWEYDEPVRLLGITITDFMDEH 345 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLN 381 Q + QLNLF++ P + ++D +N Sbjct: 346 QAIQQLNLFEEEKIDPTQQ----IIDEIN 370 >UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECH9_9ACTN Length = 417 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 115/404 (28%), Positives = 182/404 (45%), Gaps = 30/404 (7%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQKD 60 L D++AF+AS E + P+ GKP++V + D G V + EA+ GV P + + Sbjct: 27 GLMDLDAFFASVEMLDHPEWRGKPLIVGGDADSRGVVSTCSYEARRFGVHSAMPSAEARR 86 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDF 119 L + + +++ Y ++S +VM+ L + +PRVE SIDEAF D+T R D Sbjct: 87 LCPQA--IWTHGHFDRYREVSAQVMAILADETPRVERVSIDEAFIDITPGRFAPEDPLQV 144 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I V +T +G+ KT+AK+A+ K + G+ + QR ++AL Sbjct: 145 ARRISDRVAA-LGVTCSIGVGCNKTVAKIASERDKPF-----GLTIVRPGTEQR-FLAAL 197 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + GIGR ++L M I T+ +L+ + F V ER + G L++ E Sbjct: 198 PVSAMSGIGRSAEERLRRMRIYTLGELSRAPESTLASIFGVNGERMRQRALG---LEISE 254 Query: 240 FAPTKQE-----IICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 +E + R+F + +T+ + AI +LR + ++ +K Sbjct: 255 VTSLDEEREVKSVSNERTFAKDLTERGDIEAAIALLGESVGRRLRRQGLTGATVTLKLKY 314 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 S + G +A +L PT D + A LD IWQ G + AGV + DF QG Sbjct: 315 SYGS------GRTAQRRLPHPTDDENIFVAVALELLDKIWQKGMHVRLAGVGMSDFDHQG 368 Query: 355 VAQLNLFDD----NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 Q +LF + A L +D + K G L F Q Sbjct: 369 GIQTDLFCEIDGRGAQSSDRRDLSVAIDAVRDKFGDTALSFGRQ 412 >UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8G1R4_DESHD Length = 423 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 113/403 (28%), Positives = 178/403 (44%), Gaps = 33/403 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQ 58 L D N++YASC P+L GKP++V N G ++ + EA+ GVK P F+ Sbjct: 16 IVLFDANSYYASCHQAVNPELQGKPLLVAGDPRNRTGIILTASYEARFYGVKTAMPLFQA 75 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVRNCRDL 116 L V S ++ LY D+S ++ +E + +E+ S+DE F D G Sbjct: 76 LKLCPEA--VVLSPDFRLYLDLSRKMWEIVERYTDEDHIEVVSVDECFADFRGSHLLFGS 133 Query: 117 TD-FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL------ 169 T+ R ++ +L+ L V VG++ K AKLA+ +QR V L Sbjct: 134 TEEIARRVQKEILEELGLGVSVGVSYCKIFAKLASD----YQRDPKTRVKLPRSFTVIAP 189 Query: 170 -ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE 228 E + K+ L V ++ GIGR+ K+L +GI+T+ DLA + +RK F V + Sbjct: 190 GELESKVW-PLGVGELSGIGRQTEKQLADLGIRTIGDLAQASPQALRKGFGVYGAKLYAW 248 Query: 229 LRG--EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 G E + E+ A I S + + ITD + + A K+R E + Sbjct: 249 ANGRDERPVTPEDQA-KDHSIGRSITLPQDITDPEQGTEVLLFLADSVGRKVRREETKAQ 307 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVM 346 ++ +K + F + S L PT DS D+I + L A W G + G + Sbjct: 308 TLTVQVKDAEFKT------RTYSTTLFEPT-DSTDVIYRESLKLLAKWPQGKPIRLLG-L 359 Query: 347 LGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 +G+ QL+LF + + +L +D L K G G L Sbjct: 360 TASRLQKGIEQLSLFQEESEE--QTELDRTVDELRDKYGSGIL 400 >UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF38_9DELT Length = 409 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 121/432 (28%), Positives = 192/432 (44%), Gaps = 45/432 (10%) Query: 7 VNAFYASCETVFRPDLWGKPVVV-LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 ++AF+AS E P L GKPV+V + G V A + EA+ G P + RRC Sbjct: 1 MDAFFASIEQRDDPRLRGKPVLVGHAGKRGVVAAASYEARRFGCHSAQPMAVAR---RRC 57 Query: 66 G-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE-I 123 V +E+Y +S + LE +P VE SIDEAF D++G + E I Sbjct: 58 PQAVIVPGRHEVYLGVSAELFEILEGFTPVVEGLSIDEAFLDMSGTQRLHGPPRVAAERI 117 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 R TV +R LT VGIA K +AK+A+ Q + G+ + R+R + LPV + Sbjct: 118 RQTVAERLRLTCSVGIASAKFIAKIASD-----QDKPDGLT-VVEPGRERAFLHRLPVRE 171 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL------ 237 +WG+G R + L+ G++T+ D+A+ + LER + E G QL Sbjct: 172 LWGVGPRTQEVLERYGVRTIGDIAELGLE--------TLERDLGE-HGRHLHQLSVGVDP 222 Query: 238 EEFAPTKQ--EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +P ++ ++ +FGE + P + + + R A++L ++ + R + ++ + Sbjct: 223 RPVSPGRERKQVSHENTFGEDLRSRPEIEDWLLRQSTRVADRLVAKGLHGRKVHLKLRDA 282 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH----RYQKAGVMLGDFF 351 F + L PTQ++R I A LD + G R + GV + DF Sbjct: 283 SFTT------WTRQCSLDEPTQEARVIFARARALLDRLEAEGKLRALRIRLTGVGVSDFR 336 Query: 352 SQGVA-QLNLFD-DNAPRPGS----EQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 A QL L + A P + E + V+ + + G L AG G ++ A Sbjct: 337 RDAPARQLELLPVEGAAEPATDDRGEAVQDVLSEVRRRFGGKALGLAGVGGIRREARDDA 396 Query: 406 MLSPRYTTRSSD 417 P +TR D Sbjct: 397 GAVPDLSTRIDD 408 >UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3I3_JONDD Length = 413 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 162/345 (46%), Gaps = 21/345 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E RP+L G+PV+V V+A + EA+ LGV+ P + + L Sbjct: 26 VDMDAFYASVEIAQRPELRGQPVIVAGGERSVVLAASYEARELGVRSAMPTQRARLLAPH 85 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFGREI 123 V + + YA +S VM L+ ++P VE SIDEA+ D++G+R + L+ +E+ Sbjct: 86 A--VWVAPRHHEYARISRSVMDYLDTITPWVEQVSIDEAYLDVSGIRGPQGTLSARAQEL 143 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 RA V +T VG+A K LAKL + AK G++ L + Q + ++ LP+ Sbjct: 144 RAQVKAHHGVTCSVGVAANKFLAKLCSTQAKP-----DGLLVLPRGQEQ-EFLNLLPIGA 197 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVL-ERTVRELRGEPCLQLEEFAP 242 + GIG + ++L G+ T+ D+A + ++ L R + RG + P Sbjct: 198 LMGIGDKSERRLKQHGLHTIRDVAALEPSYVVALLGATLGNRLIHLARG---IDDRPVTP 254 Query: 243 TKQE--IICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 T+ E + +F + +R + S A +LRS R IS I+ F Sbjct: 255 TRVEKSVGAEHTFAQDEGSREVLRATVRSLADTVTSRLRSRGLLARTISVKIRDVNF--- 311 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGV 345 + + V L +P+Q + + A +D G R + GV Sbjct: 312 ---HTITRHVTLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLLGV 353 >UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX85_SYNWW Length = 393 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 142/300 (47%), Gaps = 20/300 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 CD++AF+AS E + P L GKPVVV ++ G V + EA+ G++ P + + Sbjct: 10 CDLDAFFASVEQLDNPSLRGKPVVVGGSMHSRGVVSTCSYEARKFGIRSAMPIAQA---Y 66 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL----T 117 R C F N Y ++S +V S L SP EI SIDEAF D++G C L Sbjct: 67 RLCPQAVFLPVNMPRYLEISKQVFSILSRYSPIKEIISIDEAFLDISG---CSSLYGSPE 123 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 G I V LT+ VGI+ K LAKLA+ K G+ ++ E +L+ Sbjct: 124 KIGCLINEQVYSELGLTISVGISYNKFLAKLASDMDK-----PNGLRIITESE-ALELLR 177 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV +WGIG++ + LD +GIKT+ D+ D+ ++ R EL + Sbjct: 178 PLPVSRIWGIGQKTEQSLDKLGIKTIGDIQDSPPEWLEDKIGSA-GRLFWELAHGIDRRA 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E ++ + +F E I D + + I +AA KLR E + I+ ++ S F Sbjct: 237 VEPEHERKSLGREETFPEDINDTAYLEKLIVQFAAELCRKLRQEALFAATITIKLRYSNF 296 >UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX0_BREBN Length = 413 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 114/417 (27%), Positives = 180/417 (43%), Gaps = 37/417 (8%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQKD 60 L D+ +FYAS E P+L KP+VV + + G V+A AK+ GV + ++ + Sbjct: 11 LIDMQSFYASIEKGANPELRNKPIVVAGDPERRSGVVLAACPIAKSYGVVAAEALWQAQQ 70 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 R+ +V E+Y +S ++ E + +VE YSIDE F D+TG V D Sbjct: 71 KCRQ--LVVVRPRMEMYIRISMQITRIFEAFTDKVEPYSIDEQFLDVTGSVHLFGDPLQM 128 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLA--NHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +IR V T + VGI + K LAK+A N A K+ + GV L E + Sbjct: 129 AAQIRQRVWMETGINCRVGIGENKVLAKMACDNFAKKREE----GVFWLKR-ETLADTLW 183 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV---VLERTVRELRGEPC 234 LP++ ++G+G R+ + MG+ + LAD + +H+ V VL RT + P Sbjct: 184 KLPIEKLFGVGSRMKRHFHRMGVYQIGQLADMRPAILTRHWGVNGEVLWRTAHGIDDSP- 242 Query: 235 LQLEEFAPTKQEIICSRSFGERIT---DYPS---MRQAICSYAARAAEKLRSEHQYCRFI 288 + L+ + K G +T DY + ++ + + R + + Sbjct: 243 VALDSYDSQK-------GIGHHMTLPRDYHTASEIKVVLLELCEEVCRRARKKELMGSVL 295 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 S + + A G +KL T D+ + AA D WQ + GV LG Sbjct: 296 SVGCRGADLAAGT---GFGRQMKLTEQTNDAMTLYEAACFLFDRHWQETP-VRSIGVNLG 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 V QLNLF DN R L MD + ++ G+ + A ++ +RA Sbjct: 352 QLVPDNVVQLNLFTDNHKR---RSLAQAMDDIRSRYGQDAILRAASVLEAGQAKERA 405 >UniRef50_B2I406 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I406_ACIBC Length = 261 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 9/202 (4%) Query: 215 RKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARA 274 +K F+VVL RTV ELRG PC+++E P++++II S+SFG+R+T +++AI Y A Sbjct: 3 KKQFSVVLARTVMELRGIPCIEIEHSPPSQKQIISSKSFGQRVTALEDLQEAISRYTQDA 62 Query: 275 AEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW 334 +LR + C I F ++PF YY S++ + PT + ++ AA + ++ ++ Sbjct: 63 FRRLRKANLLCGCIIVFAHSNPFDNKRKYYYKSSTSGFVVPTDNVLTLVEAAVKLIEKVY 122 Query: 335 QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR-----GTL 389 G Y+K G++L + + +L D E LM +++ K G+ GT Sbjct: 123 TEGIEYKKCGLILTGLEPKSLFTYDLLTDMDDIAKQENLMLAFESITNKFGKKKLAVGTC 182 Query: 390 YFAGQGIQQQWQMKRAMLSPRY 411 F ++W M R LS Y Sbjct: 183 MFP----DRKWTMCRNSLSQNY 200 >UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDP3_9FIRM Length = 395 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 99/393 (25%), Positives = 177/393 (45%), Gaps = 34/393 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+NAF+ASC P GKP++V + G ++ + EA+ GVK ++ K L Sbjct: 7 VDMNAFFASCHQAQNPQWQGKPLLVAGDPQKRHGIILTASYEARKFGVKTAMAVWQAKKL 66 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT-DFG 120 + + S +++LY+ S R+M+ +E+ +P VE +SIDEA+ D+TG T + G Sbjct: 67 CPQG--IYISPDHKLYSAYSKRIMAIMEDYTPLVEPFSIDEAWLDVTGSARLFGTTEEIG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK------WQRQTGGVVDLSNLERQRK 174 R ++ +L T + VGI+ K LAK+A+ K W R + Sbjct: 125 RLLQQRILDETGIPCSVGISGNKFLAKMASERQKPQGFTILWPRDVP------------E 172 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 ++ LPV+++ G+GR+++ L MGI+T+ +LA +R + F V E G Sbjct: 173 VLWPLPVEEMVGVGRKMAPALHEMGIETIGELAAMPLRLLVSRFGVAGESLHHLANGRDD 232 Query: 235 LQLEEFA-PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 ++ T + + S + I D + + + + + +LR R ++ +K Sbjct: 233 SPVDPTVFDTVKSVGNSLTLPRDINDPEDVARVLLKLSEKVGRRLRQSGNVARTVTLTVK 292 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-S 352 ++ + + S L PT + I A ++ + + GV + + + Sbjct: 293 ------DQNFVSVTRSRTLHEPTGFTDVIYKTAVDIHQKQFEPWRKVRLLGVSVSNLLPA 346 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 G QL+LF + R E L V D + + G Sbjct: 347 DGGVQLSLFGASEER--MENLTRVTDRIRDRYG 377 >UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomycetales RepID=C5BW73_BEUC1 Length = 415 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 106/391 (27%), Positives = 176/391 (45%), Gaps = 20/391 (5%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+AS E + PDL G+PV+V + G V+A EA+A GV P + + L + Sbjct: 26 VDMDAFFASVELIRAPDLRGRPVIVGGEHRGVVLAATYEARAFGVHSAMPMTRARALCPQ 85 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGREI 123 V ++ Y ++S VM L +++P +E S+DEAF D++G R I Sbjct: 86 A--VVIPPDHARYEEVSRVVMGLLADVTPVLEQVSVDEAFLDVSGARRRLGSPVAIATAI 143 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 R+ + + + VG+A TK LAKLA+ AK G++ L + +LPV Sbjct: 144 RSRIREVAQIPASVGVASTKFLAKLASQTAKP-----DGLL-LVPEAASVPFLHSLPVGA 197 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPT 243 +WG+G R + +L GI++V LA T +++ + +L + A Sbjct: 198 LWGVGERTAAQLREWGIESVEQLAHTPPDVLQRRLGRAGGARLYDLAWNRDPRPVTVARV 257 Query: 244 KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPY 303 ++ I +F +TD + + + A R A +LR R ++ ++ S F Sbjct: 258 EKSISSEHTFVTDVTDAAELGRTLLEQAHRCARRLRRGGFLARGVTIKVRMSDFTT---- 313 Query: 304 YGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV--AQLNLF 361 + S +L P+ + D+ AA L A+ + GV + + QL L Sbjct: 314 --LTRSRQLDHPSDVAHDVYAAARALLAAVTIPRDGVRLLGVRVDQLTAAAATPVQLALD 371 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 DD APR ++ MD + + G L A Sbjct: 372 DDAAPR---REVEVAMDDVRDRFGADALGAA 399 >UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiales RepID=A9KNH1_CLOPH Length = 400 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/396 (26%), Positives = 181/396 (45%), Gaps = 36/396 (9%) Query: 6 DVNAFYASCETVFR----P---DLWGKPVVVLSNN---DGCVIARNAEAKALGVKMGDPW 55 DVN+ + S E+V R P DL P V + G V+A++ +AK+ G+ G+P Sbjct: 12 DVNSAFLSWESVHRLAADPESIDLRTIPSAVGGDKQSRHGIVLAKSTQAKSFGIVTGEPL 71 Query: 56 FKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR 114 ++C +V N+E+Y S R+M+ L E +P + +SIDEAF D+T + Sbjct: 72 ---THALQKCPSLVVVPPNFEVYTRYSERLMNLLSEYTPTLNQFSIDEAFLDMTDTYHLF 128 Query: 115 DL-TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR 173 D +IR VL+ TV +GI+ K LAK+A+ K + L E Sbjct: 129 GAPMDIANQIRDRVLKELGFTVNIGISTNKLLAKMASDFKKPNLCHS-----LFPSEIPE 183 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKH----FNVVLERTVREL 229 K M LPV++++ +G+ K +GI+++ DLA T++ ++ H ++ ++ + Sbjct: 184 K-MWPLPVEELFFVGKSAKAKFGILGIRSIYDLAHTNVNILKTHLGNKYSALIHEYANGI 242 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 EP +E P + S + + + D +Q + + + +LRS + C I+ Sbjct: 243 DEEP---VEVTDPKAKGCGNSITLSQDVIDNAIAKQVLLALSETVGARLRSSNVSCSCIT 299 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 IK + F + Y + L T + I AA R D W + G+ Sbjct: 300 VEIKYTNF---QTYTHQTV---LPHQTNTTATIYEAACRLFDEFWD-NSPIRLLGIRTTK 352 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 +Q++LFD+N ++L + +D++ K G Sbjct: 353 LDDTDFSQISLFDNNQ-SDKFKKLDSAIDSIRNKYG 387 >UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibrio RepID=B8DIF6_DESVM Length = 481 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 163/361 (45%), Gaps = 22/361 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+AS E + P L GKPV V ++ G V A + EA+ GV+ P R Sbjct: 9 IDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALP---MSTALRL 65 Query: 65 CG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGRE 122 C ++ YA++S+R+M L E SP VE S+DEA+ D TG+ R + + G Sbjct: 66 CPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMGMA 125 Query: 123 IRATVLQRT-HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++A VL T LT VG A K LAK+A+ K G+ L E + + LPV Sbjct: 126 VKARVLDVTGGLTCSVGAAPVKFLAKIASDVNK-----PNGLFILYP-EDVAEFLRTLPV 179 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 + G+G+R L+ +G++ D+ F + F G ++E ++ Sbjct: 180 GRIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYS 239 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 K E +F E D +R+ + + A R LR + R I+ +K + F Sbjct: 240 EPKSE-SAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADF---- 294 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQGVAQLN 359 S S L PT + I + A R LDA+ A + + GV + +F G QL Sbjct: 295 --RSISRSHSLPEPTASTETIFDEACRLLDALTLA-DKVRLIGVGVSNFGPAHHGPRQLT 351 Query: 360 L 360 L Sbjct: 352 L 352 >UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class) RepID=A5CQW8_CLAM3 Length = 430 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 119/421 (28%), Positives = 190/421 (45%), Gaps = 28/421 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+A+ E + RP+L G PV+V S+ G V + EA+ GV+ P + L Sbjct: 26 IDMDAFFAAVELLERPELRGTPVIVGGSSGRGVVTSATYEARRFGVRSAMPMAQALRLCP 85 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFGRE 122 + V+ + E YA S VM +++P VE SIDEAF D+ G R + G Sbjct: 86 QATVI--GGHMEKYAHWSRVVMGIFRDVTPLVEPLSIDEAFLDVAGARGLFGSPAEIGAM 143 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IR V T LT VG A TK +AKLA+ K G++ + E + ALPV Sbjct: 144 IRRRVHAETGLTCSVGAASTKFVAKLASTRCKP-----DGLLVIPAAE-TLPFLHALPVG 197 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 +WG+G+ + L G++TV D+ADT + ++ + +L + Sbjct: 198 ALWGVGKTTEEALLRRGLRTVADIADTPLPALQSMLGESAGARLHDLSWGRDPRRVSTHR 257 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 ++ + +F + +TD +R+ + A R AE+LR R +S ++ S F Sbjct: 258 EEKSMGHENTFHDDVTDPEIVRRELLGQATRVAERLRRAGLTARTVSLKLRYSDFRT--- 314 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGV---MLGDFFSQGVAQLN 359 + S L PT +R I + + + + G R + GV L D ++ VA Sbjct: 315 ---ITRSRTLSEPTDVARRIYDEIRDVYEQVARPGDRIRLVGVRAEQLDDADNRAVA--- 368 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLS-PRYTTRSSDL 418 L+D + G + +D + GRG + A + ++ KRA +S PR S Sbjct: 369 LWDADE---GWREAERTVDQAAQRFGRGAIGPA--SLLRKPGAKRATVSDPRTEAASRGT 423 Query: 419 L 419 L Sbjct: 424 L 424 >UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9LBG3_RUMHA Length = 426 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 177/399 (44%), Gaps = 28/399 (7%) Query: 6 DVNAFYASCETVFR------PDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWF 56 DVN+ + S E V+R DL P V + G ++A++ AKA GVK G+P Sbjct: 12 DVNSAFLSWEAVYRLEQGGTVDLREIPCAVGGDKTKRRGIILAKSLSAKACGVKTGEPL- 70 Query: 57 KQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CR 114 + ++C ++ S+++ +Y S + ++ L E SP VE YSIDEAF D+TG+ Sbjct: 71 --TEALKKCPSLIVVSAHHSMYRQYSQKFLNILREYSPSVEQYSIDEAFMDMTGMEKLIG 128 Query: 115 DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 + F +++ + + TV +GI+ K LAK+A+ K + T L E + K Sbjct: 129 NPVAFAHKLKNRISKELGFTVNIGISGNKYLAKMASDFEKPDKVHT-----LFPTEIKTK 183 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 M LPV D+ +GR ++ L +GI T+ DLA+TD+ ++ H E G Sbjct: 184 -MWPLPVSDLLFVGRATTQVLKKLGIYTIGDLANTDVEILKCHLKKQGESIWNFANGRDT 242 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 +E + + S + +TD + + + S A +LR + +S ++ Sbjct: 243 SLVESESQGNKGYGNSTTIAFDVTDEGTAKMVLLSLCETVAARLRKDDVKAEVVSVSVR- 301 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 F + S + PT + +I + D +W G + GV + Sbjct: 302 -DFEMKTV----SHQRVMAAPTNITGEIYDTVCVLFDELWD-GMPIRHLGVHTSRVSKEE 355 Query: 355 VA-QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q++LFD N E++ +D + K G + A Sbjct: 356 RGRQMSLFDLNTNYEKMEKMDMAVDKIRKKFGNNAIMRA 394 >UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutylicum RepID=DPO4_CLOAB Length = 396 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 165/363 (45%), Gaps = 32/363 (8%) Query: 35 GCVIARNAEAKALGVKMGDPWFKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSP 93 G V+A++ AK G+ G+ + + ++C ++ F ++ Y S +M+ L+ +P Sbjct: 47 GVVLAKSTPAKKYGIVTGESLYHAR---KKCPNILVFPPRFDTYRKASESMMNLLKRFTP 103 Query: 94 RVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAA 153 +E YSIDE F D+T + +F I+ + TV VGI+ + LAK+A+ Sbjct: 104 HIEKYSIDECFMDVTNDLRGMESVEFASIIKERIKNELGFTVNVGISTNRLLAKMASELN 163 Query: 154 KKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRF 213 K + T L E + K M LPV +++ +G+ + +KL+ + IKT+ +LA D+ Sbjct: 164 KPDKINT-----LYKHEIKDK-MWPLPVGELFMVGKSMKRKLNELHIKTIGELAKYDVNI 217 Query: 214 I----RKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIIC---SRSFGERITDYPSMRQA 266 + + H N+V E + + + + EI C + +TD + + Sbjct: 218 LKAKFKSHGNMVWEYA-------NGIDNSDISRYRDEIKCISNETTLSMDLTDTEKIHKI 270 Query: 267 ICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAA 326 + + ++LR ++YC IS I+TS F S KL +RDII A Sbjct: 271 LVTLCENLGQRLRDANKYCTSISVNIRTSDFR------NYSHQKKLKNAVSSTRDIILYA 324 Query: 327 TRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR 386 + + +W + GV L S Q+++FD+ +E L +D++ K G Sbjct: 325 DKIFNEMW-GREPIRLLGVQLSGLCSGSSVQISMFDEKTD-TRNEILDKTLDSIRKKYGD 382 Query: 387 GTL 389 + Sbjct: 383 NVI 385 >UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCT4_9FIRM Length = 397 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 144/303 (47%), Gaps = 21/303 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+AS E + P+ +PV+V LS G V + EA+ GV P K+ Sbjct: 15 VDMDAFFASVEQLDHPEYRNRPVIVGGLSGR-GVVSTASYEARRFGVHSAMPM---KEAL 70 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFG 120 RC F Y Y ++S ++ E SP VE SIDEAF DLTG+ R D+ G Sbjct: 71 ERCPKGIFVEGRYGRYLELSQKIRQIFHEFSPLVEPLSIDEAFLDLTGMERLVGDIPALG 130 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I+ + + T LT VG+A K LAKLA+ K G+V + E ++ + LP Sbjct: 131 LRIKERIKKETGLTASVGLAPNKFLAKLASDLKK-----PNGLVIIRQSEAASRI-APLP 184 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG---EPCLQL 237 + ++GIG R + L GI+T+ DLA D F+ F E +R G P + Sbjct: 185 ISRIFGIGARSASLLTRFGIRTIGDLAACDASFLSPLFGKNTETILRFAHGLDNRPVIPD 244 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E+ +Q + +F + + D+ + + + + + +LRS ++ +KT F Sbjct: 245 EK----RQSLGRELTFEKDLRDHAVILEILWNLSQEVGFRLRSAGLSGYTVTLKMKTQDF 300 Query: 298 ALN 300 ++ Sbjct: 301 KVH 303 >UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4_THETN Length = 384 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 169/363 (46%), Gaps = 27/363 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+AS E P+ GKPV+V LS G V + EA+ G+ P + K L Sbjct: 8 VDMDAFFASIEQQDNPEYRGKPVIVGGLSGR-GVVSTCSYEARKYGIHSAMPMYMAKKLC 66 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 + + + Y ++S ++ L +++P VE SIDEA+ D+T V ++ D E Sbjct: 67 PQG--IFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVD--KNPEDIALE 122 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+ V T LTV VGI+ K LAKLA+ W + G +V ++ + ++ LPV Sbjct: 123 IKKRVKDATGLTVSVGISYNKFLAKLASD----WNKPDGLMVITEDMVPE--ILKPLPVT 176 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPCLQLEE 239 V GIG + ++KL ++GI+TV DL + + F V + +R + P + E Sbjct: 177 KVHGIGEKSAEKLRSIGIETVEDLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMRE 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +E ++ + + + Q + ++ +E+L E YCR ++ IKT+ FA+ Sbjct: 237 IKSIGKE----KTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTADFAV 292 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + ++ S DI A L+ W+ + G+ + + QL+ Sbjct: 293 HTKSKTVDKYIRF------SEDIYEVAKGILEE-WKLEQYVRLIGLSVSNLSPVKYEQLS 345 Query: 360 LFD 362 D Sbjct: 346 FLD 348 >UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus RepID=C5D272_GEOSW Length = 414 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 174/379 (45%), Gaps = 54/379 (14%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKA-LGVKMGDPWFKQKDL 61 D N+F+ASCE P L GK VVV + G V+A N AK G+ P ++ K Sbjct: 16 DCNSFFASCEIARDPSLKGKAVVVAGDPKERKGVVLAANYIAKQRFGIYTTMPLWEAK-- 73 Query: 62 FRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +RC +V ++ LY ++S +V L +P +E SIDE + D+T + D Sbjct: 74 -KRCPQLVVLKPDFHLYREISEKVFQFLATFTPVLERASIDEGYLDITDCYSLGSPLDIA 132 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR---KLMS 177 +I+ +LQ H+ V +GIA K LAK+A++ K G+ L R+R K++ Sbjct: 133 EQIQKELLQTLHIPVSIGIAPNKFLAKMASNMKKPL-----GITVL----RKRDVPKVLW 183 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV ++ GIG + +KKL+++GI T+ +LA + + T++ L G ++L Sbjct: 184 PLPVQEMHGIGDKTAKKLNSIGIFTIGELAKAE------------KVTLQNLLGITGVRL 231 Query: 238 EEFA------PTKQE-------IICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQY 284 +E+A P E I S + +T+ + + + A + +++ + Sbjct: 232 KEWANGIDPRPVDPESGEKWKSIGSSTTLPRNVTEERILLEVLRDLAQSVSNRMKQKGVV 291 Query: 285 CRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAG 344 + I+ S F + S P Q++ +I A L W G+ + G Sbjct: 292 SSTVQIMIRYSNFQ------TITRSKTWENPFQEAEEIFQRAVYLLKRHWN-GNPVRLLG 344 Query: 345 VMLGDFF--SQGVAQLNLF 361 + D F + V QL+LF Sbjct: 345 ITAVDVFDKKEAVKQLDLF 363 >UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiales RepID=A9KLV9_CLOPH Length = 432 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 165/390 (42%), Gaps = 59/390 (15%) Query: 1 MFALCDVNAFYASCETVFRPDLWGK-------PVVV---LSNNDGCVIARNAEAKALGVK 50 +F DVN+ + S E +R + G+ P V+ N G V+A++ AK L + Sbjct: 18 IFFHIDVNSAFLSWEAAYRLHVLGESVDLREIPSVIGGDKENRHGIVLAKSTSAKKLKIH 77 Query: 51 MGDPWFKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG 109 G+ ++C +V NY+ Y S +M L SP+VE YSIDEAF D++G Sbjct: 78 TGEAL---GAAVQKCPNLVIIPPNYQRYVKASKSLMEILHRFSPKVEQYSIDEAFVDMSG 134 Query: 110 -----------VRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQR 158 N +DL + + TV +G++ K LAK+A K Sbjct: 135 SELLYGGPVIVANNLKDLIE----------EELKFTVNIGVSSNKLLAKMAGELKKP--- 181 Query: 159 QTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF 218 +V E K M LPV +++ +GR KKL +GIKT+ +LA TD++ ++ HF Sbjct: 182 ---NLVHTMFPEEIPKKMWPLPVGELFFVGRATEKKLFNLGIKTIGELAQTDVKILKAHF 238 Query: 219 NVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERIT---DYPSMRQA---ICSYAA 272 E + G ++E +P + ++ +G +T D +M A + S + Sbjct: 239 GKYGEVLYQFSHG-----IDE-SPLFVPLEANKGYGNSVTTPYDIVTMEHANLVLLSLSE 292 Query: 273 RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA 332 +LR + + +S + T F S L + + + ++ A R Sbjct: 293 TVCTRLRMDGVKGQCVSVSVTTDTFQR------ASHQGMLFSASNTTMEVYRFACRLFKN 346 Query: 333 IWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 +W ++ GV + Q NLFD Sbjct: 347 LWDGRTPIRQMGVHTSRITKESTMQYNLFD 376 >UniRef50_Q6KZW2 DNA polymerase IV n=1 Tax=Picrophilus torridus RepID=DPO4_PICTO Length = 344 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 M L D + F+A E + P L GKPVVV + G V N EA+ALG+K G P Sbjct: 1 MIMLIDFDYFFAQVEEINDPSLKGKPVVVSVYSGRNERSGAVATSNYEARALGIKSGMPL 60 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 ++ ++ + V + Y S+++M + E S ++EI SIDEA+ D+ G +C+ Sbjct: 61 YRALEIGKNRAV-FLPIRKDFYQKYSDKIMDIISEYSEKMEIASIDEAYIDIDG-NDCK- 117 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 EI+ +L T + V +GI K +AK+A AK G+ +S + + Sbjct: 118 -IGIANEIKNRILNETGIKVSIGIGINKVIAKMAAEMAK-----PNGIKCIS-ADETGEF 170 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIR 215 ++ + ++D+ GIG+ +SK L+ +GI+ + D+ + D+ I+ Sbjct: 171 LNNIKINDIPGIGKVLSKNLNEIGIEYLRDIKNFDVNKIK 210 >UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica RepID=DPO4_RHOBA Length = 396 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 114/415 (27%), Positives = 175/415 (42%), Gaps = 44/415 (10%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AFYAS E RP+L G+PVVV S G V A + EA+ G+ P + Sbjct: 1 MILHVDMDAFYASVEQRDRPELRGRPVVVGGSEGRGVVTAASYEAREYGIHSAMPGSRAI 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 L V + YA + V +P V+ S+DEAF D++G +R + Sbjct: 61 KLCPHADFV--RGRLDHYASVGRAVREIFHRFTPVVQPLSLDEAFLDVSGTIRLHGSPRE 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G IR T+ + L VGIA K +AK+A+ K G V++ + R+ + Sbjct: 119 IGINIRETIRRELDLPASVGIAPLKFVAKIASDIGKP-----NGFVEVPA-DGVREFLDP 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV +WG+G+ KL +G +T+ DL D+ ++ GE L Sbjct: 173 LPVSRLWGVGKVGQTKLQRLGYRTIADLRVKDLDALKSQLG---------RWGEHLWNLA 223 Query: 239 EFAPTKQEII--------CSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 +Q ++ R+F E ++D S+ A+ SY SE R Sbjct: 224 NGIDRRQVVVDHLAKGIGHERTFAEDLSDIESL-NAVVSYL--------SEQTARRLRRA 274 Query: 291 FIKTSPFALN---EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQK-AGVM 346 S L E + S + KL TPT + +I+ A L + R + G+ Sbjct: 275 RRLASTITLKYRREDFQTFSRARKLSTPTDSTLEILQVAEELLLEMRSREPRSVRLLGIS 334 Query: 347 LGDFF-SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQW 400 LG + QL+LF + S ++ T+ D + K G+ +LY A QW Sbjct: 335 LGGLTDADAPKQLHLFGEETGENASSKVDTLSDQIATKLGKHSLYRAS---SHQW 386 >UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteobacteria RepID=A0LG84_SYNFM Length = 425 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 106/396 (26%), Positives = 176/396 (44%), Gaps = 39/396 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E RP+ GKPV+V G V A + EA+ GV P F+ K L Sbjct: 40 VDMDAFYASVEQADRPEFKGKPVIVGGARRGVVSAASYEARRFGVHSAMPVFQAKRL--- 96 Query: 65 C-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-FGRE 122 C G + Y ++S VM L +SP VE SIDEAF D+TG + GR Sbjct: 97 CPGGIFLPVRMGRYKEVSKVVMDILCGISPLVEQISIDEAFVDITGTEALHGSPESLGRR 156 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +++ + T +T VGIA K +AK+A+ K G+ + + +R ++ LPV+ Sbjct: 157 VKSQIRAATRVTCSVGIAPGKFVAKIASDIHK-----PDGLTIVED-DRVEAFLAPLPVE 210 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPCLQLEE 239 + GIG++ S+ L ++G++ + D+ F K V L R + P + + Sbjct: 211 RIPGIGKKTSEALRSLGVRAIGDVLRFPASFWVKRLGAWGVKLHERARGVDPAPVIAYSQ 270 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 E +F E + D ++ + + + ++LR E R ++ +K + F+ Sbjct: 271 AKSCSAE----DTFPEDVDDVETLEKWLFVQSEEVGKELRRESFRGRTVTLKVKFADFS- 325 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L T ++ I A+R L A+ + + + GV GV+ L+ Sbjct: 326 -----SITRSHTLREATDCTQLIFGTASRLLRAL-KLNRKVRLVGV--------GVSNLS 371 Query: 360 LFDDNAPRPGSEQLM------TVMDTLNAKEGRGTL 389 + P L+ MD ++ + G G L Sbjct: 372 AMPEQKPVFSDSMLVRQRKLDRAMDRIHERFGHGAL 407 >UniRef50_C1F7T1 ImpB/MucB/SamB family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7T1_ACIC5 Length = 441 Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 113/411 (27%), Positives = 187/411 (45%), Gaps = 49/411 (11%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D+N+++AS E RP+L +P+ V+ C IA + EAKA GV+ G + + R Sbjct: 28 DLNSYFASVEQQLRPELRNRPIAVVPVKAETTCAIAASYEAKAYGVRTGT---QVAEARR 84 Query: 64 RC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFGR 121 C G+V + +E Y D R++ +E+ P + SIDE C L G + R D R Sbjct: 85 LCPGIVFVEARHEAYVDYHKRIVEAVEQCVPVAAVCSIDEMACRLLGREQPLRHALDLAR 144 Query: 122 EIRATVLQRTHLTV--GVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 E++ ++ +R T+ VG+A + L+K+A+ K G+V L+ L + Sbjct: 145 EVKGSIRRRVGETLRCSVGLAPNRYLSKVASDMDKP-----DGLVALTPDILDTALRRLV 199 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVL-ERTVRELRGEPCLQLE 238 P D+ G+G R+ K+L GI T+ +L D +R+ + V E+ LRG E Sbjct: 200 P-RDLPGVGARMEKRLHEAGIHTMDELLALDRDGMRRAWGSVNGEKLWHWLRG------E 252 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAA------RAAEKLRSEHQYCRFISTFI 292 +F E+ ++S + P +R +YA +AA +LR+ + +S + Sbjct: 253 DF--HDAELEHNKSISQSHVLPPELRSVEGAYAVAHKLLHKAAMRLRTARLWTTHVSLTL 310 Query: 293 KTSPFALNE-----------PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQ 341 K FA+ + P G + ++ QD++ ++ A R L + G +Q Sbjct: 311 K---FAVPKSEAHRKHYSGIPQLGWAQGTTVIE-CQDNQTLVE-ALRKLWELRPTGPAHQ 365 Query: 342 K---AGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 K GV LG+ + L+LF L T +D +N K G TL Sbjct: 366 KPFFVGVWLGNLVPDHLHTLSLFSSLETEARRTSLTTTIDRVNLKYGLDTL 416 >UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42_RHILO Length = 415 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 20/210 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E + P L GKP+ V G V+A + EA+A GV+ G P K ++L Sbjct: 10 ADLDAFYASVEQLLDPSLRGKPIAV---GGGVVLAASYEARAFGVRGGMPGRKAREL--- 63 Query: 65 CGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL----TDF 119 C + F N+ Y + + + L++ +P VE SIDEAF D+ G C L D Sbjct: 64 CPQLIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAG---CTHLFGQPRDI 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IR V L + +G+A+TK LAK+A+ AK G+V + + + + L Sbjct: 121 ATAIRHRVRAELGLPISIGVARTKHLAKIASQVAKP-----DGLV-VVDPGTELDFLHDL 174 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADT 209 PV +WG+G +L +GI+T+ +LA T Sbjct: 175 PVSLMWGVGPATKSRLAEIGIQTIGELART 204 >UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO42_BACSU Length = 412 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 112/415 (26%), Positives = 183/415 (44%), Gaps = 40/415 (9%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQKD 60 L D+ +FYAS E P L +PV+V + + G V+A AK GV ++ ++ Sbjct: 9 LVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWEAQE 68 Query: 61 LFRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TD 118 +C V + Y D+S ++ + LEE + VE YSIDE F D+TG + + Sbjct: 69 ---KCPEAVVLRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPME 125 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLA-NHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + I+ +++ + VGI K LAK+A ++ AKK G+ L+ E + M Sbjct: 126 IAKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKK---NKNGIFTLTK-ENMKTEMW 181 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV---VLERTVRELRGEPC 234 LPV ++G+G R+ L+ MGI T+ LA + ++K + + VL T + P Sbjct: 182 PLPVGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANGIDYSPV 241 Query: 235 LQLEEFAPTKQEIICSRSFGERIT---DYPSMRQAICSYAARAAEKL--RSEHQYCRFIS 289 + + ++ G +T DY + I +E++ RS + + Sbjct: 242 --------STSSLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNAGVMGQT 293 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 + + P G + VKL PT ++D+ A R W G ++ GV L Sbjct: 294 VSVSCRGADFDWP-TGFNRQVKLAEPTNSTQDVYEAVRRLFLTFWD-GKPVRRLGVNLSQ 351 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG------RGTLYFAGQGIQQ 398 S + QLNLF D A + L VMD + + G +L AGQ ++ Sbjct: 352 LSSDDIWQLNLFQDYAKK---MSLGYVMDGIKNRFGDTAIIRAASLTAAGQAFER 403 >UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8GPZ5_THISH Length = 414 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 112/409 (27%), Positives = 178/409 (43%), Gaps = 46/409 (11%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDG-CVIARNAEAKALGVKMGDPWFKQKD 60 L D+NAF+AS E + P+L G+PV + + G C+I + EA+A GV+ G + K+ Sbjct: 9 IVLVDMNAFFASIEQLDHPELRGRPVGITNGQTGTCIITSSYEARAHGVRTG---MRLKE 65 Query: 61 LFRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD- 118 + C ++ + E YA +S +M+ LE ++P +E++S+DEAF D+T +C+ L Sbjct: 66 ARQLCPDILQIPARPERYARVSTDIMTALESVTPDLEVFSVDEAFLDVT---HCQRLLGP 122 Query: 119 ---FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 R ++ TV + + L VG++ KT AK A Q + G+ + E +L Sbjct: 123 PEVIARRVKDTVREASGLPCSVGMSGDKTTAKWAAK-----QHKPDGLTVIPPWEAAARL 177 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + +PV ++ GI I L+ G+ T D+A + + + F + R +G Sbjct: 178 -APVPVTELCGIAGGIGGYLEQRGVYTCGDMAQLPVSELARRFGNLGRRIWLMAQG---- 232 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQ--AICSYAARAAEKL-----RSEHQYCRFI 288 + P + I RS G P R+ I +Y A K+ R + RF Sbjct: 233 --RDPTPVETRIAPPRSLGHGKVMPPGTRERAVILTYLEHMAFKVGTRLRRHDLLALRF- 289 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 FI L Y + + T DSR + R L+ W Q L Sbjct: 290 --FI-----GLRADYGWIGGTYRTAVATDDSRQLNALCRRMLNEHWSGEGVSQVQITALE 342 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMT-----VMDTLNAKEGRGTLYFA 392 + G QL LFD ++Q VMD +N + G TL A Sbjct: 343 PCPAAG--QLELFDAGQAPGAADQARVRAAHGVMDAINRRYGEFTLAPA 389 >UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_9GAMM Length = 390 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 26/288 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+A+ E RP+L G PV+V N G V + EA+ G++ + + L Sbjct: 34 VDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAARARSL- 92 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDFG 120 C F + Y ++S +VM+ L + VE S+DEAF D+T L + Sbjct: 93 --CPQAIFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTDGTLAVEIA 150 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REI + + T LT G++ K LAKLA+ W++ G V ER ++ LP Sbjct: 151 REILDRIHRETGLTASAGVSYNKLLAKLAS----DWRKPHGLFVIPP--ERGLAFLAPLP 204 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV------LERTVRELRGEPC 234 V + G+G KKL AMG++TVLDL + + F+ HF + R + E +P Sbjct: 205 VGKLHGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQPS 264 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEH 282 Q ++ + R+F + + D M + AA+ A +L+ H Sbjct: 265 RQ-------RKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLH 305 >UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteria RepID=A6NU31_9BACE Length = 414 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 115/408 (28%), Positives = 182/408 (44%), Gaps = 41/408 (10%) Query: 5 CDVNAFYASCETVFRPDL--WGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQK 59 CD+N+FYAS E + P+L GKPV V + + G ++A+N AKA+GVK + ++ + Sbjct: 8 CDLNSFYASVELLSLPELRESGKPVAVCGDPESRHGIILAKNEPAKAMGVKTAETIWQAR 67 Query: 60 DLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDL 116 ++C +V ++ + Y S V + + + VE +SIDE++ D+TG + D Sbjct: 68 ---QKCPDLVLLPAHRDQYRKYSRIVNAIYDRFTDLVEPFSIDESWLDITGSMHLWGGDG 124 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 IR TV T LTV VG++ K AK+ + K V+ N R+L+ Sbjct: 125 KAIADRIRETVKAETGLTVSVGVSFNKVFAKMGSDYKKP---DATTVITRENF---RQLL 178 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG----- 231 LPV D+ +G +K L G++T+ DLA RF + +L + L Sbjct: 179 WPLPVTDLLFVGGAAAKVLRGYGVQTIGDLA----RFDPQALVTILGKQGAALHSYAAGT 234 Query: 232 --EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 EP + + P K + +F + +R + + + A +LR C + Sbjct: 235 EHEPVIPARDLPPPKS-VGSGLTFRRNLLGLEDVRAGLSALSDEVAARLRRHGLKCTTVQ 293 Query: 290 TFIKTSPFALNEPYYGNSASVK-LLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 I+ +P + + K L PT SRDI +AA L A W + V Sbjct: 294 VTIR-------DPNFRDICRQKRLPAPTYVSRDIADAALELLLASWNLKLPIRALTVTGQ 346 Query: 349 DFFSQGVA--QLNLFDDNAP--RPGSEQLMTVMDTLNAKEGRGTLYFA 392 + + A QL+LF NA R E+L MD + K G + FA Sbjct: 347 NLVDEADAGEQLDLFAANAAPHRDKLERLERTMDKIRDKYGGTAITFA 394 >UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=DPO4_DESAA Length = 396 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 105/397 (26%), Positives = 180/397 (45%), Gaps = 36/397 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AFYAS E + P+L G+ V+V ++N G V + + EA+ALGV+ P + L Sbjct: 9 VDMDAFYASVELLDNPELRGQCVIVGGASNRGVVCSASYEARALGVRSAMPIVTARKLCP 68 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREI 123 R V Y ++S +V + +P VE S+DEAF D+T + L G EI Sbjct: 69 RG--VFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVT---SSTRLFGSGEEI 123 Query: 124 RATVLQRTHLTVGV----GIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 A + ++ ++G+ GIA+ K +AK+A+ K G++ + ++ ++ + L Sbjct: 124 AANIRRQIESSLGITASAGIAKNKLVAKIASDLCKP-----NGLL-VVPADQTQEFLDPL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ +WG+G KL ++G+KT+ D+ + +F E RG +E Sbjct: 178 PISRLWGVGPASRNKLISLGVKTIRDVRKLTQEMLSANFGRNGEVIYAFARGMDDRPVEP 237 Query: 240 FAPTKQEIICSRSFGERIT---DYPSMRQA---ICSYAARAAEKLRSEHQYCRFISTFIK 293 ++S G IT + ++ +A + + R A ++R E R ++ +K Sbjct: 238 PG-------AAKSIGREITFDRNVYTLEEAYKWMLFLSERVARRMRKEEATGRTVNIKVK 290 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 + F + SV L +PT D +I A + L + GV L + Sbjct: 291 YADF------IQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQLVTP 344 Query: 354 GVA-QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 G A Q LFDD +L +D + + G GT+ Sbjct: 345 GQAWQPGLFDDPTASERKRKLNQALDGIWDRFGSGTV 381 >UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C6BW91_DESAD Length = 389 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 110/393 (27%), Positives = 177/393 (45%), Gaps = 28/393 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI-ARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+AS E + P+L GKPV V S ++ V+ A + EA+ GV+ P + L Sbjct: 8 IDMDAFFASVEQLDNPELRGKPVGVGSMHERSVLSAASYEARKFGVRSAMPVRQALKLCP 67 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT-DFGRE 122 + VV S + Y ++S +VM+ L SP VE SIDEA+ D+TG R Sbjct: 68 QLQVV--SGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFGTPLQIARS 125 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+A + + T LT VGIA K LAK+A+ K + + E+ + + LPV+ Sbjct: 126 IKADIRKATGLTASVGIAPVKFLAKIASDLNKPDG------ISIITAEQVQDFLKTLPVE 179 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPCLQLEE 239 + G+G++ +L + GI DL F ++ F +VL + P + Sbjct: 180 KIPGVGKKALPRLRSYGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTEGGA 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + E +FGE ++D +++ + + R A +R R ++ +K F Sbjct: 240 MKSSSAE----NTFGEDVSDIHTLKTLLLKQSERIAADIRKHGVKGRTVTLKVKFPDF-- 293 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L + T + I A LDA G + GV + +F + QL+ Sbjct: 294 ----RQITRSRTLDSRTSHAGTIYKTACSLLDAELPIGP-IRLIGVGISNFEERN-RQLS 347 Query: 360 LFDD-NAPRPGS--EQLMTVMDTLNAKEGRGTL 389 L DD P+ EQL +D + K G+ L Sbjct: 348 LLDDPEKPKESKRLEQLDKAVDQVRLKFGKDIL 380 >UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQX0_9ACTO Length = 445 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 150/343 (43%), Gaps = 33/343 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+ S E + RP+L GKPV V G V A + EA+ GV P + R Sbjct: 26 VDMDAFFVSVELLDRPELAGKPVAVGGAERGVVSAASYEAREFGVNSAMPVARA---LRA 82 Query: 65 C-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-----CRDLTD 118 C + Y+++S ++M L +++P VE S+DEAF D+ G R R TD Sbjct: 83 CPHLTMIPPRPGRYSEVSRQIMDILHDVTPLVEKLSVDEAFLDVGGARRLMGGPVRIATD 142 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +RA + + + VGIA TK +AK+A+ AK G++ L + Sbjct: 143 ----LRARIRREVGVPASVGIAATKHVAKIASAHAK-----PDGLL-LIPRSATIAFLHG 192 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTD----IRFIRKHFNVVLERTVRELRGEPC 234 LPV +WG+G + +L GI+TV +LAD R + + L R P Sbjct: 193 LPVGALWGVGEKTRARLANQGIETVGELADAGPERLARILGRAHGTHLYRLAMGQDPRPV 252 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 E ++ I +F E + D + + + + A A +LR H R ++ ++ Sbjct: 253 QTSRE----EKSIGKEETFFEHVADRGKLERILLAQAHATARRLRRAHLTARTVAIKVRF 308 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG 337 + F + S PT + D+ A D++ +G Sbjct: 309 ADFTT------ITRSTTFARPTDLAADLYAGAKHLFDSVAVSG 345 >UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_PELTS Length = 402 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 101/379 (26%), Positives = 161/379 (42%), Gaps = 47/379 (12%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVV---LSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 L D+N+FYAS P L GKPV+V + G V+A + EAKA GVK G Sbjct: 7 LADMNSFYASVHQAMEPRLKGKPVIVGGDPARRHGIVLAASVEAKACGVKTGM------- 59 Query: 61 LFRRCGVVC-----FSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 R +C + Y + S R++ +++ SP VE +SIDEAF D++G C Sbjct: 60 TVREAAALCPQGIFLKPRHSHYINFSARIIRIMKDFSPLVEPFSIDEAFMDVSG---CGL 116 Query: 116 LTDFGREIRATVLQRTHLTVG----VGIAQTKTLAKLANHAAKKWQRQTG-GVVDLSNLE 170 L EI + R VG VG+ K LAK+ A Q+ G ++D ++ Sbjct: 117 LFGSSLEIAVKLKARIKNEVGVLCSVGVGPNKLLAKM----AAGMQKPDGLTLLDFPDVP 172 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 + + LPV +++G+G R+ K+L + I T+ DLA ++ +++ F +V Sbjct: 173 VK---IWPLPVRELFGVGSRLEKRLRDLNIHTIGDLARYPLQVLKQKFGLVGHILHLSAS 229 Query: 231 G------EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQY 284 G +PC LE +I R + Y ++ I ++R Sbjct: 230 GIDYSPVDPC-SLERVRSIGHQITLPRDY----WGYNEIKVVILELCEIVCRRVRLGGYA 284 Query: 285 CRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAG 344 R +S +K + F S + + PT + ++ A + L W + G Sbjct: 285 GRTVSLTLKDTDFLW------LSRARTMNYPTASADEVYRVAVQLLHQHWPPWKPVRMVG 338 Query: 345 VMLGDFFSQGVAQLNLFDD 363 V L QL+LF + Sbjct: 339 VSLAGLVKNRAEQLDLFGE 357 >UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales RepID=Q2IM85_ANADE Length = 418 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 145/335 (43%), Gaps = 32/335 (9%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E + P+L G+PV+V + N G V A + EA+ GV+ P + + L Sbjct: 17 DLDAFYASVEQLDHPELRGRPVIVGGTGNRGVVCAASYEARRFGVRSALPTARARRL--- 73 Query: 65 CGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFGRE 122 C F + Y+++S RV +P VE S+DEAF D+T R D R Sbjct: 74 CPDGVFLPPRFGRYSELSRRVFDVYRRYTPLVEPLSLDEAFLDVTASRALHGGGPDIARA 133 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK---WQRQTGGVVDLSNLERQRKLMSAL 179 I+A V L V G+A K AK+A K GGV ++ L Sbjct: 134 IKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDGLVVVPPGGVA---------AFLAPL 184 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERT-VRELRGEPCLQ-L 237 PV +WG+G L +G+ T+ DLA R L T R LR C + Sbjct: 185 PVGRLWGVGEVTEAALRRIGVATIGDLA----RMPESALAAALGPTHARGLRALACGEDP 240 Query: 238 EEFAPTKQ--EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E P ++ + +F + + P++ + + + A A +LR+ ++ +K + Sbjct: 241 REVVPDEEAKSVGAEDTFDQDLLGRPALERELLAQAGTVARRLRAAGLAGHVVTLKVKYA 300 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSL 330 F L + V L T D R I +AA L Sbjct: 301 DFTL------VTRRVTLERATDDDRAIFDAACAQL 329 >UniRef50_UPI0001913C3A DNA polymerase V subunit UmuC n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001913C3A Length = 110 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 56/106 (52%), Positives = 72/106 (67%), Gaps = 3/106 (2%) Query: 104 FCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGV 163 F D+ + +C D DFGR++R V T LT+GVG+ TKTLAK A A+K+W RQ GV Sbjct: 2 FLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQWASKEW-RQFEGV 60 Query: 164 VDLS--NLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLA 207 + L+ N +R KL+S PVD++WG+GRRISKKL MGI T L LA Sbjct: 61 LALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMGITTALQLA 106 >UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM9_ERYRH Length = 392 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 144/299 (48%), Gaps = 19/299 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQKDLFR 63 D+NAFYAS + L+GKPVVV SN G V+ + EA++ GV P K L Sbjct: 8 IDINAFYASAHLITDSSLYGKPVVVCSNQRGSVVTTASYEARSFGVNSAMPLAHAKRLCP 67 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGRE 122 V+ +++LY ++S + M+ + S ++ SIDE + D+T V + D E Sbjct: 68 NLEVI--EVDFDLYQELSVKFMNIIRSYSAVMQPASIDECYVDMTEVIKKYEKPLDLAVE 125 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+ + + L + +G+A K LAK+A+ K G+ L E +KL L ++ Sbjct: 126 IQKNIWEALRLPISIGVAPNKFLAKMASDMQKPR-----GITVLRIREVSQKLW-PLSIE 179 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVL----ERTVRELRGEPCLQLE 238 ++GIG++ KL +GI+T+ DLA RF H +L + V++ G ++ Sbjct: 180 SMYGIGQKTVPKLKQIGIETIGDLA----RFNPDHLKSILGVNAQNFVQKANGYDHSVID 235 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 T + I S++F + +TD +R AI + ++ + + +S I+ + Sbjct: 236 TDV-TMKSIGQSKTFKDAMTDLDEIRNAILNELVEVKRRMERQDVVGKTVSFSIRLDDY 293 >UniRef50_B3PM57 Pol_IV_kappa DNA polymerase n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PM57_MYCA5 Length = 416 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 91/339 (26%), Positives = 164/339 (48%), Gaps = 29/339 (8%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+ +CE P L +PV + + + + E K LG++ GDP K K L Sbjct: 12 DMDAFFINCERAIDPRLDNQPVAIGKVHKRSIATSVSYELKKLGLRPGDPSLKVKHL--- 68 Query: 65 CGVVCF-SSNYELYADMSNRVMSTLE-ELSPRVEIYSIDEAFCDLTGVRNCRDLTD--FG 120 C V F +Y+LY+ S R+ LE + +EIYSIDE + ++T + N R ++ Sbjct: 69 CPNVIFVEPHYQLYSSYSKRIFDYLETHYTHTIEIYSIDECYLEVTTILNNRKISAQALA 128 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EI+ +L + L +GI+ TK LAK++ + AK + G+++ + ++ L Sbjct: 129 FEIQKNILDKFQLPCSIGISFTKFLAKMSTNKAKPF-----GILETKKQDIEKHFYD-LD 182 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLA-DTDIRFIRKHFNVVLERTVRELRGEPC---LQ 236 + +++G+G+ + KL GI T DL + + +F+R F + EL+G+ +Q Sbjct: 183 IQEIFGVGKASTAKLKEYGINTYRDLVNEKNTQFLRSVFGKRFYSLILELKGDNLHDHVQ 242 Query: 237 LEEFAPTKQEIICSRSFGE-RITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 EE + I S SF E I D+ + + A +E+ + + I+ I+ + Sbjct: 243 NEE----AKGISNSMSFIENNIADFNEISNCLYELAENVSERAKITNVEGSTITVMIRWA 298 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW 334 N+ + +S ++ T + DI N L+++W Sbjct: 299 ----NKNW--SSKQKRIHFYTNEVNDIYNFGKDLLESLW 331 >UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomycetales RepID=C6WDG0_ACTMD Length = 430 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 158/333 (47%), Gaps = 23/333 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AFYAS E RP+L PVVV + G V + N A+ GV+ P + L Sbjct: 33 VDMDAFYASVEIRDRPELARLPVVVGGTAHRGVVASANYLAREFGVRSAMPTAHARRLAP 92 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREI 123 V ++ Y D+S VM +++P VE S+DEAF D+ G R L EI Sbjct: 93 HA--VFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGA--LRRLRATPAEI 148 Query: 124 RATV---LQRTH-LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 A V ++R H +T VG+A TK LAKL++ K G++ + +R + + L Sbjct: 149 AARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKP-----DGLMVVPK-DRALEFLHPL 202 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL-RGEPCLQLE 238 PV +WG+G+R +++LD +G++TV D+A + +RK V L + L RG + Sbjct: 203 PVGALWGVGKRTAEQLDRLGLETVGDVAAAPLLRLRKAVGVALAEHLYALARGHDDRPVV 262 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ I +F D ++ + + R A LR++ R +S ++ + F Sbjct: 263 PYT-REKSIGAEETFEVDHFDRAVLKLELLRLSERTAASLRAKGLRGRTVSIKVRFADFT 321 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 + S L T +R++ AT LD Sbjct: 322 T------ITRSKTLRVATDVAREVYATATSLLD 348 >UniRef50_C1I721 DNA-damage repair protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I721_9CLOT Length = 415 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 101/374 (27%), Positives = 165/374 (44%), Gaps = 40/374 (10%) Query: 6 DVNAFYASCETV-------FRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPW 55 DVN+ Y S V D+ P +V N D G V+A++ AK +K G+P Sbjct: 10 DVNSAYLSWTAVRMLQLGETTEDIREIPSIVGGNTDERHGIVLAKSILAKRYNIKTGEPV 69 Query: 56 FKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR 114 D ++C + F NY L+ D SN + + L E SP+++ YS+DE F D++ + Sbjct: 70 V---DALKKCPNLKIFKPNYRLFMDCSNAMYNLLYEYSPKIQRYSVDEVFIDMSHFK--E 124 Query: 115 DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 + + EI+ + V +GI+ K LAK+A+ K + L E Q K Sbjct: 125 NYMEKAIEIQNRIRSELGFNVNIGISTNKLLAKMASDLEPK-----NAIHTLFKEEIQNK 179 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 M LPVD+++ +GR KLD + I T+ +LA+ DI + F ++ ++ Sbjct: 180 -MWTLPVDNLFMVGRATKSKLDKLNINTIGELANFDIGILESIF-----KSHGKVIHNYA 233 Query: 235 LQLEEFAPTKQEIICSRSFGERIT---DYPSMRQA---ICSYAARAAEKLRSEHQYCRFI 288 +EE + K + + G T D S +A I S +LR+ + CR I Sbjct: 234 NGIEESSVRKYNYVNVKGIGNSTTIAWDVTSKDEALKIILSLTESVCIRLRNNNSLCRVI 293 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 S IK F E Y + T+ +I ++ + W+ G ++ GV + Sbjct: 294 SISIKGFNF---ERYIHQRTLSNYIDCTE---EIYKEMVKAFNEAWR-GETIRQLGVRVS 346 Query: 349 DFFSQGVAQLNLFD 362 + + Q +LFD Sbjct: 347 ELCNNEFFQSSLFD 360 >UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria RepID=B9JZV6_AGRVS Length = 385 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 12/218 (5%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AFYAS E +P+L GKPV V S G V A + EA+A GV P K R Sbjct: 38 VDMDAFYASVEQRDKPELLGKPVAVGGSAARGVVAAASYEARAFGVHSAMPSVTAK---R 94 Query: 64 RCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFGR 121 +C + F +++Y +S+++ E +P +E S+DEA+ D+T ++ T+ Sbjct: 95 KCPDLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIATEIAL 154 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 EIRA + T L GI+ K LAK+A+ K + V+ N + ALPV Sbjct: 155 EIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQ---AVITPKN---GPGFVEALPV 208 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN 219 G+G ++++ GI+T LDL ++F++ HF Sbjct: 209 KRFHGVGPATAERMQRHGIETGLDLKSKSLQFLQTHFG 246 >UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia RepID=B2A4V8_NATTJ Length = 421 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 114/401 (28%), Positives = 181/401 (45%), Gaps = 34/401 (8%) Query: 5 CDVNAFYASCETVFRP------DLWGKPVVVLSNND---GCVIARNAEAKA-LGVKMGDP 54 DVN+ Y S E +R DL P VV ++ G V+A++ AK+ ++ G+ Sbjct: 9 IDVNSAYLSWEAAYRLQKGAQLDLRQVPSVVGGDSQKRRGIVLAKSIPAKSKFKIQTGEL 68 Query: 55 WFKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RN 112 + ++C + NY+LY SN ++ L E SP ++ YS+DE F D T + + Sbjct: 69 LSSAR---KKCPDLFVVPPNYDLYLRCSNAMVELLYEYSPFIQRYSVDEVFLDFTNMEKQ 125 Query: 113 CRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ 172 D I+A V + TV +GI K LAKLA+ K + T L E Sbjct: 126 FGDYLTAANTIKARVKEELGFTVNIGIGPNKLLAKLASEFKKPDRVHT-----LFPEEIP 180 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADT---DIRFIRKHFNVVLERTVREL 229 KL LPV +++ +GR KKL GI T+ +LA T ++ K +++ + Sbjct: 181 TKLW-PLPVGELFMVGRATEKKLLDRGITTIGELAKTPRNKLKLWLKSHGLLIWDFANGI 239 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 E ++ E F P K + S + E + D + R + S + + +LR H Y + ++ Sbjct: 240 E-ESSVRPEGF-PMKG-LGNSTTTPENVADKETARLWLLSLTEKVSSRLRDAHCYAQVVN 296 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 IKTS F YG KLL PT ++ I + L+ +W + G+ L Sbjct: 297 LSIKTSQFI----SYGKQK--KLLNPTNSTKVIFETGKKLLNELWDEEEPLRHIGISLSS 350 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQ-LMTVMDTLNAKEGRGTL 389 S QL++FD + SE+ +D + AK G +L Sbjct: 351 LSSSKSYQLSMFDKLSIDTDSEESFYKAIDKIRAKHGETSL 391 >UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF6_9FIRM Length = 412 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 139/297 (46%), Gaps = 24/297 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNN---DGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+N+FY SCE + +P+L +PV V + G ++A+ AK GV G+P ++ K Sbjct: 6 VDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIWQAK-- 63 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-F 119 ++C ++ F NYE Y +S + +VE Y +DE F D+TG + + Sbjct: 64 -KKCPNLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPEKI 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EI+ + +TV VG++ K AKLA+ K E +K++ L Sbjct: 123 AFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKP------DYCTFIYKENYKKIVWPL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V D+ IG + +KKL+ + IKT+ DLA+ D +RK+ + + G ++++ Sbjct: 177 KVQDMIMIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRVKD 236 Query: 240 FAPTKQEIICSRSFGERIT------DYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 + +II +S G IT +Y +R I +++L + R ++ Sbjct: 237 Y----YQIIPIKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRLIENNYLARGVNV 289 >UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU3_PELCD Length = 399 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 167/387 (43%), Gaps = 21/387 (5%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E + P+L G+PVVV + G V A + EA+ G+ P + R Sbjct: 15 DMDAFYASVEQLDSPELKGQPVVVGGHRSRGVVCACSYEARTFGIHSAMPMSRA---LRL 71 Query: 65 CG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFGRE 122 C + Y ++S +V + VE S+DEAF D+T R + D + Sbjct: 72 CPQAIVQPVRMARYQEISRQVFDIFGRYTDLVEPLSVDEAFLDVTASRRLFGEGWDIAEK 131 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IR V L + GIA K LAKLA+ AK GV + ER + +LP+ Sbjct: 132 IRRDVRDELGLPISAGIAPNKFLAKLASEQAK-----PDGVFQVP--ERVDDFLLSLPLK 184 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 +WG+G + K L MG++TV DL D + + F ER ++ GE +E Sbjct: 185 RLWGVGPVLLKSLQKMGLRTVADLRHMDRADMERCFGQAGERLIQLAHGEDERPVEPQRS 244 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 K I +F + I + +M A+ R A +LR ++ +K + F+ Sbjct: 245 LKS-IGHEDTFDQDIFERETMHVALLDLVERVAARLRKHGLIGTTLTLKVKYADFST--- 300 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 + S + +RD+++ A + L+ + GV L + Q LFD Sbjct: 301 ---VTRSRSVADGICHARDMLHLAKQLLEKTEAGKKPVRLLGVSLANLMDADSGQGLLFD 357 Query: 363 DNAPRPGSEQLMTVMDTLNAKEGRGTL 389 ++ R + L MD + + G L Sbjct: 358 EDR-RNQLKGLEQAMDHVRERYGEKGL 383 >UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DPO4_CLOTH Length = 399 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 172/404 (42%), Gaps = 28/404 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV---LSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 CD+N FYAS E ++ P+L KPV V + + G V+A+N AK VK G+ ++ K+ Sbjct: 8 CDLNNFYASVECLYHPELRDKPVAVCGSIEDRHGIVLAKNYAAKKYKVKTGETVWEAKN- 66 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 +C G+V +N+ LY S E + RVE + +DE + D++ D T Sbjct: 67 --KCPGLVVVKANHSLYYKFSKYARQIYEYYTDRVESFGLDECWLDVSESTLLFGDGTKI 124 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIR + + +TV VG++ K AKL + ++ V ++ + + K+ L Sbjct: 125 ANEIRERIKRELGVTVSVGVSYNKVFAKLGSD-----MKKPDAVTVITENDFKEKIW-GL 178 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKH---FNVVLERTVRELRGEPCLQ 236 PV+ + +G KKL+ M + T+ DLA+ F+ + + L P + Sbjct: 179 PVEALLYVGDSTKKKLNNMAVFTIGDLANCHSEFLVRQLGKWGYTLWSFANGYDTSPVAK 238 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + P K I S + +T+ +R I + E+LRS + R + IK Sbjct: 239 NDCEIPIKS-IGNSLTAPRDLTNNEDVRILIYVLSESVGERLRSHNLKGRTVQISIKDPE 297 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQGV 355 E G L T + +I A W + GV + D S Sbjct: 298 LQTLERQAG------LDIHTSITSEIAQKAYEIFLKSWNWSKNVRALGVRVTDLVESDTC 351 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 Q++LF D+ R E L +D + + G Y +GI Q Sbjct: 352 TQISLFSDDIKRQKLEILDECVDRVRERFG---YYSVRRGILLQ 392 >UniRef50_C7I020 DNA-directed DNA polymerase n=1 Tax=Thiomonas intermedia K12 RepID=C7I020_THIIN Length = 415 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 117/411 (28%), Positives = 178/411 (43%), Gaps = 40/411 (9%) Query: 4 LCDVNAFYASCETVFRPDLWGKPV--VVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 L D N+++AS E P+L G+PV V + + C IA + EAKA GVK G + + Sbjct: 7 LVDFNSYFASVEQQLCPELRGRPVGVVPMLADTTCCIAASYEAKAFGVKTGT---QVAEA 63 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 R C G+V + + Y + +R ++ ++ ++P ++ SIDE C L R+ T Sbjct: 64 RRLCPGIVFVVARHAEYVQIHHRAVAVVDTIAPVEQVLSIDEMACSLPMGWTSRERATQL 123 Query: 120 GREIRATVLQRTH--LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV-DLSNLERQRKLM 176 ++A + + L V VGIA LAK A+ Q+ G VV D +L M Sbjct: 124 ALRLKAALREALGECLRVSVGIAPNVFLAKQAS----NLQKPDGLVVIDAGDLPGPLLRM 179 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 + D+ GI R+ +L A GI +V L R R+ VV E + + Sbjct: 180 Q---LTDLTGINVRMLARLQAQGIHSVEHL----WRARREQLRVVWGGMAGEAFYD---R 229 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAA------RAAEKLRSEHQYCRFIST 290 L A Q RS G P MR A + A +AA +LR EH ++ Sbjct: 230 LHGLASGVQAANPRRSLGHSHVLPPEMRSAEGALAVLDRLTQKAAMRLRREHLLAGAMTV 289 Query: 291 FIKTSPFALN--EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 +K + P G PT D+R +++ + AG K ++L Sbjct: 290 MLKLTRRHGERLRPERGAR-----FAPTADTRALLHTLRELWPGMVPAGWAPMKVAMLLH 344 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQ--LMTVMDTLNAKEGRGTLYFAGQGIQ 397 D G +LF+ + P +EQ L + +D LN + GR T+Y G G Q Sbjct: 345 DLRQPGQTSASLFEGDVPGTEAEQAALWSAVDALNVRYGRHTIY-CGSGHQ 394 >UniRef50_P63988 DNA polymerase IV 2 n=20 Tax=Corynebacterineae RepID=DPO42_MYCBO Length = 346 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 157/351 (44%), Gaps = 27/351 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDG-----CVIARNAEAKALGVKMGDPWFKQK 59 D++ F AS E + P+L G PV+V N D V + EA+A GV+ G P + Sbjct: 12 VDLDQFLASVELLRHPELAGLPVIVGGNGDPTEPRKVVTCASYEARAYGVRAGMP---LR 68 Query: 60 DLFRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 RRC F SN Y S V++ L +L VE++ DEA+ + D + Sbjct: 69 TAARRCPEATFLPSNPAAYNAASEEVVALLRDLGYPVEVWGWDEAYLAV-APGTPDDPIE 127 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 EIR +L +T L+ +GI+ K AK+A AK G+ L++ +M Sbjct: 128 VAEEIRKVILSQTGLSCSIGISDNKQRAKIATGLAKP-----AGIYQLTD-ANWMAIMGD 181 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN--VVLERTVRELRGEPCLQ 236 V+ +WG+G + +K+L +GI TV LA TD + F L + + G+ + Sbjct: 182 RTVEALWGVGPKTTKRLAKLGINTVYQLAHTDSGLLMSTFGPRTALWLLLAKGGGDTEVS 241 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + P + + +F +T M A+ A R ++ + + ++ ++T+ Sbjct: 242 AQAWVPRSRS--HAVTFPRDLTCRSEMESAVTELAQRTLNEVVASSRTVTRVAVTVRTAT 299 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVML 347 F Y + KL P+ D D+I AA R + +++ + GV L Sbjct: 300 F------YTRTKIRKLQAPSTDP-DVITAAARHVLDLFELDRPVRLLGVRL 343 >UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_9FIRM Length = 411 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 164/399 (41%), Gaps = 36/399 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV---LSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 CD+N FYAS E + P+L KPV V + G V+A+N AKA GV G+ ++ K Sbjct: 8 CDMNNFYASVECMLNPELKNKPVAVCGSVEERHGIVLAKNYAAKAFGVSTGEAIWQAK-- 65 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 ++C +V +YE Y S + ++E Y +DE + D+TG + Sbjct: 66 -QKCQDLVIVEPHYEQYMKFSKLAREIYGRYTDQIEPYGMDECWLDVTGSGCMGTGFEIA 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EIR TV LT+ G++ K AKL + K + + R+ + P Sbjct: 125 DEIRRTVKFELGLTISAGVSFNKIFAKLGSDMKKP------DAITCIEADSFREKIWCHP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPCLQL 237 D+ G+GR K L + GI T+ +LA T F++ +V+++ L P ++ Sbjct: 179 ASDLLGVGRATEKVLSSYGIHTIGELAATSDDFLKCRLGKNGLVIKKYANGLDDSPVMRS 238 Query: 238 EEFAPTKQEIICSRSFGERIT---DYPSMRQAICSYAARAAE---KLRSEHQYCRFISTF 291 + +P K S G IT D + + C E KLR+ + I+ Sbjct: 239 DYVSPVK-------SIGHGITTMQDLENNAEVWCVMLELVQEIGTKLRAHKKKAGGIAIS 291 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I+ N Y ++ PTQ + A +Q H + V + F Sbjct: 292 IR------NNELYTKEWQCRIGIPTQSPTYLAKTAFALFAKNYQWEHPIRSVTVRAINLF 345 Query: 352 SQGVA-QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 + Q +LF D E+L ++ + + G+ + Sbjct: 346 EEDCPIQYDLFTDVKSLDRQERLDAAIEQIRFRFGKDAI 384 >UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D1Q6_9CLOT Length = 435 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 107/398 (26%), Positives = 172/398 (43%), Gaps = 40/398 (10%) Query: 6 DVNAFYASCETVFR----P---DLWGKPVVV---LSNNDGCVIARNAEAKALGVKMGDPW 55 DVN+ + S E+V+R P DL P V + G V+A++ AK GV G+P Sbjct: 27 DVNSAFLSWESVYRLSADPQALDLRTIPSAVGGDAKSRHGIVLAKSTLAKQYGVTTGEPL 86 Query: 56 FKQKDLFRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR 114 + R+C + S ++ Y S+R+M LE +P E +SIDE F D+T + Sbjct: 87 AQA---LRKCPQLTVVPSRFDYYIKCSHRMMELLETYTPDHEKFSIDEIFLDMT-----Q 138 Query: 115 DLTDFGR------EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSN 168 + FG+ IR + TV +G+A K LAK+A+ K + T L Sbjct: 139 TIHLFGQPLEAANRIRERIRDELGFTVNIGVAPNKLLAKMASDFEKPDKCHT-----LFA 193 Query: 169 LERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE 228 E KL LP+ +++ +G +K++ +GI T+ LA D+ ++ H T+R Sbjct: 194 HEIPSKLW-PLPIRELFFVGGAAQRKMENLGIHTIGQLASCDLAVLKAHLGEKYAVTIRG 252 Query: 229 L-RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRF 287 G + E P + S + ++DY + Q I S +LR++ CR Sbjct: 253 YANGVDVDPVAEKDPINKCYGNSVTLSRDVSDYETACQVILSLCETVGARLRADRVLCRN 312 Query: 288 ISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVML 347 + +K F + S + L PT + + A R L W + GV Sbjct: 313 VCVELKDWEF------HTQSHQMILPEPTDSTSALYGYACRLLREFWDRT-PVRLIGVRA 365 Query: 348 GDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 G +QL+LFD + R + L +D + +K G Sbjct: 366 GKIDDDSFSQLSLFDSPSNR-KKKDLEKAVDQIRSKFG 402 >UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2F2_ACICJ Length = 411 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 113/400 (28%), Positives = 169/400 (42%), Gaps = 33/400 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E RP+L KPV+V G V A A+ GV+ P FK + L Sbjct: 37 IAHVDCDAFYASVEKRDRPELTDKPVIVGGGTRGVVAACCYIARLSGVRSAMPMFKARKL 96 Query: 62 FRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD----- 115 C V + YA + + + + L+P V+ SIDEA DL+G Sbjct: 97 ---CPDAVVIAPEMRKYAAAAAEIRALMATLTPLVQPLSIDEAALDLSGTAALHRAPPAV 153 Query: 116 -LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 L+ F R++ A V +TV +G+A + LAKLA K G + L + Sbjct: 154 VLSRFARQVEAEV----GVTVSIGLAANRLLAKLAAERDKPRGFAVLGAEAAAVLAPE-- 207 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 PV + G+G +++KL MGI V LA + R R RG Sbjct: 208 -----PVGILPGVGPALARKLAGMGITRVGQLAALNDRAARARLGEDGPMLAARARGIDP 262 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 ++ TK I +F E I D S+ + + + A +LR+E + +KT Sbjct: 263 RPIDPARATKS-ISAETTFAEDIDDAASLARVLFPLCEKLARRLRAEGFAAAGLVLKLKT 321 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 + F ++ +V+L PTQ + I AA L + AG RY+ G+ Sbjct: 322 ARF------ETHTHAVRLTAPTQLAETIFEAAKPVL--MRAAGPRYRLIGIGAARLTDAA 373 Query: 355 VA-QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 A + +L D PR + + ++ L AK G G + G Sbjct: 374 EADRGDLVDQETPRRAARE--DAVERLRAKFGTGIIRRGG 411 >UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA2_9FIRM Length = 469 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 104/390 (26%), Positives = 172/390 (44%), Gaps = 25/390 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQKDL 61 D+N YA E + P+L +P+ V + + G ++A+N AK ++ G+ + + Sbjct: 55 SDINHCYAQIEEMLNPELKQRPMAVGGSQEERHGIILAKNLHAKKYKIQTGETLDEARI- 113 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 +C ++ +Y Y ++++V + E + RVE Y +DEA+ DLT R + Sbjct: 114 --KCPQLLILPPDYRRYQRITDQVKAIYREYTDRVEEYGLDEAWLDLTQSQRLFGPASQI 171 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+ V LT+ +G++ K AK+A+ K G V ++ Q K+ L Sbjct: 172 ARTIQQRVYAELGLTISIGLSFNKIFAKMASDFVK-----PSGFVTITRANFQEKIY-PL 225 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +++ +G KKL+A GI T+ DLA D +F+R++F V E GE + E Sbjct: 226 SVRELFYVGAATQKKLEAWGITTIGDLASRDRQFMRRYFGKVGEMLHWFALGE---DISE 282 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A E I +S G +T + AR ++ +E R +K AL Sbjct: 283 VA-LASEAIPVKSVGNSVTAVHDLH---THGEARLVLRVLAESVASRLRDQGLKGKGIAL 338 Query: 300 ---NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGV 355 + + S K PTQ + +I+ A L WQ + G+ + D Q Sbjct: 339 SLRDIHLFRWSLQRKRARPTQLAEEILEDAEILLRQAWQNALPLRSIGISVFDLCLDQTG 398 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 QL+LF D R QL +D + + G Sbjct: 399 EQLDLFVDEQHRQSLLQLEKTVDGIRRRFG 428 >UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM9_9FIRM Length = 409 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 101/364 (27%), Positives = 165/364 (45%), Gaps = 24/364 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQKDLFR 63 D+NAF+AS E + P L GKPVVV V++ + EA+ GV P + + Sbjct: 20 IDLNAFFASAEILLDPSLEGKPVVVSGLTKRSVVSTASYEARQFGVHSAMPI---NEALK 76 Query: 64 RCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV--RNCRDLTDFG 120 C +V ++ Y +S + +S +++ + RVE SIDE + D++ R R L D Sbjct: 77 LCPQLVVVKGHHGYYEQLSEQFISYVKKYTDRVEQASIDECYADMSQAIHRFPRPL-DLA 135 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +++ +L HL +G+A K LAK+A+ K G+ L E KL LP Sbjct: 136 WQLQQELLTDLHLKCSIGVAPNKFLAKMASDMKKPM-----GITVLRKQEVPVKLW-PLP 189 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++D+ GIG++ + ++ A+GIKT+ DLA D +R ++ GE ++ Sbjct: 190 IEDMRGIGKKTAPQMKALGIKTIGDLAAADPEQLRPLLGKNTMTYIQRANGEDDREIISD 249 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A K + S + + +R A + +E++ E + +S I+ F N Sbjct: 250 AEIKS-MSQSTTLNYDFSTEEEVRTLFRKLANKLSERMIEEDKMGTIVSISIRY--FDFN 306 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-AGHRYQKAGV-MLGDFFSQGVAQL 358 N S KL P S D+ A D ++ R+ GV L Q + Q+ Sbjct: 307 ----TNVRSRKLDHPVYRSEDLFELAMELFDENYEDQPMRHLGIGVGSLSSIHDQKI-QM 361 Query: 359 NLFD 362 NLF+ Sbjct: 362 NLFE 365 >UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia RepID=B9MMT7_ANATD Length = 411 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 99/396 (25%), Positives = 170/396 (42%), Gaps = 31/396 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQKDL 61 CD+N FYAS E +++P+L KPV V ++ G V+A+N AK+ G++ GD ++ Sbjct: 8 CDLNNFYASVECLYQPELRNKPVAVCGESELRHGIVLAKNQIAKSYGIQTGDVIWQA--- 64 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL---TGVRNCRDLT 117 ++C +V N+ LY S V E + +E + IDE + D+ TG+ R Sbjct: 65 LKKCPNLVILKPNFPLYIRFSKLVQRIYSEYTDLIEPFGIDECWLDVSQSTGI--LRSGR 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 EI+ + LTV VG++ K AKL + K V + E ++++ Sbjct: 123 KIAYEIKERIKSELGLTVSVGVSFNKVFAKLGSDYKKP------DAVTVITKENFKQIVW 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRK---HFNVVLERTVRELRGEPC 234 LP D+ +G KKL + I T+ D+A + ++++ + VL L P Sbjct: 177 PLPAKDLLYVGSATEKKLSSRAIYTIGDIAKSSPEYLKRILGKWGEVLWIFANGLDTTP- 235 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + F + I S + +T Y I + A++LR ++ C + +I+ Sbjct: 236 VTPPLFEDNIKGIGNSITLPRDLTCYEDAEYVIRMLSESVAQRLRQQYLKCYTVQVWIRD 295 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQ 353 S + + KL PT +R+I A W + + GV D + Sbjct: 296 SFL------FSITRQEKLKNPTFLAREISQKAFEIFKKHWNFKNSIRSLGVRALDLVCAN 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 QL D+ + EQL +D + + G+ + Sbjct: 350 SFYQLEF--DSLKKFKLEQLEKTVDQIRRRFGQSAV 383 >UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=DPO4_CLOK5 Length = 400 Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 24/228 (10%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 L D+NAF+ SCE+ P++ GKP V N G ++ N EA+ GVK K Sbjct: 7 LVDMNAFFISCESTRHPEIIGKPAAVAGDPKNRSGIILTANYEARKFGVKTTMVLHK--- 63 Query: 61 LFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 + + C ++ ++ Y S VM L + +P +E SIDEA+ D+TG C + F Sbjct: 64 VLKLCPNIIIIPPDHCFYKQKSKEVMGILSKYTPVIEKNSIDEAWLDMTG---CERI--F 118 Query: 120 GREIRATVLQRTH------LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR 173 GR + H L +GI++ K LAK+A+ K G+ L + + Sbjct: 119 GRSYQTAECIMKHINSELGLDCSIGISENKFLAKMASQMKKPL-----GITKLWKKDIEL 173 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV 221 KL LPV+ + GIG++ ++KL M IKT+ +LA+ D R++ K V Sbjct: 174 KLW-PLPVEFMNGIGKQTARKLREMKIKTIGELANFDRRYLIKKLGKV 220 >UniRef50_Q6F1D8 DNA polymerase IV (PolIV) n=1 Tax=Mesoplasma florum RepID=Q6F1D8_MESFL Length = 370 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 144/291 (49%), Gaps = 10/291 (3%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+ASCE L KPVVV NND ++A + +A+ G+K G P F+ K L Sbjct: 10 DMDAFFASCEQAHDKTLKNKPVVVARNNDRSIIVAASYDARKYGIKAGTPIFEAKQL-AY 68 Query: 65 CGVVCFSSNYELYADMSNRVMSTL-EELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGRE 122 ++ N +LY + S R+ + + E+ + +VE+ IDE F D T + ++ + Sbjct: 69 GELIIKEGNRDLYEEYSERIFNLIKEQFTYKVEVLGIDECFIDATNIWEKYGNVQNLCLA 128 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+A V Q T LT +G + T+ +K+ + ++ G+ ++ E + L+ + Sbjct: 129 IQAAVYQETGLTCSIGASFTRLFSKMGSD-----MKKPNGITIITK-ENFKTLIWNKSIK 182 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 DV G+G +K++ + +KTV D D + I F + ++ ++L G ++ + Sbjct: 183 DVIGVGSSSLEKMELLNVKTVNDFVKLDEKIIADSFGLSGQKMYQKLHGIKNDEIAYWET 242 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 + + I ++F ++ + + + + A + +++ + + ++ IK Sbjct: 243 SVKSISKEKTFDKKNMAIEDIEEILFNLAEKVVLRMQKNNILAKTVTLSIK 293 >UniRef50_UPI0001745AF1 DNA-directed DNA polymerase n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745AF1 Length = 405 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 116/407 (28%), Positives = 180/407 (44%), Gaps = 48/407 (11%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVL---SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + D+++F+AS E P L G+PV V+ S + C IA + EA+ GVK G + +D Sbjct: 6 ILDLDSFFASVEQQLDPRLRGRPVGVVPVKSESTSC-IAASKEARRFGVKTGT---RVRD 61 Query: 61 LFRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 + C + F S LY + R ++ LE E+ SIDEA+C L V N Sbjct: 62 ARQLCPEIVFVESRPRLYTEFHQRFVTALESRIQVAEVMSIDEAWCLLPKSVTNRTQAEA 121 Query: 119 FGREIRATVLQRTH--LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 F R ++AT+ + LT +GIA + LAKLA+ K DL + Q KL Sbjct: 122 FARSLKATLTSQVGDWLTYSIGIAPNRFLAKLASDMGKPDGLFMIEQADLPHCLHQLKLR 181 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE-LRGEPCL 235 D GIG+++ +L A GI+TV L + + + + LRGE Sbjct: 182 ------DFCGIGQKMETRLVAHGIRTVAQLTSATRETLHHVWGGIGGVHLWHWLRGE--- 232 Query: 236 QLEEFAPTKQEIIC-SRSFGERITDYPSMRQAICSYAARAAEKLRS-EHQYCRFISTFIK 293 + E PT++ +I S R+ + C +AA +LR +H CR + FIK Sbjct: 233 -VTEPPPTQRRVIGHSHVLPTRLRNDLGTHAVSCRLLQKAAMRLRKMDHFTCR-LELFIK 290 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-----QAGHRYQKAGVMLG 348 + N P + + S TQD+ ++ A + +W +AG + GV L Sbjct: 291 YT----NSPSWSSDIS---FCDTQDTFRLLEA----FEVLWDRRPRRAGLEPKATGVNLS 339 Query: 349 DF--FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 ++ L FD +QL +MD +N + G+ + F G Sbjct: 340 GLAPATKVTPSLLEFDKR-----QQQLCGLMDAINKRYGQNAVCFGG 381 >UniRef50_D1BHR1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Actinomycetales RepID=D1BHR1_SANKS Length = 489 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 154/336 (45%), Gaps = 24/336 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQKD 60 A D +AF+AS E RP L G+PV+V V+A + EA+A G + P + + Sbjct: 7 IAHLDADAFFASVEQHQRPSLRGRPVLVGGVGPRGVVATASYEARAYGARSAMPMEQARR 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTDF 119 + VV ++ Y+ S ++M L E+S +VE SIDEAF +L + + DL Sbjct: 67 MCPTATVVV--PRFDAYSAYSAQIMEVLREVSEQVEAISIDEAFAELDHLPGSSADLEAL 124 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 E R +RT L+V +G+ ++K +AKLA+ AAK G V + + + + AL Sbjct: 125 ALEFRRRAHERTGLSVSLGLGRSKLVAKLASEAAKP------GGVKVVDPADEDAFLLAL 178 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDL----ADTDIRFIRKHFNVVLERTVRELRGEPCL 235 PV +WG+G + +LD +G++TV DL DT + + L R R P Sbjct: 179 PVRALWGVGPVSAARLDQLGVRTVEDLRAQPMDTLVMATGEAAGTNLYRIARGWDDRPVT 238 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + E ++ +F + + ++ A+ A +L R + ++ + Sbjct: 239 TVRE----RKSAGAEHTFDDDLHGRRAIAAALDGVTDSALRRLDRHGVAARTVVVKVRVA 294 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 F + SV L PT D + AA R+LD Sbjct: 295 SFTT------ITRSVTLSRPTSDVDALREAARRALD 324 >UniRef50_C5IWL2 UV repair DNA polymerase n=21 Tax=Gammaproteobacteria RepID=C5IWL2_ECOLX Length = 102 Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 49/76 (64%), Positives = 58/76 (76%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FYASCE +FRPDL PVVVLSNNDGCV+AR+ EAK LG+KMG P F+ K Sbjct: 16 VFALVDCNNFYASCEKLFRPDLKDTPVVVLSNNDGCVVARSREAKLLGIKMGVPVFQIKA 75 Query: 61 LFRRCGVVCFSSNYEL 76 +R G++ FSSNY L Sbjct: 76 EMQRHGILAFSSNYAL 91 >UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVJ8_9FIRM Length = 405 Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 83/332 (25%), Positives = 145/332 (43%), Gaps = 18/332 (5%) Query: 35 GCVIARNAEAKALGVKMGDPWFKQKDLFRRCG-VVCFSSNYELYADMSNRVMSTLEELSP 93 G V+A++ AK G+ G+P + ++C +V ++ELYA S + + LEE++P Sbjct: 55 GVVLAKSPSAKKYGIMTGEPLSHAR---QKCPELVVVPPDHELYAASSRKFIEILEEVAP 111 Query: 94 RVEIYSIDEAFCDLTGVRNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHA 152 +E SIDEAFCD+TG D F +++ + + TV +GI+ K LAK+A+ Sbjct: 112 VIEQCSIDEAFCDMTGTEKLYGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDF 171 Query: 153 AKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIR 212 K + T L E K LPV+ ++G G+ +K+L ++GI T+ LA D + Sbjct: 172 EKPNRVHT-----LFPEEMATKFW-PLPVESLYGCGKTTAKRLRSLGITTIGALAKADRQ 225 Query: 213 FIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAA 272 + +F + G + +P + S + +TD + + S Sbjct: 226 MLLSNFKSQGDYLWESANGISSSAVTAESPANKGYGNSVTLPYDVTDTENAHHILLSLCE 285 Query: 273 RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA 332 ++R + Y + I ++ ++ + L + T + I AA + D Sbjct: 286 TVGARIRYDKAYISVVQVQI------VDNDFHHRCKQLSLPSATNVTEKIYEAACNAFDQ 339 Query: 333 IWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDN 364 W + GV + Q NLFD + Sbjct: 340 GWDHA-PIRLLGVSTSKATDESYEQYNLFDQD 370 >UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatella RepID=C8NE97_9LACT Length = 352 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/296 (27%), Positives = 141/296 (47%), Gaps = 12/296 (4%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+AS E P+ GKPV+V N G V + EA+A GV+ P K L Sbjct: 7 VDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTAKAMKLC 66 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFGR 121 + + NY LY ++S++V + + +E SIDEA+ D+T R T Sbjct: 67 PKA--ILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTNNSRGIASATLVAH 124 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ V ++T LT VG++ K LAK+A+ +Q+ +G + + E ++ + +P+ Sbjct: 125 LIQKEVYEKTGLTCSVGVSFNKFLAKMAS----GYQKPSG--ITVITPENAQEFIRTIPI 178 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D +G+G+ ++KL GI+T DL + F + R ++RG QL + Sbjct: 179 GDFYGVGKVSAEKLRRAGIETGEDLLHLSKAELESRFGNLGPRLYAQVRGISNDQLTLYR 238 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 K + R+ + TD+ + + + ++ A L+ R IS ++ S F Sbjct: 239 ERKS-MGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRALASRTISLKLRDSNF 293 >UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRW0_ALIAD Length = 409 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 12/205 (5%) Query: 7 VNAFYASCETVFRPDLW-GKPVVVL---SNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 +NAFYASC P + GKP+ V S G V+ + EA+A GVK P + L Sbjct: 1 MNAFYASCHAAVDPARYAGKPIAVAGDPSTRHGIVVTASYEARARGVK--PPMPVHQALA 58 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R ++ ++ LY + +V + + E +P VEI SIDE + D+T V R Sbjct: 59 RCPELIVVRPDFHLYRAYARKVFAIVREFTPDVEIVSIDECYADVTHVPGGDRPVHLARA 118 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+A +L L +G+A K LAK+A+ K G+ +L + E R L+ L ++ Sbjct: 119 IQARLLDSLGLPSSIGVAPNKFLAKMASDMKKPM-----GITELRS-ENIRSLLWPLAIE 172 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLA 207 + G+G +K+L +GI T+ DLA Sbjct: 173 HMHGVGPSTAKRLRRLGILTIGDLA 197 >UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomycetales RepID=A6CAV0_9PLAN Length = 388 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 100/376 (26%), Positives = 166/376 (44%), Gaps = 47/376 (12%) Query: 7 VNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 ++AFYAS E P+L G+P++V + + G V A N A+ GV P + L + Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIR 124 F YA++S + + +P VE S+DEAF D++G + L GREI Sbjct: 61 AH--FFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSG---SQLLFGNGREIA 115 Query: 125 ATVLQRT----HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 A++ Q L VG+A K LAK+A+ A K G+V + ++ ++ + LP Sbjct: 116 ASIKQEVRHSLQLIASVGVAPNKFLAKIASDADK-----PDGLV-VVEPDKIQEFLDPLP 169 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V VWGIG+ +++ + +GI+T+ V+ + + EL GE L L Sbjct: 170 VSRVWGIGKMATQRFNRLGIQTI------------SQVRVLEPKILTELFGEQGLHLWNL 217 Query: 241 A---------PTKQEIICSR--SFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 + P +Q SR +F + D +R + + +LR + I Sbjct: 218 SQGLDERAVIPERQAKSISRETTFSSDVNDLEILRIILMDLVEDVSRRLRKNKLRGKTIQ 277 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD-AIWQAGHRYQKAGVMLG 348 I+ F+ + S+ + PT +R+I +A LD + + + GV + Sbjct: 278 LKIRYDDFST------FTRSITVSQPTDLTREIEQSALLMLDQKLPERPLSIRLIGVGVT 331 Query: 349 DFFSQGVAQLNLFDDN 364 F S Q +LFD+ Sbjct: 332 GFQSGSQHQKSLFDEE 347 >UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Rothia mucilaginosa RepID=D2NU69_9MICC Length = 479 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 32/314 (10%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI-ARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+ + E + P L G+P++V V+ + + EA+A GV+ G P + ++L Sbjct: 31 LDMDAFFVNVELLENPALRGEPIIVAPLGPRSVVCSASYEARAHGVRSGMPLSRARNLSP 90 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTDFGRE 122 V+ +Y Y S VM+ L +LSP VE S+DEAF DLTG + +D + Sbjct: 91 NATVLPLRGDYRHY---SRAVMAILNDLSPYVEQVSVDEAFVDLTGAYLHGQDPVALAQS 147 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK---WQRQTGGVVDLSNLERQRKLMSAL 179 R + Q L G+A K LAK+A+ +K W + ER ++ + Sbjct: 148 ARDRIAQELSLPSSAGVAPNKLLAKMASTGSKPNGLW---------VIPPERVQEFLDPR 198 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV----LERTVRELRGEPCL 235 V ++WG+G + +++L GI T+ + + ++++ F L R + P + Sbjct: 199 KVSNLWGVGVKSTEQLSRYGIHTIAQMRSMSLDWLKERFGTAQGEHLWAMARGIDERPVV 258 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E ++ + +F TD + AI + + ++LR+ + +S I+ S Sbjct: 259 TERE----EKSMGGEHTFETDTTDAQEVSAAIRELSLKLGKRLRAAGKLAGGLSLKIRYS 314 Query: 296 PF-------ALNEP 302 F ALN P Sbjct: 315 TFETHTRAIALNVP 328 >UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms RepID=A4CII2_9FLAO Length = 366 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 24/331 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+AS E +P+L G+P+ V G V A + EA+ GV+ + + L Sbjct: 13 IDMDAFFASVEQRDQPELRGRPIAVGGGAKRGVVAAASYEARTFGVRSAMSGVQARRL-- 70 Query: 64 RCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDFGR 121 C + F ++ Y ++S ++ E + VE S+DEA+ D+T R T R Sbjct: 71 -CPELVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVTANRKGMPSATLIAR 129 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 EIR +L+ T LT GI+ K +AK+A+ K ++T D+ ++ + +L + Sbjct: 130 EIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDV------QEFLESLEI 183 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 G+G+ ++K++A+GI T DL F+ HF R +RG + Sbjct: 184 RKFHGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVVRG---VHDSPVQ 240 Query: 242 PTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P++ + + R+F E ++ M + + A + +LR+ ++ + I+ I+ S F+L Sbjct: 241 PSRVPKSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTITLKIRYSDFSL 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSL 330 + L DS + I AA R L Sbjct: 301 Q-------TRSRTLAEYIDSPERILAAARDL 324 >UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales RepID=C6CYA7_PAESJ Length = 422 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/398 (24%), Positives = 167/398 (41%), Gaps = 29/398 (7%) Query: 6 DVNAFYASCETVFRPDLW-GKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQKDL 61 D+NAFY S P+ + GKP V + + G ++ + A++ G+K G + Sbjct: 19 DMNAFYCSVHEAEEPEKYKGKPTAVAGSVELRKGIIVTCSYAARSKGIKTG---MTVRQA 75 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 R C ++ ++ELY S M E +P VE SIDE + D+TG + + Sbjct: 76 MRMCPNLIIIQPDFELYRKYSRGFMKIAREYTPLVEPISIDECYMDITGSKIFGSPLEIA 135 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL- 179 ++ + + L +G+A K LAK+A+ ++ G+ L R R + + L Sbjct: 136 EALQKRIAEEWTLPCSIGVAPNKLLAKMASD-----MKKPNGLTVL----RLRDVPTILW 186 Query: 180 --PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 P D + G+G++ + KL+ + I+T+ LA D + + F + G ++ Sbjct: 187 DKPCDVLHGLGKKTADKLERLRIRTIGQLAAADEELLIRQFGIYGSWMKSAAHGIDHSEV 246 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + I + + +TD + + + A + A +LR + + I+ Sbjct: 247 RADREQSKSIGHTTTLPYDVTDREDAHRILLNLADQTARRLRRQKLMASTVQITIRKPDM 306 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGV 355 A + S L PT + I + A R D W+ + GV L + + + Sbjct: 307 AT------ITRSSTLRAPTHSTDMIYHEACRLFDEHWKGSEPARLLGVTLQNLTAEEETA 360 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 QL+LFD +P E L MD L K G + AG Sbjct: 361 VQLDLFDYKE-QPRKEALTKTMDVLRDKFGENAVLTAG 397 >UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0S0R3_FINM2 Length = 347 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 12/299 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKD 60 F D++AF+ASCE + P L P+VV + G + N EA+ G+ P F+ K Sbjct: 5 FLHFDLDAFFASCEILDNPKLKHVPMVVGGRSQRGIITTANYEARKYGLHSAMPIFQAKK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + +V + ++E Y S +V L S +++ SIDE D++ +R D + Sbjct: 65 IV--PNLVIVAPDFEKYRRNSEKVFKVLSSFSNKIQKMSIDEGCMDISHIR--MDRLELA 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I+ V +T L++ +GI+ +LAKLA+ W + G + + + ++ L Sbjct: 121 NLIQENVRIKTGLSISIGISYNMSLAKLASD----WNKPHG--IKIITQDDIPNILLDLK 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + GIGR+ +KL+ +GIK V DL D +R+ F E +RG QL + Sbjct: 175 VGKIQGIGRKSEEKLNKIGIKKVSDLYDLSRNNLRELFGKFGEVIYDRIRGIDERQL-DL 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + ++ I +F + +Y + ++ ++ L ++ + I IK + F++ Sbjct: 234 SRIRKSIGVEYTFERDLKNYNELLNKASEFSEELSDDLHKKNIKAKTIRIKIKLNDFSV 292 >UniRef50_A7MP32 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC BAA-894 RepID=A7MP32_ENTS8 Length = 90 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/73 (67%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Query: 346 MLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 +LGDFFSQGVAQLNLFD++APR SE L+++ D N ++GRGTLYFAGQGIQQ WQMKR Sbjct: 11 ILGDFFSQGVAQLNLFDESAPRANSEALISLRDKFN-QQGRGTLYFAGQGIQQSWQMKRE 69 Query: 406 MLSPRYTTRSSDL 418 LSP TT +D+ Sbjct: 70 RLSPCCTTWLADV 82 >UniRef50_A4TZ00 UmuC protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZ00_9PROT Length = 200 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 7/191 (3%) Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +L A KQ CSRSF E +T Y + A+ ++A+RAAEK+R++ + F +T Sbjct: 12 RLTPTAVAKQTTCCSRSFAEAVTLYDHVHDAVLTFASRAAEKIRADGLVAGALQVFAQTD 71 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F ++P + +A V+L T + +I AA L + W+ G+ Y+KAGV+L D + Sbjct: 72 RFRRDQPQFSLNAMVRLSPATDSTPRLIAAAISGLHSAWRDGYAYKKAGVILIDLVNPAN 131 Query: 356 AQLNLFDDNAPRPGS----EQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 +LF +P P + + LM +D LN + G+G + + WQM+ SP Y Sbjct: 132 IARDLF---SPPPDTGARAQALMNAVDGLNNRMGKGAVGYGLVAKGAPWQMRCGNRSPSY 188 Query: 412 TTRSSDLLRVK 422 T+ DL K Sbjct: 189 TSDWMDLPVAK 199 >UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria RepID=B9M459_GEOSF Length = 420 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 20/225 (8%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIAR-NAEAKALGVKMGDPWFKQKDLFRR 64 D+NAF+AS E P L GKPV V+ ++ ++ + EA+A GVK G ++ K Sbjct: 19 DMNAFFASVEQQNDPRLRGKPVAVVGSSKRTIVTTCSYEARAFGVKTGMALWEAKSCCPN 78 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE-- 122 ++ N E Y +S+ +M + + +P VE +SIDEAF D++G L+ FG Sbjct: 79 L-ILVVGKNRE-YTRISSLIMKLMYDFTPLVETFSIDEAFLDISG-----SLSLFGTPEN 131 Query: 123 ----IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++A + + LT +GIA K LAKLA+ K G+ + E M Sbjct: 132 IASLLKARIGDQFGLTCSIGIAPNKLLAKLASDMQKP-----DGLTVIKPAEVALT-MDR 185 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE 223 P+ D+ GIG++ K L +GI+T DL ++ +R+ F +V E Sbjct: 186 TPIRDMCGIGKKTEKSLTMLGIRTCGDLGRFPVKLLRQKFGIVGE 230 >UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5X9_METB6 Length = 365 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN-----NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P++ GK VVV ++ G V + EA+A GV+ P + Sbjct: 16 ADMDCFYAAVEMHDHPEIAGKAVVVGADPQGGAGRGVVSTASYEARAFGVRSAMPISQA- 74 Query: 60 DLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 +R C G V + YA +S +M +E RV+ SIDEAF D++ VR+ D Sbjct: 75 --YRLCPGAVYLRPDMARYAAVSAEIMGIFKETGYRVQQVSIDEAFLDISPVRSFDTARD 132 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++ T+ R +T +G+A +K +AK+A+ Q+ G + + + R ++ Sbjct: 133 LAVRLKQTIRDRVGITCSLGVAPSKIVAKIAS----GHQKPDG--MTVVTPDSARDFLAP 186 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN 219 LP+ + GIG + +++A+GI T+ +LA DI+ + F Sbjct: 187 LPIRKIPGIGGKTGAQIEALGITTIGNLATCDIQVLVGAFG 227 >UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBK8_9FIRM Length = 389 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 100/410 (24%), Positives = 173/410 (42%), Gaps = 45/410 (10%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQKDLFR 63 D+N+F+AS E + L G+PVVV + V++ + EA+ GV P Sbjct: 9 IDLNSFFASAEVLKNSALEGQPVVVAGMHRRSVVSTASYEARNYGVHSAMPLHMA---LE 65 Query: 64 RC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFGR 121 +C +V +Y Y ++S R + ++ SP +E SIDE + D+T +R + D Sbjct: 66 KCPQLVVVQGDYAWYEELSRRFFNYVKRFSPYLEPASIDECYIDVTEAIRAYKRPLDLAW 125 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ V + L +G+ +K LAK+A+ R+ G+ L E +RKL L + Sbjct: 126 RIQKGVYEDLRLPCSIGVGPSKFLAKMASD-----MRKPMGITVLRRQEIERKLW-PLSI 179 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE-- 239 D++GIG++ L+ GI T+ D A N E + L G+ QL + Sbjct: 180 ADMFGIGKKTVPLLERQGIYTIGDFA-----------NPANEAKIMALMGKHAYQLIQNA 228 Query: 240 ---------FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 + + Q I S + I +Y ++ A + +++ + E IS Sbjct: 229 RGFGSNRLDYNTSVQSISQSTTLDTNIVEYEEVKSVFKRLANKLSQRAKQEDLRGALISI 288 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 I+ + F N+ ++ + D++ L G + G+ LG Sbjct: 289 SIRYADFT-------NAVRSTTISEYTNDADVLLEHALLLFDQHNNGKEIRHLGIGLGSL 341 Query: 351 FSQ--GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 FS+ V Q+NLF D P ++ LN + G L A + +++ Sbjct: 342 FSKTRTVDQINLFQDVKAEPTDS--TDILKQLNKQLSTGKLMKASELLKK 389 >UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHB3_CORU7 Length = 477 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/329 (27%), Positives = 146/329 (44%), Gaps = 23/329 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 A D++AFYAS E + RP L +PV+V + G V + EA+A G + P + Sbjct: 4 VAHIDMDAFYASVEQLTRPTLRDRPVLVGGMSGRGVVAGASYEARAYGARSAMPMHQAIR 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R +V + LY +S R+ + E + VE S+DE F + G+ + + Sbjct: 64 LCRNRAIVIQPRSV-LYKMISRRIFQVIAEHAGVVEQLSVDEGFAEPQGLVDAAAARRWA 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +++ V + T L +G+A TK AK+A+ AK + +E + P Sbjct: 123 EDLQRAVEEATELPCSIGMASTKLDAKMASDLAKPH--------GIFVVEDRMATFGPRP 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLEE 239 V D+WGIGR KL +G+ T+ D D ++ V LE V +P Sbjct: 175 VGDLWGIGRVAQAKLADIGVHTIQQFVDMDPTDVKSLLGKVGLEVQVMAGGDDP----RP 230 Query: 240 FAP--TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 AP ++I ++ Y + + A +A +LR + + R I+ I+TS F Sbjct: 231 VAPRAEAKQISAEQTLPVDARTYRDVLNIMELSARQAYRRLRKDGRAARTITVKIRTSDF 290 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAA 326 AL ++ S L PT D ++ AA Sbjct: 291 AL------HTRSTTLPAPTDDFEQLLRAA 313 >UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YPB9_9FIRM Length = 510 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 108/200 (54%), Gaps = 16/200 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+AS E + P+ G PV+V LS+ G V + EA+ GV P + K L Sbjct: 8 VDMDAFFASIEQLDHPEYKGHPVIVGGLSSR-GVVATCSYEARKFGVHSAMPISRAKKL- 65 Query: 63 RRC--GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-F 119 C G+ + + Y ++SN++ S ++E +P +E SIDEAF +++G+ Sbjct: 66 --CPDGIYVYP-RMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKAL 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 GR I+ V ++T L + G+A K LAKLA+ K G+V + R+RK+++ L Sbjct: 123 GRAIKDRVFEQTGLIISAGLAPNKFLAKLASDLDK-----PDGLVVIP-YGRERKVLAPL 176 Query: 180 PVDDVWGIGRRISKKLDAMG 199 P+ +WG+G R K L A G Sbjct: 177 PIKRIWGVGPRTEKILKAGG 196 >UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteriaceae RepID=C8WAH8_ATOPD Length = 444 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 98/421 (23%), Positives = 174/421 (41%), Gaps = 52/421 (12%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P+ GKPV+V + G V + EA+ GV Sbjct: 25 IGLLDLDAFFASVEQLDHPEWRGKPVIVGGSPHKRGVVSTASYEARKYGVHSA---MASA 81 Query: 60 DLFRRCGVVCFSSN-YELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 + C ++ Y Y++MS+ VM L++ +P VE SIDEAF D+T R Sbjct: 82 TAVKLCPQAIWTPGRYNRYSEMSSLVMGFLKDETPLVEQVSIDEAFFDITPGR------- 134 Query: 119 FGREIRATVLQRTH-------LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 F +E + +R +T +G+ KT+AK+A+ + ++ G E Sbjct: 135 FSKENPLEICKRIQKKVAALGITCSIGLGTNKTIAKIAS----EQEKPRGLTAVFPGTES 190 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 ++ LP++ + GIG ++K L GI+T+ +L+ D ++ + + +G Sbjct: 191 H--FLAPLPIEAMSGIGPAMAKTLHQQGIRTLGELSRADSTYLTSFVGNTASKMILRAQG 248 Query: 232 EPCLQLEEFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 + ++ E A + + + R+F + D + +AI + +LR + ++ Sbjct: 249 KEVSEVHEAAHPRDVKSVSNERTFETDLFDKQEIEEAIRHISGVVGRRLRKKQLQGFTVT 308 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 +K S ++ ++ PT D A L IW+ G + GV + Sbjct: 309 LKVKAS------ATESHTVQKRMSIPTDDEHLFAEIAVNLLPTIWKEGQPVRLLGVGISS 362 Query: 350 FFSQGVA---QLNLFDDN---------------APRPGSEQLMTVMDTLNAKEGRGTLYF 391 F + + Q +LFD + PR L V D L K G + + Sbjct: 363 FTDEDNSKPVQTSLFDQSEDTFNTGASVPTTKKKPRSDLRHLSEVTDKLKDKFGASVVQY 422 Query: 392 A 392 Sbjct: 423 G 423 >UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS21_DESOH Length = 384 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 164/375 (43%), Gaps = 29/375 (7%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVV-LSNNDGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AF+AS E + P+ G+ VVV S+ G V A + EA+ GV P + Sbjct: 1 MILHVDMDAFFASVEQLDHPEWRGRAVVVGRSSGRGVVAAASYEARVFGVHSAMPMSRAL 60 Query: 60 DLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 L C + E Y ++S RVM L+ +SP VE SIDEA+ D++G + Sbjct: 61 KL---CPDAIVAPPRMERYKEVSARVMEILDAVSPLVEQVSIDEAYLDISGCERLHGTPE 117 Query: 119 -FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 G+ I+ V +T VG+A K LAK+A+ K G +V L E + + Sbjct: 118 TIGKNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKP----DGLMVILP--EAADRFIE 171 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL-RGEPCLQ 236 LPV V G+G K+L MGI+T+ D+ + K R ++EL RG + Sbjct: 172 TLPVHKVPGVGSVTKKQLALMGIETLGDVVRLPDGVLSKKLG-KFGRRLKELSRGIDDSR 230 Query: 237 LEEFAPTK---QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 + + P K +E SR E+ +R + A L+ + R + IK Sbjct: 231 VVPWHPAKSVSEETTLSRDTAEK----QELRHHLLRQAGDVCRHLQKLNARARVVFIKIK 286 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FS 352 + F+ + L P Q S I A+ L+ A + + GV + + + Sbjct: 287 YADFS------QTTRQTTLDAPVQSSDTIYRQASALLEKQTLA-QKVRLIGVGVTELVVT 339 Query: 353 QGVAQLNLFDDNAPR 367 G Q+ LFD A R Sbjct: 340 SGGVQMELFDGEARR 354 >UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R0_DESRD Length = 397 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 13/202 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+AS E P+L G+PV+V G V A + EA+ GV+ P + + L Sbjct: 8 VDMDAFFASIEQQDYPELQGRPVIVGGGERGVVSAASYEARRFGVRSAMPISQARKL--- 64 Query: 65 C--GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGR 121 C G C ++ Y ++S +VM+ L+ SP VE SIDEA+ D+TG R + GR Sbjct: 65 CPNGNFCH-GRHKRYKELSRQVMTVLDGFSPCVEQASIDEAYLDITGTERLLGPPGEVGR 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++ + RT L+ +GIA K +AK+A+ W + G + E+ + + LPV Sbjct: 124 ALQQAIRVRTGLSASIGIAPNKFVAKIAS----DWDKPGG--LTWIRAEQLQTFLDKLPV 177 Query: 182 DDVWGIGRRISKKLDAMGIKTV 203 + G+G R S L+ +G+++V Sbjct: 178 RKLPGVGPRTSALLERLGVESV 199 >UniRef50_A1WWK8 Putative uncharacterized protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WWK8_HALHL Length = 175 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/95 (47%), Positives = 63/95 (66%) Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P + VWG+G+R++ +L +GI+T DLA R IR+HF V L RT ELRG C LE Sbjct: 22 PENAVWGVGQRLADRLAELGIQTTEDLARLPPRRIRQHFPVTLARTAEELRGCACHDLES 81 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARA 274 +Q+I+CSR+FG + D P++R+A+ YAARA Sbjct: 82 EPAPRQQIVCSRTFGTPVRDKPALREAVADYAARA 116 >UniRef50_A3TNV0 Putative uncharacterized protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TNV0_9MICO Length = 347 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 101/364 (27%), Positives = 163/364 (44%), Gaps = 52/364 (14%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D +AF+AS E P L G+P+VV C + EA+ALGV G P F+ + Sbjct: 12 ADADAFFASVEQRDHPHLRGRPMVVGPQVVACA---SYEARALGVHAGMPLFQAVRRWPE 68 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR--- 121 V F + + Y S +M+ EL+P VE S++EAF D++ + + + + GR Sbjct: 69 LLVAPFRA--QAYESASADLMALFRELTPLVEPGSMEEAFLDVSAL-DGGSVEEAGRLAG 125 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+RA + L V G+A+ K AKLA+ AK G+V + + E + ++ LPV Sbjct: 126 ELRARAHRELGLPVSCGVARAKLFAKLASRRAKP-----DGLV-VVDAETEARVRPRLPV 179 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D+WG+G + KL G+ V DLA + + ++ER V + + + + + Sbjct: 180 ADLWGVGPMTTDKLHDAGVVLVADLAGWTV-------DGLVERRVAKAMAKNLIAIRDGV 232 Query: 242 -------PTKQEIICS-RSFGERITDYPSMRQAICSYAARAAEKLRSEHQ-------YCR 286 PT ++ I S RS G ++++A+ RA +L + + + R Sbjct: 233 DDATIKLPTARKSISSQRSLGRSTRQRSTVQEALRDNVIRALNRLGDDPRPATRLDVHLR 292 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD--AIWQAGHRYQKAG 344 + P AL E PT+D +I AA +L+ A + G G Sbjct: 293 YDDDHAVVVPGALGE-------------PTRDPATLIGAALAALERTAYEEDGRGVTMVG 339 Query: 345 VMLG 348 V G Sbjct: 340 VTFG 343 >UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q2KZS3_BORA1 Length = 360 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 161/364 (44%), Gaps = 27/364 (7%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E RP+L G+PVVV + V A + EA+ GV + + L Sbjct: 12 DMDAFYASVEQRDRPELRGQPVVVAWTGARSVVCAASYEARRFGVHSAMAVSRAQRL--- 68 Query: 65 C-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTDFGRE 122 C V ++ Y +S +V + +E S+DEA+ D+T + T Sbjct: 69 CPDAVYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVTVNKLGLPSATAVAEA 128 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IRA + + T LT G+A K LAK+A+ W + G V + + + LPV Sbjct: 129 IRAQIQRETGLTASAGVAPNKFLAKIAS----DWNKPDGLFV--LRPAKVLEFLQPLPVR 182 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 V G+GR +L+++GI TV DLA + HF R RG L E P Sbjct: 183 KVPGVGRVTQARLESLGIHTVGDLATCAPAELEHHFGRHGLRLHELARG---LDEREVQP 239 Query: 243 TK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + Q++ +F ER + +A+ AAR E+ R + Q R +KT F L Sbjct: 240 DQPLQQVSAENTF-ERDLRLADLGEALDRLAARVWEQARKKGQLGRTAVLKLKTDRFRL- 297 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDFF--SQGVAQ 357 + S+ L P + ++ A R + H RY+ AGV + +F +Q Q Sbjct: 298 -----LTRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNFTDPAQSARQ 352 Query: 358 LNLF 361 +LF Sbjct: 353 PDLF 356 >UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIB1_KYTSD Length = 407 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 13/223 (5%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS V RP+L G+PV+V + V++ EA+A GV+ P + + L + Sbjct: 15 VDMDAFYASVALVDRPELRGQPVIVGGGHRSVVLSATYEARAFGVRSAMPMARARRLCPQ 74 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGREI 123 VV ++E YA +S VM +++ V+ S+DEAF D+TG R I Sbjct: 75 ATVV--RPDHERYAAVSAAVMEIFRQVTHAVQPTSVDEAFLDVTGTSRRWGSPLQVAEWI 132 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 R TV H+T VGI +AK+A+ AK G ++ E + L V Sbjct: 133 RRTVAAEQHITCSVGIGPNPFVAKVASGQAKP-----DGTRQVTPAE-VVSFLHPLDVGV 186 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDI----RFIRKHFNVVL 222 +WG+G + ++L G+ TV +A T + R + H L Sbjct: 187 LWGVGEKTQEQLARFGLTTVAQVAHTPVVTLQRIVGDHAGAAL 229 >UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class) RepID=C1A1E2_RHOE4 Length = 432 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 108/402 (26%), Positives = 174/402 (43%), Gaps = 46/402 (11%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D+++FYAS E P L G+PV+V G V+A + EAKA GV+ + + L + Sbjct: 41 ADLDSFYASVEQRDDPTLAGRPVIV---GGGVVLAASYEAKAFGVRTAMSGGQARSLCPQ 97 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGREI 123 VV Y+ S V + SP VE SIDEAF ++ G+ + + G + Sbjct: 98 AIVV--PPRMSAYSQASKDVFDVFHDTSPLVEGISIDEAFLEVGGLAKIVGNPLQIGANL 155 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 R V ++ L + VGIA+TK LAK+A+ AK G++ + E + + + LPV+ Sbjct: 156 RRDVAEQVGLPITVGIARTKFLAKVASAFAKP-----DGLLRVPP-EGETEFLHPLPVEK 209 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFI--------RKHFNVVLE----RTVRELRG 231 +WG+G+ + KL I TV D+A D I +H + R VR RG Sbjct: 210 LWGVGKITAHKLRNFDIVTVGDIARHDESSIVSILGGGAGRHLYALSHNRDPRPVRAYRG 269 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + + + G + ++ S R + ++RS + R ++ Sbjct: 270 ------------RSSMGAQHALGRGSHSRAELDASLMSLVDRVSRRMRSAQRTGRTVTLR 317 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ--AGHRYQKAGVMLGD 349 ++ + F + S L T D+ +++NA+ LD A GV + + Sbjct: 318 LRFADFTR------ATRSHTLRRSTADTAELLNASMVLLDEAVPMIADKGITLIGVAVSN 371 Query: 350 FFSQGVAQLNL-FDDNA-PRPGSEQLMTVMDTLNAKEGRGTL 389 G QL L FD P + L + MD++ K G L Sbjct: 372 LDRDGAEQLELPFDGPGFAGPDTVALDSAMDSVRKKFGSAAL 413 >UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0B0_9FIRM Length = 406 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 91/411 (22%), Positives = 181/411 (44%), Gaps = 29/411 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQKDL 61 CD+N+++ S E + P+L PV V N G ++A+N AK G+K G+ + K+ Sbjct: 10 CDMNSYFVSVELLKHPELKDLPVAVAGNPKNRHGIILAKNEIAKKYGIKTGETIWAAKN- 68 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 +C + S +Y+ Y S R+E +S+DE++ D+TG ++ + Sbjct: 69 --KCKDLELLSPHYDEYIKYHKLFNDIFYRYSDRIEKFSVDESWIDVTGSIKLFGTGKEI 126 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +IR V + +T+ G++ K AK+ + K V+ N ++++ L Sbjct: 127 ADKIRGEVREELGITLSAGVSFNKVFAKMGSEYKKP---DATTVISRDNY---KEVLWPL 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + + +G+ +K L++ GI T+ DLA + + ++ V + + G+ +++ Sbjct: 181 PVSEFFMVGKITAKLLNSYGIYTIKDLAAAEPQILKAELGVKIYELIDSANGKSSDEVKY 240 Query: 240 FAPTKQ--EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + I ++F E + +++ + + A++LRS + + + IK S F Sbjct: 241 YKDNEDPMSIGHGKTFKEDLVTSTQVKKEVWGLSEMVAKRLRSHNLFAAGVKVVIKDSDF 300 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQK---AGVMLGDFFSQG 354 S KL PT + I A + A W + + G+ L Sbjct: 301 K------SYSRQKKLRLPTDVTGHIAEEAFSLIKASWDFSKKLRAMSITGIDLRPDCKDI 354 Query: 355 VAQLNLFDDNAPRPGSE-QLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKR 404 +Q ++F E ++ VMD + K G ++ G G++ Q ++ + Sbjct: 355 GSQYSIFSQGEQEGIKEREVDKVMDEIKQKFGDQSI---GYGVKTQGEIDK 402 >UniRef50_C5CJ42 DNA-directed DNA polymerase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CJ42_KOSOT Length = 424 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 19/304 (6%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNN--DGCVIARNAEAKALGVKMGDPWFKQKD 60 A D++AF+AS E P L GKP++V + V++ + EAK GVK G P FK + Sbjct: 43 AHVDMDAFFASVEQASNPYLKGKPIIVTGKDTRHSVVVSASYEAKKYGVKAGMPAFKALE 102 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + V S Y +S +M LE +SPR + SIDEAF DL+ + D + Sbjct: 103 ICPKALFVPVDSGK--YTYVSEEIMKRLEFISPRYSVASIDEAFIDLSVYHSLSDSINAL 160 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + R ++ + ++ +G+A +AK+A+ + + G VV E+ + + Sbjct: 161 KLFRTSIEKTFGISFSIGVAVNPLIAKIAS----DFNKPRGFVVVKEGSEKA--FLQNVD 214 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF-----NVVLERTVRELRGEPCL 235 + V GIG KL+ G K +L + D F+ +F +V TV+ E Sbjct: 215 ISQVPGIGPHTLMKLENFGFKKASELLEADEFFLYHNFGNSFLGLVKSLTVKNYPKELFF 274 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + E P K + S + + + + A+A ++R R S F+K S Sbjct: 275 KKE---PPKS-VGHSMTLNHDVNSIELIERVASFLGAKAVYRMRKYGYQARGTSLFLKYS 330 Query: 296 PFAL 299 F++ Sbjct: 331 DFSV 334 >UniRef50_A9A3A9 DNA polymerase IV n=6 Tax=Thaumarchaeota RepID=DPO4_NITMS Length = 364 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 16/222 (7%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNND-----GCVIARNAEAKALGVKMGDPW-FKQK 59 D + FYA CE + P+L KPV V +D G + N A+ G K G P F +K Sbjct: 10 DFDYFYAQCEEIRSPELKSKPVCVCVFSDRGGDSGAIATANYTARKYGAKSGIPIVFAKK 69 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL--- 116 L R V +++ Y++MS + M +EE S E DEA+ D+T R D Sbjct: 70 RLEERKDAVFLPVDFDYYSEMSEKAMKIMEEFSDVFEYVGRDEAYLDVTK-RTEGDFHKA 128 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + ++I+ ++ ++T L+ +GI+ K ++K+A+ +Q+ G + + + E+ + Sbjct: 129 SHLAQQIKNSIREKTKLSCSIGISPNKLISKIASD----FQKPDG--LTIVSPEKVEGFL 182 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF 218 +L + D+ GIG++ ++ M ++T+ D+ D+ + K F Sbjct: 183 ESLKIRDIPGIGKKTEQRFTEMNLETIGDVKRLDVFTLNKEF 224 >UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A0M5X6_GRAFK Length = 406 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 86/387 (22%), Positives = 166/387 (42%), Gaps = 32/387 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++ F+ S E P+L KPV+V D G V A + E + GV G P + L Sbjct: 10 LDLDTFFVSAERREHPELNKKPVIVGGLGDRGVVAACSYETRNFGVHSGMPMKVARQLCP 69 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREI 123 V+ N +Y S+ V + P E S+DE + DLTG+ + F +E+ Sbjct: 70 AATVI--KGNASIYTKFSHEVTEVIRSKVPSFEKASVDEFYADLTGMDRFFGINQFAKEL 127 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 + ++L+ T L + G++Q K ++K+A K + ++ ++D ++ ++ LPV+ Sbjct: 128 QQSILKETRLPISFGLSQNKIVSKIATGEGKPYAQK---IIDPGT---EKNFLAPLPVNK 181 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIR----KHFNVVLERTVRELRGEPCLQLEE 239 + +G + +KL +GI+ + + + + K+ + +R + P + E Sbjct: 182 IPMVGNKTFQKLLNLGIRRIETIQKMPVEVLESVLGKNGRTIWKRA-HGIDNPPIIPFHE 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ I R+F D + + + A A +LR ++ +S I+ S F Sbjct: 241 ----RKSISTERTFNRDTIDMVRLHATLVAMAESLAYQLRRGNKLTSNVSVRIRYSDFQT 296 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y A + T +I ++ + GV G Q+N Sbjct: 297 ----YSKQAKISY---TSADHILIPKVEELFKQLYSRRMLIRLIGVRFSGLVG-GHYQIN 348 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGR 386 LFDD SE+++++ ++++ + R Sbjct: 349 LFDD------SEEMLSLYNSMDKIKKR 369 >UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli RepID=Q38YP4_LACSS Length = 376 Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 78/328 (23%), Positives = 151/328 (46%), Gaps = 33/328 (10%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E +PDL KP+++ + G V N A+ GV K Sbjct: 20 IDMDAFYASIEEREQPDLRQKPLIIARDPSDTGGKGVVTTANYVARQYGVHSAMSAQKAA 79 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT----GVRNCRD 115 +L + V + N+ LY +S ++ ++ ++E + DEA+ D+T G+ + + Sbjct: 80 ELIPKHQAVFKTPNFPLYQSVSAQIHDIFHTVTDKIEPIAFDEAYLDVTENKLGLTHTIE 139 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 + + ++ +L+ T L GI+ K LAK+A+ +++ G + L E+ Sbjct: 140 VVAY---LQKAILEETQLVSSAGISYNKFLAKMAS----DYRKPAGRTLVLP--EQAIAF 190 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV---LERTVRELRGE 232 +S LP++ G+G++ K+ +GI T DL F+ +HF + L R VR + Sbjct: 191 LSRLPIEKFRGVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNR 250 Query: 233 PCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFI 292 P E+ ++ I ++G+ + ++ + S A A++LR ++ + + Sbjct: 251 PV----EYQRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGLTVVLKV 306 Query: 293 KTSPF-------ALNEPYYGNSASVKLL 313 + + L E Y GN+A ++ + Sbjct: 307 RNRQYETITKRKTLGE-YVGNAAELEAI 333 >UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_TREDE Length = 395 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 28/214 (13%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQK 59 +F D++AF+AS E + P+ GKPV+V ++ G V + EA+ GV P + + Sbjct: 6 VFFHVDIDAFFASVEQLDNPEYMGKPVIVGGQSERGVVSTCSYEARKFGVHSAMPILQAR 65 Query: 60 DLFRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 L C F + Y + S VMS ++ +P ++ S+DEAF ++TG+ Sbjct: 66 KL---CPSGIFLRGRMDRYHEKSKEVMSIFKDFTPEIKQISVDEAFLNMTGMEKI----- 117 Query: 119 FGRE------IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK---WQRQTGGVVDLSNL 169 FG ++ T+ + T LTV VG AQ K +AK+A+ +K + + G +D Sbjct: 118 FGTPKNSALLLKKTIKEETGLTVSVGCAQNKYIAKIASGRSKPDGLFIVKAGEEID---- 173 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTV 203 M +LP+ DVWG+G + ++L A G+ +V Sbjct: 174 -----FMKSLPLKDVWGVGGKTRERLIAAGLTSV 202 >UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCD1 Length = 419 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 163/358 (45%), Gaps = 25/358 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D+++F+ S E + RP+L G+PV+V + G V++ + EA+ GV P + +L Sbjct: 28 LDMDSFFVSVELLSRPELVGRPVIVGGRSGRGVVVSASYEAREFGVHAAMPMGRAMNLCP 87 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFGRE 122 V+ S + LY+ S +V + +++P + S+DEA+ D++ VR + Sbjct: 88 FAEVIPPS--HGLYSSYSQKVFDLVAQVTPDFQQVSVDEAYIDVSAAVRRLGSPVRITSQ 145 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +RA + +T L+ VGIA ++ +AKLA+ AK + L L R+ + +P++ Sbjct: 146 LRAEIEAQTGLSASVGIAGSRVVAKLASTRAKPHGQL------LVPLSATREFLDPMPIE 199 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 + G+G + + GI+ + DLA D + + F R G ++ Sbjct: 200 ALPGVGEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQVK 259 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 + I +F E + D + + A + A ++R++ + + + + F Sbjct: 260 DRS-ISAEHTFNEDVWDLSQLEHELLRLADKVAHRVRADGKVATTLGLKYRLADFTT--- 315 Query: 303 YYGNSASVKLLTPTQDSRDIINA---ATRSLDAIWQAGHRY---QKAGVMLGDFFSQG 354 S S+ L PT +R+I A A R+L G R + AG+M DF + G Sbjct: 316 ---LSRSITLDAPTDLAREIYEALRPAMRNLREQKSKGVRLLGVRAAGLM--DFSASG 368 >UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=Veillonella RepID=D1BPW6_VEIPT Length = 500 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 109/204 (53%), Gaps = 16/204 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+AS E + P+ G PV+V LS+ G V + EA+ GV P + K L Sbjct: 3 VDMDAFFASIEQLDHPEYKGHPVIVGGLSSR-GVVATCSYEARKFGVHSAMPILRAKKL- 60 Query: 63 RRC--GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-F 119 C G+ + + Y ++SN++ S ++E +P +E SIDEAF +++G+ Sbjct: 61 --CPDGIYVYP-RMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKAL 117 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G+ I+ V ++T L + G+A K LAKLA+ K G+V + R++++++ L Sbjct: 118 GQAIKDRVFEKTGLIISAGLAPNKFLAKLASDLDK-----PDGLVVIP-YGREKEVLAPL 171 Query: 180 PVDDVWGIGRRISKKLDAMGIKTV 203 P+ +WG+G R K L A G + Sbjct: 172 PIKRIWGVGPRTEKILKAGGFHLI 195 >UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T119_9ZZZZ Length = 380 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 163/379 (43%), Gaps = 37/379 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYA+ E + PDL GK V+V + N G V + EA+ G+ P + Sbjct: 23 ADLDAFYAAVEVLDDPDLAGKAVMVGGDPENRGVVATASYEARVFGIHSAMP---MRTAV 79 Query: 63 RRC--GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 R C G++ ++ Y +S VM + + VE S+DEA+ D+T V R Sbjct: 80 RLCPHGIIIHP-RFDRYRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAVDAGRLPLAI 138 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 E++ V + LT+ VG +K++AK+A+ K G+V ++ E +R+ ++ L Sbjct: 139 ALELKNRVHENIGLTLSVGAGTSKSVAKIASDLHKP-----DGLVVVAPGE-EREFLAPL 192 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV----VLERTVRELRGEPCL 235 V +WGIG + ++L A GI+T+ DLA + ++ F V R + E R EP Sbjct: 193 AVGKLWGIGPKTGQRLRADGIETIGDLASQSTGWFQRRFGKRALDVQSRAMGEDR-EPVR 251 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E E + T YP + + A R A+ L + + ++ + + Sbjct: 252 TEREAKSVSAESTFATDLSGEGTLYPHLSR----LAGRVAQHLEGKQLKGKTVTVKARLA 307 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F + L PT I+ A R G ++ GV + F Sbjct: 308 DFTT------FTRQTTLPYPTGSDTVILETAWRLFSRELTPGRSFRLLGVGVSGFTEDEE 361 Query: 356 AQLNLFDDNAPRPGSEQLM 374 QL LF G EQ++ Sbjct: 362 FQLPLF-------GEEQMI 373 >UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacter RepID=Q1QAG3_PSYCK Length = 371 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/299 (28%), Positives = 139/299 (46%), Gaps = 18/299 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYAS E P+L GKP+VV N G V A + E + GV+ ++ + Sbjct: 25 IDMDAFYASVEQRDFPELRGKPLVVGGDPNGRGVVAAASYEVRKFGVRSAMSCYEAR--- 81 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTDFG 120 +RC V F +++Y +S + + L+P VE S+DEA+ D+TG+ + T Sbjct: 82 KRCPEVIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLDVTGLSVHQGSATLMA 141 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +RA +L +T L G++ K LAK+A+ K V+ ++ + +SALP Sbjct: 142 NWLRAQILGQTGLNASAGVSFNKMLAKIASDINKP---NGTAVITPADAD---AFISALP 195 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV--VLERTVRELRGEPCLQLE 238 ++ GIG+ +K+L AMG+ DL T + F + R E ++ E Sbjct: 196 IERFHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFGKRGQFYHDIAHGRDERAVKSE 255 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 T + + +F E +TD ++ I A A +L + I+ +K S F Sbjct: 256 R---THKSVGSETTFRENLTDDNELKIQIYEQNADAFSQLHKKQLIAYTITLKVKYSDF 311 >UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNT4_9FIRM Length = 403 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 12/205 (5%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AFYAS E P+ GKPV+V S+ G V + EA+A GV P K ++L Sbjct: 8 VDMDAFYASVEQRDHPEWRGKPVIVGGSSRRGVVATASYEARAFGVHSAMPAVKAREL-- 65 Query: 64 RCGVVCFS-SNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGR 121 C F +++Y +SN + + + +E S+DEAF D++G+ L GR Sbjct: 66 -CPDAVFVLPRFDVYKSVSNEIHEIMLHYAVEIEPLSLDEAFMDISGLCGKYETLGAVGR 124 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+A + ++T L GIA K LAKLA+ K + + +++++++ LPV Sbjct: 125 AIKAEIKEKTGLVASAGIAPNKFLAKLASDLDKP------DGLRIIPYGKEKEILAPLPV 178 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDL 206 +WG+G +KL G T+ D+ Sbjct: 179 RRLWGVGHVTERKLRNAGFLTIGDI 203 >UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE4_ANADF Length = 459 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 113/422 (26%), Positives = 175/422 (41%), Gaps = 56/422 (13%) Query: 6 DVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++ F+ S E + P L GKPVVV + G V A + E + LGVK G F+ R Sbjct: 22 DLDTFFVSVERLLDPTLEGKPVVVGGKPGSRGVVTAASYEVRRLGVKSGMSLFEAGK--R 79 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE- 122 + + +++Y + RV +P V + SIDE + D +G RE Sbjct: 80 APNAIYLPTRHDVYGTYAERVREIARRFAPTVRVASIDEMYLDFSGCERLYRSAGAAREN 139 Query: 123 ----------IRATVLQRT-------HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVD 165 I VLQ T L G+A +K +AK+A+ AK V Sbjct: 140 GAEDRAGDAIIEGAVLQLTTAIFDELGLPSSAGVATSKVVAKVASALAKPRG------VM 193 Query: 166 LSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLAD---TDIRFIRKHFNVVL 222 L +R +++ LPV GIG KL A G +T+ +A+ D++ I + + Sbjct: 194 LVPAGVERAVLAPLPVRSFPGIGPVAEAKLHAAGYQTLGAVAEASLADLQTIFGAWAASI 253 Query: 223 ERTVREL-RGEPCLQLEEFAPTKQE------IICSRSFGERITDYPSMRQAICSYAARAA 275 R V+ L G+ C + FA E I R+F E +TD S+ +C R Sbjct: 254 SRGVQGLGSGDLCRERPAFAEHDPEGETVGSISNERTFREDVTDPASIEAVLCGLCERVC 313 Query: 276 EKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAA-TRSLDAIW 334 + R H R ++ ++ + F + A+ L +++ AA TRSL Sbjct: 314 WRARRRHVKARTVTLKLRYADFHTLTRSHTTMATNSELELYPIVKEMFAAARTRSLP--- 370 Query: 335 QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA-G 393 + GV L + QL LFD N E++ V+D + A+ G + A G Sbjct: 371 -----IRLLGVQLSSLGT--FEQLPLFDRN------ERVGAVVDGIRARFGFAAVSLATG 417 Query: 394 QG 395 +G Sbjct: 418 RG 419 >UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PEH3_9FIRM Length = 415 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 100/400 (25%), Positives = 174/400 (43%), Gaps = 34/400 (8%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFKQKDLF 62 D +AFYAS E ++ P L G+PV V+ + + G V+A++ EAK GV+ GD ++ + Sbjct: 12 DCDAFYASVECLYNPALRGRPVAVVGDPELRHGIVLAKSQEAKLFGVQTGDALWQAR--- 68 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG- 120 ++C + F +++E Y S E S R E + +DE++ DLTG C +L G Sbjct: 69 QKCKEITFVPAHFEKYLSFSRMTKEIFSEYSDRCESFGLDESWIDLTG---CTELFGDGP 125 Query: 121 ---REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +IR + + +T VG++ K AKL + K V+ + Q + Sbjct: 126 AVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKP---DGMTVIAYDGFKEQ---VW 179 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV---LERTVRELRGEPC 234 LPV + +GR + KL + GI T+ LA I F+ F + L L P Sbjct: 180 PLPVKTLLYVGRATTGKLKSYGITTIGALAQAPITFLEHRFGKIGRMLWMFANGLDTSPV 239 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + K + + + ITD ++ + + + +LR C+ ++ I+ Sbjct: 240 SNIGAKSLIKSIGNSTTAPRDLITDQ-EIKITLYALCESISARLREHSFRCKTVALTIRD 298 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 S E + L P+ ++++ +AA + G + GV + Sbjct: 299 SSLTSFE------RQLALKRPSCITQELFDAAFSLYKQHHKCGLPVRSLGVRAANLMLID 352 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 QL++F D A E+L +D + + G +FA Q Sbjct: 353 CMQLSIFPDVARAQKQERLEETVDDIRRRFG----HFAVQ 388 >UniRef50_A9MHU5 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MHU5_SALAR Length = 86 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 47/64 (73%), Positives = 50/64 (78%) Query: 347 LGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAM 406 LG FFSQGV QLNLFDDNAPR GSE+LM V+D LNAKEGRG L G+GIQQQ MKR M Sbjct: 7 LGGFFSQGVVQLNLFDDNAPRAGSEKLMEVLDHLNAKEGRGILISLGEGIQQQLAMKRDM 66 Query: 407 LSPR 410 S R Sbjct: 67 RSSR 70 >UniRef50_B5Y6A2 DNA-directed DNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6A2_COPPD Length = 390 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 106/231 (45%), Gaps = 30/231 (12%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDG------CVIARNAEAKALGVKMGDPWFKQ 58 D++AF+ASCE P L GKP+ V+++ G + A + EAK GVK G P Sbjct: 7 VDMDAFFASCEQAINPKLKGKPIGVMADPYGRGKKRSVIAAASYEAKRKGVKAGMP---P 63 Query: 59 KDLFRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K+ F C ++ ++ Y + N+++ +S VE YSIDE F G +D Sbjct: 64 KEAFNLCPDLILVQAHPSFYGYVHNQMLKYARSISSEVENYSIDEFFMTYYG----KDPD 119 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK-----WQRQTGGVVDLSNLERQ 172 G EIR V ++ +T VGIA K LAK+A K W+ Q V Sbjct: 120 KVGEEIRRYVKKQFGITCSVGIAPGKILAKMATEEGKPDGLTWWKPQAIPSV-------- 171 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE 223 LPV + GIG R L+ GI T+ DLA T I+ ++ E Sbjct: 172 ---YKYLPVSAIPGIGSRREALLNKNGIYTLEDLALTPKPIIKNLMGILGE 219 >UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EN92_ACIF5 Length = 378 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 21/223 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+A+ E P+L G+PV+V + G V + EA+ G+ + + L Sbjct: 18 VDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAARARSL- 76 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-----GVRNCRDL 116 C F + Y + S +VM L +P VE S+DEAF D+T GV R Sbjct: 77 --CPQAVFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATADGVLAVR-- 132 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 REIRA + + T LT G++ K LAKLA+ +W++ G V E + Sbjct: 133 --IAREIRARIERETGLTASAGVSYNKLLAKLAS----EWRKPNGLFV--VPPEHGLAFL 184 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN 219 + LPV + G+G KKL AMGI TVLDL + + F Sbjct: 185 APLPVGKLHGVGPATVKKLSAMGIHTVLDLRNASREVLIAQFG 227 >UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8L2_NATTJ Length = 408 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 27/391 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AFYAS E P+L KPV++ + G V +A+ G+ P ++ + L Sbjct: 19 IDMDAFYASVEKRDNPELEDKPVIIGGSRRGVVSTCCYKARKYGLHSAMPMYRAQRLCPH 78 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFGREI 123 V + + Y +S + E +P VE S+DEAF D+TG N D + +I Sbjct: 79 G--VYLRPDMDKYRRVSQEIKKIFLEFTPLVEPLSLDEAFLDVTGSLNLFGDAVNIAEKI 136 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 + + + LT +G+A K +AK+A+ K G+ + +++ ++ LPVD Sbjct: 137 QTQISDQLQLTCSIGVATNKFIAKVASDLKK-----PAGLTHVPT-GKEQDFLAPLPVDK 190 Query: 184 VWGIGRRISKKLDAMGIKTVLDLAD-----TDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 +WG+G + + ++ + G T+ +L +I + K FN+ E T+ +G ++ Sbjct: 191 LWGVGEKTTARIKSRGYHTIGELQQMLAKAQNINSLAKSFNIT-EDTLLLAKGYDDREVV 249 Query: 239 EFAPTKQEIICSRSFGERIT---DYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 P K I ++F + +T Y + + ++ + +LR + ++ I+ S Sbjct: 250 PEEPPK-SIGQEKTFAQDLTAGSQYNQLIPHLLKFSEQVGARLRKAGYKGKTVTVKIRDS 308 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI-WQAGHRYQKAGVMLGDFFSQG 354 F K + T ++I A L + + + GV + + S Sbjct: 309 RFK-------TWTKQKTVPETDQDKEIYAHAQELLQNMNLKPSDEIRLLGVTVSNLVSST 361 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 QL+L N +QL +D + K G Sbjct: 362 QQQLSLDMSNEQYEKEQQLQWTLDEMREKFG 392 >UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus RepID=C7RGQ0_ANAPD Length = 345 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 171/364 (46%), Gaps = 31/364 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D +AFYASCE + P + P+ V LSN A N +A+ G+ P F K+L Sbjct: 7 VDCDAFYASCEELRNPKMKNHPLAVGGLSNKSILTTA-NYKAREFGLHSAMPVFIAKEL- 64 Query: 63 RRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 C ++ +++ Y S V S ++E + +E S+DEA+ L + + L R Sbjct: 65 --CPNLILLPVDHKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYL-LVETDSPKKL---AR 118 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP- 180 +++ VL++T + + +GI+ K LAKLA+ WQ+ G+ + R+ L LP Sbjct: 119 KLQEEVLRKTGIGISIGISYNKFLAKLAS----DWQK-PHGITQI----RKEDLDYFLPN 169 Query: 181 --VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 V+ V GIG++ S++L+ +GI V DL D ++ +F +RG ++ Sbjct: 170 ISVNKVHGIGKKTSERLNKIGIYKVEDLLKLDYEYLIDNFGKQGAYIYHVIRGVDDRKIN 229 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ I R+F + D + + + + +++ ++ + ++ IK + F Sbjct: 230 P-SRVRKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDIKNIQGKTVNLKIKDAKFK 288 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 ++ S+ L P ++DI N A L+ + + G + G+ L + + + QL Sbjct: 289 ------NHTRSITLQEPIYRAKDIYNEALSLLEDLHK-GEMLRLIGISLSNLQERKLNQL 341 Query: 359 NLFD 362 + D Sbjct: 342 SFLD 345 >UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomycetales RepID=C7QBJ0_CATAD Length = 834 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/214 (33%), Positives = 101/214 (47%), Gaps = 21/214 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AFYAS E + +P L GKPVVV N G V + EA+A GV R Sbjct: 15 VDLDAFYASVEQLHKPSLRGKPVVVGGIGNRGVVSTASYEARAFGVHSA---LATGIARR 71 Query: 64 RCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD---- 118 R + + Y S RVM+ + ELSP VE S+DEAF D++ + D T Sbjct: 72 RAPNAAYLIPRFGAYQAYSERVMALMHELSPLVEPLSLDEAFIDISHLFGSLDTTTPHNA 131 Query: 119 ------FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ 172 ++R + T LT VG +K +AK+A+ A K G+V + Q Sbjct: 132 TLEARRIAEDLRTRIKNETGLTASVGAGTSKLIAKIASDAEKP-----DGLVVIEPGTEQ 186 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDL 206 + LPV +WG+G +++L +G TV DL Sbjct: 187 -TWLDPLPVRALWGVGPATAERLRKIGATTVADL 219 >UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA41_MICLC Length = 431 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 98/370 (26%), Positives = 158/370 (42%), Gaps = 27/370 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+ S E +PDL G+P V + + V++ + A+A GV+ P + L Sbjct: 18 VDMDAFFLSVELREQPDLEGRPAAVAAPSGRSVVLSASYAARAYGVRSAMPLAHARAL-- 75 Query: 64 RCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGR 121 C +V +LY +S VM+ L +++P +E S+DEAF D+ G R G Sbjct: 76 -CPPLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVAGARRRLGPPEHIGH 134 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR V L VG + K +AK A+ AAK G++ + +R + LPV Sbjct: 135 LIRERVRSALGLPCTVGGSAVKFVAKTASTAAKP-----DGLL-IVPPQRTLDFLHPLPV 188 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +WG+G + +++L G+ T+ DLA D + F RG + A Sbjct: 189 GRLWGVGPKAAERLARRGVATIGDLARVDPARLEASFGAAGREWASLARG---IDPRPVA 245 Query: 242 --PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P + I +F D + + R A +LR+E ++ +K ++ Sbjct: 246 PRPAARSIGADHTFDVDPVDVVGVDPEVLRLCHRVAARLRAEQVTAGAVTVRLKAPDGSV 305 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGHRYQKAGV---MLGDFFSQGV 355 S + +L PT D++ A R + + + H + GV LGD Q Sbjct: 306 ------RSRTARLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERLGDEADQPP 359 Query: 356 AQLNLFDDNA 365 AQ LF A Sbjct: 360 AQEALFGGPA 369 >UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIK9_HALO1 Length = 409 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 12/206 (5%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++AF+AS E P L GKPV+V + + G V A + EA+ GV P R Sbjct: 11 VDLDAFFASVEQRDDPSLRGKPVLVGGSAERGVVAAASYEARRYGVHSAMPMAVA---LR 67 Query: 64 RCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGR 121 RC V + YA+ S + L+ SP VE S+DEAF DLTG R D + Sbjct: 68 RCPQAVVVRHSMGRYAEASRAFFAILDHFSPLVEPLSLDEAFLDLTGSERLLGDARTVAQ 127 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ V L V VG+A TK LAK+A+ K G+ + +R + LPV Sbjct: 128 TIKDRVRAELSLVVSVGVASTKFLAKIASDIDKP-----DGLC-VVEPDRVESFLHPLPV 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLA 207 +WG+G KL MG++T+ D+A Sbjct: 182 SRLWGVGAVTQDKLHQMGLRTIGDVA 207 >UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q0AWD6_SYNWW Length = 419 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 165/396 (41%), Gaps = 37/396 (9%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D+N FYAS E + RP++ K V V + G V+A+N AK G++ G+ ++ + Sbjct: 9 DLNNFYASVECLHRPEIRNKAVAVCGDPAARHGIVLAKNYLAKESGIQTGEVIWQAQ--- 65 Query: 63 RRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFG 120 ++C +V NY LY S S + +VE + +DEA+ D+TG + + Sbjct: 66 QKCPELVVVPPNYPLYLKFSRLARSIYASYTDQVEAFGLDEAWLDVTGSIHIFGSGIEMA 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EIR + ++ VG++ K AKL + K ++ N ++ LP Sbjct: 126 DEIRERIKLELGVSASVGVSYNKIFAKLGSDMKKP---DATTIISKDNF---KQTAWPLP 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKH---FNVVLERTVRELRGEPCLQL 237 D+ +GR +K GI T+ D+A++D ++ + VL P + + Sbjct: 180 ASDLLYVGRATCRKFARWGISTIGDIAESDPLVLKARLGKWGEVLWSFANGYDRSPVVAM 239 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQ------AICSYAARAAEKLRSEHQYCRFISTF 291 E + II +S G IT + I + + A +LR CR + Sbjct: 240 GE-----ESII--KSVGNSITTPRDLENNEDVLLIIYALSESVAARLREHGFKCRTVHIH 292 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 ++ ++ + KLL P S DI A + + H + GV D Sbjct: 293 VR------DKNLFTFGVQGKLLRPGNISNDIAEKAMALFRSHYSWAHPIRSIGVRGCDLI 346 Query: 352 -SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR 386 + QL+LF D R E++ +DTL + G Sbjct: 347 AADSHEQLSLFTDEEKRIKQEKIEATLDTLRCRFGH 382 >UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_HALHL Length = 356 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 136/302 (45%), Gaps = 24/302 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDP--WFKQKD 60 D++AFYAS E P L G+PVVV + + G V A + EA+A G++ P W + Sbjct: 9 IDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAWAR--- 65 Query: 61 LFRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 RRC F ++ Y +S ++ + + +E S+DEA+ D+TG + R T Sbjct: 66 --RRCPEAIFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRGSATH 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + IR + + T LT G++ K LAKLA+ K G+ + E ++A Sbjct: 124 MAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKP-----DGLYVVPP-EDGPAYVAA 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLAD---TDIRFIRKHFNVVLERTVRELRGEPCL 235 P+ + G+G + +L+ +GI+ V DL D D+ + L R + P Sbjct: 178 QPIRRLHGVGPATAARLERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVR 237 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +++ I R+FG+ D + Q + + A +L R ++ ++ + Sbjct: 238 PRR----SRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYA 293 Query: 296 PF 297 F Sbjct: 294 DF 295 >UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA62_9FIRM Length = 413 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 171/404 (42%), Gaps = 48/404 (11%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLS----------NNDGCVIARNAEAKALGVKMGDP 54 DVN+ + S + + + K V + S G V+A++ +AK GV+ G+ Sbjct: 12 IDVNSAFLSWQAAYNKKMGNKEVDLRSIPSAVGGDEAKRKGVVLAKSQKAKKYGVRTGES 71 Query: 55 WFKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC 113 F+ + ++C ++ N+++Y SN++ L E S +E YSIDE F D T + Sbjct: 72 LFEAR---KKCPNLLIVKPNFKIYRMYSNKLFDLLSEYSDTIERYSIDECFLDYTSSQKL 128 Query: 114 RDLTDFGR------EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS 167 FG EI+ + + TV +GI+ K LAK+A K + V+ L Sbjct: 129 -----FGEPIKAAYEIKERIKRELGFTVNIGISNNKLLAKMAGDLKKPDK-----VITLF 178 Query: 168 NLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVR 227 E + K++ L +++++ +GR+ +KL+++GIKT+ DL + F+ +F + Sbjct: 179 PEEIEEKML-PLTINELFMVGRKTKEKLNSLGIKTIGDLNKCSMGFLISNFKKAQGTMLY 237 Query: 228 ELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRF 287 E + + I S + TD +++ + + +LR + Sbjct: 238 NYSHGIDESEVEISRQTKSIGNSTTLKNDTTDINEVKKVFLALSDSVGTRLRRKDLKGNT 297 Query: 288 ISTFIKTSPFALNE-----PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQK 342 I+ IK + F PY+ NS + I A + + W + Sbjct: 298 ITVTIKNNLFHSYSHQRTLPYFTNSTNT-----------IYEQAFKLFNEFWN-NDAIRL 345 Query: 343 AGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR 386 G+ +G V QL+L ++ +++ VMD L G+ Sbjct: 346 LGISVGGLNKDEVNQLSLIEEKIENEKMKKIEEVMDKLRDNYGQ 389 >UniRef50_D1J7R2 DNA-damage repair protein MucB n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J7R2_MYCHP Length = 418 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 96/393 (24%), Positives = 186/393 (47%), Gaps = 34/393 (8%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI-ARNAEAKALGVKMGDPWFKQKDLFRR 64 D+++F+ SCE +L KPVV+ +I A + E K LG ++G + L + Sbjct: 9 DMDSFFVSCERSINTNLIDKPVVIAKRYKRSIISAMSYEVKNLGYRVGSSLYTV--LEKV 66 Query: 65 CGVVCFSSNYELYADMSNRVMSTLE-ELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFGRE 122 ++ +Y+LY+ +S ++ L+ + ++EIYSIDE + D + V N + + ++ Sbjct: 67 PNLLIVEPHYDLYSLISKKIFDYLKNKYCTQLEIYSIDECYIDFSNTVSNWEEAKNLAQQ 126 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+ +L+ + +GI+ TK LAK++ + AK G++ + +R S LPV+ Sbjct: 127 IKDDILKTFMIPCSIGISFTKFLAKMSTNKAK-----PSGILITKKEDIERNFYS-LPVE 180 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIR-FIRKHFNVVLERTVRELRG----EPCLQL 237 ++G+G+ IS++L I T DL + + F+RK F + +L+G + L L Sbjct: 181 KIFGVGKNISQQLIKNKISTYKDLLECNNEIFLRKLFKKNFFLFIEQLKGINATDHILNL 240 Query: 238 EEFAPTKQEIICSRSFGERIT-DYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E + I + +F E+ + D ++ + A A + + + CR + I+ Sbjct: 241 ET-----KGISNTITFMEKDSDDIVFLKNELFKLARNVANRAVNNNYECRCVEVLIRKQ- 294 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QG 354 ++ + + T D I A + +W + G+ + D S Q Sbjct: 295 ---DKKWMSEQKKIDFFTNDIDI--IFKIALKLFLNLWNEKECLRGLGIRICDLRSIFQE 349 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAK-EGR 386 Q++LF+DN + + ++++ +NAK EG+ Sbjct: 350 NKQIDLFEDNNQKSI---VNSILNEVNAKFEGK 379 >UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidetes RepID=C6W6Q9_DYAFD Length = 416 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 98/397 (24%), Positives = 170/397 (42%), Gaps = 34/397 (8%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++ F+ S E L KP++V D G V A + E + GV G P + L Sbjct: 16 DLDTFFVSVERKQDSRLQNKPILVGGTGDRGVVAACSYETRQFGVHSGMPMKMARMLCPE 75 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIR 124 V+ N E Y+ S V + + P E SIDE + DL+G+ + ++R Sbjct: 76 ATVI--RGNGETYSKHSKEVSEIISQHVPVFEKASIDEFYADLSGMDKYFNCYGMASDLR 133 Query: 125 ATVLQRTHLTVGVGIAQTKTLAKLANHAAK---KWQRQTGGVVDLSNLERQRKLMSALPV 181 +++ T L + G+A K ++K+A AK + + + G ++ ++ + V Sbjct: 134 QRIIRETGLPISFGLATNKLVSKVATGEAKPNNQLRVEPGA---------EKTFLAPMEV 184 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPCLQLE 238 + +G ++++ L+ +GI+ V + + + + K F V L L P + Sbjct: 185 QKIPMVGDKMNQTLNNLGIRYVKTIQEMPMEMMGKVFGKNGVALWNRANGLDNSPIVPFH 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E ++ I R+FG+ D MR+ + + A A +LR+ + +S I+ S F Sbjct: 245 E----RKSISSERTFGKDTGDVRKMREMVRAMAETLAFQLRTGDKLTSCVSVKIRYSDF- 299 Query: 299 LNEPYYGNSASVKL-LTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 N+ S +L + T +I R D ++ + GV D + G Q Sbjct: 300 -------NTFSKQLKIAYTSADHVLIPHIERLFDQLYNRRMMVRLVGVSFSDLVT-GNYQ 351 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNA--KEGRGTLYFA 392 +NLFDD R Q M + T A K+G L +A Sbjct: 352 INLFDDTEERLNLYQAMDYIKTKYAYNKDGDQILTWA 388 >UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_STRCO Length = 479 Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 164/381 (43%), Gaps = 35/381 (9%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIAR-NAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+AS E +P L GK VVV V+A + EA+ GV P + + L Sbjct: 11 DMDAFFASVEQASKPSLRGKAVVVGGLGPRGVVATCSYEARVFGVHSAMPMGQARRLAPH 70 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD---FGR 121 + +ELY +S +VM L ELSP VE S+DEAF DL RD G Sbjct: 71 AAYLV--PRFELYRSISEQVMRLLRELSPLVEPLSLDEAFVDLDAGGAARDAETARLAGT 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++R + T LT VG+A +K LAK+A+ AAK G+V L +R ++ + V Sbjct: 129 KLRTDIRTVTGLTGSVGLAASKMLAKIASEAAKP-----DGLV-LIPPGTERAMLEPMTV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLA----DTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 + G+G L GI TV ++A D +R + K L P + Sbjct: 183 RTLPGVGPATGDHLRRAGITTVGEIAEAGEDELVRLLGKAHGHALYAMALARDERPVVAE 242 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E + + ++ I D + + A R +LR+ R I ++ F Sbjct: 243 RE----TKSVSVEDTYDVDIHDRVRVGVEVGRLADRCVRRLRASGLSGRTIVLKVRRYDF 298 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI-WQAGHRYQKAGVM-LGDF----- 350 + + S L PT D + AA R LD++ G R GV L D+ Sbjct: 299 ST------LTRSETLRGPTDDPAVVREAAARLLDSVDTTGGVRLLGVGVSGLADYTQEDL 352 Query: 351 FSQGVAQLNLFDDNAPRPGSE 371 F+Q A + ++ A PG+E Sbjct: 353 FAQ--AAGDRAEEPAEEPGTE 371 >UniRef50_A0QHM7 DNA polymerase IV 1 n=8 Tax=Corynebacterineae RepID=A0QHM7_MYCA1 Length = 458 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 137/299 (45%), Gaps = 20/299 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQKDLFR 63 D++AF+AS E + RP L G+PV+V V+A + EA+ G + P + K L Sbjct: 4 LDMDAFFASVEQLTRPTLRGRPVLVGGLGGRGVVAGASYEARVFGARSAMPMHQAKRLVG 63 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCD---LTGVRNCRDLTDFG 120 VV +Y S RV T+ + P VE S DE F + L G D+ F Sbjct: 64 VSAVVLPPRGV-VYGVASRRVFDTIRAVVPVVEQLSFDEGFGEPAQLAGA-PAEDVEAFC 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R V ++T L VG K +AK+A+ AK GV + E +R+L+ LP Sbjct: 122 EQLRRRVREQTGLIASVGAGSGKQIAKIASGLAKP-----DGVRVVRRAE-ERELLGGLP 175 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLAD-TDIR---FIRKHFNVVLERTVRELRGEPCLQ 236 V +WGIG +KL +GI+T+ +LA TD + L R R + P + Sbjct: 176 VRRLWGIGPVAEEKLHRLGIETIGELAALTDAEAANILGATIGPALHRLARGIDDRPVAE 235 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E ++I +F +T +R+AI A A +L + + R ++ +K S Sbjct: 236 RAE----AKQISSESTFAADLTTLEQLREAIEPIAEHAHHRLLRDGRGARTVTVKLKKS 290 >UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW5_9BACT Length = 387 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 12/204 (5%) Query: 6 DVNAFYASCETVFRPDLWGKPVVV-LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 D++AF+A+ E P+L GKPV V G V + EA+ GV + K +R Sbjct: 25 DMDAFFAAVEQRDNPELRGKPVAVGFDGPRGVVSTASYEARKYGVHSAQSIAQAK---QR 81 Query: 65 C-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDFGRE 122 C ++ ++ YA +S+++ +E + +E SIDEAF D+T + +L D +E Sbjct: 82 CPNLIIVPCRHDYYAKISHQIHQIFQEYTDLIEPISIDEAFLDVTQNKKGIELAVDIAKE 141 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+ + + T LT GI+ K LAK+A+ R+ G+ + + ++ ++ LP++ Sbjct: 142 IKTRIKEATGLTASAGISYCKFLAKVASD-----YRKPDGICTI-HPDKAYDFIAQLPIE 195 Query: 183 DVWGIGRRISKKLDAMGIKTVLDL 206 D WG+G++ +K+ MGI DL Sbjct: 196 DFWGVGKKTLQKMHFMGIFNGADL 219 >UniRef50_Q3BNM7 ImpB/MucB/SamB family protein (N-terminal) n=8 Tax=Bacteria RepID=Q3BNM7_XANC5 Length = 98 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 1/84 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D + FYASCE VF+PDL +P+VVLSNNDGC IAR+ EAKALGV MG P K Sbjct: 1 MFALIDGSNFYASCELVFQPDLRDRPLVVLSNNDGCAIARSDEAKALGVTMGQPIHKVPS 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRV 84 RR + S+N+ LY D+++R+ Sbjct: 61 QIRR-RLTLRSANFGLYGDIASRI 83 >UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E013_METI4 Length = 365 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 27/328 (8%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFK 57 +F D++AFY S E + P+ P+ V + N G ++ + EA+ GVK G P Sbjct: 26 LFFFVDLDAFYVSVERLRHPEYREMPMAVYTGSLNGRGVIMTASYEARKYGVKSGMPI-- 83 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 ++ L+ G++ +++ LY + SN V S L+ S R+E SIDE + V + D Sbjct: 84 RQALYHCPGIMLVAAHPSLYEEYSNSVYSLLKRFSERIERVSIDE---NCLVVPSSIDPE 140 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 I+A + + L +G+ K +AK+A AK + + ++ ++ Sbjct: 141 TTATAIQAAIGAKIGLPSSIGVGSNKLIAKMACDLAKPQG------IRVIPPGYEKAFLA 194 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF---NVVLERTVRELRGEPC 234 LPV+ + G+G K AMGI T+ DL+ D + +R+ F + + P Sbjct: 195 PLPVEKIPGVGPATLKIFHAMGIVTIDDLSKVDEQTLREKFGKRGAYFYNAAQGIDKSP- 253 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 LQLE T + + +F I ++ +++ + S + A+ LR E + + ++ Sbjct: 254 LQLER---TPRSLSREITFDRDIKNFSILQRVLVSLSRDLADSLRKEKLVAKTVFLKLRY 310 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDI 322 S F+ N + L +PT D +I Sbjct: 311 SDFSTNLRQFS------LSSPTDDPTEI 332 >UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKI6_9BACT Length = 361 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 14/216 (6%) Query: 6 DVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++ FYA+ E P+L G+PV V S+ G + N EA+A G+ P ++ + Sbjct: 18 DMDCFYAAIEVRDHPELRGEPVAVGGRSSRRGVLTTCNYEARAFGIHSAMPTYQA---MQ 74 Query: 64 RC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 RC ++ +E+Y + S R+ + + + +E S+DEA+ D++ + R + E Sbjct: 75 RCPHLIIKPVRFEVYKNESRRIRAIFADYTSAIEPLSLDEAYLDVSHLD--RPASAIALE 132 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IR + Q T L GIA K LAK+A+ W R+ G +++ ++ M LPV Sbjct: 133 IRKRIRQTTGLNASAGIAPNKMLAKIAS----DW-RKPNGQYEITP-DQIADFMRELPVS 186 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF 218 +WG+G++ + +L ++ I T DL ++KHF Sbjct: 187 KIWGVGKKSAARLASLDIATCGDLQQKTRLELQKHF 222 >UniRef50_A1SN18 DNA-directed DNA polymerase n=13 Tax=Actinomycetales RepID=A1SN18_NOCSJ Length = 362 Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 154/358 (43%), Gaps = 34/358 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND----GCVIARNAEAKALGVKMGDPWFKQKD 60 D++ F A+ E + RP+L G+PVVV D G V + EA+A GV G P + Sbjct: 13 VDLDQFIAAVEVLRRPELAGRPVVVGGRGDPTERGVVATASYEARAFGVGSGMP---LRV 69 Query: 61 LFRRCGVVCF-SSNYELYADMSNRVMSTLEELS----PRV-EIYSIDEAFC----DLTGV 110 R+C F + E Y S +VM+TL L P V E+ DEAF D + Sbjct: 70 AARKCPDAVFLPVDKEAYDAASAQVMTTLRGLEWGGVPVVLEVLGWDEAFLAAGEDHGEL 129 Query: 111 RNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 N R+ F +RA VL T L VGI K AK+A K GV L+ + Sbjct: 130 GNPRE---FAEHLRAEVLAETRLHCSVGIGDNKLRAKIATDFGKP-----RGVWQLTEAD 181 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL- 229 +M P +WGIG R +KKL A+GI TV LA +D R + + L Sbjct: 182 -WFPVMGERPTTALWGIGARTAKKLSALGIDTVEQLARSDARVLAAELGPTMGPWFHRLG 240 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 RG ++ + ++ E + D+ + + + + R + + E + + Sbjct: 241 RGVDTSPVDATPWVPRAHGREETYQEDLEDWDRVTEEVRALTRRVVDDIDREGRPAARVG 300 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVML 347 ++ PF+ S S+ L P+ D + +AA L+ + + G + GV L Sbjct: 301 IKVRYRPFST------VSRSLTLPEPSNDPAVLEDAAVSLLERV-ERGRPVRLLGVRL 351 >UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5S0_SPHTD Length = 394 Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 172/387 (44%), Gaps = 35/387 (9%) Query: 15 ETVFRPDLWGKPVVVLSNNDGCVI--ARNAEAKALGVKMGDPWFKQKDLFRRCGVVCF-S 71 E + RP+L GKPV+V G + A + EA+A GV+ P + R C F Sbjct: 24 EILRRPELRGKPVIVGGRPGGRGVVAAASYEARAYGVRSAMPIAQA---VRLCPHGVFLP 80 Query: 72 SNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFGREIRATVLQR 130 ++ Y ++S R + LE SP VE+ S+DEA+ DL+ R+ + R I+ V + Sbjct: 81 GDHAYYRELSGRFRAILERFSPLVEMVSVDEAYLDLSHSERSVGPPLEAARAIKRQVREE 140 Query: 131 THLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRR 190 LTV +G+A ++ +AK+A+ K + L + ++ LPV+ + GIG + Sbjct: 141 LGLTVSLGVATSRLVAKIASDLDKPDG------LRLIEPGAEAVTLAPLPVERMPGIGPK 194 Query: 191 ISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG-EPCLQLEEFAPTKQEIIC 249 ++L +G+ T+ LA +R F + + RG +P E P K I Sbjct: 195 SVERLQRIGVTTLGGLARMPAAALRPIFGRRADEVIARARGIDPRPVNPEREPAKS-IGR 253 Query: 250 SRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSAS 309 R+FG+ +TD + +A+ A R LR E R ++ ++ S F G Sbjct: 254 ERTFGQDLTDRHEIERALYHLAERTGRDLRREGLQGRVVAVKLRYSDFE----TVGRQR- 308 Query: 310 VKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG---DFFSQGVAQLNLFDDNAP 366 +L PT D ++I A +D + + Q +LG QL +F D+ Sbjct: 309 -RLPRPTDDHQEIAEVA---MDLVARLLEERQAPVRLLGVRVAGLGPAAIQLTMFGDDPL 364 Query: 367 RPGSEQLMTVMDTLNAKEGRGTLYFAG 393 R +L +D L A+ Y AG Sbjct: 365 R--RHRLNHALDDLAAR------YHAG 383 >UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJE1_DESAH Length = 384 Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 165/373 (44%), Gaps = 33/373 (8%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNA-EAKALGVKMGDPWFKQK 59 M D++AF+A+ E P+ G+P+VV N+ V+A + EA+ G+ P F Sbjct: 1 MILHMDMDAFFAAIEQRDHPETAGRPLVVGGNSKRSVVATASYEARRFGIHSAMPMFMAL 60 Query: 60 DLFRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 D +C ++ + YA +S ++M+ L E +P VE SIDEAF D+TG C L Sbjct: 61 D---KCSHLIVIPPDKSKYAAVSGQIMTLLNEFTPLVEQVSIDEAFLDITG---CERL-- 112 Query: 119 FGR------EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ 172 FG I+ + Q T LT +G + K LAK+A+ K G+ + + Sbjct: 113 FGSVEKICVAIKDRIKQETGLTCSIGASHLKFLAKIASDMNKP-----DGIHIIKRTDTP 167 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGE 232 +++ L + V G+G R ++ +GI T+ D++ + K F + RG Sbjct: 168 -EVIQTLAIKKVPGVGERAMDQMKQLGIITLGDISRIPHPILEKKFGKFATDLLNFSRGI 226 Query: 233 PCLQLEEFAPTKQEIICSRSFGERIT-DYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + P K I S S E T D M++ + ++A R +LR+++ I+ Sbjct: 227 DPSIIGTSGPIKS--ISSESTLENDTLDMVVMKKHLLAHAQRVGRQLRAKNLLATNITIK 284 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 +K S F + KL+ P S I A + + + + GV + F Sbjct: 285 LKFSDFT------QITRQTKLMVPICASTAIYREACTLFEQTAKT-RKIRLLGVGVSSFS 337 Query: 352 S-QGVAQLNLFDD 363 + QL LFD+ Sbjct: 338 TPDAPVQLELFDN 350 >UniRef50_A9NFG9 DNA polymerase IV n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFG9_ACHLI Length = 383 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 17/210 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV---LSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+NAFYA+C + P L + VV S G V + +A+ G+ G + Sbjct: 25 IDLNAFYATCAMIKEPHLKHRVFVVGGQSSQPRGVVSTASYKARKYGIHAGMSMLDALNK 84 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 F R +V +++ Y +MSN+ M L+ S V SIDEAF D+T + Sbjct: 85 FPRLLIV--PVDFKFYREMSNKFMEVLDAYSDLVLQASIDEAFLDMTKASEEIHPIKLAK 142 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR---KLMSA 178 +I+ ++ + L +GIA T LAK+A+ K G+ L R+R KL+ Sbjct: 143 KIQKELVDKYQLPTSIGIAPTLFLAKMASDMKKPL-----GITVL----RKRDVEKLLYP 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLAD 208 L V D++GIG++ KL A+GI T+ D D Sbjct: 194 LSVTDIYGIGKQTYPKLMALGINTIKDFMD 223 >UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKS4_METHJ Length = 368 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 152/336 (45%), Gaps = 24/336 (7%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSN-----NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D+++FYAS E PDL GKPVV+ ++ G V + EA+A G+ P + Sbjct: 22 DMDSFYASVEIRNNPDLSGKPVVIGADPMQGTGRGVVSTCSYEARAFGIHSAMPISQAYH 81 Query: 61 LFRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 L C F + YA +S +M L ++ +E SIDEA+ DL+ R+ Sbjct: 82 L---CPHAIFIPPHMATYAQVSATIMQILRGIAGEIEQVSIDEAYLDLSCDRSYELAAHH 138 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG-GVVDLSNLERQRKLMSA 178 I+ + + LT VG+A ++ AK+A+ + Q+ G VV LE + Sbjct: 139 AANIKQVIRNQVGLTCSVGLAPSRIYAKMAS----EQQKPDGLTVVSPDTLE---SFLKP 191 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + GIG++ ++ L G++T+ D+A DI+ ++ F R + RG+ L Sbjct: 192 LPVGKIPGIGKKSAQVLINAGLQTIGDIARCDIQTLQDMFGSHAVRLHQIARGQDREGLR 251 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E + ++ I +F T + ++ + +L ++ Y R I I+ + F Sbjct: 252 E-SGKRRSISREHTFLRDSTSPDEILGSLHTMILSLCHELEEQNIYSRTIGIRIRYTGFI 310 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW 334 + SV L+ PT++ R I A +W Sbjct: 311 T------RTKSVTLMQPTREVRVIECAIDGLFTEMW 340 >UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAM5_9FIRM Length = 425 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 157/365 (43%), Gaps = 34/365 (9%) Query: 35 GCVIARNAEAKALGVKMGDPWFKQKDLFRRC-GVVCFSSNYELYADMSNRVMSTLEELSP 93 G + A++ AK G+ G+P + R+C ++ +Y LYA S +M L + +P Sbjct: 49 GIITAKSIPAKRYGIVTGEPVSQA---LRKCPSLILVPGDYSLYARQSQALMDLLRKYAP 105 Query: 94 RVEIYSIDEAFCDLTGVRNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHA 152 V+ +SIDEAFCD+TG + D F +++ + + TV VGI+ LAK+A+ Sbjct: 106 AVDPFSIDEAFCDMTGTASLYGDPVLFAHKLKDEIRRDLGFTVNVGISSNHLLAKMASDF 165 Query: 153 AKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIR 212 K + T L E RK M LP D+ +G ++KL ++GI T+ DLA T Sbjct: 166 TKPDRVHT-----LWPREIPRK-MWPLPAADLLFVGESTAQKLKSLGILTIGDLAGTPED 219 Query: 213 FIRKHFNVVLERTVRELRG-EPCLQLEEFAPTKQEIICSRSFGERIT------DYPSMRQ 265 + HF + + G EP + ++ SR F IT D R Sbjct: 220 LLVSHFGKHGSQMLAYANGTEPS----DLTSRHRK---SRGFSNEITISHDLVDREEARL 272 Query: 266 AICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINA 325 + S A ++R + R + + K S F S +L + ++ I Sbjct: 273 ILLSLCETLAARIRLQGDKIRLVGVYYKDSSFV------SASRQTRLNRSSSSTQTIYET 326 Query: 326 ATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKE 384 A L +W G + GV + G Q++LFD R +QL +D + K Sbjct: 327 ALSLLHELWD-GRPLRLLGVRGSEIDKDSGSYQMDLFDAGKNR-KLDQLDAAVDQIRDKF 384 Query: 385 GRGTL 389 G ++ Sbjct: 385 GDSSI 389 >UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteria RepID=DPO41_AGRT5 Length = 405 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/390 (24%), Positives = 163/390 (41%), Gaps = 19/390 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E P+L KPV+V G V A+ GV+ P FK Sbjct: 23 IAHIDCDAFYASVEKRDNPELADKPVIVGGGKRGVVSTACYIARIHGVRSAMPMFKA--- 79 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 C V + E Y+ + + + ++EL+P V+ SIDEAF DL+G D Sbjct: 80 LEACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHH--DPP 137 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + A R VGV ++ + K A Q+ G + ++A P Sbjct: 138 ARVLAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRG--FSVVGEAEALSFLAARP 195 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +WG+G+ + L+A GI+ + L + + + + + V+ +R R RG + Sbjct: 196 VTTIWGVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNN 255 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P K + +F I+ + + + S + + A +L+ + + +KT+ F Sbjct: 256 DPVKS-VSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQTVVLKMKTADFK-- 312 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ-LN 359 + + +L PTQ + I L+ G +++ G+ + D G+A + Sbjct: 313 ----SRTRNRRLDDPTQLADRIFRTGLALLEK-ETDGTKFRLIGIGVSDLRDAGLADPPD 367 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 L D A R MD L K G+G++ Sbjct: 368 LVDRQATR--RAAAEAAMDKLRDKFGKGSV 395 >UniRef50_A4YEC1 DNA polymerase IV n=18 Tax=Sulfolobaceae RepID=DPO4_METS5 Length = 349 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWFKQ 58 D + F+A E + P L GKPVVV + + G V N EA+ LG+K G P K Sbjct: 5 FVDFDYFFAQVEEILNPSLKGKPVVVCVYSGRTKDSGAVATSNYEARKLGIKAGMPIIKA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLT 117 K++ + V E+Y +S RVM+ + ++EI SIDEA+ D+T V++ + Sbjct: 65 KEIGKDA--VFLPMRKEVYQQVSRRVMNIISGYGDKLEIASIDEAYLDITRRVKDFDEAK 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + R+++A VL++ L V VGI K +AK+ A + G++ E + + Sbjct: 123 ELARKLKAEVLEKERLRVTVGIGPNKVVAKI---IADMNKPDGLGII---YPEEVKDFLY 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLAD 208 L + V G+G+ + L +GI + D+ + Sbjct: 177 NLDISKVPGVGKITEEILRKVGINRLGDVIN 207 >UniRef50_D2LRT2 DNA-directed DNA polymerase n=3 Tax=Bacillus RepID=D2LRT2_BACS4 Length = 424 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/401 (23%), Positives = 176/401 (43%), Gaps = 37/401 (9%) Query: 4 LC-DVNAFYASCETV-FRPDLWGKPVVVLSNN--DGCVI--ARNAEAKALGVKMGDPWFK 57 LC D+ +FYASC + D + V+ + +G VI A A + G+K G+ F Sbjct: 14 LCIDMKSFYASCAAIALGEDPLTSHLAVVGDTAREGSVILAATPALKRDFGIKTGNRLF- 72 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVR---- 111 ++ + + +++ Y +S +V + ++ P + YS+DE+F D+ G Sbjct: 73 --EVPKDSKIKLVNASMATYLSISVQVTALFQQYVPPEAIHTYSVDESFLDICGTEKIWG 130 Query: 112 NCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 N R+L +IR + +R L+ +GI ++K+ K Q G+ + + Sbjct: 131 NDRELA---LKIRDDLFKRFGLSCAIGIGPNMLMSKVCLDIEAK--NQPSGIAKWTYADV 185 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + KL P+ +WGIG +I +L +GI ++ LA+ + + K F V+ + G Sbjct: 186 KTKLWQISPLQKMWGIGSKIEARLHRLGIFSIGHLANYRLDKLEKVFGVMGNQLYYHAWG 245 Query: 232 EPCLQLEEFAPTKQEIICSR-SFGER------ITDYPSMRQAICSYAARAAEKLRSEHQY 284 +F+ I+ + S+G+ TD +++ I A + R E++ Sbjct: 246 ------IDFSEVGAPILNGQISYGKSQILMRDYTDKLEIKRVILEMCEEVAARARRENKA 299 Query: 285 CRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAG 344 + IS I S A ++ + ++ PT + ++ A + D + G ++ Sbjct: 300 GQTISLGIGYSKVARERGFH---RQLTVVEPTNITMELYEACLKIFDKHYN-GSIVRQVS 355 Query: 345 VMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEG 385 + L + V QLNLFD + RP L VMD + K G Sbjct: 356 ISLANICGDDVIQLNLFDQDQLRPKKRDLGYVMDAIRKKHG 396 >UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM3_DESBD Length = 412 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 177/399 (44%), Gaps = 29/399 (7%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 D++AF+ S E P L GKPVV+ + G A + EA+ G++ P + K L C Sbjct: 19 DMDAFFTSVEQADDPLLQGKPVVIGQSLRGVASAASYEARKYGIRSAMPIVQAKKL---C 75 Query: 66 GVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFGREI 123 F Y ++S ++M+ + L P VE S+DEA+ D++G R + R + Sbjct: 76 PHAVFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIFGPPENIARRL 135 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 +A +L T+LT VGIA K LAK+A+ W + GG+ + + + LP+ Sbjct: 136 KAEILAATNLTCSVGIAPNKFLAKIASD----WNK-PGGLTFIPPADVP-AFLRDLPLGR 189 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC-LQLEEFAP 242 + G+G++ ++L +G+ T+ + + R ++N ++ + L C + P Sbjct: 190 IPGVGKQFQEELRRIGVTTIPHV----LAHPRTYWNELMGKRGAFLHDRACGIDDSPVVP 245 Query: 243 TKQEIICS--RSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 CS + D + + + A R +LR + ++ IK F+ Sbjct: 246 GSDPKSCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGLTVTLKIKFQDFS-- 303 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQLN 359 + S L PT + +I AA R L + + G + +F F Q A+L Sbjct: 304 ----SITRSRTLARPTDITTEIFEAA-RMLLTAEKLPRPVRLIGTGVSNFRFVQ--AELP 356 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 L D A R S+QL MD + K G ++ A I++ Sbjct: 357 LMPD-AGRKRSQQLDQAMDRIRDKFGNKSILRAEAAIRE 394 >UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM Length = 415 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 154/366 (42%), Gaps = 44/366 (12%) Query: 35 GCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR 94 G V+A+++ AK GV+ G+ F + + ++ +++ Y S +++ L + +P Sbjct: 47 GVVLAKSSPAKKFGVRTGESLFSAR--LKCPELIVTPPDFDFYVQNSKALIAILRDYTPD 104 Query: 95 VEIYSIDEAFCDLTGVRNCRDLTDFG------REIRATVLQRTHLTVGVGIAQTKTLAKL 148 VE YSIDEAF D+TG FG IR V + TV +G+A + LAK+ Sbjct: 105 VEQYSIDEAFLDMTGTEAL-----FGPPLTVAHTIRNRVREELGFTVNIGVASNRLLAKM 159 Query: 149 ANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLAD 208 A+ K + T L E K M LPV ++G+G K+L+ GI T+ DLA Sbjct: 160 ASDFEKPDKVHT-----LFPEEVPDK-MWPLPVGSLFGVGPSAVKRLNQCGIYTIGDLAR 213 Query: 209 TDIRFIRKHFNVVLERTVRELRGEPCLQL---EEFAPTKQEIICSRSFGERIT---DYPS 262 T+ R I F RG+ E P ++ ++G +T D Sbjct: 214 TERRVIVGIFGT---------RGDTLWNYANGREADPVTKQTTRDNTYGNSVTLPQDLTR 264 Query: 263 MRQAICSYAA---RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDS 319 QA + A +LR++ + R ++ + ++ + S L PT + Sbjct: 265 PEQADATLLALCDSVGRRLRTDGKTARVVTVQL------VDNAFRRTSHQRTLPDPTNST 318 Query: 320 RDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDT 379 + A + + +W G + GV + QL+LF D R E+L D Sbjct: 319 DRLYEVALQLMRQMW-PGRPVRLVGVSAEKTGTDNFEQLDLFTDTTRRQKQEKLDRTADA 377 Query: 380 LNAKEG 385 L K G Sbjct: 378 LRRKFG 383 >UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteria RepID=Q1IRF1_ACIBL Length = 425 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 23/224 (10%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+ S E +F P L GK VVV + D G V A + A+ GV P L Sbjct: 21 VDMDAFFVSVEELFDPSLKGKAVVVGGHRDERGVVSAASYAARKFGVHSAMPLRTAAKL- 79 Query: 63 RRCGVVCFSSNY-ELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 C F + + E Y + S + L++ SP+VE+ SIDEA+ D+TG G Sbjct: 80 --CPDAIFVNGHPERYREYSGKAFEVLKKFSPKVEMASIDEAYLDMTGTERLH-----GP 132 Query: 122 EIRAT------VLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 ++A + T L +GI ++ +AK+ + AK GV+ + ++ Sbjct: 133 PLKAAHALHQFMKSETKLNCSIGIGTSRLIAKVCSDQAK-----PNGVLYIVP-GQEASF 186 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN 219 ++ L V + G+G+ +KL+ +GIK V DLA D F+R+ F Sbjct: 187 LAPLSVRKIPGVGKVFEQKLNEIGIKKVGDLAKLDDAFLRERFG 230 >UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=Q2S2C0_SALRD Length = 373 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 36/305 (11%) Query: 5 CDVNAFYASCETVFRPDLW-GKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYA E PD + GKP+ V + G V + EA+ GV P + Sbjct: 24 VDMDAFYAQIEQRDFPDRYAGKPIAVGGDPPRGVVQTASYEARPYGVHSAQPAVEAD--- 80 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDFG 120 R+C + F S ++Y + S R+ L + VE S+DEA+ D+T + R T Sbjct: 81 RKCPDLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRPSGTLIA 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R +RA + + T LT G+ K +AK+A+ K G+ + + Q + ++ LP Sbjct: 141 RRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKP-----DGLT-VVRPDEQMEFIAQLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-----------VLERTVREL 229 ++ GIG + K+ +GI+T DL +T R + HF +R V+ Sbjct: 195 IEKFHGIGPVTAAKMQELGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQPD 254 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 R ++ + R+F E I +M + A R A++LR ++ R ++ Sbjct: 255 R------------DRKSVGAERTFPEDIARAETMLDRLSPIAERVAQRLRQANRKGRTVT 302 Query: 290 TFIKT 294 +K+ Sbjct: 303 LKLKS 307 >UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_LEGPL Length = 355 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 11/229 (4%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKDLFR 63 D++ FYA+ E P+L KP+ V + + G + N A+ G++ P L R Sbjct: 11 DMDCFYAAIEMRDFPELANKPIAVGGDAKHRGVIATCNYAARQFGIRSAMPTAHALKLCR 70 Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFGRE 122 ++ ++Y S + S L E + +E S+DEA+ D+T C+ T E Sbjct: 71 E--LILRPVRMDVYQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTESTQCQGSATWIAEE 128 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IRA + Q LT GIA K+LAK+A+ W + G +V E + LPV Sbjct: 129 IRARIYQTRQLTASAGIAPNKSLAKIASD----WHKPNGQMV--IRPEDVSAFVLDLPVR 182 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 ++G+G ++ +KL A+ IKT DL I ++ + F + +R RG Sbjct: 183 KLFGVGPKMEEKLGALNIKTCADLQRYSIEYLLQKFGTMGQRLYELARG 231 >UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=DPO4_DEHSB Length = 390 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 13/215 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+ S E RP+ KPV+V + G V A + EA+ G+ G P K L Sbjct: 9 VDLDAFFVSVEQAVRPEFKDKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLITAKHL- 67 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFG 120 C F N++LY + S + M L + SP +E +DEA+ ++TG + + Sbjct: 68 --CPQAIFIEGNHQLYREYSEKFMLILSDFSPFLEPMGLDEAYLEVTGFESLHGSIAQMA 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +IR + + +GIA +K AK+A AK G ++ E + ++ L Sbjct: 126 SKIRRRITAELGINASIGIANSKVAAKIATEQAK-----PNGQCEVPAGE-EASFLAPLD 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIR 215 + + GIG++ + L ++GI T+ LA F++ Sbjct: 180 IAVMPGIGKKTEQHLKSLGIDTLGKLAALPASFLK 214 >UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus RepID=C7RFL5_ANAPD Length = 413 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D+NA YAS E P L G P+ V N +G ++A++ EAK GVK G+ ++ F Sbjct: 9 DMNACYASIEQKLNPKLKGIPMAVAGNPKNRNGIILAKSQEAKEAGVKTGEALWQA---F 65 Query: 63 RRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDFG 120 +C + +Y+ Y S E + +VE + +DE F D+TG + + Sbjct: 66 AKCPDLTIVPPHYDEYLKHSKLARKIYYEYTNQVEPFGLDECFLDVTGSAHLFGTGEEIA 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +IR + + +TV VG++ K AKL + K V + + ++++ LP Sbjct: 126 NKIRERMKEEVGITVSVGVSFCKIFAKLGSDMKKP------DAVTIIGEDNFKEIVWPLP 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIR 215 V ++ G+GR +KL+ +GI T+ +LA+TD IR Sbjct: 180 VREMVGVGRATERKLNGIGIFTLGELANTDPDLIR 214 >UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=DPO4_XANOM Length = 359 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 104/371 (28%), Positives = 164/371 (44%), Gaps = 35/371 (9%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI-ARNAEAKALGVKMGDPWFKQKDLFR 63 D++AFYAS E P L GKPVVV V+ A + EA+ G++ P + + R Sbjct: 7 VDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRAE---R 63 Query: 64 RCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDFGR 121 C F ++ Y +S +V + VE S+DEA+ D+T + L T+ + Sbjct: 64 LCPNAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQAKTGMQLATEIAQ 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR + + T LT GIA K LAK+A+ W++ G V + R + L V Sbjct: 124 LIRTQIREETELTASAGIAPNKFLAKIASD----WRKPDGQFVIAPS--RIDAFLLPLKV 177 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 + + G+G+ + KL A+GI TV DL + ++ HF + R RG + Sbjct: 178 NRIPGVGKVMDGKLAALGIVTVADLRLRPLEELQAHFGSFGQSLYRRARG---IDERPVE 234 Query: 242 PTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEK----LRSEHQYCRFISTFIKTS 295 P + Q + +F E + A+ ++ R AEK R + R + +KTS Sbjct: 235 PDQDVQSVSSEDTFSEDLA-----LDALDTHILRLAEKTWLATRRTERIGRTVVLKLKTS 289 Query: 296 PFALNEPYYGNSASVKLLTPTQDS-RDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FS 352 F + S + + +Q++ I A TR ++ A RY+ GV L F Sbjct: 290 NFRI----LTRSCTPEQPPVSQEALAQIALALTRRVE--LPAQTRYRLVGVGLSGFSNVE 343 Query: 353 QGVAQLNLFDD 363 +G Q LF + Sbjct: 344 EGAVQGQLFGE 354 >UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2KZY4_9FIRM Length = 418 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 20/293 (6%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYAS E P L KP+++ + G V N EA+ GV+ K+ F Sbjct: 18 VDMDAFYASVEMRDNPTLKDKPLIIGAKPTERGVVATCNYEARKYGVRSA---MNSKEAF 74 Query: 63 RRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFG 120 R C F ++E Y +S + LE + +VE ++DE + DLT V ++ + G Sbjct: 75 RLCPKAVFLYPDFEKYKAVSEELHEILESYTKQVEYIALDEGYLDLTEVAKDFSEAEKIG 134 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REI+ V + LT VGIA KT AK A+ +++ G + E +L+ Sbjct: 135 REIQRRVAEELRLTCSVGIAYGKTAAKTASE-----EKKPNGFFMIQRREDYVELLRDRD 189 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTD---IRFIRKHFNVVLERTVRELRGEPCLQL 237 V ++ +G + +++L + GI TV DL + + +R + ++LE + G ++ Sbjct: 190 VRALFTVGAKTAERLYSFGIYTVKDLQEKEKEVLRLLGNQGKMLLELSY----GIDHRKV 245 Query: 238 EEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 + P Q I +F E +TDY + + + R + + Y R +S Sbjct: 246 VPYRPEDTQSISKEMTFQEDVTDYSFLDDVLFLLSFRVENRAKRYGLYARGVS 298 >UniRef50_Q98R22 DNA-DAMAGE REPAIR PROTEIN MUCB n=1 Tax=Mycoplasma pulmonis RepID=Q98R22_MYCPU Length = 425 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 92/401 (22%), Positives = 177/401 (44%), Gaps = 30/401 (7%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI-ARNAEAKALGVKMGDPWFKQKDLFR 63 D ++++ S R DL+GK +VV N+ +I + + EAKA G+K+G P +K K + Sbjct: 17 LDADSYFVSAIRTIRKDLFGKSMVVAHNHKRAIITSASYEAKAKGIKVGMPLYKAKLI-- 74 Query: 64 RCGVVCFSSNYELYADMSNRVMSTL-EELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFGR 121 VV ++ELY+++S+ + + L E + +++IYSIDE F D + V + + Sbjct: 75 DPNVVVADYSFELYSNLSSNIFNFLYENYTKKIQIYSIDEFFIDASDLVVKKGSILKLAQ 134 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E++ ++ + +G+ +AK++ K + DL +K + + + Sbjct: 135 EMQKAIMDNFSIPFSIGVGPNLWMAKMSTSINKPYGITITKRSDL------KKNIYSQDI 188 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIR--FIRKHFNVVLERTVRELRGEPCLQLEE 239 + GIG+ KL + IKT+ D ++ + K + + L+ E +G Q++ Sbjct: 189 SEYVGIGKSGLAKLSHLNIKTIGDFCNSVFAQGALEKIYGIKLKTIKEECQGISNDQIDT 248 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAE----KLRSEHQYCRFISTFIKTS 295 Q + SF D R +I +Y E KL++ Y ++ ++ Sbjct: 249 SQNDAQSLGSEISFSH---DDLDERSSIFNYFKLICELLEKKLKNRGIYANTLTVKLRDQ 305 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQ 353 + S+KL +S+DI+N + W + + G+ L DF Q Sbjct: 306 NYKWKTK--RKKYSIKLF----ESQDIMNRVIEIFNQFWDE-KKLRGLGISLSDFGDIYQ 358 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 +LFD E++ ++ ++N + R +YF + Sbjct: 359 SDLSFDLFDQKYDSK-KEKINALIKSINKDKTRKVIYFLNE 398 >UniRef50_D2P394 DNA polymerase V n=7 Tax=Listeria RepID=D2P394_LISMO Length = 426 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 107/421 (25%), Positives = 178/421 (42%), Gaps = 33/421 (7%) Query: 4 LC-DVNAFYASCETVFRP-DLWGKPVVVLSNND---GCVIARNAE-AKALGVKMGDPWFK 57 LC DV +F+AS E V R D +VV+SN D G V+A + + K +K G F+ Sbjct: 16 LCVDVKSFFASVECVKRGLDPLQAFLVVMSNADRAGGLVLAASPQMKKVFRIKTGSRKFE 75 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNCRD 115 + R +V +LY ++ + R +YSIDEAF D+T + Sbjct: 76 VPEDDPR--IVIAPPRMKLYLHVNELIQKIFLRYVSREDFHVYSIDEAFLDVTHSKKLFG 133 Query: 116 LTD-FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 + ++I+A +L+ L V VGI LAKLA A K Q+ G+ + + Sbjct: 134 SAEVIAKKIQADILKELRLYVTVGIGDNPLLAKLALDNAAKHQK--SGIAEWRYKDVPET 191 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 + PV D WGIG+R + +L+ MGI ++ L+ +++K V+ E+ G Sbjct: 192 VWKIRPVTDFWGIGKRTAFQLERMGIYSIYGLSQMPPSYLKKRLGVIGEQLYYHSHGIDY 251 Query: 235 LQL-EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 +L E++ P ++ S+ + D + I A +LR+ H + Sbjct: 252 SRLSEKYKPIERSYGKSQILEKDYHDPNQIAIIIQEMVEEVAMRLRNHH---------VD 302 Query: 294 TSPFALNEPYYGNS-----ASVKLLTPTQDSRDIINAATRSLDAIW--QAGHRYQKAGVM 346 TS L+ Y S + K + T S++++ L+ W Q + V Sbjct: 303 TSVIHLSAGYSRYSTRNGFSHQKKIMATDSSKELV---PYFLEMFWKYQENDAVRSVAVS 359 Query: 347 LGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAM 406 + QL++F+D +QL +D + + G L A I +KR+ Sbjct: 360 CAGIKRKTSMQLSVFEDYTKTLQQQQLERTIDKIRDRYGFNALMHANSLIDGATGLKRSA 419 Query: 407 L 407 L Sbjct: 420 L 420 >UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Coriobacteriaceae RepID=C7MN57_CRYCD Length = 454 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 153/369 (41%), Gaps = 32/369 (8%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQKDL 61 L D++AF+AS E + P GKPV+V N + G V + EA+ GV P K Sbjct: 31 LLDLDAFFASVEQLDHPAWRGKPVIVGGNPEARGVVSTASYEARTYGVHSAMPSSTAK-- 88 Query: 62 FRRCGVVCFSSN-YELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 R C ++ + Y ++S +VMS +E+ SP +E SIDEAF D+T R T+ Sbjct: 89 -RLCPNAFWTPGRFSRYREISRQVMSIMEDESPALEQVSIDEAFLDIT---PSRAQTEHP 144 Query: 121 REIRATVLQRT---HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 I + QR +T +G+ ++K +AK A+ A K G + E ++ Sbjct: 145 AAIAQRIQQRVCELGITCSIGLGRSKAVAKTASEAHKP----RGLTIVPPGYE--ETFLA 198 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF--NVVLERT-VRELRGEPC 234 LP + GIG + L GI T+ +A D + F N L R R P Sbjct: 199 GLPTKAMSGIGPAAQQALRKFGITTLGQVAQADDVILNHVFGKNASLMRDRCRGCDDSPV 258 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + E+ SF +T + A+ + AA+ ++R +S ++ Sbjct: 259 MHPAGAKSVSNEM----SFAVDLTSREDIEAALSTVAAKVGRRMRMNGLVGSTLSLKLRR 314 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 F++ +SA L P D I LD +W+ G + G L G Sbjct: 315 GDFSI------HSAQCHLDIPCDDEYVITPILFDLLDRVWRPGDSVRLVGCALTHIEEVG 368 Query: 355 VA-QLNLFD 362 Q LFD Sbjct: 369 APLQETLFD 377 >UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3H3_ERYRH Length = 406 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 157/373 (42%), Gaps = 33/373 (8%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV---LSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 CD++ +A E + P L P+ V S G V+ARN AKA GVK + + + Sbjct: 9 CDIDYCFAQIEIMKNPSLADVPMCVGGDESKRHGIVLARNPIAKAKGVKTAETLNEAR-- 66 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 R+C G+V +++ Y +SN+V E + +VE + IDEA+ D++ L FG Sbjct: 67 -RKCPGLVIVPPSFDDYLTISNQVKDIYREYTDKVESFGIDEAWVDISD-----SLLLFG 120 Query: 121 R------EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 + EIR + LTV +G++ K AKL + K G+ L +E K Sbjct: 121 KPGDIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKP-----DGLTIL--MESHVK 173 Query: 175 LMS-ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 M LPV D+ +G K L+ MGI+T+ DLA D + H + G+ Sbjct: 174 SMIWPLPVQDLLYVGPSTQKSLNKMGIRTIGDLACADENQLHTHIGKMGSLLKSFANGDD 233 Query: 234 CLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 ++ + + + + + +R+ + A + + R+ + + I+ Sbjct: 234 TSEVNPHTDPAKSVGNGMTTPQDLVSIEEVRRVLFVLAESVSSRCRNIEKKGSVLRICIR 293 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 N S KL PT I+N + ++ W + + L D S Sbjct: 294 ------NNQLETLSRQKKLNQPTNTVDQIVNESLFLIERYWDQKQPLRSITITLSDLVST 347 Query: 354 GVA-QLNLFDDNA 365 QL+LFD++ Sbjct: 348 TQPIQLSLFDESV 360 >UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8L3_9ACTN Length = 432 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 164/363 (45%), Gaps = 38/363 (10%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P+ GKPV+V + + G V + EA+ GV+ + K Sbjct: 23 IGLMDLDAFFASVEQLDHPEWRGKPVIVGGSPEKRGVVSTCSYEARVYGVRSAMSSAQAK 82 Query: 60 DLFRRCGVVCFS-SNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 R C ++ +++ Y +MS RVM+ L + +P V+ SIDEAF D++ R C + Sbjct: 83 ---RLCPEAIWTPGHFDRYREMSARVMAILADETPFVDRVSIDEAFFDISPGRFC---DE 136 Query: 119 FGREIRATVLQRTH---LTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 +I + +R +T +G+ + KT+AK+A+ +R + + + Sbjct: 137 HPIQIAQRISRRVSELGITCSIGLGRNKTVAKIAS------ERDKPRGLTIVTPGTEHGF 190 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 ++ LPV + GIG L +GI+T+ LA+ + F + E R G L Sbjct: 191 LAPLPVRAMSGIGAAAESALARVGIRTLGQLAEASDGLLSPIFGINTELVRRRAAG---L 247 Query: 236 QLEEF----APTKQEIICS-RSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 ++ E AP + I + R+F +TD ++ AI +L SE R Sbjct: 248 EVSEVRAIDAPDDVKSISNERTFAHDLTDPSDVKAAI---------QLLSESVGARLRRR 298 Query: 291 FIKTSPFALNEPY-YGNSASV-KLLTPTQDSRDIINAATRSLDA-IWQAGHRYQKAGVML 347 + L Y +G ++ + L D ++ A R L A IW G + AGV + Sbjct: 299 GLAGRTVTLKLKYSFGEGRTIQRKLAHATDDENVFGAVARDLLASIWTEGMHIRLAGVGV 358 Query: 348 GDF 350 DF Sbjct: 359 SDF 361 >UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_LEPIC Length = 364 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 11/217 (5%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYAS E P+ GKP++V N+ V A + EA+ GV+ P K L Sbjct: 11 VDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCSKAAQLA 70 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFGR 121 + V +E+Y ++S ++ E + VE+ S+DE + D+T +N + Sbjct: 71 PQAIFVF--PRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVTFNKKNIPFAVTIAK 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 EIR + +RT LT G+ +K ++KLA+ K G V L + + LPV Sbjct: 129 EIRTEIFKRTELTASAGVGNSKFISKLASEKNK----PNGLTVVLPD--DVISFIDPLPV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF 218 G+G+ ++K+ +GI T DL I + +HF Sbjct: 183 SSFHGVGKVTARKMKELGIYTGKDLRTKSIDELVQHF 219 >UniRef50_C1XR91 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Bacteria RepID=C1XR91_9DEIN Length = 396 Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 109/401 (27%), Positives = 170/401 (42%), Gaps = 44/401 (10%) Query: 7 VNAFYASCETVFRPDLWGKP--VVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 +NA++AS E RP+L GKP VV + C IA + EAK GVK G + L Sbjct: 1 MNAYFASVEQQMRPELRGKPVGVVPVMAESTCCIAVSYEAKRYGVKTGTRVADARLLCPH 60 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGREI 123 +V + +LY + ++ ++ + P + SIDE C L GV R + Sbjct: 61 IAIV--EARPQLYIQVHREILKAIDTVLPIQAVLSIDEVVCKLIGVERKPHQAIRLAEAV 118 Query: 124 RATVLQRT--HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 + + + +L VG+ K LAK+A+ K L+ LE Q + + L Sbjct: 119 KQAIKTQVGPYLRCSVGLGPNKLLAKVASDMKKP--------DGLTLLEPQTLPQALFGL 170 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTV--RELRGEPCLQL 237 + D GIG R+ + + GI TV +L + + + T R LRGE L Sbjct: 171 RLCDFPGIGPRMEARFHSFGITTVEELYQLSPHQLSRIWGSSQIGTSWWRRLRGE---DL 227 Query: 238 EEFAPTKQEIIC-SRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E APT++ I SR + + + + +AA +LR E+ + I F+ Sbjct: 228 PE-APTRRHSISHSRVLPPQERNDERAKAVLMRLVYKAAARLRHENYWTGSIRVFVAY-- 284 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR----YQKAGVMLGDFFS 352 L P + L QD+ +I R+ D +W+ H+ K GV+LG+ Sbjct: 285 --LGRPLWHEECR---LPSCQDTLTLI----RATDRLWK--HKPLGTPLKVGVILGNLEP 333 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 LF ++ +L +D N K G +LYFAG Sbjct: 334 DPSISWPLFSEDQ---KLIRLSQAIDQANRKFGAYSLYFAG 371 >UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaproteobacteria RepID=B9JVH1_AGRVS Length = 428 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 169/396 (42%), Gaps = 31/396 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E PDL KP+++ G V A+ GV+ P FK Sbjct: 45 LAHIDCDAFYASVEKRDNPDLIDKPLIIGGGKRGVVSTACYVARIHGVRSAMPMFKA--- 101 Query: 62 FRRC-GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD----- 115 C V N E Y+ + +V + +EEL+P V+ SIDEAF +L G Sbjct: 102 LEACPDAVVIPPNMEKYSRVGRQVRAMMEELTPLVQPLSIDEAFLELKGTEALHHAPPAL 161 Query: 116 -LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 L R I + + +TV VG++ K LAK+A+ K G + + Sbjct: 162 VLARLARRIESEI----GITVSVGLSYCKFLAKVASDLQKPRGFSVVGEAEALD------ 211 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 ++ PV +WG+G+ + L+ GI+T+ L + + + + + +R R +G Sbjct: 212 FLAPRPVTTIWGVGKAFASTLEKDGIRTIGQLQTMEESDLIRRYGSMGQRLARLSKGIDD 271 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + P K + +F + I+ + + + + A +L+ + + +K+ Sbjct: 272 RDVHTNDPAKS-VSAETTFFDDISRREDLVPHLRKLSEKVAWRLKKQELAGHTVILKLKS 330 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 + F L + + +L PTQ + I + L+ G +++ G+ + DF Sbjct: 331 ADFKL------RTRNRRLDDPTQLADRIFRTGLQMLEK-EADGTKFRLIGIGISDFADPS 383 Query: 355 VAQ-LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 +A +L D +A R + MD L K G+G + Sbjct: 384 LADPPDLVDPDAAR--RAKAEAAMDQLRMKFGKGMV 417 >UniRef50_Q8TIW3 DNA polymerase IV n=4 Tax=Methanosarcinaceae RepID=DPO4_METAC Length = 366 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 160/377 (42%), Gaps = 39/377 (10%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E +P+L GK VVV S G V N A+ G++ G P + K Sbjct: 9 VDMDYFYAAIEEREKPELLGKAVVVCMLSGRSELSGSVSTCNYIAREFGIRSGMPCSRAK 68 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLE------ELSPRVEIYSIDEAFCDLTGVRNC 113 L V E Y +S+R+M L E E S+DEAF ++T R Sbjct: 69 KLNPEA--VFLPVRKEFYTSVSDRIMEILRSYADPGENGDSFEQISVDEAFLEIT-YRAG 125 Query: 114 RDLT---DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 D + G +I+ + ++ +LT +GI K +AK+A+ A K G+ +S E Sbjct: 126 GDFNLAFELGMQIKKEIKEKENLTCSIGIGPNKLIAKMASSAKK-----PDGITVVSP-E 179 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF----NVVLERTV 226 Q + L V +WGIG +KKL M I TV DLA+ D+ + F L++ Sbjct: 180 NQEAFLWPLKVSKLWGIGDVTAKKLQEMDIVTVKDLAEHDVIELISTFGKSRGTWLKQAA 239 Query: 227 RELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 + P + E ++I + E D + + A EKL S R Sbjct: 240 SGIDDSPLKERE----GSEQIGRIATLPEDTLDQELILSLLEKLAGDVIEKLDSRELSFR 295 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSL-DAIWQAGHRYQKAGV 345 ++ + +N + + S L P ++ AA L + + ++ +++ GV Sbjct: 296 VVTVTV------INSNFRTYTKSRTLNHPVSSKETLLEAAREILSEFLSESKTEFRRVGV 349 Query: 346 MLGDFFSQGVAQLNLFD 362 +G + Q +LFD Sbjct: 350 RVGG-LQKKKGQTSLFD 365 >UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=DPO4_METMJ Length = 360 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 135/297 (45%), Gaps = 14/297 (4%) Query: 6 DVNAFYASCETVFRPDLWGKPVVVLSN-----NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D+++F+AS E P L G+PV+V ++ G V + EA+ GV G P + D Sbjct: 12 DMDSFFASIEVRRDPSLAGRPVIVGADPKGGAGRGVVSTCSYEARRYGVHSGMPISRAFD 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V + YA +S +M+ L + R+E SIDEA+ D++ + Sbjct: 72 LCPHG--VYLPVDRPFYASVSVEIMALLSRHAGRIEQVSIDEAYLDVSDAGSFPAAGALA 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I+ V + T LT VG+A K +AK+A+ +Q+ G + + + +++LP Sbjct: 130 AAIKREVREETGLTCSVGVAPGKAVAKIAS----DFQKPDG--LTIVRPDEVAGFLASLP 183 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + GIG++ + L GI TV DLA D++ + R RG +++ Sbjct: 184 VGRIPGIGKKTGEDLRQAGILTVGDLARRDVQEVIARLGRSGVRVHHLARGIDDGEVQGR 243 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 K I +F D P + + A AE LR+++ CR ++ ++ F Sbjct: 244 EGCKS-ISRETTFEADTADPPVLAGTLAELADDVAETLRADNLRCRTVTVKVRYRGF 299 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID... 581 e-164 UniRef50_A1U8F5 DNA-directed DNA polymerase n=6 Tax=Gammaproteob... 463 e-129 UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcu... 455 e-126 UniRef50_A4SWQ9 DNA-directed DNA polymerase n=13 Tax=cellular or... 451 e-125 UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_S... 441 e-122 UniRef50_B7JBK8 UmuC protein n=1 Tax=Acidithiobacillus ferrooxid... 439 e-121 UniRef50_P07375 Protein mucB n=137 Tax=root RepID=MUCB_ECOLX 437 e-121 UniRef50_B0VH44 Protein umuC n=1 Tax=Candidatus Cloacamonas acid... 437 e-121 UniRef50_Q0VP68 DNA-damage-inducible protein n=4 Tax=Proteobacte... 435 e-120 UniRef50_Q48B37 RulB protein n=30 Tax=Pseudomonas RepID=Q48B37_P... 435 e-120 UniRef50_Q5ZUT9 SOS mutagenesis and repair UmuC protein n=12 Tax... 426 e-118 UniRef50_Q2W5K5 Nucleotidyltransferase/DNA polymerase involved i... 425 e-117 UniRef50_Q11V03 Nucleotidyltransferase/DNA polymerase involved i... 425 e-117 UniRef50_C6XDV2 DNA-directed DNA polymerase n=2 Tax=Methylovorus... 425 e-117 UniRef50_A9E9W4 Nucleotidyltransferase/DNA polymerase involved i... 424 e-117 UniRef50_D2QVG5 DNA-directed DNA polymerase n=1 Tax=Spirosoma li... 423 e-117 UniRef50_A8ZLK7 DNA polymerase V, putative n=4 Tax=Cyanobacteria... 423 e-117 UniRef50_B4WV07 ImpB/MucB/SamB family n=6 Tax=Synechococcus sp. ... 423 e-117 UniRef50_A6ET82 Nucleotidyltransferase/DNA polymerase involved i... 422 e-116 UniRef50_C3X802 DNA-directed DNA polymerase n=1 Tax=Oxalobacter ... 421 e-116 UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM... 421 e-116 UniRef50_B4YK21 TumC n=1 Tax=Tetrathiobacter kashmirensis RepID=... 420 e-116 UniRef50_C6M791 Protein UmuC n=2 Tax=Neisseria RepID=C6M791_NEISI 418 e-115 UniRef50_A1BFA1 DNA-directed DNA polymerase n=7 Tax=Chlorobiacea... 417 e-115 UniRef50_C7RB82 DNA-directed DNA polymerase n=1 Tax=Kangiella ko... 416 e-115 UniRef50_C7I5S1 DNA-directed DNA polymerase n=2 Tax=Proteobacter... 416 e-115 UniRef50_C6BX75 DNA-directed DNA polymerase n=1 Tax=Desulfovibri... 414 e-114 UniRef50_C8X192 DNA-directed DNA polymerase n=2 Tax=Deltaproteob... 414 e-114 UniRef50_B5JVF1 UmuC protein n=1 Tax=gamma proteobacterium HTCC5... 412 e-113 UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved i... 412 e-113 UniRef50_D0J481 DNA-directed DNA polymerase n=4 Tax=cellular org... 411 e-113 UniRef50_D0KZ56 DNA-directed DNA polymerase n=12 Tax=root RepID=... 410 e-113 UniRef50_A5FIG7 DNA-directed DNA polymerase n=10 Tax=cellular or... 410 e-113 UniRef50_Q1QXT4 DNA-directed DNA polymerase n=1 Tax=Chromohaloba... 410 e-113 UniRef50_C0VGI8 Nucleotidyltransferase/DNA polymerase n=4 Tax=Ac... 410 e-113 UniRef50_C6XEM8 DNA-directed DNA polymerase n=1 Tax=Methylovorus... 407 e-112 UniRef50_Q15TC7 DNA-directed DNA polymerase n=25 Tax=Proteobacte... 407 e-112 UniRef50_Q19NE6 UV protection and repair protein n=9 Tax=Enterob... 407 e-112 UniRef50_C9LED2 UmuC protein n=1 Tax=Prevotella tannerae ATCC 51... 401 e-110 UniRef50_Q4FMY4 UmuC n=6 Tax=Bacteria RepID=Q4FMY4_PELUB 400 e-110 UniRef50_B9Z6P1 DNA-directed DNA polymerase n=2 Tax=Proteobacter... 400 e-110 UniRef50_A9W7Y3 DNA-directed DNA polymerase n=10 Tax=Rhizobiales... 400 e-110 UniRef50_A5GPY7 Bacterial UmuC protein homolog (SOS-regulated pr... 400 e-110 UniRef50_A5Y0S5 UmuC-like protein n=9 Tax=Proteobacteria RepID=A... 400 e-110 UniRef50_Q0ACU7 DNA-directed DNA polymerase n=3 Tax=Nitrosomonas... 399 e-109 UniRef50_Q3AKE9 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 396 e-109 UniRef50_D1R5W7 Putative uncharacterized protein n=1 Tax=Parachl... 395 e-108 UniRef50_D0Z2K2 Error-prone repair protein UmuC n=5 Tax=Photobac... 393 e-108 UniRef50_B2FJL0 Putative UV protection and mutation protein n=1 ... 393 e-108 UniRef50_UPI0000E87FBE DNA repair protein n=1 Tax=Methylophilale... 392 e-107 UniRef50_Q30X29 DNA-directed DNA polymerase n=8 Tax=Proteobacter... 390 e-107 UniRef50_D0RPK3 Protein UmuC n=1 Tax=alpha proteobacterium HIMB1... 390 e-107 UniRef50_A5FU54 UMUC domain protein DNA-repair protein n=2 Tax=A... 387 e-106 UniRef50_A6WU94 DNA-directed DNA polymerase n=28 Tax=Gammaproteo... 386 e-105 UniRef50_D1PC12 UmuC protein n=2 Tax=Bacteria RepID=D1PC12_9BACT 385 e-105 UniRef50_C6NU08 Error-prone repair protein UmuC n=1 Tax=Acidithi... 383 e-105 UniRef50_Q2YI99 Nucleotidyltransferase/DNA polymerase n=3 Tax=Ba... 382 e-104 UniRef50_B8DRU5 DNA-directed DNA polymerase n=13 Tax=Proteobacte... 382 e-104 UniRef50_B6BWB3 DNA-directed DNA polymerase n=1 Tax=beta proteob... 380 e-104 UniRef50_B3E0C4 Nucleotidyltransferase/DNA polymerase UmuC n=1 T... 379 e-103 UniRef50_C0YV48 Probable RumB/ImpB like DNA repair protein n=1 T... 378 e-103 UniRef50_Q1QXW8 DNA-directed DNA polymerase n=1 Tax=Chromohaloba... 378 e-103 UniRef50_Q2P505 Polymerase V subunit n=4 Tax=Xanthomonadaceae Re... 377 e-103 UniRef50_Q31HB8 ImpB/mucB/samB family protein n=1 Tax=Thiomicros... 377 e-103 UniRef50_A6DHJ1 Putative uncharacterized protein n=1 Tax=Lentisp... 376 e-102 UniRef50_Q3B3L9 DNA-directed DNA polymerase n=2 Tax=Chlorobium/P... 376 e-102 UniRef50_Q8VMP6 RuvB protein n=4 Tax=Pseudomonas RepID=Q8VMP6_PSEPU 375 e-102 UniRef50_D1VXB9 Putative DNA polymerase V subunit UmuC n=1 Tax=P... 375 e-102 UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter... 371 e-101 UniRef50_Q31B23 DNA-directed DNA polymerase n=7 Tax=Prochlorococ... 369 e-100 UniRef50_A0K1P6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 368 e-100 UniRef50_A6EED8 Nucleotidyltransferase/DNA polymerase involved i... 367 e-100 UniRef50_C2BWE4 DNA-directed DNA polymerase n=1 Tax=Mobiluncus c... 365 2e-99 UniRef50_B2I3H3 Nucleotidyltransferase/DNA polymerase n=12 Tax=A... 364 3e-99 UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alke... 364 4e-99 UniRef50_Q2RYM0 UmuC protein n=2 Tax=Salinibacter ruber DSM 1385... 363 5e-99 UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_... 361 3e-98 UniRef50_A0L3I2 DNA-directed DNA polymerase n=1 Tax=Shewanella s... 361 3e-98 UniRef50_A3M2E2 DNA-directed DNA polymerase n=8 Tax=Acinetobacte... 360 9e-98 UniRef50_C0LIJ7 Putative DNA polymerase V subunit UmuC n=1 Tax=A... 359 1e-97 UniRef50_Q0KKM4 Putative UV protection protein n=1 Tax=Plasmid p... 355 2e-96 UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaero... 353 6e-96 UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter... 353 7e-96 UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 352 1e-95 UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales R... 345 2e-93 UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteob... 343 7e-93 UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalob... 342 2e-92 UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 341 3e-92 UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collins... 340 5e-92 UniRef50_A6UXE7 Ultraviolet light resistance protein B n=1 Tax=P... 340 6e-92 UniRef50_UPI0001C34BBE DNA-directed DNA polymerase n=3 Tax=Neiss... 340 8e-92 UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 338 2e-91 UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DP... 338 3e-91 UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria Re... 337 4e-91 UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class... 337 4e-91 UniRef50_Q6MCK0 Putative SOS mutagenesis and repair protein UmuC... 337 6e-91 UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermo... 335 2e-90 UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostri... 335 2e-90 UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica... 335 2e-90 UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=... 334 3e-90 UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomy... 334 4e-90 UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 333 7e-90 UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q... 333 8e-90 UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO... 333 8e-90 UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_... 333 1e-89 UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcu... 333 1e-89 UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX... 333 1e-89 UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomyceta... 332 2e-89 UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9... 330 9e-89 UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4... 329 1e-88 UniRef50_C9M6E1 UmuC protein n=1 Tax=Jonquetella anthropi E3_33 ... 329 1e-88 UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomyceta... 328 2e-88 UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermoth... 328 2e-88 UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteri... 328 3e-88 UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus ... 328 3e-88 UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranu... 328 3e-88 UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 154... 327 6e-88 UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 326 1e-87 UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia R... 326 1e-87 UniRef50_Q46L62 DNA-directed DNA polymerase n=2 Tax=Prochlorococ... 325 1e-87 UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Rosebur... 324 5e-87 UniRef50_B5TTR9 RumB n=6 Tax=Bacteria RepID=B5TTR9_9BACT 323 7e-87 UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis... 323 1e-86 UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DP... 323 1e-86 UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_... 323 1e-86 UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia deni... 322 2e-86 UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicro... 321 3e-86 UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostri... 321 3e-86 UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms Re... 321 4e-86 UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicu... 320 6e-86 UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteri... 320 6e-86 UniRef50_Q8RNE6 UmuC protein (Fragment) n=6 Tax=Proteobacteria R... 319 8e-86 UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibri... 319 8e-86 UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteri... 319 9e-86 UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 319 2e-85 UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2... 318 2e-85 UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral t... 317 5e-85 UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatel... 317 5e-85 UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothri... 317 6e-85 UniRef50_Q0EYF1 Putative uncharacterized protein n=1 Tax=Maripro... 317 6e-85 UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2... 316 7e-85 UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=D... 315 2e-84 UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria R... 314 4e-84 UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidet... 314 5e-84 UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerof... 313 6e-84 UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesti... 313 9e-84 UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium s... 313 1e-83 UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobaci... 312 1e-83 UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacter... 312 2e-83 UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomyceta... 312 2e-83 UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class... 312 2e-83 UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospiri... 311 2e-83 UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiale... 311 2e-83 UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobac... 311 2e-83 UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimal... 311 3e-83 UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=... 311 4e-83 UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A... 311 4e-83 UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiale... 310 6e-83 UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved i... 310 6e-83 UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bactero... 309 1e-82 UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=u... 309 1e-82 UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia ext... 308 2e-82 UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 308 2e-82 UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutyl... 308 2e-82 UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. ... 308 2e-82 UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collins... 308 3e-82 UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=... 308 4e-82 UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaeroc... 307 5e-82 UniRef50_B1YIX5 DNA-directed DNA polymerase n=2 Tax=Exiguobacter... 307 5e-82 UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=... 306 9e-82 UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved i... 306 1e-81 UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42... 306 1e-81 UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_H... 306 1e-81 UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales... 305 2e-81 UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus... 305 2e-81 UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter h... 305 2e-81 UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_... 304 3e-81 UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=... 304 3e-81 UniRef50_A8UAY3 ImpB/MucB/SamB family protein n=5 Tax=Bacilli Re... 304 4e-81 UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_C... 304 5e-81 UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteri... 304 5e-81 UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclass... 303 8e-81 UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidete... 303 1e-80 UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_T... 302 2e-80 UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdema... 302 2e-80 UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax... 302 2e-80 UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaprote... 302 2e-80 UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacte... 301 3e-80 UniRef50_D2P394 DNA polymerase V n=7 Tax=Listeria RepID=D2P394_L... 301 3e-80 UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevi... 301 3e-80 UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 301 4e-80 UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacte... 301 4e-80 UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ... 300 7e-80 UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttle... 300 8e-80 UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sph... 299 1e-79 UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 299 1e-79 UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacte... 299 2e-79 UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella c... 299 2e-79 UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacter... 298 2e-79 UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae Rep... 298 3e-79 UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdema... 298 3e-79 UniRef50_UPI0000F2F527 DNA-directed DNA polymerase n=1 Tax=Acine... 298 3e-79 UniRef50_Q03X78 Nucleotidyltransferase/DNA polymerase for DNA re... 298 4e-79 UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaeros... 298 4e-79 UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_L... 297 6e-79 UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 296 1e-78 UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved i... 294 4e-78 UniRef50_C2HDM1 Possible DNA-directed DNA polymerase n=83 Tax=Fi... 294 4e-78 UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 294 5e-78 UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42... 292 1e-77 UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiop... 292 2e-77 UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria Re... 292 2e-77 UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damag... 291 2e-77 UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=... 291 3e-77 UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 291 3e-77 UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms R... 291 3e-77 UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium... 291 4e-77 UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria Rep... 290 6e-77 UniRef50_A9NFA5 DNA-damage repair protein n=5 Tax=Bacteria RepID... 290 8e-77 UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiri... 290 8e-77 UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteob... 289 9e-77 UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus... 289 1e-76 UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli ... 289 1e-76 UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychroph... 288 2e-76 UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteob... 288 3e-76 UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia R... 286 8e-76 UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacil... 286 1e-75 UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealy... 285 2e-75 UniRef50_C9AAQ9 DNA directed DNA polymerase n=4 Tax=Enterococcus... 284 3e-75 UniRef50_Q2SS65 ImpB/MucB/SamB family protein n=3 Tax=Mycoplasma... 284 4e-75 UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_S... 284 4e-75 UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxoba... 284 5e-75 UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0... 284 6e-75 UniRef50_B7LX10 Protein impB n=4 Tax=Enterobacteriaceae RepID=B7... 283 7e-75 UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonel... 283 7e-75 UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomyceta... 283 1e-74 UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidoba... 283 1e-74 UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_P... 282 2e-74 UniRef50_A0AM11 Complete genome n=24 Tax=Listeria RepID=A0AM11_L... 281 2e-74 UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved i... 281 3e-74 UniRef50_D2LRT2 DNA-directed DNA polymerase n=3 Tax=Bacillus Rep... 281 3e-74 UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gam... 281 4e-74 UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bi... 281 5e-74 UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicro... 280 6e-74 UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=V... 279 1e-73 UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_L... 279 2e-73 UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=... 279 2e-73 UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella pa... 279 2e-73 UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=... 279 2e-73 UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella p... 278 2e-73 Sequences not found previously or not previously below threshold: >UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID=UMUC_ECOLI Length = 422 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 422/422 (100%), Positives = 422/422 (100%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF Sbjct: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN Sbjct: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL Sbjct: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR Sbjct: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 Query: 421 VK 422 VK Sbjct: 421 VK 422 >UniRef50_A1U8F5 DNA-directed DNA polymerase n=6 Tax=Gammaproteobacteria RepID=A1U8F5_MARAV Length = 430 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 211/422 (50%), Positives = 284/422 (67%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FALCD+N+FYASCE +F P G+PVVV SNNDGC +AR+ EAKALG+KMG P F+ ++ Sbjct: 8 VFALCDMNSFYASCEQLFNPAFRGRPVVVASNNDGCAVARSPEAKALGIKMGQPIFELRE 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + G++ SSNY LY DMS+R M L E +PRV YSIDEAF DLTG+ + DFG Sbjct: 68 YVEKHGLIVCSSNYALYGDMSHRFMLALAECAPRVMPYSIDEAFLDLTGIDSVVSYLDFG 127 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++ V T L + VGIA + TLAKLANHAAK + T GVVDL++ +RQR+LM P Sbjct: 128 HHVKELVRIWTGLPICVGIAPSPTLAKLANHAAKHY-PATRGVVDLTDRDRQRRLMHLTP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL-QLEE 239 V++VWGIGR++SK+LDA+GIKT LDLAD+D ++IR HF+VV+ERTVREL G PC L E Sbjct: 187 VEEVWGIGRKLSKRLDALGIKTALDLADSDPKWIRDHFSVVVERTVRELNGIPCHSDLLE 246 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 AP KQ+I+CS+SFG +TD SM AI ++A+RA+EKLR E++ C +++ F+ TS F Sbjct: 247 VAPAKQQILCSKSFGAPVTDLNSMLAAITAHASRASEKLRRENRDCGYLAAFMSTSRFRT 306 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y N + L PT D+R+I+ A ++W+ G+RY KAG++L DF G Q + Sbjct: 307 GSHY-ANQQGITLPFPTSDTREIVRHAVSIARSLWREGYRYNKAGIVLTDFRVPGACQSD 365 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ-GIQQQWQMKRAMLSPRYTTRSSDL 418 F + +LM +D +N+ G+ T+ F Q Q WQM+R LSP YTTR +D+ Sbjct: 366 FFSQVEDDERNRKLMRTLDKINSIAGKNTIQFGRQIHKNQSWQMRRENLSPAYTTRWADI 425 Query: 419 LR 420 Sbjct: 426 PV 427 >UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9G4_MAGSM Length = 421 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 198/421 (47%), Positives = 260/421 (61%), Gaps = 3/421 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +AL D N FYASCE +F+P L GKPVVVLSNNDGC IAR+ EAK LG+ MG P + + L Sbjct: 3 YALVDCNNFYASCERLFQPHLEGKPVVVLSNNDGCAIARSNEAKQLGIAMGAPLHQIQAL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ V FSSNY LY D+S RVM TLE+L+PRVEIYSIDEAF DL G+ + GR Sbjct: 63 IKQHQVALFSSNYPLYGDLSARVMRTLEQLAPRVEIYSIDEAFLDLQGMPAPQRQI-LGR 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I V + T + V VGI TKTLAK+AN AKK +T GV+DLS+ + RK + LPV Sbjct: 122 TIHQQVKRWTGIPVSVGIGPTKTLAKVANRFAKK-SPKTEGVLDLSDPQWCRKALHQLPV 180 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWG+G R +K+L+ GI T L L+ R+ FNVVLERTVRELRGE + Sbjct: 181 GEVWGVGPRWAKRLNQAGIDTALQLSRMPPPLARQQFNVVLERTVRELRGESVIPFAALP 240 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 +Q I +R+FG++I + +++AI S+ RAAEKLR + + FI T+ F+ + Sbjct: 241 AARQSIATTRTFGQKIHTHDEIKEAISSFTVRAAEKLRKQGLLAAALHLFITTNRFSEQD 300 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y NS + P D+ ++ A +LDAI++ G+RYQKAGV+L S Q +LF Sbjct: 301 LQYKNSLTWSFQQPQDDTLTLLTGAHAALDAIYRPGYRYQKAGVILLGLVSAQHFQPSLF 360 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-IQQQWQMKRAMLSPRYTTRSSDLLR 420 P S LM +D LN K GRGT+ F +G + W M++ SP YTTR SDL + Sbjct: 361 APPPRLPNSRALMRTLDGLNQKMGRGTVRFGAEGPPKPSWGMRQLQRSPAYTTRWSDLPQ 420 Query: 421 V 421 V Sbjct: 421 V 421 >UniRef50_A4SWQ9 DNA-directed DNA polymerase n=13 Tax=cellular organisms RepID=A4SWQ9_POLSQ Length = 450 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 190/424 (44%), Positives = 270/424 (63%), Gaps = 4/424 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FAL DVN FY SCE VF+P L P+VVLSNNDGC +AR+AE KALG+K G PWF+ ++L Sbjct: 28 FALVDVNNFYVSCERVFQPKLEDVPMVVLSNNDGCAVARSAEVKALGIKTGTPWFQMQEL 87 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDFG 120 ++ G+ +SSNY LY DMS+RV+ L +P +E+YSIDE+F + T ++ +D + G Sbjct: 88 AKKHGIQAYSSNYTLYGDMSSRVVEVLRAFTPNLEVYSIDESFLQIETVLKQYQDTVELG 147 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSA 178 R ++ V T L V VGI +KTLAK ANH AKK Q Q GV D++ E + MS Sbjct: 148 RSMKEKVRDTTGLPVCVGIGASKTLAKFANHLAKKHQ-QFAGVCDVNAMPKEEFYQWMSE 206 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 V +VWGIGR+++KKL A I +V DL + +R+ + VV+ER ELRG CL+LE Sbjct: 207 TSVAEVWGIGRQLAKKLKAQNIHSVFDLLQASPQAMRQQYGVVMERLCYELRGVSCLKLE 266 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E AP KQ+II SRSFG+ +T + +++ +AARAAEKLRS++ ++ FI+T+PF Sbjct: 267 EVAPAKQQIIASRSFGKLVTKLEELAESVAMHAARAAEKLRSQNGTTGALTVFIQTNPFK 326 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 NEP + S ++ L P+ ++ + NAA + L I+Q+G RY+KAGV+L + AQ Sbjct: 327 QNEPQHHQSITIPLSDPSDNTLTLTNAALKGLKQIYQSGFRYKKAGVILNLISDKPTAQQ 386 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +LF+D + S LM +D +N++ G + A G +Q+WQM+ SP YTTR +L Sbjct: 387 SLFEDIETKGKSAHLMKAVDEINSRFGNAAIRSAAMGTKQEWQMRSGNRSPNYTTRWDEL 446 Query: 419 LRVK 422 + Sbjct: 447 PVAR 450 >UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_SYNP6 Length = 418 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 200/421 (47%), Positives = 263/421 (62%), Gaps = 10/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L G+PVVVLSNNDGCVIAR+AEAKALG+ MG P+FK KD Sbjct: 1 MFALIDCNNFYVSCERVFDPKLQGQPVVVLSNNDGCVIARSAEAKALGIPMGIPFFKVKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + FSSNY LY DMS RVM TL L P +E+YSIDEAF D +G + G Sbjct: 61 LISQHQIQVFSSNYALYGDMSQRVMQTLATLCPDLEVYSIDEAFLDFSGFQA--QPLQQG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + IR TV Q T + V +GIA TK LAK+AN AK Q GGV LS + Q LM LP Sbjct: 119 QLIRQTVGQWTGIPVSIGIAATKVLAKVANKLAK----QNGGVFVLSPSKVQAVLM-TLP 173 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V++VWGI R ++L A+ I T +L T++ +R+ FN+VLER VRELRGE CL LE Sbjct: 174 VEEVWGISSRWGQRLRALNISTAAELQATNLNLMRQQFNIVLERIVRELRGESCLPLESI 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q ++ SRSFG+ IT P ++QA+ +Y +RAAE+LRS +++ F++T+ F Sbjct: 234 VNPQQSLVVSRSFGQPITTLPELKQAVATYVSRAAEELRSRQLTTSYLTVFVRTNRFQ-- 291 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y +AS LLTPT + ++ A R ++++Q G Y+KAGV+ S Q +L Sbjct: 292 ENYEAPNASQGLLTPTNHTGKLLEIALRCTESLYQPGRAYKKAGVLFQGLGSAQSIQQSL 351 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F++ + LM MD LN + GR +L++ G +Q W M+ SP+YTTR DL Sbjct: 352 FEE-SDSEKGAALMVTMDRLNRRYGRQSLHYGATGTRQPWAMRSDQRSPQYTTRWQDLPE 410 Query: 421 V 421 V Sbjct: 411 V 411 >UniRef50_B7JBK8 UmuC protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7JBK8_ACIF2 Length = 427 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 203/422 (48%), Positives = 258/422 (61%), Gaps = 4/422 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE VFRPDL G+PVVVLSNNDGCV+AR+AE KALGV MG PWF+ + L Sbjct: 3 IALVDANNFYVSCERVFRPDLEGRPVVVLSNNDGCVVARSAEVKALGVAMGTPWFQLQKL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 RR G++ SSNY LYADMSNR+M L SP E+YSIDE F DL+G R L+ G+ Sbjct: 63 ARREGIIALSSNYSLYADMSNRMMGILSTFSPIQEVYSIDECFLDLSGFAQDR-LSQLGQ 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG-GVVDLSNLERQRKLMSALP 180 R V Q L VGVGIA TKTLAKLANH AKK G V D QR L+ LP Sbjct: 122 AARQRVRQWVGLPVGVGIAATKTLAKLANHVAKKRPEYAGVCVWDDLPEGDQRHLLQQLP 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+GR+ + +L GI+TV DL D +RK F++++ER++RELRGEPC+ + E Sbjct: 182 VSEVWGVGRQWTTRLQETGIQTVWDLRQADPALMRKRFSILMERSIRELRGEPCIAMVEI 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +QEI SRSFG +T + +AI Y RA KLR + + FI TSPF Sbjct: 242 PPPRQEIQSSRSFGRPVTSAEELGEAISLYTVRAVYKLRRQGSVAGALRVFIHTSPFQAR 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y + +V L P+QD+R + A +L ++++G Y KAGV L + S Q +L Sbjct: 302 LPSYHATRTVALNRPSQDTRVFLQAGRIALADMYRSGFAYAKAGVHLLEITSADALQADL 361 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ--WQMKRAMLSPRYTTRSSDL 418 F + +LMT +D +NA+ G GTL G+Q+ W MKR SP YTTR ++L Sbjct: 362 FLSAEEEARAHRLMTTLDRVNARFGTGTLQPGVAGLQEPRGWAMKRGNKSPAYTTRWAEL 421 Query: 419 LR 420 R Sbjct: 422 AR 423 >UniRef50_P07375 Protein mucB n=137 Tax=root RepID=MUCB_ECOLX Length = 420 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 233/419 (55%), Positives = 278/419 (66%), Gaps = 4/419 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL DVN YASCE FRPDL + V VLSNNDG ++ARN AK G+KMGDP+FK + Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R + FSSNY LYA MS R + +E L+ VE YSIDE F D G+ L FG Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R V + T L GVGIA+TKTLAKL NHAAK W TGGVV L + R +KLMS LP Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTW-PATGGVVALDDGARLKKLMSILP 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+G R K L MGIKTVLDLA D R IRK F VVLERTVRELRGE C LEE Sbjct: 180 VAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEEN 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P KQ+I+ SRSFG+R+ M+QA+ +AARAAEKLR+E QYCR IS FI+TSP+++ Sbjct: 240 PPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSVR 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + Y N A+ KL TQDSR II AA IW+ Y KAGVML DF + AQL+L Sbjct: 300 DTQYANQATEKLTVATQDSRTIIQAAQAL-ARIWREDIAYAKAGVMLADFSGKE-AQLDL 357 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 FD P GSE LM V+D +N + G+ L+FAGQGI + M+R MLSP YTT + Sbjct: 358 FDSATPSAGSEALMAVLDGINRR-GKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIP 415 >UniRef50_B0VH44 Protein umuC n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH44_9BACT Length = 429 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 192/422 (45%), Positives = 257/422 (60%), Gaps = 3/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + AL D N FY SCE VF P L KPV VLSNNDGC+++R+ E K L + MG P FK + Sbjct: 11 IVALVDCNNFYVSCERVFNPKLNNKPVAVLSNNDGCIVSRSQEIKDLKIPMGAPGFKYEG 70 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ G SSNY LYADMS+RVM L SP VEIYSIDEAF L G +N RDL +FG Sbjct: 71 LIKKHGGTLLSSNYALYADMSSRVMEVLALFSPEVEIYSIDEAFLGLNGFKN-RDLENFG 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++I+ TV Q T + V VGI+QTKTLAK+ANH AK++ G + L + ER K ++ P Sbjct: 130 KKIKRTVFQWTGIPVSVGISQTKTLAKVANHFAKRYSAFQGSLCLLDD-ERITKALAKTP 188 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR+ K L I+T L L D + +FI + V +TV ELRG C+ L+E Sbjct: 189 VSEVWGIGRQYDKFLRQHKIETALQLRDAEDKFIEHYLTSVGLKTVLELRGYACIDLDEA 248 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I+ SRSFG++++ +++AI Y RAAEKLR + + F+ T+ F Sbjct: 249 PANKKSIVTSRSFGKQVSSLNDLQEAISEYVTRAAEKLRKQKSVAGLLMVFLSTNRFKEG 308 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NS S L PT + ++I A LD ++ G ++KAGVML D + L+ Sbjct: 309 -PQYNNSLSTTLFPPTAYTPELIKTALNLLDDLYLPGFEFKKAGVMLADIIPEKDVPLSF 367 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 D N ++LM MD LN G+ TL++A GI++ W+MKRA LSP YTT +DL + Sbjct: 368 MDTNYLDDKRKKLMEAMDKLNRTYGQDTLFYASSGIKKDWKMKRAKLSPHYTTHWNDLPK 427 Query: 421 VK 422 VK Sbjct: 428 VK 429 >UniRef50_Q0VP68 DNA-damage-inducible protein n=4 Tax=Proteobacteria RepID=Q0VP68_ALCBS Length = 428 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 206/431 (47%), Positives = 276/431 (64%), Gaps = 12/431 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FYA+CE +FRPDL G+PVVVLSNNDGC++A +AEAKALGVK G P F+ D Sbjct: 1 MFALVDCNSFYAACERLFRPDLQGRPVVVLSNNDGCIVAGSAEAKALGVKTGMPLFQAHD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R V FSSNY LY D+S RVM+TLE L+PRVE YSIDEAF D++ + +L Sbjct: 61 LIRGHKVAVFSSNYALYGDISQRVMATLETLAPRVEAYSIDEAFLDVS-LMKTAELQPLA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +IRA + + + V VG+A TK LAKLANHAAK++ TGGVV LS+ R+ KL+S P Sbjct: 120 LQIRARIDRWVGVPVCVGVAPTKVLAKLANHAAKRY-PATGGVVVLSDPLRRDKLLSLTP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + VWG+GRR+ + +A+GI T LDLA D+ IR+ F+VV ER VREL GEPCL L+ Sbjct: 179 ISQVWGVGRRLRGRFEALGINTALDLARADVGMIRQRFSVVQERLVRELNGEPCLSLDTQ 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q++I SRSFGE + P +RQA+ + +RA E LR E Y ++ +++T+P Sbjct: 239 PSPRQQVIYSRSFGEPVAALPPLRQALSDFVSRAMESLRKEGLYAGRVTVYLRTAPMGKP 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + ++ S L T D+R ++ A L +W G+RY KAGV+L D + Q L Sbjct: 299 QQLFPDTLSAVLSPATADTRLVVRQAQALLAQLWWPGYRYGKAGVILTDLRGRDQVQCGL 358 Query: 361 FDDNAPRPGS-----EQLMTVMDTLNAKEGRGTLYFAGQGIQQQ----WQMKRAMLSPRY 411 F + P E LM VMD++N G G ++ AG+G+Q W M+RA LSP Y Sbjct: 359 FAEQKPAEQETGRRGEALMAVMDSINQ-SGVGKVWLAGRGMQGNQHSTWAMRRAHLSPAY 417 Query: 412 TTRSSDLLRVK 422 T+R SDL V+ Sbjct: 418 TSRWSDLPVVR 428 >UniRef50_Q48B37 RulB protein n=30 Tax=Pseudomonas RepID=Q48B37_PSE14 Length = 427 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 202/422 (47%), Positives = 273/422 (64%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F L D N+FYASCE VFRPDL P+VVLSNNDGCVIAR+ +AK VKMG P+F+ KD Sbjct: 8 VFGLVDCNSFYASCERVFRPDLAKVPIVVLSNNDGCVIARSYDAKPY-VKMGAPYFQIKD 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + RR G+ FSSN+ LY D+S RVM+ +E + P VE+YSIDEAF DL+G+ +LT+ G Sbjct: 67 VLRRHGIQSFSSNFALYGDLSQRVMAIIESMVPAVEVYSIDEAFADLSGM--PGNLTELG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR+ V + T + VGVGIA TKTLAKLANH AK+ Q TGGVVD+ + ++ ++ Sbjct: 125 RSIRSKVYRCTGIPVGVGIAPTKTLAKLANHTAKRLQAHTGGVVDICDPVKRDWVLRNTS 184 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR++ L+ M I + DLA D +RK F+VV+E+T REL G CL+L+E Sbjct: 185 VGEVWGIGRKMKAHLEGMQILSAKDLAMADPWMLRKTFSVVIEKTARELAGTACLELDEV 244 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +QEI CSR FG+R+T+ +++A+ +Y RA+EKLR++ C+ I I+T F + Sbjct: 245 EPPRQEICCSRMFGKRLTELGPIKEAVATYMMRASEKLRAQGSVCKKIRVSIRTGMFNPD 304 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y N A V+L PT D R + AT ++ I++ G RY KA V+L D G +L Sbjct: 305 EAKYANGALVQLPYPTNDVRLMTQYATEAVSRIFRPGFRYSKAEVLLMDICQPGEFTDDL 364 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F N P S++LM +D++N K GRGTL + W M+R +S YTTR L Sbjct: 365 FAVNQPV-SSDRLMAALDSINGKWGRGTLRTGSVPVTPDWGMRREQMSQSYTTRLDQLWV 423 Query: 421 VK 422 VK Sbjct: 424 VK 425 >UniRef50_Q5ZUT9 SOS mutagenesis and repair UmuC protein n=12 Tax=Legionellaceae RepID=Q5ZUT9_LEGPH Length = 431 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 201/423 (47%), Positives = 262/423 (61%), Gaps = 9/423 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE +F+P L KP++VLSNNDGCVIAR+ E KALGV+MG P+F K Sbjct: 14 MFALVDCNNFYVSCERLFKPALANKPILVLSNNDGCVIARSNEVKALGVQMGVPYFAVKA 73 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V FSSNY LYADMS RVMS LE+ P +EIYSIDEAF DL + +F Sbjct: 74 LCKQHKVHVFSSNYTLYADMSRRVMSVLEDNWPAIEIYSIDEAFLDLNTLPQSEH-DEFC 132 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ VL+ T + V +GI TKTLAKLANH AKK R + N+E Q ++ + Sbjct: 133 RKLQKIVLRHTGIPVSIGIGATKTLAKLANHIAKKELRTP-----VFNIENQYHWLAKIV 187 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR+ KKL GI T DLA D++ I+K F+VVL+RTV ELRG C L++F Sbjct: 188 VGEVWGIGRQWGKKLVQQGIYTAHDLAGMDLQLIKKLFSVVLQRTVLELRGVSCGSLQDF 247 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K I FG T+Y ++ QAI S+ ARA EKLR + +S FIKT+ F L+ Sbjct: 248 ESRKSIISSKS-FGSMQTEYSALAQAISSHCARAWEKLRHQKLMACHLSIFIKTNQFRLD 306 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y + KL+ PT D R +I A L I+++G YQK GV LGD + QL+L Sbjct: 307 LPQYQQTIGFKLINPTDDLRHLIRCAKLCLRKIFRSGFHYQKVGVYLGDLIEKNCLQLDL 366 Query: 361 FDDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 F+ + + +E+LM+V+D +N K GR TL A +G + W M+ SPRYTT S+L Sbjct: 367 FNQVSEKELNQTERLMSVLDEINTKYGRHTLRLAAEGHVKPWAMRAQSRSPRYTTSWSEL 426 Query: 419 LRV 421 V Sbjct: 427 PVV 429 >UniRef50_Q2W5K5 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=6 Tax=Proteobacteria RepID=Q2W5K5_MAGSA Length = 425 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 175/424 (41%), Positives = 241/424 (56%), Gaps = 4/424 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N FY SCE F P L GKPV+V+SNNDGC +AR+AEAKA+GV MG+P FK + Sbjct: 3 VYALVDCNNFYVSCERAFNPALEGKPVIVMSNNDGCAVARSAEAKAIGVGMGEPAFKLRH 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L G++ SSNY LY DMS RVMS L SP EIYSIDE F DL G+ +LT + Sbjct: 63 LVDSHGLIMLSSNYALYGDMSERVMSVLATFSPGAEIYSIDECFLDLDGMP-VDNLTAWS 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS-NLERQRKLMSAL 179 +++RATV + T + V VGI TKTLAKLAN AKK ++ GV+DLS + + Sbjct: 122 QQVRATVRRWTGIPVSVGIGTTKTLAKLANRLAKK-SKKANGVLDLSRDARWIEAALKQT 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV DVWGIGR+ + GI+T DL +I+K V RTV ELRG P L+ Sbjct: 181 PVGDVWGIGRQYAALCGVNGIRTAFDLTLQPDGWIKKTMGAVGLRTVMELRGTPVHTLDT 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K CSRSFG +T++ + A+ ++A+RAAEK+R E + F T F Sbjct: 241 APSDKHTTCCSRSFGASVTEFEQVHDAVMTFASRAAEKIRGEGLVSGAVQVFAYTDRFRP 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++P + ++ ++L PT + II AA + L + W+ G+ Y+KAGV++ D + Sbjct: 301 DQPQFSLNSMIRLSPPTSSTPHIIGAALKGLKSAWRDGYEYKKAGVIMLDLVRPEDIPRD 360 Query: 360 LFDDNAPRPGS-EQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 LF LM +D +N K G+G + F W+M+ + +P +TT D+ Sbjct: 361 LFSPPPESGARPTALMAAVDGINGKMGKGAVGFGLVPDDAPWKMRCSNRTPSFTTSWDDI 420 Query: 419 LRVK 422 VK Sbjct: 421 PVVK 424 >UniRef50_Q11V03 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=5 Tax=Bacteroidetes RepID=Q11V03_CYTH3 Length = 420 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 174/422 (41%), Positives = 249/422 (59%), Gaps = 2/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N FYASCE VF P L GKP+VVLSNNDGCVIAR+ EAKALG+ MG +F ++ Sbjct: 1 MYALIDCNNFYASCERVFNPSLNGKPIVVLSNNDGCVIARSNEAKALGIDMGGAYFMIEE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 ++ V FSSNY LY DMS RVM+TL E +P +E+YSIDE+F + G DL +G Sbjct: 61 ALKKHNVFVFSSNYTLYGDMSQRVMNTLAEFTPEIEVYSIDESFLNFEGFELLGDLKIYG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV + T + V +GIA TK LAKL+N AKK ++ V L + E+ + Sbjct: 121 TTIRNTVFRNTGIPVSIGIAPTKALAKLSNRIAKK-NKEYNHVCVLDSQEKIMAALKITT 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VD++WGIGR L GI+T D ++RK+ +VV R +EL+GE CL+LE Sbjct: 180 VDNIWGIGRAYHNFLLNHGIQTTYDFVQQPEEWVRKNMSVVGLRLHKELKGEKCLELELV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A KQ I SRSFG +TD +++A+ ++A+R A KLR + C + + T+ + Sbjct: 240 AMAKQNICTSRSFGRYLTDIDPIKEAMSNFASRCALKLRKDKSVCTLVQILLHTNKHKPD 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 +P Y + + L PT + ++I A+ R+LD +++ G+RY K GV++ + Q NL Sbjct: 300 QPQYFVNKVITLPVPTNSTIELIQASLRALDLVYKPGYRYMKCGVIVSGIVPEDRVQQNL 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FD R ++ T+MD LN G + G+ +QW +K LS Y+TR +++ Sbjct: 360 FD-TVDRSKHNKVTTIMDKLNKSLGADFVKVGSLGVTKQWHLKAEKLSQCYSTRWDEIIV 418 Query: 421 VK 422 +K Sbjct: 419 IK 420 >UniRef50_C6XDV2 DNA-directed DNA polymerase n=2 Tax=Methylovorus sp. SIP3-4 RepID=C6XDV2_METSD Length = 430 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 203/425 (47%), Positives = 272/425 (64%), Gaps = 7/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL-GVKMGDPWFKQK 59 +FAL D N+FYASCE VFRPDL GKPVVVLSNNDGCV+A++ EAKAL + M PWF+ + Sbjct: 10 VFALADANSFYASCEKVFRPDLEGKPVVVLSNNDGCVVAQSKEAKALLKLWMCRPWFEIE 69 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 + R GVV FSSNYELYA+MSNR M+TL + SPR E+YSIDE+F ++TG+ R+LTD+ Sbjct: 70 EEALRLGVVPFSSNYELYANMSNRFMTTLRQFSPRQEVYSIDESFLEMTGIN--RNLTDY 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMS 177 G+EI+ TV T L + VG +KTLAKLANH AKK Q Q GV DL+ L + ++ Sbjct: 128 GQEIKRTVKDWTGLPICVGFGHSKTLAKLANHCAKK-QPQWEGVCDLTALSERELEAILE 186 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPVD VWG+GRR+ L +G++ VL L D + +R F VVLERTVREL GE +++ Sbjct: 187 QLPVDTVWGVGRRLQASLATVGVENVLRLKRADPKRVRDKFGVVLERTVRELNGEVLIEM 246 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 EE P ++++ SRSFG R+ + +AI +A+ A+++LRS+ Y + FI+ SPF Sbjct: 247 EEMVPEAKQVMSSRSFGARVHQLKDLEEAISYHASNASQRLRSKGLYANAVYIFIQNSPF 306 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 E YYG S +V L PT ++ I AA L I++ G YQKAGVML + Q Sbjct: 307 DKAE-YYGPSCTVALPCPTDNTLQINKAALWLLKRIYRPGIYYQKAGVMLMGLVPKEGQQ 365 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 L + P S+ LM +D +N K +G L A +G+ + W M+R SP YT + Sbjct: 366 QELLGYSEATPKSQALMETLDRINHKYSKGALKVASEGMAKLWAMRRNFKSPNYTGDWEE 425 Query: 418 LLRVK 422 L +VK Sbjct: 426 LGKVK 430 >UniRef50_A9E9W4 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Kordia algicida OT-1 RepID=A9E9W4_9FLAO Length = 421 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 176/421 (41%), Positives = 255/421 (60%), Gaps = 4/421 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL DVN Y SCE VF P L GKPVVVLSNNDGCVI+R+ EAK LG+ MG + Sbjct: 1 MYALVDVNNMYCSCERVFNPKLIGKPVVVLSNNDGCVISRSNEAKKLGIPMGAVTHLFEK 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +F+ V +SSNYELY D+S+R+M L + +P +E+YSIDEAF G + DL D G Sbjct: 61 IFKDHHVQVYSSNYELYGDLSDRLMHVLSKFTPDIEVYSIDEAFLQFKGFEHF-DLNDLG 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EI+ T+LQ L + +GIA TK LAK+AN AKK+ ++TGGV + + +++K ++ L Sbjct: 120 IEIKETILQYIGLPISIGIAPTKALAKVANRIAKKFDKKTGGVYVMDSEHKRKKALNWLS 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGRR + KL+ GI + AD ++RK F+VV R ++L+G P L LEE Sbjct: 180 IEDVWGIGRRNASKLNRYGITKAIQFADAPDNWVRKEFSVVGLRLKKDLQGIPTLSLEEV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I +RSF + + +++ I SY A+EKLR + C I F+ ++ F + Sbjct: 240 ES-KKSIAVTRSFAKTKNNLQDLKEIIASYGCVASEKLRVQKSCCNLIMVFVHSNRFRKD 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NS VKL T S I A +++ +I++ G+ ++KAG+M+ QLN+ Sbjct: 299 LPQYNNSLVVKLPYSTNSSLIIAKYAKKAIQSIFKKGYEFKKAGIMVMGLVPDNAQQLNM 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+ +QLM+ +D LN+K G+ TL A Q + W M++ LS YTT +D+L Sbjct: 359 FEAC--NSDHKQLMSTIDRLNSKYGKNTLNIASQKLDSSWAMRQNNLSQNYTTDFNDILV 416 Query: 421 V 421 + Sbjct: 417 L 417 >UniRef50_D2QVG5 DNA-directed DNA polymerase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVG5_9SPHI Length = 422 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 174/423 (41%), Positives = 248/423 (58%), Gaps = 3/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL D N FY SCE F P L G+PVVVLSNNDG ++AR+ E K L V MG P+F+ + Sbjct: 1 MIALADCNNFYVSCERSFNPSLNGQPVVVLSNNDGSIVARSNEVKKLNVGMGQPFFEIER 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDF 119 L + G+ FSSNY LY MS RVM+ VE+YSIDEAF DL G + DLT F Sbjct: 61 LRQEHGIHVFSSNYVLYGSMSARVMAIFGRFVEDVEVYSIDEAFFDLNGYESIYPDLTTF 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +R+TV+Q T + + +GIA TKTLAK+AN AK+ Q GV LS E+ R+ + L Sbjct: 121 AHNLRSTVMQWTRIPISIGIAPTKTLAKVANWYAKR-QPDASGVCMLSTPEQIRQALEQL 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 VD++WGIGRR + L GIKT L+ + +++KHF + R V ELRGE C +E Sbjct: 180 SVDELWGIGRRYASFLKQNGIKTALEFSQCHDVWVQKHFTINGLRLVYELRGEVCRTVET 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + + SFGE + D P++ +A+ +Y ARA+EKLR + ++ F+ T+ F Sbjct: 240 QPSARKSVCVAPSFGELVGDRPTLYEALTNYVARASEKLRKQRLAAGAMTVFLHTNRFRA 299 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y NS S L PT ++ + A ++LD+I+++G+ YQK G++L + Sbjct: 300 AVGQYSNSRSFTLPVPTNLIPELSHYAIKALDSIYKSGYAYQKVGLILSALQPDTHQTPD 359 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 +F + P +L+ ++ LN+K GR + FA QG W+MK+ LSP YTT D++ Sbjct: 360 VF-EGELDPRLLKLLPTVERLNSKLGRDKVRFAAQGFNHLWKMKQRWLSPCYTTHWKDII 418 Query: 420 RVK 422 K Sbjct: 419 ITK 421 >UniRef50_A8ZLK7 DNA polymerase V, putative n=4 Tax=Cyanobacteria RepID=A8ZLK7_ACAM1 Length = 421 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 178/420 (42%), Positives = 258/420 (61%), Gaps = 6/420 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + LCD N+FYASCE+ P L KPVV+ SNNDG V+ NA+ KALG+ MG P FK + Sbjct: 5 LIGLCDCNSFYASCESALNPSLQHKPVVIASNNDGVVVTANAKGKALGLVMGVPLFKVQA 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V FSSNY LY D+S+RVM+ LE +P EIYSIDE F + + T + Sbjct: 65 LIKKHDVRVFSSNYALYGDLSSRVMTILETFTPEQEIYSIDECFMRMP---EFAEATTYS 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R TVLQ T + V +GI+ +KTLAK+ANH AKK Q+Q GGV D+S +++ P Sbjct: 122 HKVRKTVLQWTGIPVSIGISTSKTLAKIANHVAKK-QKQYGGVFDISAARNAEGILATFP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V D+WGIGR+ +K L + GI++ +L D + IRK VV R + ELRG CL LE Sbjct: 181 VADIWGIGRQYNKWLLSQGIESAKELRDANEGLIRKKMGVVGVRMIHELRGISCLPLELV 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A K+E SRSFG+ +T+ +++AI +YA+RAAEKLR + Q + F +TSPF Sbjct: 241 AKPKKETCVSRSFGQPVTELADLQEAIAAYASRAAEKLRHQEQVAEAMVVFARTSPFKSG 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y+ SA+V+ T + I+ +A ++ I++ G +QKAGV++ + Q +L Sbjct: 301 --YFRQSATVQFPIATNYTPTIVESARNAMARIYEPGREFQKAGVLMVGLCPETTIQGHL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 ++ + ++LM++MD +N + GRGTL A G++Q W+M+ SPRYTT ++L Sbjct: 359 WEKDEGWEKRKRLMSIMDEVNDRFGRGTLEIAASGLRQTWRMQSKWRSPRYTTCWAELPV 418 >UniRef50_B4WV07 ImpB/MucB/SamB family n=6 Tax=Synechococcus sp. PCC 7335 RepID=B4WV07_9SYNE Length = 425 Score = 423 bits (1087), Expect = e-117, Method: Composition-based stats. Identities = 203/427 (47%), Positives = 274/427 (64%), Gaps = 10/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FALCD N FY SCE VFRP+L VLSNNDGC IAR+ + K LGV MG PW K + Sbjct: 3 IFALCDCNQFYVSCERVFRPELETHACGVLSNNDGCFIARSPQLKTLGVPMGGPWHKYRS 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + V FSSNY LY DMS RVM+ L +P +E+YSIDE F L G + DLTD+G Sbjct: 63 LCTQNNVAVFSSNYALYGDMSQRVMACLGTFTPDMEVYSIDEVFLQLDGFAHL-DLTDYG 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ V Q T + +GVGI TKTLAK+AN+ AKK R T GV +L + Q +++ + Sbjct: 122 RQMQRKVHQWTGIPIGVGIGPTKTLAKVANYVAKK--RTTSGVFNLCDRTLQDQVLPTIA 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+D+WGIGRR + KL+A+GIKT DL + R IR+ FNVV ER V ELRG CL LEE Sbjct: 180 VEDIWGIGRRWALKLNAIGIKTAADLRAAEPRTIRQVFNVVAERIVHELRGTACLGLEEI 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P K+ I+CSRSFG+ I++ + +AI +AARAA KLR + C + F++T+ F + Sbjct: 240 QP-KKNIMCSRSFGQMISEKHLLLEAIADHAARAAGKLRGQGSRCGGLQVFLQTNRFRKH 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y NS + P++DSR+II+AA + +++ G Y K GVML D Q NL Sbjct: 299 EAQYSNSCTWSFTVPSRDSREIIHAARACMAQLYRPGFEYHKCGVMLVDLAPATTVQGNL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ-----QQWQMKRAMLSPRYTTRS 415 F + S++LM +MD+LNAK GRGT+ FA QG++ + W M++ SPRYTTR Sbjct: 359 FC-STDHEQSDELMALMDSLNAKMGRGTVRFAAQGLEKGKQRKSWGMRQQWRSPRYTTRL 417 Query: 416 SDLLRVK 422 ++++V+ Sbjct: 418 KEIVKVR 424 >UniRef50_A6ET82 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=4 Tax=Bacteroidetes RepID=A6ET82_9BACT Length = 421 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 178/424 (41%), Positives = 259/424 (61%), Gaps = 5/424 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL-GVKMGDPWFKQK 59 M AL D N+FYASCE VFRPDLWGKPVVVLSNNDGC+IA N EAKAL + M +P FK K Sbjct: 1 MIALVDCNSFYASCEQVFRPDLWGKPVVVLSNNDGCIIAANREAKALTDIAMFEPVFKIK 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 V FSSNY LY ++S RVM+TL SPRVE+YSIDE+F DL G + ++L + Sbjct: 61 KQLIAHNVTLFSSNYTLYGELSQRVMNTLYLFSPRVEVYSIDESFVDLHGFGH-KNLKHY 119 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G I+ T+ + T + GVGIA TK LAKLAN AKK + V + + ++ +++ Sbjct: 120 GNFIKETIFRNTGIPTGVGIAPTKVLAKLANKIAKK-GPEHDHVFVIDSDAKRIEILKTT 178 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + +WGIGR+ +KKL +GI T + + ++RK VV ER RELRGEPC+ + E Sbjct: 179 EIKSIWGIGRQQTKKLKEVGIHTAYQFTEMPLAWVRKEMTVVGERLWRELRGEPCMDMIE 238 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K+ I ++SFG ++ + +A Y + AE LR++ ++ F+ TS F++ Sbjct: 239 IPKPKKGIGTAKSFGRKLERLDLIEEACAYYISEVAEVLRAQKSCAMYLQVFLNTSSFSV 298 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 N+ Y N +V L PT ++ ++ A + L AI++ G+RY+K GV L + Q N Sbjct: 299 NDKQYRNKQTVTLAIPTNNTFTLVTEARKILKAIYKPGYRYKKVGVNLTGIIPEAYVQGN 358 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ-QQWQMKRAMLSPRYTTRSSDL 418 LF ++ ++LM + DTLN K G+G ++ G + ++W++ +A SPR+TT+ S++ Sbjct: 359 LF-ESPKTEKHKELMQLFDTLNYKYGKGKVFSGLTGTRMKEWELVKADRSPRFTTQWSEI 417 Query: 419 LRVK 422 L VK Sbjct: 418 LEVK 421 >UniRef50_C3X802 DNA-directed DNA polymerase n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X802_OXAFO Length = 420 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 179/421 (42%), Positives = 260/421 (61%), Gaps = 11/421 (2%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N F+ SCE VFRPDL GKPV+VLS+NDGC IAR+ EAKALG++MG+PWFK KDL Sbjct: 6 ALVDCNNFFVSCERVFRPDLEGKPVIVLSSNDGCAIARSNEAKALGIRMGEPWFKVKDLP 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 + VV FSSN+ LY+D+SNRV L + SP E+YS+DE+F DLTG D+ + Sbjct: 66 KYRDVVVFSSNFPLYSDLSNRVKYLLADFSPVQEVYSVDESFLDLTGFD---DVKERMVA 122 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK--LMSALP 180 IR TV +R + V VG+ TKTLAKLAN+ AKK R + GV + L Q+K L+ +P Sbjct: 123 IRETVAKRIGIPVCVGVGPTKTLAKLANYVAKKHPR-SKGVFHYNVLTEQQKSGLLKQIP 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 +D+VWG+GRR+++ L + GI+TV L + DIR +R + VV+ER + ELRG C+ + + Sbjct: 182 IDEVWGVGRRLNRSLISRGIETVYQLREADIRTMRSRYGVVMERLISELRGISCIDMVDV 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +P K++I+ SRSFG IT+ + AI +A + ++LR +H + F+ T F + Sbjct: 242 SPPKKQILSSRSFGGVITEIDDLENAIAFHATKIGKQLRRQHSIAGMVHVFLMTDRFRKD 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 +P Y S+ L+ T + +I A L I++ G+ Y+KAG + + + V ++ Sbjct: 302 KPQYHPHVSLPLIDATNSTIEINRYAMMGLHRIFRPGYEYRKAGACVSELSPESVFSPDM 361 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG-QGIQQQWQMKRAMLSPRYTTRSSDLL 419 F D P ++M VMD +N + G GTL + + ++W+ K +SPRYTT +L Sbjct: 362 FTD----PKRRKIMQVMDEINDRFGNGTLRLSQDDMMHRRWRPKVDRVSPRYTTSWDELA 417 Query: 420 R 420 Sbjct: 418 E 418 >UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCD0_DESAH Length = 422 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 177/423 (41%), Positives = 242/423 (57%), Gaps = 6/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF P L GKPV+VLSNNDGC +AR+ EAKALG+ MG P+F+ K Sbjct: 3 VFALVDCNNFYVSCERVFNPQLVGKPVIVLSNNDGCAVARSNEAKALGIAMGAPFFQIKA 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV FSSNY LY DMSNRVM TL +P +EIYSIDEAF DLT DL ++ Sbjct: 63 IVEGNGVRVFSSNYPLYGDMSNRVMQTLAPFTPAMEIYSIDEAFLDLTNF-AFTDLVNYA 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R TV + T + V +GIA TKTLAK+AN AKK + GV+DL+ + + P Sbjct: 122 RKMRNTVQRNTGIPVSIGIAPTKTLAKIANRIAKKSSK-ADGVLDLTPTSYRDLALEMTP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR++ GI+T LD IR + R REL GE C LE+ Sbjct: 181 IGDVWGIGRRLTPFFKYRGIRTALDFKSAAPSLIRGKMGINGIRMQRELAGESCYPLEDC 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ + SRSF T + + QA+ Y +R AEKLR + + ++ ++ T+ F+ Sbjct: 241 PARRKSVAVSRSFKTPATTFDELSQAVSLYISRGAEKLRHQGSFTETLTVYVMTNRFSP- 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + YY NS + L T + + ++I L I+Q+G Y KAG++ G QL+L Sbjct: 300 QSYYYNSKTAVLPTASNSTPELIKQGKGLLKQIFQSGKYYTKAGIVFSSLTRDGQVQLDL 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--QQQWQMKRAMLSPRYTTRSSDL 418 FD R S+ LM MD +NA+ G + +A G+ W+ + SP YTT + L Sbjct: 360 FD-TTDRSRSDNLMQAMDKINARMGSHAVRYAAMGLSGHPSWKGACSHRSPAYTTEWNQL 418 Query: 419 LRV 421 L + Sbjct: 419 LNI 421 >UniRef50_B4YK21 TumC n=1 Tax=Tetrathiobacter kashmirensis RepID=B4YK21_9BURK Length = 438 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 191/425 (44%), Positives = 259/425 (60%), Gaps = 9/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 + L D N FY SCE VFRP L GK ++ LSNNDGCVI+R EAKA+G+KMG PWF+ K L Sbjct: 18 YGLIDGNCFYCSCERVFRPFLKGKALISLSNNDGCVISRTDEAKAMGIKMGQPWFEIKHL 77 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + G++ SSN+ LY DMS+R+MS + SPR EIYSIDE+F D +G+ DL+ + + Sbjct: 78 EEK-GLMALSSNFALYGDMSDRMMSVISRFSPRQEIYSIDESFADFSGIT--EDLSAYSQ 134 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 +IRA VL+ T + VGI TKTLAKLANH AKK Q GV DL+ L+R + +M + Sbjct: 135 KIRAAVLRETGIPTCVGIGATKTLAKLANHIAKK-QPSWSGVCDLTQLDRYQLADIMKNI 193 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +VWGIGRRI+K+L+ +GI TV DLA R F++V+ +TV+ELRG + LEE Sbjct: 194 EVGEVWGIGRRIAKRLNELGIYTVFDLARMKPEAARAEFSIVVGKTVQELRGISRIDLEE 253 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A K++II SRSFG +TD ++ A+ + A A KLR ++ + FI+TSPF Sbjct: 254 VADPKKQIISSRSFGLPMTDLAGLQSALSEFVAIACNKLRGQNSVAASMQIFIRTSPFDK 313 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + YGNS V PT D+ A ++LDAIW+ G +Y+KAGVML D Q Sbjct: 314 GK-QYGNSRLVTPPYPTADNLVFTKHALKALDAIWRPGFKYKKAGVMLMDISPADAVQGE 372 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYTTRSSD 417 LF QLM +D +NA+ GRG++ G + W M++ S YTT + Sbjct: 373 LFPVEPEHGKRAQLMVALDGINARYGRGSVKTGSIGFHDREHWYMRQERKSQGYTTNWDE 432 Query: 418 LLRVK 422 +L + Sbjct: 433 VLIAR 437 >UniRef50_C6M791 Protein UmuC n=2 Tax=Neisseria RepID=C6M791_NEISI Length = 423 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 181/423 (42%), Positives = 246/423 (58%), Gaps = 9/423 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY SCE VFRP+L PVVVLSNNDGCV+AR+AEAKALG+KMG+P+F+ K Sbjct: 8 MFALIDGNSFYCSCERVFRPELKNVPVVVLSNNDGCVVARSAEAKALGIKMGEPYFRVKH 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + FSSNYELYAD+S R+M T+ P VEIYSIDE F + N D G Sbjct: 68 LVSQGRLKAFSSNYELYADLSRRMMETIAGCVPAVEIYSIDECFATMA---NIGDHAGLG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL--MSA 178 REIR VLQ + VGIA TKTLAK N+ AKK+ GGVV ++ +L + + Sbjct: 125 REIRRRVLQWVGIPTCVGIAPTKTLAKFCNYLAKKYPSHFGGVVVWTDWTESIRLRALRS 184 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 V ++WGIG +I+ KL A GI T LD D +R + V +ERT RE++G C L Sbjct: 185 EAVSEIWGIGNKIAAKLAAQGIFTALDFVLADTATLRLRYGVTIERTQREMQGIVCDGLH 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 KQ ++ SRSFG RI +++ AI + + AE LR + +S F+ T F Sbjct: 245 PKPAPKQNLVRSRSFGVRIDTLDALQAAITHHISSGAETLRKDKLTASSVSVFLHTDFFK 304 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 +EP Y NS ++ L+ PT D+ + +AA + L I+++G+ Y+K G+ L Q Sbjct: 305 ESEPQYHNSQTISLIVPTSDTVLLNHAAQKILATIFRSGYLYKKCGIELHGLKPAEQIQA 364 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +L+ P +M D +N + G+G L A + + W+M R LS YTTR +DL Sbjct: 365 DLWQSVTNNP----VMEAWDKINRQYGKGRLKLASELLANNWEMNRDRLSQCYTTRFTDL 420 Query: 419 LRV 421 V Sbjct: 421 PIV 423 >UniRef50_A1BFA1 DNA-directed DNA polymerase n=7 Tax=Chlorobiaceae RepID=A1BFA1_CHLPD Length = 426 Score = 417 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 174/427 (40%), Positives = 247/427 (57%), Gaps = 9/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L +PVVVLSNNDGC IAR+ EAKA+G+ MGDP +K ++ Sbjct: 1 MFALVDCNNFYVSCERVFNPGLQNRPVVVLSNNDGCFIARSEEAKAIGLAMGDPAYKNRE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R+ V +S+N+ LY DMS RVM TLE L+P +EIYSIDE F DL G +L D+ Sbjct: 61 LLRQHNVAVYSANFPLYGDMSARVMKTLETLAPDLEIYSIDECFLDLGGFGKF-NLADYA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R TV + T + V +GI TKT+AK AN AKK GGV LS R+ + A+ Sbjct: 120 AATRKTVHRNTGIPVSIGIGATKTIAKAANRMAKK-NLSLGGVCILSTAAATREALGAMA 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ +WGIG + + L I T LD AD +++KH ++ R +EL G CL LE Sbjct: 179 VEHIWGIGSQYAALLHKQHIHTALDFADAPTHWVQKHLHITGARVQQELNGHSCLPLELV 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I SRSFG ++ Y + AI + + A KLR E ++ F+ TSPF Sbjct: 239 RSRKQSICTSRSFGSLVSSYEEIGYAIAHFTSTCAFKLRREGSRASLLTVFLYTSPFIEK 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA---Q 357 E Y + + L P+ ++ ++ AA L +I+++G+ Y+KAGV++ + A Sbjct: 299 ENRYRGTRTFALPFPSNNTLELQKAAQLLLASIYRSGYGYKKAGVLVSGITDEKGAAMTT 358 Query: 358 LNLFDDNAPRPGSEQ---LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 L+LFD++ ++ LM +D +N++ G+GTL A W+ ++ LSP YTTR Sbjct: 359 LSLFDNDPLPRNQKRDMKLMETLDAINSRFGQGTLRTASD-TNSGWKQRQEKLSPHYTTR 417 Query: 415 SSDLLRV 421 +D++ + Sbjct: 418 WNDIIEI 424 >UniRef50_C7RB82 DNA-directed DNA polymerase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB82_KANKD Length = 422 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 169/420 (40%), Positives = 254/420 (60%), Gaps = 6/420 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +ALCDVN+FY SCE +FRPDL+GKPV+VLSNNDGC+IA + EAKALG+ M P+ + + + Sbjct: 8 YALCDVNSFYVSCERMFRPDLYGKPVIVLSNNDGCIIALSDEAKALGIPMAAPYHEARPI 67 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ V CFSSNY LY D+S R LE+ +V YS+DE+F G +N DLT + Sbjct: 68 IQKHKVTCFSSNYGLYGDISKRFNWILEQHCDQVAPYSVDESFMRFEGFQN--DLTQRAQ 125 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR+ + + L V +G+ TKTLAK+ANH AKK + T GVVDLSN ++ + + V Sbjct: 126 AIRSELWRCLSLPVCIGLGPTKTLAKVANHFAKKHKTTTHGVVDLSNPATRKWALKQIAV 185 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +WGIGR++SKKL I T DL + D + +++ F+V +ERT+ ELRG+PCL+ E Sbjct: 186 AKIWGIGRQLSKKLILQDIHTAWDLHNADYKTLQRMFSVNMERTILELRGQPCLKFSELP 245 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 K+ I+ SRSFG+ ++ Y +++A+ + +R EKLR++ I+ F+ Sbjct: 246 EPKKSILNSRSFGKPLSIYSDLKEAVAHHTSRCCEKLRNQSSLASSITVFLYGQR-KELV 304 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 + S +++L PT D+ + A + L I +AG Y+KAG+ML Q ++F Sbjct: 305 YHNRPSVTLQLPEPTDDTSIFLQAVEQGLRHIVKAGESYKKAGIMLNGIVDSHGYQPDIF 364 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 + RP +LM +D +N + G+ T+ F G + W M+ SP YT+R D+L++ Sbjct: 365 EGVPQRP---ELMESLDKINRRYGQDTVKFGSLGFAKNWAMRANSCSPHYTSRWQDILKL 421 >UniRef50_C7I5S1 DNA-directed DNA polymerase n=2 Tax=Proteobacteria RepID=C7I5S1_THIIN Length = 431 Score = 416 bits (1069), Expect = e-115, Method: Composition-based stats. Identities = 193/431 (44%), Positives = 249/431 (57%), Gaps = 14/431 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASCE VF+P+L GKP+VVLSNNDGC IAR+ EAKALGVKMG P F+ Sbjct: 1 MFALIDGNNFYASCECVFQPELRGKPLVVLSNNDGCAIARSDEAKALGVKMGQPIFEVPP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR + S+N+ LY DMS RV++ L E +PRVE YSIDE+F DLTG+ F Sbjct: 61 AVRR-QLAIRSANFTLYGDMSARVLAILREAAPRVESYSIDESFLDLTGILKPGSREAFC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGG-------VVDLSNLERQ- 172 RE+R V + T + VGI TKTLAKL NH AK R+ G V DLS L Q Sbjct: 120 RELRERVHRWTGIPNCVGIGATKTLAKLGNHVAKSAVRKPGSYPAELGRVADLSALSPQG 179 Query: 173 -RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 +++A PV ++WG+GRR + KL +M I+T L L D I F VVL RT REL Sbjct: 180 LSAVLAATPVGELWGVGRRWAAKLRSMNIETALQLRDAPRALILDSFGVVLSRTQRELAS 239 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 EPCL LEE P +Q+I+ SRSFGER+ D+ S+ +A ++A RA EKLR+ + F Sbjct: 240 EPCLALEEVEPDRQQIMVSRSFGERVEDHQSIGEAFATFAMRACEKLRARGLVASAVGIF 299 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 T F + + L T DSR ++N + + G+ Y+KAGV L D Sbjct: 300 ANTDHFRPELHQHHPQRTTDLPRATSDSRVVLNTIRQMQRGFLKDGYAYKKAGVWLMDLS 359 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--QQQWQMKRAMLSP 409 Q +LF G ++LM +D +N + GRGT+ G + QW M++A LS Sbjct: 360 RPDQLQPDLFS--TITIGDDKLMQTLDAINRRYGRGTVGLGATGWRERPQWGMRQATLSS 417 Query: 410 RYTTRSSDLLR 420 R+TT DL R Sbjct: 418 RFTTSLRDLPR 428 >UniRef50_C6BX75 DNA-directed DNA polymerase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BX75_DESAD Length = 423 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 175/423 (41%), Positives = 248/423 (58%), Gaps = 5/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE +FRP++ +PVVVLSNNDGCVI+R+ EAK +GV MG P +K + Sbjct: 3 IFALVDCNNFYVSCERLFRPEIKHRPVVVLSNNDGCVISRSQEAKDIGVPMGAPAYKYQS 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 F + V FSSNY LY D+S RV +TL L+P +E+YSIDE+F + R+L G Sbjct: 63 FFLQNNVEIFSSNYALYGDLSQRVTATLASLTPDLEVYSIDESFLEFPP-CMLRELPSIG 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +EIR +L+ T + V VG TKTLAK+A+ AKK+ QT G L +L+ +P Sbjct: 122 KEIRTRILKWTGIPVSVGFGSTKTLAKVASRFAKKY-PQTEGTFSLCGRNDLDRLLDKVP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V DVWGIGRR K+L A G+ T D +++K+ +V T ELRG PC +L+ Sbjct: 181 VTDVWGIGRRHGKRLIARGVSTARTFKDLPNLWLKKNMSVTGLHTALELRGTPCFELDNS 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSFG +T + +++ +Y ARA EKLR + + ++ T+ F N Sbjct: 241 PKPKKTISSSRSFGRPVTALSDLEESVAAYVARAGEKLREQQSLTNGVMVYLTTNRFN-N 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NSA+ L T + ++IN + + +I++ G Y+K GV+L D + Q NL Sbjct: 300 LPQYSNSATRMLPIATDYTPELINTGLQCIRSIYKEGFSYKKTGVVLLDLCGKYNRQCNL 359 Query: 361 --FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 D A E +M ++D+ N + GR TL +A +G++Q WQM R SP YTT DL Sbjct: 360 LELDHKAESAKKEAIMNLLDSANTRFGRRTLSYASEGLEQPWQMNRKYKSPSYTTSWDDL 419 Query: 419 LRV 421 ++ Sbjct: 420 PKI 422 >UniRef50_C8X192 DNA-directed DNA polymerase n=2 Tax=Deltaproteobacteria RepID=C8X192_DESRD Length = 437 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 179/423 (42%), Positives = 240/423 (56%), Gaps = 5/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N FY SCE VF P L G+PVVVLSNNDGC+IAR+ EAK LG+ MG+P+ K++ Sbjct: 17 VYALVDCNNFYVSCERVFAPRLQGRPVVVLSNNDGCIIARSEEAKTLGIAMGEPFHKREP 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR GV FSSNY LY DMS RVM L +P EIYSIDE F + DL Sbjct: 77 FLRREGVNVFSSNYPLYGDMSARVMEALSRFTPHQEIYSIDECFLGFVPAPDA-DLLCTA 135 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR TV Q T + V VG+A TKTLAK+AN AKK + V L + + ++ Sbjct: 136 RHIRETVRQWTGIPVSVGLAPTKTLAKIANRCAKKD-PASKNVCLLGDTTTIEQTLARTD 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+D+WGIGRR ++ L G+ T LDL ++R H VV +TV EL +PC LE Sbjct: 195 VEDIWGIGRRYARFLHTRGVDTGLDLVRMPRDWVRNHLTVVGLQTVLELDRQPCFVLETT 254 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I+CSRSFG RI D ++ +A+ + RAAE+LR++ + ++T+ F Sbjct: 255 PAPAKSIVCSRSFGRRIRDKQALGEALARHIQRAAERLRAKGLLAHTVRVALETNRFQPG 314 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y LL PT + + AA LD ++++G YQK GV L + Q +L Sbjct: 315 -PQYAARRCQTLLHPTDATPALHKAAQGLLDVLYRSGFAYQKIGVTLLELVPHNHRQASL 373 Query: 361 FDDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDL 418 F A G ++ LM +D LN GR T+ +A G+ QQW M++ +SPRYTT +L Sbjct: 374 FPPAAAETGRQRDLMRTVDHLNTVYGRDTVTWAASGLGPQQWHMRQNHVSPRYTTAWDEL 433 Query: 419 LRV 421 V Sbjct: 434 PCV 436 >UniRef50_B5JVF1 UmuC protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVF1_9GAMM Length = 420 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 176/422 (41%), Positives = 258/422 (61%), Gaps = 5/422 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL D N FYASCE VFRP L G+P+ VLSNNDGC+IAR+ E KALGV MG P F+ Sbjct: 1 MLALVDCNNFYASCERVFRPKLEGRPIAVLSNNDGCIIARSQETKALGVPMGAPLFQWLP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + G FS+N+ LY D+SNRVM+ L++ PR+E+YSIDEAF DL+ V C +L+DF Sbjct: 61 VLEENGAHIFSANFALYGDLSNRVMAVLKDECPRLEVYSIDEAFLDLSMVPLC-ELSDFC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R +R V + T + V +G+A +KTLAKLANH AKK + G+ + E+ R MS+LP Sbjct: 120 RALREKVRRWTGVPVSIGVAPSKTLAKLANHVAKKH-PSSDGIWLMRGTEKNR--MSSLP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+GRR+ + + GI TV L + + + RK +V +ERTVRELRGE C ++ Sbjct: 177 VSEVWGVGRRLGARFEGFGINTVWQLRNAETAWARKVASVNMERTVRELRGERCFDIDST 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q+I+ SRSFG+ +T + A+ ++A RA EKLR + + I F T+PF + Sbjct: 237 EEPRQQILVSRSFGQMVTSKDELASALSNFAWRAGEKLRRQGARTQSIRLFAHTNPFRKD 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y ++ T + A + LD +++ G+ Y+KAGV+L + +G+ Q +L Sbjct: 297 MPRYCGRVRIQFHQATDSPPVLAKAVAQGLDQVYRHGYHYKKAGVVLDELLPRGIVQWSL 356 Query: 361 FDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 + + R + VMD +N K G G + A QG+ + W+M+++ SP +TT ++L Sbjct: 357 LSEESERCEKKSHIGGVMDAINDKMGTGKIRMASQGLGENWKMQQSRQSPSWTTDWANLK 416 Query: 420 RV 421 + Sbjct: 417 TI 418 >UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved in DNA repair/SOS mutagenesis and repair n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QJ9_CYTH3 Length = 419 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 179/422 (42%), Positives = 248/422 (58%), Gaps = 9/422 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N FY SCE VFRPDL +PVVVLSNNDGCVI+R+ EAKA+GVKMG+P+FK K+ Sbjct: 1 MYALIDCNCFYVSCERVFRPDLRQQPVVVLSNNDGCVISRSDEAKAIGVKMGEPFFKMKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R V FSSNY LY D+S+RVM TL + P +E+YSIDEAF L DL G Sbjct: 61 LVRNGKVTAFSSNYTLYGDLSDRVMKTLASIVPDIEVYSIDEAFLHLNESHT--DLETLG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV Q T + VGVGIA TKTLAKLAN +KK G V + + ++ ++A Sbjct: 119 HTIRNTVKQHTGIPVGVGIAPTKTLAKLANRLSKK-----TGGVHIIYPDNIQEKLNACA 173 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR +K+L A + T+ + ++R+HF+V+ RT +EL+G PC+ +E+ Sbjct: 174 LQDVWGIGRRNAKRLQANYVDTIEQFVNQREEWVRQHFSVIGLRTYKELKGIPCIDMEDE 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSFGE + S+++AI ++AA AEKLR + + + S F Sbjct: 234 LTEKKSICTSRSFGELQNTFASIQEAIATHAASCAEKLRKQKCAAAGMYVSLSKSRFTDQ 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +KL T ++ +I A++ L+ +++ Y+K GV + D + QLNL Sbjct: 294 EGDKYFGTYIKLPQATNNTATLIQYASKGLELLFKKDVYYKKCGVTVIDIVPEEKIQLNL 353 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAMLSPRYTTRSSDLL 419 F+ L +D LN K G+ L A QG W+++ +SP YTTR ++L Sbjct: 354 FEP-QKNARLHALEDTIDKLNQKLGKNVLRQAIQGNDNNTWKLRCENMSPNYTTRIGEIL 412 Query: 420 RV 421 V Sbjct: 413 VV 414 >UniRef50_D0J481 DNA-directed DNA polymerase n=4 Tax=cellular organisms RepID=D0J481_COMTE Length = 432 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 194/436 (44%), Positives = 265/436 (60%), Gaps = 19/436 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE FRP L G PVVVLSNNDGC I+R+ EAKALGVKMG P+F+ +D Sbjct: 1 MFALIDGNNFYVSCERAFRPALQGIPVVVLSNNDGCAISRSDEAKALGVKMGQPFFQLRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFC-DLTGVRNCRDLTDF 119 L G+VC S+N+ELY DMS+R+MS L P EIYSIDE+F DL GVR DLT Sbjct: 61 LVEHKGLVCLSANFELYGDMSDRMMSLAAGLGPTQEIYSIDESFIGDLDGVR---DLTRR 117 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGG-------VVDLSNLERQ 172 IRA +L+ T + VG+A TKTLAKL NH AK +R+ G V + + L Q Sbjct: 118 AFAIRARILKWTGIPTCVGLAPTKTLAKLCNHVAKDSERKPGSYPAELQRVCNWAELSEQ 177 Query: 173 R--KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 + ++ ++WG+GRRIS +L G+ T LDLA R ++VVLERTVREL+ Sbjct: 178 QRTDILGRTAAGEIWGVGRRISVQLAEQGVLTALDLARLPAHAARDGWSVVLERTVRELQ 237 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G C+ LE K++I C+RSFG IT P + +A+ +A RAAEKLR+ + Sbjct: 238 GVSCMSLETAPAAKKQIACTRSFGHPITTLPPLIEAVSEFATRAAEKLRAGGLRAGALHV 297 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 F+ TSPF +Y +A ++L P+ D++ ++NAA L +I+Q G++ KAGVML D Sbjct: 298 FVHTSPFRPGRRFY-ETAVIQLQPPSSDTKALVNAAVHGLRSIYQPGYQLSKAGVMLQDL 356 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ----WQMKRAM 406 V Q +L R S +LM MD +N + G+GT++ A G+ +Q W+M++ Sbjct: 357 CPTEVQQGDLLFQEPCRDQS-KLMEAMDKINKRFGKGTVHVASTGVPEQDESGWRMRQER 415 Query: 407 LSPRYTTRSSDLLRVK 422 +PRYTT+ ++ + Sbjct: 416 RTPRYTTKIDEIPIAR 431 >UniRef50_D0KZ56 DNA-directed DNA polymerase n=12 Tax=root RepID=D0KZ56_HALNC Length = 439 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 205/423 (48%), Positives = 276/423 (65%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF P L +PVVVLSNNDGC +AR+AEAKALG+ MG PWF+ + Sbjct: 17 VFALVDGNNFYVSCERVFNPALEARPVVVLSNNDGCAVARSAEAKALGIAMGQPWFQIQS 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + G++ SSNYELYADMSNR+M L + SPR E+YSIDE F DL G+ DLT Sbjct: 77 MAQSHGLIALSSNYELYADMSNRMMRILADFSPRQEVYSIDECFLDLRGMDV--DLTLLA 134 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER--QRKLMSA 178 +R V Q + VG+GI ++KTLAKLANH AKK Q Q GV DL+ LE Q +LM+ Sbjct: 135 HGMRQRVAQWIGIPVGIGIGESKTLAKLANHLAKK-QPQWQGVCDLTTLEESAQDRLMAC 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 + V DVWG+GRR+ ++L+A GI T LDL D I++ F+VVL RTVREL+G CL LE Sbjct: 194 VDVGDVWGVGRRLKEQLNARGIVTALDLKRADPVIIQRQFSVVLARTVRELQGISCLPLE 253 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 +Q+II SRSFG+ + P +RQAI ++ +RAAEKLR++ + + FI+TSPF+ Sbjct: 254 SMVAPRQQIIVSRSFGKPVWYLPELRQAITAHMSRAAEKLRTQASVAQMVQVFIRTSPFS 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-AQ 357 P+Y ++ L + D+R ++ A + L I++AG+ YQK GV+L D +G A+ Sbjct: 314 A-RPFYSQGITLPLAAASDDTRLLVKIAQQGLTRIYRAGYDYQKVGVLLMDIQPKGQGAR 372 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 +LF D ++QLM +D++NA+ G+ TL AG+G Q W MKR +P YTT Sbjct: 373 TDLFHDAQHDRRTDQLMQTLDSINARMGKHTLKLAGEGFVQPWAMKRNRHTPAYTTNIRQ 432 Query: 418 LLR 420 L R Sbjct: 433 LAR 435 >UniRef50_A5FIG7 DNA-directed DNA polymerase n=10 Tax=cellular organisms RepID=A5FIG7_FLAJ1 Length = 446 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 172/422 (40%), Positives = 255/422 (60%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASC+ VF P L KP+V+LSNNDGCVI+R+ EAKALG+ M P FK + Sbjct: 28 MFALVDCNNFYASCQRVFEPHLREKPIVILSNNDGCVISRSDEAKALGIPMAIPAFKYES 87 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +F+ + +SSNY LY DMSNRVM+ L +P +EIYSIDEAF +G + D+ G Sbjct: 88 VFKEKNIFVYSSNYPLYGDMSNRVMNLLRTYTPEIEIYSIDEAFLKFSGY-DLFDMNTLG 146 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R V Q T + V +G A TK LAK+AN A+K+ +T V + + E++ K + Sbjct: 147 LKMRKEVTQGTGIPVSIGFASTKALAKMANKIARKFADRTQNVHCIDSEEKRVKALKWSK 206 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGR+ +K+L A I T + ++RK +VV R EL G+P L+LEE Sbjct: 207 IEDVWGIGRKHAKRLKAKKINTAYEFTQLPDAWVRKEMSVVGLRLKHELEGKPTLELEE- 265 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A ++ I +RSF +R T Y + + I ++ A AEKLR ++ +C ++ FI+TS Sbjct: 266 AADRKMIATTRSFEKRYTSYEEISERISTFTASCAEKLRRQNCHCNMVTVFIQTSFIKNE 325 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +Y S ++ PT + ++ AA + AI++ G+RY+KAGV++ QLNL Sbjct: 326 ESHYSRSITITTDFPTNSTIELNAAAQKGFKAIFKKGYRYKKAGVIVMGLTPNSETQLNL 385 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+ P + LM+V+D +N G + F Q + +QW+MK+ LSP+++T D++ Sbjct: 386 FE--TSNPKHQPLMSVIDKMNQNYGNNKIKFGVQSLGRQWKMKQNRLSPKFSTSLKDVIT 443 Query: 421 VK 422 VK Sbjct: 444 VK 445 >UniRef50_Q1QXT4 DNA-directed DNA polymerase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXT4_CHRSD Length = 426 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 180/424 (42%), Positives = 244/424 (57%), Gaps = 4/424 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D N FY SCE VF+P L G PV V+SNNDGCVIAR+ E KALGV+MG P F+ ++ Sbjct: 1 MIGLVDCNNFYVSCERVFQPRLEGVPVGVMSNNDGCVIARSNELKALGVEMGTPAFELQE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + SSNYELY DMS RV LEE S VE YSIDE F G + Sbjct: 61 WVNQGRIHLLSSNYELYGDMSARVREVLEEFSAGVEPYSIDEMFVRFDGF-DAATTQALA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R + V Q T + V VG+A T+TLAKLAN AAKK G V +N + R+L+ Sbjct: 120 RTLYRNVRQFTGIPVCVGVAPTRTLAKLANRAAKKLPEYGGTCVMHANGDDTRRLLEHTA 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + D+WG+G+R+ ++L GIKT DL D + IR+ F+V LERTVREL+G PC++L + Sbjct: 180 LGDIWGVGQRLVERLALQGIKTAWDLRQADPKAIRQRFSVTLERTVRELQGTPCIELHDA 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I+ SRSFG D ++ AI +A R AEKLR + + R + F+KT+ + Sbjct: 240 DRPRDRIMTSRSFGRLTGDLGDLQDAIRQHAQRGAEKLRRQDSHARAVLVFLKTNRHRPD 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y S ++L PT DSR I+ AA + L+ I++ G+R+ K GVML D QL+L Sbjct: 300 LPQYSPSIVIELPEPTDDSRPILAAARQGLETIYRRGYRFMKGGVMLLDLVDANREQLSL 359 Query: 361 FDDNAPRPGSEQ---LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 D E+ LM +D LN K G+GT+ W ++ A +PR+TT+ + Sbjct: 360 LDTPEREAQRERDHKLMAALDALNGKMGKGTVRLGVPRQNAAWHLRCAHRTPRWTTQWRE 419 Query: 418 LLRV 421 L R+ Sbjct: 420 LPRI 423 >UniRef50_C0VGI8 Nucleotidyltransferase/DNA polymerase n=4 Tax=Acinetobacter RepID=C0VGI8_9GAMM Length = 432 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 171/427 (40%), Positives = 249/427 (58%), Gaps = 8/427 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL DVN Y SCE VF P L +PVVVLSNNDGCV++R+ EAK LG++M P+F+ ++ Sbjct: 7 IFALVDVNNAYVSCERVFNPKLENRPVVVLSNNDGCVVSRSYEAKQLGIRMAVPFFQIEE 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVRNCRDLTD 118 + R+ V FSSNY LYA+MS R M+ L E+YSIDE F +LT ++ DL+ Sbjct: 67 IIRQHHVAVFSSNYALYAEMSRRFMNILASFVDPCEQEVYSIDECFLELTAYQHHYDLSK 126 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE--RQRKLM 176 + +I +TV + L +GI +KT AKLANH AK GV + + + L+ Sbjct: 127 YAFQILSTVKKWLGLPCCIGIGYSKTQAKLANHLAKTHA-SFNGVCNFVDEDPCIIEDLL 185 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 PV +VWG+GR+I ++L+ M I +V+DL TD + + KHF+VVLE TV+EL+G CL+ Sbjct: 186 MHTPVGEVWGVGRKIRQRLEKMNIYSVMDLLQTDPKRMGKHFSVVLENTVKELQGVACLE 245 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 +E+ +Q+I+ SRSFG+ I D S+ A+ +A RA E+LR + C+ + I+T+ Sbjct: 246 IEDVISDRQQILSSRSFGQPIEDKNSLSGALTEFALRAVERLRKQKLLCKAVGISIRTNR 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F + YY V L+ + D I+ A + LD I+Q GHRY+KA V+L D Q Sbjct: 306 FNKDA-YYRPFTVVYLVDYSDDRLVIMKAVQQGLDRIYQVGHRYKKAEVILLDIIPQHRH 364 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG--QGIQQQWQMKRAMLSPRYTTR 414 ++LF + + L D +N + GR + F + W M + SP Y T+ Sbjct: 365 AVDLFYNTEEMLTRQNLSVAFDEINERFGRDVMTFGRLIGPQGRAWGMTQNHKSPSYLTK 424 Query: 415 SSDLLRV 421 D+LRV Sbjct: 425 WEDVLRV 431 >UniRef50_C6XEM8 DNA-directed DNA polymerase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEM8_METSD Length = 425 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 191/424 (45%), Positives = 254/424 (59%), Gaps = 6/424 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL DVNA Y SC VF P L GK +VL+NNDGC ++RN AK LG+KMG+PWF+ K Sbjct: 5 IALVDVNAMYWSCHRVFNPSLEGKAGIVLTNNDGCAVSRNDLAKQLGIKMGEPWFQIKAN 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + VV FSS Y LYA MS R + L E SP EIYSIDE F DLTG+R + G Sbjct: 65 PKYKDVVAFSSTYALYASMSKRFTNLLAEFSPHQEIYSIDECFLDLTGMRGRQ--IQRGL 122 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 IR + L V VGI TKTLAKLANH AKK+ GVVDL+ E + + + L Sbjct: 123 NIRHRIKNEVGLPVCVGIGSTKTLAKLANHIAKKF-PHFEGVVDLNEWEPHQMVAMFTML 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V VWG+GRR +++L A+ +K+V+DL D FIR+ F+VVLERTVREL GE CL LE Sbjct: 182 DVGQVWGVGRRYAERLAALDMKSVMDLKLADPEFIRQQFSVVLERTVRELNGEACLDLEA 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K++II SRSFG +I D P++ A+ S+ +RAAEKLR ++ Y IS ++T+ F Sbjct: 242 VREDKKQIISSRSFGRQIEDLPALVNAVSSFVSRAAEKLRLQNSYAGVISVEVETNRFNP 301 Query: 300 NE-PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + YG A ++L PT D+ + + A L I++ G RYQ+AG+ML + G Q+ Sbjct: 302 DPYSKYGKRACIRLPAPTDDTLKLNHVAQWILKKIYKPGFRYQRAGIMLDEIVPAGGGQV 361 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +LF + L V+D +N++ G+ + G W MK+ +LSP YTTR DL Sbjct: 362 DLFGYQPAIGKRDNLSAVVDEINSRMGKNAVRVGTMGFSMDWDMKQDLLSPFYTTRIEDL 421 Query: 419 LRVK 422 + Sbjct: 422 PVAR 425 >UniRef50_Q15TC7 DNA-directed DNA polymerase n=25 Tax=Proteobacteria RepID=Q15TC7_PSEA6 Length = 421 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 175/425 (41%), Positives = 242/425 (56%), Gaps = 8/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGV-KMGDPWFKQK 59 MFALCD N+ YASCE VF P + KPVVVL+NNDGC+ A AK +GV K P+F+ K Sbjct: 1 MFALCDANSMYASCEKVFDPSIRNKPVVVLTNNDGCICAACGIAKRMGVGKKFVPYFQVK 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL--TGVRNCRDLT 117 GVV SSNYELYAD+S R+M T +P + +YSIDE F Sbjct: 61 KELEAAGVVIRSSNYELYADLSQRMMDTCARFAPDINVYSIDECFLYYGKDATAPQDGWN 120 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + IR TV + L + VGI T TLAK+ANH A K GV L N + ++ ++ Sbjct: 121 NLANSIRKTVWREVRLPICVGIGPTPTLAKVANH-AAKNVSGFIGVAVLDNEDARKHVLK 179 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V DVWGIG+R+ KL+A+GI T +LA+ D IRK F++++E TVREL GE Sbjct: 180 QLAVTDVWGIGKRLGVKLNALGIHTAWELANRDPSHIRKAFSIIVENTVRELNGEIRHCW 239 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E K+EI +RSFG R+TDY +R A+ +A + KLR + ++ F SP Sbjct: 240 ETVRGAKKEIYSTRSFGSRVTDYDELRAALAGHAETVSVKLRKQKSVTSSMTLFATNSPH 299 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 N Y S + PT D+R+I++ ++ ++Q G Y K GV L D Q + Q Sbjct: 300 D-NGGYVRRSFFHRFTVPTNDTRNILHVIDSAMSQLFQPGVHYYKCGVGLMDLHEQDLYQ 358 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 +LF P + +LM MD +N++ GR T+ A +G +Q++ MKRA LSP+YTT+ D Sbjct: 359 YDLF---NPSNDNSRLMACMDNINSRYGRSTVQMAAKGFEQRFSMKRAFLSPQYTTQWRD 415 Query: 418 LLRVK 422 + ++K Sbjct: 416 IPKIK 420 >UniRef50_Q19NE6 UV protection and repair protein n=9 Tax=Enterobacteriaceae RepID=Q19NE6_ECOK1 Length = 419 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 200/422 (47%), Positives = 273/422 (64%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+ D+N YA+ E P L KP+++ SNND VIA N AK++G+K G P FK +D Sbjct: 1 MYMHVDINGAYAAFECAMDPKLSKKPLIIASNNDSSVIAMNKLAKSVGIKRGTPIFKCRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ + SSN+ LY D SNR TLE +P+ YSIDE F L + D D+G Sbjct: 61 LIQQHRIEVRSSNFTLYEDYSNRFHETLESFAPQSSRYSIDENFMLLKNMNKIIDYEDYG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR+T+L LT GVG + TKTLAKL +A+K+W TGGVV L++ R RKL+ + Sbjct: 121 RLIRSTLLHNLSLTCGVGCSSTKTLAKLCTYASKRWA-ATGGVVVLTDQARIRKLLGLIS 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++WGIG++IS++L A GI T D ++D+RF+RK F V +ERT REL GEPC +L E Sbjct: 180 TREIWGIGQKISERLSAFGIITAGDFYNSDVRFLRKSFGVEIERTWRELHGEPCFRLHES 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +Q+II SRSFG+R+ + + +A+ + ARAAE+LR + + R I+ FI++S +A Sbjct: 240 PPVRQQIIVSRSFGQRLNEIGKLHEAVSFFTARAAEQLRKDGSWTRQITVFIQSSNYAQG 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y N L T TQD+RD+++AA L+ I++ G Y KAGVML + G QL+L Sbjct: 300 ENRYSNCGIEPL-TATQDTRDLVDAAMTILNRIYKPGIAYAKAGVMLSA-MTDGTEQLSL 357 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FD+ RPGS+ LM VMD N KE RG L+ G+GIQQ ++MK+AMLSPRYTTR +LL Sbjct: 358 FDERPARPGSQALMKVMDRFN-KEKRGALFLLGEGIQQDFRMKQAMLSPRYTTRWDELLV 416 Query: 421 VK 422 VK Sbjct: 417 VK 418 >UniRef50_C9LED2 UmuC protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LED2_9BACT Length = 422 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 162/423 (38%), Positives = 239/423 (56%), Gaps = 3/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N+F+ S E F P L GKPV VLS+NDG ++A EAK +G+K GDP FK +D Sbjct: 1 MWALADCNSFFCSVEKAFHPGLRGKPVCVLSSNDGNIVALTPEAKKIGIKRGDPVFKVRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V FS+N +LYA MS RV + L + VE YSIDE+FC L G D+ +F Sbjct: 61 LISCHNVKLFSANMKLYAAMSRRVTNMLRKRIHHVENYSIDESFCCLDGYEQLYDMENFM 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REI V T + + VGIA +KTLAK+ + AK++ + V + E++RK ++ + Sbjct: 121 REIVENVRLWTAIPMSVGIAPSKTLAKIGSKFAKQY-KGYRSVCLIDTEEKRRKALALVD 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR KKL I T L AD ++R F + + T +EL G C+ E Sbjct: 180 LSDVWGIGRRTLKKLAYYNIHTPLAFADKSENWVRSRFTLPMIHTWKELNGVDCIDTTEV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I SRSFG +T+ ++ ++ +A+ A KLRS+ CR ++ FI T+ F + Sbjct: 240 I-AKQTICTSRSFGNMVTELEDLKASVAHFASSCANKLRSQSSLCRSVTVFIATNRFRED 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N + L T D+ +I N A L +++ G +Y+K+GV+LGD S +L Sbjct: 299 LPQYNNMLTYTLPIATADTLEITNTAIAILQELYRPGIQYKKSGVVLGDISSGKAISQDL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDLL 419 FD + R QLM +D +N + G+ T+ +GI +Q+W K +P Y T ++++ Sbjct: 359 FDHISNRSERHQLMHFIDNINQRYGKKTILLGIEGIGKQKWTAKCEQRTPNYLTDINEIM 418 Query: 420 RVK 422 ++ Sbjct: 419 TIR 421 >UniRef50_Q4FMY4 UmuC n=6 Tax=Bacteria RepID=Q4FMY4_PELUB Length = 426 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 174/421 (41%), Positives = 252/421 (59%), Gaps = 6/421 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N+FY SCE +F P + KPVVVLSNNDGC+IAR+ EAK LG+KMG+P+FK K++ Sbjct: 10 IALVDCNSFYVSCERLFNPKIRNKPVVVLSNNDGCIIARSNEAKFLGIKMGEPYFKAKEI 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V FSSNY LY D+S RVM TL+ +P +EIYS+DEAF DL+ + ++ D G+ Sbjct: 70 ILKNKVYVFSSNYSLYGDLSRRVMRTLKRFNPELEIYSVDEAFLDLSNYPDD-EVEDVGK 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 EIR+ +LQ T + +GIA+TKTL+K+ANH AKK Q GV +L +E L+ + + Sbjct: 129 EIRSIILQWTGIPTSIGIAKTKTLSKIANHIAKKKQ---SGVTNLIGIENIDPLLEKIDI 185 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +DVWG+G++++K GI L + +I+K NV+ RT ELRG PC+ LE Sbjct: 186 NDVWGVGKQMTKFYHQNGIYNAKQLKNMSNTWIKKSSNVLSSRTALELRGIPCIPLETKT 245 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++ + SRSFG R+ + + +A+ SY A+EK+RSE + I+ ++TSPF Sbjct: 246 SKRKSCVVSRSFGTRVEKFQELEEAVASYCLNASEKIRSESLIAKSITVSVRTSPFQNRG 305 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 YY N+ ++ T +S +I+ A +L+ I+ G+RYQKAG+ L S + NLF Sbjct: 306 VYYSNAKTIDFPIATNNSIEIVKTALIALNEIFINGYRYQKAGITLTGLVSSSGS-KNLF 364 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 + LM +D+ N K GR TL A G+ ++W M+R S T L + Sbjct: 365 S-TEKDEKIKGLMRSIDSTNYKYGRSTLSLASAGVNKKWNMRRDHSSKIDTANFHSLPII 423 Query: 422 K 422 K Sbjct: 424 K 424 >UniRef50_B9Z6P1 DNA-directed DNA polymerase n=2 Tax=Proteobacteria RepID=B9Z6P1_9NEIS Length = 435 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 178/423 (42%), Positives = 248/423 (58%), Gaps = 7/423 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FA D N FYA+CE VF P L G+PVVVLSNNDGCV++R+AEAK LGV MG P+F K Sbjct: 16 FAQVDCNNFYAACERVFNPALAGRPVVVLSNNDGCVVSRSAEAKRLGVPMGAPYFTLKGQ 75 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R GV FSSNY LY D+SNR M L + E+YSIDE F DL+G + R Sbjct: 76 LERQGVAVFSSNYALYGDLSNRAMRLLAGYARAQEVYSIDECFLDLSG---EAEPLRLAR 132 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL--MSAL 179 +R +LQ L VG+ +KTLAKLANH AK+ + GV+DL +L+ L + + Sbjct: 133 RLRDALLQGLGLPACVGLGPSKTLAKLANHLAKQ-EAALEGVLDLGSLDATALLQRLEPV 191 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V++VWGIGRR+ ++L GI + LA+T+ ++++ F +V R ELRG CL LE Sbjct: 192 AVEEVWGIGRRLGERLRLAGIGSARQLAETERDWLQRRFGLVTARIADELRGVSCLALES 251 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ ++ +RSFG ++T +++A +A+R AE+LR + F+ I+ S Sbjct: 252 LLEPRRSVMSTRSFGRKVTALAELQEAAAMHASRVAERLRRQGSLAHFLRVGIR-SGVPG 310 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 S +V LL P+ DSR + AA +++ +WQ G RY KAGVM + G Q + Sbjct: 311 WGRGGDASETVALLPPSNDSRVLARAAQQAVARLWQRGVRYHKAGVMAFELVDAGQVQAD 370 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LF + S +LM MD +N + GRGT+ +G +Q W+MK+ LSP YTTR D+ Sbjct: 371 LFAGDPLDAKSARLMQAMDAINQRMGRGTVRLLAEGTKQPWRMKQDHLSPCYTTRWDDIP 430 Query: 420 RVK 422 VK Sbjct: 431 VVK 433 >UniRef50_A9W7Y3 DNA-directed DNA polymerase n=10 Tax=Rhizobiales RepID=A9W7Y3_METEP Length = 478 Score = 400 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 186/425 (43%), Positives = 235/425 (55%), Gaps = 10/425 (2%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N+FY SCE VF L PV+VLSNNDGC IAR EAKALG+KMGDP+FK + L Sbjct: 54 ALIDGNSFYCSCERVFDAKLARVPVIVLSNNDGCAIARTPEAKALGIKMGDPYFKIRGLC 113 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 GV FSSNY LY DMS R+ + + +P VEIYSIDE+F DLT RD R+ Sbjct: 114 EHQGVRVFSSNYTLYGDMSARINAIYRDATPDVEIYSIDESFLDLTAFVR-RDRVALARD 172 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IRATV T + VGI TKTLAKLANH AK + GV DL+ + L V Sbjct: 173 IRATVRAWTGIPTCVGIGPTKTLAKLANHIAK-TVPELDGVCDLTEPAAYEHWLCRLHVG 231 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 ++WG+GR KL+AMGI TV DL D D R +RK VV ER + ELRG CL L+ Sbjct: 232 ELWGVGRASLPKLEAMGIDTVADLRDIDPRPVRKALTVVGERMIHELRGVSCLGLDLVPA 291 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 ++ +RSF R+T+ + QA+ ++A R EKLR E I+ F TS EP Sbjct: 292 RRKGCAVTRSFSGRVTERAELEQAVAAHAIRLGEKLRREGLGTDHITVFYHTSEHDRGEP 351 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ----AGHRYQKAGVMLGDFFSQGVAQL 358 S V L T D+ +I AA + W+ RY KAGV+ D +Q Sbjct: 352 MRSVSTVVTLPEATNDTLALIPAALHGMARTWREQGNPPWRYSKAGVVTVDLVPLAASQR 411 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ---WQMKRAMLSPRYTTRS 415 L R +++LM +D NA+ GRG++ A G+ QQ W K M +PRYTTR+ Sbjct: 412 ALIG-RLDRERADRLMGALDACNARFGRGSVVPARAGLAQQRRTWTTKFEMRTPRYTTRA 470 Query: 416 SDLLR 420 +L Sbjct: 471 DELPV 475 >UniRef50_A5GPY7 Bacterial UmuC protein homolog (SOS-regulated protein) n=14 Tax=Cyanobacteria RepID=A5GPY7_SYNR3 Length = 426 Score = 400 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 176/421 (41%), Positives = 253/421 (60%), Gaps = 6/421 (1%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FYASCE +F P L G+PVVVLSNNDGC++AR+ EA+ LG+ MG P+F+ D Sbjct: 6 ALIDCNNFYASCEQLFDPALQGRPVVVLSNNDGCIVARSREARQLGIAMGTPYFQVADRL 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R VV SSNY LY DMS RVM+ L++ P +E+YSIDEAF L + +L+ + E Sbjct: 66 RDQQVVVRSSNYALYGDMSQRVMALLKQRVPELEVYSIDEAFARLPALP-AHELSSWAAE 124 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +R V Q+ L + +G+A +K LAKLAN AK+ +T GV +L + ++ + V+ Sbjct: 125 LRVLVRQQLGLPIALGMAPSKVLAKLANRLAKRDPART-GVCNLLLEPQLPDRLAEVAVE 183 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 D+WG+GRR+++ G+ T LDLA D IR+ + VV R +ELRG CL LE Sbjct: 184 DLWGVGRRLARWCRLRGLATALDLAQADSALIRQGWGVVGLRLQQELRGISCLALESEPA 243 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 KQE SRSFG + D S+R+A+ ++ R AEKLR + Q ++ F++TSPFA Sbjct: 244 AKQETCVSRSFGTAVLDRLSLREAVAAHVVRGAEKLRRQGQRASRLTVFVRTSPFAAG-- 301 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 +Y NS SV L T D+ ++ A +D +++ G+ +QKAGV+LG Q Q +L Sbjct: 302 FYANSISVSLPLATADTAVLLQRALPLVDQLFRHGYAFQKAGVLLGQLQPQEHLQHHLLV 361 Query: 363 DNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 +P+ +L+ +D LN + G GT+ +A G++ W M+R LS +TT +DL Sbjct: 362 PCSPQQLRRRSRLLQAVDGLNQRFGTGTVQWAAVGVEPDWCMRRQHLSAHFTTSKADLPM 421 Query: 421 V 421 V Sbjct: 422 V 422 >UniRef50_A5Y0S5 UmuC-like protein n=9 Tax=Proteobacteria RepID=A5Y0S5_ACIBA Length = 425 Score = 400 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 186/425 (43%), Positives = 246/425 (57%), Gaps = 10/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE VF+P L GKPV++LSNNDGC +AR+ EAKALG+KMG P FK ++L Sbjct: 5 IALIDGNNFYVSCERVFQPHLLGKPVIILSNNDGCAVARSEEAKALGIKMGAPLFKIREL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + GV SSNY LY DMS RV+ + + SP EIYSIDE F DL+G + + Sbjct: 65 VKEHGVKVLSSNYTLYGDMSRRVVDAVSQFSPHYEIYSIDENFVDLSGFGDRYEA--IAV 122 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++RATV Q T + VGIA+TKTLAKLAN AAKK GGV D + + +PV Sbjct: 123 DMRATVRQVTGIPNCVGIAETKTLAKLANFAAKKNPI-FGGVCDFTQPAVLAWCLDRIPV 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIGR+ KL + GI T L D R+ VVLERTV EL+G CL++E+ A Sbjct: 182 AEVWGIGRQTQIKLASQGIATAAQLRDMPRTLARQLGTVVLERTVAELQGIRCLEIEDIA 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 P ++ + +RS G + D ++ QA+ ++A+RAAEKLR I+ F T+ F+ N Sbjct: 242 PQRKGMAVTRSAGAPMRDLEAVMQALTAHASRAAEKLRLHGLVAGQITAFFHTNSFSKNA 301 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA-----GHRYQKAGVMLGDFFSQGVA 356 + S +VKL T ++ D++ A R A W G+ Y KAGVML D A Sbjct: 302 AQHSVSRTVKLKPMTNNTFDLVQAVNRCARAGWHPKAHEHGYSYTKAGVMLDDLLKAEDA 361 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSS 416 LFD P +LM MD +N + G+ + QG Q + + K M SPR+TTR S Sbjct: 362 PKMLFDIVQP--RDARLMEAMDAINDRYGKRKVVIGAQGFQNKHEAKADMRSPRFTTRLS 419 Query: 417 DLLRV 421 DL + Sbjct: 420 DLPVI 424 >UniRef50_Q0ACU7 DNA-directed DNA polymerase n=3 Tax=Nitrosomonas eutropha C91 RepID=Q0ACU7_NITEC Length = 431 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 180/429 (41%), Positives = 258/429 (60%), Gaps = 14/429 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF+P L KP++VLSNNDGC IAR+ +AKALGVKMG PWF+ K Sbjct: 3 LFALIDGNNFYCSCERVFQPQLQNKPLIVLSNNDGCAIARSEQAKALGVKMGHPWFQVKH 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + G++ S+N+ LY DMSNR+MS EL EIYSIDE F L G+ D+T Sbjct: 63 LEKSAGLISLSANFALYGDMSNRMMSLASELGDSQEIYSIDECFLGLQGIP---DVTQRA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG-------GVVDLSNLERQR 173 ++ RA +LQ + +GI +KTLAKLANH AK +R+ G V +L L ++ Sbjct: 120 KDTRAKILQWIGIPTCIGIGASKTLAKLANHIAKDAERKPGSYPPRLAQVCNLVELTERQ 179 Query: 174 K--LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + L + ++WGIGRRI ++L GIKTV D + D +RK F+V LERT REL G Sbjct: 180 RMYLFGITDIGEIWGIGRRIGQQLKDAGIKTVKDFVELDPGTVRKRFSVTLERTWRELHG 239 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + C+ LEE K+EI +R+FG+ + D S+ +A+ + +RAAEKLR + + I F Sbjct: 240 QSCIDLEEIPAPKKEIAYTRTFGQPVRDLVSLTEAVTEFTSRAAEKLRRQQSFASAILVF 299 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I TS P Y S +V L+ P D+ +++AA R L I++ G+ + KAGV+L D Sbjct: 300 IHTSKHRAG-PQYARSITVPLVRPASDTNSLLSAAIRGLRTIYKPGYDFIKAGVILMDLS 358 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPR 410 + V Q+ L ++ ++QLM +D +N++ GRGT+ + G ++ W M + +P Sbjct: 359 TTTVQQIELDFGSSMSNKADQLMQAIDQINSQFGRGTIIYGSTGTGKKTWSMSQQRKTPS 418 Query: 411 YTTRSSDLL 419 YT + D+ Sbjct: 419 YTAKIRDIP 427 >UniRef50_Q3AKE9 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q3AKE9_SYNSC Length = 424 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 175/422 (41%), Positives = 237/422 (56%), Gaps = 6/422 (1%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FYASCE P L G+PVVVLSNNDGC++AR+AEA+ALG++MG P+FK + Sbjct: 6 ALIDGNNFYASCEQSLDPALIGQPVVVLSNNDGCIVARSAEARALGIRMGTPYFKARREL 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R VV SSNY LYADMS R+MS LE +E+YSIDEAF + RN DL + R+ Sbjct: 66 ERHNVVVRSSNYALYADMSQRMMSLLEAHCEELEVYSIDEAFGRIRRPRN-GDLQGWARQ 124 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +RA Q L + +G+ +K AKLAN AK+ G+ DL + + + + ++ Sbjct: 125 LRARARQNLGLPIAIGLGASKAQAKLANRLAKQ-APDHAGMFDLGQCDNPDRWLETIAIE 183 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 DVWGIGR+++ GI L D +R VV R RELRG CL LE Sbjct: 184 DVWGIGRQLAHWCRLRGISNARHLRDMPSGELRAKCGVVGLRLQRELRGHACLPLELAPA 243 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 KQE SRSF IT + QAI +Y RAAEKLR + Q ++ + +TSPFA Sbjct: 244 PKQETCVSRSFSRPITSQEELHQAIATYVVRAAEKLRKQRQRAAALTIYTRTSPFAPG-- 301 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 +Y +AS +L P+ D+ ++ AA + I++ + KAGV+ S + Q +L Sbjct: 302 FYSQAASTQLDLPSNDTAVLLQAARPLVARIFRPHRQLAKAGVLTQHLQSHNILQTHLMV 361 Query: 363 DNAPRPGSEQ--LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 + ++ LM +D +N + GRGTL +AG G+Q W M+R LS TTR DL Sbjct: 362 PMSEEQQQKRECLMQTIDRINRRYGRGTLQWAGCGLQPSWLMRREQLSRAATTRLQDLPV 421 Query: 421 VK 422 VK Sbjct: 422 VK 423 >UniRef50_D1R5W7 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W7_9CHLA Length = 421 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 165/422 (39%), Positives = 242/422 (57%), Gaps = 7/422 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D N FY SCE + P L KPV+VLS NDGCVI+R+ EAK LG+KMG+P+FK K+ Sbjct: 4 FVLADCNNFYVSCERMLHPKLEEKPVIVLSQNDGCVISRSQEAKQLGIKMGEPFFKVKEY 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R V+ +SSNY+LY D+S RVM++L + +P ++IYSIDEAF + ++ Sbjct: 64 CERAKVIVYSSNYQLYGDISERVMNSLSQFAPEMQIYSIDEAFLKFPITLSDEEMFAECM 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ + + + + +GIA TKTLAK+AN AK Q + GV L+ + ++ P+ Sbjct: 124 RIKKLIKKWVGIPISIGIAPTKTLAKVANSLAK--QNRDLGVFSLNEPLSREAILKEYPI 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +DVWGIGRR+SK+L +GI TV D F+RK VV ER + EL+G L LEE + Sbjct: 182 EDVWGIGRRLSKRLKGIGILTVWDFIQLTPYFVRKTMGVVGERMLLELQGISALDLEESS 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN- 300 P KQ I SRSFG ++TD + +A+ ++ ++A KLR + QY + +++ F+ + Sbjct: 242 P-KQSITFSRSFGRKVTDISELGEALATFVSKACVKLRKQKQYAAALLVYLQF--FSQDG 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E GN +PT D+ ++I A + L ++ +Y+K GV+L D S +L Sbjct: 299 ESLQGNHMIYSFPSPTDDTIEMIAATKQCLTKLYIDKKKYKKCGVILLDLKSAEQFMPDL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F P +Q+M MD LN + + T++ G GI Q W+ + SP TT L Sbjct: 359 F-QKGPDIKRQQVMRAMDKLNTRLKKRTVFLGGTGIHQDWKSRSDQRSPYNTTSWDHLPI 417 Query: 421 VK 422 VK Sbjct: 418 VK 419 >UniRef50_D0Z2K2 Error-prone repair protein UmuC n=5 Tax=Photobacterium RepID=D0Z2K2_LISDA Length = 430 Score = 393 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 167/425 (39%), Positives = 240/425 (56%), Gaps = 6/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D FY SCE +F P L GKP+VVLSNNDGC +A + +AKALG+ G PWFK + Sbjct: 8 VWALVDAKNFYCSCEQLFDPSLVGKPLVVLSNNDGCCVAISQQAKALGIVRGVPWFKIQR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV SSNY LYADMS R + L SP VE YSIDEAF L G +L D+G Sbjct: 68 EAIQQGVQVRSSNYTLYADMSRRFIEELSRFSPHVEQYSIDEAFIRLDGF-QLNELADYG 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIR T+L+ L V VGI T TLAKL NHAAK +++Q GV+ + R++ L+ P Sbjct: 127 REIRTTILKNIGLPVRVGIGATPTLAKLGNHAAKVYEKQVRGVIQIDTEHRRQWLLERTP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + D+WGIG + + +L GI+ LA D IR+ +NV L RTV EL+ C+ + Sbjct: 187 IQDIWGIGAKTATRLRTAGIQNGWQLAQQDSIDIRRLWNVTLARTVLELQQISCISPGDV 246 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +++I+ SR+FG+ I + A+ + RA EKLR + + F++T+ + Sbjct: 247 EEKRKQILSSRTFGQGINQLDELNAALAFHCQRAGEKLRKQQSQTGVVGVFLRTNKHK-S 305 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGVAQL 358 P + SA + L++ TQD+ I+ A L+ I++ G+ Y K GV+L QL Sbjct: 306 LPQHHRSAVMPLISATQDTYRILEVAQALLNEIYRGGYEYYKVGVILEQLTDVTDDAIQL 365 Query: 359 NLFDDNAPRP-GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 ++FD +A +LM V D +NA+ + + A W M++A S R+TTR + Sbjct: 366 DMFDSSALYESKRRELMAVADRVNARY-KNGIKPASIISSTNWHMRQAHRSNRWTTRLDE 424 Query: 418 LLRVK 422 L + Sbjct: 425 LPIAR 429 >UniRef50_B2FJL0 Putative UV protection and mutation protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FJL0_STRMK Length = 429 Score = 393 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 178/429 (41%), Positives = 240/429 (55%), Gaps = 18/429 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY S E F P L G+PV V S+ DGCVIAR+A +K LGV MG P + Sbjct: 11 IALQDGNNFYCSVEASFDPRLRGRPVCVASSGDGCVIARDALSKKLGVPMGAPIHQIPPN 70 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R + S+N+ LY D+S R+ S L +L P +E YSIDE F DL G+ + +D Sbjct: 71 VR-WQITFRSANFALYGDISTRIASILRDLFPAIEQYSIDENFIDLAGIPS-KDHERLAA 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E RA +L+ T + VGI TKTLAKL+N AK GVV + + PV Sbjct: 129 EARARILKWTGIPSCVGIGPTKTLAKLSNKRAK---STVEGVVTTMPDDPA---LLTYPV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D WG+GR+++ +L A GI T DLA D+ +R + VV+ RT REL+G C LEE Sbjct: 183 EDDWGVGRKLTARLGADGILTAGDLAAADVDTLRSRYGVVMARTQRELQGISCADLEEHE 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++EI+ SR+FG+ IT + QAI ++A RA EKLRS + FI+T+PF N Sbjct: 243 AQRKEIMVSRTFGKDITSQTELMQAIATFAQRACEKLRSRQLQAAGVWVFIQTNPFKQNL 302 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y S S +LL P+ D+R+I+ A A+++ G+ Y+KAGV L D V Q +LF Sbjct: 303 PQYNPSKSFRLLMPSADTREILMVAQGLAKAMFRPGYGYKKAGVSLLDLIHMDVQQGDLF 362 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--------QQQWQMKRAMLSPRYTT 413 S+ +M VMD N K GRG++ FA + W +KR MLSP YTT Sbjct: 363 AGIDQ--RSKAIMEVMDRTNQKFGRGSMGFAFTAWRPSGKTLEKPAWSVKRDMLSPAYTT 420 Query: 414 RSSDLLRVK 422 L+RV+ Sbjct: 421 DWKQLIRVR 429 >UniRef50_UPI0000E87FBE DNA repair protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FBE Length = 419 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 165/423 (39%), Positives = 237/423 (56%), Gaps = 8/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL DVN FY SCE +F P L KPVVVLSNNDGC+I+R+ EAK LG+KMG+P FK Sbjct: 1 MIALVDVNNFYVSCERLFNPYLINKPVVVLSNNDGCIISRSQEAKNLGIKMGEPLFKASA 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R+ V SSNY LYAD+S RVMS L + + EIYSIDE F D+ G N +D Sbjct: 61 IIRQHQVQVLSSNYPLYADISARVMSLLSDFTSTQEIYSIDECFLDMEGHENLQD---IA 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSA 178 R+I+ + + + V VGI TK LAKLAN AKK Q Q GV +SN +M Sbjct: 118 RKIKRLLWRYLRMPVCVGIGPTKVLAKLANRCAKK-QDQQSGVFIISNASASELNNMMDD 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L VD +WG+G+ ++ KL I ++LDL ++ ++RK F + +ER + EL G CL ++ Sbjct: 177 LSVDQIWGVGKALAVKLQKKSIYSILDLKQSNPTWVRKFFGINMERIIYELNGVSCLLID 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 K+ I CSRSFGE + DY + +A+ +++ RAA K RS++ ++ F+ T+PF Sbjct: 237 NQYVAKKGIRCSRSFGENVNDYIRLAEAVTTFSGRAALKARSQNTGTNAVTVFLSTNPFN 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 +Y ++ ++ L T + I+ AA L I++ Y K GV+L Sbjct: 297 KEHRHYQDAITMPLEQLTNQTNLIVKAALSGLRKIYKQKVTYSKCGVILNSLEELDKLSY 356 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 L L ++D +N K + +L+ A Q + W M+++ S Y+T S+L Sbjct: 357 PLISPI--HNRQANLTKIIDEINNKFDKNSLHIAFQPLYPSWDMRQSYRSQSYSTSWSEL 414 Query: 419 LRV 421 L V Sbjct: 415 LLV 417 >UniRef50_Q30X29 DNA-directed DNA polymerase n=8 Tax=Proteobacteria RepID=Q30X29_DESDG Length = 492 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 182/441 (41%), Positives = 247/441 (56%), Gaps = 20/441 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N+FY SCE VFRPDL +PVVVLSNNDGC+IAR+AEAKALG+ MG PWFK + Sbjct: 53 LYALVDCNSFYVSCERVFRPDLVRRPVVVLSNNDGCIIARSAEAKALGIPMGAPWFKVRR 112 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDLTD 118 GV FSSNY LY DMS+RVM LE P V +YSIDEAF L + Sbjct: 113 HAESAGVTVFSSNYALYGDMSSRVMRVLERFCPDVHVYSIDEAFMRLDSLIMPPGMSPER 172 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK----------KWQRQTGGVVD--- 165 + +R V +RT + V VG+ TKTLAKLAN +K + GV + Sbjct: 173 YAACLRREVYRRTGIPVSVGLGCTKTLAKLANRLSKQQNAGARAMVPAAFRYAGVFNFGA 232 Query: 166 LSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERT 225 +++ + L+ L V DVWG+G R + +L GI+T L D +R++ +V T Sbjct: 233 VTDPDVMDALLETLDVTDVWGVGARHAGRLRTWGIRTARALRDAPDDRVRRYMSVTGLHT 292 Query: 226 VRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYC 285 V ELRG CL L++ P+++ ++ SRSFG +T M +A+ +Y RAAEKLR E Sbjct: 293 VLELRGISCLPLDDAPPSRRSVVSSRSFGTLVTHKEHMLEAVTAYMTRAAEKLRREQLEA 352 Query: 286 RFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGV 345 + I T + P Y +SA V+L PT + +I A L++IW+ G+RYQKAGV Sbjct: 353 HCVGVMISTPRH-GDGPRYADSAQVQLAVPTSHTPQLIVRARALLESIWRDGYRYQKAGV 411 Query: 346 MLGDFFSQGVAQLNLFDDNAPR----PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 ML S Q+++ +LM D +NA+ GRGTL +A G+ + W Sbjct: 412 MLSGLESAVSRQVSMLPALQGTGRGLERGRRLMAAADAVNARFGRGTLEYAAAGLGRPWS 471 Query: 402 MKRAMLSPRYTTRSSDLLRVK 422 MK+ LSPRYT+ L V+ Sbjct: 472 MKQEHLSPRYTSDWKKLPLVR 492 >UniRef50_D0RPK3 Protein UmuC n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPK3_9RICK Length = 433 Score = 390 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 168/420 (40%), Positives = 249/420 (59%), Gaps = 3/420 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N+FY SCE +F P + PVVVLSNNDGCVI+R+ EAK +G+KMG+P+FK K L Sbjct: 14 IALVDCNSFYVSCERLFNPRINNLPVVVLSNNDGCVISRSVEAKKIGIKMGEPYFKVKHL 73 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V FSSNY LY D+S RVM L++ P +EIYSIDEAF DL+ + DL +F Sbjct: 74 IKSHKVQVFSSNYALYGDISRRVMHVLKKFCPTIEIYSIDEAFLDLS-LIKDEDLENFIS 132 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+R +L+ T + V +G+A+TKTL+K+ANH AKK ++ L++ + L+ P+ Sbjct: 133 ELRFIILKWTGIPVSIGVAKTKTLSKVANHIAKK-EKIGIKSFILNDEKEIDDLLKNFPI 191 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D+WG+GR+ISK + IK+ DL D R+I+K+ NV+ +TV ELRG C+ E + Sbjct: 192 EDIWGVGRKISKLYKSNNIKSAYDLKDASNRWIKKNTNVLGLKTVMELRGINCIGFESNS 251 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++ SRSFG+++ DY ++++++ ++ AAEK+R + Q + + FI+ SPF +E Sbjct: 252 NPRKNCCVSRSFGKKVLDYDTLKESVVAHCLNAAEKIRVDRQVVKSVIVFIRNSPFDKSE 311 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 ++ S V L P+ DS + +SL I+ G RYQKAGV+ +G LF Sbjct: 312 KFFSRSKKVDLPIPSDDSILLTKICIQSLKEIFLKGPRYQKAGVIFSGLSRKGKYDEGLF 371 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 + S+ LM +D N K GR + A G W+M+R S T+ L + Sbjct: 372 S-YEKKEKSQSLMKAIDKTNFKFGRNMITVADTGFCNNWRMRRGHSSKIDTSSYDFLPTI 430 >UniRef50_A5FU54 UMUC domain protein DNA-repair protein n=2 Tax=Acetobacteraceae RepID=A5FU54_ACICJ Length = 418 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 190/419 (45%), Positives = 236/419 (56%), Gaps = 8/419 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D N+FY S E F P+L +P+VVLSNNDGC IAR EAKALG+KMG+PW + Sbjct: 4 FGLIDGNSFYCSAEQAFAPELRSRPLVVLSNNDGCAIARTPEAKALGIKMGEPWHLFRKR 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 V SSNY LY DMS RV L E P+VE YSIDE F DL G+ DL F R Sbjct: 64 PESRAVEWRSSNYALYGDMSRRVYDVLTERVPQVEPYSIDEMFLDLDGIP---DLDRFCR 120 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++R V Q + VGI TKT+AKLAN AKK + GGV DL + E + + LP+ Sbjct: 121 DLRRDVRQIAKIPTCVGIGPTKTIAKLANKIAKK-ETALGGVCDLRDPELRARHYERLPI 179 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIG ++ KL A GI T+ D D R +R V R ELRG CL L A Sbjct: 180 AEVWGIGGQVGAKLAAAGITTIADFVRADPRAVRDMLTVTGARVQTELRGASCLPLSLMA 239 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 PT++ I SRSFG I +R+AIC++AARAAEKLR+E I+ F T+P + Sbjct: 240 PTRKGIAVSRSFGHMIDRPAELREAICTFAARAAEKLRAEGLEAGQITVFTHTNPHNGD- 298 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P+Y K + PT D+ +I A R L A+W G+RY KAGVML D Q LF Sbjct: 299 PWYSAQRQGK-IEPTADTGLLIGEAIRLLRAVWHPGYRYFKAGVMLQDLAPA-RRQAVLF 356 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 R S M MD +NA+ GRGTL A W +R LSPRYTT++ ++L Sbjct: 357 ASF-DRDQSAAAMKAMDAINARFGRGTLRIASTATSPSWGARRQNLSPRYTTQAGEMLV 414 >UniRef50_A6WU94 DNA-directed DNA polymerase n=28 Tax=Gammaproteobacteria RepID=A6WU94_SHEB8 Length = 418 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 180/423 (42%), Positives = 252/423 (59%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY S E VFRPD GKP++VLSNNDGC++A N +AK GV P+F+ KD Sbjct: 1 MFALVDANSFYCSAEQVFRPDWRGKPMIVLSNNDGCIVAANKQAKERGVPKFAPYFQVKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 L + GV+ SSNYELYAD+S ++M+ + +P +YSIDE+F + L Sbjct: 61 LCTKLGVIVCSSNYELYADLSAKMMNIIGRFAPEQHVYSIDESFLSFKNSYPAIKCLQAQ 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G+ IR V + T L V VGI T TLAK ANHAAKK GV + N + + ++ ++ Sbjct: 121 GQLIRKAVWKETRLPVCVGIGSTLTLAKAANHAAKKLPGYQ-GVCAIDNEQDRISILQSM 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V+DVWGIGRRISKKL+ M ++T DLA RK F++ +ERTVREL G+ C +E Sbjct: 180 SVNDVWGIGRRISKKLELMNVRTAYDLAKIPAGLARKQFSIEIERTVRELNGQACKVWDE 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K++I +RS GERIT+Y + QA+ + A AA K R + C+ + F SP+ Sbjct: 240 ARADKKQIFSTRSVGERITEYEDLLQALSKHVAIAAAKARKQGSSCKTMLLFASNSPY-- 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +E G V T S ++I T++ +++AG RY K GV L D S QL+ Sbjct: 298 DERPTGFKTLVHFACATDCSIELIQGMTQAASQLFRAGVRYYKVGVGLIDLVSTQHGQLD 357 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LF+ + +P LM +D +N + G TL+ A QGI+Q+W M+R +L+P+YTT+ L Sbjct: 358 LFNVSKAKP---ALMKTLDGINQRYGTDTLFIAAQGIEQKWAMRRDLLTPQYTTKWKCLP 414 Query: 420 RVK 422 +K Sbjct: 415 EIK 417 >UniRef50_D1PC12 UmuC protein n=2 Tax=Bacteria RepID=D1PC12_9BACT Length = 461 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 190/462 (41%), Positives = 258/462 (55%), Gaps = 43/462 (9%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D N FY SCE VFRPDL GKPVVVLSNNDGCVIAR+ EAKALG KMGDP+++ K+ Sbjct: 1 MIGLADCNNFYCSCERVFRPDLTGKPVVVLSNNDGCVIARSEEAKALGYKMGDPFYQVKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCD-------------- 106 GV FSSNY LY +SNRVMS L SPR++ YSIDE+F + Sbjct: 61 KLEAEGVAIFSSNYTLYGSLSNRVMSMLSHYSPRIDQYSIDESFFEADESMAKVFFREHA 120 Query: 107 -----LTGVRNCRDLTD--------FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAA 153 L +L++ +G +I A VL+ + + VGIA+TKTLAK+ + A Sbjct: 121 EDHPTLFNKMTIDELSEKPDSLLHRYGSKISADVLRAVGIPISVGIAETKTLAKIGSKFA 180 Query: 154 KKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRF 213 KK+ + G + ER+ K +S PV+DVWGIGR+I++KLD MGI+T AD + Sbjct: 181 KKY-KGFQGCCLIDTDERRHKALSLFPVEDVWGIGRQIARKLDYMGIRTAAQFADKKESW 239 Query: 214 IRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFG-ERITDYPSMRQAICSYAA 272 +R HFN+ RT +EL GE C+ +EE P K+ I SRSF E ITD + +A+ ++A Sbjct: 240 VRSHFNITTLRTWKELNGESCISIEEL-PQKKSICTSRSFANEGITDKNVIEEAVANFAV 298 Query: 273 RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA 332 R EKLR + C+ I+ F TS F + P Y S+ L T +I+ AA L A Sbjct: 299 RCTEKLRRQGSVCQGITVFAWTSRFNEHVPEYTIHDSLTLPIATNAQEEIVGAALSILRA 358 Query: 333 IWQA------------GHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTL 380 + ++KAGV+L Q +LFD R ++LM +D + Sbjct: 359 KYPKPMADSRPDRSDMSFHFKKAGVILWQISPDHPRQQDLFDPI-DRSKQKKLMEAIDAI 417 Query: 381 NAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRVK 422 N K G GT+ A QG ++ +KR +S ++TT D+L+VK Sbjct: 418 NRKNGYGTIRQAIQGTDCRFDLKREYMSKQFTTNIHDILKVK 459 >UniRef50_C6NU08 Error-prone repair protein UmuC n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU08_9GAMM Length = 424 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 163/423 (38%), Positives = 246/423 (58%), Gaps = 11/423 (2%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FY SCE +F+P L GKPVVVLSNNDGC +AR+ EAKALGV MG P+F+ + L Sbjct: 4 ALVDANNFYVSCERLFQPRLEGKPVVVLSNNDGCAVARSNEAKALGVTMGAPYFQWEKLA 63 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 ++ G+V SSNY LY ++S R+M L + EIYSIDE+F ++ + + + Sbjct: 64 KQHGIVVLSSNYALYGELSARLMRLLGNQAVGQEIYSIDESFLEVPVADA--EADSWAQH 121 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ--RKLMSALP 180 +R + ++ L V VG+A TKTLAK+ NH AKK +R GV +L+ Q R+ P Sbjct: 122 LRQQIRRQLGLPVCVGVAPTKTLAKVCNHWAKK-ERTAEGVCIWGDLDPQQRRQWFHETP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V D+WG+GRR++ +L+A G+++ DLA TD R++R+H+ V L R +ELRG PCL LEE Sbjct: 181 VGDLWGVGRRLAARLEAQGVQSAGDLARTDSRWLRQHYGVALARMQQELRGVPCLSLEEV 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +P +Q+I CSRSFG +T++ + +++ + R EKL + + + +++SPF Sbjct: 241 SPPRQQIQCSRSFGRAVTEFSDVLESLSLHTQRGIEKLHEQALWAGSVQVMVRSSPFR-- 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +Y +A +L P++D R + A + +Q G YQK+G++L D +Q +L Sbjct: 299 EGFYSGTAHRRLPEPSRDYRVLWEAVRSAAAEAFQPGVSYQKSGILLFDLQAQA-RTGDL 357 Query: 361 FD-DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ--QWQMKRAMLSPRYTTRSSD 417 F +E+L + + G+ TL G++Q W M+ SP Y + Sbjct: 358 FAVQEGGEERAERLQEALQRAQDRFGKHTLARGVGGLRQGRDWAMRSDRRSPSYLSDWWS 417 Query: 418 LLR 420 L Sbjct: 418 LPV 420 >UniRef50_Q2YI99 Nucleotidyltransferase/DNA polymerase n=3 Tax=Bacteroidetes RepID=Q2YI99_9BACT Length = 431 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 157/434 (36%), Positives = 239/434 (55%), Gaps = 15/434 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+ + D + Y SCE VFRPDL GKPVVVLSNNDGCV+AR+ EAK +G+K G P+F+ Sbjct: 1 MYGIIDCDNCYVSCERVFRPDLNGKPVVVLSNNDGCVVARSNEAKKMGIKAGTPYFQLAQ 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + FSSNYELY +++ RV+ + + +P+ YSIDE F + ++L G Sbjct: 61 QYPDAKIAVFSSNYELYGELTGRVVEIIRQEAPKYFRYSIDECFVYFNDFED-KNLKSGG 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + + + + V +G+A TKTLAK+A++ AKK+ + E+ K + P Sbjct: 120 ENLHKRIRKSVGMPVSIGLAPTKTLAKMASYFAKKYAGYRHC-CLIDTDEKWTKALKLFP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF-NVVLERTVRELRGEPCLQLEE 239 +++VWGIGRR + KL+A+G+ T D A ++R F N+V+ RT +EL G + EE Sbjct: 179 INEVWGIGRRYAAKLEALGVHTAYDFAQHHGDWVRATFHNIVIYRTWQELNGVDAVPNEE 238 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A K+ I SRSF +TD+ +++ + +YAAR AEKLR + ++ F+ T+ F Sbjct: 239 MA-KKKSICTSRSFNGMVTDFDTLKTHVSNYAARCAEKLRQQGTVASIVAVFLHTNLFRE 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + P Y N +L T + DI AA L +I+ G+ Y+KAGV++ QL+ Sbjct: 298 DLPQYWNFQEKRLTVGTNSTIDICKAANEVLQSIYVKGYHYKKAGVIVMGIGPNAPMQLD 357 Query: 360 LFDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQW----------QMKRAMLS 408 LFD NA + ++L V+D +N G T+ Q Q+ +K S Sbjct: 358 LFDYNAEQFQKMKRLDAVIDRINKVNGTETIVLGSQQYTQKDGKGRAEVFANAIKHDYRS 417 Query: 409 PRYTTRSSDLLRVK 422 TTR SD++ +K Sbjct: 418 KNPTTRWSDIIHLK 431 >UniRef50_B8DRU5 DNA-directed DNA polymerase n=13 Tax=Proteobacteria RepID=B8DRU5_DESVM Length = 497 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 180/434 (41%), Positives = 240/434 (55%), Gaps = 17/434 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +AL D N FYASCE +FRPDL GKP+VVLSNNDGC+I+R+ EAKALGV+MG P FK + Sbjct: 62 WALVDCNNFYASCERLFRPDLRGKPIVVLSNNDGCIISRSDEAKALGVEMGAPAFKVRRE 121 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R GV FSSNY LY D+S+RVM TL LSP V++YSIDEAF L G D GR Sbjct: 122 LARLGVHVFSSNYALYGDLSSRVMRTLGTLSPEVDVYSIDEAFLPLRGPLAA-DPVAVGR 180 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER-----QRKLM 176 +R V + T + + VGIA T+TLAK+A AK+ R GV DL+ L+ Sbjct: 181 ALRERVARWTGIPISVGIAPTRTLAKIAGRVAKRTPRC-EGVFDLARSREVLGMSVDDLL 239 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 +LPV+ VWG+GRR++ L GI T L D ++R+ +V RTV ELRG PC+ Sbjct: 240 GSLPVESVWGVGRRLAGMLRGAGIATARALRDAGDDWVRRRMSVTGLRTVLELRGLPCIG 299 Query: 237 LEEF---APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 EE + ++ SRSF RI D +R+A+ ++AA A KLR ++ ++ Sbjct: 300 AEEQGEPPSPRHTVVSSRSFAGRIADVAMLREALATHAALAGAKLRRAGLVAGGLAVHVR 359 Query: 294 TSPFALNEP-YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS 352 T+ +S ++ L PT DS I A LD +++ G+ Y KAGVML Sbjct: 360 TARHDEQAALRCDDSVALPLPVPTADSAVFIRLAHEGLDRVFRPGYPYAKAGVMLYGLER 419 Query: 353 QGVAQLNLF----DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAM 406 Q +L E+LM V D +NA+ GRG L A +G+ W M++ Sbjct: 420 ADTRQGSLLALADGTAERDAARERLMAVADRINARYGRGKLRHAAEGLDAEAPWHMRQKH 479 Query: 407 LSPRYTTRSSDLLR 420 SPR TT +L Sbjct: 480 RSPRRTTAWDELAE 493 >UniRef50_B6BWB3 DNA-directed DNA polymerase n=1 Tax=beta proteobacterium KB13 RepID=B6BWB3_9PROT Length = 414 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 165/421 (39%), Positives = 245/421 (58%), Gaps = 10/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL DVN FY SCE VF L PVVVLSNNDGC+I+R+ EAKALG+KMG P+F+ +D Sbjct: 1 MIALVDVNNFYVSCERVFNRSLEYVPVVVLSNNDGCIISRSNEAKALGIKMGMPFFQAQD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V +SSNY LYADMSNRVM L LS EIYSIDE+F + N ++ G Sbjct: 61 LIKKNNVHVYSSNYPLYADMSNRVMQLLAHLSQDQEIYSIDESFLKI----NQKNYLLHG 116 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV-DLSNLERQRKLMSAL 179 + IRAT+L+ L V VG A+TKTLAKLAN+ AKK+ G V SN + KLM + Sbjct: 117 QHIRATILKNVGLPVCVGFAKTKTLAKLANYMAKKYPMFNGVVCFSESNPKTLTKLMCEI 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++WG+G R+ K+L+ +GI TV DL + +++++ F++ +ER V EL C +E Sbjct: 177 SVGELWGVGVRLKKRLNELGILTVHDLKTANAKWMKQMFSINIERMVYELNDIQCYPIES 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +++I+CSRSFG++I Y M A+ ++ RA+ KLR + + ++ F++ +PF+ Sbjct: 237 IKPDQKQIVCSRSFGQKINRYEDMADAVATFVQRASIKLRKQQLTAKQMTLFMRNNPFS- 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++ + ++ T + ++ A L+ I+ G Y KAG++LGD N Sbjct: 296 SKHRMQHVIRLQHYDYTDSHQQLLRLAMHGLEKIYHQGIDYHKAGIILGDLRRAT----N 351 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 L D + +P L +D + K + Q +W M++ S ++TT +LL Sbjct: 352 LNQDYSAKPEGHHLSNTIDAIRDKYHANIIMSGWQSKDGKWHMRQLNKSLKFTTSWLELL 411 Query: 420 R 420 Sbjct: 412 E 412 >UniRef50_B3E0C4 Nucleotidyltransferase/DNA polymerase UmuC n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0C4_METI4 Length = 421 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 238/422 (56%), Gaps = 9/422 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D + FY SCE +F P L GKPVVVLSNNDGC+++R+ EAK LG+ MG P+F+ K+ Sbjct: 7 FCLVDCDNFYVSCERLFNPGLEGKPVVVLSNNDGCIVSRSNEAKLLGIPMGAPFFRWKEF 66 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 F++ GVV SSNY LY D+S R+M LEE +P VEIYSIDEA+ DL+ F R Sbjct: 67 FKQQGVVALSSNYALYGDISGRLMQLLEESAPCVEIYSIDEAWIDLSAHP---SPESFAR 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+R + + T + V +GIA TKTLAK+A+ AKK G+ L E + + L V Sbjct: 124 ELREKIRRWTGIPVTLGIAPTKTLAKVASKIAKKTT-ALKGMNLLFGEEEIDQALRTLEV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D++WGIG R++ KL GI +DL + D IR+ F+V+LERTV ELR C LEE Sbjct: 183 DELWGIGARLAAKLKERGISKAVDLKNADPFKIRRLFSVMLERTVWELRAISCFGLEENV 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++I+ S++FG+ + +R A + +A KLR +S F++ PF Sbjct: 243 SPPKQILSSQTFGQTLFSLDELRAATAHFVKESARKLRQFGLAAHQLSVFLRHGPF---- 298 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y SAS + + P D ++ A L A+++ Y K+GV+L D Q Q + + Sbjct: 299 PGYIESASFRFMEPIGDVIGLLEKADSLLQALYKPQRAYTKSGVILFDLLPQSCHQASFW 358 Query: 362 DDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 + L +++ L ++G+ TL + + + W+++ +P YT+R ++ Sbjct: 359 PPEEEKERKYATLSHLLEELPKQKGKPTLRVGTELLGENWRLRFQRKTPSYTSRWEEIPA 418 Query: 421 VK 422 VK Sbjct: 419 VK 420 >UniRef50_C0YV48 Probable RumB/ImpB like DNA repair protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YV48_9FLAO Length = 423 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 146/411 (35%), Positives = 231/411 (56%), Gaps = 5/411 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N F+ SCE PDL G+PVVVLSNNDGCV++R+ EAK LG+ M P FK K+ Sbjct: 1 MYALVDCNNFFVSCERTLDPDLEGRPVVVLSNNDGCVVSRSKEAKDLGIPMAAPAFKYKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LF++ V FS+ +ELY S +V++ + E+YSIDE F DLTG + D+ ++ Sbjct: 61 LFQKHDVKSFSAKFELYNYKSQQVINIAKSYVLDHEVYSIDELFLDLTGFKYI-DIYEYC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +I+ + + + V +GIA TKTL K+AN K++ GV L E+ K + L Sbjct: 120 LKIKEEIKDKESIPVSIGIAPTKTLCKVANRIVKEFPENFNGVYILDTPEKIEKALKWLN 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR++ K++ G+ DL ++RK + R + EL+G L+L+ Sbjct: 180 IGDVWGIGRRLAAKMNDSGVYKAWDLLQKPEMWVRKIMGIHGVRMINELKGIRQLELDAP 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +P K+ I +RSF + +T+ +R+ + ++ +E+LR ++ C+ I+ F++T+ F + Sbjct: 240 SP-KKSIAVTRSFMQMLTNKEEVRERVETFGMYCSERLRKQNTCCKMITVFVQTNRFRKD 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N+ + L PT S I +AI++ G Y++AGVM+ DF + Q++L Sbjct: 299 LPEYKNAMTRILSNPTNSSILIGRVVNELFEAIYREGFHYKRAGVMVNDFVPEDQRQISL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 F+++ +M MD +N K G+ + + RA LSP Y Sbjct: 359 FEEDIQNQHL-PVMKAMDAMNRKFGKDKVRLGSMSGDNTFG--RAKLSPEY 406 >UniRef50_Q1QXW8 DNA-directed DNA polymerase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXW8_CHRSD Length = 419 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 168/423 (39%), Positives = 229/423 (54%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYA+CE +F P L G P+ VLSNNDGCVIAR+ E KAL + MG P K Sbjct: 1 MFALIDCNNFYAACERLFEPRLEGVPLGVLSNNDGCVIARSEEFKALDIPMGIPTHKIAP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR +V SSNY LY D+S RV L + P +E YSIDE F DL G+R D G Sbjct: 61 HLRR-RIVLKSSNYTLYGDLSARVQQVLAQQVPTLEPYSIDECFLDLRGMR--EDWHALG 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK-KWQRQTGGVVDLSNLERQRKLMSAL 179 + +V ++ L V +GIA T+TLAKLAN AK + R V ++ ++ L Sbjct: 118 ATLVRSVQRQVGLPVSIGIAPTRTLAKLANRQAKTQPTRPQVCVWQSADAPELAAHLARL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 +VWG+G R++ +L MGI T L +T +R+ F+VVL RT EL G+ CL + + Sbjct: 178 SPREVWGVGERLNARLAGMGIVTAAALRETPDSVLRRRFSVVLARTAAELNGQACLSMGD 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ I+CSRSFG+ + D S+ A+ + RA EKLR + I +++T+P Sbjct: 238 LETPRRSILCSRSFGQPLRDRASLAGALRHHCQRAGEKLRRDAMQASAIGVYMRTNPHHA 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + ++ L P+ D++ + AA R L +WQ YQK GVML + + +Q Sbjct: 298 DS-FHQACEWAALPFPSADTQQLNRAAQRLLARLWQPA-AYQKLGVMLTELTPRRQSQTT 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LFD P E LM DT+ A+ GR L Q WQM A S YTTR +L Sbjct: 356 LFDGAEPA-RQEALMHAWDTIRARYGRQALTLGPQPADAPWQMNSAYRSACYTTRWDELP 414 Query: 420 RVK 422 R + Sbjct: 415 RAR 417 >UniRef50_Q2P505 Polymerase V subunit n=4 Tax=Xanthomonadaceae RepID=Q2P505_XANOM Length = 428 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 180/431 (41%), Positives = 243/431 (56%), Gaps = 17/431 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASCE VF+P+L G+P+VVLSNNDGC IAR+ EAKALGV MG P K Sbjct: 1 MFALIDGNNFYASCERVFQPELRGRPLVVLSNNDGCAIARSDEAKALGVTMGQPIHKVPT 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR + S+N+ LY D+++R+ L + +PRVE+YSIDE+F DL G+R D Sbjct: 61 QIRR-RLALRSANFGLYGDIASRIGVILRQAAPRVEVYSIDESFLDLAGIR---DRRQLA 116 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG-------GVVDLS--NLER 171 ++R V Q T + +GIA TKTLAKLAN AK R+ G GV DL+ + Sbjct: 117 VDLRERVYQWTGIPNCIGIAPTKTLAKLANRVAKDAARKPGSYPADLAGVCDLAALSASE 176 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 ++ A V D+WG+GRR S +L A G+ T DL D + F VV+ R REL+G Sbjct: 177 LDAVLRATSVGDLWGVGRRWSARLQARGVYTAADLRDAAADDLLAEFGVVMARAQRELQG 236 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 CL+LEE P +Q+I+ SRSFG +++ M +A+ ++A RA EKLR+ I F Sbjct: 237 HACLELEEVEPDRQQIMVSRSFGTWVSNPQDMSEALATFAMRATEKLRARGLTSSAIGIF 296 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 T F P + S + L + T DSR ++ R + G Y+KAGV L D Sbjct: 297 ADTDSFKPGVPQHNPSRTAPLASATSDSRIVLTTVRRLFQGFMREGFAYKKAGVCLMDLA 356 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSP 409 Q +LF R G E+LM+ +D +N + GRGT G Q W ++ +LS Sbjct: 357 KPEDLQGDLF--TPARIGHEKLMSALDAINRRFGRGTAGLGASGWQNSPSWASRQELLSG 414 Query: 410 RYTTRSSDLLR 420 R+TT +DL R Sbjct: 415 RFTTSLADLPR 425 >UniRef50_Q31HB8 ImpB/mucB/samB family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HB8_THICR Length = 450 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 196/455 (43%), Positives = 274/455 (60%), Gaps = 40/455 (8%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI---------------------- 38 +FAL D N+FY SC+ F P L +P VVLSNNDGCV+ Sbjct: 3 VFALVDGNSFYVSCQIAFEPALKNRPAVVLSNNDGCVVAANAKAKAIDAFLRQQKTHFGP 62 Query: 39 ----ARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR 94 A E+ M P+FK K + V FSSNYELYADMS+R+ S L + + Sbjct: 63 GGYKAARPESI-----MFQPYFKVKRYLDQINAVVFSSNYELYADMSSRMHSVLSGFAVQ 117 Query: 95 VEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK 154 EIYSIDE+F DL+G+ + D T +G E++ TV+Q L V VG ++TLAKLANH AK Sbjct: 118 QEIYSIDESFLDLSGM-SLSDFTAYGEEMKRTVMQWLGLPVAVGFGSSRTLAKLANHLAK 176 Query: 155 KWQRQTGGVVDLS--NLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIR 212 K Q V+DL+ + L+ + + DVWG+G+ +S KL+ GI + DL +D++ Sbjct: 177 K-QPDHQDVLDLTVLSEASLNALLKKVAIRDVWGVGKGLSAKLEMQGILSAYDLKVSDLK 235 Query: 213 FIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAA 272 FIRK +++ LER VRELRGE CL L A + ++II SRSFG+ +T+Y M QA+ SY Sbjct: 236 FIRKRYSITLERIVRELRGESCLSLGALATSDRQIISSRSFGQPVTEYAEMEQAVASYIV 295 Query: 273 RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA 332 RAAEK+R++H+ C+F++ I+TSPF +Y NS ++ L+ P+ S +I A R+L + Sbjct: 296 RAAEKMRAQHKVCQFVTVSIRTSPFQNRSCFYQNSQTLPLIYPSDSSVLLIKLAKRALRS 355 Query: 333 IWQAGHRYQKAGVMLGDFFSQGVAQLNLF---DDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 IWQ+G+ YQKAGV+L +G Q++ F + P S++LM VMD LN G+GT+ Sbjct: 356 IWQSGYAYQKAGVILSGVTEKGAVQIDCFAPNPQYSANPKSDRLMQVMDFLNHSMGKGTV 415 Query: 390 YFAGQGI--QQQWQMKRAMLSPRYTTRSSDLLRVK 422 A +G Q WQMKR+ +S RYTTR +LL V+ Sbjct: 416 QLAAEGRKNDQAWQMKRSKMSKRYTTRWDELLTVR 450 >UniRef50_A6DHJ1 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHJ1_9BACT Length = 415 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 166/421 (39%), Positives = 230/421 (54%), Gaps = 15/421 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FYASCE F P L G+ +V+LSNNDGCVIAR+AEAKALG++MG P+F+ + L Sbjct: 10 IALADCNNFYASCERCFNPQLIGRAIVILSNNDGCVIARSAEAKALGIQMGVPFFEIRPL 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 GV+ +SSN+ LY D+S RVM L + +E YSIDEAF L + Sbjct: 70 VEMHGVLAYSSNFPLYGDLSARVMQLLHVHAQEIEFYSIDEAFFTLPTTHCPES---YCT 126 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ V Q T + + +GIA TKTLAK+A+ AKK + L +++++ + Sbjct: 127 SIKEQVQQCTGIPISIGIASTKTLAKIASKLAKKSRGTF-----LIQEANRQQVLENTLI 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D+WGIGRR+SK+L GI+T LA D +++ K F V + RT ELRG P L LE Sbjct: 182 EDIWGIGRRLSKRLQNCGIRTAWQLAMADEQYLLKRFGVCMLRTSHELRGIPSLALENSP 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 KQ I SR+F E + D S+ Q + +A RA +KLR E Q ++ TFI+ Sbjct: 242 EAKQSIRVSRTFPESVHDLDSLLQQLSFFADRACQKLRQEQQKALYVDTFIEG----PYP 297 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 S L +P+ + D I+A S ++ +KAGV L F S+ Q + F Sbjct: 298 TRKHRSTRFYLDSPSDYTPDFIHAVELSGQKLFHHCE-IRKAGVTLHHFSSKNAWQQDFF 356 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 LM D++N K G+G+L F G ++ + A LSPRYTT +DL V Sbjct: 357 SLPRDHQKQNTLMQQFDSINQKFGKGSLRFLSSGKRE--FSRGARLSPRYTTSWNDLALV 414 Query: 422 K 422 K Sbjct: 415 K 415 >UniRef50_Q3B3L9 DNA-directed DNA polymerase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B3L9_PELLD Length = 432 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 186/423 (43%), Positives = 249/423 (58%), Gaps = 6/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L G+PVVVLSNNDGCVIAR+ E+KALG+ MG P F+ +D Sbjct: 1 MFALADCNNFYVSCERVFNPMLCGRPVVVLSNNDGCVIARSEESKALGIAMGTPLFRCRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R GV FSSNY LY DMS+RVM+TL ++P E YSIDEAF DL+G R L + Sbjct: 61 VIGRHGVAVFSSNYPLYGDMSSRVMNTLGAMAPEQERYSIDEAFFDLSGFRRFG-LREHA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R TVL+ T + V +GIA TKTLA A K GGV+ L +R R+ +++ Sbjct: 120 ALMRRTVLKHTGIPVSIGIAHTKTLA-KLAAKAAKKDPSCGGVLMLEGADRVRRALASTH 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGR+ S KL GI+T D A +R+ V + EL+G CL LE Sbjct: 179 LEDVWGIGRQWSLKLALQGIQTAADFAGMPPALVRRLLGVTGAKVQAELQGHRCLPLELV 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P KQ I SRSFG + +++A+ S+A+RAA KLR E ++ FI TSPFA + Sbjct: 239 RPMKQTICTSRSFGRNVFSVEELQEAVASFASRAASKLRREGSTASLLTVFISTSPFAAS 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV--AQL 358 S +V L D+ ++ AA+R L+AI+Q GH Y+KAGV+LG + Sbjct: 299 ALRREASRTVSLPRAADDAMTLVTAASRVLEAIYQGGHPYRKAGVLLGAIAPKNPPGESF 358 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 LF D +E L VM+ +N + G G++ A + + W+ +SPRYTT ++ Sbjct: 359 LLFGDEGE-GRAEALQQVMEQVNLRYGNGSIRLAAED-SRAWEPLCRHISPRYTTSWEEI 416 Query: 419 LRV 421 LRV Sbjct: 417 LRV 419 >UniRef50_Q8VMP6 RuvB protein n=4 Tax=Pseudomonas RepID=Q8VMP6_PSEPU Length = 402 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 177/398 (44%), Positives = 243/398 (61%), Gaps = 4/398 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F L DVN+FY SCE +FRP+L +PVVVLSN+DGC++AR EAKALG+KMGDP+FK ++ Sbjct: 9 IFGLVDVNSFYCSCERIFRPELRHRPVVVLSNSDGCIVARTNEAKALGLKMGDPYFKVRN 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV FSSNY LY ++S+RV + L P E YSIDE F +L G+ + D G Sbjct: 69 FLEQNGVAVFSSNYTLYGELSHRVGVAIASLVPEWEQYSIDELFVNLDGLPEP--IIDVG 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R I+A VLQ T L VGVGI TKTLAK A HA+K W+ +TGGVVDL + L+ +P Sbjct: 127 RAIQARVLQWTALPVGVGIGHTKTLAKAAQHASKVWREKTGGVVDLRKPDAVEWLLRRMP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VD+VWGIG R+ L GI T +L+ D R + + ++VVLERT+REL+GE C+ LE+ Sbjct: 187 VDEVWGIGSRMRDNLARDGITTAWELSQADARAMGRKYSVVLERTIRELQGESCMDLEQT 246 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I S+ FG+R+ +++A+ +Y RAAEKLR + C + I+TS F + Sbjct: 247 VAPKQTICSSKMFGQRVHTLQGLQEALATYIHRAAEKLRLQRSLCGAMRIGIQTS-FHGD 305 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N+A+ PT D R + A ++ + I++ G Y KA V+L D +G +L Sbjct: 306 GPKYANAATCIPAYPTDDVRQLTKYALQAAEQIYRPGFAYSKAEVLLLDLRKRGEYTQDL 365 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 F + P S+ LM MD +N + G L A Sbjct: 366 FSPSQP-ERSDALMATMDKINRRWGHDCLRTAAGATDP 402 >UniRef50_D1VXB9 Putative DNA polymerase V subunit UmuC n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VXB9_9BACT Length = 440 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 169/432 (39%), Positives = 251/432 (58%), Gaps = 14/432 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +A+CD ++ Y SCE VFRPDL KPVVVLSNNDGCV+AR+ EAK +G+ G P+++ K+ Sbjct: 12 YAICDCDSCYVSCERVFRPDLKHKPVVVLSNNDGCVVARSKEAKRMGIPAGMPYYQLKEQ 71 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + + FSSNYELY +++ RVM + E SP+ YSIDE FC L + + DL +G Sbjct: 72 YHDNEIAVFSSNYELYGELTARVMQLIREASPQSVRYSIDECFCVLPDM-SFTDLKQWGE 130 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 + +L+ T + + +GIA TKTLAK+A+H AKK++ + E++ K + P+ Sbjct: 131 SLCHRILKYTGMPISIGIAHTKTLAKMASHYAKKYEGYQHC-CIIDTDEKRTKALQQYPI 189 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIGRR + KL++MGI++ D A D +IR F VV RT +EL GE C+ ++E Sbjct: 190 SEVWGIGRRHATKLESMGIRSAYDFAMHDKSWIRSLFTVVGMRTWQELWGEDCVPIDEMT 249 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 K+ I SRSF + +Y ++R I ++AAR A KLR + +S F+ T+ F + Sbjct: 250 H-KKSICTSRSFTGMLAEYDAVRTHIANFAARCAYKLRQQQSVASVVSVFVHTNRFREDL 308 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y NS SV+LLTP+ ++ I+ AA + L I+ +G++Y+KAGV++ S Q N Sbjct: 309 DQYWNSTSVQLLTPSNSTQVIVQAAAQGLQHIFASGYQYKKAGVVVMGLQSDAAIQTNFL 368 Query: 362 D-DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA----------MLSPR 410 D +L V+D LN G T+ Q +Q+ Q +A S Sbjct: 369 DFHATQMEKHIKLDQVVDRLNKLMGTETVKLGAQQYKQKQQNGKAIVFADAIQHVFKSKN 428 Query: 411 YTTRSSDLLRVK 422 TTR SD++ +K Sbjct: 429 PTTRWSDIMELK 440 >UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDP3_9FIRM Length = 395 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 176/397 (44%), Gaps = 22/397 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+NAF+ASC P GKP++V + G ++ + EA+ GVK ++ Sbjct: 4 IIHVDMNAFFASCHQAQNPQWQGKPLLVAGDPQKRHGIILTASYEARKFGVKTAMAVWQA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 K L + + S +++LY+ S R+M+ +E+ +P VE +SIDEA+ D+TG T+ Sbjct: 64 KKLCPQG--IYISPDHKLYSAYSKRIMAIMEDYTPLVEPFSIDEAWLDVTGSARLFGTTE 121 Query: 119 -FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 GR ++ +L T + VGI+ K LAK+A+ K G L + +++ Sbjct: 122 EIGRLLQQRILDETGIPCSVGISGNKFLAKMASERQKP-----QGFTILWPRDVP-EVLW 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV+++ G+GR+++ L MGI+T+ +LA +R + F V E G + Sbjct: 176 PLPVEEMVGVGRKMAPALHEMGIETIGELAAMPLRLLVSRFGVAGESLHHLANGRDDSPV 235 Query: 238 EEFA-PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + T + + S + I D + + + + + +LR R ++ +K Sbjct: 236 DPTVFDTVKSVGNSLTLPRDINDPEDVARVLLKLSEKVGRRLRQSGNVARTVTLTVKDQN 295 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGV 355 F + S L PT + I A ++ + + GV + + G Sbjct: 296 F------VSVTRSRTLHEPTGFTDVIYKTAVDIHQKQFEPWRKVRLLGVSVSNLLPADGG 349 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 QL+LF + E L V D + + G + A Sbjct: 350 VQLSLFGASE--ERMENLTRVTDRIRDRYGDTVIGRA 384 >UniRef50_Q31B23 DNA-directed DNA polymerase n=7 Tax=Prochlorococcus marinus RepID=Q31B23_PROM9 Length = 428 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 154/422 (36%), Positives = 233/422 (55%), Gaps = 6/422 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FYASCE P L KPVV+LSNNDGC+IAR+ EA+AL +KMG P+FK K+ Sbjct: 9 IALIDANNFYASCEQTINPHLRNKPVVILSNNDGCIIARSPEARALKIKMGTPYFKVKEK 68 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V SSNY LY DMS R+M+ L++ ++EIYSIDEAF ++ N ++L + R Sbjct: 69 LNKLDVAVLSSNYSLYGDMSRRLMNLLKKYCEQIEIYSIDEAFVSISRP-NDKNLYPWAR 127 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR+ + Q +T+ VGI + K AK+AN AK + G+ DLS + + + V Sbjct: 128 NIRSLIYQNLGITLTVGIGENKVRAKIANKLAK-NIDYSAGIFDLSRTRNENNYLKRISV 186 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D++WG+G++ S L + GIK +L D + I K +V +R EL+G CL LE+ Sbjct: 187 DNIWGVGKQTSNWLKSKGIKNARELRDMEENEIIKKLGIVGKRLQLELKGYKCLPLEKSK 246 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 +K+EI SRSFG IT + QA+ ++A +A+EK+RS++ I F +TS ++ Sbjct: 247 KSKKEIQVSRSFGTPITKLEDLTQALATHAIKASEKMRSQNLQSSDIRVFARTSKYSSQN 306 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y SA KL T D+ I+ I+ +++ KAGV++ D + Q ++ Sbjct: 307 --YQRSAHRKLTNATDDTNSILKIVVELSKEIYNPEYKFSKAGVLMQDLTNSEYLQQSVI 364 Query: 362 DDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 + + + S LM +D LN + + +A Q+ W+M + LS TT + Sbjct: 365 NYKSQKDLKKSATLMRTIDLLNKRFNNNAITWAITKTQKSWKMNKNFLSRSSTTDIEQIP 424 Query: 420 RV 421 + Sbjct: 425 TI 426 >UniRef50_A0K1P6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=A0K1P6_ARTS2 Length = 437 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 168/425 (39%), Positives = 233/425 (54%), Gaps = 11/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL DVN FYAS E F P L G+P+VVLSNNDGC + R+ EAKALG+ +G+PWFK Sbjct: 18 IALVDVNCFYASAERAFDPSLEGRPLVVLSNNDGCAVTRSPEAKALGIPVGEPWFKIAPR 77 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + G+V SSNYELY D+S RVM L S +E+YSIDEAF + G + +L G+ Sbjct: 78 AKEWGLVAKSSNYELYGDISARVMELLGRYSAWLEVYSIDEAFLGVKGTPD--ELLRLGQ 135 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSAL 179 I+ V + + V VGIA TKTLAKLAN AK GV + LM + Sbjct: 136 TIKTAVRRNVGVPVCVGIANTKTLAKLANKWAK-NNPGLNGVCHWDSMPPPAREALMGRV 194 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++WG+ R++K+L+ MGI ++LDLA D IR F+VVL RTV EL+G C+ +E Sbjct: 195 SVIELWGVAGRLTKRLNNMGIHSILDLARADPVRIRDRFSVVLMRTVLELQGTACIPMEA 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + ++I SRSF IT +RQ + Y +A+ +L + ++ F TS + Sbjct: 255 ERIGRDQLIFSRSFSTPITTAADLRQVMSVYGQQASARLAKHSLQAKVLTAFAGTSHYNP 314 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + Y S V L PT D + AA L I Q G +Y +AG+M+ D G Q + Sbjct: 315 LDTSY-PSVCVTLPMPTADPVLLTRAAHALLPRI-QEGTKYVRAGIMVTDLRPSG--QQS 370 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYTTRSSD 417 A + +++ + + GRG++ GI+ W M+R MLSPRYTT ++ Sbjct: 371 PLPVFANPHEERGIGPLLEDITRRYGRGSVGLGHAGIRGGPDWSMQRTMLSPRYTTHWNE 430 Query: 418 LLRVK 422 L VK Sbjct: 431 LPVVK 435 >UniRef50_A6EED8 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Pedobacter sp. BAL39 RepID=A6EED8_9SPHI Length = 417 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 146/422 (34%), Positives = 221/422 (52%), Gaps = 5/422 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFA D+N Y SCE +FRP+L + VVVLSNNDGCVIAR+ EAKA+G+KM D F ++ Sbjct: 1 MFAHVDINNCYVSCERLFRPELERRVVVVLSNNDGCVIARSNEAKAIGIKMADAEFIVRE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + V FSSNY LYADMS R+M+ L + + +YSIDEAF L ++ DL+ Sbjct: 61 RLKESNAVIFSSNYALYADMSARLMNNLARYTYTLMVYSIDEAFMALGNIKGI-DLSQHA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I V + T L + VG+ T LA A K ++Q + L E+ ++ P Sbjct: 120 ATISNNVFRDTGLPITVGVGPTL---SLAKLANKAAKKQGRNFMVLDTEEKINAMVQTFP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIG KL + I+T D F+RK V R +EL G PC +++ Sbjct: 177 IEDVWGIGMAYYNKLREINIQTAHDFRSLKADFVRKQMTVQGWRLHQELWGIPCNVIKDV 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A + I S+SF T + +A+ +A A KLR + ++ +++T+ + Sbjct: 237 AERSKGIESSQSFNTYQTTLEKVEEAVAMHAGTVALKLRQQKSMALNLTVYLRTNKHNVK 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y S +VK+ ++ ++L AIWQ G+ Y K GV +G Q NL Sbjct: 297 HDQYYPSLTVKIPFAANSVHELTQVCVQALRAIWQPGYNYLKTGVRATGIIPEGEVQNNL 356 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F++ E + ++D +N + GRGTL +G + W+MK+ LS +YTT ++++ Sbjct: 357 FNEYDNSRKQE-ISKLLDQINDRYGRGTLRLGVEGFDKTWKMKQDYLSRQYTTNWAEIIV 415 Query: 421 VK 422 + Sbjct: 416 TR 417 >UniRef50_C2BWE4 DNA-directed DNA polymerase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWE4_9ACTO Length = 456 Score = 365 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 164/427 (38%), Positives = 233/427 (54%), Gaps = 14/427 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FAL DV++ +ASCE +F P+L+G+PVVVLSNNDGCV+AR+ EAKALG+KMG PWF+ + Sbjct: 38 FALVDVDSCFASCERIFHPELFGRPVVVLSNNDGCVVARSREAKALGIKMGMPWFQIRAR 97 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 CGVV SSNYELY +S R+M L + S VE+YSIDEAF L G + R Sbjct: 98 AEACGVVARSSNYELYGSISARIMEILRQFSASVEVYSIDEAFLTLYG--RPTEFVGIAR 155 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSAL 179 +R+ +L + V VGIA T+TLAKLA+H AK GGV + +++ Sbjct: 156 SLRSRILHDLGVPVSVGIAPTRTLAKLASHGAK-HTPALGGVASWDAYTPAQHDRILRGT 214 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + D+WGIGRR+ +L+A+GI L L + IR+ FNV L++TV EL G PC+++ E Sbjct: 215 EIADLWGIGRRLKNRLEALGITDALQLQRANPGEIRRRFNVNLQQTVLELNGVPCIEIIE 274 Query: 240 FAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + +++ SRSF + Q + Y+ +LR + + F T+ + Sbjct: 275 RDAVRTHQVMYSRSFSTPVRGVTQAYQVLSIYSQNVTHRLRRQQMTAGALWAFASTAWY- 333 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQ 357 EP+ SA L T D ++ AA + L Y +AG+ L D Sbjct: 334 -KEPFSRISAMAPLHPRTDDPVTVLKAAAKVLLGQVDPRADYVRAGICLTDLGKPDPQEP 392 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYTTRS 415 L +F AP P S + ++D +NA G G++ G++ W MKR MLS R TT Sbjct: 393 LPIF---APDPESRRRGKIIDRVNAAVGEGSVGLGLAGLKAAPDWTMKREMLSNRGTTHW 449 Query: 416 SDLLRVK 422 S+L V+ Sbjct: 450 SELALVR 456 >UniRef50_B2I3H3 Nucleotidyltransferase/DNA polymerase n=12 Tax=Acinetobacter RepID=B2I3H3_ACIBC Length = 442 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 148/426 (34%), Positives = 228/426 (53%), Gaps = 6/426 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D+N Y SCE +F P L KPVVVLSNNDGCV++R+ EAK LG+KMG PWF+ + Sbjct: 9 VYALVDINNCYVSCERLFNPKLNDKPVVVLSNNDGCVVSRSEEAKLLGIKMGVPWFQIEK 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEEL--SPRVEIYSIDEAFCDLTGVRNCRDLTD 118 + GV +SSNY LYA+MS R + L E +E YSIDE F LT D++D Sbjct: 69 DALQAGVQVYSSNYTLYAEMSRRFFAVLGEFFSPDDLEAYSIDECFIHLTPYLQSIDISD 128 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE--RQRKLM 176 + ++R+T+L+ L +GI +KT AKLANH AKK + GV + L+ LM Sbjct: 129 YCNKVRSTLLKWLGLPCCIGIGYSKTQAKLANHYAKKI-KSFKGVCNFITLDPLIMEDLM 187 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 V +VWGIG ++ K+L + + T LDL + + K F+VV+ RT+REL+G+ C+Q Sbjct: 188 QQTSVKEVWGIGYQLVKQLQSYEVYTCLDLTFANEHHMAKAFSVVMARTIRELKGQSCIQ 247 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 L++ A + I+ SRSF + ++ ++QA+ + RA +L + Q C + + Sbjct: 248 LDDPAIPTKRILASRSFAQALSSIEIIKQALIFHLNRAHRRLMKQEQLCACVQVML-YEK 306 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 S ++ L T D + AA + +D +++ Y K GV+ ++ Sbjct: 307 TDKPPYKKATSQAIGLHYATDDLCILTKAAMQQIDVLYKENKSYIKIGVLFCALHARQQH 366 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSS 416 +L+ +QLM + T+ + G L WQMK+ S Y TR + Sbjct: 367 IDDLWQPLELIHQRQQLMETLGTVRKRFGSHYLQVGYHSRNPSWQMKQCHRSKNYLTRWN 426 Query: 417 DLLRVK 422 ++L ++ Sbjct: 427 EMLTIE 432 >UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=DPO4_DESAA Length = 396 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 168/396 (42%), Gaps = 18/396 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AFYAS E + P+L G+ V+V +N G V + + EA+ALGV+ P + Sbjct: 5 LIIHVDMDAFYASVELLDNPELRGQCVIVGGASNRGVVCSASYEARALGVRSAMPIVTAR 64 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 L R V Y ++S +V + +P VE S+DEAF D+T R + Sbjct: 65 KLCPRG--VFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFGSGEE 122 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 IR + +T GIA+ K +AK+A+ K + + ++ ++ + Sbjct: 123 IAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNG------LLVVPADQTQEFLDP 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ +WG+G KL ++G+KT+ D+ + +F E RG +E Sbjct: 177 LPISRLWGVGPASRNKLISLGVKTIRDVRKLTQEMLSANFGRNGEVIYAFARGMDDRPVE 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I +F + + + + R A ++R E R ++ +K + F Sbjct: 237 P-PGAAKSIGREITFDRNVYTLEEAYKWMLFLSERVARRMRKEEATGRTVNIKVKYADF- 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-Q 357 + SV L +PT D +I A + L + GV L + G A Q Sbjct: 295 -----IQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQLVTPGQAWQ 349 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 LFDD +L +D + + G GT+ A Sbjct: 350 PGLFDDPTASERKRKLNQALDGIWDRFGSGTVEPAA 385 >UniRef50_Q2RYM0 UmuC protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYM0_SALRD Length = 432 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 166/429 (38%), Positives = 225/429 (52%), Gaps = 13/429 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D FY SCE VF P L G+PV VLSNNDGCVIAR+ E K GV MG P FK ++ Sbjct: 4 VFALIDCENFYVSCERVFDPSLRGRPVAVLSNNDGCVIARSEEVKEAGVPMGAPLFKWRE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 SSNY LY DMS RV S +EE + +E YSIDEAF G+ +L+ Sbjct: 64 ELDEIEAEILSSNYTLYGDMSRRVHSIIEEEALALERYSIDEAFARFPGLSRD-NLSRVA 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLA--NHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +R + + + V VG+ TKTLAK+A N A+K G + ++ +L+ Sbjct: 123 DRLRRRIRRHIGIPVRVGVGPTKTLAKVADLNGKARKRAGWGQGTYVCPDEPKREELLKR 182 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 + V D+WGIG K L G+ + +IR VV RT ELRG CL LE Sbjct: 183 VSVGDIWGIGSAYEKTLQEKGVASAAGFRALPGPWIRSEMTVVGLRTAWELRGRSCLDLE 242 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 P ++ ++ SRSFGER+ ++R+A+ +A RAAEKLR E + I FI T F Sbjct: 243 LVRPDRKTMVRSRSFGERVETKANLREALAKHAQRAAEKLREEGLVAKGIKVFITTKRF- 301 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + P+Y N + L T + A+ R L+ I+++GH Y+KAGV L D Q Sbjct: 302 GDPPHYSNGVAGALPEHTARASAFAKASRRLLEPIYRSGHGYKKAGVCLYDIRPSRPHQE 361 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-------IQQQWQMKRAMLSPRY 411 +LF E LM +D +N K G+G + A G ++++W MKR SP Y Sbjct: 362 SLFGQGRK--EDEDLMEAVDQINRKHGKGAIGLAAAGLPEGKGHLEREWTMKRQRRSPLY 419 Query: 412 TTRSSDLLR 420 TTR +L Sbjct: 420 TTRWDELPV 428 >UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_CARHZ Length = 391 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 170/396 (42%), Gaps = 22/396 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AF+A+ E P+L GKPV+V G V A + EA+ GV+ ++ Sbjct: 5 VIIHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWEA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-T 117 L + N++ Y ++S ++ E +P VE S+DEA+ D+TG + Sbjct: 65 ARLCPHG--IFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFGPGA 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + G++I+ + + T LT VG+A K LAKLA+ K G ++ + ++ Sbjct: 123 EIGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKP-----DGFCEV-REDNVLDFLA 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV+ +WG+G ++ ++L+ MGIKTV D + F+RK F V+ + RG ++ Sbjct: 177 PLPVEMLWGVGEKMKERLNDMGIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRGIDFREV 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + + +D + + LR E Y IS I+ S F Sbjct: 237 IPERVP-KSLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLRREGFYAGGISVKIRLSSF 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVA 356 + + PT + A R + + GV G Sbjct: 296 ------ITYTRHSRFFEPTWMDDVLYREAKRLFLENYHGELPVRLVGVTATPLVPVGGGR 349 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q++LF + E L ++D LN K G T+ A Sbjct: 350 QISLFGE---DLRRENLYPIIDRLNHKYGNKTVTRA 382 >UniRef50_A0L3I2 DNA-directed DNA polymerase n=1 Tax=Shewanella sp. ANA-3 RepID=A0L3I2_SHESA Length = 416 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 238/421 (56%), Gaps = 10/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + ALCD N FY+SCE +F P GKP++V+SNNDG + + EA ALG+K P+F+ + Sbjct: 4 IIALCDGNKFYSSCEQIFNPQYRGKPLIVVSNNDGMTVTLSPEAAALGLKKFTPYFQVAE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 R GVV SSNY LY+++S++ M YSIDE F + ++L+ G Sbjct: 64 FCRANGVVVCSSNYALYSEISSQFMKVASRECFSYFPYSIDEIFAEFGNDDTPQNLSILG 123 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R V + L +GVG+ T TLAK ANHAAK+ + V+ N E ++ A+ Sbjct: 124 RKLRHDVWREVRLPIGVGLGDTLTLAKAANHAAKRLGYRGVCVIKAHNRE---AILGAML 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 DVWG+G+RI ++L +MGI T L LA + RK F V +ERT+ +L G ++ Sbjct: 181 TTDVWGVGKRIGQRLSSMGIHTALQLAQMKTKTARKMFGVNIERTIFKLNGTKAFNWDDM 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K++I +RS G+RIT +++A+ +A AA KLR + R + F +TS + Sbjct: 241 PVNKRQIFSTRSVGQRITTIEGLKEALSFHACEAARKLRGQKSVARCLVFFAQTSAYD-K 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 G S ++ L PT DS I T ++++ + A Y + GV L D QL++ Sbjct: 300 HGVSGFSRTIHLPAPTSDSMIISQQITSAVESFY-AAVPYYRVGVGLLDIEP--GLQLDM 356 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+DN +P LM+VMD LN + G+G ++ A GI+++WQM+RA LSP Y T +++ Sbjct: 357 FNDNLGKP---ALMSVMDRLNEQMGKGAVFVAANGIEKKWQMRRAFLSPSYLTNWNEIPT 413 Query: 421 V 421 + Sbjct: 414 I 414 >UniRef50_A3M2E2 DNA-directed DNA polymerase n=8 Tax=Acinetobacter RepID=A3M2E2_ACIBT Length = 436 Score = 360 bits (923), Expect = 9e-98, Method: Composition-based stats. Identities = 153/428 (35%), Positives = 228/428 (53%), Gaps = 12/428 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L DVN Y S ET F P L G+ V+VLS+NDG V+AR+ AK LG+KMG+P F+ DL Sbjct: 13 FFLVDVNNMYTSVETAFDPSLTGRSVIVLSSNDGNVVARSPAAKKLGIKMGEPLFQILDL 72 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELS--PRVEIYSIDEAFCDLTGVRNCRDLTDF 119 R V+ SSNY +Y +MS R L E EIYS+DEAF +LT R +L Sbjct: 73 VMRNDVIVLSSNYIIYGEMSRRFHKILAEYVSPENHEIYSVDEAFLELTSYRGIYNLNQC 132 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 ++I+ +L+ L V VGI ++KT AK+ N+ AK + G E + + Sbjct: 133 AQDIKEKLLKLLSLPVCVGIGRSKTEAKIMNYIAKTYPHLNGICNVFDLAEVKDSIFRNT 192 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +VWG+G + KKL M I TV DL I+ F+VVL+RTV EL G C+ +E Sbjct: 193 DVGEVWGVGSQQKKKLRLMNINTVYDLMTASPSHIQSVFSVVLKRTVLELNGISCIDIEH 252 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 PTK++I+ SR+FG+RITD +++A+ A + R+E I F ++PF Sbjct: 253 TPPTKKQIVSSRTFGQRITDIHDLKEAVIKRTQEAFTRARNEQVLVGCIIVFAYSNPFDK 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +P+Y S PT D R ++ ATR +D ++++G ++KAGV+L + + Sbjct: 313 TKPFYKKEQSSSFAVPTDDLRLLVQTATRLMDQVYKSGIEFKKAGVILTCLEPKHTYTYD 372 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAMLSPRYTTR---- 414 L D+ +EQLM ++ + G+ + F G + + W L+ Y TR Sbjct: 373 LLTDHQDLEKTEQLMKAIEEVQQIFGKNKIGFGGSMFKNRIW-----NLTANYQTRNYFS 427 Query: 415 SSDLLRVK 422 ++++K Sbjct: 428 FDGMIKIK 435 >UniRef50_C0LIJ7 Putative DNA polymerase V subunit UmuC n=1 Tax=Acinetobacter sp. NFM2 RepID=C0LIJ7_9GAMM Length = 429 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 148/416 (35%), Positives = 230/416 (55%), Gaps = 6/416 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F D+N+ Y S E + P L GKP VVLS+NDG +IAR+AEAK L + MG P FK +D Sbjct: 5 VFIHVDINSAYCSMEAFWNPKLKGKPCVVLSSNDGTIIARSAEAKLLKIPMGAPLFKVQD 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNCRDLTD 118 + + V SSN+ LY +MS R L IYSIDE F + T D T+ Sbjct: 65 IINKHNVHVLSSNFALYGEMSRRFHGILSGFVDPSCYSIYSIDEGFIEFTQFTKNFDATE 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE--RQRKLM 176 REIR V + LT VG+ +T T +K+AN+ AKK + G+ +L + Sbjct: 125 MAREIRHQVYKFIGLTTCVGVGRTLTESKMANNLAKK-NPELNGICNLVTMSLVDVESYY 183 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 ++PVD++WG+GR+ +KKL+ MGI +VLDLA ++ +R+ FNV ++ T+ EL G+PC + Sbjct: 184 QSMPVDEIWGVGRKYAKKLNDMGILSVLDLATSNPNRMRELFNVNMQSTILELLGQPCFE 243 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E KQ+I+ S+SFG++IT+ +++AI Y A +L +EHQ C + F++++P Sbjct: 244 FESSPKAKQQIVSSKSFGQKITELSILQEAISKYTHNAFNRLVAEHQLCGSLIVFLQSNP 303 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F ++PYY S + PT + ++ AAT +D +++ G ++K GVML + + Sbjct: 304 FDQSKPYYSKSLTYTFTQPTNNLMQLVKAATSLIDKLYKEGIEFKKCGVMLCELIKEEHR 363 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRY 411 + L D + LMT + +K G+ + + + W+ K S Y Sbjct: 364 TIGLLTDVEQLEKEQALMTAFQNIQSKFGKAKIAAGSCNLKNRDWEPKSERQSRNY 419 >UniRef50_Q0KKM4 Putative UV protection protein n=1 Tax=Plasmid pLB1 RepID=Q0KKM4_9ZZZZ Length = 420 Score = 355 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 162/419 (38%), Positives = 232/419 (55%), Gaps = 5/419 (1%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 DV FY S E +F P L G PV+VLSNNDGC +AR+ EAKAL V+MG+P FK +D R Sbjct: 6 VDVQNFYVSAERLFDPSLRGVPVLVLSNNDGCAVARSEEAKALHVRMGEPVFKIRDRIER 65 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIR 124 G+ SSNYELY+D++ R + + + S VEIYSIDE+F + + + ++R Sbjct: 66 HGMRLRSSNYELYSDLNRRFNAVIADHSDTVEIYSIDESFYRAPTLPSGLGDVEAAHKLR 125 Query: 125 ATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDV 184 +L++ L +G+ T+TL+K+AN AK ++ GGVVDL + E +R+L PV +V Sbjct: 126 EDILRQVGLPTRIGLGPTRTLSKVANALAKATEKVWGGVVDLHDTELRRRLFEKWPVGEV 185 Query: 185 WGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTK 244 WGIG + +L +GI+T DLA R +VVLER VREL G C+ + Sbjct: 186 WGIGGALEARLRPLGIRTTADLAAMPPAVARDVGSVVLERLVRELNGIECVDFKLEPDAL 245 Query: 245 QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYY 304 + +R FGE + +R+A+ AARAAEK+R++ + F S + N P Sbjct: 246 KNTAVTRQFGEPVKTLEELREAMARRAARAAEKIRAQGLVASRLIAFAHGSRYRPNPP-- 303 Query: 305 GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDN 364 S S +L PT D R I+ + +A++Q G Y K GV+L D QG Q +LF Sbjct: 304 SASRSARLSPPTNDPRIILRIVGQMTEAMFQPGGVYTKCGVLLEDLTPQGHGQADLF--A 361 Query: 365 APRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ-QWQMKRAMLSPRYTTRSSDLLRVK 422 P + L+ MD LN++ GR T+ A QG + KR+ SP +TTR D+ + Sbjct: 362 VADPRAPALLAAMDGLNSRFGRNTIMLAAQGHGPKAFDTKRSQKSPAWTTRIKDIPIAR 420 >UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PAP1_CLOTS Length = 414 Score = 353 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 180/396 (45%), Gaps = 21/396 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+NAFYASCE L GKPVVV + G V+ + EA+ G+K G P ++ Sbjct: 4 ILHIDMNAFYASCEQSKDKSLKGKPVVVAGDPSKRHGIVLTASYEARKYGIKTGMPNWQA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 + L + +++ Y S ++++ L+E SP VE +SIDEA+ D+TG + Sbjct: 64 RTLCNDA--IFLKPDFDSYIQYSIKMINILKEFSPLVEQFSIDEAWVDVTGCEDLFGSPI 121 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + +I++ + L +GI++ K +AK+A+ K G+ +L LE+ + ++ Sbjct: 122 EIAHKIQSRIKDSLDLPCSIGISENKLVAKMASELKKPL-----GITEL-PLEKIKDMIW 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V+++ IG SKKL + GI T+ DLA+T + F+ F + G + Sbjct: 176 PLDVENLIWIGSARSKKLKSFGINTIGDLANTPMTFLINLFGKPGKDIYYFANGIDLSPV 235 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 +A T + + + TD +++ S + ++R ++ + +S +K + F Sbjct: 236 RPYAITAKSFGNTITLPRDYTDIEDIKRGFLSLSEMVGSRMRKQNFMGKTVSITVKDNNF 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGVA 356 + S + T + DI NAA + + + + GV + + Sbjct: 296 K------SITRSRT-IDYTVLTEDIFNAAMKLFKENYDTNFKIRMLGVSVSNLVKIDENI 348 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 QL LF NA ++L +D + K G ++ Sbjct: 349 QLCLF-QNAKYENLKKLNYAIDMIRDKYGFDSISRG 383 >UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU3_PELCD Length = 399 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 172/407 (42%), Gaps = 19/407 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AFYAS E + P+L G+PVVV + G V A + EA+ G+ P + Sbjct: 10 IILHLDMDAFYASVEQLDSPELKGQPVVVGGHRSRGVVCACSYEARTFGIHSAMPMSRAL 69 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + + Y ++S +V + VE S+DEAF D+T R + D Sbjct: 70 RLCPQA--IVQPVRMARYQEISRQVFDIFGRYTDLVEPLSVDEAFLDVTASRRLFGEGWD 127 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +IR V L + GIA K LAKLA+ AK GV + ER + + Sbjct: 128 IAEKIRRDVRDELGLPISAGIAPNKFLAKLASEQAKP-----DGVFQV--PERVDDFLLS 180 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ +WG+G + K L MG++TV DL D + + F ER ++ GE +E Sbjct: 181 LPLKRLWGVGPVLLKSLQKMGLRTVADLRHMDRADMERCFGQAGERLIQLAHGEDERPVE 240 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I +F + I + +M A+ R A +LR ++ +K + F+ Sbjct: 241 PQRSL-KSIGHEDTFDQDIFERETMHVALLDLVERVAARLRKHGLIGTTLTLKVKYADFS 299 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + S + +RD+++ A + L+ + GV L + Q Sbjct: 300 ------TVTRSRSVADGICHARDMLHLAKQLLEKTEAGKKPVRLLGVSLANLMDADSGQG 353 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 LFD+ R + L MD + + G L A ++ + R Sbjct: 354 LLFDE-DRRNQLKGLEQAMDHVRERYGEKGLCRATLVGHRRRSLTRE 399 >UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX85_SYNWW Length = 393 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 103/402 (25%), Positives = 168/402 (41%), Gaps = 21/402 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 CD++AF+AS E + P L GKPVVV + + G V + EA+ G++ P + Sbjct: 7 ILHCDLDAFFASVEQLDNPSLRGKPVVVGGSMHSRGVVSTCSYEARKFGIRSAMPIAQAY 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + V N Y ++S +V S L SP EI SIDEAF D++G + Sbjct: 67 RLCPQA--VFLPVNMPRYLEISKQVFSILSRYSPIKEIISIDEAFLDISGCSSLYGSPEK 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G I V LT+ VGI+ K LAKLA+ K + + +L+ Sbjct: 125 IGCLINEQVYSELGLTISVGISYNKFLAKLASDMDKPNG------LRIITESEALELLRP 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV +WGIG++ + LD +GIKT+ D+ D+ ++ G +E Sbjct: 179 LPVSRIWGIGQKTEQSLDKLGIKTIGDIQDSPPEWLEDKIGSAGRLFWELAHGIDRRAVE 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + +F E I D + + I +AA KLR E + I+ ++ S F Sbjct: 239 PEHE-RKSLGREETFPEDINDTAYLEKLIVQFAAELCRKLRQEALFAATITIKLRYSNFK 297 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGVAQ 357 + S + P + A+ L + + G+ LG + Q Sbjct: 298 ------TITRSKT-INPCNSDIIVTQIASELLHHSYNNKQPLRLFGLSLGQLSPAASLEQ 350 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 +LF+ + + + +MD + + G G + A + Sbjct: 351 GSLFEPQS-NADYKSIDRLMDEIRDRFGPGAIKRANLLPNKD 391 >UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales RepID=C6CYA7_PAESJ Length = 422 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 160/401 (39%), Gaps = 21/401 (5%) Query: 1 MFALCDVNAFYASCETVFRPD-LWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWF 56 + D+NAFY S P+ GKP V + G ++ + A++ G+K G Sbjct: 14 VILHLDMNAFYCSVHEAEEPEKYKGKPTAVAGSVELRKGIIVTCSYAARSKGIKTGMTVR 73 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL 116 + + ++ ++ELY S M E +P VE SIDE + D+TG + Sbjct: 74 QAMRMCP--NLIIIQPDFELYRKYSRGFMKIAREYTPLVEPISIDECYMDITGSKIFGSP 131 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + ++ + + L +G+A K LAK+A+ K + + L ++ Sbjct: 132 LEIAEALQKRIAEEWTLPCSIGVAPNKLLAKMASDMKKPNG------LTVLRLRDVPTIL 185 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 P D + G+G++ + KL+ + I+T+ LA D + + F + G + Sbjct: 186 WDKPCDVLHGLGKKTADKLERLRIRTIGQLAAADEELLIRQFGIYGSWMKSAAHGIDHSE 245 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + I + + +TD + + + A + A +LR + + I+ Sbjct: 246 VRADREQSKSIGHTTTLPYDVTDREDAHRILLNLADQTARRLRRQKLMASTVQITIR--- 302 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-- 354 + S L PT + I + A R D W+ + GV L + ++ Sbjct: 303 ---KPDMATITRSSTLRAPTHSTDMIYHEACRLFDEHWKGSEPARLLGVTLQNLTAEEET 359 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 QL+LFD +P E L MD L K G + AG Sbjct: 360 AVQLDLFD-YKEQPRKEALTKTMDVLRDKFGENAVLTAGML 399 >UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteobacteria RepID=A0LG84_SYNFM Length = 425 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 172/392 (43%), Gaps = 19/392 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E RP+ GKPV+V G V A + EA+ GV P F+ K L Sbjct: 37 IMHVDMDAFYASVEQADRPEFKGKPVIVGGARRGVVSAASYEARRFGVHSAMPVFQAKRL 96 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFG 120 G + Y ++S VM L +SP VE SIDEAF D+TG G Sbjct: 97 CP--GGIFLPVRMGRYKEVSKVVMDILCGISPLVEQISIDEAFVDITGTEALHGSPESLG 154 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R +++ + T +T VGIA K +AK+A+ K + + +R ++ LP Sbjct: 155 RRVKSQIRAATRVTCSVGIAPGKFVAKIASDIHKPDG------LTIVEDDRVEAFLAPLP 208 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ + GIG++ S+ L ++G++ + D+ F K + RG + + Sbjct: 209 VERIPGIGKKTSEALRSLGVRAIGDVLRFPASFWVKRLGAWGVKLHERARGVDPAPVIAY 268 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + +F E + D ++ + + + ++LR E R ++ +K + F+ Sbjct: 269 SQA-KSCSAEDTFPEDVDDVETLEKWLFVQSEEVGKELRRESFRGRTVTLKVKFADFS-- 325 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + S L T ++ I A+R L A+ + + + GV + + + Q + Sbjct: 326 ----SITRSHTLREATDCTQLIFGTASRLLRAL-KLNRKVRLVGVGVSNLSAM-PEQKPV 379 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 F D + +L MD ++ + G G L Sbjct: 380 FSD-SMLVRQRKLDRAMDRIHERFGHGALRRG 410 >UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R0_DESRD Length = 397 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 165/394 (41%), Gaps = 21/394 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E P+L G+PV+V G V A + EA+ GV+ P + + L Sbjct: 5 ILHVDMDAFFASIEQQDYPELQGRPVIVGGGERGVVSAASYEARRFGVRSAMPISQARKL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFG 120 ++ Y ++S +VM+ L+ SP VE SIDEA+ D+TG R + G Sbjct: 65 CPNGN--FCHGRHKRYKELSRQVMTVLDGFSPCVEQASIDEAYLDITGTERLLGPPGEVG 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R ++ + RT L+ +GIA K +AK+A+ K G + E+ + + LP Sbjct: 123 RALQQAIRVRTGLSASIGIAPNKFVAKIASDWDKP------GGLTWIRAEQLQTFLDKLP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + G+G R S L+ +G+++V + F ++ G +++ + Sbjct: 177 VRKLPGVGPRTSALLERLGVESVGAVRRFSEAFWTDRLGEGGKQLWARAHGIDDSEVQPY 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + + D + + A R +LR E ++ I+ F Sbjct: 237 HAP-KSCGAEHTLPQDTEDEAILISWLLHEAERIGRELRREVMEAGTVTLKIRYDDFT-- 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGVAQL 358 + KL PTQ ++D+ +A L Q + G+ G+ G QL Sbjct: 294 ----TFTRCRKLSPPTQSTQDLYSAGVTLLRQQ-QLQRPVRLVGLSAGNLAPMGSGRRQL 348 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + F+ A L MD + + G ++ A Sbjct: 349 SFFE--ADSARRNSLDAAMDAVRERFGGTSVRRA 380 >UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C6BW91_DESAD Length = 389 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 108/396 (27%), Positives = 171/396 (43%), Gaps = 22/396 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E + P+L GKPV V S + + A + EA+ GV+ P + Sbjct: 5 IMHIDMDAFFASVEQLDNPELRGKPVGVGSMHERSVLSAASYEARKFGVRSAMPVRQALK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 L + VV S + Y ++S +VM+ L SP VE SIDEA+ D+TG Sbjct: 65 LCPQLQVV--SGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFGTPLQI 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+A + + T LT VGIA K LAK+A+ K + + E+ + + L Sbjct: 123 ARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDG------ISIITAEQVQDFLKTL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV+ + G+G++ +L + GI DL F ++ F + G + E Sbjct: 177 PVEKIPGVGKKALPRLRSYGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTE 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K +FGE ++D +++ + + R A +R R ++ +K F Sbjct: 237 GGAMKSS-SAENTFGEDVSDIHTLKTLLLKQSERIAADIRKHGVKGRTVTLKVKFPDFR- 294 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L + T + I A LDA G + GV + +F + QL+ Sbjct: 295 -----QITRSRTLDSRTSHAGTIYKTACSLLDAELPIG-PIRLIGVGISNFEERN-RQLS 347 Query: 360 LFDDNAPRPGS---EQLMTVMDTLNAKEGRGTLYFA 392 L DD S EQL +D + K G+ L Sbjct: 348 LLDDPEKPKESKRLEQLDKAVDQVRLKFGKDILTRG 383 >UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECH9_9ACTN Length = 417 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 107/401 (26%), Positives = 179/401 (44%), Gaps = 24/401 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKD 60 L D++AF+AS E + P+ GKP++V + + G V + EA+ GV P + + Sbjct: 27 GLMDLDAFFASVEMLDHPEWRGKPLIVGGDADSRGVVSTCSYEARRFGVHSAMPSAEARR 86 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L + + +++ Y ++S +VM+ L + +PRVE SIDEAF D+T G D Sbjct: 87 LCPQA--IWTHGHFDRYREVSAQVMAILADETPRVERVSIDEAFIDITPGRFAPEDPLQV 144 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I V +T +G+ KT+AK+A+ K + + + +++ ++AL Sbjct: 145 ARRISDRV-AALGVTCSIGVGCNKTVAKIASERDKPFG------LTIVRPGTEQRFLAAL 197 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + GIGR ++L M I T+ +L+ + F V ER + G ++ Sbjct: 198 PVSAMSGIGRSAEERLRRMRIYTLGELSRAPESTLASIFGVNGERMRQRALGLEISEVTS 257 Query: 240 FAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + R+F + +T+ + AI +LR + ++ +K S Sbjct: 258 LDEEREVKSVSNERTFAKDLTERGDIEAAIALLGESVGRRLRRQGLTGATVTLKLKYSYG 317 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + G +A +L PT D + A LD IWQ G + AGV + DF QG Q Sbjct: 318 S------GRTAQRRLPHPTDDENIFVAVALELLDKIWQKGMHVRLAGVGMSDFDHQGGIQ 371 Query: 358 LNLFDDNA----PRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 +LF + L +D + K G L F Q Sbjct: 372 TDLFCEIDGRGAQSSDRRDLSVAIDAVRDKFGDTALSFGRQ 412 >UniRef50_A6UXE7 Ultraviolet light resistance protein B n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6UXE7_PSEA7 Length = 360 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 224/358 (62%), Gaps = 5/358 (1%) Query: 64 RCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREI 123 G V + D+S RV+ L EL+PR+E+YSIDE+F DL G+ L +GR I Sbjct: 7 EHGPVLIDFLLHINGDVSARVVRVLRELAPRLEVYSIDESFLDLAGLGRP--LAGYGRHI 64 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 RA V + T + VGVGI+ TKTLAKLAN AAK+ + GVV + E+Q L+ P+ + Sbjct: 65 RAEVQRLTGMPVGVGISTTKTLAKLANWAAKRRSQ--SGVVVATRPEQQAALLKDAPLGE 122 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPT 243 VWG+GR++ L A+G+KT DLA D +RK F+VVLE+T+RELRGE C L+E Sbjct: 123 VWGVGRKLQAHLGALGVKTAWDLAQQDAWTMRKQFSVVLEKTIRELRGEACFALDEGPEP 182 Query: 244 KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPY 303 KQ I CSRSF R+T+ +R+A+ SYA RAAEKLR++ C+ + +I+T F +EP Sbjct: 183 KQMITCSRSFSRRVTELAPLREAVASYACRAAEKLRAQGDVCQLLQVYIRTGVFNPDEPR 242 Query: 304 YGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDD 363 Y +ASV L TP+ DSRD++ AA L+ I++ G+RYQKAGVML + S G Q +LF Sbjct: 243 YARTASVPLHTPSNDSRDLVQAALAGLEGIYRPGYRYQKAGVMLMNLASPGQVQADLF-A 301 Query: 364 NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 APRP S LM +D +N GRGT+ A W MK+ + SP YT R +L RV Sbjct: 302 PAPRPRSAALMATVDRINTNMGRGTVRLARVPALGGWSMKQELRSPGYTCRWDELPRV 359 >UniRef50_UPI0001C34BBE DNA-directed DNA polymerase n=3 Tax=Neisseria subflava NJ9703 RepID=UPI0001C34BBE Length = 344 Score = 340 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 152/344 (44%), Positives = 213/344 (61%), Gaps = 5/344 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY SCE VFRP+L P+VVLSNNDGCV+AR+ EAKALG+KMG+P+F+ K Sbjct: 1 MFALIDGNSFYCSCERVFRPELKNVPIVVLSNNDGCVVARSTEAKALGIKMGEPYFRVKH 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + +SSNYELYAD+S R+M T+ P VE+YSIDE F D++G+ +LT+ G Sbjct: 61 LVSQGRLKAYSSNYELYADLSRRMMETIAGCVPAVEVYSIDECFADMSGI---ENLTELG 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL--MSA 178 +IR VLQ + VGIA TKTLAK NH AK++ GVV + +L + + Sbjct: 118 CQIRQRVLQWVGIPTCVGIAPTKTLAKFCNHLAKRYPDHFRGVVVWGDWNETIRLRALRS 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 VD++WGIGRR + KL GI+T LD + D IR+ + V +ERT RE++G C L Sbjct: 178 QGVDEIWGIGRRTADKLSEQGIRTALDFVEADTATIRRRYGVTVERTQREMQGIVCDGLH 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 A +Q ++ SRSFG RI +++ A+ + + AE LR + +S F+ T F Sbjct: 238 PNAQPRQNLVRSRSFGTRIETLEALQAAVTHHVSLGAEALRKDGLTASAVSVFLHTDFFR 297 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQK 342 +EP Y NS + L+ T D+ + A R L I+++G+ Y+K Sbjct: 298 EDEPQYHNSLAQNLIVSTADTVHLNRIAQRLLADIYRSGYLYKK 341 >UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8L2_NATTJ Length = 408 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 169/407 (41%), Gaps = 27/407 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E P+L KPV++ + G V +A+ G+ P ++ + L Sbjct: 16 ILHIDMDAFYASVEKRDNPELEDKPVIIGGSRRGVVSTCCYKARKYGLHSAMPMYRAQRL 75 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 V + + Y +S + E +P VE S+DEAF D+TG N D + Sbjct: 76 CPHG--VYLRPDMDKYRRVSQEIKKIFLEFTPLVEPLSLDEAFLDVTGSLNLFGDAVNIA 133 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +I+ + + LT +G+A K +AK+A+ K +++ ++ LP Sbjct: 134 EKIQTQISDQLQLTCSIGVATNKFIAKVASDLKKPAGLTH------VPTGKEQDFLAPLP 187 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADT-----DIRFIRKHFNVVLERTVRELRGEPCL 235 VD +WG+G + + ++ + G T+ +L +I + K FN+ E T+ +G Sbjct: 188 VDKLWGVGEKTTARIKSRGYHTIGELQQMLAKAQNINSLAKSFNIT-EDTLLLAKGYDDR 246 Query: 236 QLEEFAPTKQEIICSRSFGERIT---DYPSMRQAICSYAARAAEKLRSEHQYCRFISTFI 292 ++ P + I ++F + +T Y + + ++ + +LR + ++ I Sbjct: 247 EVVPEEPP-KSIGQEKTFAQDLTAGSQYNQLIPHLLKFSEQVGARLRKAGYKGKTVTVKI 305 Query: 293 KTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI-WQAGHRYQKAGVMLGDFF 351 + S F + + T ++I A L + + + GV + + Sbjct: 306 RDSRFK------TWTKQKTVPE-TDQDKEIYAHAQELLQNMNLKPSDEIRLLGVTVSNLV 358 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 S QL+L N +QL +D + K G + A Q Sbjct: 359 SSTQQQLSLDMSNEQYEKEQQLQWTLDEMREKFGDDAIRRARLIFPQ 405 >UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DPO4_BACCR Length = 415 Score = 338 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 95/417 (22%), Positives = 174/417 (41%), Gaps = 22/417 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+N F+AS E P L GKP+ V N G +I + EA+ G++ P ++ Sbjct: 14 VILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLWE 73 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K L + +V N+ LY + S ++ L + +++ SIDE + D+T Sbjct: 74 AKRLCPQ--LVVRRPNFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPL 131 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + + I+ +L L +GIA LAK A+ K G+ L + +++ Sbjct: 132 EIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPL-----GITVLRKRDIP-EMIW 185 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V+ + GIG + ++KL+ + I T+ LA D IR + +G ++ Sbjct: 186 PLSVEAMHGIGEKTAEKLNEIHIHTIEQLAKGDEHIIRAKIGKHGIDLQKRAKGTDDREV 245 Query: 238 EEFAP-TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + S +F + + + + + + +++L+ I IK Sbjct: 246 DPSQMGQHKSVGNSMTFSKDMDEEKELLDMLERLSKSVSKRLQKRTLVSYNIQIMIKY-- 303 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQG 354 + S +L + RDI AA+R W G + GV + ++ Sbjct: 304 ----HDRRTVTRSKQLKNAIWEERDIFQAASRLWKQHWD-GDSVRLLGVTATEIEWKTES 358 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 V QL+LF E L+ V+D +N K G L Q +++Q + + L ++ Sbjct: 359 VKQLDLFS-FEEDAKKEPLLAVIDQINDKYGTPILQRGSQLLRKQEKSFQQKLENKF 414 >UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria RepID=B9M459_GEOSF Length = 420 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 172/396 (43%), Gaps = 22/396 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPV-VVLSNNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D+NAF+AS E P L GKPV VV S+ V + EA+A GVK G ++ K Sbjct: 14 IIMHVDMNAFFASVEQQNDPRLRGKPVAVVGSSKRTIVTTCSYEARAFGVKTGMALWEAK 73 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 +V + Y +S+ +M + + +P VE +SIDEAF D++G + + Sbjct: 74 SCCPNLILVVGKNR--EYTRISSLIMKLMYDFTPLVETFSIDEAFLDISGSLSLFGTPEN 131 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++A + + LT +GIA K LAKLA+ K G+ + E M Sbjct: 132 IASLLKARIGDQFGLTCSIGIAPNKLLAKLASDMQKP-----DGLTVIKPAEVALT-MDR 185 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL- 237 P+ D+ GIG++ K L +GI+T DL ++ +R+ F +V E G + Sbjct: 186 TPIRDMCGIGKKTEKSLTMLGIRTCGDLGRFPVKLLRQKFGIVGEALHLMGLGVDDSPVV 245 Query: 238 -EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 +E + + + S + + + + + + A ++R + + ++ + Sbjct: 246 PQEESDLVKSVGHSMTLEKDLEKREDILRYLLQLAEMVGRRMRRYGVAGKTVCLSVRYAD 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F + S + L T S +I A LD++ + + GV L + Q Sbjct: 306 F-----FTNFSRQLTLPEYTNLSAEIYRGAVTLLDSV-ELTQPVRLLGVKLSNLRHQD-E 358 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 QL LF+ L MD +N++ G ++ + Sbjct: 359 QLPLFE---GERKKAHLAKAMDEVNSRFGEFSVTYG 391 >UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class) RepID=A5CQW8_CLAM3 Length = 430 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 111/410 (27%), Positives = 178/410 (43%), Gaps = 23/410 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+A+ E + RP+L G PV+V + G V + EA+ GV+ P + Sbjct: 23 ILHIDMDAFFAAVELLERPELRGTPVIVGGSSGRGVVTSATYEARRFGVRSAMPMAQALR 82 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDF 119 L + V+ + E YA S VM +++P VE SIDEAF D+ G R + Sbjct: 83 LCPQATVI--GGHMEKYAHWSRVVMGIFRDVTPLVEPLSIDEAFLDVAGARGLFGSPAEI 140 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G IR V T LT VG A TK +AKLA+ K G++ + E + AL Sbjct: 141 GAMIRRRVHAETGLTCSVGAASTKFVAKLASTRCKP-----DGLLVIPAAETLP-FLHAL 194 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLE 238 PV +WG+G+ + L G++TV D+ADT + ++ R G ++ Sbjct: 195 PVGALWGVGKTTEEALLRRGLRTVADIADTPLPALQSMLGESAGARLHDLSWGRDPRRVS 254 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + +F + +TD +R+ + A R AE+LR R +S ++ S F Sbjct: 255 THREE-KSMGHENTFHDDVTDPEIVRRELLGQATRVAERLRRAGLTARTVSLKLRYSDFR 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + S L PT +R I + + + + G R + GV + Sbjct: 314 ------TITRSRTLSEPTDVARRIYDEIRDVYEQVARPGDRIRLVGVRAEQLDDADNRAV 367 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLS 408 L+D + +E+ +D + GRG + A + KRA +S Sbjct: 368 ALWDADEGWREAER---TVDQAAQRFGRGAIGPASLLRKP--GAKRATVS 412 >UniRef50_Q6MCK0 Putative SOS mutagenesis and repair protein UmuC n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCK0_PARUW Length = 393 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 148/395 (37%), Positives = 220/395 (55%), Gaps = 5/395 (1%) Query: 27 VVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMS 86 +VVLSNNDGCVI+R+ EAK LGVKMG+P+F+ K L + FSSNY LY D+S R+M+ Sbjct: 1 MVVLSNNDGCVISRSQEAKLLGVKMGEPYFQIKALCEFRNIQVFSSNYALYGDISERIMN 60 Query: 87 TLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLA 146 L E +P ++IYSIDEAF DL E++ V + + + +G+A TKTLA Sbjct: 61 LLFEHAPDLDIYSIDEAFLKYPSSVAPSDLVSLCHELQKKVKKWVGMPISLGLANTKTLA 120 Query: 147 KLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDL 206 K+AN AKK Q V DL N ++K++ + DVWGIGR + +KL+ M I T + Sbjct: 121 KMANDLAKKIQNFY--VFDL-NSSVRQKVLQNYLIGDVWGIGRNLKEKLNGMNIHTAWEY 177 Query: 207 ADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQA 266 A D IRK V+ ER + ELRG CL+ +E K+ ++ SRSFG +++ + +A Sbjct: 178 AQMDPSIIRKRLGVIGERILWELRGVSCLESDEKVS-KKSLLYSRSFGHVLSEITPLSEA 236 Query: 267 ICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAA 326 + +Y AEKLR++ + + F++ + +S + PT+D+ ++I AA Sbjct: 237 LSTYVYTVAEKLRAQGSLAKALYIFLEYQIQPGKKMRCYDSITEIFPAPTKDTGEMIKAA 296 Query: 327 TRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR 386 R L+ I++ RY+K GV+L D + + +LF N P QLM MD LNA+ G+ Sbjct: 297 KRGLNKIFRREERYKKCGVILLDLLPESSSNSDLF-LNPVDPKRTQLMNTMDALNARFGK 355 Query: 387 GTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 L+F G W+ ++ S + L V Sbjct: 356 KKLFFGAMGTDVSWKSRKDCSSKHNPSNWQQLPIV 390 >UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermophilum RepID=DPO4_SYMTH Length = 361 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 160/360 (44%), Gaps = 19/360 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E P L GKPV+V N+ G V + EA+ GV+ P + Sbjct: 8 IHLDMDAFFASIEQRDNPRLRGKPVIVGGSPNSRGVVSTCSYEARRFGVRSAMPSREALR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + V N+ YA + +V + + + +E SIDEAF D++G +D Sbjct: 68 LCPQA--VFIRPNHAKYAAVGRQVRAIMRRFTDVIEPLSIDEAFLDVSG----QDAVRVA 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 RE++ + HLT G++ K LAKLA+ K + + ER ++L+ LP Sbjct: 122 RELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDG------LTVITWERAQELLPTLP 175 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +WG+G + L A+GI T DL D +RKHF + + RG + + Sbjct: 176 VRKLWGVGPASEQALHALGIYTCGDLLAYDPDTLRKHFGKRADELILLARGIDPRPVVPY 235 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I +F TD + + + YA AE+LR + Y R ++ IK + F Sbjct: 236 REA-KSIGEENTFPVDQTDREYLSRLLERYADNLAEELRRQGLYARTVTVKIKWNVFVEG 294 Query: 301 EP----YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 P + + S L PT D+R I A + G + + G+ + + QG Sbjct: 295 GPKGGDFLQITRSQTLPMPTNDARTIGRVAREIFARVEWEGRKVRLLGLSVHNLVKQGEQ 354 >UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PEH3_9FIRM Length = 415 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 161/403 (39%), Gaps = 20/403 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D +AFYAS E ++ P L G+PV V+ + G V+A++ EAK GV+ GD ++ Sbjct: 8 ILHVDCDAFYASVECLYNPALRGRPVAVVGDPELRHGIVLAKSQEAKLFGVQTGDALWQA 67 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 + + + +++E Y S E S R E + +DE++ DLTG D Sbjct: 68 RQKCKE--ITFVPAHFEKYLSFSRMTKEIFSEYSDRCESFGLDESWIDLTGCTELFGDGP 125 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +IR + + +T VG++ K AKL + K G+ ++ + ++ + Sbjct: 126 AVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKP-----DGMTVIAY-DGFKEQVW 179 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV + +GR + KL + GI T+ LA I F+ F + G + Sbjct: 180 PLPVKTLLYVGRATTGKLKSYGITTIGALAQAPITFLEHRFGKIGRMLWMFANGLDTSPV 239 Query: 238 EEFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + I S + + ++ + + + +LR C+ ++ I+ S Sbjct: 240 SNIGAKSLIKSIGNSTTAPRDLITDQEIKITLYALCESISARLREHSFRCKTVALTIRDS 299 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 + L P+ ++++ +AA + G + GV + Sbjct: 300 SLT------SFERQLALKRPSCITQELFDAAFSLYKQHHKCGLPVRSLGVRAANLMLIDC 353 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 QL++F D A E+L +D + + G + Sbjct: 354 MQLSIFPDVARAQKQERLEETVDDIRRRFGHFAVQRGVMLTDP 396 >UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica RepID=DPO4_RHOBA Length = 396 Score = 335 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 169/411 (41%), Gaps = 22/411 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AFYAS E RP+L G+PVVV + G V A + EA+ G+ P + Sbjct: 1 MILHVDMDAFYASVEQRDRPELRGRPVVVGGSEGRGVVTAASYEAREYGIHSAMPGSRAI 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + YA + V +P V+ S+DEAF D++G + Sbjct: 61 KLCPHAD--FVRGRLDHYASVGRAVREIFHRFTPVVQPLSLDEAFLDVSGTIRLHGSPRE 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G IR T+ + L VGIA K +AK+A+ K + R+ + Sbjct: 119 IGINIRETIRRELDLPASVGIAPLKFVAKIASDIGKPNG------FVEVPADGVREFLDP 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV +WG+G+ KL +G +T+ DL D+ ++ E G Q+ Sbjct: 173 LPVSRLWGVGKVGQTKLQRLGYRTIADLRVKDLDALKSQLGRWGEHLWNLANGIDRRQVV 232 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I R+F E ++D S+ + + + A +LR + I+ + F Sbjct: 233 -VDHLAKGIGHERTFAEDLSDIESLNAVVSYLSEQTARRLRRARRLASTITLKYRREDF- 290 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGHRYQKAGVMLGDFFS-QGVA 356 S + KL TPT + +I+ A L + + + G+ LG Sbjct: 291 -----QTFSRARKLSTPTDSTLEILQVAEELLLEMRSREPRSVRLLGISLGGLTDADAPK 345 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QL+LF + S ++ T+ D + K G+ +LY A QW ++ Sbjct: 346 QLHLFGEETGENASSKVDTLSDQIATKLGKHSLYRASS---HQWVDRKNTK 393 >UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=C9KLE5_9FIRM Length = 395 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 164/402 (40%), Gaps = 24/402 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AF+AS E + KP++V + G V + EA+ GV P + + Sbjct: 6 LVMHVDMDAFFASIEQRDHEEYREKPLIVGGLSGRGVVSTCSYEARRFGVHSAMPIVRAR 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + + +Y Y +S ++ + +P VE SIDEAF DLTG+ Sbjct: 66 RLCPQG--IFVEGDYANYKAVSQQIFAIFARYAPVVEPLSIDEAFLDLTGMELLMESPRA 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + +++A + ++T L VGIA K LAKLA+ K + + + ++ ++ Sbjct: 124 YAEKLKAEIREKTGLVASVGIAPNKFLAKLASDLEKPDG------LVIITEQTKQAVLDP 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE-RTVRELRGEPCLQL 237 LPV +WG+G++ + +L+A+ I+T+ L T + + F + + G + Sbjct: 178 LPVGRIWGVGQKTAARLEALRIRTIGQLRRTPRERLVRAFGAHMADHLLALASGIDTRPV 237 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 P + I +F I ++ + + + + + +LR R + ++ F Sbjct: 238 APREPA-KSIGKEVTFPTDIESAEAVERVLLALSEKVGYRLRRHGCKGRTVQLKLRLGDF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + S L T R+I A A+ + G+ + F + G Sbjct: 297 R------TYTRSRTLAEATCYDREIYETALAFYRALGV-KQGIRLLGISVSGFDTSGAI- 348 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 +LF E L +D + + G + A ++ Sbjct: 349 -SLF---HEEARKENLYAAIDAIKKRFGEQGITKAQLLKKRD 386 >UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomycetales RepID=A6CAV0_9PLAN Length = 388 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 165/390 (42%), Gaps = 20/390 (5%) Query: 7 VNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 ++AFYAS E P+L G+P++V + G V A N A+ GV P + L + Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFGREI 123 F YA++S + + +P VE S+DEAF D++G + + + I Sbjct: 61 AH--FFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLFGNGREIAASI 118 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 + V L VG+A K LAK+A+ A K + + ++ ++ + LPV Sbjct: 119 KQEVRHSLQLIASVGVAPNKFLAKIASDADKPDG------LVVVEPDKIQEFLDPLPVSR 172 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPT 243 VWGIG+ +++ + +GI+T+ + + + + + F +G + Sbjct: 173 VWGIGKMATQRFNRLGIQTISQVRVLEPKILTELFGEQGLHLWNLSQGLDERAVIPERQA 232 Query: 244 KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPY 303 + I +F + D +R + + +LR + I I+ F+ Sbjct: 233 -KSISRETTFSSDVNDLEILRIILMDLVEDVSRRLRKNKLRGKTIQLKIRYDDFS----- 286 Query: 304 YGNSASVKLLTPTQDSRDIINAATRSLDA-IWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 + S+ + PT +R+I +A LD + + + GV + F S Q +LFD Sbjct: 287 -TFTRSITVSQPTDLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGFQSGSQHQKSLFD 345 Query: 363 DNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + + +L V D + ++ G ++ Sbjct: 346 E-EDQQKFSRLDQVKDQIASRFGSNSIIRG 374 >UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8G1R4_DESHD Length = 423 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 102/403 (25%), Positives = 169/403 (41%), Gaps = 23/403 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDG---CVIARNAEAKALGVKMGDPWFKQ 58 L D N++YASC P+L GKP++V + ++ + EA+ GVK P F+ Sbjct: 16 IVLFDANSYYASCHQAVNPELQGKPLLVAGDPRNRTGIILTASYEARFYGVKTAMPLFQA 75 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNC-RD 115 L V S ++ LY D+S ++ +E + +E+ S+DE F D G Sbjct: 76 LKLCPEA--VVLSPDFRLYLDLSRKMWEIVERYTDEDHIEVVSVDECFADFRGSHLLFGS 133 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAA---KKWQRQTGGVVDLSNLERQ 172 + R ++ +L+ L V VG++ K AKLA+ K + ++ E + Sbjct: 134 TEEIARRVQKEILEELGLGVSVGVSYCKIFAKLASDYQRDPKTRVKLPRSFTVIAPGELE 193 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGE 232 K+ L V ++ GIGR+ K+L +GI+T+ DLA + +RK F V + G Sbjct: 194 SKVW-PLGVGELSGIGRQTEKQLADLGIRTIGDLAQASPQALRKGFGVYGAKLYAWANGR 252 Query: 233 PCLQLEEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + K I S + + ITD + + A K+R E + ++ Sbjct: 253 DERPVTPEDQAKDHSIGRSITLPQDITDPEQGTEVLLFLADSVGRKVRREETKAQTLTVQ 312 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 +K + F + S L PT + I + + L W G + G+ Sbjct: 313 VKDAEFK------TRTYSTTLFEPTDSTDVIYRESLKLLAK-WPQGKPIRLLGLTASRLQ 365 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 +G+ QL+LF + +L +D L K G G L Q Sbjct: 366 -KGIEQLSLFQE--ESEEQTELDRTVDELRDKYGSGILMRGTQ 405 >UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q2KZS3_BORA1 Length = 360 Score = 333 bits (854), Expect = 8e-90, Method: Composition-based stats. Identities = 101/365 (27%), Positives = 156/365 (42%), Gaps = 21/365 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E RP+L G+PVVV V A + EA+ GV + + Sbjct: 8 IVHIDMDAFYASVEQRDRPELRGQPVVVAWTGARSVVCAASYEARRFGVHSAMAVSRAQR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L V ++ Y +S +V + +E S+DEA+ D+T T Sbjct: 68 LCPDA--VYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVTVNKLGLPSATAV 125 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IRA + + T LT G+A K LAK+A+ K G+ L + + + L Sbjct: 126 AEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKP-----DGLFVLRPA-KVLEFLQPL 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV V G+GR +L+++GI TV DLA + HF R RG +++ Sbjct: 180 PVRKVPGVGRVTQARLESLGIHTVGDLATCAPAELEHHFGRHGLRLHELARGLDEREVQP 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P Q++ +F + + +A+ AAR E+ R + Q R +KT F L Sbjct: 240 DQPL-QQVSAENTFERDLR-LADLGEALDRLAARVWEQARKKGQLGRTAVLKLKTDRFRL 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDFFS--QGVA 356 + S+ L P + ++ A R + H RY+ AGV + +F Q Sbjct: 298 L------TRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNFTDPAQSAR 351 Query: 357 QLNLF 361 Q +LF Sbjct: 352 QPDLF 356 >UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO42_BACSU Length = 412 Score = 333 bits (854), Expect = 8e-90, Method: Composition-based stats. Identities = 99/413 (23%), Positives = 168/413 (40%), Gaps = 18/413 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + L D+ +FYAS E P L +PV+V + G V+A AK GV ++ Sbjct: 6 VIFLVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWE 65 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-L 116 ++ V + Y D+S ++ + LEE + VE YSIDE F D+TG + Sbjct: 66 AQEKCPEA--VVLRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTP 123 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + + I+ +++ + VGI K LAK+A K + G+ L+ E + M Sbjct: 124 MEIAKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNK--NGIFTLTK-ENMKTEM 180 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV ++G+G R+ L+ MGI T+ LA + ++K + + G Sbjct: 181 WPLPVGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANGIDYSP 240 Query: 237 LEEFA-PTKQEIICSRSFGERITDYP-SMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + ++ I + + ++ + + + R+ + +S + Sbjct: 241 VSTSSLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNAGVMGQTVSVSCRG 300 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 + F + VKL PT ++D+ A R W G ++ GV L S Sbjct: 301 ADFDWPTGFN---RQVKLAEPTNSTQDVYEAVRRLFLTFWD-GKPVRRLGVNLSQLSSDD 356 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 + QLNLF D A L VMD + + G + A +RA Sbjct: 357 IWQLNLFQDYA---KKMSLGYVMDGIKNRFGDTAIIRAASLTAAGQAFERAAK 406 >UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_PELTS Length = 402 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 94/400 (23%), Positives = 166/400 (41%), Gaps = 22/400 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 L D+N+FYAS P L GKPV+V + G V+A + EAKA GVK G + Sbjct: 5 ILLADMNSFYASVHQAMEPRLKGKPVIVGGDPARRHGIVLAASVEAKACGVKTGMTVREA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 L + + + Y + S R++ +++ SP VE +SIDEAF D++G Sbjct: 65 AALCPQG--IFLKPRHSHYINFSARIIRIMKDFSPLVEPFSIDEAFMDVSGCGLLFGSSL 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + +++A + + VG+ K LAK+A K G+ L + K+ Sbjct: 123 EIAVKLKARIKNEVGVLCSVGVGPNKLLAKMAAGMQKP-----DGLTLLDFPDVPVKIW- 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV +++G+G R+ K+L + I T+ DLA ++ +++ F +V G + Sbjct: 177 PLPVRELFGVGSRLEKRLRDLNIHTIGDLARYPLQVLKQKFGLVGHILHLSASGIDYSPV 236 Query: 238 EEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + + I + Y ++ I ++R R +S +K + Sbjct: 237 DPCSLERVRSIGHQITLPRDYWGYNEIKVVILELCEIVCRRVRLGGYAGRTVSLTLKDTD 296 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F S + + PT + ++ A + L W + GV L Sbjct: 297 F------LWLSRARTMNYPTASADEVYRVAVQLLHQHWPPWKPVRMVGVSLAGLVKNRAE 350 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI 396 QL+LF + + +L D + + G ++ A Sbjct: 351 QLDLFGE---AERARRLHAACDRIKDRFGEHSILRAVSLT 387 >UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS21_DESOH Length = 384 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 162/397 (40%), Gaps = 20/397 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AF+AS E + P+ G+ VVV S+ G V A + EA+ GV P + Sbjct: 1 MILHVDMDAFFASVEQLDHPEWRGRAVVVGRSSGRGVVAAASYEARVFGVHSAMPMSRAL 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 L + E Y ++S RVM L+ +SP VE SIDEA+ D++G Sbjct: 61 KLCPDA--IVAPPRMERYKEVSARVMEILDAVSPLVEQVSIDEAYLDISGCERLHGTPET 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G+ I+ V +T VG+A K LAK+A+ K + + E + + Sbjct: 119 IGKNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKPDG------LMVILPEAADRFIET 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV V G+G K+L MGI+T+ D+ + K R RG ++ Sbjct: 173 LPVHKVPGVGSVTKKQLALMGIETLGDVVRLPDGVLSKKLGKFGRRLKELSRGIDDSRVV 232 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + P + + + + +R + A L+ + R + IK + F+ Sbjct: 233 PWHPA-KSVSEETTLSRDTAEKQELRHHLLRQAGDVCRHLQKLNARARVVFIKIKYADFS 291 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQ 357 + L P Q S I A+ L+ A + + GV + + + G Q Sbjct: 292 ------QTTRQTTLDAPVQSSDTIYRQASALLEKQTLA-QKVRLIGVGVTELVVTSGGVQ 344 Query: 358 LNLFD-DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 + LFD + EQ+ + ++ K G+ + Sbjct: 345 MELFDGEARRDSRWEQVDRSVSAISEKFGKTMVKRGS 381 >UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX0_BREBN Length = 413 Score = 333 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 170/412 (41%), Gaps = 17/412 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + L D+ +FYAS E P+L KP+VV + G V+A AK+ GV + ++ Sbjct: 8 IVFLIDMQSFYASIEKGANPELRNKPIVVAGDPERRSGVVLAACPIAKSYGVVAAEALWQ 67 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDL 116 + R+ +V E+Y +S ++ E + +VE YSIDE F D+TG + D Sbjct: 68 AQQKCRQ--LVVVRPRMEMYIRISMQITRIFEAFTDKVEPYSIDEQFLDVTGSVHLFGDP 125 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 +IR V T + VGI + K LAK+A K ++ GV L E + Sbjct: 126 LQMAAQIRQRVWMETGINCRVGIGENKVLAKMACDNFAK--KREEGVFWL-KRETLADTL 182 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP++ ++G+G R+ + MG+ + LAD + +H+ V E R G Sbjct: 183 WKLPIEKLFGVGSRMKRHFHRMGVYQIGQLADMRPAILTRHWGVNGEVLWRTAHGIDDSP 242 Query: 237 LE-EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + + +++ I + ++ + + R + +S + + Sbjct: 243 VALDSYDSQKGIGHHMTLPRDYHTASEIKVVLLELCEEVCRRARKKELMGSVLSVGCRGA 302 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 A G +KL T D+ + AA D WQ + GV LG V Sbjct: 303 DLAAG---TGFGRQMKLTEQTNDAMTLYEAACFLFDRHWQE-TPVRSIGVNLGQLVPDNV 358 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QLNLF DN L MD + ++ G+ + A ++ +RA Sbjct: 359 VQLNLFTDNH---KRRSLAQAMDDIRSRYGQDAILRAASVLEAGQAKERARK 407 >UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomycetales RepID=D1C0B2_XYLCX Length = 430 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 111/405 (27%), Positives = 172/405 (42%), Gaps = 20/405 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+A CE RP+L G PV+V G V+A EA+ GV+ P L Sbjct: 23 IMHVDMDAFFALCELARRPELRGLPVIVGGRGRGVVLAATYEARVFGVRSAMPMVSAMRL 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDFG 120 + V ++ Y D+S VM+T+ E++P VE SIDEAF D++G R T G Sbjct: 83 CPQA--VIVPPDHRRYTDVSRSVMATMAEITPIVEQISIDEAFLDVSGARRRLGPPTVIG 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +RA V +T VGIA+ K LAKLA+ AK L E + LP Sbjct: 141 ARLRAHVQAVHGVTCSVGIAKNKFLAKLASTHAKPDGM------LLVPDEASVPFLRTLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLEE 239 V +WG+G + L GI +V LADTD+R ++ VV G + Sbjct: 195 VGALWGVGEKTEAVLARWGITSVAQLADTDVRTLQAAVGVVHGAHLHDLAWGRDPRPVVP 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +FG D ++ + + A + R + R ++ ++T+ F Sbjct: 255 TERER-SIGNETTFGSDQHDLAAVEARLLELCDKVAARCREQGVVTRTVALKVRTNDFR- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG--VAQ 357 + S L PT +RD+ A L A+ G + GV + + Q Sbjct: 313 -----TLTRSRTLDGPTDVARDLYRVARELLAAVDLRGLPVRLVGVRAENLQERAGTAQQ 367 Query: 358 LNLFDDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 L L + + RP + + +D + + G ++ G+ Q Sbjct: 368 LTLDEAASERPQAHREAELALDAVRERFGTRSIGLGAGGVASARQ 412 >UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9LBG3_RUMHA Length = 426 Score = 330 bits (845), Expect = 9e-89, Method: Composition-based stats. Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 26/404 (6%) Query: 1 MFALCDVNAFYASCETVFRPD------LWGKPVVVLSN---NDGCVIARNAEAKALGVKM 51 + DVN+ + S E V+R + L P V + G ++A++ AKA GVK Sbjct: 7 VIFHIDVNSAFLSWEAVYRLEQGGTVDLREIPCAVGGDKTKRRGIILAKSLSAKACGVKT 66 Query: 52 GDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR 111 G+P + ++ S+++ +Y S + ++ L E SP VE YSIDEAF D+TG+ Sbjct: 67 GEPLTEALKKCPS--LIVVSAHHSMYRQYSQKFLNILREYSPSVEQYSIDEAFMDMTGME 124 Query: 112 NC-RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 + F +++ + + TV +GI+ K LAK+A+ K + V L E Sbjct: 125 KLIGNPVAFAHKLKNRISKELGFTVNIGISGNKYLAKMASDFEKPDK-----VHTLFPTE 179 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 + K M LPV D+ +GR ++ L +GI T+ DLA+TD+ ++ H E Sbjct: 180 IKTK-MWPLPVSDLLFVGRATTQVLKKLGIYTIGDLANTDVEILKCHLKKQGESIWNFAN 238 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G +E + + S + +TD + + + S A +LR + +S Sbjct: 239 GRDTSLVESESQGNKGYGNSTTIAFDVTDEGTAKMVLLSLCETVAARLRKDDVKAEVVSV 298 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 ++ F + S + PT + +I + D +W G + GV Sbjct: 299 SVR--DFEMK----TVSHQRVMAAPTNITGEIYDTVCVLFDELWD-GMPIRHLGVHTSRV 351 Query: 351 FSQG-VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 + Q++LFD N E++ +D + K G + A Sbjct: 352 SKEERGRQMSLFDLNTNYEKMEKMDMAVDKIRKKFGNNAIMRAS 395 >UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4_THETN Length = 384 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 94/362 (25%), Positives = 162/362 (44%), Gaps = 19/362 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E P+ GKPV+V + G V + EA+ G+ P + K Sbjct: 5 IIHVDMDAFFASIEQQDNPEYRGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMYMAKK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + + Y ++S ++ L +++P VE SIDEA+ D+T V ++ D Sbjct: 65 LCPQG--IFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVD--KNPEDIA 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EI+ V T LTV VGI+ K LAKLA+ K + + + +++ LP Sbjct: 121 LEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDG------LMVITEDMVPEILKPLP 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V V GIG + ++KL ++GI+TV DL + + F +RG +E Sbjct: 175 VTKVHGIGEKSAEKLRSIGIETVEDLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETM 234 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I ++ + + + Q + ++ +E+L E YCR ++ IKT+ FA++ Sbjct: 235 REI-KSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTADFAVH 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 ++ S DI A L+ W+ + G+ + + QL+ Sbjct: 294 TKSKTVDKYIRF------SEDIYEVAKGILEE-WKLEQYVRLIGLSVSNLSPVKYEQLSF 346 Query: 361 FD 362 D Sbjct: 347 LD 348 >UniRef50_C9M6E1 UmuC protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6E1_9BACT Length = 429 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 136/408 (33%), Positives = 210/408 (51%), Gaps = 7/408 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + LCD + F+ SCE VFRP+L G+PVVVLS+NDGCVI+R+ EAK LG+ M P+FK Sbjct: 7 LIGLCDGDNFFVSCERVFRPELNGRPVVVLSSNDGCVISRSNEAKRLGIPMCAPFFKIAP 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L RR G+ S N E+Y +MS+R+M+ + + S +VE YS+DEAF +L+ + + D Sbjct: 67 LVRRHGMTALSGNMEMYREMSDRMMAVIAQFSDQVEQYSVDEAFFNLS-IASLTDPAAHC 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R T+ +R L V +G A +KTLAK A+ K ++ G V L E ++++P Sbjct: 126 LALRRTIARRIGLPVSIGAAPSKTLAKAASEMTK--GKEPG--VRLIRPEETACAVASMP 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ VWGIG+R ++K+ + GI+ V L +++ HF++ + ELRG L Sbjct: 182 VERVWGIGKRTARKMLSFGIRLVPQLTARPNGWLKGHFSIREVQIADELRGLKRFPLSSQ 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 T Q I +R+ + + + + +LR H + FI+TS F+ Sbjct: 242 EETPQSIQVTRTSAGPLRTEDELWDGLIRHILGGTARLRRHHLAAGRMELFIRTSYFSSQ 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + AS PT D + A + L ++Q G Y+ +GV D QL Sbjct: 302 SRFASSRAS--FSPPTDDDLACLRAGRQILSRVFQPGWNYRASGVRFSDLSPSQPRQLTF 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLS 408 D +LM +D LNA G GT+ A + + + +M S Sbjct: 360 ADQLPGTRKRHRLMEAVDALNADLGAGTVLPAALLSKNRSAAQHSMTS 407 >UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomycetales RepID=C5BW73_BEUC1 Length = 415 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 171/396 (43%), Gaps = 22/396 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E + PDL G+PV+V + G V+A EA+A GV P + + L Sbjct: 23 ILHVDMDAFFASVELIRAPDLRGRPVIVGGEHRGVVLAATYEARAFGVHSAMPMTRARAL 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDFG 120 + V ++ Y ++S VM L +++P +E S+DEAF D++G R Sbjct: 83 CPQA--VVIPPDHARYEEVSRVVMGLLADVTPVLEQVSVDEAFLDVSGARRRLGSPVAIA 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR+ + + + VG+A TK LAKLA+ AK + L + +LP Sbjct: 141 TAIRSRIREVAQIPASVGVASTKFLAKLASQTAKPDG------LLLVPEAASVPFLHSLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE-RTVRELRGEPCLQLEE 239 V +WG+G R + +L GI++V LA T +++ R + Sbjct: 195 VGALWGVGERTAAQLREWGIESVEQLAHTPPDVLQRRLGRAGGARLYDLAWNRDPRPV-T 253 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A ++ I +F +TD + + + A R A +LR R ++ ++ S F Sbjct: 254 VARVEKSISSEHTFVTDVTDAAELGRTLLEQAHRCARRLRRGGFLARGVTIKVRMSDFT- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV--AQ 357 + S +L P+ + D+ AA L A+ + GV + + Q Sbjct: 313 -----TLTRSRQLDHPSDVAHDVYAAARALLAAVTIPRDGVRLLGVRVDQLTAAAATPVQ 367 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 L L DD AP ++ MD + + G L A Sbjct: 368 LALDDDAAP---RREVEVAMDDVRDRFGADALGAAS 400 >UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWI6_HALOH Length = 385 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 157/395 (39%), Gaps = 22/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQ 58 D++AF+AS E + P+ KPV+V N G V + EA+ GVK + Sbjct: 5 IMHVDMDAFFASVEQLDNPEFRRKPVIVGGIDLENRGVVSTASYEARKYGVKSAMSVVEA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 + L + + Y ++S ++ +P VE SIDEAF DLTG Sbjct: 65 RRLCPEG--IFVKGRHSRYREISEKIFRIFNTYTPLVEKVSIDEAFLDLTGCHRLFGSSV 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + G++I+ + ++ LT +G++ K LAKLA+ K + + K+++ Sbjct: 123 EIGKKIKNKIKEQLGLTASIGLSYNKFLAKLASGMDKPDG------FFIIDDNNVDKILN 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V +VWGIG++ + L + GIKTV L ++ + RG + Sbjct: 177 KLCVGEVWGIGKKTEQLLLSKGIKTVGMLRHLSKSDLKGILGKQGLQLYYLARGIDDRHV 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E + + I +F + + D + + + + R A +LR + ++ + Sbjct: 237 EPGSDI-KSISHEETFSDDLIDPDEVMSHLMNMSERVARRLRKNCLKGSTVFIKVRYNN- 294 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + + D+ I + + G+ + + Q Sbjct: 295 -----RVTLTRRTTIKEYVDDTDSIYRTGLLLIKKHNLLSKPIRLLGIGMANLTDNNGIQ 349 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 L+LF D R ++L + +D + + G ++ Sbjct: 350 LSLFTD---RVRKKRLTSTIDKIKDRYGEKSITRG 381 >UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteria RepID=Q1IRF1_ACIBL Length = 425 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 97/410 (23%), Positives = 166/410 (40%), Gaps = 24/410 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN--DGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AF+ S E +F P L GK VVV + G V A + A+ GV P Sbjct: 17 VIFHVDMDAFFVSVEELFDPSLKGKAVVVGGHRDERGVVSAASYAARKFGVHSAMPLRTA 76 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-T 117 L + + + E Y + S + L++ SP+VE+ SIDEA+ D+TG Sbjct: 77 AKLCPDA--IFVNGHPERYREYSGKAFEVLKKFSPKVEMASIDEAYLDMTGTERLHGPPL 134 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + + T L +GI ++ +AK+ + AK GV+ + + + ++ Sbjct: 135 KAAHALHQFMKSETKLNCSIGIGTSRLIAKVCSDQAKPN-----GVLYIVPGQ-EASFLA 188 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC--- 234 L V + G+G+ +KL+ +GIK V DLA D F+R+ F + RG Sbjct: 189 PLSVRKIPGVGKVFEQKLNEIGIKKVGDLAKLDDAFLRERFGEWGLALAGKSRGLDAGGY 248 Query: 235 -LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 + + I +F D + I + ++R + R + ++ Sbjct: 249 FDRDVAVDEGPKSISHEHTFNTDTRDQEKLEAMIARLSEMVCRRVREHELHARTVQIKLR 308 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 S F + + L PTQ + A WQ G + GV + F Sbjct: 309 YSDFT------TITRAHSLEQPTQLDTVVAETARTLFRDNWQRGRTIRLIGVHVAGF-DD 361 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 QL+L S+ L +V+D + K G + A G++ +++ K Sbjct: 362 VPQQLDLLTQTHDDKVSKAL-SVVDRMRDKFGENAVSLA-TGLKSRFREK 409 >UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus RepID=C5D272_GEOSW Length = 414 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 166/368 (45%), Gaps = 22/368 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAK-ALGVKMGDPWF 56 + D N+F+ASCE P L GK VVV + G V+A N AK G+ P + Sbjct: 11 VIFHVDCNSFFASCEIARDPSLKGKAVVVAGDPKERKGVVLAANYIAKQRFGIYTTMPLW 70 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL 116 + K + +V ++ LY ++S +V L +P +E SIDE + D+T + Sbjct: 71 EAKKRCPQ--LVVLKPDFHLYREISEKVFQFLATFTPVLERASIDEGYLDITDCYSLGSP 128 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 D +I+ +LQ H+ V +GIA K LAK+A++ K G+ L + K++ Sbjct: 129 LDIAEQIQKELLQTLHIPVSIGIAPNKFLAKMASNMKKPL-----GITVLRKRDVP-KVL 182 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV ++ GIG + +KKL+++GI T+ +LA + ++ + R G Sbjct: 183 WPLPVQEMHGIGDKTAKKLNSIGIFTIGELAKAEKVTLQNLLGITGVRLKEWANGIDPRP 242 Query: 237 LEEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ + K + I S + +T+ + + + A + +++ + + I+ S Sbjct: 243 VDPESGEKWKSIGSSTTLPRNVTEERILLEVLRDLAQSVSNRMKQKGVVSSTVQIMIRYS 302 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--Q 353 F + S P Q++ +I A L W G+ + G+ D F + Sbjct: 303 NF------QTITRSKTWENPFQEAEEIFQRAVYLLKRHWN-GNPVRLLGITAVDVFDKKE 355 Query: 354 GVAQLNLF 361 V QL+LF Sbjct: 356 AVKQLDLF 363 >UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM Length = 415 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 161/402 (40%), Gaps = 25/402 (6%) Query: 1 MFALCDVNAFYASCETVFRP------DLWGKPVVVLSN---NDGCVIARNAEAKALGVKM 51 ++ DVN+ + S + + DL P V + G V+A+++ AK GV+ Sbjct: 4 VYFHVDVNSAFLSWSALKKLRAGETLDLRTVPSAVGGDEEKRHGVVLAKSSPAKKFGVRT 63 Query: 52 GDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR 111 G+ F + ++ +++ Y S +++ L + +P VE YSIDEAF D+TG Sbjct: 64 GESLFSARLKCPE--LIVTPPDFDFYVQNSKALIAILRDYTPDVEQYSIDEAFLDMTGTE 121 Query: 112 NCRDL-TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 IR V + TV +G+A + LAK+A+ K + V L E Sbjct: 122 ALFGPPLTVAHTIRNRVREELGFTVNIGVASNRLLAKMASDFEKPDK-----VHTLFPEE 176 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 K M LPV ++G+G K+L+ GI T+ DLA T+ R I F + Sbjct: 177 VPDK-MWPLPVGSLFGVGPSAVKRLNQCGIYTIGDLARTERRVIVGIFGTRGDTLWNYAN 235 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G + + S + + +T + + +LR++ + R ++ Sbjct: 236 GREADPVTKQTTRDNTYGNSVTLPQDLTRPEQADATLLALCDSVGRRLRTDGKTARVVTV 295 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 + + F S L PT + + A + + +W G + GV Sbjct: 296 QLVDNAFR------RTSHQRTLPDPTNSTDRLYEVALQLMRQMW-PGRPVRLVGVSAEKT 348 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + QL+LF D R E+L D L K G + A Sbjct: 349 GTDNFEQLDLFTDTTRRQKQEKLDRTADALRRKFGGAAVTRA 390 >UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNT4_9FIRM Length = 403 Score = 327 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 94/393 (23%), Positives = 164/393 (41%), Gaps = 21/393 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIA-RNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P+ GKPV+V ++ V+A + EA+A GV P K ++ Sbjct: 5 IMHVDMDAFYASVEQRDHPEWRGKPVIVGGSSRRGVVATASYEARAFGVHSAMPAVKARE 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTDF 119 L V +++Y +SN + + + +E S+DEAF D++G+ L Sbjct: 65 LCPDA--VFVLPRFDVYKSVSNEIHEIMLHYAVEIEPLSLDEAFMDISGLCGKYETLGAV 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 GR I+A + ++T L GIA K LAKLA+ K + + +++++++ L Sbjct: 123 GRAIKAEIKEKTGLVASAGIAPNKFLAKLASDLDKPDG------LRIIPYGKEKEILAPL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G +KL G T+ D+ + R G +E Sbjct: 177 PVRRLWGVGHVTERKLRNAGFLTIGDIQKAPFAKLASVLGNQASLIQRLSFGIDDRAVEA 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I ++ + +T+ + + I ++ A++LR R IS ++ + F Sbjct: 237 SRRI-KSIGDESTYEKDLTESADIDRQIAIHSDVVAKRLRRHKLAGRTISLKVRFASFR- 294 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S+ L T +I AA I+ + GV + + ++ Sbjct: 295 -----TVTRSLSLEEGTDLQEEIYAAALELKKRIY-MNEGVRLIGVTASNLAPP-LETVD 347 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 LF R + VMD + K G L Sbjct: 348 LFS--TMREKQVKAAAVMDAIQEKFGEHALRKG 378 >UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCT4_9FIRM Length = 397 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 94/397 (23%), Positives = 162/397 (40%), Gaps = 21/397 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E + P+ +PV+V + G V + EA+ GV P + + Sbjct: 12 IMHVDMDAFFASVEQLDHPEYRNRPVIVGGLSGRGVVSTASYEARRFGVHSAMPMKEALE 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDF 119 + + Y Y ++S ++ E SP VE SIDEAF DLTG+ D+ Sbjct: 72 RCPKG--IFVEGRYGRYLELSQKIRQIFHEFSPLVEPLSIDEAFLDLTGMERLVGDIPAL 129 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G I+ + + T LT VG+A K LAKLA+ K + + ++ L Sbjct: 130 GLRIKERIKKETGLTASVGLAPNKFLAKLASDLKKPNG------LVIIRQSEAASRIAPL 183 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ ++GIG R + L GI+T+ DLA D F+ F E +R G + Sbjct: 184 PISRIFGIGARSASLLTRFGIRTIGDLAACDASFLSPLFGKNTETILRFAHGLDNRPVIP 243 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +Q + +F + + D+ + + + + + +LRS ++ +KT F + Sbjct: 244 -DEKRQSLGRELTFEKDLRDHAVILEILWNLSQEVGFRLRSAGLSGYTVTLKMKTQDFKV 302 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++ S+ P Q +I+ + GV + Q ++ N Sbjct: 303 ------HTRSLSSDLPLQLDEEIMERVKILTRRN-PLRDPVRLLGVTVSHLVPQESSEQN 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI 396 LF + + Q +D L + G + I Sbjct: 356 LF---SKSDRNTQRSLAVDALKKRFGETIIKKGAPPI 389 >UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia RepID=B9MMT7_ANATD Length = 411 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 162/399 (40%), Gaps = 23/399 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N FYAS E +++P+L KPV V G V+A+N AK+ G++ GD ++ Sbjct: 4 VILHCDLNNFYASVECLYQPELRNKPVAVCGESELRHGIVLAKNQIAKSYGIQTGDVIWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDL 116 +V N+ LY S V E + +E + IDE + D++ R Sbjct: 64 ALKKCP--NLVILKPNFPLYIRFSKLVQRIYSEYTDLIEPFGIDECWLDVSQSTGILRSG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 EI+ + LTV VG++ K AKL + K V + E ++++ Sbjct: 122 RKIAYEIKERIKSELGLTVSVGVSFNKVFAKLGSDYKKPDA------VTVITKENFKQIV 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP D+ +G KKL + I T+ D+A + ++++ E G Sbjct: 176 WPLPAKDLLYVGSATEKKLSSRAIYTIGDIAKSSPEYLKRILGKWGEVLWIFANGLDTTP 235 Query: 237 LEE--FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + F + I S + +T Y I + A++LR ++ C + +I+ Sbjct: 236 VTPPLFEDNIKGIGNSITLPRDLTCYEDAEYVIRMLSESVAQRLRQQYLKCYTVQVWIRD 295 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQ 353 S + + KL PT +R+I A W + + GV D + Sbjct: 296 SF------LFSITRQEKLKNPTFLAREISQKAFEIFKKHWNFKNSIRSLGVRALDLVCAN 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 QL D+ + EQL +D + + G+ + A Sbjct: 350 SFYQLEF--DSLKKFKLEQLEKTVDQIRRRFGQSAVLPA 386 >UniRef50_Q46L62 DNA-directed DNA polymerase n=2 Tax=Prochlorococcus marinus RepID=Q46L62_PROMT Length = 425 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 147/423 (34%), Positives = 232/423 (54%), Gaps = 6/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + D N FYASCE + P + GK +VVLSNNDGC+IAR++EA+ +G+ MG P+FK K+ Sbjct: 4 VILQIDGNNFYASCEQMIDPSIKGKGLVVLSNNDGCIIARSSEARRMGIPMGQPYFKLKN 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + SSNYELY D+SNR+M L + +EIYSIDEAF + + + L +G Sbjct: 64 KLNQLNINVRSSNYELYGDISNRLMQLLRKNCEELEIYSIDEAFGTIKRPKE-KCLYKWG 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +++RA V Q + + +GI +TK L+K++NH AKK Q G+ D+ +E + + + Sbjct: 123 KDLRALVYQNIGIPISIGIGETKVLSKISNHLAKKIQ-TNSGIFDIGRVENKDHYLDLIN 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VD VWGIG+R+SK L GI +L D I+ + VV R EL+G C+ ++E Sbjct: 182 VDKVWGIGKRMSKWLKDRGITNARELRDMSSDQIKGKYGVVGLRIQNELKGNLCIPIKEN 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + ++EI SRSF I + QAI Y A+ KLR +Q I+ F T+ + + Sbjct: 242 SSDRKEICVSRSFAHPIDSLDDLSQAIIKYVLIASAKLRKYNQLSSAITVFTNTNTHSKD 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 ++ + A+ K+ PT +S+ +I + I++ + KAGV+L S Q + Sbjct: 302 --FFRSEATEKISVPTSNSKIMIEKSLSLTKEIFKPYKNFIKAGVILHKLQSNQYKQNLI 359 Query: 361 FDDNAPRPG--SEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 FD + ++L V+D +N+K G T+ + + +W +R LS TT ++ Sbjct: 360 FDAQNIKEELYLQRLDNVIDNINSKNGIDTINWGSSMMDTEWSPRRKNLSSIKTTNIENI 419 Query: 419 LRV 421 + Sbjct: 420 PTI 422 >UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVJ8_9FIRM Length = 405 Score = 324 bits (830), Expect = 5e-87, Method: Composition-based stats. Identities = 97/403 (24%), Positives = 164/403 (40%), Gaps = 27/403 (6%) Query: 1 MFALCDVNAFYASCE----TVFRPD---LWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ + S E PD L V+ + G V+A++ AK G+ Sbjct: 11 LIFHVDVNSAFLSWESAKRLRDNPDALDLRTINAVIGGDEKMRHGVVLAKSPSAKKYGIM 70 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P + +V ++ELYA S + + LEE++P +E SIDEAFCD+TG Sbjct: 71 TGEPLSHARQKCPE--LVVVPPDHELYAASSRKFIEILEEVAPVIEQCSIDEAFCDMTGT 128 Query: 111 RNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 D F +++ + + TV +GI+ K LAK+A+ K + V L Sbjct: 129 EKLYGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDFEKPNR-----VHTLFPE 183 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E K LPV+ ++G G+ +K+L ++GI T+ LA D + + +F + Sbjct: 184 EMATKFW-PLPVESLYGCGKTTAKRLRSLGITTIGALAKADRQMLLSNFKSQGDYLWESA 242 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G + +P + S + +TD + + S ++R + Y + Sbjct: 243 NGISSSAVTAESPANKGYGNSVTLPYDVTDTENAHHILLSLCETVGARIRYDKAYISVVQ 302 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 I + F + + L + T + I AA + D W + GV Sbjct: 303 VQIVDNDF------HHRCKQLSLPSATNVTEKIYEAACNAFDQGWDHA-PIRLLGVSTSK 355 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + Q NLFD +L + +D + K G + A Sbjct: 356 ATDESYEQYNLFDQ-DKFERLSKLNSAIDKIRDKYGDDAIVRA 397 >UniRef50_B5TTR9 RumB n=6 Tax=Bacteria RepID=B5TTR9_9BACT Length = 375 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 206/377 (54%), Gaps = 7/377 (1%) Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEEL-SP-RVEIYSIDEAFCDLT 108 MG P F+ K+L + + SSNY LYA+MS R + L E +P EIYSIDE F DLT Sbjct: 1 MGVPLFQLKELVEQHNITVLSSNYALYAEMSRRFIKVLAEFVTPQEQEIYSIDECFLDLT 60 Query: 109 GVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSN 168 + DLT + I + + L +GI +TKT AK+ANH AKK GV +L + Sbjct: 61 AYASNYDLTAYAHLILDRLSRWLGLPACIGIGRTKTEAKMANHIAKKNS-YLKGVCNLVS 119 Query: 169 LER--QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTV 226 ++ L ++ V +VWGIGR+ +KKL+++ I TVLD IR F+VV+ RT+ Sbjct: 120 MDYCSIEGLYQSIEVSEVWGIGRKHTKKLNSLSINTVLDFVCASPLMIRDQFSVVMHRTL 179 Query: 227 RELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 EL+G C+++E+ K++II SRSFG+++ +++AI Y A +LRSE+ C Sbjct: 180 LELQGISCIEIEQSPKAKKQIIASRSFGQKVYSCEDLKEAITLYVQDAVSRLRSENLLCG 239 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVM 346 I +F++++PF +EP+Y S S L P+ +S + AT +D ++Q ++K GV+ Sbjct: 240 CIISFVQSNPFDTSEPFYNKSLSYALPDPSDNSLLLSKIATSMVDQLYQKNIGFKKCGVI 299 Query: 347 LGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRA 405 L + +LF D S +LM +D + K G+ + + + W M R Sbjct: 300 LTCLEPKATHIYDLFTDMNKIESSNKLMDSLDDIQNKFGKRKIGLGASMLPDRNWNMSRN 359 Query: 406 MLSPRYTTRSSDLLRVK 422 LSP Y + L+ VK Sbjct: 360 KLSPNYF-KWDQLMSVK 375 >UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF38_9DELT Length = 409 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 108/423 (25%), Positives = 179/423 (42%), Gaps = 27/423 (6%) Query: 7 VNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 ++AF+AS E P L GKPV+V G V A + EA+ G P + + Sbjct: 1 MDAFFASIEQRDDPRLRGKPVLVGHAGKRGVVAAASYEARRFGCHSAQPMAVARRRCPQA 60 Query: 66 GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE-IR 124 V +E+Y +S + LE +P VE SIDEAF D++G + E IR Sbjct: 61 --VIVPGRHEVYLGVSAELFEILEGFTPVVEGLSIDEAFLDMSGTQRLHGPPRVAAERIR 118 Query: 125 ATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDV 184 TV +R LT VGIA K +AK+A+ K + + R+R + LPV ++ Sbjct: 119 QTVAERLRLTCSVGIASAKFIAKIASDQDKPDG------LTVVEPGRERAFLHRLPVREL 172 Query: 185 WGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTK 244 WG+G R + L+ G++T+ D+A+ + + + + G + + Sbjct: 173 WGVGPRTQEVLERYGVRTIGDIAELGLETLERDLGEHGRHLHQLSVGVDPRPVSPGRE-R 231 Query: 245 QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYY 304 +++ +FGE + P + + + R A++L ++ + R + ++ + F Sbjct: 232 KQVSHENTFGEDLRSRPEIEDWLLRQSTRVADRLVAKGLHGRKVHLKLRDASFT------ 285 Query: 305 GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH----RYQKAGVMLGDFFSQG-VAQLN 359 + L PTQ++R I A LD + G R + GV + DF QL Sbjct: 286 TWTRQCSLDEPTQEARVIFARARALLDRLEAEGKLRALRIRLTGVGVSDFRRDAPARQLE 345 Query: 360 LFD-----DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 L + A E + V+ + + G L AG G ++ A P +TR Sbjct: 346 LLPVEGAAEPATDDRGEAVQDVLSEVRRRFGGKALGLAGVGGIRREARDDAGAVPDLSTR 405 Query: 415 SSD 417 D Sbjct: 406 IDD 408 >UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DPO4_CLOTH Length = 399 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 99/399 (24%), Positives = 163/399 (40%), Gaps = 21/399 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N FYAS E ++ P+L KPV V + G V+A+N AK VK G+ ++ Sbjct: 4 VILHCDLNNFYASVECLYHPELRDKPVAVCGSIEDRHGIVLAKNYAAKKYKVKTGETVWE 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDL 116 K+ G+V +N+ LY S E + RVE + +DE + D++ D Sbjct: 64 AKNKCP--GLVVVKANHSLYYKFSKYARQIYEYYTDRVESFGLDECWLDVSESTLLFGDG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 T EIR + + +TV VG++ K AKL + K V ++ + + K+ Sbjct: 122 TKIANEIRERIKRELGVTVSVGVSYNKVFAKLGSDMKKP-----DAVTVITENDFKEKIW 176 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV+ + +G KKL+ M + T+ DLA+ F+ + G Sbjct: 177 G-LPVEALLYVGDSTKKKLNNMAVFTIGDLANCHSEFLVRQLGKWGYTLWSFANGYDTSP 235 Query: 237 L--EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + + I S + +T+ +R I + E+LRS + R + IK Sbjct: 236 VAKNDCEIPIKSIGNSLTAPRDLTNNEDVRILIYVLSESVGERLRSHNLKGRTVQISIKD 295 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQ 353 E G L T + +I A W + GV + D S Sbjct: 296 PELQTLERQAG------LDIHTSITSEIAQKAYEIFLKSWNWSKNVRALGVRVTDLVESD 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q++LF D+ R E L +D + + G ++ Sbjct: 350 TCTQISLFSDDIKRQKLEILDECVDRVRERFGYYSVRRG 388 >UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_9FIRM Length = 411 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 152/398 (38%), Gaps = 20/398 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N FYAS E + P+L KPV V + G V+A+N AKA GV G+ ++ Sbjct: 4 VILHCDMNNFYASVECMLNPELKNKPVAVCGSVEERHGIVLAKNYAAKAFGVSTGEAIWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K + +V +YE Y S + ++E Y +DE + D+TG Sbjct: 64 AKQKCQ--DLVIVEPHYEQYMKFSKLAREIYGRYTDQIEPYGMDECWLDVTGSGCMGTGF 121 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + EIR TV LT+ G++ K AKL + K + + R+ + Sbjct: 122 EIADEIRRTVKFELGLTISAGVSFNKIFAKLGSDMKKPDA------ITCIEADSFREKIW 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 P D+ G+GR K L + GI T+ +LA T F++ + G + Sbjct: 176 CHPASDLLGVGRATEKVLSSYGIHTIGELAATSDDFLKCRLGKNGLVIKKYANGLDDSPV 235 Query: 238 --EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ + I + + + + + + KLR+ + I+ I+ + Sbjct: 236 MRSDYVSPVKSIGHGITTMQDLENNAEVWCVMLELVQEIGTKLRAHKKKAGGIAISIRNN 295 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG- 354 E PTQ + A +Q H + V + F + Sbjct: 296 ELYTKEWQCRIGI------PTQSPTYLAKTAFALFAKNYQWEHPIRSVTVRAINLFEEDC 349 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q +LF D E+L ++ + + G+ + Sbjct: 350 PIQYDLFTDVKSLDRQERLDAAIEQIRFRFGKDAIKNG 387 >UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3I3_JONDD Length = 413 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 103/397 (25%), Positives = 173/397 (43%), Gaps = 20/397 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYAS E RP+L G+PV+V V+A + EA+ LGV+ P + + L Sbjct: 24 MHVDMDAFYASVEIAQRPELRGQPVIVAGGERSVVLAASYEARELGVRSAMPTQRARLLA 83 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDFGR 121 V + + YA +S VM L+ ++P VE SIDEA+ D++G+R + L+ + Sbjct: 84 PHA--VWVAPRHHEYARISRSVMDYLDTITPWVEQVSIDEAYLDVSGIRGPQGTLSARAQ 141 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+RA V +T VG+A K LAKL + AK G++ L + Q + ++ LP+ Sbjct: 142 ELRAQVKAHHGVTCSVGVAANKFLAKLCSTQAKP-----DGLLVLPRGQEQ-EFLNLLPI 195 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE-RTVRELRGEPCLQLEEF 240 + GIG + ++L G+ T+ D+A + ++ L R + RG + Sbjct: 196 GALMGIGDKSERRLKQHGLHTIRDVAALEPSYVVALLGATLGNRLIHLARGIDDRPVTPT 255 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ + +F + +R + S A +LRS R IS I+ F Sbjct: 256 R-VEKSVGAEHTFAQDEGSREVLRATVRSLADTVTSRLRSRGLLARTISVKIRDVNF--- 311 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + V L +P+Q + + A +D G R + GV + L L Sbjct: 312 ---HTITRHVTLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLLGVRAEQLVPEEGQPLTL 368 Query: 361 ---FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 + + +D + AK G + Q Sbjct: 369 TLEESLTDHHDTTRKTEETIDAIRAKFGSRAISLGVQ 405 >UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM3_DESBD Length = 412 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 95/416 (22%), Positives = 167/416 (40%), Gaps = 22/416 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + D++AF+ S E P L GKPVV+ + G A + EA+ G++ P + K Sbjct: 14 VILHLDMDAFFTSVEQADDPLLQGKPVVIGQSLRGVASAASYEARKYGIRSAMPIVQAKK 73 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-F 119 L V Y ++S ++M+ + L P VE S+DEA+ D++G R + Sbjct: 74 LCPHA--VFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIFGPPENI 131 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R ++A +L T+LT VGIA K LAK+A+ K G + + L Sbjct: 132 ARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKP------GGLTFIPPADVPAFLRDL 185 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G++ ++L +G+ T+ + + + G + Sbjct: 186 PLGRIPGVGKQFQEELRRIGVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGIDDSPVVP 245 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + + D + + + A R +LR + ++ IK F+ Sbjct: 246 GSDP-KSCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGLTVTLKIKFQDFS- 303 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L PT + +I AA L A + + G + +F Q Sbjct: 304 -----SITRSRTLARPTDITTEIFEAARMLLTA-EKLPRPVRLIGTGVSNFR---FVQAE 354 Query: 360 L-FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 L +A R S+QL MD + K G ++ A I++ + +LS + T Sbjct: 355 LPLMPDAGRKRSQQLDQAMDRIRDKFGNKSILRAEAAIRESDAVN-DLLSQKNRTS 409 >UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D1Q6_9CLOT Length = 435 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 99/405 (24%), Positives = 170/405 (41%), Gaps = 28/405 (6%) Query: 1 MFALCDVNAFYASCETVFR----P---DLWGKPVVVLS---NNDGCVIARNAEAKALGVK 50 + DVN+ + S E+V+R P DL P V + G V+A++ AK GV Sbjct: 22 LIFHIDVNSAFLSWESVYRLSADPQALDLRTIPSAVGGDAKSRHGIVLAKSTLAKQYGVT 81 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P + + + S ++ Y S+R+M LE +P E +SIDE F D+T Sbjct: 82 TGEPLAQALRKCPQ--LTVVPSRFDYYIKCSHRMMELLETYTPDHEKFSIDEIFLDMTQT 139 Query: 111 RNCRD-LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + + IR + TV +G+A K LAK+A+ K + T ++ + Sbjct: 140 IHLFGQPLEAANRIRERIRDELGFTVNIGVAPNKLLAKMASDFEKPDKCHTLFAHEIPSK 199 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE- 228 + LP+ +++ +G +K++ +GI T+ LA D+ ++ H T+R Sbjct: 200 ------LWPLPIRELFFVGGAAQRKMENLGIHTIGQLASCDLAVLKAHLGEKYAVTIRGY 253 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G + E P + S + ++DY + Q I S +LR++ CR + Sbjct: 254 ANGVDVDPVAEKDPINKCYGNSVTLSRDVSDYETACQVILSLCETVGARLRADRVLCRNV 313 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 +K F + S + L PT + + A R L W + GV G Sbjct: 314 CVELKDWEF------HTQSHQMILPEPTDSTSALYGYACRLLREFWDR-TPVRLIGVRAG 366 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 +QL+LFD + + L +D + +K G ++ A Sbjct: 367 KIDDDSFSQLSLFDSPS-NRKKKDLEKAVDQIRSKFGVDSIKRAS 410 >UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms RepID=A4CII2_9FLAO Length = 366 Score = 321 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 18/354 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E +P+L G+P+ V G V A + EA+ GV+ + + Sbjct: 10 IIHIDMDAFFASVEQRDQPELRGRPIAVGGGAKRGVVAAASYEARTFGVRSAMSGVQARR 69 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDF 119 L +V ++ Y ++S ++ E + VE S+DEA+ D+T R T Sbjct: 70 LCPE--LVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVTANRKGMPSATLI 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 REIR +L+ T LT GI+ K +AK+A+ K ++T E ++ + +L Sbjct: 128 AREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKT------VPPEDVQEFLESL 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + G+G+ ++K++A+GI T DL F+ HF R +RG ++ Sbjct: 182 EIRKFHGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVVRGVHDSPVQP 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + R+F E ++ M + + A + +LR+ ++ + I+ I+ S F+L Sbjct: 242 SRVP-KSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTITLKIRYSDFSL 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 + S L I+ AA L + + G+ L + ++ Sbjct: 301 Q------TRSRTLAEYIDSPERILAAARDLLYQQ-PLENSVRLLGISLSNLDTE 347 >UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=C4G590_ABIDE Length = 447 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 88/413 (21%), Positives = 159/413 (38%), Gaps = 36/413 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D N FYAS E + P+L GKPV V N G V+ + AK GVK G ++ Sbjct: 23 ILHSDCNCFYASVELLHHPELRGKPVAVGGNPEARHGIVLTADYTAKRYGVKTGMALWQA 82 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLT 117 K + ++ +LY S E + ++E + IDE++ D++ + D Sbjct: 83 KQVCP--DIIFLPPRMDLYLRFSRMAQEIYSEYTDKIEPFGIDESWLDVSESAGIKGDGY 140 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +EI + + +TV +G++ K AKL + K T G + + Sbjct: 141 AIAKEISERMKKELGITVSIGVSFNKIFAKLGSDYKKPDAITTMG------KDEYKAKAW 194 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ- 236 LPV ++ +GR S+K MGIKT+ DLA D + K + G Sbjct: 195 PLPVANLLYVGRATSRKFADMGIKTIGDLATMDEGILIKKLGKIGSVLHAFANGYDDSPV 254 Query: 237 -LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 LE + + + S + + + ++ + A A +LR CR + ++ Sbjct: 255 KLENTSAPVKSVGNSTTTPKDMKTDEDVKIVLYILAESVAARLRENGFRCRTVEISLR-- 312 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG---------------HRY 340 ++ + S VKL + + +I AA ++ Sbjct: 313 ----DKELFHFSKQVKLKNASNITAEIAEAAYLLYKKNYRLPADEEELKNSIPEFYQKPL 368 Query: 341 QKAGVMLGDFFSQGV-AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + G+ D + Q+++F + R ++ +DT+ + G ++ Sbjct: 369 RSIGICGTDLVTDYYWEQMDIFMNPRLREKQMKMDITVDTIRKRFGFYSIQRG 421 >UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteria RepID=A6NU31_9BACE Length = 414 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 110/418 (26%), Positives = 174/418 (41%), Gaps = 29/418 (6%) Query: 2 FALCDVNAFYASCETVFRPDLW--GKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWF 56 CD+N+FYAS E + P+L GKPV V + G ++A+N AKA+GVK + + Sbjct: 5 ILHCDLNSFYASVELLSLPELRESGKPVAVCGDPESRHGIILAKNEPAKAMGVKTAETIW 64 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--R 114 + + +V ++ + Y S V + + + VE +SIDE++ D+TG + Sbjct: 65 QARQKCP--DLVLLPAHRDQYRKYSRIVNAIYDRFTDLVEPFSIDESWLDITGSMHLWGG 122 Query: 115 DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 D IR TV T LTV VG++ K AK+ + K + E R+ Sbjct: 123 DGKAIADRIRETVKAETGLTVSVGVSFNKVFAKMGSDYKKPDA------TTVITRENFRQ 176 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG--- 231 L+ LPV D+ +G +K L G++T+ DLA D + + G Sbjct: 177 LLWPLPVTDLLFVGGAAAKVLRGYGVQTIGDLARFDPQALVTILGKQGAALHSYAAGTEH 236 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 EP + + P + + +F + +R + + + A +LR C + Sbjct: 237 EPVIPARDLPPP-KSVGSGLTFRRNLLGLEDVRAGLSALSDEVAARLRRHGLKCTTVQVT 295 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I+ F +L PT SRDI +AA L A W + V + Sbjct: 296 IRDPNFRD------ICRQKRLPAPTYVSRDIADAALELLLASWNLKLPIRALTVTGQNLV 349 Query: 352 SQGVA--QLNLFDDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 + A QL+LF NA E+L MD + K G + FA +Q +R Sbjct: 350 DEADAGEQLDLFAANAAPHRDKLERLERTMDKIRDKYGGTAITFASAVRGEQGGTQRQ 407 >UniRef50_Q8RNE6 UmuC protein (Fragment) n=6 Tax=Proteobacteria RepID=Q8RNE6_ECOLX Length = 225 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 221/225 (98%), Positives = 224/225 (99%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV NCRDLTDFG Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVHNCRDLTDFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIRATVLQRTHLTVGVGIAQTKTLAKLAN+AAKKWQRQTGGVVDLSNLERQRKLMSALP Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANYAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERT 225 VD+VWGIGRRISKKLDAMGIKTVLDLAD+DIRFIRKHFNVVLERT Sbjct: 181 VDEVWGIGRRISKKLDAMGIKTVLDLADSDIRFIRKHFNVVLERT 225 >UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibrio RepID=B8DIF6_DESVM Length = 481 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 159/363 (43%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E + P L GKPV V ++ G V A + EA+ GV+ P L Sbjct: 6 IMHIDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALPMSTALRL 65 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-FG 120 ++ YA++S+R+M L E SP VE S+DEA+ D TG+ + G Sbjct: 66 CPH--LIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMG 123 Query: 121 REIRATVLQRT-HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 ++A VL T LT VG A K LAK+A+ K + + E + + L Sbjct: 124 MAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNG------LFILYPEDVAEFLRTL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + G+G+R L+ +G++ D+ F + F G ++E Sbjct: 178 PVGRIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEP 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ K E +F E D +R+ + + A R LR + R I+ +K + F Sbjct: 238 YSEPKSE-SAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFR- 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ--GVAQ 357 S S L PT + I + A R LDA+ A + + GV + +F G Q Sbjct: 296 -----SISRSHSLPEPTASTETIFDEACRLLDALTLAD-KVRLIGVGVSNFGPAHHGPRQ 349 Query: 358 LNL 360 L L Sbjct: 350 LTL 352 >UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteriaceae RepID=C8WAH8_ATOPD Length = 444 Score = 319 bits (819), Expect = 9e-86, Method: Composition-based stats. Identities = 96/414 (23%), Positives = 171/414 (41%), Gaps = 38/414 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P+ GKPV+V + G V + EA+ GV Sbjct: 25 IGLLDLDAFFASVEQLDHPEWRGKPVIVGGSPHKRGVVSTASYEARKYGVHSAMASATAV 84 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + + Y Y++MS+ VM L++ +P VE SIDEAF D+T G + + + Sbjct: 85 KLCPQA--IWTPGRYNRYSEMSSLVMGFLKDETPLVEQVSIDEAFFDITPGRFSKENPLE 142 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I+ V +T +G+ KT+AK+A+ K + + ++ Sbjct: 143 ICKRIQKKV-AALGITCSIGLGTNKTIAKIASEQEKPRG------LTAVFPGTESHFLAP 195 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++ + GIG ++K L GI+T+ +L+ D ++ + + +G+ ++ Sbjct: 196 LPIEAMSGIGPAMAKTLHQQGIRTLGELSRADSTYLTSFVGNTASKMILRAQGKEVSEVH 255 Query: 239 EFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E A + + + R+F + D + +AI + +LR + ++ +K S Sbjct: 256 EAAHPRDVKSVSNERTFETDLFDKQEIEEAIRHISGVVGRRLRKKQLQGFTVTLKVKAS- 314 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-- 354 ++ ++ PT D A L IW+ G + GV + F + Sbjct: 315 -----ATESHTVQKRMSIPTDDEHLFAEIAVNLLPTIWKEGQPVRLLGVGISSFTDEDNS 369 Query: 355 -VAQLNLFDDNA---------------PRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q +LFD + PR L V D L K G + + Sbjct: 370 KPVQTSLFDQSEDTFNTGASVPTTKKKPRSDLRHLSEVTDKLKDKFGASVVQYG 423 >UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q0AWD6_SYNWW Length = 419 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 90/405 (22%), Positives = 161/405 (39%), Gaps = 21/405 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+N FYAS E + RP++ K V V + G V+A+N AK G++ G+ ++ Sbjct: 4 VILHSDLNNFYASVECLHRPEIRNKAVAVCGDPAARHGIVLAKNYLAKESGIQTGEVIWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDL 116 + +V NY LY S S + +VE + +DEA+ D+TG + Sbjct: 64 AQQKCPE--LVVVPPNYPLYLKFSRLARSIYASYTDQVEAFGLDEAWLDVTGSIHIFGSG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + EIR + ++ VG++ K AKL + K + + + ++ Sbjct: 122 IEMADEIRERIKLELGVSASVGVSYNKIFAKLGSDMKKPDA------TTIISKDNFKQTA 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP D+ +GR +K GI T+ D+A++D ++ E G Sbjct: 176 WPLPASDLLYVGRATCRKFARWGISTIGDIAESDPLVLKARLGKWGEVLWSFANGYDRSP 235 Query: 237 LEEFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + + S + + + + I + + A +LR CR + ++ Sbjct: 236 VVAMGEESIIKSVGNSITTPRDLENNEDVLLIIYALSESVAARLREHGFKCRTVHIHVR- 294 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQ 353 ++ + KLL P S DI A + + H + GV D + Sbjct: 295 -----DKNLFTFGVQGKLLRPGNISNDIAEKAMALFRSHYSWAHPIRSIGVRGCDLIAAD 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 QL+LF D R E++ +DTL + G ++ A + Sbjct: 350 SHEQLSLFTDEEKRIKQEKIEATLDTLRCRFGHFSVQRAVLLKDR 394 >UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJE1_DESAH Length = 384 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 94/397 (23%), Positives = 165/397 (41%), Gaps = 20/397 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIA-RNAEAKALGVKMGDPWFKQK 59 M D++AF+A+ E P+ G+P+VV N+ V+A + EA+ G+ P F Sbjct: 1 MILHMDMDAFFAAIEQRDHPETAGRPLVVGGNSKRSVVATASYEARRFGIHSAMPMFMAL 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 D ++ + YA +S ++M+ L E +P VE SIDEAF D+TG + Sbjct: 61 DKCSH--LIVIPPDKSKYAAVSGQIMTLLNEFTPLVEQVSIDEAFLDITGCERLFGSVEK 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I+ + Q T LT +G + K LAK+A+ K + + +++ Sbjct: 119 ICVAIKDRIKQETGLTCSIGASHLKFLAKIASDMNKPDG------IHIIKRTDTPEVIQT 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + V G+G R ++ +GI T+ D++ + K F + RG + Sbjct: 173 LAIKKVPGVGERAMDQMKQLGIITLGDISRIPHPILEKKFGKFATDLLNFSRGIDPSIIG 232 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 P + I + D M++ + ++A R +LR+++ I+ +K S F Sbjct: 233 TSGPI-KSISSESTLENDTLDMVVMKKHLLAHAQRVGRQLRAKNLLATNITIKLKFSDFT 291 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQ 357 + KL+ P S I A + + + + GV + F Q Sbjct: 292 ------QITRQTKLMVPICASTAIYREACTLFEQTAKT-RKIRLLGVGVSSFSTPDAPVQ 344 Query: 358 LNLFDDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAG 393 L LFD+ + L +D ++ + G T+ A Sbjct: 345 LELFDNIDQKDRRWAVLDRAVDRISHRFGAKTITSAS 381 >UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQX0_9ACTO Length = 445 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 96/406 (23%), Positives = 164/406 (40%), Gaps = 37/406 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+ S E + RP+L GKPV V G V A + EA+ GV P + Sbjct: 23 ILHVDMDAFFVSVELLDRPELAGKPVAVGGAERGVVSAASYEAREFGVNSAMPVARALRA 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 ++ Y+++S ++M L +++P VE S+DEAF D+ G R Sbjct: 83 CPHLTMI--PPRPGRYSEVSRQIMDILHDVTPLVEKLSVDEAFLDVGGARRLMGGPVRIA 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++RA + + + VGIA TK +AK+A+ AK + L + LP Sbjct: 141 TDLRARIRREVGVPASVGIAATKHVAKIASAHAKPDG------LLLIPRSATIAFLHGLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEE 239 V +WG+G + +L GI+TV +LAD + + R G+ ++ Sbjct: 195 VGALWGVGEKTRARLANQGIETVGELADAGPERLARILGRAHGTHLYRLAMGQDPRPVQT 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + ++ I +F E + D + + + + A A +LR H R ++ ++ + F Sbjct: 255 -SREEKSIGKEETFFEHVADRGKLERILLAQAHATARRLRRAHLTARTVAIKVRFADFT- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVAQL 358 + S PT + D+ A D++ +G + G+ Q QL Sbjct: 313 -----TITRSTTFARPTDLAADLYAGAKHLFDSVAVSGEGLRLLGLRAEQIVDQREGVQL 367 Query: 359 NL----------FDDNAP---------RPGSEQLMTVMDTLNAKEG 385 L F D A P E+ +D + + G Sbjct: 368 ALGADSDDEAWAFGDQAGEGMRQAFGVNPRLERAEAALDRIRDRFG 413 >UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatella RepID=C8NE97_9LACT Length = 352 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 158/365 (43%), Gaps = 21/365 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+AS E P+ GKPV+V N G V + EA+A GV+ P K Sbjct: 4 ILHVDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTAKAM 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + + NY LY ++S++V + + +E SIDEA+ D+T R T Sbjct: 64 KLCPKA--ILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTNNSRGIASATL 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I+ V ++T LT VG++ K LAK+A+ K + + E ++ + Sbjct: 122 VAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSG------ITVITPENAQEFIRT 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 +P+ D +G+G+ ++KL GI+T DL + F + R ++RG QL Sbjct: 176 IPIGDFYGVGKVSAEKLRRAGIETGEDLLHLSKAELESRFGNLGPRLYAQVRGISNDQLT 235 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ + R+ + TD+ + + + ++ A L+ R IS ++ S F Sbjct: 236 LYRE-RKSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRALASRTISLKLRDSNFN 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQGVA 356 S SV L +I+ A + + + + G+ + + Sbjct: 295 ------TTSKSVTLRDYFNKKEEILQLALQLFEEMMDE-KPIRLIGLSVSHLEKTDKIYK 347 Query: 357 QLNLF 361 QL LF Sbjct: 348 QLKLF 352 >UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3H3_ERYRH Length = 406 Score = 317 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 162/403 (40%), Gaps = 24/403 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 CD++ +A E + P L P+ V + G V+ARN AKA GVK + + Sbjct: 6 ILHCDIDYCFAQIEIMKNPSLADVPMCVGGDESKRHGIVLARNPIAKAKGVKTAETLNEA 65 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLT 117 + G+V +++ Y +SN+V E + +VE + IDEA+ D++ + Sbjct: 66 RRKCP--GLVIVPPSFDDYLTISNQVKDIYREYTDKVESFGIDEAWVDISDSLLLFGKPG 123 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 D EIR + LTV +G++ K AKL + K + + + ++ Sbjct: 124 DIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDG------LTILMESHVKSMIW 177 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV D+ +G K L+ MGI+T+ DLA D + H + G+ ++ Sbjct: 178 PLPVQDLLYVGPSTQKSLNKMGIRTIGDLACADENQLHTHIGKMGSLLKSFANGDDTSEV 237 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + + + +R+ + A + + R+ + + I+ + Sbjct: 238 NPHTDPAKSVGNGMTTPQDLVSIEEVRRVLFVLAESVSSRCRNIEKKGSVLRICIRNNQ- 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-A 356 S KL PT I+N + ++ W + + L D S Sbjct: 297 -----LETLSRQKKLNQPTNTVDQIVNESLFLIERYWDQKQPLRSITITLSDLVSTTQPI 351 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 QL+LFD++ + +D++ + G + A +Q+ Sbjct: 352 QLSLFDESV-----SAIDETIDSIRDRFGHHAIKRANVLLQKN 389 >UniRef50_Q0EYF1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYF1_9PROT Length = 410 Score = 317 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 107/393 (27%), Positives = 177/393 (45%), Gaps = 16/393 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYASCE P L G+P+ VLSN++ VIA++ +A+ALG++ G P ++ + + Sbjct: 10 IAHVDCDAFYASCEAARHPKLRGRPICVLSNHNAMVIAKSYDARALGIRTGTPVWEARRM 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDLTDF 119 + ++ Y +S ++ S L SP VE+YSIDE F D G+R + + Sbjct: 70 APHA--AFLTPDFRYYGQISQQMFSILRRYSPVVEVYSIDEGFIDFNGIRQLWKKTYREL 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIR V +TV VG++ ++TLAK+A+ K V + ++ ++ L Sbjct: 128 ADEIRHAVWHELGITVSVGVSVSRTLAKMASEHHKPNG------VTVVPVQAIATFLAEL 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++ GIGR + L I+T L A D R +++ + EL G L LE Sbjct: 182 GVGEIPGIGRSRAALLCRKDIRTALQFARADERLLQRLIGRHGQMLRHELNGRAILTLEC 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P + + + S G + + +A R L ++ + F+ Sbjct: 242 EPPLPKSMAKTASMGRISEKRRVIAAYLGYHALRLVADLVAKQLLVSRLYLFL------T 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 E + V L PT + I A +L ++ G RY+ GV+ + AQ + Sbjct: 296 LESFECRGLEVGLDLPTNSLKRINGAVHHALGRLFIEGERYRGCGVVATQLQREAHAQPD 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 LF +QLM ++ +N + G + A Sbjct: 356 LFGLMREDLRQQQLMQAVNAINRRFGEQAISTA 388 >UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GJQ9_KOCRD Length = 412 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 170/395 (43%), Gaps = 22/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVV-LSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++ FY E + P G+PV+V S V++ + EA+ GV P + + Sbjct: 17 ILHVDMDMFYVGVELLDAPQHRGRPVIVAGSGPRSVVLSASYEARRFGVHSAMPVSQARA 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 V + E YA S VM ++ RVE S+DEAF D++G +R C + Sbjct: 77 RCPSA--VLLEPHREAYAHYSRIVMDIFRSVTDRVEQLSVDEAFVDVSGAIRRCGPPVEI 134 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R +R T+ QRT LT VG+A+ KT+AK+A+ K + + E R ++ L Sbjct: 135 ARGLRRTIQQRTGLTASVGVAENKTVAKIASAHCKPDG------LLVVAPEHTRAFLARL 188 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLE 238 PVD +WG+GRR S+ L A G+ TV D+A T + + V + G + Sbjct: 189 PVDRLWGVGRRTSETLRAAGLATVGDIAGTPLPRLHALVGVASGSHLQQLALGHDPRPVT 248 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + R+F +++ +++ + A +LR + ++ + F Sbjct: 249 PTREE-KSLGAERTFQTDLSETAELKRVLLGLCHETAARLRRHGLRAGRVGLKLRYADFT 307 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-Q 357 S S L P + D+ A LDA+ + + G+ A Q Sbjct: 308 ------TISRSRTLGHPVTSAHDLYTEAAGLLDALGRRPQAVRLVGIRAEKLVGADHALQ 361 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 L+L +A +E+ MD ++ + G GT+ A Sbjct: 362 LSLDGRDAEWGAAEE---AMDRVHHRFGPGTVRPA 393 >UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=DPO4_CLOK5 Length = 400 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 168/405 (41%), Gaps = 27/405 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFK 57 + L D+NAF+ SCE+ P++ GKP V N G ++ N EA+ GVK K Sbjct: 4 VIFLVDMNAFFISCESTRHPEIIGKPAAVAGDPKNRSGIILTANYEARKFGVKTTMVLHK 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDL 116 L ++ ++ Y S VM L + +P +E SIDEA+ D+TG R Sbjct: 64 VLKLCP--NIIIIPPDHCFYKQKSKEVMGILSKYTPVIEKNSIDEAWLDMTGCERIFGRS 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 I + L +GI++ K LAK+A+ K G+ L + + KL Sbjct: 122 YQTAECIMKHINSELGLDCSIGISENKFLAKMASQMKKPL-----GITKLWKKDIELKLW 176 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV+ + GIG++ ++KL M IKT+ +LA+ D R++ K V + G Sbjct: 177 -PLPVEFMNGIGKQTARKLREMKIKTIGELANFDRRYLIKKLGKVGAEIHQFANGIDVSP 235 Query: 237 LEEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + + + I S + I+D S + + + + R ++ + IK S Sbjct: 236 VTPHSHKDVKSIGKSITLAHDISDIESAKVILMELSDKVGMTARKYNKKGHTVQINIKYS 295 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QG 354 F + +T T ++I +A L+ W + G+ L F Sbjct: 296 NF------QSITRQRT-ITETYLVKEIYSAGIEMLEKNWNERLPVRLLGISLSGFSKYNE 348 Query: 355 VAQLNLF------DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 Q+++F ++ + +++ +D++ K G + Sbjct: 349 DEQISMFNMLEIDNEKSSVRKIDKIEAAIDSIRKKYGDSIIKSGS 393 >UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria RepID=B9JZV6_AGRVS Length = 385 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 89/358 (24%), Positives = 151/358 (42%), Gaps = 17/358 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E +P+L GKPV V + G V A + EA+A GV P K Sbjct: 35 IIHVDMDAFYASVEQRDKPELLGKPVAVGGSAARGVVAAASYEARAFGVHSAMPSVTAKR 94 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 ++ +++Y +S+++ E +P +E S+DEA+ D+T ++ T+ Sbjct: 95 KCP--DLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIATEI 152 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIRA + T L GI+ K LAK+A+ K + + + + AL Sbjct: 153 ALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQA------VITPKNGPGFVEAL 206 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV G+G ++++ GI+T LDL ++F++ HF RG Q+ Sbjct: 207 PVKRFHGVGPATAERMQRHGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDERQVRA 266 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + +F E I D R + A + S + I+ IK S F+ Sbjct: 267 DR-IRKSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCESHDIKGKTITVKIKYSDFS- 324 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + S + D I+ A L +++ H + G+ L ++ Q Sbjct: 325 -----QATRSKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNTEESEQ 377 >UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidetes RepID=C6VYA9_DYAFD Length = 372 Score = 314 bits (804), Expect = 5e-84, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 148/372 (39%), Gaps = 26/372 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+ GKP+ V + G V + EA+ GV+ P + Sbjct: 13 IIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPTGRGVVATASYEARKFGVRSAMPSRQAI 72 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTD 118 L + ++ +E+Y +S + + +E S+DEA+ D+T + + Sbjct: 73 QLCPQ--IIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTEDKMGIGSAME 130 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++I+ + + HLT G++ K +AK+A+ K G + + M Sbjct: 131 IAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIG------PSKIERFMDQ 184 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV+ G+G+ + K+ M + T DL + HF R +RG +++ Sbjct: 185 LPVEKFHGVGKVTADKMKGMQLFTGSDLKKLTEEELVNHFGKTGHFYYRIVRGIDDREVQ 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 T + + +F +T M + + A +L ++ R ++ +K S F Sbjct: 245 THRET-KSLGAEDTFTYDLTTPDEMNKELDRIGVTVANRLETKKLKGRTVTLKVKFSDFT 303 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS------ 352 + + P D I + A + L+ + G + G+ L +F Sbjct: 304 ------QITRNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLSNFHEPEVKYR 357 Query: 353 --QGVAQLNLFD 362 + QL LF Sbjct: 358 KYKDPEQLELFP 369 >UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA62_9FIRM Length = 413 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 170/404 (42%), Gaps = 28/404 (6%) Query: 1 MFALCDVNAFYASCETVFRP-------DLWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ + S + + DL P V + G V+A++ +AK GV+ Sbjct: 8 IIFHIDVNSAFLSWQAAYNKKMGNKEVDLRSIPSAVGGDEAKRKGVVLAKSQKAKKYGVR 67 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+ F+ + ++ N+++Y SN++ L E S +E YSIDE F D T Sbjct: 68 TGESLFEARKKCP--NLLIVKPNFKIYRMYSNKLFDLLSEYSDTIERYSIDECFLDYTSS 125 Query: 111 RNC-RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + + EI+ + + TV +GI+ K LAK+A K + V+ L Sbjct: 126 QKLFGEPIKAAYEIKERIKRELGFTVNIGISNNKLLAKMAGDLKKPDK-----VITLFPE 180 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRE 228 E + K++ L +++++ +GR+ +KL+++GIKT+ DL + F+ +F Sbjct: 181 EIEEKML-PLTINELFMVGRKTKEKLNSLGIKTIGDLNKCSMGFLISNFKKAQGTMLYNY 239 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G ++ E + + I S + TD +++ + + +LR + I Sbjct: 240 SHGIDESEV-EISRQTKSIGNSTTLKNDTTDINEVKKVFLALSDSVGTRLRRKDLKGNTI 298 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + IK + F + S L T + I A + + W + G+ +G Sbjct: 299 TVTIKNNLF------HSYSHQRTLPYFTNSTNTIYEQAFKLFNEFWNND-AIRLLGISVG 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 V QL+L ++ +++ VMD L G+ + Sbjct: 352 GLNKDEVNQLSLIEEKIENEKMKKIEEVMDKLRDNYGQDIIKRG 395 >UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAW2_HELMI Length = 409 Score = 313 bits (802), Expect = 9e-84, Method: Composition-based stats. Identities = 88/408 (21%), Positives = 151/408 (37%), Gaps = 19/408 (4%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQK 59 L D+N+FYAS E P L G+PV+V + G ++A + EAK GVK + + Sbjct: 8 LLADMNSFYASVEMAHNPTLRGQPVLVCGDPERRHGIILAASREAKRRGVKTAMTVGEAR 67 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTD 118 + VC LY ++S ++ LSP VE YS+DE F D+ G + D + Sbjct: 68 AICPDA--VCVRPRMSLYLEVSWQIQQIARTLSPLVEPYSVDELFIDVRGAEHIWGDAVE 125 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 R V + + VG+ K L+K+A K + GV L ++ + Sbjct: 126 AAGIFRQRVWEAVKVPCSVGVGPNKFLSKMACDVEAK--KSPSGVA-LWRVDDVEAKLHP 182 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ ++ +G R+ + MG+ T+ DLA + ++ + F + G + Sbjct: 183 LPIGKMFMVGSRMERHFRNMGLLTIGDLAHYPVDYLMRRFGLRGAVYHNLAWGRDGSPVR 242 Query: 239 EFA-PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + S + + + + R + R +S ++ Sbjct: 243 PDSLEQTKSVGHSVTLPRDYHHSDDIELVLLELTDEVCRRARKLGKAGRTVSVGLRAYDL 302 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 G L +P+ S + A W G + V L G Q Sbjct: 303 T-----RGFYRQTTLPSPSNLSGPVFEKAQLLFRRHWD-GRPVRTVTVDLSGLEEDGTLQ 356 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 LF D +++ MD + G + A + RA Sbjct: 357 QELFRDMD---RQDRVSRTMDRIRDAMGTTAIVRASSLLPAGQARDRA 401 >UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0B0_9FIRM Length = 406 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 83/402 (20%), Positives = 170/402 (42%), Gaps = 24/402 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N+++ S E + P+L PV V N G ++A+N AK G+K G+ + Sbjct: 6 VILHCDMNSYFVSVELLKHPELKDLPVAVAGNPKNRHGIILAKNEIAKKYGIKTGETIWA 65 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL- 116 K+ + + S +Y+ Y S R+E +S+DE++ D+TG Sbjct: 66 AKNKCKDLEL--LSPHYDEYIKYHKLFNDIFYRYSDRIEKFSVDESWIDVTGSIKLFGTG 123 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + +IR V + +T+ G++ K AK+ + K + + + ++++ Sbjct: 124 KEIADKIRGEVREELGITLSAGVSFNKVFAKMGSEYKKPDA------TTVISRDNYKEVL 177 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV + + +G+ +K L++ GI T+ DLA + + ++ V + + G+ + Sbjct: 178 WPLPVSEFFMVGKITAKLLNSYGIYTIKDLAAAEPQILKAELGVKIYELIDSANGKSSDE 237 Query: 237 LEEFAPTKQ--EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 ++ + + I ++F E + +++ + + A++LRS + + + IK Sbjct: 238 VKYYKDNEDPMSIGHGKTFKEDLVTSTQVKKEVWGLSEMVAKRLRSHNLFAAGVKVVIKD 297 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 S F S KL PT + I A + A W + + + D Sbjct: 298 SDFK------SYSRQKKLRLPTDVTGHIAEEAFSLIKASWDFSKKLRAMSITGIDLRPDC 351 Query: 355 ---VAQLNLFDDNAPRP-GSEQLMTVMDTLNAKEGRGTLYFA 392 +Q ++F ++ VMD + K G ++ + Sbjct: 352 KDIGSQYSIFSQGEQEGIKEREVDKVMDEIKQKFGDQSIGYG 393 >UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRW0_ALIAD Length = 409 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 92/404 (22%), Positives = 158/404 (39%), Gaps = 26/404 (6%) Query: 7 VNAFYASCETVFRP-DLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 +NAFYASC P GKP+ V + G V+ + EA+A GVK P + Sbjct: 1 MNAFYASCHAAVDPARYAGKPIAVAGDPSTRHGIVVTASYEARARGVKPPMPVHQALARC 60 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 ++ ++ LY + +V + + E +P VEI SIDE + D+T V R Sbjct: 61 PE--LIVVRPDFHLYRAYARKVFAIVREFTPDVEIVSIDECYADVTHVPGGDRPVHLARA 118 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+A +L L +G+A K LAK+A+ K G+ +L E R L+ L ++ Sbjct: 119 IQARLLDSLGLPSSIGVAPNKFLAKMASDMKKPM-----GITEL-RSENIRSLLWPLAIE 172 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 + G+G +K+L +GI T+ DLA + + + G LE Sbjct: 173 HMHGVGPSTAKRLRRLGILTIGDLAVQSLDVLARALGPRAAELKARANGIDPRPLETEPQ 232 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 + + S + + + + + R A ++R R ++ ++ + Sbjct: 233 PPKSVGHSMTLAKDAQTFAEVEGVVMDLCDRVASRMRRYGLMGRVVAVAVRDRRMRTSR- 291 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA--QLNL 360 L T + + ++ AA IW + GV + + QL+L Sbjct: 292 -----HQDTLATYVRHTGELFQAARALFQRIW-PTEPVRLLGVSVEGLVPRDGQGVQLHL 345 Query: 361 FDD-----NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 +D E+L +D + AK G + Q+ Sbjct: 346 WDAVPTAGEPRDERLEKLERAIDEVRAKFGPSAIRLGRSLSGQR 389 >UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3M4_EXISA Length = 363 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 152/377 (40%), Gaps = 23/377 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AFYAS E RP+L GKPV+V ++ G V + EA+ GV + Sbjct: 4 LIIHVDMDAFYASVEQRDRPNLRGKPVIVGGPPHSRGVVATCSYEARKYGVHSAMSSRRA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 L ++ Y +S +VM + ++P VE S+DEA+ D+T Sbjct: 64 FALCPHAT--FVKPRFQAYRQVSAQVMEIFKSVTPLVEPLSLDEAYLDVTENSLLSTSGP 121 Query: 119 F-GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 F R I + +RT LT G+A +K +AK+A+ K + + L+ ++ Sbjct: 122 FIARYILGEIKRRTGLTASAGVAPSKFVAKIASGFEKPNG------LTVVPLDEVATFLA 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQ 236 L ++ + G+G+ ++ L G T+ DL T ++ F ++ G Sbjct: 176 PLSIEAMHGVGKVTAQTLYKSGYHTIGDLQQTRPEQLKGIFGHDRGQQLYELAHGRDTRP 235 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + ++ I +F I D + + + +L C+ ++ IKTS Sbjct: 236 VVAMRE-RKSIGSETTFAFDIDDPEEVFERVIPEMEDVLRQLDRRDLSCQTVTIKIKTSE 294 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QG 354 F S +KL PT D +I A R D + + G+ + D + Sbjct: 295 F------QARSHQIKLNHPTHDHDEIRRLARRLFDEM-NVTEPVRLIGLTVSDLIPRTES 347 Query: 355 VAQLNLFDDNAPRPGSE 371 QL FD+ E Sbjct: 348 TRQLT-FDELTKPSLEE 363 >UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomycetales RepID=C6WDG0_ACTMD Length = 430 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 168/395 (42%), Gaps = 22/395 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E RP+L PVVV + G V + N A+ GV+ P + L Sbjct: 31 LHVDMDAFYASVEIRDRPELARLPVVVGGTAHRGVVASANYLAREFGVRSAMPTAHARRL 90 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV--RNCRDLTDF 119 V ++ Y D+S VM +++P VE S+DEAF D+ G R + Sbjct: 91 APHA--VFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGALRRLRATPAEI 148 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +R V + +T VG+A TK LAKL++ K + + +R + + L Sbjct: 149 AARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDG------LMVVPKDRALEFLHPL 202 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVL-ERTVRELRGEPCLQLE 238 PV +WG+G+R +++LD +G++TV D+A + +RK V L E RG + Sbjct: 203 PVGALWGVGKRTAEQLDRLGLETVGDVAAAPLLRLRKAVGVALAEHLYALARGHDDRPVV 262 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ I +F D ++ + + R A LR++ R +S ++ + F Sbjct: 263 PYT-REKSIGAEETFEVDHFDRAVLKLELLRLSERTAASLRAKGLRGRTVSIKVRFADFT 321 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + S L T +R++ AT LD G + GV + + Sbjct: 322 ------TITRSKTLRVATDVAREVYATATSLLDDHVPPG-AVRLIGVRVEQLSEGAAGEQ 374 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 FD AP G + D + G + A Sbjct: 375 LAFD--APERGWREAEQAADQARTRFGTAAVRPAS 407 >UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class) RepID=C1A1E2_RHOE4 Length = 432 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 167/396 (42%), Gaps = 22/396 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+++FYAS E P L G+PV+V V+A + EAKA GV+ + + L Sbjct: 38 ILHADLDSFYASVEQRDDPTLAGRPVIVGGG---VVLAASYEAKAFGVRTAMSGGQARSL 94 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 + + Y+ S V + SP VE SIDEAF ++ G+ + G Sbjct: 95 CPQA--IVVPPRMSAYSQASKDVFDVFHDTSPLVEGISIDEAFLEVGGLAKIVGNPLQIG 152 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R V ++ L + VGIA+TK LAK+A+ AK G++ + E + + + LP Sbjct: 153 ANLRRDVAEQVGLPITVGIARTKFLAKVASAFAKP-----DGLLRV-PPEGETEFLHPLP 206 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ +WG+G+ + KL I TV D+A D I R + L + Sbjct: 207 VEKLWGVGKITAHKLRNFDIVTVGDIARHDESSIVSILGGGAGRHLYALSHNRDPRPVRA 266 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + + G + ++ S R + ++RS + R ++ ++ + F Sbjct: 267 YRGRSSMGAQHALGRGSHSRAELDASLMSLVDRVSRRMRSAQRTGRTVTLRLRFADFT-- 324 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ--AGHRYQKAGVMLGDFFSQGVAQL 358 + S L T D+ +++NA+ LD A GV + + G QL Sbjct: 325 ----RATRSHTLRRSTADTAELLNASMVLLDEAVPMIADKGITLIGVAVSNLDRDGAEQL 380 Query: 359 NL-FD-DNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 L FD P + L + MD++ K G L Sbjct: 381 ELPFDGPGFAGPDTVALDSAMDSVRKKFGSAALTRG 416 >UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKS4_METHJ Length = 368 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 87/365 (23%), Positives = 153/365 (41%), Gaps = 21/365 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 + D+++FYAS E PDL GKPVV+ G V + EA+A G+ P Sbjct: 17 IILHLDMDSFYASVEIRNNPDLSGKPVVIGADPMQGTGRGVVSTCSYEARAFGIHSAMPI 76 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 + L + + YA +S +M L ++ +E SIDEA+ DL+ R+ Sbjct: 77 SQAYHLCPHA--IFIPPHMATYAQVSATIMQILRGIAGEIEQVSIDEAYLDLSCDRSYEL 134 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 I+ + + LT VG+A ++ AK+A+ K + + + + Sbjct: 135 AAHHAANIKQVIRNQVGLTCSVGLAPSRIYAKMASEQQKPDG------LTVVSPDTLESF 188 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + LPV + GIG++ ++ L G++T+ D+A DI+ ++ F R + RG+ Sbjct: 189 LKPLPVGKIPGIGKKSAQVLINAGLQTIGDIARCDIQTLQDMFGSHAVRLHQIARGQDRE 248 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 L E + ++ I +F T + ++ + +L ++ Y R I I+ + Sbjct: 249 GLRE-SGKRRSISREHTFLRDSTSPDEILGSLHTMILSLCHELEEQNIYSRTIGIRIRYT 307 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F + SV L+ PT++ R I A +W + GV Sbjct: 308 GF------ITRTKSVTLMQPTREVRVIECAIDGLFTEMWDRS-PVRLIGVRFSGLIHPDP 360 Query: 356 AQLNL 360 Q +L Sbjct: 361 VQRSL 365 >UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiales RepID=A9KLV9_CLOPH Length = 432 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 98/413 (23%), Positives = 162/413 (39%), Gaps = 26/413 (6%) Query: 1 MFALCDVNAFYASCETVFRP-------DLWGKPVVVLS---NNDGCVIARNAEAKALGVK 50 +F DVN+ + S E +R DL P V+ N G V+A++ AK L + Sbjct: 18 IFFHIDVNSAFLSWEAAYRLHVLGESVDLREIPSVIGGDKENRHGIVLAKSTSAKKLKIH 77 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+ +V NY+ Y S +M L SP+VE YSIDEAF D++G Sbjct: 78 TGEALGAAVQKCP--NLVIIPPNYQRYVKASKSLMEILHRFSPKVEQYSIDEAFVDMSGS 135 Query: 111 RNCRD-LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 ++ + + TV +G++ K LAK+A K V + Sbjct: 136 ELLYGGPVIVANNLKDLIEEELKFTVNIGVSSNKLLAKMAGELKKPN-----LVHTMFPE 190 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E +K M LPV +++ +GR KKL +GIKT+ +LA TD++ ++ HF E + Sbjct: 191 EIPKK-MWPLPVGELFFVGRATEKKLFNLGIKTIGELAQTDVKILKAHFGKYGEVLYQFS 249 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G L + S + I + S + +LR + + +S Sbjct: 250 HGIDESPLFVPLEANKGYGNSVTTPYDIVTMEHANLVLLSLSETVCTRLRMDGVKGQCVS 309 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 + T F S L + + + ++ A R +W ++ GV Sbjct: 310 VSVTTDTF------QRASHQGMLFSASNTTMEVYRFACRLFKNLWDGRTPIRQMGVHTSR 363 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 + Q NLFD +L +D++ + G ++ A + M Sbjct: 364 ITKESTMQYNLFD-WDRYEKLSKLDETIDSIRKRYGDDSVMRACFLNTSTYHM 415 >UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EN92_ACIF5 Length = 378 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 146/377 (38%), Gaps = 27/377 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+A+ E P+L G+PV+V + G V + EA+ G+ + + Sbjct: 15 IIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAARAR 74 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + V + Y + S +VM L +P VE S+DEAF D+T Sbjct: 75 SLCPQA--VFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATADGVLAVR 132 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 REIRA + + T LT G++ K LAKLA+ K + + E ++ Sbjct: 133 IAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNG------LFVVPPEHGLAFLAP 186 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G KKL AMGI TVLDL + + F RG ++ Sbjct: 187 LPVGKLHGVGPATVKKLSAMGIHTVLDLRNASREVLIAQFGKAGLWFYEVARGIDSRPVQ 246 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ + R+F + + D M + A + + +L++ R +S + F Sbjct: 247 T-SRQRKSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQALGLAGRTVSIKARFPDFE 305 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR----YQKAGVMLGDF---- 350 + + + II L A + GV + Sbjct: 306 ------TVTRAHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVSGLVNVE 359 Query: 351 -FSQGVAQLNLFDDNAP 366 Q+NL ++ Sbjct: 360 AVPPEAGQMNLLEEPVD 376 >UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF6_9FIRM Length = 412 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 169/400 (42%), Gaps = 23/400 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+N+FY SCE + +P+L +PV V + G ++A+ AK GV G+P ++ Sbjct: 3 ILHVDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIWQA 62 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 K ++ F NYE Y +S + +VE Y +DE F D+TG + Sbjct: 63 KKKCP--NLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPE 120 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 EI+ + +TV VG++ K AKLA+ K E +K++ Sbjct: 121 KIAFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKPD------YCTFIYKENYKKIVW 174 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V D+ IG + +KKL+ + IKT+ DLA+ D +RK+ + + G ++ Sbjct: 175 PLKVQDMIMIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRV 234 Query: 238 EEFAP--TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +++ + I S + E + +Y +R I +++L + R ++ + + Sbjct: 235 KDYYQIIPIKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRLIENNYLARGVNVGYRKN 294 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI--WQAGHRYQKAGVMLGDFF-S 352 + S+ V L P+ + +I A ++ + + + + Sbjct: 295 NLS------HESSDVLLDYPSNSTLEISAKAMDVFLKNFTFKDDEKIRALYIRAIKLIQN 348 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + Q++LF+D L + + + G+ ++ + Sbjct: 349 REAIQIDLFNDVKKHFKYLSLEKAIYNIRNRYGKNSITYG 388 >UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LSC9_SYNAS Length = 435 Score = 311 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 110/417 (26%), Positives = 178/417 (42%), Gaps = 19/417 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D +AF+ SCE P+L GKP ++ G V + AK GV G P + + + Sbjct: 15 ILHIDGDAFFTSCEEAIHPELRGKP-IIAGGERGIVACASYAAKKQGVMRGVPLHQARKM 73 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL--TDF 119 G+V S+YE Y+ S R+ + + +P+VE YSIDEAF D+TG+R Sbjct: 74 CP--GLVILPSDYETYSLFSRRMFNVMRRFTPQVEEYSIDEAFADITGMRRPLRASYETI 131 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 I+ + + +TV VG++ TK LAK+A+ K + + L Sbjct: 132 AVNIKNEIARELGITVSVGLSITKVLAKVASKHRKPNG------FTCIPGKSIAIYLEHL 185 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL-E 238 PV+ +WGIG + L MG++T L+ A ++K F RELRG+ + Sbjct: 186 PVEKIWGIGHATASYLHKMGVRTALEFARLPEVLVKKRFTKPGVEIWRELRGDSVYPVCA 245 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E I +++F D + + A K R H I+ F+K + F+ Sbjct: 246 EEKSLYASISKTKTFSPASGDADYLFAHLMRNLESACIKARRYHLAASRIAAFLKRNDFS 305 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 ++L P+ ++ A +++ G Y+ G++L + Q Sbjct: 306 ------YAGREIRLNRPSVYPLELSIALRNLFIDVYRPGTLYRSTGIVLLELSGDSGTQY 359 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYF-AGQGIQQQWQMKRAMLSPRYTTR 414 LFDD + V D + AK G+ +L+ A I+ + KR + R TR Sbjct: 360 TLFDDVVRADRVRDIYRVTDEVGAKYGKHSLHLGASHFIELLGRGKRGEPTARERTR 416 >UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A0M5X6_GRAFK Length = 406 Score = 311 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 155/395 (39%), Gaps = 21/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++ F+ S E P+L KPV+V + G V A + E + GV G P + Sbjct: 7 IIHLDLDTFFVSAERREHPELNKKPVIVGGLGDRGVVAACSYETRNFGVHSGMPMKVARQ 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V+ N +Y S+ V + P E S+DE + DLTG+ + F Sbjct: 67 LCPAATVI--KGNASIYTKFSHEVTEVIRSKVPSFEKASVDEFYADLTGMDRFFGINQFA 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +E++ ++L+ T L + G++Q K ++K+A K + ++ + + ++ ++ LP Sbjct: 125 KELQQSILKETRLPISFGLSQNKIVSKIATGEGKPYAQK------IIDPGTEKNFLAPLP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ + +G + +KL +GI+ + + + + + G + F Sbjct: 179 VNKIPMVGNKTFQKLLNLGIRRIETIQKMPVEVLESVLGKNGRTIWKRAHGIDNPPIIPF 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ I R+F D + + + A A +LR ++ +S I+ S F Sbjct: 239 HE-RKSISTERTFNRDTIDMVRLHATLVAMAESLAYQLRRGNKLTSNVSVRIRYSDFQTY 297 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 S T +I ++ + GV G Q+NL Sbjct: 298 SKQAKIS-------YTSADHILIPKVEELFKQLYSRRMLIRLIGVRFSGLVG-GHYQINL 349 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 FDD+ L MD + + G ++ A Sbjct: 350 FDDSEEMLS---LYNSMDKIKKRFGEHSVMRAVSM 381 >UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiales RepID=A9KNH1_CLOPH Length = 400 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 102/405 (25%), Positives = 175/405 (43%), Gaps = 28/405 (6%) Query: 1 MFALCDVNAFYASCETVFR----PD---LWGKPVVVLS---NNDGCVIARNAEAKALGVK 50 + DVN+ + S E+V R P+ L P V + G V+A++ +AK+ G+ Sbjct: 7 LIFHVDVNSAFLSWESVHRLAADPESIDLRTIPSAVGGDKQSRHGIVLAKSTQAKSFGIV 66 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P +V N+E+Y S R+M+ L E +P + +SIDEAF D+T Sbjct: 67 TGEPLTHALQKCPS--LVVVPPNFEVYTRYSERLMNLLSEYTPTLNQFSIDEAFLDMTDT 124 Query: 111 RNCRD-LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + D +IR VL+ TV +GI+ K LAK+A+ K + L Sbjct: 125 YHLFGAPMDIANQIRDRVLKELGFTVNIGISTNKLLAKMASDFKKPNLCHS-----LFPS 179 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE- 228 E K M LPV++++ +G+ K +GI+++ DLA T++ ++ H + E Sbjct: 180 EIPEK-MWPLPVEELFFVGKSAKAKFGILGIRSIYDLAHTNVNILKTHLGNKYSALIHEY 238 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G +E P + S + + + D +Q + + + +LRS + C I Sbjct: 239 ANGIDEEPVEVTDPKAKGCGNSITLSQDVIDNAIAKQVLLALSETVGARLRSSNVSCSCI 298 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + IK + F + L T + I AA R D W + G+ Sbjct: 299 TVEIKYTNF------QTYTHQTVLPHQTNTTATIYEAACRLFDEFWDNS-PIRLLGIRTT 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 +Q++LFD N ++L + +D++ K G ++ A Sbjct: 352 KLDDTDFSQISLFD-NNQSDKFKKLDSAIDSIRNKYGIDSVKRAS 395 >UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIB1_KYTSD Length = 407 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 161/395 (40%), Gaps = 22/395 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYAS V RP+L G+PV+V + V++ EA+A GV+ P + + L Sbjct: 13 LHVDMDAFYASVALVDRPELRGQPVIVGGGHRSVVLSATYEARAFGVRSAMPMARARRLC 72 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGR 121 + VV ++E YA +S VM +++ V+ S+DEAF D+TG R Sbjct: 73 PQATVV--RPDHERYAAVSAAVMEIFRQVTHAVQPTSVDEAFLDVTGTSRRWGSPLQVAE 130 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR TV H+T VGI +AK+A+ AK G ++ E + L V Sbjct: 131 WIRRTVAAEQHITCSVGIGPNPFVAKVASGQAKP-----DGTRQVTPAEVV-SFLHPLDV 184 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEEF 240 +WG+G + ++L G+ TV +A T + +++ G ++ Sbjct: 185 GVLWGVGEKTQEQLARFGLTTVAQVAHTPVVTLQRIVGDHAGAALAERAWGRDPQRVRPV 244 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I ++F I D + + + R A + R+ R + ++ + F Sbjct: 245 VAE-KTIGNGQTFDHDIDDPRQVETRLLLLSDRVAARARTAGVMGRTVQVTVRFADFT-- 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG--VAQL 358 S L P+ SR+I A ++ R + V L Q Sbjct: 302 ----TVQRSRTLQRPSDVSREIHQVAREVFASLGLQRARVRMVRVTLSGLTPTDRTPRQG 357 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 L + P G + +D +A+ G G + A Sbjct: 358 ML---DEPEVGWREADAAVDRASARFGAGIVRPAS 389 >UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQS7_9BACE Length = 413 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 165/401 (41%), Gaps = 24/401 (5%) Query: 1 MFALCDVNAFYASCETVF-----RPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMG 52 +F DVN+ + S + DL V + G V+A++ A GV+ G Sbjct: 4 VFFHVDVNSAFLSWSALKLLKEGHDDLRLIASCVGGDEKSRHGIVLAKSILAAQAGVRTG 63 Query: 53 DPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN 112 +P + + G+V ++ Y S +++ ++E +P VE YSIDEAF D+TG++ Sbjct: 64 EPLYMARKKCP--GLVTVKPQFDWYVKNSRAMIAIMQEFTPDVEQYSIDEAFLDMTGMQT 121 Query: 113 CRDL-TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 + ++ + TV +GI+ + LAK+A+ K + T + Sbjct: 122 LMGPPLEAAARLKDRIRDELGFTVNIGISSNRLLAKMASDFEKPDKIHTLF------PDE 175 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 K M LPV ++G+G+ +K L+ MG T+ D+A D + + + G Sbjct: 176 IDKKMWHLPVGSLFGVGKSTAKALNNMGFYTIGDVAAADRGLLVSKLGKMGDMAWNYANG 235 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + + + S + GE ++ I S A A +LR++ + ++ Sbjct: 236 IESVAIVRHEAKENSYGNSVTTGEDVSSIDVALGIIMSLAESVALRLRTDGKKAGVVTVT 295 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 + + F +S L PT + I A + L +W+A + G+ G Sbjct: 296 LVDTEFN------RHSHQCSLEYPTNTTDVIYENAQQLLYEMWKADRPVRLIGISAGKAA 349 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + Q++LF D ++L MD + K G + A Sbjct: 350 HEEFEQMSLFAD-ERTDKLKKLDAAMDEIRNKFGEEAVVRA 389 >UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T119_9ZZZZ Length = 380 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 152/366 (41%), Gaps = 18/366 (4%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYA+ E + PDL GK V+V + N G V + EA+ G+ P Sbjct: 21 LHADLDAFYAAVEVLDDPDLAGKAVMVGGDPENRGVVATASYEARVFGIHSAMPMRTAVR 80 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDF 119 L + ++ Y +S VM + + VE S+DEA+ D+T + L Sbjct: 81 LCPHG--IIIHPRFDRYRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAVDAGRLPLAI 138 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 E++ V + LT+ VG +K++AK+A+ K G+V ++ E +R+ ++ L Sbjct: 139 ALELKNRVHENIGLTLSVGAGTSKSVAKIASDLHKP-----DGLVVVAPGE-EREFLAPL 192 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +WGIG + ++L A GI+T+ DLA + ++ F GE + Sbjct: 193 AVGKLWGIGPKTGQRLRADGIETIGDLASQSTGWFQRRFGKRALDVQSRAMGEDREPVRT 252 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + +F ++ ++ + A R A+ L + + ++ + + F Sbjct: 253 EREA-KSVSAESTFATDLSGEGTLYPHLSRLAGRVAQHLEGKQLKGKTVTVKARLADFT- 310 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + L PT I+ A R G ++ GV + F QL Sbjct: 311 -----TFTRQTTLPYPTGSDTVILETAWRLFSRELTPGRSFRLLGVGVSGFTEDEEFQLP 365 Query: 360 LFDDNA 365 LF + Sbjct: 366 LFGEEQ 371 >UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ51_9FIRM Length = 395 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 106/387 (27%), Positives = 175/387 (45%), Gaps = 24/387 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQK 59 ++ D+NAF+AS E + P L GKP+VV V + EA+A G+ K Sbjct: 4 IYFHVDLNAFFASAEILRDPSLKGKPIVVSGQTKRSVVSTASYEARAYGIHSAMSIILAK 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTD 118 L ++ +Y Y +S+ M+ + SP +E SIDE + D+T V + + D Sbjct: 64 KLCPDLEII--EGHYSYYRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQYKHPLD 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++ + Q+T L +GI LAK+A+ K G+ L + + KL Sbjct: 122 LAVLLQKAIYQKTGLGCSIGIGPNLFLAKMASDMKKPM-----GITVLRIRDVEAKLW-P 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADT-DIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV + GIGR+ K++A+GIKT+ DLA+ I+ + K F + + + RG L Sbjct: 176 LPVHKMRGIGRKTLPKVEALGIKTIGDLANYQPIQDLGKIFKNSTDSLLEKCRGIDRTPL 235 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E ++ + S + E I+DY +R + S + + +L E + R IS I F Sbjct: 236 -ELDWQRKSLGVSETLLEDISDYEELRGLLRSLSKKLHHQLEKEKRIGRAISIRITYYNF 294 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA- 356 S S+ + DI + A + D W+ + G+ + DF + A Sbjct: 295 R------NVSRSLSVKQGIYLEPDIFDLALQLFDQYWEYDEPVRLLGITITDFMDEHQAI 348 Query: 357 -QLNLFDDNAPRPGSEQLMTVMDTLNA 382 QLNLF++ P + ++D +N Sbjct: 349 QQLNLFEEEKIDPTQQ----IIDEINR 371 >UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9RDA6_AMMDK Length = 385 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 158/394 (40%), Gaps = 25/394 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 LCD++AF+A+ E P+L GKPV+V + G V + EA++ GV+ P K Sbjct: 4 ILLCDLDAFFAAVEQRDHPELRGKPVIVGGSLTGRGVVATCSYEARSFGVRSAMPLKKAL 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 L + + N Y +++ V++ +P +E+ SIDEA+ + + Sbjct: 64 RLCPQA--ILLPVNISRYREVAAEVLAIYRRFTPFIEVVSIDEAYLGVPS----GEGLAV 117 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+ V + L + +G++ K LAK+A AK + E +++ L Sbjct: 118 ARAIKEAVRKELDLPLSIGVSVNKLLAKVACDLAKPQGLKAL------WPEEVPQVLWPL 171 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + GIG + ++L A GIKTV DLA + ++ R G L Sbjct: 172 PVGVLPGIGPKTERQLQAKGIKTVGDLAAAPLYLLKMLLGSEALRFKEYSHGVDRRGLVL 231 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +F + + + +R A+ A +LR R ++ ++ + F Sbjct: 232 SRPPL-SFSKETTFPQDVQEPEVVRGALMRLAEDLGYRLRQNGYLARSVTLKLRFADFR- 289 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + + L T I A + + ++ G+ + + QL+ Sbjct: 290 -----TVTRTRCLAEGTNRDSLIYRTAWELFQK-FASSPPWRLVGIKVAELS--NWKQLS 341 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 +D L V+D L ++ GR + A Sbjct: 342 WLED-EQEERERMLALVLDALRSRYGRPVVRRAS 374 >UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutylicum RepID=DPO4_CLOAB Length = 396 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 171/400 (42%), Gaps = 25/400 (6%) Query: 1 MFALCDVNAFYAS---CETVFRPD---LWGKPVVVLS---NNDGCVIARNAEAKALGVKM 51 + DVN+ + S E + + + P V+ + G V+A++ AK G+ Sbjct: 4 VIFHVDVNSAFLSWTAVEKLKNGEDIDIRKVPSVIGGDEKSRHGVVLAKSTPAKKYGIVT 63 Query: 52 GDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR 111 G+ + + ++ F ++ Y S +M+ L+ +P +E YSIDE F D+T Sbjct: 64 GESLYHARKKCP--NILVFPPRFDTYRKASESMMNLLKRFTPHIEKYSIDECFMDVTNDL 121 Query: 112 NCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 + +F I+ + TV VGI+ + LAK+A+ K + + L E Sbjct: 122 RGMESVEFASIIKERIKNELGFTVNVGISTNRLLAKMASELNKPDK-----INTLYKHEI 176 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + K M LPV +++ +G+ + +KL+ + IKT+ +LA D+ ++ F G Sbjct: 177 KDK-MWPLPVGELFMVGKSMKRKLNELHIKTIGELAKYDVNILKAKFKSHGNMVWEYANG 235 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + + + I + +TD + + + + ++LR ++YC IS Sbjct: 236 IDNSDISRYRDEIKCISNETTLSMDLTDTEKIHKILVTLCENLGQRLRDANKYCTSISVN 295 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I+TS F S KL +RDII A + + +W + GV L Sbjct: 296 IRTSDFR------NYSHQKKLKNAVSSTRDIILYADKIFNEMW-GREPIRLLGVQLSGLC 348 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYF 391 S Q+++FD+ +E L +D++ K G + Sbjct: 349 SGSSVQISMFDEKTDT-RNEILDKTLDSIRKKYGDNVIMR 387 >UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WH69_9SYNE Length = 371 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 148/363 (40%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+L GKPV V + G V A + EA+ G+ P Sbjct: 23 IIHIDMDAFYASIEQRDNPELRGKPVAVGGLPSQRGAVCAASYEARKYGIHSAMPSRSAI 82 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 + ++ +E Y +S + + + + VE S+DEA+ D++ + Sbjct: 83 TRCQH--LIFVKPRFEHYRAVSAEIRAIFFDYTELVEPLSLDEAYLDVSVDKQGIGSAVA 140 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++IR + LT G++ K LAK+A+ K + + E + + Sbjct: 141 IAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDG------LSFISPEEAKTFIEQ 194 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L ++D +G+G + K+ ++GI T DL + + F V R R E + Sbjct: 195 LRIEDFYGVGPATATKMKSLGIHTGADLKTWTQAELTQTFGKVGSYYYRVARAEDNRPVN 254 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ I RSF ++ M A+ + A +++L+ + ++ IK + Sbjct: 255 PNR-IRKSIGAERSFFRDLSQIEDMETALANIATEVSQRLQKNKRQGHTLTLKIKYDNYD 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQGVAQ 357 + S L TP + + I+ ATR L + + G+ + + Q Q Sbjct: 314 ------TITRSRTLETPI-EEKQILQIATRLLSLHVERDRPVRLLGITVSNLIAPQPYHQ 366 Query: 358 LNL 360 L L Sbjct: 367 LTL 369 >UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8L3_9ACTN Length = 432 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 165/403 (40%), Gaps = 25/403 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P+ GKPV+V + G V + EA+ GV+ + K Sbjct: 23 IGLMDLDAFFASVEQLDHPEWRGKPVIVGGSPEKRGVVSTCSYEARVYGVRSAMSSAQAK 82 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 L + +++ Y +MS RVM+ L + +P V+ SIDEAF D++ R C + Sbjct: 83 RLCPEA--IWTPGHFDRYREMSARVMAILADETPFVDRVSIDEAFFDISPGRFCDEHPIQ 140 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I V +T +G+ + KT+AK+A+ K + + + ++ Sbjct: 141 IAQRISRRV-SELGITCSIGLGRNKTVAKIASERDKPRG------LTIVTPGTEHGFLAP 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + GIG L +GI+T+ LA+ + F + E R G ++ Sbjct: 194 LPVRAMSGIGAAAESALARVGIRTLGQLAEASDGLLSPIFGINTELVRRRAAGLEVSEVR 253 Query: 239 EFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + I R+F +TD ++ AI + +LR R ++ +K S Sbjct: 254 AIDAPDDVKSISNERTFAHDLTDPSDVKAAIQLLSESVGARLRRRGLAGRTVTLKLKYSF 313 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GV 355 G + KL T D A L +IW G + AGV + DF Sbjct: 314 ------GEGRTIQRKLAHATDDENVFGAVARDLLASIWTEGMHIRLAGVGVSDFGPDPHG 367 Query: 356 AQLNLF----DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 Q +LF + A L +D L + G + F Sbjct: 368 IQTDLFCAVDERGAMASDKRDLAVTLDALRERFGNDAVAFGRS 410 >UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=DPO4_METMJ Length = 360 Score = 308 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 151/365 (41%), Gaps = 21/365 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 + D+++F+AS E P L G+PV+V G V + EA+ GV G P Sbjct: 7 IVLHVDMDSFFASIEVRRDPSLAGRPVIVGADPKGGAGRGVVSTCSYEARRYGVHSGMPI 66 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 + DL V + YA +S +M+ L + R+E SIDEA+ D++ + Sbjct: 67 SRAFDLCPHG--VYLPVDRPFYASVSVEIMALLSRHAGRIEQVSIDEAYLDVSDAGSFPA 124 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 I+ V + T LT VG+A K +AK+A+ K + + + Sbjct: 125 AGALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPDG------LTIVRPDEVAGF 178 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 +++LPV + GIG++ + L GI TV DLA D++ + R RG Sbjct: 179 LASLPVGRIPGIGKKTGEDLRQAGILTVGDLARRDVQEVIARLGRSGVRVHHLARGIDDG 238 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +++ + I +F D P + + A AE LR+++ CR ++ ++ Sbjct: 239 EVQGREGC-KSISRETTFEADTADPPVLAGTLAELADDVAETLRADNLRCRTVTVKVRYR 297 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F ++ S L T D I AA+ L + G + GV L Sbjct: 298 GF------QTHTRSRTLPRFTSDPETIRRAASGLLLP-FLNGEPVRLIGVRLSMLEGGCT 350 Query: 356 AQLNL 360 Q ++ Sbjct: 351 RQASI 355 >UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBQ9_9FIRM Length = 399 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 82/405 (20%), Positives = 164/405 (40%), Gaps = 21/405 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQ 58 D+N+ YAS E P L K + V N G ++A++ EAK +GVK G+ ++ Sbjct: 5 ILHSDMNSCYASIEAKLNPKLKNKAMAVCGDPRNRHGIILAKSQEAKIMGVKTGEAIWQA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLT 117 K ++ +YE Y + S + + RVE + +DE + D++ ++ Sbjct: 65 KIKCP--NLILVPPHYEKYLEFSRKARKIYYSYTNRVEPFGLDECWLDVSESLKLFGSGE 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + +IR + + +TV VG++ K AKL + K L E ++++ Sbjct: 123 EIANQIRERMKKELGITVSVGVSFNKVFAKLGSDLKKPDA------TTLIKKENFKEIVW 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L + + GIG+ +KL+ +GI ++ DLA TD IR + + G + Sbjct: 177 PLDISSIIGIGKATKRKLNGIGIYSLGDLAKTDSDAIRGILGINGLYLWQYANGLDDRPV 236 Query: 238 EEFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++++ + + I S + E + + + +++LR + ++ F++ + Sbjct: 237 KDYSYREVIKTIGNSSTLVEDLYTNEEVYNIFQILSLNVSKRLREANLSSMGVNIFVRDN 296 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 + + PTQ S + A ++ + G+ + + Sbjct: 297 N------LFSYEFQSPINNPTQSSIILSEKAIDLFKKKYKWNFPIRALGIRAINLVDDKI 350 Query: 356 -AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 AQ ++F D E L + + K + L FA ++ Sbjct: 351 PAQTDIFSDYKKIIKKENLDKAIYDIRKKYNKDVLTFASLKNNKK 395 >UniRef50_B1YIX5 DNA-directed DNA polymerase n=2 Tax=Exiguobacterium RepID=B1YIX5_EXIS2 Length = 441 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 103/422 (24%), Positives = 174/422 (41%), Gaps = 28/422 (6%) Query: 2 FALCDVNAFYASCETVFR--PDLWGKPVVVL--SNNDGCVIARNAEAKALGVKMGDPWFK 57 D +FYASCE +R P L K VV + + ++A + K LG+K ++ Sbjct: 12 IFCVDSVSFYASCECRYRNLPPLTTKLAVVSDLTRSGSVILAASPALKQLGIKTASRLYQ 71 Query: 58 QKDLF--RRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVRNC 113 + L R +V Y S V+ L + +P + IYSIDE F D++G Sbjct: 72 IEQLPYRERKQIVLVEPRMLAYMKTSIEVLDVLHQFAPPDAIRIYSIDENFVDMSGTERL 131 Query: 114 -RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHA-AKKWQRQTGGVVDLSNLER 171 T+ +I+ + Q+T + V +GI +AKL K+ G D+S Sbjct: 132 FGSDTETAWKIQTAIWQQTGIPVRIGIGPNNVIAKLVLDLRGKREGIAQCGYADVS---- 187 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 +L+ PV +WG+GR + + L MGI T+ DLA + + + F V+ G Sbjct: 188 --RLLHDFPVRKMWGVGRMMEQHLSVMGIHTIGDLAAAPVEDLHERFGVIGAELWHHAWG 245 Query: 232 EPCLQ--------LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQ 283 TK+ I + Y +R + A+ A ++R +Q Sbjct: 246 IDGSPTIIDPMTLFRTAPDTKRTIGHGVTLMRDYYQYEQIRLVLAELASDVAARVRFSNQ 305 Query: 284 YCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKA 343 + ++ S + + S ++L PT D R ++ + + W G + Sbjct: 306 VGWTVHLGVRYSRHVARDGF---SKQLRLPYPTADERLLLRHILQLFEPNWLDGEPVRFL 362 Query: 344 GVMLGDFFSQ-GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 V LG G QL+LF+DN ++L+ +D +N + G+GT+ A + Sbjct: 363 SVALGQLTPDQGTLQLSLFEDNTKVWRRKRLLKAIDHVNLRYGKGTIRLAVSFLDTSVAK 422 Query: 403 KR 404 +R Sbjct: 423 RR 424 >UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=DPO4_DEHSB Length = 390 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 156/394 (39%), Gaps = 23/394 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+ S E RP+ KPV+V G V A + EA+ G+ G P K Sbjct: 7 MHVDLDAFFVSVEQAVRPEFKDKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLITAKH 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDF 119 L + + N++LY + S + M L + SP +E +DEA+ ++TG + + Sbjct: 67 LCPQA--IFIEGNHQLYREYSEKFMLILSDFSPFLEPMGLDEAYLEVTGFESLHGSIAQM 124 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +IR + + +GIA +K AK+A AK G ++ E + ++ L Sbjct: 125 ASKIRRRITAELGINASIGIANSKVAAKIATEQAKPN-----GQCEVPAGE-EASFLAPL 178 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + + GIG++ + L ++GI T+ LA F++ G + E Sbjct: 179 DIAVMPGIGKKTEQHLKSLGIDTLGKLAALPASFLKSCLGTYAPYLSNAAMGIDNRPV-E 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +F + + + + + LR + R + I+ + F Sbjct: 238 MPSEAKSISRETTFETDTRNQTFLEAKLSYLSEKITATLRKRGKQTRVVQIKIRFADFT- 296 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDFFSQGVAQL 358 + L P +R+I A ++ I + + GV + DF QL Sbjct: 297 -----TLTRQKHLGQPASGNREIFQTALSLMNGILDSDRQAVRLLGVGISDFCGPE-KQL 350 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + + + E+L +D + K G ++ Sbjct: 351 EI---DPAKARLEKLDASLDKIRQKYGFSSVQTG 381 >UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Coriobacteriaceae RepID=C7MN57_CRYCD Length = 454 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 155/421 (36%), Gaps = 43/421 (10%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN--DGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P GKPV+V N G V + EA+ GV P K Sbjct: 29 IMLLDLDAFFASVEQLDHPAWRGKPVIVGGNPEARGVVSTASYEARTYGVHSAMPSSTAK 88 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTD 118 L + Y ++S +VMS +E+ SP +E SIDEAF D+T R Sbjct: 89 RLCPNA--FWTPGRFSRYREISRQVMSIMEDESPALEQVSIDEAFLDITPSRAQTEHPAA 146 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I+ V +T +G+ ++K +AK A+ A K + + + ++ Sbjct: 147 IAQRIQQRVC-ELGITCSIGLGRSKAVAKTASEAHKPRG------LTIVPPGYEETFLAG 199 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP + GIG + L GI T+ +A D + F RG + Sbjct: 200 LPTKAMSGIGPAAQQALRKFGITTLGQVAQADDVILNHVFGKNASLMRDRCRGCDDSPVM 259 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + SF +T + A+ + AA+ ++R +S ++ F+ Sbjct: 260 -HPAGAKSVSNEMSFAVDLTSREDIEAALSTVAAKVGRRMRMNGLVGSTLSLKLRRGDFS 318 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-AQ 357 + +SA L P D I LD +W+ G + G L G Q Sbjct: 319 I------HSAQCHLDIPCDDEYVITPILFDLLDRVWRPGDSVRLVGCALTHIEEVGAPLQ 372 Query: 358 LNLFD-------------DNAPRPGSEQLMT----------VMDTLNAKEGRGTLYFAGQ 394 LFD + + M D++ + G L + + Sbjct: 373 ETLFDVADEAKPDDSSTTEPNTQAAQRARMKREDVRAGLKAATDSVRNRFGETALQYGSE 432 Query: 395 G 395 Sbjct: 433 L 433 >UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42_AGRT5 Length = 357 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 23/367 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P+L G+PV V S G V A + EA+ GV+ P Sbjct: 4 IIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVVAAASYEAREFGVRSAMPSVTAAR 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 ++ +++Y +S ++ + E + +E S+DEA+ D+T ++ T+ Sbjct: 64 RCP--DLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIATEI 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIR + Q T L GI+ K LAK+A+ K + + + + L Sbjct: 122 ASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQA------VITPKNGPAFVEQL 175 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V G+G ++K+ GI+T DL ++F+ +HF RG Q+ Sbjct: 176 AVKKFHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRP 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + +F I D + A + ++ + ++ +K S F Sbjct: 236 DR-IRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFT- 293 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF------SQ 353 + S P ++I+ AA+ L ++ + GV L + Sbjct: 294 -----QATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQEAEDE 348 Query: 354 GVAQLNL 360 QL+L Sbjct: 349 EQPQLDL 355 >UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_HALHL Length = 356 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 82/364 (22%), Positives = 144/364 (39%), Gaps = 19/364 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P L G+PVVV + G V A + EA+A G++ P + Sbjct: 6 IIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAWAR 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 + ++ Y +S ++ + + +E S+DEA+ D+TG + R T Sbjct: 66 RRCPEA--IFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRGSATH 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + IR + + T LT G++ K LAKLA+ K + + E ++A Sbjct: 124 MAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDG------LYVVPPEDGPAYVAA 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 P+ + G+G + +L+ +GI+ V DL D ++ + RG + Sbjct: 178 QPIRRLHGVGPATAARLERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVR 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ I R+FG+ D + Q + + A +L R ++ ++ + F Sbjct: 238 PRRS-RKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYADFE 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + V P + DI L + GV L + Q Sbjct: 297 ------SITRRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQ- 349 Query: 359 NLFD 362 +LF Sbjct: 350 DLFS 353 >UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales RepID=Q2IM85_ANADE Length = 418 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 100/400 (25%), Positives = 160/400 (40%), Gaps = 25/400 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E + P+L G+PV+V N G V A + EA+ GV+ P + + Sbjct: 13 ILHLDLDAFYASVEQLDHPELRGRPVIVGGTGNRGVVCAASYEARRFGVRSALPTARARR 72 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDF 119 L V + Y+++S RV +P VE S+DEAF D+T R D Sbjct: 73 LCP--DGVFLPPRFGRYSELSRRVFDVYRRYTPLVEPLSLDEAFLDVTASRALHGGGPDI 130 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+A V L V G+A K AK+A K + + ++ L Sbjct: 131 ARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDG------LVVVPPGGVAAFLAPL 184 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR-GEPCLQLE 238 PV +WG+G L +G+ T+ DLA + R +R L GE ++ Sbjct: 185 PVGRLWGVGEVTEAALRRIGVATIGDLARMPESALAAALGPTHARGLRALACGEDPREVV 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + +F + + P++ + + + A A +LR+ ++ +K + F Sbjct: 245 PDEEA-KSVGAEDTFDQDLLGRPALERELLAQAGTVARRLRAAGLAGHVVTLKVKYADFT 303 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-Q 357 L + V L T D R I +AA L + + G+ + F Q Sbjct: 304 L------VTRRVTLERATDDDRAIFDAACAQLARV-DLRRPVRLTGISVSGFAGDEERGQ 356 Query: 358 LNLF-----DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 L LF + L +D L + G G + A Sbjct: 357 LGLFGGAPAPPPPEASRRKALNAALDALAGRFGEGAVTRA 396 >UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus RepID=C7RFL5_ANAPD Length = 413 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 158/400 (39%), Gaps = 21/400 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDG---CVIARNAEAKALGVKMGDPWFK 57 + D+NA YAS E P L G P+ V N ++A++ EAK GVK G+ ++ Sbjct: 4 VILHSDMNACYASIEQKLNPKLKGIPMAVAGNPKNRNGIILAKSQEAKEAGVKTGEALWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL- 116 + +Y+ Y S E + +VE + +DE F D+TG + Sbjct: 64 AFAKCP--DLTIVPPHYDEYLKHSKLARKIYYEYTNQVEPFGLDECFLDVTGSAHLFGTG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + +IR + + +TV VG++ K AKL + K V + + ++++ Sbjct: 122 EEIANKIRERMKEEVGITVSVGVSFCKIFAKLGSDMKKPDA------VTIIGEDNFKEIV 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV ++ G+GR +KL+ +GI T+ +LA+TD IR + G Sbjct: 176 WPLPVREMVGVGRATERKLNGIGIFTLGELANTDPDLIRNLLGINGVYLWEYANGLDIRP 235 Query: 237 L--EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + + I S + + + + + + + +++LR + F++ Sbjct: 236 VHDRDHKEPVKTIGNSSTCRKDLVNNREVFNVLQELSFSVSKRLRQAGLEAFGVEIFVRN 295 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ- 353 + + + +Q S + ++ + G+ + Sbjct: 296 NE------LQSYNFQKPIKLASQSSIVLAREGFDLFKEKYKWDFPVRAVGIRAIKLRKEG 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 G +Q+++F D E T + + K G+ + F G Sbjct: 350 GGSQMDVFSDYKKLIKDENCDTALYKIRQKYGKDAISFLG 389 >UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT23_PEDHD Length = 385 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 150/395 (37%), Gaps = 21/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D+++F+ S E L GKPV+V ++ G V + + EA+ GV P + Sbjct: 7 IIHMDLDSFFVSVEIKKNSKLAGKPVIVGGLSDRGVVTSCSYEARKYGVHSAMPSRLARQ 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L N + Y++ S V L++ P +E SIDE + D+TG+ F Sbjct: 67 LCPHAE--FVRGNMDDYSEHSRMVTEILQQKVPVLEKASIDEHYIDMTGMERFYGCMKFA 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 RE++ V + + L V G++ KT++K+A + K +++ ++ L Sbjct: 125 RELKEQVFKESGLPVSFGLSVNKTVSKIATNECKPNGALQVEQLEIP------SFLNPLS 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + + G+G KL MG++ + A + + K ++ G + + Sbjct: 179 IKKIPGLGAATFLKLSEMGVRKIHTFAQIPQQQVYKVLGNNGLSLWQKAHGIDHTPVIPY 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I ++F D+ +RQ I A +LR + + ++ I+ S F Sbjct: 239 REQ-KSISKQQTFESDSIDFTQIRQLITGMVIELAYELRKQQKLTACVTIVIRYSNFETI 297 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + T +I A + + + G+ L + G Q++L Sbjct: 298 TQQCR-------IPYTALDDTLIVKAKELFERAYTRRMLIRLVGIKLSALVN-GYEQIDL 349 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 + L MD + + G + A Sbjct: 350 ---YSASEEKYNLYQAMDKIRNRYGEKAIALASTL 381 >UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_9GAMM Length = 390 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 151/369 (40%), Gaps = 23/369 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN--DGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+A+ E RP+L G PV+V + G V + EA+ G++ + + Sbjct: 31 IIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAARAR 90 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT-D 118 L + + + Y ++S +VM+ L + VE S+DEAF D+T L + Sbjct: 91 SLCPQA--IFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTDGTLAVE 148 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 REI + + T LT G++ K LAKLA+ K + + ER ++ Sbjct: 149 IAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHG------LFVIPPERGLAFLAP 202 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G KKL AMG++TVLDL + + F+ HF R ++ Sbjct: 203 LPVGKLHGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQ 262 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ + R+F + + D M + AA+ A +L+ H + + F Sbjct: 263 P-SRQRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHTVHIKARFPDFT 321 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-----SQ 353 + + + I LD + G+ + S+ Sbjct: 322 ------TVTRAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGITMSGLVNVLAASR 375 Query: 354 GVAQLNLFD 362 Q+NL D Sbjct: 376 VAHQMNLLD 384 >UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=DPO4_XANOM Length = 359 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 147/372 (39%), Gaps = 21/372 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P L GKPVVV V A + EA+ G++ P + + Sbjct: 4 IVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRAER 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDF 119 L + ++ Y +S +V + VE S+DEA+ D+T + L T+ Sbjct: 64 LCP--NAIFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQAKTGMQLATEI 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 + IR + + T LT GIA K LAK+A+ K + + R + L Sbjct: 122 AQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQF------VIAPSRIDAFLLPL 175 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V+ + G+G+ + KL A+GI TV DL + ++ HF + R RG +E Sbjct: 176 KVNRIPGVGKVMDGKLAALGIVTVADLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEP 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 Q + +F E + ++ I A + R + R + +KTS F + Sbjct: 236 DQDV-QSVSSEDTFSEDLA-LDALDTHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRI 293 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDF--FSQGVA 356 + S P + A + RY+ GV L F +G Sbjct: 294 L------TRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSNVEEGAV 347 Query: 357 QLNLFDDNAPRP 368 Q LF + Sbjct: 348 QGQLFGEIPQAE 359 >UniRef50_A8UAY3 ImpB/MucB/SamB family protein n=5 Tax=Bacilli RepID=A8UAY3_9LACT Length = 432 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 85/417 (20%), Positives = 175/417 (41%), Gaps = 20/417 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN----DGCVIARNAEAKA-LGVKMGDPWF 56 DV +FYAS E V R K ++V+ +N G V+A + AK LG++ + Sbjct: 13 IFCIDVKSFYASVECVERGLHPLKALLVVMSNADKPGGIVLAASPMAKKVLGIRNVTRKW 72 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEEL--SPRVEIYSIDEAFCDLTGVRNC- 113 ++ +V Y + + + + IYSIDE+F + G Sbjct: 73 ---EIPYHPDLVIVPPRMSYYIKKNTEINDIFRKYVSDEDLHIYSIDESFISVRGSLKLF 129 Query: 114 --RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 + + R I+ + ++T L V +GI +AKLA K+ + + + + Sbjct: 130 KKKSAYELARMIQYHIFKKTGLYVTIGIGDNMLMAKLALDNGAKYNSEL--IAEWRYEDV 187 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + + + D+WGIG R ++L+++GIKTV DLA + +R ++ E+ G Sbjct: 188 PKTVWKIENMTDMWGIGSRTERRLNSLGIKTVYDLAHANFYQLRDSMGLIGEQLYANAWG 247 Query: 232 EPCLQLEE-FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 + + + P ++ S+ + ++ I A + A ++R H +S Sbjct: 248 IDRSDIRDSYRPLEKSYGNSQILKKDYFKRQEIKIVIREMAEQVATRIRKHHCQTGCVSL 307 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 + S + + + S +K+ + T +++ ++ + ++ ++ G+ Sbjct: 308 SVSYSKYEEKDGF---SRQLKIPS-TSNTKKLVEYCFEIFNKYYEDDKSVRRIGITYSKL 363 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QL+LF++ + +E+L ++D + K G +L A + + R+ L Sbjct: 364 SYTSDIQLDLFENPTEQITNEKLDLLVDKIRDKYGFQSLVHASSLMDGATAINRSSL 420 >UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_CLOD6 Length = 365 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 75/370 (20%), Positives = 145/370 (39%), Gaps = 21/370 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E L G+PV+V N + G V + EA+ G+ P Sbjct: 7 IIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAVAY 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 + V +++Y +S ++ + VE S+DEA+ D+T +N + Sbjct: 67 NRCPYA--VFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYLDVTKNKKNIDSSIE 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++I+ + + LT G++ K LAK+A+ K + + E + + Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNG------LTVITEENAQDFLDK 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV+ +G+G+ S L +GIKT DL ++ + F + RG +E Sbjct: 179 LPVNKFFGVGKVTSNTLKNLGIKTGYDLRCLNLFELENIFKKRGYELYKFARGIDDRPVE 238 Query: 239 EFAPTKQEIICSRSFGERI-TDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 ++ + + + D R + +L++ ++ + ++ IK F Sbjct: 239 PNR-VRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKNSEKFGKTLTLKIKYEDF 297 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGV 355 + S+ L + DI + L + G + + GV + + + Sbjct: 298 TK------ITRSLSLEHYIDEYNDIRSGVDNLLRNVEVNGKQIRLLGVTISNLSDKKETY 351 Query: 356 AQLNLFDDNA 365 + LF+ Sbjct: 352 KDITLFEYMD 361 >UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteria RepID=DPO41_AGRT5 Length = 405 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 167/394 (42%), Gaps = 21/394 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E P+L KPV+V G V A+ GV+ P FK + Sbjct: 23 IAHIDCDAFYASVEKRDNPELADKPVIVGGGKRGVVSTACYIARIHGVRSAMPMFKALEA 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD--LTDF 119 V + E Y+ + + + ++EL+P V+ SIDEAF DL+G Sbjct: 83 CPDA--VVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 + V + ++V G++ K LAK+A+ K + ++A Sbjct: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRG------FSVVGEAEALSFLAAR 194 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G+ + L+A GI+ + L + + + + + V+ +R R RG + Sbjct: 195 PVTTIWGVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHN 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P + + +F I+ + + + S + + A +L+ + + +KT+ F Sbjct: 255 NDPV-KSVSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQTVVLKMKTADFK- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-QL 358 + + +L PTQ + I L+ G +++ G+ + D G+A Sbjct: 313 -----SRTRNRRLDDPTQLADRIFRTGLALLEKETD-GTKFRLIGIGVSDLRDAGLADPP 366 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 +L D A R + + MD L K G+G++ Sbjct: 367 DLVDRQATRRAAAE--AAMDKLRDKFGKGSVETG 398 >UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBK8_9FIRM Length = 389 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 170/403 (42%), Gaps = 23/403 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D+N+F+AS E + L G+PVVV + V + EA+ GV P Sbjct: 5 VIFHIDLNSFFASAEVLKNSALEGQPVVVAGMHRRSVVSTASYEARNYGVHSAMPLHMAL 64 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 + + +V +Y Y ++S R + ++ SP +E SIDE + D+T +R + D Sbjct: 65 EKCPQ--LVVVQGDYAWYEELSRRFFNYVKRFSPYLEPASIDECYIDVTEAIRAYKRPLD 122 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I+ V + L +G+ +K LAK+A+ K G+ L E +RKL Sbjct: 123 LAWRIQKGVYEDLRLPCSIGVGPSKFLAKMASDMRKPM-----GITVLRRQEIERKLW-P 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLAD-TDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L + D++GIG++ L+ GI T+ D A+ + I + ++ RG +L Sbjct: 177 LSIADMFGIGKKTVPLLERQGIYTIGDFANPANEAKIMALMGKHAYQLIQNARGFGSNRL 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + Q I S + I +Y ++ A + +++ + E IS I+ + F Sbjct: 237 DYNTSV-QSISQSTTLDTNIVEYEEVKSVFKRLANKLSQRAKQEDLRGALISISIRYADF 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA- 356 S + T D+ ++ A D G + G+ LG FS+ Sbjct: 296 TNAV------RSTTISEYTNDADVLLEHALLLFDQH-NNGKEIRHLGIGLGSLFSKTRTV 348 Query: 357 -QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 Q+NLF D P ++ LN + G L A + +++ Sbjct: 349 DQINLFQDVKAEPTDS--TDILKQLNKQLSTGKLMKASELLKK 389 >UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidetes RepID=C6W6Q9_DYAFD Length = 416 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 160/400 (40%), Gaps = 26/400 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++ F+ S E L KP++V + G V A + E + GV G P + Sbjct: 12 ILHFDLDTFFVSVERKQDSRLQNKPILVGGTGDRGVVAACSYETRQFGVHSGMPMKMARM 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V+ N E Y+ S V + + P E SIDE + DL+G+ + Sbjct: 72 LCPEATVI--RGNGETYSKHSKEVSEIISQHVPVFEKASIDEFYADLSGMDKYFNCYGMA 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R +++ T L + G+A K ++K+A AK + ++ ++ + Sbjct: 130 SDLRQRIIRETGLPISFGLATNKLVSKVATGEAKPNNQLR------VEPGAEKTFLAPME 183 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + +G ++++ L+ +GI+ V + + + + K F G + F Sbjct: 184 VQKIPMVGDKMNQTLNNLGIRYVKTIQEMPMEMMGKVFGKNGVALWNRANGLDNSPIVPF 243 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ I R+FG+ D MR+ + + A A +LR+ + +S I+ S F Sbjct: 244 HE-RKSISSERTFGKDTGDVRKMREMVRAMAETLAFQLRTGDKLTSCVSVKIRYSDFN-- 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 S +K + T +I R D ++ + GV D + G Q+NL Sbjct: 301 ----TFSKQLK-IAYTSADHVLIPHIERLFDQLYNRRMMVRLVGVSFSDLVT-GNYQINL 354 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKE-----GRGTLYFAGQG 395 FDD R L MD + K G L +A Sbjct: 355 FDDTEERLN---LYQAMDYIKTKYAYNKDGDQILTWASTM 391 >UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_TREDE Length = 395 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 166/396 (41%), Gaps = 21/396 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQK 59 +F D++AF+AS E + P+ GKPV+V + G V + EA+ GV P + + Sbjct: 6 VFFHVDIDAFFASVEQLDNPEYMGKPVIVGGQSERGVVSTCSYEARKFGVHSAMPILQAR 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTD 118 L + + Y + S VMS ++ +P ++ S+DEAF ++TG+ + Sbjct: 66 KLCPSG--IFLRGRMDRYHEKSKEVMSIFKDFTPEIKQISVDEAFLNMTGMEKIFGTPKN 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++ T+ + T LTV VG AQ K +AK+A+ +K G+ + E M + Sbjct: 124 SALLLKKTIKEETGLTVSVGCAQNKYIAKIASGRSKP-----DGLFIVKAGEEI-DFMKS 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQL 237 LP+ DVWG+G + ++L A G+ +V + ++ ++ + +RGE + Sbjct: 178 LPLKDVWGVGGKTRERLIAAGLTSVPQIFNSSEHLLQSILGNASGSFLFQAVRGE-LYDV 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 I R+F + + + + A+ ++ E + +S I+ + F Sbjct: 237 FSDDVKSHSISTERTFEHDLFSHAEIDDVMFYLASELMYRIFDEKVKGKTVSVKIRYNDF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVA 356 + D++D+ A + + G+ + + S A Sbjct: 297 TTVSVQSTGAVV-------NDTQDLFERARELFYKKFDNKTPIRLLGLCIMNIESDIPEA 349 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q LF + ++ M TL KEG+ L A Sbjct: 350 QTELF-YSEKNVKKRKIEETMYTLTKKEGKNILKPA 384 >UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA2_9FIRM Length = 469 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 173/405 (42%), Gaps = 21/405 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+N YA E + P+L +P+ V + G ++A+N AK ++ G+ + Sbjct: 52 IVHSDINHCYAQIEEMLNPELKQRPMAVGGSQEERHGIILAKNLHAKKYKIQTGETLDEA 111 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-T 117 + + ++ +Y Y ++++V + E + RVE Y +DEA+ DLT + + Sbjct: 112 RIKCPQ--LLILPPDYRRYQRITDQVKAIYREYTDRVEEYGLDEAWLDLTQSQRLFGPAS 169 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 R I+ V LT+ +G++ K AK+A+ K G V ++ Q K + Sbjct: 170 QIARTIQQRVYAELGLTISIGLSFNKIFAKMASDFVKP-----SGFVTITRANFQEK-IY 223 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ- 236 L V +++ +G KKL+A GI T+ DLA D +F+R++F V E GE + Sbjct: 224 PLSVRELFYVGAATQKKLEAWGITTIGDLASRDRQFMRRYFGKVGEMLHWFALGEDISEV 283 Query: 237 -LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 L A + + S + + + R + A A +LR + + I+ ++ Sbjct: 284 ALASEAIPVKSVGNSVTAVHDLHTHGEARLVLRVLAESVASRLRDQGLKGKGIALSLR-- 341 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQG 354 + + S K PTQ + +I+ A L WQ + G+ + D Q Sbjct: 342 ----DIHLFRWSLQRKRARPTQLAEEILEDAEILLRQAWQNALPLRSIGISVFDLCLDQT 397 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 QL+LF D R QL +D + + G + + + Sbjct: 398 GEQLDLFVDEQHRQSLLQLEKTVDGIRRRFGFEKIQRCSLLLDKP 442 >UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA41_MICLC Length = 431 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 95/406 (23%), Positives = 160/406 (39%), Gaps = 29/406 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+ S E +PDL G+P V + + V++ + A+A GV+ P + Sbjct: 15 ILHVDMDAFFLSVELREQPDLEGRPAAVAAPSGRSVVLSASYAARAYGVRSAMPLAHARA 74 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDF 119 L +V +LY +S VM+ L +++P +E S+DEAF D+ G R Sbjct: 75 LCP--PLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVAGARRRLGPPEHI 132 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G IR V L VG + K +AK A+ AAK + + +R + L Sbjct: 133 GHLIRERVRSALGLPCTVGGSAVKFVAKTASTAAKPDG------LLIVPPQRTLDFLHPL 186 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G + +++L G+ T+ DLA D + F RG + Sbjct: 187 PVGRLWGVGPKAAERLARRGVATIGDLARVDPARLEASFGAAGREWASLARGIDPRPVAP 246 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +F D + + R A +LR+E ++ +K ++ Sbjct: 247 RPAAR-SIGADHTFDVDPVDVVGVDPEVLRLCHRVAARLRAEQVTAGAVTVRLKAPDGSV 305 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGHRYQKAGV---MLGDFFSQGV 355 S + +L PT D++ A R + + + H + GV LGD Q Sbjct: 306 ------RSRTARLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERLGDEADQPP 359 Query: 356 AQLNLF--------DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 AQ LF + + +D + + + A Sbjct: 360 AQEALFGGPAWGTEGEASEAGDWAGAEAALDAVARRFPTAAVRPAS 405 >UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaproteobacteria RepID=B9JVH1_AGRVS Length = 428 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 165/394 (41%), Gaps = 23/394 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 A D +AFYAS E PDL KP+++ G V A+ GV+ P FK + Sbjct: 46 AHIDCDAFYASVEKRDNPDLIDKPLIIGGGKRGVVSTACYVARIHGVRSAMPMFKALEAC 105 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD---F 119 V N E Y+ + +V + +EEL+P V+ SIDEAF +L G Sbjct: 106 PDA--VVIPPNMEKYSRVGRQVRAMMEELTPLVQPLSIDEAFLELKGTEALHHAPPALVL 163 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R + + +TV VG++ K LAK+A+ K + ++ Sbjct: 164 AR-LARRIESEIGITVSVGLSYCKFLAKVASDLQKPRG------FSVVGEAEALDFLAPR 216 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G+ + L+ GI+T+ L + + + + + +R R +G + Sbjct: 217 PVTTIWGVGKAFASTLEKDGIRTIGQLQTMEESDLIRRYGSMGQRLARLSKGIDDRDVHT 276 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P + + +F + I+ + + + + A +L+ + + +K++ F L Sbjct: 277 NDPA-KSVSAETTFFDDISRREDLVPHLRKLSEKVAWRLKKQELAGHTVILKLKSADFKL 335 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-QL 358 + + +L PTQ + I + L+ G +++ G+ + DF +A Sbjct: 336 ------RTRNRRLDDPTQLADRIFRTGLQMLEKEAD-GTKFRLIGIGISDFADPSLADPP 388 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 +L D +A R + MD L K G+G + Sbjct: 389 DLVDPDAARRAKAE--AAMDQLRMKFGKGMVETG 420 >UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5S0_SPHTD Length = 394 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 163/382 (42%), Gaps = 21/382 (5%) Query: 15 ETVFRPDLWGKPVVVLSNNDGCV--IARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSS 72 E + RP+L GKPV+V G A + EA+A GV+ P + L V Sbjct: 24 EILRRPELRGKPVIVGGRPGGRGVVAAASYEARAYGVRSAMPIAQAVRLCPHG--VFLPG 81 Query: 73 NYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFGREIRATVLQRT 131 ++ Y ++S R + LE SP VE+ S+DEA+ DL+ R+ + R I+ V + Sbjct: 82 DHAYYRELSGRFRAILERFSPLVEMVSVDEAYLDLSHSERSVGPPLEAARAIKRQVREEL 141 Query: 132 HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRI 191 LTV +G+A ++ +AK+A+ K + L + ++ LPV+ + GIG + Sbjct: 142 GLTVSLGVATSRLVAKIASDLDKPDG------LRLIEPGAEAVTLAPLPVERMPGIGPKS 195 Query: 192 SKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSR 251 ++L +G+ T+ LA +R F + + RG + + I R Sbjct: 196 VERLQRIGVTTLGGLARMPAAALRPIFGRRADEVIARARGIDPRPVNPEREPAKSIGRER 255 Query: 252 SFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVK 311 +FG+ +TD + +A+ A R LR E R ++ ++ S F + Sbjct: 256 TFGQDLTDRHEIERALYHLAERTGRDLRREGLQGRVVAVKLRYSDFE------TVGRQRR 309 Query: 312 LLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGS 370 L PT D ++I A + + + + GV + QL +F D Sbjct: 310 LPRPTDDHQEIAEVAMDLVARLLEERQAPVRLLGVRVAGLGPAA-IQLTMFGD--DPLRR 366 Query: 371 EQLMTVMDTLNAKEGRGTLYFA 392 +L +D L A+ G + A Sbjct: 367 HRLNHALDDLAARYHAGLVIPA 388 >UniRef50_D2P394 DNA polymerase V n=7 Tax=Listeria RepID=D2P394_LISMO Length = 426 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 99/415 (23%), Positives = 169/415 (40%), Gaps = 18/415 (4%) Query: 2 FALCDVNAFYASCETVFRP-DLWGKPVVVLSNNDG---CVIARNAEAKA-LGVKMGDPWF 56 DV +F+AS E V R D +VV+SN D V+A + + K +K G F Sbjct: 15 ILCVDVKSFFASVECVKRGLDPLQAFLVVMSNADRAGGLVLAASPQMKKVFRIKTGSRKF 74 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNCR 114 + + R +V +LY ++ + R +YSIDEAF D+T + Sbjct: 75 EVPEDDPR--IVIAPPRMKLYLHVNELIQKIFLRYVSREDFHVYSIDEAFLDVTHSKKLF 132 Query: 115 DLTD-FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR 173 + ++I+A +L+ L V VGI LAKLA A K Q+ G+ + + Sbjct: 133 GSAEVIAKKIQADILKELRLYVTVGIGDNPLLAKLALDNAAKHQK--SGIAEWRYKDVPE 190 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 + PV D WGIG+R + +L+ MGI ++ L+ +++K V+ E+ G Sbjct: 191 TVWKIRPVTDFWGIGKRTAFQLERMGIYSIYGLSQMPPSYLKKRLGVIGEQLYYHSHGID 250 Query: 234 CLQLEE-FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFI 292 +L E + P ++ S+ + D + I A +LR+ H I Sbjct: 251 YSRLSEKYKPIERSYGKSQILEKDYHDPNQIAIIIQEMVEEVAMRLRNHHVDTSVIHLSA 310 Query: 293 KTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS 352 S ++ + K + T S++++ +Q + V Sbjct: 311 GYSRYSTRNGFSH----QKKIMATDSSKELVPYFLEMFWK-YQENDAVRSVAVSCAGIKR 365 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 + QL++F+D +QL +D + + G L A I +KR+ L Sbjct: 366 KTSMQLSVFEDYTKTLQQQQLERTIDKIRDRYGFNALMHANSLIDGATGLKRSAL 420 >UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCD1 Length = 419 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 174/402 (43%), Gaps = 23/402 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+++F+ S E + RP+L G+PV+V + G V++ + EA+ GV P + +L Sbjct: 26 LHLDMDSFFVSVELLSRPELVGRPVIVGGRSGRGVVVSASYEAREFGVHAAMPMGRAMNL 85 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFG 120 V+ ++ LY+ S +V + +++P + S+DEA+ D++ VR Sbjct: 86 CPFAEVI--PPSHGLYSSYSQKVFDLVAQVTPDFQQVSVDEAYIDVSAAVRRLGSPVRIT 143 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++RA + +T L+ VGIA ++ +AKLA+ AK + L L R+ + +P Sbjct: 144 SQLRAEIEAQTGLSASVGIAGSRVVAKLASTRAKPHGQ------LLVPLSATREFLDPMP 197 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++ + G+G + + GI+ + DLA D + + F R G ++ Sbjct: 198 IEALPGVGEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQ 257 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I +F E + D + + A + A ++R++ + + + + F Sbjct: 258 VKDR-SISAEHTFNEDVWDLSQLEHELLRLADKVAHRVRADGKVATTLGLKYRLADFT-- 314 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR-YQKAGVMLGDF--FSQGVAQ 357 S S+ L PT +R+I A ++ + + + + GV FS Q Sbjct: 315 ----TLSRSITLDAPTDLAREIYEALRPAMRNLREQKSKGVRLLGVRAAGLMDFSASGRQ 370 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 + L D+ ++ +D + K G + A ++ Sbjct: 371 VRL-DEAEDSGREAEV--ALDDVRKKFGTAAISQASLLRKRP 409 >UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIK9_HALO1 Length = 409 Score = 301 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 155/398 (38%), Gaps = 24/398 (6%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E P L GKPV+V + G V A + EA+ GV P Sbjct: 9 LHVDLDAFFASVEQRDDPSLRGKPVLVGGSAERGVVAAASYEARRYGVHSAMPMAVALRR 68 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFG 120 + V + YA+ S + L+ SP VE S+DEAF DLTG R D Sbjct: 69 CPQA--VVVRHSMGRYAEASRAFFAILDHFSPLVEPLSLDEAFLDLTGSERLLGDARTVA 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + I+ V L V VG+A TK LAK+A+ K + + +R + LP Sbjct: 127 QTIKDRVRAELSLVVSVGVASTKFLAKIASDIDKPDG------LCVVEPDRVESFLHPLP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +WG+G KL MG++T+ D+A + + + L + E Sbjct: 181 VSRLWGVGAVTQDKLHQMGLRTIGDVARYPSSVLSARLGKSMGAHLSALASGYDPRPVER 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 I +F + + + A R A +LR R + IK + F L Sbjct: 241 PGKPVSIGHEETFEVDLGRKSDIAAVLLGQADRVAARLRRADLRARVVQLKIKYADFRLL 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-----AGHRYQKAGVMLGDFFS-QG 354 + L T D I A L + + + GV L +G Sbjct: 301 ------TRRRSLADATVDGGVIGAVAVAMLGELEVAENRGKAYAVRLCGVSLSGLEDREG 354 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 QL L + + EQL +D ++A+ G G + A Sbjct: 355 PRQLTLGEPRQQQG--EQLGDALDRIHARFGEGVVKRA 390 >UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacter RepID=Q1QAG3_PSYCK Length = 371 Score = 301 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 148/366 (40%), Gaps = 21/366 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+L GKP+VV N G V A + E + GV+ ++ + Sbjct: 22 IIHIDMDAFYASVEQRDFPELRGKPLVVGGDPNGRGVVAAASYEVRKFGVRSAMSCYEAR 81 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTD 118 V+ +++Y +S + + L+P VE S+DEA+ D+TG+ + T Sbjct: 82 KRCPE--VIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLDVTGLSVHQGSATL 139 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +RA +L +T L G++ K LAK+A+ K + +SA Sbjct: 140 MANWLRAQILGQTGLNASAGVSFNKMLAKIASDINKPNG------TAVITPADADAFISA 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++ GIG+ +K+L AMG+ DL T + F + G ++ Sbjct: 194 LPIERFHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFGKRGQFYHDIAHGRDERAVK 253 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 T + + +F E +TD ++ I A A +L + I+ +K S F Sbjct: 254 SER-THKSVGSETTFRENLTDDNELKIQIYEQNADAFSQLHKKQLIAYTITLKVKYSDFT 312 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-- 356 + S L T + + I + + GV S Sbjct: 313 ------QVTRSHTLSTAFDSAESAHFWLDKLFLDIPRT-LPIRLVGVTFSSLTSATQVTP 365 Query: 357 QLNLFD 362 QLNLF+ Sbjct: 366 QLNLFE 371 >UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXH9_9BACL Length = 402 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 155/367 (42%), Gaps = 23/367 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + A D+N FYAS E + P+L GKP+ + G ++ N EA+ LG+K Sbjct: 4 VIAHIDMNCFYASVEEKYNPELKGKPLAIAGEVKTRHGIIVTSNYEARELGIKTTMRVGD 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 + ++ + + Y S + + E + ++EI S+DEA+ DL+ + Sbjct: 64 ARKIYP--NIKILRPDMPKYQQESKLIFDLVREYTDKIEIVSVDEAYIDLSD---FSEPI 118 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 I+ + ++ + VG++ K AK+ ++ K + N + + ++ Sbjct: 119 KVIATIQRRIYKQLGMPSSVGVSFNKFFAKMGSNLKKPLG------FSIINKKNYKDILW 172 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L + ++ G G +KKL +GI T+ D+A + + V R + GE +L Sbjct: 173 NLDIGEMHGCGNASTKKLKKIGINTIGDIAVANEVILHSLLGVQGLRLKNKANGEGNSEL 232 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 ++ ++ I S++F + D + + I + + + +++S IS ++ S F Sbjct: 233 -KYTVDRKSIGNSKTFTNDLIDEDDILKEIKKLSEKVSSRVKSRSYVGNNISIMVRFSDF 291 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-- 355 + S K+ D+ DI N A L + + GV L + Sbjct: 292 K------TITRSKKIPEFICDTNDIFNYAWELLLEHYDFTKGIRLLGVSLNEIKKVKGLK 345 Query: 356 AQLNLFD 362 QL++FD Sbjct: 346 VQLDIFD 352 >UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAM5_9FIRM Length = 425 Score = 300 bits (768), Expect = 8e-80, Method: Composition-based stats. Identities = 100/422 (23%), Positives = 166/422 (39%), Gaps = 30/422 (7%) Query: 1 MFALCDVNAFYASCETVFR-------PDLWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ + S R DL P + + G + A++ AK G+ Sbjct: 5 IIFHVDVNSAFLSWTASDRMAKGIDKVDLRDLPSAIGGDPKTRHGIITAKSIPAKRYGIV 64 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P + ++ +Y LYA S +M L + +P V+ +SIDEAFCD+TG Sbjct: 65 TGEPVSQALRKCPS--LILVPGDYSLYARQSQALMDLLRKYAPAVDPFSIDEAFCDMTGT 122 Query: 111 RNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + D F +++ + + TV VGI+ LAK+A+ K V L Sbjct: 123 ASLYGDPVLFAHKLKDEIRRDLGFTVNVGISSNHLLAKMASDFTKP-----DRVHTLWPR 177 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E RK M LP D+ +G ++KL ++GI T+ DLA T + HF + + Sbjct: 178 EIPRK-MWPLPAADLLFVGESTAQKLKSLGILTIGDLAGTPEDLLVSHFGKHGSQMLAYA 236 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G L + + + D R + S A ++R + R + Sbjct: 237 NGTEPSDLTSRHRKSRGFSNEITISHDLVDREEARLILLSLCETLAARIRLQGDKIRLVG 296 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 + K S F S +L + ++ I A L +W G + GV + Sbjct: 297 VYYKDSSF------VSASRQTRLNRSSSSTQTIYETALSLLHELWD-GRPLRLLGVRGSE 349 Query: 350 FFSQ-GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM--KRAM 406 G Q++LFD +QL +D + K G ++ A + + +R+ Sbjct: 350 IDKDSGSYQMDLFDAG-KNRKLDQLDAAVDQIRDKFGDSSIRRAVFLGADETDLKKRRSN 408 Query: 407 LS 408 S Sbjct: 409 RS 410 >UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FXW7_9SPHI Length = 393 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 78/402 (19%), Positives = 156/402 (38%), Gaps = 21/402 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D++ F+ S E + GKP++V ++ V A + E + GV P L Sbjct: 11 AHLDLDTFFVSVERLKNTQFVGKPLIVGGMSDRAVVSACSYETRLYGVHSAMPMKLALRL 70 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + + + + Y+ S V + E P +E SIDE + DLTGV + F Sbjct: 71 CPQA--IVIRGDMDSYSYYSRMVTDVVREYVPVMEKASIDEFYADLTGVDRFFGCSQFMA 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E++ V + L + +A K ++K+A AK ++ ++ ++ L + Sbjct: 129 ELKQKVRKEVGLPISYALASNKLISKVATEDAKPDGKRE------VEHGLEKDYLAPLRI 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 + + GIG + S L MG++T+ L++ + ++ R+ G + ++ Sbjct: 183 ERMPGIGNKTSGLLHQMGVRTIKVLSEIPVPMMQNLLGKNGVDLSRKANGIDFTPIVPYS 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 + I +F + D ++ + R +LR + I+ ++ S F Sbjct: 243 EQ-KSIGTEETFEQDTIDIYYLKSELIRMTERMTFQLRQHRRLTGCITIKLRYSNFDTVS 301 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 ++ T +++ A ++ + GV QG Q++LF Sbjct: 302 KQM-------VIPYTASDAVLLSKAKELFAKLYDKRLLVRLLGVRFSHLV-QGQYQIDLF 353 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 +D S +L MD + + G + A + + + Sbjct: 354 EDTVE---SVRLYQAMDYIRQRYGDAVVKRAISVPKPPEKER 392 >UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=C1F962_ACIC5 Length = 374 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 19/357 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P+L GKPVVV V A + EA+ GV+ P + Sbjct: 16 IVHVDMDAFYASVEQRDAPELRGKPVVVAWRGRRSVVCAASYEARQFGVRSAMPAVTAER 75 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDF 119 L + + ++ Y +S V E + +E S+DEA+ D+T + T Sbjct: 76 LCPQA--IFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTHNKTGLPTATKV 133 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IR + + LT G+A K LAK+A+ K G+ + + + L Sbjct: 134 AITIRRQIREELSLTASAGVAPNKFLAKIASDWRKP-----DGLFVIQPQD-LATFLPPL 187 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V + G+G+ ++L +GI+T DL D+ + +F R RG + Sbjct: 188 AVGRIPGVGKVTEERLARLGIRTAGDLQHYDLATLESNFGRYGLRLYHLARGVDHSPVTP 247 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 PT + + +F I + I + + R E + R + +KT F + Sbjct: 248 NRPT-KSVSAEDTFEADIP-LSATEPVIRRLSEKVWNASRREARIARTVVLKLKTGDFHI 305 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR-YQKAGVMLGDFFSQGV 355 ++ S+ TP ++ A + + R Y+ GV L +F Sbjct: 306 ------HTRSLTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSNFRDPEP 356 >UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RF31_9FIRM Length = 413 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 88/418 (21%), Positives = 169/418 (40%), Gaps = 26/418 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+N YA E + P L + V + G ++A+N +AK GVK G+ Sbjct: 4 VILHSDINHCYAQIEEMKFPQLREVCMAVGGSERSRHGIILAKNDKAKECGVKTGESL-- 61 Query: 58 QKDLFRRCG-VVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRD 115 ++ F +C + NYE Y S +V + S +VE + +DEA+ D++ + Sbjct: 62 -REAFVKCPQLCIIPPNYEEYVYYSEKVKEIYQAYSDKVESFGLDEAWIDVSESTKLFGS 120 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 + EI+ V L+V +GI+ K AK+ + K G+V+++ R + Sbjct: 121 GYEIATEIQKRVKDELGLSVSIGISYNKVFAKMGSDMKK-----NMGLVEITRT-NFRDM 174 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + LP++ ++ +G+ +KKL I T+ +LA ++++HF + E G+ Sbjct: 175 LWPLPIEHLFYVGKATAKKLRQYSIVTIGELAQLPRVWLKEHFGKMGELVWWFANGQDIS 234 Query: 236 QL--EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 ++ + I + + + + A A +LR + IS ++ Sbjct: 235 EVAFHNQKEEVKSIGNGITTPRDLCTFEEAKIVFYVLAESVASRLREQGLQGNVISISLR 294 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FS 352 N+ + K+ T + +I+ L + + V + + Sbjct: 295 ------NKYLESITRQCKIDKATNLASEIMEHILLLLKENYDFHIPLRSVAVSISGIQYM 348 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ---QWQMKRAML 407 + QLNLF D ++L V+D + K G + I Q +Q +R + Sbjct: 349 ECYRQLNLFVDEKNYQKQQRLEQVVDDIRKKYGFKKIQRCCMLIDQGLSDFQPQRDHV 406 >UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW5_9BACT Length = 387 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 18/361 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+A+ E P+L GKPV V G V + EA+ GV + K Sbjct: 21 IIHIDMDAFFAAVEQRDNPELRGKPVAVGFDGPRGVVSTASYEARKYGVHSAQSIAQAKQ 80 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 ++ ++ YA +S+++ +E + +E SIDEAF D+T + D Sbjct: 81 RCP--NLIIVPCRHDYYAKISHQIHQIFQEYTDLIEPISIDEAFLDVTQNKKGIELAVDI 138 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +EI+ + + T LT GI+ K LAK+A+ K G+ + ++ ++ L Sbjct: 139 AKEIKTRIKEATGLTASAGISYCKFLAKVASDYRKP-----DGICTIHP-DKAYDFIAQL 192 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P++D WG+G++ +K+ MGI DL + + F RG + Sbjct: 193 PIEDFWGVGKKTLQKMHFMGIFNGADLRKVSEEHLVEVFGKAGHIFYDFARGIDERPVIT 252 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + ++ + C ++F E I ++ + E++ R ++ +K + F Sbjct: 253 YRE-RKSVGCEQTFLEDIYLKTAVIIELYHTVLELLERIAKSGFEGRTLTLKVKFADFTQ 311 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI-WQAGHRYQKAGVMLGDFFSQGVAQL 358 +K DI+ A R L + + + H + G+ + + S+ + Sbjct: 312 ITRSISQEKVLKKKD------DILPLAKRLLKQVDYSSAHPIRLLGLSVSNASSEEARKQ 365 Query: 359 N 359 + Sbjct: 366 D 366 >UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XRF0_9BACT Length = 1420 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 160/414 (38%), Gaps = 30/414 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D +AF+AS E L GK + V G + + + EA+ GV P + + L Sbjct: 13 IVHLDADAFFASVEQAADARLRGKAMAVGGEKRGIIASASYEARKFGVYTPMPTVRARKL 72 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + ++ ++E Y S + S + +P VEI SIDE + DLTG R + + Sbjct: 73 CPK--LIIVPGDFEKYERFSRWMFSYAYDFTPEVEISSIDEGYFDLTGAR--KSPLEIAE 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKK---WQRQTGGVVDLSNLERQRKLMSA 178 IR + +TV GIA K ++++A+ K Q GG + + Sbjct: 129 IIRGAIRGALKITVSEGIACNKLVSQIASKLNKPAAFKQVPLGGEI---------PFLHP 179 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP + G+G + KL+A G+ + +A T + ++ + G L Sbjct: 180 LPNKWLPGVGPTTATKLNAAGLIRIGHIAKTPLDLLQLLMGNMARSLKEFADGIDERPLI 239 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + + +FG TD + + A ++R++ + R ++ ++ + A Sbjct: 240 QESEPAKSYGHQETFGVDQTDEEFIEATLKRMADSLMAQVRADDKTIRTLTVKVRYNDMA 299 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-Q 357 ++ LL PT DI + W+ + + L + +S + Sbjct: 300 EDQAGES------LLEPTDLETDIYGRIRVLMKQAWRRRVSLRMVSLRLSNVYSGIFRAE 353 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 L L +L + +D L G+ + +Q++ A SP Y Sbjct: 354 LALERSAEQHEAKRRLASAVDQLRQSRGKQVILRG-----HDFQLREA--SPDY 400 >UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae RepID=DPO4_STAHJ Length = 358 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 80/364 (21%), Positives = 141/364 (38%), Gaps = 18/364 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ F+A E P L GKPV+V + G V + EA+ GV P + Sbjct: 6 IIHIDMDYFFAQVEMRDNPTLKGKPVIVGGKASTRGVVSTASYEARKYGVHSAMPMSQAH 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 L + ++ Y + S +MS + + VE S+DEA+ D+T VR + Sbjct: 66 KLCP--NGYYVRARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDITHLVRPDLSASK 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 IR + ++T LT G++ K LAKLA+ K + + + ++ Sbjct: 124 IATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMK------VIDYNNVNDILMN 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + D G+G+ K + I T DL D + + F + RG +++ Sbjct: 178 LDIGDFPGVGKASKKVMHNHDIYTGKDLYDKTEFELIRWFGKRGRGLYLKARGIDHSEVK 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + R+F + D + Q I + + AE+L + ++ +KT Sbjct: 238 ATR-VRKSVGTERTFSTDVNDDEEILQKIWELSGKTAERLSKLQKSGSTVTVKLKTYQ-- 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 Y S L DI N A + + + GV +G+ + Sbjct: 295 ----YETFSKQRSLREAVSRDIDIYNVAYDLYNDLKDPDVPIRLIGVTVGNLEQSRYENM 350 Query: 359 NLFD 362 ++D Sbjct: 351 TIYD 354 >UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM9_9FIRM Length = 409 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 172/403 (42%), Gaps = 22/403 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D+NAF+AS E + P L GKPVVV V + EA+ GV P + Sbjct: 16 VIYHIDLNAFFASAEILLDPSLEGKPVVVSGLTKRSVVSTASYEARQFGVHSAMPINEAL 75 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + +V ++ Y +S + +S +++ + RVE SIDE + D++ + D Sbjct: 76 KLCPQ--LVVVKGHHGYYEQLSEQFISYVKKYTDRVEQASIDECYADMSQAIHRFPRPLD 133 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +++ +L HL +G+A K LAK+A+ K G+ L E KL Sbjct: 134 LAWQLQQELLTDLHLKCSIGVAPNKFLAKMASDMKKPM-----GITVLRKQEVPVKLW-P 187 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++D+ GIG++ + ++ A+GIKT+ DLA D +R ++ GE ++ Sbjct: 188 LPIEDMRGIGKKTAPQMKALGIKTIGDLAAADPEQLRPLLGKNTMTYIQRANGEDDREII 247 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 A + + S + + +R A + +E++ E + +S I+ F Sbjct: 248 SDAEI-KSMSQSTTLNYDFSTEEEVRTLFRKLANKLSERMIEEDKMGTIVSISIRYFDFN 306 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQGVA 356 N S KL P S D+ A D ++ + G+ +G Sbjct: 307 ------TNVRSRKLDHPVYRSEDLFELAMELFDENYE-DQPMRHLGIGVGSLSSIHDQKI 359 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGR-GTLYFAGQGIQQ 398 Q+NLF+ P L ++ LN + G L A I++ Sbjct: 360 QMNLFEAPPVDPACATLD-LISQLNQQLTLGGKLTTAAALIKK 401 >UniRef50_UPI0000F2F527 DNA-directed DNA polymerase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2F527 Length = 375 Score = 298 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 12/379 (3%) Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELS--PRVEIYSIDEAFCDLT 108 MG+P F+ DL R V+ SSNY +Y +MS R L E EIYS+DEAF +LT Sbjct: 1 MGEPLFQILDLVMRNDVIVLSSNYIIYGEMSRRFHKILAEYVSPENHEIYSVDEAFLELT 60 Query: 109 GVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSN 168 R +L ++I+ +L+ L V VGI ++KT AK+ N+ AK + G Sbjct: 61 SYRGIYNLNQCAQDIKEKLLKLLSLPVCVGIGRSKTEAKIMNYIAKTYPHLNGICNVFDL 120 Query: 169 LERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE 228 E + + V +VWG+G + KKL M I TV DL I+ F+VVL+RTV E Sbjct: 121 AEVKDSIFRNTDVGEVWGVGSQQKKKLRLMNINTVYDLMTASPSHIQSVFSVVLKRTVLE 180 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 L G C+ +E PTK++I+ SR+FG+RITD +++A+ A + R+E I Sbjct: 181 LNGISCIDIEHTPPTKKQIVSSRTFGQRITDIHDLKEAVIKRTQEAFTRARNEQVLVGCI 240 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 F ++PF +P+Y S PT D R ++ ATR +D ++++G ++KAGV+L Sbjct: 241 IVFAYSNPFDKTKPFYKKEQSSSFAVPTDDLRLLVQTATRLMDQVYKSGIEFKKAGVILT 300 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAML 407 + +L D+ +EQLM ++ + G+ + F G + + W L Sbjct: 301 CLEPKHTYTYDLLTDHQDLEKTEQLMKAIEEVQQIFGKNKIGFGGSMFKNRIW-----NL 355 Query: 408 SPRYTTR----SSDLLRVK 422 + Y TR ++++K Sbjct: 356 TANYQTRNYFSFDGMIKIK 374 >UniRef50_Q03X78 Nucleotidyltransferase/DNA polymerase for DNA repair n=19 Tax=Lactobacillales RepID=Q03X78_LEUMM Length = 440 Score = 298 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 102/418 (24%), Positives = 163/418 (38%), Gaps = 17/418 (4%) Query: 1 MFALCDVNAFYASCETVFRPD--LWGKPVVV---LSNNDGCVIARNAEAKA-LGVKMGDP 54 +F L D +FYAS E V R L G VV+ + N G V+A + AK LG+ Sbjct: 18 VFFLIDSKSFYASVENVERGFNPLKGDLVVMSEQANTNGGLVLAASPTAKKDLGISNVM- 76 Query: 55 WFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVE--IYSIDEAFCDLTGVRN 112 +Q+DL G+ Y + ++ + + + + YSIDE+ D+T Sbjct: 77 --RQRDLPDVHGLFIAHPRMNNYIAENLKINNIYRQYTDDINLLPYSIDESILDVTHSWR 134 Query: 113 C--RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 + + +I+ V T + + VGI T LAK+A K R GV + Sbjct: 135 LFGKTPEEVAFKIQKQVRAETGVYLTVGIGDTPVLAKIALDIEAKHTRNLMGV--WHYED 192 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 KL +DDVW IG R + KL+ MGI ++ DLA D R +V E+ Sbjct: 193 VPTKLWPITKLDDVWSIGSRTAHKLEVMGIHSMYDLAHQDPYQYRAKMGLVGEQLFALSW 252 Query: 231 GEPCLQLEEFA-PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G + E P + S+ + + A + A ++RS + +S Sbjct: 253 GIDRTDMAEVVVPKSKSYSNSQVLPRDYKRKEEIEIVVREMADQVATRIRSHKKQTCLVS 312 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 FI S + + PT D+R ++ + W G + G+ G Sbjct: 313 LFIGYSFAESERQGSHGFRKQQRIDPTNDTRKLMAIMVALFERHWH-GEVIRNIGIDYGG 371 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QL+LF+ ++ V+D + + G L A + + RA L Sbjct: 372 LIEDTGVQLDLFEQPEKSIKFNKIDQVVDEIRKRFGTTALMRAMSKEKGGTAINRASL 429 >UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAH2_9FIRM Length = 402 Score = 298 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 159/404 (39%), Gaps = 28/404 (6%) Query: 1 MFALCDVNAFYASCETV-------FRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ Y S E V DL P ++ + G V+A + AK G++ Sbjct: 7 VIFHIDVNSAYLSWEAVYGISVRKDEVDLREVPSIIGGDESKRRGIVLAASIPAKKKGIR 66 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG- 109 + + + ++ + +Y S + + SP +E +SIDEAF D+T Sbjct: 67 TAETVREALNKCP--DLIIRPPCHGMYDKFSKAFLKEALKFSPVLEKFSIDEAFLDMTET 124 Query: 110 VRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 V + + ++ + ++ TV +G+A K LAK+A+ K + V L Sbjct: 125 VGQYKSPYEAACLLKDRIYEKLGFTVNIGVAPNKLLAKMASDFEKPNK-----VHTLFRE 179 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRE 228 E K M LPV+++ +G KKL +GI+T+ +LA + ++ H + Sbjct: 180 EVPNK-MWPLPVENLLFVGPATKKKLHNLGIRTIGELAHINPELLKSHIGNKHGIQIYEY 238 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G +E + S + I + S A A +LR++ I Sbjct: 239 ANGIDRAPVEAQQADSKGYGNSITLPSDIDSLEEADTVVLSLAETVASRLRADRVKASCI 298 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + IK F +S KL PT + +I+ AA ++ G + GV Sbjct: 299 TVEIKDCQFR------RSSHQKKLFAPTDITNEIVQAAKELYREKFR-GTSVRLIGVRAS 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 D + AQ++ D + L +D + K G+ + A Sbjct: 352 DITKEEFAQMDFLSD-KKKEKLRMLDQSIDAIRIKYGKDAVQRA 394 >UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_LEPIC Length = 364 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 156/370 (42%), Gaps = 26/370 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+ GKP++V N+ V A + EA+ GV+ P K Sbjct: 8 IIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCSKAA 67 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + + +E+Y ++S ++ E + VE+ S+DE + D+T +N Sbjct: 68 QLAPQA--IFVFPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVTFNKKNIPFAVT 125 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +EIR + +RT LT G+ +K ++KLA+ K + + + + Sbjct: 126 IAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNG------LTVVLPDDVISFIDP 179 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV G+G+ ++K+ +GI T DL I + +HF + + RGE + Sbjct: 180 LPVSSFHGVGKVTARKMKELGIYTGKDLRTKSIDELVQHFGKMGIYYYKISRGEDER-MV 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + ++ + +F DY + + + A +L + + ++ IK F+ Sbjct: 239 QSSRERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLEKKDFAGKTLTLKIKFYDFS 298 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-------RYQKAGVMLGDFF 351 L + S L P + ++ + A + ++ + + G+ L Sbjct: 299 LK------TRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIKAIRLLGISLSHPN 352 Query: 352 SQGVAQLNLF 361 S+ NLF Sbjct: 353 SENED-PNLF 361 >UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 Length = 353 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 146/355 (41%), Gaps = 21/355 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-----NNDGCVIARNAEAKALGVKMGDPWF 56 D++AF+A+ E P L GKPV++ S G V + EA+A GV Sbjct: 14 IIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYEARAFGVHSAMSSK 73 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRD 115 + + + V S NYE Y + ++ + + + +E SIDEA+ D+T + + Sbjct: 74 EAYERCPQA--VFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYLDVTENKLGIKS 131 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 R I+ + Q HLT GI+ K LAK+A+ K + + E+ Sbjct: 132 AVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHG------LTVILPEQAEDF 185 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + + + G+G++ ++L MG+ T DL + + F + R+ RG Sbjct: 186 LKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKARGIHNS 245 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ ++ I +++G+ + +++ + + + A L + + + + I+ Sbjct: 246 PVKSNR-IRKSIGKEKTYGKILRAEEDIKKELTLLSEKVALNLHQQEKAGKIVILKIRYE 304 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 F+ + TQD+ I A + + + + + G+ + F Sbjct: 305 DFSTLTKRKSIAQK------TQDASQISQIALQLYEELSEKERGVRLLGITMTGF 353 >UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Rothia mucilaginosa RepID=D2NU69_9MICC Length = 479 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 25/382 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AF+ + E + P L G+P++V V + + EA+A GV+ G P + + Sbjct: 27 VIMHLDMDAFFVNVELLENPALRGEPIIVAPLGPRSVVCSASYEARAHGVRSGMPLSRAR 86 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 +L V+ +Y Y S VM+ L +LSP VE S+DEAF DLTG + +D Sbjct: 87 NLSPNATVLPLRGDYRHY---SRAVMAILNDLSPYVEQVSVDEAFVDLTGAYLHGQDPVA 143 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + R + Q L G+A K LAK+A+ +K + + ER ++ + Sbjct: 144 LAQSARDRIAQELSLPSSAGVAPNKLLAKMASTGSKPNG------LWVIPPERVQEFLDP 197 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQL 237 V ++WG+G + +++L GI T+ + + ++++ F E RG + Sbjct: 198 RKVSNLWGVGVKSTEQLSRYGIHTIAQMRSMSLDWLKERFGTAQGEHLWAMARGIDERPV 257 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + +F TD + AI + + ++LR+ + +S I+ S F Sbjct: 258 VTEREE-KSMGGEHTFETDTTDAQEVSAAIRELSLKLGKRLRAAGKLAGGLSLKIRYSTF 316 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA-----IWQAGHRYQKAGVMLGDFFS 352 ++ ++ L P I + A +L A A + GV Sbjct: 317 E------THTRAIALNVPVDSGMQIASLALEALRADEILVGQAAPRALRLIGVRAEKLAH 370 Query: 353 -QGVAQLNLFDDNAPRPGSEQL 373 + Q LFD S + Sbjct: 371 AEDGVQQTLFDSIESGANSRSI 392 >UniRef50_C2HDM1 Possible DNA-directed DNA polymerase n=83 Tax=Firmicutes RepID=C2HDM1_ENTFC Length = 471 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 91/424 (21%), Positives = 167/424 (39%), Gaps = 24/424 (5%) Query: 2 FALCDVNAFYASCETVF-RPDLWGKPVVVLS--------NNDGCVIARNAEAKA-LGVKM 51 D +FYAS E V D +VV+S G ++A + AK G+ Sbjct: 30 ILCIDCKSFYASVECVEKDLDPLTTKLVVMSYPSDSTETRGSGLILASSPAAKKAYGITN 89 Query: 52 GDPWFKQKDLFRR--CGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDL 107 + +DL + + Y + + + + ++ + +YS+DE+F D+ Sbjct: 90 ---ISRARDLPFPYPSDLYIVAPRMAYYMEKNREINTIYKKYADEANHHVYSVDESFLDV 146 Query: 108 TGVRNCR---DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV 164 T + D + I V ++T + +GI LAKLA K +Q + Sbjct: 147 TNSMALFGKTNAYDMAKLIHKDVFEQTGIYTTIGIGDNPLLAKLALDNGSKDGKQM--IA 204 Query: 165 DLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLER 224 + + KL + + D WGIG+R +K+L MGI +V DLA D ++ ++ + Sbjct: 205 EWRYEDVPEKLWTISDITDFWGIGKRTAKRLKQMGIHSVYDLAHADYYHLKSTLGIIGTQ 264 Query: 225 TVRELRGEPCLQL-EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQ 283 G L +E+ P + I S+ T + I A + +LR Sbjct: 265 LYAHAWGIDRSFLGQEYIPKSRSIGNSQILDRDYTRQEEIEIVIKEMADQVGTRLRRSAA 324 Query: 284 YCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKA 343 + +S ++ S L+ + T SR++ +A ++ ++ Sbjct: 325 KAQVVSLWVGYSLGYLDPNGKTGFHQQTKIEATNASRNLADALLTIFHQHYR-CQDIRRI 383 Query: 344 GVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 GV + QLNLF++ + ++ V+DT+ K G ++ A +Q + Sbjct: 384 GVNCSNLVYATGLQLNLFENPEKQINEAKVDFVVDTIRKKYGFKSIIHAHSLLQGGRAIA 443 Query: 404 RAML 407 R+ L Sbjct: 444 RSSL 447 >UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=Q2S2C0_SALRD Length = 373 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 18/368 (4%) Query: 2 FALCDVNAFYASCETVFRPD-LWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYA E PD GKP+ V + G V + EA+ GV P + Sbjct: 21 IVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGDPPRGVVQTASYEARPYGVHSAQPAVEAD 80 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 ++ S ++Y + S R+ L + VE S+DEA+ D+T + R T Sbjct: 81 RKCP--DLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRPSGTL 138 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 R +RA + + T LT G+ K +AK+A+ K + + + Q + ++ Sbjct: 139 IARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDG------LTVVRPDEQMEFIAQ 192 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++ GIG + K+ +GI+T DL +T R + HF G ++ Sbjct: 193 LPIEKFHGIGPVTAAKMQELGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQ 252 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + R+F E I +M + A R A++LR ++ R ++ +K+ Sbjct: 253 PDR-DRKSVGAERTFPEDIARAETMLDRLSPIAERVAQRLRQANRKGRTVTLKLKSHDHQ 311 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 ++ + + P + ++ R L + G+ + + A Sbjct: 312 VS------TRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLTDEERAGG 365 Query: 359 NLFDDNAP 366 L D P Sbjct: 366 QLEFDFRP 373 >UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42_RHILO Length = 415 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 91/412 (22%), Positives = 169/412 (41%), Gaps = 32/412 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E + P L GKP+ V V+A + EA+A GV+ G P K ++L Sbjct: 7 ILHADLDAFYASVEQLLDPSLRGKPIAVGGG---VVLAASYEARAFGVRGGMPGRKAREL 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDFG 120 + ++ N+ Y + + + L++ +P VE SIDEAF D+ G + D Sbjct: 64 CPQ--LIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTHLFGQPRDIA 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR V L + +G+A+TK LAK+A+ AK + + + + + LP Sbjct: 122 TAIRHRVRAELGLPISIGVARTKHLAKIASQVAKPDG------LVVVDPGTELDFLHDLP 175 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEE 239 V +WG+G +L +GI+T+ +LA T + + E+ +LE Sbjct: 176 VSLMWGVGPATKSRLAEIGIQTIGELARTHSGALTRLLGPAAGEKLAALAWNRDPRKLET 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + G++ + + A R A +LR++ + R ++ ++ + + Sbjct: 236 RRRA-HSAGAQSALGQKPAVARVIVPTLLHLADRVASRLRAKARPGRTVTVRVRFADLSA 294 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR---YQKAGVMLGDFFSQGVA 356 + S+ L P + + A + + R + + Sbjct: 295 ------VTRSITLDQPISATTMLAEIAGDLVRGVLADHPREKTISLLAISVSHLEESAEL 348 Query: 357 QLNL---FDDNAPRPGSEQ------LMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 QL+L D RPGS++ +D + + G+ + + ++ Sbjct: 349 QLDLPLGLADEKRRPGSKKGLARFGADRAIDKIRERFGKQAVGYGTVALEAA 400 >UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM9_ERYRH Length = 392 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 20/386 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND-GCVIARNAEAKALGVKMGDPWFKQK 59 + D+NAFYAS + L+GKPVVV SN V + EA++ GV P K Sbjct: 4 VIFHIDINAFYASAHLITDSSLYGKPVVVCSNQRGSVVTTASYEARSFGVNSAMPLAHAK 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTD 118 L V+ +++LY ++S + M+ + S ++ SIDE + D+T V + D Sbjct: 64 RLCPNLEVIEV--DFDLYQELSVKFMNIIRSYSAVMQPASIDECYVDMTEVIKKYEKPLD 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 EI+ + + L + +G+A K LAK+A+ K G+ L E +KL Sbjct: 122 LAVEIQKNIWEALRLPISIGVAPNKFLAKMASDMQKPR-----GITVLRIREVSQKLW-P 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L ++ ++GIG++ KL +GI+T+ DLA + ++ V + V++ G ++ Sbjct: 176 LSIESMYGIGQKTVPKLKQIGIETIGDLARFNPDHLKSILGVNAQNFVQKANGYDHSVID 235 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 T + I S++F + +TD +R AI + ++ + + +S I+ + Sbjct: 236 T-DVTMKSIGQSKTFKDAMTDLDEIRNAILNELVEVKRRMERQDVVGKTVSFSIRLDDYK 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG--VA 356 + S T+D + D ++ V + + + + Sbjct: 295 ------TATRSFTFDEYTRDQNLVFERLMSLYDE-FEGEGGVSFISVTMTNLLPKDEIIE 347 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNA 382 QLN+FDD ++ + + LN Sbjct: 348 QLNIFDDLDEITVNDIIQRLNKELNQ 373 >UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria RepID=A3VP13_9PROT Length = 422 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 156/395 (39%), Gaps = 23/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AF+A+ E P L KPV+V + G V A++ G+ P FK K L Sbjct: 35 IAHVDCDAFFAAIEKRDDPSLVDKPVLVGGGHRGVVSTCCYIARSYGIHSAMPMFKAKAL 94 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD--LTDF 119 + V Y + + ++ + L+P ++ SIDEA+ DL G Sbjct: 95 CPQA--VIVPPRGAAYREAAAQIRDLMAPLTPLIQPVSIDEAYLDLGGTERLHGAIPAQL 152 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 ++ V + +T+ +G++ K LAK+A+ K G + +N ++ Sbjct: 153 LAKLAKDVETQIGITLSIGLSVNKLLAKIASDFDKPRGFTLIGGTEAAN------FLAPY 206 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P + GIG R S+KL G +T+ DL R + + GE + Sbjct: 207 PPGLLPGIGTRFSEKLMRDGFRTLGDLQHCSTRELVDRYGEHGLTLRARACGEDPRPV-T 265 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + +F I D ++ + + A + + + + + R ++ +KT+ F Sbjct: 266 VDRETKSVSGETTFRADIGDAAALEDHLYAMARKVSSRAKEKGLAGRVVTLKLKTARFR- 324 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH---RYQKAGVMLGDFFSQGV- 355 + L + +R I + A L A Q G Y+ G + D V Sbjct: 325 -----TFTRRQTLPHASNLTRVIFDCARAMLTAELQKGRTPVTYRLIGAGISDLVPAEVM 379 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLY 390 LF ++ + G + +D LNA+ G ++ Sbjct: 380 HDGYLFAEDLEKTGRRE--DAIDKLNARFGEDSIG 412 >UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damage-inducible protein P n=12 Tax=Acinetobacter RepID=B0VP90_ACIBS Length = 363 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 145/347 (41%), Gaps = 19/347 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E RPDL PVV+ S++ + A + A+ G++ + + Sbjct: 4 IIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQARK 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L + VV N+E Y +S ++ S ++ + +E S+DEA+ D+T ++ T+ Sbjct: 64 LCPQ--VVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIASATEV 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IR + ++T LT G+A K LAK+A+ K + + + + L Sbjct: 122 AMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNG------LFVIKPSQVASFIQDL 175 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G+ +KL + + T+ DL + + HF ++ +G ++ Sbjct: 176 PLKKIPGVGKVTQEKLQQLELHTLGDLQKIEEAVLVHHFGKYGQQLYLYAQGIDNRPVQA 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +Q+I +F T + A + + L + R ++ +K F Sbjct: 236 ER-ARQQISKETTFDSDFT-LAQCQSYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQT 293 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA-GHRYQKAGV 345 + S P +D+I L+ + +++ GV Sbjct: 294 LQ------HSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334 >UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=DPO4_NEIMF Length = 352 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 152/363 (41%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E +P L G+PVVV + A + EA+ G+ K Sbjct: 6 IIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKR 65 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L + V +++LY +S ++ + + +E S+DEA+ D+T +N ++ Sbjct: 66 LCPQA--VYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASEV 123 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +EIRA + T LT GIA K LAK+A+ K + + + + L Sbjct: 124 AKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQF------VLPPHKVMAFLETL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G+ KK+ ++G++T DL + + HF R +RG ++ Sbjct: 178 PLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKA 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + +I + E + + A ++ ++ + ++ +KT F + Sbjct: 238 ERE-RLQISTEITLPEDLP-LEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI-WQAGHRYQKAGVMLGDFFSQGVAQL 358 + + + P D ++ AA + + Q ++ G+ +G + Q Sbjct: 296 ----ITRTLTYSSVLP--DCAALLQAAQMLIARVPPQTEDAFRLIGIGVGHLVPKNQQQ- 348 Query: 359 NLF 361 +L+ Sbjct: 349 DLW 351 >UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5X9_METB6 Length = 365 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 150/369 (40%), Gaps = 21/369 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 + D++ FYA+ E P++ GK VVV G V + EA+A GV+ P Sbjct: 12 IVLHADMDCFYAAVEMHDHPEIAGKAVVVGADPQGGAGRGVVSTASYEARAFGVRSAMPI 71 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 + L G V + YA +S +M +E RV+ SIDEAF D++ VR+ Sbjct: 72 SQAYRLCP--GAVYLRPDMARYAAVSAEIMGIFKETGYRVQQVSIDEAFLDISPVRSFDT 129 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 D ++ T+ R +T +G+A +K +AK+A+ K + + R Sbjct: 130 ARDLAVRLKQTIRDRVGITCSLGVAPSKIVAKIASGHQKPDGM------TVVTPDSARDF 183 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 ++ LP+ + GIG + +++A+GI T+ +LA DI+ + F G Sbjct: 184 LAPLPIRKIPGIGGKTGAQIEALGITTIGNLATCDIQVLVGAFGRSAGLLREAALGHDNS 243 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ E + I +F D + + A+ + E + ++ ++ + Sbjct: 244 EVVERDGV-KSISKETTFANDTEDPKEIAATMELLVREVAQAIADEALQFKTVTIRVRYA 302 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F + + LL D I AA L +W G ++ G+ L Q Sbjct: 303 GF------VSKTKARSLLHYHNDEAAIRAAAGELLRELWD-GKPIRRLGLRLSTLRHQDS 355 Query: 356 AQLNLFDDN 364 Q LF Sbjct: 356 RQQTLFGSC 364 >UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms RepID=DPO4_ACTPJ Length = 356 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 142/371 (38%), Gaps = 31/371 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P L GKPV V + G + N EA+ G+ P + Sbjct: 7 IIHIDMDCFYAAIEMRENPALIGKPVAVGGSVEGRGVLTTCNYEARKFGLHSAMPTAQAL 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 ++ N LY +S ++ + VE S+DEA+ D+T R C T Sbjct: 67 KRCP--NLILVPVNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVTDCRQCSGSATW 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +EIR + HLT GIA K LAK+ + K + + + E + Sbjct: 125 IAQEIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQF------VISPENMTAFIYD 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ + G+G+ ++KL +G+ T D+ +D FI K F +R ++E Sbjct: 179 LPLKKIPGVGKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQRLWEFSHAIDNRKIE 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSE-----HQYCRFISTFIK 293 P ++ + + I Q + + +L+ Q + ++ +K Sbjct: 239 ANRP-RKSLAVENTLPTDIWHLAEAEQIVDELFKKLVFRLQRNWGERSLQEFKKLAIKLK 297 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR--YQKAGVMLGDFF 351 F + L T D L +WQ +R + G+ + Sbjct: 298 FGDF-----------TQTTLERTTDGLS-RERFIELLQQVWQRTNRRSVRLIGLSVHYPT 345 Query: 352 SQGVAQLNLFD 362 + QLNL++ Sbjct: 346 EKVKKQLNLWE 356 >UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2F2_ACICJ Length = 411 Score = 291 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 109/399 (27%), Positives = 165/399 (41%), Gaps = 31/399 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E RP+L KPV+V G V A A+ GV+ P FK + L Sbjct: 37 IAHVDCDAFYASVEKRDRPELTDKPVIVGGGTRGVVAACCYIARLSGVRSAMPMFKARKL 96 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD------ 115 V + YA + + + + L+P V+ SIDEA DL+G Sbjct: 97 CPDA--VVIAPEMRKYAAAAAEIRALMATLTPLVQPLSIDEAALDLSGTAALHRAPPAVV 154 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 L+ F R+ V +TV +G+A + LAKLA K G + Sbjct: 155 LSRFARQ----VEAEVGVTVSIGLAANRLLAKLAAERDKPRGFAVLG-------AEAAAV 203 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 ++ PV + G+G +++KL MGI V LA + R R RG Sbjct: 204 LAPEPVGILPGVGPALARKLAGMGITRVGQLAALNDRAARARLGEDGPMLAARARGIDPR 263 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ T + I +F E I D S+ + + + A +LR+E + +KT+ Sbjct: 264 PIDPARAT-KSISAETTFAEDIDDAASLARVLFPLCEKLARRLRAEGFAAAGLVLKLKTA 322 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F ++ +V+L PTQ + I AA L AG RY+ G+ Sbjct: 323 RFE------THTHAVRLTAPTQLAETIFEAAKPVLMRA--AGPRYRLIGIGAARLTDAAE 374 Query: 356 A-QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 A + +L D PR + + ++ L AK G G + G Sbjct: 375 ADRGDLVDQETPRRAARE--DAVERLRAKFGTGIIRRGG 411 >UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria RepID=C8WGA6_EGGLE Length = 448 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 94/414 (22%), Positives = 157/414 (37%), Gaps = 29/414 (7%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+NAFYAS E RP+L G P+VV + G V+A++A+AKA GVK G+ ++ Sbjct: 29 VIFHSDMNAFYASVEQAERPELRGVPLVVGGHEELRHGIVLAKSAQAKAAGVKTGEALWE 88 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RD 115 + G+V YE+Y S + + VE + +DEA+ DLTG D Sbjct: 89 ARAKCP--GLVVVPPRYEVYQAYSAMARRIYYQYTDLVEPFGLDEAWLDLTGSLPLLGGD 146 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 EI + TV VG++ K AK + K + + R Sbjct: 147 PARTAAEISGRIKAELGCTVSVGVSWNKIFAKFGSDFRKPDA------ITFITPQNYRCR 200 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + PV ++ +G KL + GI + +LA +R+ + RGE Sbjct: 201 VWEAPVSELLYVGAATRAKLHSSGIDRIGELACASPELLRRRLGKIGLVLRAFARGEDAT 260 Query: 236 QLEEFAPTKQEIICS-RSFG------ERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 ++ + + E+ + +SFG I + + + A++LR + Sbjct: 261 PVKPYDQARNEVDRTVKSFGNGLTAPHDIVSASDAKALVYLLSESVAQRLREARFRASTV 320 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI--WQAGHRYQKAGVM 346 S ++++ S L T + + A L A H + V Sbjct: 321 SIGVRSAR-----DLASYSRQTTLRRATNVTGVVARTAWGLLAANEPLDGEHPLRGLHVR 375 Query: 347 LGDFFS-QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 + QL L D A R E L +D L + G + + + + Sbjct: 376 ASNLEPCDAPQQLELAFD-ARRRMLEDLDETIDDLRRRFGNTCIQRGAELLDES 428 >UniRef50_A9NFA5 DNA-damage repair protein n=5 Tax=Bacteria RepID=A9NFA5_ACHLI Length = 448 Score = 290 bits (742), Expect = 8e-77, Method: Composition-based stats. Identities = 97/418 (23%), Positives = 154/418 (36%), Gaps = 26/418 (6%) Query: 2 FALCDVNAFYASCETVFRP-DLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFK 57 D+ +FYAS E V R D + P+VV V+A + K+LGV F Sbjct: 37 ILCIDLKSFYASVECVLRGLDPFKTPLVVADKSRGGGSIVLAVSPYLKSLGVPSRCRIF- 95 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNCRD 115 +L ++ + Y + S V+ + + +YSIDEAF DLT Sbjct: 96 --ELPEDLNIIYAKPQMQTYLEYSASVIGVYLDFISEADLYVYSIDEAFLDLTSYLAYYK 153 Query: 116 LTDF--GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR 173 TD EI T+ + LT GI ++KL+ K + + + + + Sbjct: 154 KTDIELAEEILNTITSKLGLTATCGIGPNMIMSKLSMDIEAK--KNPNNIAKWNYDDIKD 211 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 L P+ +WGIG R+ L+ +G+ T+ D+A+ +++ F V+ E G Sbjct: 212 HLWPVTPLSKMWGIGHRMESHLNKLGLFTIGDIANYPKEKLKRRFGVLGEELWYHTHGID 271 Query: 234 CLQLEEFAPTKQEIICSRSFGE-----RITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 L E + +SFG R + I +LR + + I Sbjct: 272 ---LSEIKDKYKLRTKPKSFGSGQVLFRDYSETEIMTIILEMVDDVTRRLRIAKKRAQTI 328 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 S I G S V L PT I D ++ G+ + GV L Sbjct: 329 SLSIGY----TKSVAGGFSRQVTLEQPTSSEATIYQTCQDLFD-MYYEGYPIRTVGVHLS 383 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAM 406 V Q +LF+D QL MD + K G+ ++ + +R Sbjct: 384 KLTDSKVYQYSLFEDAHQLEKEYQLHMTMDKIKHKFGKNSVIRLSSEQEHATAKQRNK 441 >UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=DPO4_EXIS2 Length = 360 Score = 290 bits (742), Expect = 8e-77, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 143/356 (40%), Gaps = 20/356 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E RP L G PV+V + G V + EA+ G+ P + Sbjct: 6 IIHVDMDAFYASVEQRDRPHLKGVPVIVGGPPHARGVVATCSYEARKYGIHSAMPSRRAF 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTD 118 L R V +E+Y +S ++M E++P VE S+DEA+ D+T T Sbjct: 66 QLCPRA--VFVRPRFEVYRAVSAQIMELFLEVTPLVEPLSLDEAYLDVTENNLQMTSATH 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I A + +RT LT G++ +K +AK+A+ K + + + +S Sbjct: 124 IAQYILAEIKRRTGLTASAGVSNSKLVAKIASGHQKPNG------LTVLPPDAVLPFLSG 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQL 237 L + D+ G+G+ + L G TV D+ + I +R GE + Sbjct: 178 LKIGDLHGVGKVTEQTLQKHGFNTVADIQQSPIAELRGLLGRDRGTELYTMAHGEDERMV 237 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 ++ I +F E D ++ + + A + L + CR ++ KT F Sbjct: 238 RPHRE-RKSIGSESTFEEDTEDIDTIFETLKREALSVVKTLNQKELVCRTVTIKWKTEDF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 S L T D ++ T+ + I +G + G+ + + Sbjct: 297 ------QSRSKRYTFLEETADEDTLLRVTTKLFNEIEFSG-PIRLIGMSVSHLEAP 345 >UniRef50_B8GPZ5 DNA-directed DNA polymerase n=2 Tax=Gammaproteobacteria RepID=B8GPZ5_THISH Length = 414 Score = 289 bits (741), Expect = 9e-77, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 164/398 (41%), Gaps = 24/398 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 L D+NAF+AS E + P+L G+PV + C+I + EA+A GV+ G + + Sbjct: 9 IVLVDMNAFFASIEQLDHPELRGRPVGITNGQTGTCIITSSYEARAHGVRTGMRLKEARQ 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-F 119 L ++ + E YA +S +M+ LE ++P +E++S+DEAF D+T + + Sbjct: 69 LCP--DILQIPARPERYARVSTDIMTALESVTPDLEVFSVDEAFLDVTHCQRLLGPPEVI 126 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R ++ TV + + L VG++ KT AK A K G+ + E + ++ + Sbjct: 127 ARRVKDTVREASGLPCSVGMSGDKTTAKWAAKQHKP-----DGLTVIPPWEAAAR-LAPV 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV ++ GI I L+ G+ T D+A + + + F + R +G +E Sbjct: 181 PVTELCGIAGGIGGYLEQRGVYTCGDMAQLPVSELARRFGNLGRRIWLMAQGRDPTPVET 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + + + + + A + +LR ++ Sbjct: 241 RIAPPRSLGHGKVMPPGTRERAVILTYLEHMAFKVGTRLRRHDLLALRFFIGLRAD---- 296 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y + + T DSR + R L+ W +G + + + QL Sbjct: 297 ---YGWIGGTYRTAVATDDSRQLNALCRRMLNEHW-SGEGVSQVQITALEPCPAAG-QLE 351 Query: 360 LFDDNAPRPGSEQ-----LMTVMDTLNAKEGRGTLYFA 392 LFD ++Q VMD +N + G TL A Sbjct: 352 LFDAGQAPGAADQARVRAAHGVMDAINRRYGEFTLAPA 389 >UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus RepID=C7RGQ0_ANAPD Length = 345 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 162/362 (44%), Gaps = 21/362 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D +AFYASCE + P + P+ V +N + N +A+ G+ P F K+ Sbjct: 4 IFHVDCDAFYASCEELRNPKMKNHPLAVGGLSNKSILTTANYKAREFGLHSAMPVFIAKE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ +++ Y S V S ++E + +E S+DEA+ + Sbjct: 64 LCP--NLILLPVDHKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYL----LVETDSPKKLA 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ VL++T + + +GI+ K LAKLA+ K G+ + E + + Sbjct: 118 RKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPH-----GITQI-RKEDLDYFLPNIS 171 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ V GIG++ S++L+ +GI V DL D ++ +F +RG ++ Sbjct: 172 VNKVHGIGKKTSERLNKIGIYKVEDLLKLDYEYLIDNFGKQGAYIYHVIRGVDDRKINP- 230 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + ++ I R+F + D + + + + +++ ++ + ++ IK + F Sbjct: 231 SRVRKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDIKNIQGKTVNLKIKDAKFK-- 288 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 ++ S+ L P ++DI N A L+ + + G + G+ L + + + QL+ Sbjct: 289 ----NHTRSITLQEPIYRAKDIYNEALSLLEDLHK-GEMLRLIGISLSNLQERKLNQLSF 343 Query: 361 FD 362 D Sbjct: 344 LD 345 >UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli RepID=Q38YP4_LACSS Length = 376 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 80/365 (21%), Positives = 154/365 (42%), Gaps = 19/365 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYAS E +PDL KP+++ + G V N A+ GV Sbjct: 17 IIHIDMDAFYASIEEREQPDLRQKPLIIARDPSDTGGKGVVTTANYVARQYGVHSAMSAQ 76 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRD 115 K +L + V + N+ LY +S ++ ++ ++E + DEA+ D+T + Sbjct: 77 KAAELIPKHQAVFKTPNFPLYQSVSAQIHDIFHTVTDKIEPIAFDEAYLDVTENKLGLTH 136 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 + ++ +L+ T L GI+ K LAK+A+ K R L E+ Sbjct: 137 TIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGR------TLVLPEQAIAF 190 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 +S LP++ G+G++ K+ +GI T DL F+ +HF + R +RG Sbjct: 191 LSRLPIEKFRGVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNR 250 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + E+ ++ I ++G+ + ++ + S A A++LR ++ + ++ Sbjct: 251 PV-EYQRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGLTVVLKVR-- 307 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 N Y + L ++ ++ A + +I QA + G+ + + Q Sbjct: 308 ----NRQYETITKRKTLGEYVGNAAELEAIANQIWQSIGQAEVGIRLLGITVTNLAPQTF 363 Query: 356 AQLNL 360 + L Sbjct: 364 ENITL 368 >UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychrophila RepID=DPO4_DESPS Length = 376 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 18/358 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+AS E RP+L KP++V G V EA+ G+ + Sbjct: 6 IIHIDMDAFFASIEQRDRPELRKKPLIVGGLPRGRGVVATCCYEARRYGIHSAMSANRAY 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L V LY ++S ++M+ E + +VE S+DEAF D+T T Sbjct: 66 KLCPHA--VFVKPRMVLYKEVSLQIMAIFREYTKKVEPLSLDEAFLDVTEYLQINGSATL 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 REI A + RT L+ G++ K LAK+A+ K G + E R+ + Sbjct: 124 LAREICALIKLRTDLSASAGVSYNKFLAKIASDLKKP------GGISTVPPEEARQFIDR 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + +G+G+ K+ ++GI+T DL F+ K F RG + Sbjct: 178 LSIGKFYGVGKITKSKMQSLGIQTGKDLRQYSKDFLMKRFGKAGSFFFYNARGLDERPVC 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ I + + +R + + ++ + L + Q + ++ I+ S F Sbjct: 238 PYQN-RKSIGKETTLVQDTNRPEEIRDILINLSSLLGKALENNSQLAQTLTLKIRYSDFT 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 + S+ L P DI L + G+ L G A Sbjct: 297 ------TTTRSLSLQKPFSCPADIEECLPSLLTNCNLTHKPIRLLGISLSKLTYIGSA 348 >UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteobacteria RepID=Q2RNH1_RHORT Length = 421 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 145/377 (38%), Gaps = 30/377 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 A D +AFYAS E P L +P++V G A+ G + P FK + Sbjct: 38 IAHIDCDAFYASVEKRDNPSLRDRPLIVGHPGGRGVATTACYIARRFGARSAMPMFKCLE 97 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V + Y +S +V + + E + R+E S+DEA+ DL+ + F Sbjct: 98 LCPEA--VVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEH-----RFA 150 Query: 121 R-------EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR 173 R I V + +TV +G++ + LAKLA+ K + + Sbjct: 151 RPPAVSLATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQG------FTVIDEAEAP 204 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 L++ +PV + G+G ++L +G+ T+ DL + F + G Sbjct: 205 ALLAPMPVKRLHGVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRG 264 Query: 234 CLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 + T + I +F ++ P + +A+ + R A L + +K Sbjct: 265 GRTISPDRET-KSISAETTFERDLSRLPDLARALGPLSERVARALTRNALAGATVVLKLK 323 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 T F + + +L PT + I AA R L+ G R++ GV + D Sbjct: 324 THDFRIL------TRHARLGDPTARAEVIAGAARRLLERETD-GRRFRLIGVGMADLRPG 376 Query: 354 GVA-QLNLFDDNAPRPG 369 A +LF + P Sbjct: 377 SEADPPDLFARSPPTAR 393 >UniRef50_B2A4V8 DNA-directed DNA polymerase n=5 Tax=Clostridia RepID=B2A4V8_NATTJ Length = 421 Score = 286 bits (733), Expect = 8e-76, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 165/401 (41%), Gaps = 26/401 (6%) Query: 1 MFALCDVNAFYASCETVFRP------DLWGKPVVVLSN---NDGCVIARNAEAK-ALGVK 50 + DVN+ Y S E +R DL P VV + G V+A++ AK ++ Sbjct: 5 IIFHIDVNSAYLSWEAAYRLQKGAQLDLRQVPSVVGGDSQKRRGIVLAKSIPAKSKFKIQ 64 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+ + + NY+LY SN ++ L E SP ++ YS+DE F D T + Sbjct: 65 TGELLSSARKKCP--DLFVVPPNYDLYLRCSNAMVELLYEYSPFIQRYSVDEVFLDFTNM 122 Query: 111 -RNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + D I+A V + TV +GI K LAKLA+ K V L Sbjct: 123 EKQFGDYLTAANTIKARVKEELGFTVNIGIGPNKLLAKLASEFKKP-----DRVHTLFPE 177 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E KL LPV +++ +GR KKL GI T+ +LA T ++ Sbjct: 178 EIPTKLW-PLPVGELFMVGRATEKKLLDRGITTIGELAKTPRNKLKLWLKSHGLLIWDFA 236 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G + + + S + E + D + R + S + + +LR H Y + ++ Sbjct: 237 NGIEESSVRPEGFPMKGLGNSTTTPENVADKETARLWLLSLTEKVSSRLRDAHCYAQVVN 296 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 IKTS F KLL PT ++ I + L+ +W + G+ L Sbjct: 297 LSIKTSQF------ISYGKQKKLLNPTNSTKVIFETGKKLLNELWDEEEPLRHIGISLSS 350 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQ-LMTVMDTLNAKEGRGTL 389 S QL++FD + SE+ +D + AK G +L Sbjct: 351 LSSSKSYQLSMFDKLSIDTDSEESFYKAIDKIRAKHGETSL 391 >UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacillus RepID=A8YTI5_LACH4 Length = 406 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 146/369 (39%), Gaps = 20/369 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-----NNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYAS ET P+L K +V+ G V N A+ GV P Sbjct: 49 IIHLDMDAFYASVETQRNPELKNKALVIGQDPRNNGGHGVVATCNYVARKYGVHSAMPAI 108 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL 116 K L + +V +++ Y +S ++ S + E++ +VE ++DEA+ D+T + ++L Sbjct: 109 KAVKLIPKSELVFVRPDFKKYRSVSAKIHSFMHEITDKVESIALDEAYLDVTHNKLGQNL 168 Query: 117 T-DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 ++ + L G++ K LAK+ + AK + R V L +Q Sbjct: 169 AVQVAIGLQRRIRTELGLNSSFGVSYNKFLAKMGSEYAKPFGRT----VILPYEAKQ--F 222 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + ++ G+G + ++L MGI T DL + K F + + G Sbjct: 223 LGMQKIEKFPGVGPKTQEQLHEMGIYTGADLQKVADFVLIKKFKKMGYFLAQHAHGIDLR 282 Query: 236 Q-LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + ++ I R++ I I Y ++L+ + + + + ++ Sbjct: 283 PVIADSDTNRKSIGMERTYEPAIYTRDEALTHIRHYCKHLEDELKKRNFFAQTVVIKVRD 342 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA-GHRYQKAGVMLGDFFSQ 353 + F + KL P+ D ++A D + GV + DF Sbjct: 343 NDFD------TVTKRRKLTKPSNSQYDYYDSARELFDKTSNFLEKGIRLIGVTVTDFKKD 396 Query: 354 GVAQLNLFD 362 +NLFD Sbjct: 397 EYQTINLFD 405 >UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHB3_CORU7 Length = 477 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 153/366 (41%), Gaps = 20/366 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIA-RNAEAKALGVKMGDPWFKQKDL 61 A D++AFYAS E + RP L +PV+V + V+A + EA+A G + P + L Sbjct: 5 AHIDMDAFYASVEQLTRPTLRDRPVLVGGMSGRGVVAGASYEARAYGARSAMPMHQAIRL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R + LY +S R+ + E + VE S+DE F + G+ + + Sbjct: 65 CRN-RAIVIQPRSVLYKMISRRIFQVIAEHAGVVEQLSVDEGFAEPQGLVDAAAARRWAE 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 +++ V + T L +G+A TK AK+A+ AK + +E + PV Sbjct: 124 DLQRAVEEATELPCSIGMASTKLDAKMASDLAKPHG--------IFVVEDRMATFGPRPV 175 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D+WGIGR KL +G+ T+ D D ++ V G+ + A Sbjct: 176 GDLWGIGRVAQAKLADIGVHTIQQFVDMDPTDVKSLLGKVGLEVQVMAGGDDPRPVAPRA 235 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++I ++ Y + + A +A +LR + + R I+ I+TS FAL Sbjct: 236 EA-KQISAEQTLPVDARTYRDVLNIMELSARQAYRRLRKDGRAARTITVKIRTSDFAL-- 292 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 ++ S L PT D ++ AA L +G + GV Q LF Sbjct: 293 ----HTRSTTLPAPTDDFEQLLRAARAVLPRPEDSG-AVRLVGVGFSGLSHD--RQEMLF 345 Query: 362 DDNAPR 367 + + Sbjct: 346 PELSHP 351 >UniRef50_C9AAQ9 DNA directed DNA polymerase n=4 Tax=Enterococcus RepID=C9AAQ9_ENTCA Length = 464 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 95/426 (22%), Positives = 167/426 (39%), Gaps = 30/426 (7%) Query: 2 FALCDVNAFYASCETVFRP-DLWGKPVVVLSNNDG----CVIARNAEAKA-LGVKMGDPW 55 DV +FYAS E + R D +VV+S++D V+A + +AK+ LG+ Sbjct: 14 ILFIDVKSFYASVECISRGLDPIQAMLVVMSHSDNTGNGLVLAASPKAKSVLGISN---V 70 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELS--PRVEIYSIDEAFCDLTGVRNC 113 + +L + S Y + +V + + + +YSIDE DLT + Sbjct: 71 TRNDNLPTHPDLYKASPRMSFYIKENTKVNNVFRKYVGQDDLLLYSIDETMMDLTRTLDL 130 Query: 114 RDLTD----------FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGV 163 ++I+ + + T L V +GI LAKLA K R + Sbjct: 131 FIPDKTISREEKRWLIAQQIQKDIYETTKLYVTIGIGDNPLLAKLALDNESKHNRSL--I 188 Query: 164 VDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE 223 + + + K+ P+ + WGIGRR K+L MGI+T+ LA +R ++ E Sbjct: 189 AEWTYDDVPTKVWQIAPMTEFWGIGRRTEKRLHLMGIETIEQLAHASPDLLRSRMGIIGE 248 Query: 224 RTVRELRGEPCLQLEEFAPT--KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSE 281 + G L E P ++ S+ + I A + A ++R Sbjct: 249 QLYHHAHGIDRTILSEPTPQVMEKSYGNSQVLHRNYYLQEEIEIVIKEMAEQVAARIRRH 308 Query: 282 HQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQ 341 H I+ +I A E G S +K+ PT ++R ++ + G + Sbjct: 309 HCQTACINVYIGV---AFGETASGFSRQMKIP-PTDNTRKLVAHCLFLFRKFY-TGQVVR 363 Query: 342 KAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 G+ QL+LF+ + +L ++D + K G ++ A ++ Sbjct: 364 HIGITYSKLVYTENVQLDLFEQAEAQLRQRKLDLIIDKIREKYGFTSIVHATSRMEGARA 423 Query: 402 MKRAML 407 + R+ L Sbjct: 424 IARSKL 429 >UniRef50_Q2SS65 ImpB/MucB/SamB family protein n=3 Tax=Mycoplasma mycoides group RepID=Q2SS65_MYCCT Length = 408 Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 81/405 (20%), Positives = 165/405 (40%), Gaps = 24/405 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI-ARNAEAKALGVKMGDPWFKQKD 60 D++AF+ASC + P+L KP+V+ ++ D +I A + EA+ +K P FK K Sbjct: 6 IIHIDMDAFFASCMQLKHPELKNKPIVISNSFDKSIISAASYEARKYNIKAAMPLFKAKK 65 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEE-LSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 L+ + ++ ++ +++S+++ ++ + ++EI SIDEA+ D++ + D+ Sbjct: 66 LYPK--IISIRADMNFISNISSQIWEFIKTNYTNKIEIASIDEAYLDVSDLILNIDVLQL 123 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 + I+ + +LT +GI + AK++ K + L+ + + + + Sbjct: 124 AKNIQKDIYNHFNLTCSLGIGFNRFSAKMSTSLNKPNG------ITLTTITNFKHNIWPI 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P++ ++G+G K L+ IKT+ DLA I + N E G + Sbjct: 178 PINKMYGVGESSIKILNHTKIKTIKDLALLSDAQIYELLNKKGLVLKNEALGLGSDYINY 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT----S 295 + + I + I Y + I + + KL C+ I I+ Sbjct: 238 LSSEYKSISKETTLNTPIYQYDEIETIILNLSKFITNKLVKNQLLCKTIEIKIRYKIDEK 297 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F + + L T D I N+A +++ GV + + Sbjct: 298 IFDKQKHLTSKHKQITLKNHTNDLEKIYNSAIDCFYNLYEQNKGILLIGVGVSKLIHKNQ 357 Query: 356 --AQLNLFDDNAPRPGSEQLMTVMD------TLNAKEGRGTLYFA 392 QL++ +N +Q+ + +N K + ++ A Sbjct: 358 NWVQLDI--NNQINIDKKQIDNALKIENMIFNINKKFKKPVIWKA 400 >UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_STRCO Length = 479 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 149/375 (39%), Gaps = 23/375 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E +P L GK VVV G V + EA+ GV P + + Sbjct: 7 ILHLDMDAFFASVEQASKPSLRGKAVVVGGLGPRGVVATCSYEARVFGVHSAMPMGQARR 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF- 119 L + +ELY +S +VM L ELSP VE S+DEAF DL RD Sbjct: 67 LAPHAAYLV--PRFELYRSISEQVMRLLRELSPLVEPLSLDEAFVDLDAGGAARDAETAR 124 Query: 120 --GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 G ++R + T LT VG+A +K LAK+A+ AAK + L +R ++ Sbjct: 125 LAGTKLRTDIRTVTGLTGSVGLAASKMLAKIASEAAKPDG------LVLIPPGTERAMLE 178 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQ 236 + V + G+G L GI TV ++A+ + + Sbjct: 179 PMTVRTLPGVGPATGDHLRRAGITTVGEIAEAGEDELVRLLGKAHGHALYAMALARDERP 238 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + T + + ++ I D + + A R +LR+ R I ++ Sbjct: 239 VVAERET-KSVSVEDTYDVDIHDRVRVGVEVGRLADRCVRRLRASGLSGRTIVLKVRRYD 297 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F+ + S L PT D + AA R LD++ G + GV + Sbjct: 298 FS------TLTRSETLRGPTDDPAVVREAAARLLDSVDTTGG-VRLLGVGVSGL--ADYT 348 Query: 357 QLNLFDDNAPRPGSE 371 Q +LF A E Sbjct: 349 QEDLFAQAAGDRAEE 363 >UniRef50_A7HFE4 DNA-directed DNA polymerase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HFE4_ANADF Length = 459 Score = 284 bits (727), Expect = 5e-75, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 155/421 (36%), Gaps = 53/421 (12%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ F+ S E + P L GKPVVV + G V A + E + LGVK G F+ Sbjct: 18 ICCLDLDTFFVSVERLLDPTLEGKPVVVGGKPGSRGVVTAASYEVRRLGVKSGMSLFEAG 77 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 R + + +++Y + RV +P V + SIDE + D +G Sbjct: 78 K--RAPNAIYLPTRHDVYGTYAERVREIARRFAPTVRVASIDEMYLDFSGCERLYRSAGA 135 Query: 120 GRE------------------IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG 161 RE + + L G+A +K +AK+A+ AK Sbjct: 136 ARENGAEDRAGDAIIEGAVLQLTTAIFDELGLPSSAGVATSKVVAKVASALAKPRG---- 191 Query: 162 GVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV 221 V L +R +++ LPV GIG KL A G +T+ +A+ + ++ F Sbjct: 192 --VMLVPAGVERAVLAPLPVRSFPGIGPVAEAKLHAAGYQTLGAVAEASLADLQTIFGAW 249 Query: 222 LERTVRELRGEPCLQLEEFAPTKQ----------EIICSRSFGERITDYPSMRQAICSYA 271 R ++G L P I R+F E +TD S+ +C Sbjct: 250 AASISRGVQGLGSGDLCRERPAFAEHDPEGETVGSISNERTFREDVTDPASIEAVLCGLC 309 Query: 272 ARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 R + R H R ++ ++ + F + A T ++ Sbjct: 310 ERVCWRARRRHVKARTVTLKLRYADFHTLTRSHTTMA-------TNSELELYPIVKEMFA 362 Query: 332 AIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYF 391 A + GV L + QL LFD +E++ V+D + A+ G + Sbjct: 363 AARTRSLPIRLLGVQLSSLGT--FEQLPLFD------RNERVGAVVDGIRARFGFAAVSL 414 Query: 392 A 392 A Sbjct: 415 A 415 >UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0S0R3_FINM2 Length = 347 Score = 284 bits (726), Expect = 6e-75, Method: Composition-based stats. Identities = 86/361 (23%), Positives = 155/361 (42%), Gaps = 19/361 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 F D++AF+ASCE + P L P+VV + G + N EA+ G+ P F+ K Sbjct: 5 FLHFDLDAFFASCEILDNPKLKHVPMVVGGRSQRGIITTANYEARKYGLHSAMPIFQAKK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + +V + ++E Y S +V L S +++ SIDE D++ +R D + Sbjct: 65 IVP--NLVIVAPDFEKYRRNSEKVFKVLSSFSNKIQKMSIDEGCMDISHIRM--DRLELA 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I+ V +T L++ +GI+ +LAKLA+ K + + + ++ L Sbjct: 121 NLIQENVRIKTGLSISIGISYNMSLAKLASDWNKPHGIK------IITQDDIPNILLDLK 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + GIGR+ +KL+ +GIK V DL D +R+ F E +RG QL+ Sbjct: 175 VGKIQGIGRKSEEKLNKIGIKKVSDLYDLSRNNLRELFGKFGEVIYDRIRGIDERQLD-L 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + ++ I +F + +Y + ++ ++ L ++ + I IK + F++ Sbjct: 234 SRIRKSIGVEYTFERDLKNYNELLNKASEFSEELSDDLHKKNIKAKTIRIKIKLNDFSV- 292 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + S+ L DS DI + + + G+ + QL Sbjct: 293 -----ITKSMTLEEYISDSSDIFRIVKYLVVNT-KIEKSVRLFGITAANLSDTTFEQLKF 346 Query: 361 F 361 Sbjct: 347 L 347 >UniRef50_B7LX10 Protein impB n=4 Tax=Enterobacteriaceae RepID=B7LX10_ECO55 Length = 326 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 148/263 (56%), Positives = 191/263 (72%), Gaps = 2/263 (0%) Query: 153 AKKWQRQTGGV-VDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDI 211 K+W + +G V + N R KL+ PV +VWG+GRR+++KL+A+GI T L LA + Sbjct: 65 TKQWPQFSGVVALTAENRNRILKLLGLQPVGEVWGVGRRLTEKLNALGINTALQLAQANT 124 Query: 212 RFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYA 271 FIRK+F+V+LERTVREL GE C+ LEE P KQ+I+CSRSFGERITD +M QA+ YA Sbjct: 125 AFIRKNFSVILERTVRELNGESCISLEEAPPAKQQIVCSRSFGERITDKDAMHQAVVQYA 184 Query: 272 ARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 RAAEKLR E QYCR ++TF++TSPFA+ EP Y N+A KL PTQDSRDII AA R+L+ Sbjct: 185 ERAAEKLRGERQYCRQVTTFVRTSPFAVKEPCYSNAAVEKLSLPTQDSRDIIAAACRALN 244 Query: 332 AIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYF 391 +W+ G+RY KAGVML DF G+AQ LFD+ PR SE+LM +D LN G+G ++F Sbjct: 245 HVWREGYRYMKAGVMLADFTPSGIAQPGLFDEIQPRKNSEKLMKTLDELNQ-SGKGKVWF 303 Query: 392 AGQGIQQQWQMKRAMLSPRYTTR 414 AG+G +WQMK+ MLSP YTT+ Sbjct: 304 AGRGTAPEWQMKQEMLSPSYTTQ 326 >UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTM8_9FIRM Length = 381 Score = 283 bits (725), Expect = 7e-75, Method: Composition-based stats. Identities = 73/368 (19%), Positives = 156/368 (42%), Gaps = 25/368 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYA+ E P + KP+V+ + G V N +A+ G+ Sbjct: 27 ILHVDMDAFYANVEARDNPAIAYKPIVIAKHPKLTGGRGIVSTCNYKAREYGIHSAM--- 83 Query: 57 KQKDLFRRCGVVCF-SSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCR 114 + F+RC F + ++ Y ++S ++ + + + +E S+DEA+ D+T + + Sbjct: 84 TAAEAFKRCPHAVFIAGDWSHYQEVSQQIRTIFAQYTDLIEPMSLDEAYLDVTHNKLGIQ 143 Query: 115 DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 T + I+A + +LT +G++ K LAK+A+ K + + + ++ + Sbjct: 144 SATHLAQRIQAQIKAELNLTCSIGVSYNKFLAKIASDYRKPFG------ITVVTPDQALE 197 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 + LP+D +G+GR+ GI T DL ++ + +HF + + ++RG Sbjct: 198 FLDDLPIDKFYGVGRQSVPYFHQRGIMTGADLRAIELEDLIEHFGKMGKSLYYKVRGVHD 257 Query: 235 LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 ++ ++ I +F + + + + A+ R E L++++ + + ++ I+ Sbjct: 258 APVQPHRE-RKSIGKETTFIQFLAEEEGVLDALTQLTKRVVEILKAKNFHAQTVTLKIRY 316 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF--S 352 F + + L +P+QD I A + + GV Sbjct: 317 DDFE------TLTRQLSLGSPSQDVEVISQAVQELWELHGHLHKSVRLLGVSTAGLIQLD 370 Query: 353 QGVAQLNL 360 + QL+ Sbjct: 371 KVHTQLSF 378 >UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomycetales RepID=C7QBJ0_CATAD Length = 834 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 92/390 (23%), Positives = 152/390 (38%), Gaps = 33/390 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E + +P L GKPVVV N G V + EA+A GV + Sbjct: 12 IFHVDLDAFYASVEQLHKPSLRGKPVVVGGIGNRGVVSTASYEARAFGVHSALATGIARR 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT--- 117 + + Y S RVM+ + ELSP VE S+DEAF D++ + D T Sbjct: 72 RAPNAAYLI--PRFGAYQAYSERVMALMHELSPLVEPLSLDEAFIDISHLFGSLDTTTPH 129 Query: 118 -------DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 ++R + T LT VG +K +AK+A+ A K + + Sbjct: 130 NATLEARRIAEDLRTRIKNETGLTASVGAGTSKLIAKIASDAEKPDG------LVVIEPG 183 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVREL 229 ++ + LPV +WG+G +++L +G TV DL + + Sbjct: 184 TEQTWLDPLPVRALWGVGPATAERLRKIGATTVADLRTLSLTELTTVVGASYGTTLYAIA 243 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 RG+ + + + ++ E + D ++ + R + ++R + R I+ Sbjct: 244 RGQDDRDVSTDREM-KSVSVEDTYAEDLLDPATITAHMDDLVTRLSTRIRKAGRSGRTIT 302 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRS----LDAIWQAGHRYQKAGV 345 ++ F S S PT D I A R + A Q+ + GV Sbjct: 303 IKVRGHDFT------TVSRSETTPNPTDDLTTIRAATHRMLPGAVAAATQSVPGIRLLGV 356 Query: 346 MLGDFFSQGVAQLNLFDDNAPRPGSEQLMT 375 L AQ++LF + ++ Sbjct: 357 GLTGL--AEWAQVDLFTAAEDLDAALEIWE 384 >UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidobacterium RepID=A1A051_BIFAA Length = 471 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 90/423 (21%), Positives = 158/423 (37%), Gaps = 48/423 (11%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AF+AS E P+ KPV++ N V A N EA+ G+ + + L Sbjct: 52 LHIDMDAFFASLEVARHPEYADKPVIIGIGNRSVVSAANYEARKYGINSAMASSRARKLC 111 Query: 63 RRCGVVCFSSNYELYADMSNRVM-STLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDFG 120 V + Y +MS R+ ++ R+E S+DE + D++G + + G Sbjct: 112 P--NGVFLPVDIHYYREMSRRIFTEVFSRVTDRIEQVSVDECYMDVSGALLRWKSPRAIG 169 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR V +R H+T VGIA K +AK+A+ AK + + R + + +P Sbjct: 170 AWIRDQVARRYHITCSVGIAANKLVAKMASTNAKPDGM------LMIPVARHAEFVQMMP 223 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLER--TVRELRGEPCLQLE 238 + + GIG + K+L+A G+ +V DLA + + + + RG + Sbjct: 224 LRGIPGIGPSLEKRLNAWGVDSVADLAKMSMESLEQATGSAISARGLYMAARGLDDRPVA 283 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + R+F + D + + A LR R + ++ + Sbjct: 284 P-RAQGKSVGAERTFDKDTQDMRQVTSMLRWCCDDVAGTLRRRGLMARKVMVKLRFPDLS 342 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW----------QAGHRYQKAGVMLG 348 + L PT + + L A+ + AG+ G Sbjct: 343 ------YATKGHTLDCPTDAASMLYPQCVALLLAMMGMPESSIDAISLTRPVRLAGMSAG 396 Query: 349 DFF--SQGVAQLNLFD--------------DNAPRPGSEQL---MTVMDTLNAKEGRGTL 389 + QL+L D D P SE+L +D + K G+G++ Sbjct: 397 GLVEAADAAVQLSLDDMLEEQNEAQRGRGTDTEPSTQSERLRGAEAALDAVRLKYGKGSV 456 Query: 390 YFA 392 Sbjct: 457 RLG 459 >UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_PSEU2 Length = 354 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 74/365 (20%), Positives = 137/365 (37%), Gaps = 22/365 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D + FYA+ E PDL GKP+ V + G + N EA+A GV+ Sbjct: 6 IIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRHAL 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + + Y + S + + + + +E S+DEAF D++ + T Sbjct: 66 KLCP--DLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++IR V + H+TV G+A K LAK+A+ K + + ++ + +++ Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNG------LFVITPDQVEEFVAS 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G+ + KL +GI DL + + F ER G ++ Sbjct: 178 LPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQ 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 +Q + ++ + D + + + + ++ R F+K Sbjct: 238 N-DSRRQSVSVENTYDTDLPDLAACLEKLPDLLETLSGRMARMEGQYRPGKPFVKVKFHD 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG-DFFSQGVAQ 357 + L + RD+ + A + G + G+ + Q Sbjct: 297 F---------TQTTLEQSGAGRDLGSYEQLLAQAFARGGKPVRLLGIGVRLHDLRAAHEQ 347 Query: 358 LNLFD 362 L LF Sbjct: 348 LELFS 352 >UniRef50_A0AM11 Complete genome n=24 Tax=Listeria RepID=A0AM11_LISW6 Length = 418 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 94/416 (22%), Positives = 165/416 (39%), Gaps = 18/416 (4%) Query: 1 MFALCDVNAFYASCETVFRP-DLWGKPVVVLSNNDG---CVIARNAEAKA-LGVKMGDPW 55 +F + +N F+AS E V R + +VV+SN + V+A + K +K G Sbjct: 6 IFYVLILNRFFASVECVKRRLNPLDAYLVVMSNAERAGGLVLAATPKMKQDHHIKTGSRM 65 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNC 113 ++ +R ++ +LY ++ + + + P + +YSIDE F D+TG Sbjct: 66 YELPTWDKR--IIIAPPRMKLYLKVNAMIQAIFKRYVPAEFIHVYSIDECFLDITGSHLL 123 Query: 114 -RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ 172 + R+I+ +L+ L V VGI LAKLA K + G+ + + Sbjct: 124 FGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLALDNVAKNR--DDGIAEWRYADVP 181 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGE 232 + +DDV GIGRR +L MGI + L+ T ++K V+ E+ G Sbjct: 182 ETIWKIRHLDDVCGIGRRTVVRLQKMGIFNMYQLSQTPPPVLKKAMGVIGEQLYYHAHGI 241 Query: 233 PCLQLEE-FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 L E + P + S+ + I A +LR H I Sbjct: 242 DYSLLNEKYVPVSKSYGKSQILERDYHASAEVEIVIREMVEEVAMRLRQNHVDTAVIHLS 301 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I S +++ + + + + T S +I + + + + G Sbjct: 302 IGYSKYSIKKGFSHQAK----IPSTSSSHALIPYFLQLFRR-YDEREPVRSIAISCGKIT 356 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 + QLNLF+D + EQL +D + + G +L A + +KR+ + Sbjct: 357 LKTGLQLNLFEDTSHTLNQEQLEITVDKIRTRYGFKSLMHASSLLNGATGLKRSEM 412 >UniRef50_B3E013 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E013_METI4 Length = 365 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 82/357 (22%), Positives = 151/357 (42%), Gaps = 21/357 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFK 57 +F D++AFY S E + P+ P+ V + N G ++ + EA+ GVK G P + Sbjct: 26 LFFFVDLDAFYVSVERLRHPEYREMPMAVYTGSLNGRGVIMTASYEARKYGVKSGMPIRQ 85 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 L+ G++ +++ LY + SN V S L+ S R+E SIDE + D Sbjct: 86 A--LYHCPGIMLVAAHPSLYEEYSNSVYSLLKRFSERIERVSIDENCLVVPSSI---DPE 140 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 I+A + + L +G+ K +AK+A AK + + ++ ++ Sbjct: 141 TTATAIQAAIGAKIGLPSSIGVGSNKLIAKMACDLAKPQG------IRVIPPGYEKAFLA 194 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV+ + G+G K AMGI T+ DL+ D + +R+ F +G L Sbjct: 195 PLPVEKIPGVGPATLKIFHAMGIVTIDDLSKVDEQTLREKFGKRGAYFYNAAQGIDKSPL 254 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + +F I ++ +++ + S + A+ LR E + + ++ S F Sbjct: 255 QLERTPR-SLSREITFDRDIKNFSILQRVLVSLSRDLADSLRKEKLVAKTVFLKLRYSDF 313 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 + N L +PT D +I L + + G+ L + ++ Sbjct: 314 STNL------RQFSLSSPTDDPTEIATCGLLLLKRNIKKEKALRLIGLGLRNLTAKT 364 >UniRef50_D2LRT2 DNA-directed DNA polymerase n=3 Tax=Bacillus RepID=D2LRT2_BACS4 Length = 424 Score = 281 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 20/416 (4%) Query: 2 FALCDVNAFYASCETV---FRPDLWGKPVVVLSNND--GCVIARNAEAKA-LGVKMGDPW 55 D+ +FYASC + P L VV ++A K G+K G+ Sbjct: 13 ILCIDMKSFYASCAAIALGEDP-LTSHLAVVGDTAREGSVILAATPALKRDFGIKTGNRL 71 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVRN- 112 F+ + + +++ Y +S +V + ++ P + YS+DE+F D+ G Sbjct: 72 FEV---PKDSKIKLVNASMATYLSISVQVTALFQQYVPPEAIHTYSVDESFLDICGTEKI 128 Query: 113 CRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQ 172 + + +IR + +R L+ +GI ++K+ K Q G+ + + + Sbjct: 129 WGNDRELALKIRDDLFKRFGLSCAIGIGPNMLMSKVCLDIEAKNQ--PSGIAKWTYADVK 186 Query: 173 RKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGE 232 KL P+ +WGIG +I +L +GI ++ LA+ + + K F V+ + G Sbjct: 187 TKLWQISPLQKMWGIGSKIEARLHRLGIFSIGHLANYRLDKLEKVFGVMGNQLYYHAWGI 246 Query: 233 PCLQLEEFAPTKQ-EIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 ++ Q S+ TD +++ I A + R E++ + IS Sbjct: 247 DFSEVGAPILNGQISYGKSQILMRDYTDKLEIKRVILEMCEEVAARARRENKAGQTISLG 306 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I S A ++ + ++ PT + ++ A + D + G ++ + L + Sbjct: 307 IGYSKVARERGFH---RQLTVVEPTNITMELYEACLKIFDKHYN-GSIVRQVSISLANIC 362 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 V QLNLFD + RP L VMD + K G + A R L Sbjct: 363 GDDVIQLNLFDQDQLRPKKRDLGYVMDAIRKKHGPNAVLRAVSYANGGTARHRNTL 418 >UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R7_9GAMM Length = 359 Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 26/371 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D ++FYAS E P L +PV V + G + N EA+ GV+ P + Sbjct: 6 IIHVDADSFYASVEMREDPSLAARPVAVGGSAQRRGVIATCNYEARKFGVRSAMPSSRAL 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L G++ S+ ++LY ++S + ++ + ++E S+DEA+ D++ T Sbjct: 66 QLCP--GLIILSARFDLYREVSQQFHQIFKDYTDKIEPLSLDEAYLDVSDCEQFHGSATL 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++IR + Q +LTV G+A K LAK+ + K G ++ E + + Sbjct: 124 IAQDIRRRIKQELNLTVSAGVAPNKFLAKVGSDWDKP-----DGCFTITP-EDVAEFVVD 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G + KL+ +G T +L + + K F R + G ++ Sbjct: 178 LPVSRINGVGAVTAAKLEKLGATTCGELQSIPLEVLVKRFGKYGSRLAKVAHGLDDRDVQ 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS--EHQYCRFISTFIKTSP 296 + T++ I ++ I M QA+ + E +K Sbjct: 238 T-SRTRKSISVENTYHSDIEQLQQMDQALTRLLDELEGRFHKIEERYRPHKRFVKVKFDN 296 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAA-TRSLDAIWQAG-HRYQK--AGVMLGDFFS 352 F +++ + P + A L + WQ G + AG+ L Sbjct: 297 FEQ--------TTIEEIIPDSGEHWLNEKAYHALLHSAWQRGSRPVRLLGAGLRLEPLHK 348 Query: 353 QGVAQLNLFDD 363 + QL LF Sbjct: 349 EMEMQLVLFSQ 359 >UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bifidobacteriaceae RepID=B7GNF3_BIFLI Length = 448 Score = 281 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 88/416 (21%), Positives = 150/416 (36%), Gaps = 40/416 (9%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 D++AFYAS E P L GKPV++ + V A + EA+ G+ P + L Sbjct: 48 LHIDMDAFYASLEVARNPGLKGKPVIIGTGPRAVVSAASYEARRYGINSAMPAARAHQLC 107 Query: 63 RRCGVVCFSSNYELYADMSNRVM-STLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDFG 120 V + Y MS+R+M ++ R E S+DE + D+ T + + G Sbjct: 108 P--NGVFLPVDMAYYRMMSHRIMHEVFLTVTDRFEQVSVDEGYMDVSTALLEWGRPSAIG 165 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IRA V +R H+T VGIA K +AK+A+ AK L R + + +P Sbjct: 166 AWIRAQVAERFHVTCSVGIACNKLVAKMASTNAKPDGM------LLIPAARSAEFVQMMP 219 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN--VVLERTVRELRGEPCLQLE 238 + + GIG + K+L+A G+ +V +LA D + + G ++ Sbjct: 220 LRGIPGIGPSLEKRLNAWGVHSVAELAQLDETALTRATGSPAAARGLWAASHGLDSRKIT 279 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I + E D + + S A LR + R ++ ++ + + Sbjct: 280 TVREE-KSIGSEETLAEDTRDMRVVCGLLRSACDEVASTLRRKGLVARTLTVKLRFADLS 338 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW----------QAGHRYQKAGVMLG 348 + S + PT + + R L + + AG+ Sbjct: 339 ------YQTRSFTMERPTDTAGVLYPECVRQLKVMLGLPASAESATPLPKTIRLAGMSTS 392 Query: 349 DFF--SQGVAQLNLFD---------DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 + Q +L D + +D + K G F Sbjct: 393 SLSEAAATAVQPSLDDMLEEAANARGQTSQARLHDAEAALDAVRRKFGSKAAQFGA 448 >UniRef50_B9X9L4 DNA-directed DNA polymerase n=3 Tax=Verrucomicrobia RepID=B9X9L4_9BACT Length = 368 Score = 280 bits (717), Expect = 6e-74, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 140/369 (37%), Gaps = 25/369 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AFYAS E P+L GKP++V + G V A + EA+ GV+ P Sbjct: 4 VIFHLDMDAFYASVEQRDNPELRGKPLIVGAPPTQRGVVCAASYEARKFGVRSAMPSVVA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-- 116 K L + Y SN++M + +E SIDEA+ DL+ V DL Sbjct: 64 KRLCP--DGFFIRPRMDHYRAESNQIMQIVAASGAIIEQVSIDEAYLDLSPVCQRSDLDS 121 Query: 117 -----TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 +++ + LT +GIA K LAK+A+ K + L Sbjct: 122 SLLSAVPLAAQLKDKIFSERGLTTSIGIASNKLLAKIASDFNKPNG------LTLIPERD 175 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + + +P+ + G+GR + L G++T+ DL D +R R G Sbjct: 176 KVLFLRPMPIRAIPGVGRVTEEMLKKSGVETIGDLQDFP-GDLRSMVGSFGPTLKRFSFG 234 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 E QL+ + I +F + D ++ + A A KL+ + + I Sbjct: 235 EDNRQLDTGDVI-KSISSENTFLKDTEDRKILKTCLREQAEEIAAKLKRKQIGAQTIQVK 293 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 ++ S F + + + P ++ DI L + G+ + Sbjct: 294 LRYSDFT------TLTRQLSVEEPITEAADIYRLGCYLLAREKLVSRPLRLLGLGVSGLG 347 Query: 352 SQGVAQLNL 360 QL+ Sbjct: 348 ESISRQLSF 356 >UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=Veillonella RepID=D1BPW6_VEIPT Length = 500 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 18/338 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E + P+ G PV+V ++ G V + EA+ GV P + K L Sbjct: 1 MHVDMDAFFASIEQLDHPEYKGHPVIVGGLSSRGVVATCSYEARKFGVHSAMPILRAKKL 60 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDFG 120 + + Y ++SN++ S ++E +P +E SIDEAF +++G+ G Sbjct: 61 CP--DGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKALG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + I+ V ++T L + G+A K LAKLA+ K + + R++++++ LP Sbjct: 119 QAIKDRVFEKTGLIISAGLAPNKFLAKLASDLDKPDG------LVVIPYGREKEVLAPLP 172 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADT-DIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + +WG+G R K L A G + + D + +R G +E Sbjct: 173 IKRIWGVGPRTEKILKAGGFHLIGHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVET 232 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 Q I ++ E +T+ ++ +A R +++LR Y +S ++ F Sbjct: 233 DRKI-QSIGAEETYEEDLTEGRAIELEFRYFANRLSKRLRRRSLYGHTVSIKVRYDDFT- 290 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG 337 S +L TP+ A + + Q Sbjct: 291 -----TVSRQKRLDTPSDHEHVFFETALLLWNKLLQDK 323 >UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_LEGPL Length = 355 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 145/367 (39%), Gaps = 25/367 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P+L KP+ V + + G + N A+ G++ P Sbjct: 7 IIHIDMDCFYAAIEMRDFPELANKPIAVGGDAKHRGVIATCNYAARQFGIRSAMPTAHAL 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L R ++ ++Y S + S L E + +E S+DEA+ D+T C T Sbjct: 67 KLCRE--LILRPVRMDVYQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTESTQCQGSATW 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 EIRA + Q LT GIA K+LAK+A+ K + + E + Sbjct: 125 IAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQ------MVIRPEDVSAFVLD 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV ++G+G ++ +KL A+ IKT DL I ++ + F + +R RG + Sbjct: 179 LPVRKLFGVGPKMEEKLGALNIKTCADLQRYSIEYLLQKFGTMGQRLYELARGIDNRPVN 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ I ++ + + + + + AR +++ + + F+K Sbjct: 239 PER-IRKSISVEETYPKDLPNSEACLAVLPDLMARLEARIQRAGKISGIHNLFVKLKF-- 295 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-- 356 N + D D+I + + G + G+ + + Sbjct: 296 -------NDFQQTTIERVMDKIDLIVLRQLIQEGFARRGMPVRLLGIGI-KLKQENTYQS 347 Query: 357 -QLNLFD 362 QL L D Sbjct: 348 VQLPLLD 354 >UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=DPO4_SHEWM Length = 364 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 69/375 (18%), Positives = 139/375 (37%), Gaps = 36/375 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ ++A+ E P+L GKP+ V + G + N EA+A GV+ Sbjct: 8 IIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARAFGVRSAMASGYAL 67 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L ++ +Y ++S ++ + +E S+DEA+ D+T + C T Sbjct: 68 KLCP--DLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTECKQCQGSATL 125 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + IR + + T LT GIA K LAK+A+ K + + + ++ Sbjct: 126 IAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQY------VITPDMISSFITT 179 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ + G+G+ KKL+ +G+ T +L + + F + + +G + Sbjct: 180 LPLTKIPGVGKVTGKKLEDIGLTTCGELQAYPKSELIERFGKFGKILIERAQGIDERAIS 239 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS--EHQYCRFISTFIKTSP 296 ++ + + + I + ++ + + +K + Sbjct: 240 PHRE-RKSVGVETTLAKDIYTLEQCHGVMPQLIQELGARMSRSAKGRSINKQVVKLKFND 298 Query: 297 FA-LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG- 354 F + + SVKL +++ + Q G + GV +G Sbjct: 299 FKQTTIEHRSDEMSVKLFY------ELLAQSLE-----RQQGRGIRLLGVSVGLACQADS 347 Query: 355 ---------VAQLNL 360 +QL+L Sbjct: 348 NTAKDNQVRESQLDL 362 >UniRef50_C5RD20 DNA-directed DNA polymerase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RD20_WEIPA Length = 372 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 74/355 (20%), Positives = 146/355 (41%), Gaps = 20/355 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-----NNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYA E P+ P+++ + G V N A+ LGV Sbjct: 18 ILHIDMDAFYAQIEMRDNPEYKSIPLILANDPRKTGGRGVVATANYLARNLGVHSAMSAA 77 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRD 115 + L + V + N+ Y +S ++ + + +VE + DEA+ D+T + N + Sbjct: 78 EALKLAPQA--VFVTPNFSKYRGVSQQLHQIFKRYTNKVEPVAFDEAYLDVTENIPNINN 135 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 E++ + + LT VGI+ K LAKLA+ K + + N E R Sbjct: 136 AIQLAHELQQIIYEELELTSSVGISFNKFLAKLASEHNKPSG------LTIINPEDIRSF 189 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + LP++++ G+G + ++K+ ++GI+ DL DT + F +RG Sbjct: 190 LDTLPINEMRGVGAKTAEKMISLGIRNGKDLYDTPQNKLADEFGKSGYIFYERIRGVDDR 249 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + + ++ + R++G + ++ + AA+ L + + + I+ + Sbjct: 250 PVV-WQRERKSMSKERTYGPFLDTEQAIMDELKDLAAKLTASLIKSQLHGKTLVLKIRDN 308 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 F + +L D +I +AA LD + H + G+ + + Sbjct: 309 EF-----QTATHRATRLDFFPNDEDEIYHAAQDILDELGGYHHAIRLLGLTMTNL 358 >UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=Q0FEJ5_9RHOB Length = 391 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 81/397 (20%), Positives = 146/397 (36%), Gaps = 22/397 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 A D +AFYAS E P KP+++ G V A+ GVK P FK L Sbjct: 12 AHIDCDAFYASVEKRDNPKFKDKPLIIGGGQRGVVSTACYIARIKGVKSAMPMFKALKLC 71 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD---LTDF 119 + + + YA S + + ELSP +E S+DEAF DL G Sbjct: 72 PEA--IVIAPRMDAYAKASKEINEMMSELSPSIEPLSLDEAFIDLRGTEKLHGEPPALSM 129 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R ++ + ++ ++ VG++ K LAKLA+ K + + + ++ Sbjct: 130 ARLVQ-RIEKQLKISASVGLSYNKYLAKLASDLDKPRG------FSIIGKYKIEEFLAPK 182 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + +WG+G+ +L+ GI+ DL + + + + + RG + Sbjct: 183 SIGLIWGVGKVAQMRLEQDGIRIFADLQRRSHQELIDKYQNMGDHLWHLCRGIDNRNVIA 242 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +F I + + I + + +++ +S++ I+ Sbjct: 243 KNVI-KSISKETTFSSDINNIEKLDGYIWRLSEQVSQRAKSKNLLGHVITLK------IK 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-QL 358 + + S PTQ + I A R LD + G ++ GV + + QL Sbjct: 296 TKKFKTISRRKTQREPTQIAEKIYAEARRMLDEVASEG-PFRLIGVGISNLIDADKIDQL 354 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 N F D + + G+ + Sbjct: 355 NDF-LKTDEAKKADAERATDLIKKRFGKNAILKGRSL 390 >UniRef50_D1YPB9 Putative DNA polymerase IV n=1 Tax=Veillonella parvula ATCC 17745 RepID=D1YPB9_9FIRM Length = 510 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 146/339 (43%), Gaps = 18/339 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E + P+ G PV+V ++ G V + EA+ GV P + K Sbjct: 5 IMHVDMDAFFASIEQLDHPEYKGHPVIVGGLSSRGVVATCSYEARKFGVHSAMPISRAKK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 L + + Y ++SN++ S ++E +P +E SIDEAF +++G+ Sbjct: 65 LCP--DGIYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKAL 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 GR I+ V ++T L + G+A K LAKLA+ K + + R+RK+++ L Sbjct: 123 GRAIKDRVFEQTGLIISAGLAPNKFLAKLASDLDKPDG------LVVIPYGRERKVLAPL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADT-DIRFIRKHFNVVLERTVRELRGEPCLQLE 238 P+ +WG+G R K L A G + + D + +R G +E Sbjct: 177 PIKRIWGVGPRTEKILKAGGFHLMRHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVE 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 T Q I ++ E +T+ ++ +A R +++LR Y +S ++ F Sbjct: 237 TDRKT-QSIGAEETYEEDLTEGRAIELEFRYFANRLSKRLRRRSLYGHTVSIKVRYDDFT 295 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG 337 S +L TP+ A + + Q Sbjct: 296 ------TVSRQKRLDTPSDHEHVFFETALLLWNKLMQDK 328 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 333 IWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + G+ + + Q +LF+ + ++L +V+D+L +K G + Sbjct: 384 FMDPPGPIRLLGLTVSGLDEEVPMQDSLFESPQDKTE-DKLSSVLDSLESKFGETAVMSG 442 Query: 393 G--QGIQQQWQMKRAM 406 Q ++R Sbjct: 443 ALWQRFHGDNGIRRKR 458 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID... 516 e-145 UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcu... 461 e-128 UniRef50_A4SWQ9 DNA-directed DNA polymerase n=13 Tax=cellular or... 461 e-128 UniRef50_A1U8F5 DNA-directed DNA polymerase n=6 Tax=Gammaproteob... 456 e-126 UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_S... 453 e-126 UniRef50_B7JBK8 UmuC protein n=1 Tax=Acidithiobacillus ferrooxid... 451 e-125 UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alke... 446 e-123 UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM... 443 e-123 UniRef50_B0VH44 Protein umuC n=1 Tax=Candidatus Cloacamonas acid... 443 e-123 UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter... 442 e-122 UniRef50_D2QVG5 DNA-directed DNA polymerase n=1 Tax=Spirosoma li... 439 e-121 UniRef50_Q0VP68 DNA-damage-inducible protein n=4 Tax=Proteobacte... 438 e-121 UniRef50_Q11V03 Nucleotidyltransferase/DNA polymerase involved i... 436 e-121 UniRef50_A1BFA1 DNA-directed DNA polymerase n=7 Tax=Chlorobiacea... 435 e-120 UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter... 434 e-120 UniRef50_Q5ZUT9 SOS mutagenesis and repair UmuC protein n=12 Tax... 433 e-120 UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_... 433 e-120 UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales R... 432 e-120 UniRef50_C6M791 Protein UmuC n=2 Tax=Neisseria RepID=C6M791_NEISI 432 e-120 UniRef50_C8X192 DNA-directed DNA polymerase n=2 Tax=Deltaproteob... 431 e-119 UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomon... 431 e-119 UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved i... 431 e-119 UniRef50_A9E9W4 Nucleotidyltransferase/DNA polymerase involved i... 430 e-119 UniRef50_C6XDV2 DNA-directed DNA polymerase n=2 Tax=Methylovorus... 429 e-119 UniRef50_Q2W5K5 Nucleotidyltransferase/DNA polymerase involved i... 429 e-118 UniRef50_A6ET82 Nucleotidyltransferase/DNA polymerase involved i... 429 e-118 UniRef50_C3X802 DNA-directed DNA polymerase n=1 Tax=Oxalobacter ... 429 e-118 UniRef50_B4YK21 TumC n=1 Tax=Tetrathiobacter kashmirensis RepID=... 428 e-118 UniRef50_B5JVF1 UmuC protein n=1 Tax=gamma proteobacterium HTCC5... 427 e-118 UniRef50_P07375 Protein mucB n=137 Tax=root RepID=MUCB_ECOLX 426 e-118 UniRef50_C7RB82 DNA-directed DNA polymerase n=1 Tax=Kangiella ko... 426 e-118 UniRef50_Q48B37 RulB protein n=30 Tax=Pseudomonas RepID=Q48B37_P... 426 e-118 UniRef50_A5FIG7 DNA-directed DNA polymerase n=10 Tax=cellular or... 425 e-117 UniRef50_Q1QXT4 DNA-directed DNA polymerase n=1 Tax=Chromohaloba... 425 e-117 UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalob... 424 e-117 UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria Re... 424 e-117 UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 424 e-117 UniRef50_C0VGI8 Nucleotidyltransferase/DNA polymerase n=4 Tax=Ac... 423 e-117 UniRef50_C6BX75 DNA-directed DNA polymerase n=1 Tax=Desulfovibri... 423 e-117 UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobi... 423 e-117 UniRef50_B4WV07 ImpB/MucB/SamB family n=6 Tax=Synechococcus sp. ... 422 e-116 UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteob... 422 e-116 UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DP... 420 e-116 UniRef50_Q4FMY4 UmuC n=6 Tax=Bacteria RepID=Q4FMY4_PELUB 418 e-115 UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaero... 417 e-115 UniRef50_C7I5S1 DNA-directed DNA polymerase n=2 Tax=Proteobacter... 417 e-115 UniRef50_Q15TC7 DNA-directed DNA polymerase n=25 Tax=Proteobacte... 417 e-115 UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcu... 416 e-115 UniRef50_A8ZLK7 DNA polymerase V, putative n=4 Tax=Cyanobacteria... 416 e-115 UniRef50_A5Y0S5 UmuC-like protein n=9 Tax=Proteobacteria RepID=A... 414 e-114 UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=... 414 e-114 UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermoth... 414 e-114 UniRef50_D0J481 DNA-directed DNA polymerase n=4 Tax=cellular org... 414 e-114 UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomyceta... 413 e-114 UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomy... 412 e-113 UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class... 412 e-113 UniRef50_D0Z2K2 Error-prone repair protein UmuC n=5 Tax=Photobac... 412 e-113 UniRef50_Q30X29 DNA-directed DNA polymerase n=8 Tax=Proteobacter... 412 e-113 UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collins... 412 e-113 UniRef50_A9W7Y3 DNA-directed DNA polymerase n=10 Tax=Rhizobiales... 412 e-113 UniRef50_C0YV48 Probable RumB/ImpB like DNA repair protein n=1 T... 410 e-113 UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4... 410 e-113 UniRef50_D1R5W7 Putative uncharacterized protein n=1 Tax=Parachl... 409 e-113 UniRef50_B9Z6P1 DNA-directed DNA polymerase n=2 Tax=Proteobacter... 409 e-112 UniRef50_D0KZ56 DNA-directed DNA polymerase n=12 Tax=root RepID=... 409 e-112 UniRef50_A5GPY7 Bacterial UmuC protein homolog (SOS-regulated pr... 409 e-112 UniRef50_C6XEM8 DNA-directed DNA polymerase n=1 Tax=Methylovorus... 409 e-112 UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicro... 408 e-112 UniRef50_C9LED2 UmuC protein n=1 Tax=Prevotella tannerae ATCC 51... 408 e-112 UniRef50_B2FJL0 Putative UV protection and mutation protein n=1 ... 407 e-112 UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_... 406 e-112 UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococ... 406 e-112 UniRef50_A5FU54 UMUC domain protein DNA-repair protein n=2 Tax=A... 405 e-111 UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX... 405 e-111 UniRef50_UPI0000E87FBE DNA repair protein n=1 Tax=Methylophilale... 405 e-111 UniRef50_Q3AKE9 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 405 e-111 UniRef50_D0RPK3 Protein UmuC n=1 Tax=alpha proteobacterium HIMB1... 404 e-111 UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermo... 403 e-111 UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica... 402 e-111 UniRef50_B3E0C4 Nucleotidyltransferase/DNA polymerase UmuC n=1 T... 402 e-110 UniRef50_C6NU08 Error-prone repair protein UmuC n=1 Tax=Acidithi... 401 e-110 UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO... 401 e-110 UniRef50_D1PC12 UmuC protein n=2 Tax=Bacteria RepID=D1PC12_9BACT 400 e-110 UniRef50_Q0ACU7 DNA-directed DNA polymerase n=3 Tax=Nitrosomonas... 400 e-110 UniRef50_B8DRU5 DNA-directed DNA polymerase n=13 Tax=Proteobacte... 400 e-110 UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 154... 399 e-110 UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibri... 399 e-109 UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms Re... 399 e-109 UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteri... 399 e-109 UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria R... 399 e-109 UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobac... 398 e-109 UniRef50_Q1QXW8 DNA-directed DNA polymerase n=1 Tax=Chromohaloba... 397 e-109 UniRef50_Q2YI99 Nucleotidyltransferase/DNA polymerase n=3 Tax=Ba... 396 e-109 UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q... 394 e-108 UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2... 394 e-108 UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral t... 394 e-108 UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2... 393 e-108 UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidet... 393 e-108 UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostri... 393 e-108 UniRef50_Q19NE6 UV protection and repair protein n=9 Tax=Enterob... 392 e-107 UniRef50_B6BWB3 DNA-directed DNA polymerase n=1 Tax=beta proteob... 392 e-107 UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis... 391 e-107 UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomyceta... 391 e-107 UniRef50_A6EED8 Nucleotidyltransferase/DNA polymerase involved i... 391 e-107 UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus ... 390 e-107 UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomyceta... 390 e-107 UniRef50_Q31B23 DNA-directed DNA polymerase n=7 Tax=Prochlorococ... 390 e-107 UniRef50_A6WU94 DNA-directed DNA polymerase n=28 Tax=Gammaproteo... 389 e-107 UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobaci... 389 e-106 UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved i... 388 e-106 UniRef50_D1VXB9 Putative DNA polymerase V subunit UmuC n=1 Tax=P... 388 e-106 UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranu... 388 e-106 UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_H... 388 e-106 UniRef50_Q3B3L9 DNA-directed DNA polymerase n=2 Tax=Chlorobium/P... 388 e-106 UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 387 e-106 UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9... 387 e-106 UniRef50_Q2P505 Polymerase V subunit n=4 Tax=Xanthomonadaceae Re... 387 e-106 UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia deni... 387 e-106 UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DP... 387 e-106 UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatel... 386 e-106 UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_... 386 e-106 UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_C... 386 e-106 UniRef50_A0K1P6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 386 e-106 UniRef50_Q2RYM0 UmuC protein n=2 Tax=Salinibacter ruber DSM 1385... 386 e-106 UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_... 386 e-105 UniRef50_A6DHJ1 Putative uncharacterized protein n=1 Tax=Lentisp... 385 e-105 UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicu... 385 e-105 UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiale... 384 e-105 UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia R... 384 e-105 UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex de... 384 e-105 UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Rosebur... 383 e-105 UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteri... 383 e-105 UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacter... 383 e-105 UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=D... 383 e-105 UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=u... 381 e-104 UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42... 380 e-104 UniRef50_Q31HB8 ImpB/mucB/samB family protein n=1 Tax=Thiomicros... 380 e-104 UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerof... 379 e-104 UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. ... 379 e-103 UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospiri... 379 e-103 UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class... 379 e-103 UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutyl... 379 e-103 UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostell... 379 e-103 UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostri... 379 e-103 UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A... 378 e-103 UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria Rep... 378 e-103 UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved i... 378 e-103 UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=... 378 e-103 UniRef50_B2I3H3 Nucleotidyltransferase/DNA polymerase n=12 Tax=A... 377 e-103 UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_T... 377 e-103 UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae Rep... 377 e-103 UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevi... 377 e-103 UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesti... 377 e-103 UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter h... 377 e-103 UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=... 376 e-103 UniRef50_C2BWE4 DNA-directed DNA polymerase n=1 Tax=Mobiluncus c... 376 e-103 UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimal... 376 e-102 UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella c... 375 e-102 UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteri... 375 e-102 UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacte... 375 e-102 UniRef50_A3M2E2 DNA-directed DNA polymerase n=8 Tax=Acinetobacte... 375 e-102 UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales... 375 e-102 UniRef50_C0LIJ7 Putative DNA polymerase V subunit UmuC n=1 Tax=A... 374 e-102 UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothri... 374 e-102 UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium o... 374 e-102 UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=... 373 e-102 UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 372 e-101 UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bactero... 372 e-101 UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collins... 372 e-101 UniRef50_A0L3I2 DNA-directed DNA polymerase n=1 Tax=Shewanella s... 372 e-101 UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidete... 371 e-101 UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaeroc... 370 e-101 UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved i... 369 e-100 UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiale... 369 e-100 UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia ext... 369 e-100 UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=... 369 e-100 UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus... 369 e-100 UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiri... 369 e-100 UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclass... 368 e-100 UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdema... 368 e-100 UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteri... 367 e-100 UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepI... 367 e-100 UniRef50_Q8VMP6 RuvB protein n=4 Tax=Pseudomonas RepID=Q8VMP6_PSEPU 366 e-100 UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychroph... 366 e-99 UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damag... 365 2e-99 UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomyceta... 364 3e-99 UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaprote... 364 3e-99 UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacte... 364 4e-99 UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 364 4e-99 UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=V... 364 5e-99 UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaeros... 364 5e-99 UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdema... 363 6e-99 UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax... 363 8e-99 UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_L... 363 8e-99 UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms R... 363 9e-99 UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacte... 361 2e-98 UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium s... 361 2e-98 UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus M... 360 4e-98 UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_S... 360 4e-98 UniRef50_Q0KKM4 Putative UV protection protein n=1 Tax=Plasmid p... 360 5e-98 UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttle... 360 6e-98 UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sph... 360 8e-98 UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria Re... 359 8e-98 UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_P... 359 9e-98 UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria Rep... 359 1e-97 UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus... 358 2e-97 UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y... 357 4e-97 UniRef50_Q0EYF1 Putative uncharacterized protein n=1 Tax=Maripro... 357 5e-97 UniRef50_A9NFA5 DNA-damage repair protein n=5 Tax=Bacteria RepID... 357 6e-97 UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophi... 357 7e-97 UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=... 356 1e-96 UniRef50_Q6MCK0 Putative SOS mutagenesis and repair protein UmuC... 355 1e-96 UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa Re... 355 2e-96 UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli ... 355 2e-96 UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidoba... 355 2e-96 UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiop... 355 2e-96 UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacil... 355 2e-96 UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium... 355 2e-96 UniRef50_C9M6E1 UmuC protein n=1 Tax=Jonquetella anthropi E3_33 ... 355 2e-96 UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ... 354 3e-96 UniRef50_A8UAY3 ImpB/MucB/SamB family protein n=5 Tax=Bacilli Re... 353 6e-96 UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=V... 353 7e-96 UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=... 353 9e-96 UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonel... 353 9e-96 UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gam... 353 1e-95 UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteob... 352 1e-95 UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_L... 352 2e-95 UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bi... 351 3e-95 UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerell... 351 4e-95 UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis ME... 351 4e-95 UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 ... 350 4e-95 UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealy... 350 5e-95 UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostr... 350 5e-95 UniRef50_B1YIX5 DNA-directed DNA polymerase n=2 Tax=Exiguobacter... 350 5e-95 UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42... 350 6e-95 UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacter... 350 6e-95 UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH 350 7e-95 UniRef50_UPI0001C34BBE DNA-directed DNA polymerase n=3 Tax=Neiss... 349 1e-94 UniRef50_C2HDM1 Possible DNA-directed DNA polymerase n=83 Tax=Fi... 348 1e-94 UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EW... 348 2e-94 UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis N... 348 2e-94 UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon Re... 348 3e-94 UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=... 347 4e-94 UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR 347 4e-94 UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1... 347 6e-94 UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae b... 346 9e-94 UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomy... 346 1e-93 UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2... 346 1e-93 UniRef50_C8V695 Deoxycytidyl transferase (Eurofung) n=2 Tax=Emer... 345 2e-93 UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0... 345 2e-93 Sequences not found previously or not previously below threshold: >UniRef50_P04152 Protein umuC n=103 Tax=Gammaproteobacteria RepID=UMUC_ECOLI Length = 422 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 422/422 (100%), Positives = 422/422 (100%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD Sbjct: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG Sbjct: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF Sbjct: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN Sbjct: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL Sbjct: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR Sbjct: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 Query: 421 VK 422 VK Sbjct: 421 VK 422 >UniRef50_A0L9G4 DNA-directed DNA polymerase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9G4_MAGSM Length = 421 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 197/421 (46%), Positives = 259/421 (61%), Gaps = 3/421 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +AL D N FYASCE +F+P L GKPVVVLSNNDGC IAR+ EAK LG+ MG P + + L Sbjct: 3 YALVDCNNFYASCERLFQPHLEGKPVVVLSNNDGCAIARSNEAKQLGIAMGAPLHQIQAL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ V FSSNY LY D+S RVM TLE+L+PRVEIYSIDEAF DL G+ + GR Sbjct: 63 IKQHQVALFSSNYPLYGDLSARVMRTLEQLAPRVEIYSIDEAFLDLQGMPAPQR-QILGR 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I V + T + V VGI TKTLAK+AN AKK + GV+DLS+ + RK + LPV Sbjct: 122 TIHQQVKRWTGIPVSVGIGPTKTLAKVANRFAKKSPKT-EGVLDLSDPQWCRKALHQLPV 180 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWG+G R +K+L+ GI T L L+ R+ FNVVLERTVRELRGE + Sbjct: 181 GEVWGVGPRWAKRLNQAGIDTALQLSRMPPPLARQQFNVVLERTVRELRGESVIPFAALP 240 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 +Q I +R+FG++I + +++AI S+ RAAEKLR + + FI T+ F+ + Sbjct: 241 AARQSIATTRTFGQKIHTHDEIKEAISSFTVRAAEKLRKQGLLAAALHLFITTNRFSEQD 300 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y NS + P D+ ++ A +LDAI++ G+RYQKAGV+L S Q +LF Sbjct: 301 LQYKNSLTWSFQQPQDDTLTLLTGAHAALDAIYRPGYRYQKAGVILLGLVSAQHFQPSLF 360 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-IQQQWQMKRAMLSPRYTTRSSDLLR 420 P S LM +D LN K GRGT+ F +G + W M++ SP YTTR SDL + Sbjct: 361 APPPRLPNSRALMRTLDGLNQKMGRGTVRFGAEGPPKPSWGMRQLQRSPAYTTRWSDLPQ 420 Query: 421 V 421 V Sbjct: 421 V 421 >UniRef50_A4SWQ9 DNA-directed DNA polymerase n=13 Tax=cellular organisms RepID=A4SWQ9_POLSQ Length = 450 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 189/424 (44%), Positives = 270/424 (63%), Gaps = 4/424 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FAL DVN FY SCE VF+P L P+VVLSNNDGC +AR+AE KALG+K G PWF+ ++L Sbjct: 28 FALVDVNNFYVSCERVFQPKLEDVPMVVLSNNDGCAVARSAEVKALGIKTGTPWFQMQEL 87 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDFG 120 ++ G+ +SSNY LY DMS+RV+ L +P +E+YSIDE+F + T ++ +D + G Sbjct: 88 AKKHGIQAYSSNYTLYGDMSSRVVEVLRAFTPNLEVYSIDESFLQIETVLKQYQDTVELG 147 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSA 178 R ++ V T L V VGI +KTLAK ANH AKK Q+ GV D++ E + MS Sbjct: 148 RSMKEKVRDTTGLPVCVGIGASKTLAKFANHLAKKHQQFA-GVCDVNAMPKEEFYQWMSE 206 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 V +VWGIGR+++KKL A I +V DL + +R+ + VV+ER ELRG CL+LE Sbjct: 207 TSVAEVWGIGRQLAKKLKAQNIHSVFDLLQASPQAMRQQYGVVMERLCYELRGVSCLKLE 266 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E AP KQ+II SRSFG+ +T + +++ +AARAAEKLRS++ ++ FI+T+PF Sbjct: 267 EVAPAKQQIIASRSFGKLVTKLEELAESVAMHAARAAEKLRSQNGTTGALTVFIQTNPFK 326 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 NEP + S ++ L P+ ++ + NAA + L I+Q+G RY+KAGV+L + AQ Sbjct: 327 QNEPQHHQSITIPLSDPSDNTLTLTNAALKGLKQIYQSGFRYKKAGVILNLISDKPTAQQ 386 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +LF+D + S LM +D +N++ G + A G +Q+WQM+ SP YTTR +L Sbjct: 387 SLFEDIETKGKSAHLMKAVDEINSRFGNAAIRSAAMGTKQEWQMRSGNRSPNYTTRWDEL 446 Query: 419 LRVK 422 + Sbjct: 447 PVAR 450 >UniRef50_A1U8F5 DNA-directed DNA polymerase n=6 Tax=Gammaproteobacteria RepID=A1U8F5_MARAV Length = 430 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 211/423 (49%), Positives = 284/423 (67%), Gaps = 4/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FALCD+N+FYASCE +F P G+PVVV SNNDGC +AR+ EAKALG+KMG P F+ ++ Sbjct: 8 VFALCDMNSFYASCEQLFNPAFRGRPVVVASNNDGCAVARSPEAKALGIKMGQPIFELRE 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + G++ SSNY LY DMS+R M L E +PRV YSIDEAF DLTG+ + DFG Sbjct: 68 YVEKHGLIVCSSNYALYGDMSHRFMLALAECAPRVMPYSIDEAFLDLTGIDSVVSYLDFG 127 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++ V T L + VGIA + TLAKLANHAAK T GVVDL++ +RQR+LM P Sbjct: 128 HHVKELVRIWTGLPICVGIAPSPTLAKLANHAAK-HYPATRGVVDLTDRDRQRRLMHLTP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL-QLEE 239 V++VWGIGR++SK+LDA+GIKT LDLAD+D ++IR HF+VV+ERTVREL G PC L E Sbjct: 187 VEEVWGIGRKLSKRLDALGIKTALDLADSDPKWIRDHFSVVVERTVRELNGIPCHSDLLE 246 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 AP KQ+I+CS+SFG +TD SM AI ++A+RA+EKLR E++ C +++ F+ TS F Sbjct: 247 VAPAKQQILCSKSFGAPVTDLNSMLAAITAHASRASEKLRRENRDCGYLAAFMSTSRFRT 306 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +Y N + L PT D+R+I+ A ++W+ G+RY KAG++L DF G Q + Sbjct: 307 -GSHYANQQGITLPFPTSDTREIVRHAVSIARSLWREGYRYNKAGIVLTDFRVPGACQSD 365 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-IQQQWQMKRAMLSPRYTTRSSDL 418 F + +LM +D +N+ G+ T+ F Q Q WQM+R LSP YTTR +D+ Sbjct: 366 FFSQVEDDERNRKLMRTLDKINSIAGKNTIQFGRQIHKNQSWQMRRENLSPAYTTRWADI 425 Query: 419 LRV 421 Sbjct: 426 PVA 428 >UniRef50_Q5N669 DNA polymerase V n=9 Tax=Bacteria RepID=Q5N669_SYNP6 Length = 418 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 195/421 (46%), Positives = 262/421 (62%), Gaps = 10/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L G+PVVVLSNNDGCVIAR+AEAKALG+ MG P+FK KD Sbjct: 1 MFALIDCNNFYVSCERVFDPKLQGQPVVVLSNNDGCVIARSAEAKALGIPMGIPFFKVKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + FSSNY LY DMS RVM TL L P +E+YSIDEAF D +G + G Sbjct: 61 LISQHQIQVFSSNYALYGDMSQRVMQTLATLCPDLEVYSIDEAFLDFSGFQAQ--PLQQG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + IR TV Q T + V +GIA TK LAK+AN AK+ GV LS + + ++ LP Sbjct: 119 QLIRQTVGQWTGIPVSIGIAATKVLAKVANKLAKQNG----GVFVLS-PSKVQAVLMTLP 173 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V++VWGI R ++L A+ I T +L T++ +R+ FN+VLER VRELRGE CL LE Sbjct: 174 VEEVWGISSRWGQRLRALNISTAAELQATNLNLMRQQFNIVLERIVRELRGESCLPLESI 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q ++ SRSFG+ IT P ++QA+ +Y +RAAE+LRS +++ F++T+ F Sbjct: 234 VNPQQSLVVSRSFGQPITTLPELKQAVATYVSRAAEELRSRQLTTSYLTVFVRTNRFQ-- 291 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y +AS LLTPT + ++ A R ++++Q G Y+KAGV+ S Q +L Sbjct: 292 ENYEAPNASQGLLTPTNHTGKLLEIALRCTESLYQPGRAYKKAGVLFQGLGSAQSIQQSL 351 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F++ + LM MD LN + GR +L++ G +Q W M+ SP+YTTR DL Sbjct: 352 FEE-SDSEKGAALMVTMDRLNRRYGRQSLHYGATGTRQPWAMRSDQRSPQYTTRWQDLPE 410 Query: 421 V 421 V Sbjct: 411 V 411 >UniRef50_B7JBK8 UmuC protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7JBK8_ACIF2 Length = 427 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 202/424 (47%), Positives = 257/424 (60%), Gaps = 6/424 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE VFRPDL G+PVVVLSNNDGCV+AR+AE KALGV MG PWF+ + L Sbjct: 3 IALVDANNFYVSCERVFRPDLEGRPVVVLSNNDGCVVARSAEVKALGVAMGTPWFQLQKL 62 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 RR G++ SSNY LYADMSNR+M L SP E+YSIDE F DL+G R L+ G+ Sbjct: 63 ARREGIIALSSNYSLYADMSNRMMGILSTFSPIQEVYSIDECFLDLSGFAQDR-LSQLGQ 121 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSAL 179 R V Q L VGVGIA TKTLAKLANH AKK GV QR L+ L Sbjct: 122 AARQRVRQWVGLPVGVGIAATKTLAKLANHVAKKRPEYA-GVCVWDDLPEGDQRHLLQQL 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +VWG+GR+ + +L GI+TV DL D +RK F++++ER++RELRGEPC+ + E Sbjct: 181 PVSEVWGVGRQWTTRLQETGIQTVWDLRQADPALMRKRFSILMERSIRELRGEPCIAMVE 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +QEI SRSFG +T + +AI Y RA KLR + + FI TSPF Sbjct: 241 IPPPRQEIQSSRSFGRPVTSAEELGEAISLYTVRAVYKLRRQGSVAGALRVFIHTSPFQA 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 P Y + +V L P+QD+R + A +L ++++G Y KAGV L + S Q + Sbjct: 301 RLPSYHATRTVALNRPSQDTRVFLQAGRIALADMYRSGFAYAKAGVHLLEITSADALQAD 360 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ--WQMKRAMLSPRYTTRSSD 417 LF + +LMT +D +NA+ G GTL G+Q+ W MKR SP YTTR ++ Sbjct: 361 LFLSAEEEARAHRLMTTLDRVNARFGTGTLQPGVAGLQEPRGWAMKRGNKSPAYTTRWAE 420 Query: 418 LLRV 421 L R Sbjct: 421 LARA 424 >UniRef50_B8FBE8 DNA polymerase IV n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=DPO4_DESAA Length = 396 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 167/400 (41%), Gaps = 18/400 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AFYAS E + P+L G+ V+V +N G V + + EA+ALGV+ P + Sbjct: 5 LIIHVDMDAFYASVELLDNPELRGQCVIVGGASNRGVVCSASYEARALGVRSAMPIVTAR 64 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L R V Y ++S +V + +P VE S+DEAF D+T + Sbjct: 65 KLCPRG--VFLPVRRARYQEISRKVFEIFHQYTPLVEPISLDEAFMDVTSSTRLFGSGEE 122 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 IR + +T GIA+ K +AK+A+ K + + ++ ++ + Sbjct: 123 IAANIRRQIESSLGITASAGIAKNKLVAKIASDLCKPNG------LLVVPADQTQEFLDP 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ +WG+G KL ++G+KT+ D+ + +F E RG +E Sbjct: 177 LPISRLWGVGPASRNKLISLGVKTIRDVRKLTQEMLSANFGRNGEVIYAFARGMDDRPVE 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I +F + + + + R A ++R E R ++ +K + F Sbjct: 237 P-PGAAKSIGREITFDRNVYTLEEAYKWMLFLSERVARRMRKEEATGRTVNIKVKYADF- 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-Q 357 + SV L +PT D +I A + L + GV L + G A Q Sbjct: 295 -----IQVTRSVTLESPTDDPGEIYTHAKKLLQKTLVGSKAVRLLGVTLSQLVTPGQAWQ 349 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 LFDD +L +D + + G GT+ A Sbjct: 350 PGLFDDPTASERKRKLNQALDGIWDRFGSGTVEPAALVTD 389 >UniRef50_C0QCD0 UmuC1 n=3 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCD0_DESAH Length = 422 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 177/423 (41%), Positives = 242/423 (57%), Gaps = 6/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF P L GKPV+VLSNNDGC +AR+ EAKALG+ MG P+F+ K Sbjct: 3 VFALVDCNNFYVSCERVFNPQLVGKPVIVLSNNDGCAVARSNEAKALGIAMGAPFFQIKA 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV FSSNY LY DMSNRVM TL +P +EIYSIDEAF DLT DL ++ Sbjct: 63 IVEGNGVRVFSSNYPLYGDMSNRVMQTLAPFTPAMEIYSIDEAFLDLTNF-AFTDLVNYA 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R TV + T + V +GIA TKTLAK+AN AKK + GV+DL+ + + P Sbjct: 122 RKMRNTVQRNTGIPVSIGIAPTKTLAKIANRIAKKSSKA-DGVLDLTPTSYRDLALEMTP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR++ GI+T LD IR + R REL GE C LE+ Sbjct: 181 IGDVWGIGRRLTPFFKYRGIRTALDFKSAAPSLIRGKMGINGIRMQRELAGESCYPLEDC 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ + SRSF T + + QA+ Y +R AEKLR + + ++ ++ T+ F+ Sbjct: 241 PARRKSVAVSRSFKTPATTFDELSQAVSLYISRGAEKLRHQGSFTETLTVYVMTNRFSP- 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + YY NS + L T + + ++I L I+Q+G Y KAG++ G QL+L Sbjct: 300 QSYYYNSKTAVLPTASNSTPELIKQGKGLLKQIFQSGKYYTKAGIVFSSLTRDGQVQLDL 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--QQQWQMKRAMLSPRYTTRSSDL 418 FD R S+ LM MD +NA+ G + +A G+ W+ + SP YTT + L Sbjct: 360 FD-TTDRSRSDNLMQAMDKINARMGSHAVRYAAMGLSGHPSWKGACSHRSPAYTTEWNQL 418 Query: 419 LRV 421 L + Sbjct: 419 LNI 421 >UniRef50_B0VH44 Protein umuC n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH44_9BACT Length = 429 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 192/422 (45%), Positives = 257/422 (60%), Gaps = 3/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + AL D N FY SCE VF P L KPV VLSNNDGC+++R+ E K L + MG P FK + Sbjct: 11 IVALVDCNNFYVSCERVFNPKLNNKPVAVLSNNDGCIVSRSQEIKDLKIPMGAPGFKYEG 70 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ G SSNY LYADMS+RVM L SP VEIYSIDEAF L G +N RDL +FG Sbjct: 71 LIKKHGGTLLSSNYALYADMSSRVMEVLALFSPEVEIYSIDEAFLGLNGFKN-RDLENFG 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++I+ TV Q T + V VGI+QTKTLAK+ANH AK++ G + L + ER K ++ P Sbjct: 130 KKIKRTVFQWTGIPVSVGISQTKTLAKVANHFAKRYSAFQGSLCLLDD-ERITKALAKTP 188 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR+ K L I+T L L D + +FI + V +TV ELRG C+ L+E Sbjct: 189 VSEVWGIGRQYDKFLRQHKIETALQLRDAEDKFIEHYLTSVGLKTVLELRGYACIDLDEA 248 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I+ SRSFG++++ +++AI Y RAAEKLR + + F+ T+ F Sbjct: 249 PANKKSIVTSRSFGKQVSSLNDLQEAISEYVTRAAEKLRKQKSVAGLLMVFLSTNRFK-E 307 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NS S L PT + ++I A LD ++ G ++KAGVML D + L+ Sbjct: 308 GPQYNNSLSTTLFPPTAYTPELIKTALNLLDDLYLPGFEFKKAGVMLADIIPEKDVPLSF 367 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 D N ++LM MD LN G+ TL++A GI++ W+MKRA LSP YTT +DL + Sbjct: 368 MDTNYLDDKRKKLMEAMDKLNRTYGQDTLFYASSGIKKDWKMKRAKLSPHYTTHWNDLPK 427 Query: 421 VK 422 VK Sbjct: 428 VK 429 >UniRef50_C0GDP3 DNA-directed DNA polymerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDP3_9FIRM Length = 395 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 99/408 (24%), Positives = 178/408 (43%), Gaps = 22/408 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+NAF+ASC P GKP++V + G ++ + EA+ GVK ++ Sbjct: 4 IIHVDMNAFFASCHQAQNPQWQGKPLLVAGDPQKRHGIILTASYEARKFGVKTAMAVWQA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD 118 K L + + S +++LY+ S R+M+ +E+ +P VE +SIDEA+ D+TG T+ Sbjct: 64 KKLCPQG--IYISPDHKLYSAYSKRIMAIMEDYTPLVEPFSIDEAWLDVTGSARLFGTTE 121 Query: 119 -FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 GR ++ +L T + VGI+ K LAK+A+ K + +++ Sbjct: 122 EIGRLLQQRILDETGIPCSVGISGNKFLAKMASERQKPQG------FTILWPRDVPEVLW 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV+++ G+GR+++ L MGI+T+ +LA +R + F V E G + Sbjct: 176 PLPVEEMVGVGRKMAPALHEMGIETIGELAAMPLRLLVSRFGVAGESLHHLANGRDDSPV 235 Query: 238 EEFA-PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + T + + S + I D + + + + + +LR R ++ +K Sbjct: 236 DPTVFDTVKSVGNSLTLPRDINDPEDVARVLLKLSEKVGRRLRQSGNVARTVTLTVKDQN 295 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGV 355 F + S L PT + I A ++ + + GV + + G Sbjct: 296 F------VSVTRSRTLHEPTGFTDVIYKTAVDIHQKQFEPWRKVRLLGVSVSNLLPADGG 349 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 QL+LF + E L V D + + G + A +++ K Sbjct: 350 VQLSLFGASE--ERMENLTRVTDRIRDRYGDTVIGRARLCKEKETPPK 395 >UniRef50_D2QVG5 DNA-directed DNA polymerase n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVG5_9SPHI Length = 422 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 173/423 (40%), Positives = 246/423 (58%), Gaps = 3/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL D N FY SCE F P L G+PVVVLSNNDG ++AR+ E K L V MG P+F+ + Sbjct: 1 MIALADCNNFYVSCERSFNPSLNGQPVVVLSNNDGSIVARSNEVKKLNVGMGQPFFEIER 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDF 119 L + G+ FSSNY LY MS RVM+ VE+YSIDEAF DL G + DLT F Sbjct: 61 LRQEHGIHVFSSNYVLYGSMSARVMAIFGRFVEDVEVYSIDEAFFDLNGYESIYPDLTTF 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +R+TV+Q T + + +GIA TKTLAK+AN K Q GV LS E+ R+ + L Sbjct: 121 AHNLRSTVMQWTRIPISIGIAPTKTLAKVAN-WYAKRQPDASGVCMLSTPEQIRQALEQL 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 VD++WGIGRR + L GIKT L+ + +++KHF + R V ELRGE C +E Sbjct: 180 SVDELWGIGRRYASFLKQNGIKTALEFSQCHDVWVQKHFTINGLRLVYELRGEVCRTVET 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + + SFGE + D P++ +A+ +Y ARA+EKLR + ++ F+ T+ F Sbjct: 240 QPSARKSVCVAPSFGELVGDRPTLYEALTNYVARASEKLRKQRLAAGAMTVFLHTNRFRA 299 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 Y NS S L PT ++ + A ++LD+I+++G+ YQK G++L + Sbjct: 300 AVGQYSNSRSFTLPVPTNLIPELSHYAIKALDSIYKSGYAYQKVGLILSALQPDTHQTPD 359 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 +F + P +L+ ++ LN+K GR + FA QG W+MK+ LSP YTT D++ Sbjct: 360 VF-EGELDPRLLKLLPTVERLNSKLGRDKVRFAAQGFNHLWKMKQRWLSPCYTTHWKDII 418 Query: 420 RVK 422 K Sbjct: 419 ITK 421 >UniRef50_Q0VP68 DNA-damage-inducible protein n=4 Tax=Proteobacteria RepID=Q0VP68_ALCBS Length = 428 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 206/431 (47%), Positives = 276/431 (64%), Gaps = 12/431 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FYA+CE +FRPDL G+PVVVLSNNDGC++A +AEAKALGVK G P F+ D Sbjct: 1 MFALVDCNSFYAACERLFRPDLQGRPVVVLSNNDGCIVAGSAEAKALGVKTGMPLFQAHD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R V FSSNY LY D+S RVM+TLE L+PRVE YSIDEAF D++ + +L Sbjct: 61 LIRGHKVAVFSSNYALYGDISQRVMATLETLAPRVEAYSIDEAFLDVS-LMKTAELQPLA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +IRA + + + V VG+A TK LAKLANHAAK++ TGGVV LS+ R+ KL+S P Sbjct: 120 LQIRARIDRWVGVPVCVGVAPTKVLAKLANHAAKRY-PATGGVVVLSDPLRRDKLLSLTP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + VWG+GRR+ + +A+GI T LDLA D+ IR+ F+VV ER VREL GEPCL L+ Sbjct: 179 ISQVWGVGRRLRGRFEALGINTALDLARADVGMIRQRFSVVQERLVRELNGEPCLSLDTQ 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q++I SRSFGE + P +RQA+ + +RA E LR E Y ++ +++T+P Sbjct: 239 PSPRQQVIYSRSFGEPVAALPPLRQALSDFVSRAMESLRKEGLYAGRVTVYLRTAPMGKP 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + ++ S L T D+R ++ A L +W G+RY KAGV+L D + Q L Sbjct: 299 QQLFPDTLSAVLSPATADTRLVVRQAQALLAQLWWPGYRYGKAGVILTDLRGRDQVQCGL 358 Query: 361 FDDNAPRPGS-----EQLMTVMDTLNAKEGRGTLYFAGQGIQQQ----WQMKRAMLSPRY 411 F + P E LM VMD++N G G ++ AG+G+Q W M+RA LSP Y Sbjct: 359 FAEQKPAEQETGRRGEALMAVMDSINQS-GVGKVWLAGRGMQGNQHSTWAMRRAHLSPAY 417 Query: 412 TTRSSDLLRVK 422 T+R SDL V+ Sbjct: 418 TSRWSDLPVVR 428 >UniRef50_Q11V03 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=5 Tax=Bacteroidetes RepID=Q11V03_CYTH3 Length = 420 Score = 436 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 174/422 (41%), Positives = 249/422 (59%), Gaps = 2/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N FYASCE VF P L GKP+VVLSNNDGCVIAR+ EAKALG+ MG +F ++ Sbjct: 1 MYALIDCNNFYASCERVFNPSLNGKPIVVLSNNDGCVIARSNEAKALGIDMGGAYFMIEE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 ++ V FSSNY LY DMS RVM+TL E +P +E+YSIDE+F + G DL +G Sbjct: 61 ALKKHNVFVFSSNYTLYGDMSQRVMNTLAEFTPEIEVYSIDESFLNFEGFELLGDLKIYG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV + T + V +GIA TK LAKL+N AKK ++ V L + E+ + Sbjct: 121 TTIRNTVFRNTGIPVSIGIAPTKALAKLSNRIAKKN-KEYNHVCVLDSQEKIMAALKITT 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VD++WGIGR L GI+T D ++RK+ +VV R +EL+GE CL+LE Sbjct: 180 VDNIWGIGRAYHNFLLNHGIQTTYDFVQQPEEWVRKNMSVVGLRLHKELKGEKCLELELV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A KQ I SRSFG +TD +++A+ ++A+R A KLR + C + + T+ + Sbjct: 240 AMAKQNICTSRSFGRYLTDIDPIKEAMSNFASRCALKLRKDKSVCTLVQILLHTNKHKPD 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 +P Y + + L PT + ++I A+ R+LD +++ G+RY K GV++ + Q NL Sbjct: 300 QPQYFVNKVITLPVPTNSTIELIQASLRALDLVYKPGYRYMKCGVIVSGIVPEDRVQQNL 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FD R ++ T+MD LN G + G+ +QW +K LS Y+TR +++ Sbjct: 360 FDTVD-RSKHNKVTTIMDKLNKSLGADFVKVGSLGVTKQWHLKAEKLSQCYSTRWDEIIV 418 Query: 421 VK 422 +K Sbjct: 419 IK 420 >UniRef50_A1BFA1 DNA-directed DNA polymerase n=7 Tax=Chlorobiaceae RepID=A1BFA1_CHLPD Length = 426 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 174/427 (40%), Positives = 247/427 (57%), Gaps = 9/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L +PVVVLSNNDGC IAR+ EAKA+G+ MGDP +K ++ Sbjct: 1 MFALVDCNNFYVSCERVFNPGLQNRPVVVLSNNDGCFIARSEEAKAIGLAMGDPAYKNRE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R+ V +S+N+ LY DMS RVM TLE L+P +EIYSIDE F DL G +L D+ Sbjct: 61 LLRQHNVAVYSANFPLYGDMSARVMKTLETLAPDLEIYSIDECFLDLGGFGKF-NLADYA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R TV + T + V +GI TKT+AK AN AKK GGV LS R+ + A+ Sbjct: 120 AATRKTVHRNTGIPVSIGIGATKTIAKAANRMAKKN-LSLGGVCILSTAAATREALGAMA 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ +WGIG + + L I T LD AD +++KH ++ R +EL G CL LE Sbjct: 179 VEHIWGIGSQYAALLHKQHIHTALDFADAPTHWVQKHLHITGARVQQELNGHSCLPLELV 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I SRSFG ++ Y + AI + + A KLR E ++ F+ TSPF Sbjct: 239 RSRKQSICTSRSFGSLVSSYEEIGYAIAHFTSTCAFKLRREGSRASLLTVFLYTSPFIEK 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA---Q 357 E Y + + L P+ ++ ++ AA L +I+++G+ Y+KAGV++ + A Sbjct: 299 ENRYRGTRTFALPFPSNNTLELQKAAQLLLASIYRSGYGYKKAGVLVSGITDEKGAAMTT 358 Query: 358 LNLFDDNAPRPGSEQ---LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 L+LFD++ ++ LM +D +N++ G+GTL A W+ ++ LSP YTTR Sbjct: 359 LSLFDNDPLPRNQKRDMKLMETLDAINSRFGQGTLRTASD-TNSGWKQRQEKLSPHYTTR 417 Query: 415 SSDLLRV 421 +D++ + Sbjct: 418 WNDIIEI 424 >UniRef50_Q39ZU3 Damage-inducible protein DinP n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q39ZU3_PELCD Length = 399 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 104/407 (25%), Positives = 169/407 (41%), Gaps = 19/407 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AFYAS E + P+L G+PVVV + G V A + EA+ G+ P + Sbjct: 10 IILHLDMDAFYASVEQLDSPELKGQPVVVGGHRSRGVVCACSYEARTFGIHSAMPMSRAL 69 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + + Y ++S +V + VE S+DEAF D+T R + D Sbjct: 70 RLCPQA--IVQPVRMARYQEISRQVFDIFGRYTDLVEPLSVDEAFLDVTASRRLFGEGWD 127 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +IR V L + GIA K LAKLA+ AK ER + + Sbjct: 128 IAEKIRRDVRDELGLPISAGIAPNKFLAKLASEQAKPDGVFQV-------PERVDDFLLS 180 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ +WG+G + K L MG++TV DL D + + F ER ++ GE +E Sbjct: 181 LPLKRLWGVGPVLLKSLQKMGLRTVADLRHMDRADMERCFGQAGERLIQLAHGEDERPVE 240 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I +F + I + +M A+ R A +LR ++ +K + F+ Sbjct: 241 PQRSL-KSIGHEDTFDQDIFERETMHVALLDLVERVAARLRKHGLIGTTLTLKVKYADFS 299 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + S + +RD+++ A + L+ + GV L + Q Sbjct: 300 ------TVTRSRSVADGICHARDMLHLAKQLLEKTEAGKKPVRLLGVSLANLMDADSGQG 353 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 LFD+ R + L MD + + G L A ++ + R Sbjct: 354 LLFDE-DRRNQLKGLEQAMDHVRERYGEKGLCRATLVGHRRRSLTRE 399 >UniRef50_Q5ZUT9 SOS mutagenesis and repair UmuC protein n=12 Tax=Legionellaceae RepID=Q5ZUT9_LEGPH Length = 431 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 204/423 (48%), Positives = 266/423 (62%), Gaps = 9/423 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE +F+P L KP++VLSNNDGCVIAR+ E KALGV+MG P+F K Sbjct: 14 MFALVDCNNFYVSCERLFKPALANKPILVLSNNDGCVIARSNEVKALGVQMGVPYFAVKA 73 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V FSSNY LYADMS RVMS LE+ P +EIYSIDEAF DL + +F Sbjct: 74 LCKQHKVHVFSSNYTLYADMSRRVMSVLEDNWPAIEIYSIDEAFLDLNTLPQSEH-DEFC 132 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ VL+ T + V +GI TKTLAKLANH AKK R + N+E Q ++ + Sbjct: 133 RKLQKIVLRHTGIPVSIGIGATKTLAKLANHIAKKELRTP-----VFNIENQYHWLAKIV 187 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR+ KKL GI T DLA D++ I+K F+VVL+RTV ELRG C L++F Sbjct: 188 VGEVWGIGRQWGKKLVQQGIYTAHDLAGMDLQLIKKLFSVVLQRTVLELRGVSCGSLQDF 247 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K II S+SFG T+Y ++ QAI S+ ARA EKLR + +S FIKT+ F L+ Sbjct: 248 ESRK-SIISSKSFGSMQTEYSALAQAISSHCARAWEKLRHQKLMACHLSIFIKTNQFRLD 306 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y + KL+ PT D R +I A L I+++G YQK GV LGD + QL+L Sbjct: 307 LPQYQQTIGFKLINPTDDLRHLIRCAKLCLRKIFRSGFHYQKVGVYLGDLIEKNCLQLDL 366 Query: 361 FDDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 F+ + + +E+LM+V+D +N K GR TL A +G + W M+ SPRYTT S+L Sbjct: 367 FNQVSEKELNQTERLMSVLDEINTKYGRHTLRLAAEGHVKPWAMRAQSRSPRYTTSWSEL 426 Query: 419 LRV 421 V Sbjct: 427 PVV 429 >UniRef50_Q3ABL2 DNA polymerase IV n=4 Tax=Firmicutes RepID=DPO4_CARHZ Length = 391 Score = 433 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 167/396 (42%), Gaps = 22/396 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AF+A+ E P+L GKPV+V G V A + EA+ GV+ ++ Sbjct: 5 VIIHVDMDAFFAAVEQRDNPELKGKPVIVGGVPGERGVVAAASYEARKFGVRSAMSLWEA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-T 117 L + N++ Y ++S ++ E +P VE S+DEA+ D+TG + Sbjct: 65 ARLCPHG--IFIPGNHKKYQEVSEKIFRIFREYTPLVEPVSLDEAYLDVTGSQKLFGPGA 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + G++I+ + + T LT VG+A K LAKLA+ K + ++ Sbjct: 123 EIGKKIKKRIFEETELTASVGVAPNKFLAKLASEVNKPDG------FCEVREDNVLDFLA 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV+ +WG+G ++ ++L+ MGIKTV D + F+RK F V+ + RG ++ Sbjct: 177 PLPVEMLWGVGEKMKERLNDMGIKTVQDFWELPEFFLRKKFGVLGQNLYYLSRGIDFREV 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + + +D + + LR E Y IS I+ S F Sbjct: 237 IPERVP-KSLGKEITLQKDSSDVDYLLGKLLGLTMAVGRGLRREGFYAGGISVKIRLSSF 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVA 356 + + PT + A R + + GV G Sbjct: 296 ------ITYTRHSRFFEPTWMDDVLYREAKRLFLENYHGELPVRLVGVTATPLVPVGGGR 349 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 Q++LF + E L ++D LN K G T+ A Sbjct: 350 QISLFGE---DLRRENLYPIIDRLNHKYGNKTVTRA 382 >UniRef50_C6CYA7 DNA-directed DNA polymerase n=3 Tax=Bacillales RepID=C6CYA7_PAESJ Length = 422 Score = 432 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 163/413 (39%), Gaps = 21/413 (5%) Query: 1 MFALCDVNAFYASCETVFRPD-LWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWF 56 + D+NAFY S P+ GKP V + G ++ + A++ G+K G Sbjct: 14 VILHLDMNAFYCSVHEAEEPEKYKGKPTAVAGSVELRKGIIVTCSYAARSKGIKTGMTVR 73 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL 116 + + ++ ++ELY S M E +P VE SIDE + D+TG + Sbjct: 74 QAMRMCP--NLIIIQPDFELYRKYSRGFMKIAREYTPLVEPISIDECYMDITGSKIFGSP 131 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + ++ + + L +G+A K LAK+A+ K + + L ++ Sbjct: 132 LEIAEALQKRIAEEWTLPCSIGVAPNKLLAKMASDMKKPNG------LTVLRLRDVPTIL 185 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 P D + G+G++ + KL+ + I+T+ LA D + + F + G + Sbjct: 186 WDKPCDVLHGLGKKTADKLERLRIRTIGQLAAADEELLIRQFGIYGSWMKSAAHGIDHSE 245 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + I + + +TD + + + A + A +LR + + I+ Sbjct: 246 VRADREQSKSIGHTTTLPYDVTDREDAHRILLNLADQTARRLRRQKLMASTVQITIRKPD 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-- 354 A + S L PT + I + A R D W+ + GV L + ++ Sbjct: 306 MA------TITRSSTLRAPTHSTDMIYHEACRLFDEHWKGSEPARLLGVTLQNLTAEEET 359 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QL+LFD +P E L MD L K G + AG + R Sbjct: 360 AVQLDLFD-YKEQPRKEALTKTMDVLRDKFGENAVLTAGMLGDDPSVLIRNKR 411 >UniRef50_C6M791 Protein UmuC n=2 Tax=Neisseria RepID=C6M791_NEISI Length = 423 Score = 432 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 180/423 (42%), Positives = 246/423 (58%), Gaps = 9/423 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY SCE VFRP+L PVVVLSNNDGCV+AR+AEAKALG+KMG+P+F+ K Sbjct: 8 MFALIDGNSFYCSCERVFRPELKNVPVVVLSNNDGCVVARSAEAKALGIKMGEPYFRVKH 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + FSSNYELYAD+S R+M T+ P VEIYSIDE F + N D G Sbjct: 68 LVSQGRLKAFSSNYELYADLSRRMMETIAGCVPAVEIYSIDECF---ATMANIGDHAGLG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSN--LERQRKLMSA 178 REIR VLQ + VGIA TKTLAK N+ AKK+ GGVV ++ + + + + Sbjct: 125 REIRRRVLQWVGIPTCVGIAPTKTLAKFCNYLAKKYPSHFGGVVVWTDWTESIRLRALRS 184 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 V ++WGIG +I+ KL A GI T LD D +R + V +ERT RE++G C L Sbjct: 185 EAVSEIWGIGNKIAAKLAAQGIFTALDFVLADTATLRLRYGVTIERTQREMQGIVCDGLH 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 KQ ++ SRSFG RI +++ AI + + AE LR + +S F+ T F Sbjct: 245 PKPAPKQNLVRSRSFGVRIDTLDALQAAITHHISSGAETLRKDKLTASSVSVFLHTDFFK 304 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 +EP Y NS ++ L+ PT D+ + +AA + L I+++G+ Y+K G+ L Q Sbjct: 305 ESEPQYHNSQTISLIVPTSDTVLLNHAAQKILATIFRSGYLYKKCGIELHGLKPAEQIQA 364 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +L+ P +M D +N + G+G L A + + W+M R LS YTTR +DL Sbjct: 365 DLWQSVTNNP----VMEAWDKINRQYGKGRLKLASELLANNWEMNRDRLSQCYTTRFTDL 420 Query: 419 LRV 421 V Sbjct: 421 PIV 423 >UniRef50_C8X192 DNA-directed DNA polymerase n=2 Tax=Deltaproteobacteria RepID=C8X192_DESRD Length = 437 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 178/423 (42%), Positives = 237/423 (56%), Gaps = 5/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N FY SCE VF P L G+PVVVLSNNDGC+IAR+ EAK LG+ MG+P+ K++ Sbjct: 17 VYALVDCNNFYVSCERVFAPRLQGRPVVVLSNNDGCIIARSEEAKTLGIAMGEPFHKREP 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR GV FSSNY LY DMS RVM L +P EIYSIDE F + DL Sbjct: 77 FLRREGVNVFSSNYPLYGDMSARVMEALSRFTPHQEIYSIDECFLGFVPAPDA-DLLCTA 135 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR TV Q T + V VG+A TKTLAK+AN AKK + V L + + ++ Sbjct: 136 RHIRETVRQWTGIPVSVGLAPTKTLAKIANRCAKKD-PASKNVCLLGDTTTIEQTLARTD 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+D+WGIGRR ++ L G+ T LDL ++R H VV +TV EL +PC LE Sbjct: 195 VEDIWGIGRRYARFLHTRGVDTGLDLVRMPRDWVRNHLTVVGLQTVLELDRQPCFVLETT 254 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I+CSRSFG RI D ++ +A+ + RAAE+LR++ + ++T+ F Sbjct: 255 PAPAKSIVCSRSFGRRIRDKQALGEALARHIQRAAERLRAKGLLAHTVRVALETNRFQP- 313 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y LL PT + + AA LD ++++G YQK GV L + Q +L Sbjct: 314 GPQYAARRCQTLLHPTDATPALHKAAQGLLDVLYRSGFAYQKIGVTLLELVPHNHRQASL 373 Query: 361 FDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDL 418 F A LM +D LN GR T+ +A G+ QQW M++ +SPRYTT +L Sbjct: 374 FPPAAAETGRQRDLMRTVDHLNTVYGRDTVTWAASGLGPQQWHMRQNHVSPRYTTAWDEL 433 Query: 419 LRV 421 V Sbjct: 434 PCV 436 >UniRef50_Q0AX85 DNA-directed DNA polymerase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX85_SYNWW Length = 393 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 103/402 (25%), Positives = 166/402 (41%), Gaps = 21/402 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 CD++AF+AS E + P L GKPVVV + + G V + EA+ G++ P + Sbjct: 7 ILHCDLDAFFASVEQLDNPSLRGKPVVVGGSMHSRGVVSTCSYEARKFGIRSAMPIAQAY 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + V N Y ++S +V S L SP EI SIDEAF D++G + Sbjct: 67 RLCPQA--VFLPVNMPRYLEISKQVFSILSRYSPIKEIISIDEAFLDISGCSSLYGSPEK 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G I V LT+ VGI+ K LAKLA+ K + + +L+ Sbjct: 125 IGCLINEQVYSELGLTISVGISYNKFLAKLASDMDKPNG------LRIITESEALELLRP 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV +WGIG++ + LD +GIKT+ D+ D+ ++ G +E Sbjct: 179 LPVSRIWGIGQKTEQSLDKLGIKTIGDIQDSPPEWLEDKIGSAGRLFWELAHGIDRRAVE 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + +F E I D + + I +AA KLR E + I+ ++ S F Sbjct: 239 PEH-ERKSLGREETFPEDINDTAYLEKLIVQFAAELCRKLRQEALFAATITIKLRYSNFK 297 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-AQ 357 + S + P + A+ L + + G+ LG Q Sbjct: 298 ------TITRSKTI-NPCNSDIIVTQIASELLHHSYNNKQPLRLFGLSLGQLSPAASLEQ 350 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 +LF + + + +MD + + G G + A + Sbjct: 351 GSLF-EPQSNADYKSIDRLMDEIRDRFGPGAIKRANLLPNKD 391 >UniRef50_Q11QJ9 Nucleotidyltransferase/DNA polymerase involved in DNA repair/SOS mutagenesis and repair n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QJ9_CYTH3 Length = 419 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 179/422 (42%), Positives = 248/422 (58%), Gaps = 9/422 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N FY SCE VFRPDL +PVVVLSNNDGCVI+R+ EAKA+GVKMG+P+FK K+ Sbjct: 1 MYALIDCNCFYVSCERVFRPDLRQQPVVVLSNNDGCVISRSDEAKAIGVKMGEPFFKMKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R V FSSNY LY D+S+RVM TL + P +E+YSIDEAF L DL G Sbjct: 61 LVRNGKVTAFSSNYTLYGDLSDRVMKTLASIVPDIEVYSIDEAFLHLNESHT--DLETLG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV Q T + VGVGIA TKTLAKLAN +KK G V + + ++ ++A Sbjct: 119 HTIRNTVKQHTGIPVGVGIAPTKTLAKLANRLSKK-----TGGVHIIYPDNIQEKLNACA 173 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR +K+L A + T+ + ++R+HF+V+ RT +EL+G PC+ +E+ Sbjct: 174 LQDVWGIGRRNAKRLQANYVDTIEQFVNQREEWVRQHFSVIGLRTYKELKGIPCIDMEDE 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSFGE + S+++AI ++AA AEKLR + + + S F Sbjct: 234 LTEKKSICTSRSFGELQNTFASIQEAIATHAASCAEKLRKQKCAAAGMYVSLSKSRFTDQ 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +KL T ++ +I A++ L+ +++ Y+K GV + D + QLNL Sbjct: 294 EGDKYFGTYIKLPQATNNTATLIQYASKGLELLFKKDVYYKKCGVTVIDIVPEEKIQLNL 353 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAMLSPRYTTRSSDLL 419 F + L +D LN K G+ L A QG W+++ +SP YTTR ++L Sbjct: 354 F-EPQKNARLHALEDTIDKLNQKLGKNVLRQAIQGNDNNTWKLRCENMSPNYTTRIGEIL 412 Query: 420 RV 421 V Sbjct: 413 VV 414 >UniRef50_A9E9W4 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Kordia algicida OT-1 RepID=A9E9W4_9FLAO Length = 421 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 176/421 (41%), Positives = 255/421 (60%), Gaps = 4/421 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL DVN Y SCE VF P L GKPVVVLSNNDGCVI+R+ EAK LG+ MG + Sbjct: 1 MYALVDVNNMYCSCERVFNPKLIGKPVVVLSNNDGCVISRSNEAKKLGIPMGAVTHLFEK 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +F+ V +SSNYELY D+S+R+M L + +P +E+YSIDEAF G + DL D G Sbjct: 61 IFKDHHVQVYSSNYELYGDLSDRLMHVLSKFTPDIEVYSIDEAFLQFKGFEHF-DLNDLG 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EI+ T+LQ L + +GIA TK LAK+AN AKK+ ++TGGV + + +++K ++ L Sbjct: 120 IEIKETILQYIGLPISIGIAPTKALAKVANRIAKKFDKKTGGVYVMDSEHKRKKALNWLS 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGRR + KL+ GI + AD ++RK F+VV R ++L+G P L LEE Sbjct: 180 IEDVWGIGRRNASKLNRYGITKAIQFADAPDNWVRKEFSVVGLRLKKDLQGIPTLSLEEV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +K+ I +RSF + + +++ I SY A+EKLR + C I F+ ++ F + Sbjct: 240 -ESKKSIAVTRSFAKTKNNLQDLKEIIASYGCVASEKLRVQKSCCNLIMVFVHSNRFRKD 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NS VKL T S I A +++ +I++ G+ ++KAG+M+ QLN+ Sbjct: 299 LPQYNNSLVVKLPYSTNSSLIIAKYAKKAIQSIFKKGYEFKKAGIMVMGLVPDNAQQLNM 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+ QLM+ +D LN+K G+ TL A Q + W M++ LS YTT +D+L Sbjct: 359 FEACNSDHK--QLMSTIDRLNSKYGKNTLNIASQKLDSSWAMRQNNLSQNYTTDFNDILV 416 Query: 421 V 421 + Sbjct: 417 L 417 >UniRef50_C6XDV2 DNA-directed DNA polymerase n=2 Tax=Methylovorus sp. SIP3-4 RepID=C6XDV2_METSD Length = 430 Score = 429 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 201/425 (47%), Positives = 270/425 (63%), Gaps = 7/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL-GVKMGDPWFKQK 59 +FAL D N+FYASCE VFRPDL GKPVVVLSNNDGCV+A++ EAKAL + M PWF+ + Sbjct: 10 VFALADANSFYASCEKVFRPDLEGKPVVVLSNNDGCVVAQSKEAKALLKLWMCRPWFEIE 69 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 + R GVV FSSNYELYA+MSNR M+TL + SPR E+YSIDE+F ++TG+ +LTD+ Sbjct: 70 EEALRLGVVPFSSNYELYANMSNRFMTTLRQFSPRQEVYSIDESFLEMTGINR--NLTDY 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMS 177 G+EI+ TV T L + VG +KTLAKLANH AKK Q Q GV DL+ + ++ Sbjct: 128 GQEIKRTVKDWTGLPICVGFGHSKTLAKLANHCAKK-QPQWEGVCDLTALSERELEAILE 186 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPVD VWG+GRR+ L +G++ VL L D + +R F VVLERTVREL GE +++ Sbjct: 187 QLPVDTVWGVGRRLQASLATVGVENVLRLKRADPKRVRDKFGVVLERTVRELNGEVLIEM 246 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 EE P ++++ SRSFG R+ + +AI +A+ A+++LRS+ Y + FI+ SPF Sbjct: 247 EEMVPEAKQVMSSRSFGARVHQLKDLEEAISYHASNASQRLRSKGLYANAVYIFIQNSPF 306 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 E YYG S +V L PT ++ I AA L I++ G YQKAGVML + Q Sbjct: 307 DKAE-YYGPSCTVALPCPTDNTLQINKAALWLLKRIYRPGIYYQKAGVMLMGLVPKEGQQ 365 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 L + P S+ LM +D +N K +G L A +G+ + W M+R SP YT + Sbjct: 366 QELLGYSEATPKSQALMETLDRINHKYSKGALKVASEGMAKLWAMRRNFKSPNYTGDWEE 425 Query: 418 LLRVK 422 L +VK Sbjct: 426 LGKVK 430 >UniRef50_Q2W5K5 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=6 Tax=Proteobacteria RepID=Q2W5K5_MAGSA Length = 425 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 175/424 (41%), Positives = 241/424 (56%), Gaps = 4/424 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N FY SCE F P L GKPV+V+SNNDGC +AR+AEAKA+GV MG+P FK + Sbjct: 3 VYALVDCNNFYVSCERAFNPALEGKPVIVMSNNDGCAVARSAEAKAIGVGMGEPAFKLRH 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L G++ SSNY LY DMS RVMS L SP EIYSIDE F DL G+ +LT + Sbjct: 63 LVDSHGLIMLSSNYALYGDMSERVMSVLATFSPGAEIYSIDECFLDLDGMP-VDNLTAWS 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS-NLERQRKLMSAL 179 +++RATV + T + V VGI TKTLAKLAN AKK ++ GV+DLS + + Sbjct: 122 QQVRATVRRWTGIPVSVGIGTTKTLAKLANRLAKK-SKKANGVLDLSRDARWIEAALKQT 180 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV DVWGIGR+ + GI+T DL +I+K V RTV ELRG P L+ Sbjct: 181 PVGDVWGIGRQYAALCGVNGIRTAFDLTLQPDGWIKKTMGAVGLRTVMELRGTPVHTLDT 240 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K CSRSFG +T++ + A+ ++A+RAAEK+R E + F T F Sbjct: 241 APSDKHTTCCSRSFGASVTEFEQVHDAVMTFASRAAEKIRGEGLVSGAVQVFAYTDRFRP 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++P + ++ ++L PT + II AA + L + W+ G+ Y+KAGV++ D + Sbjct: 301 DQPQFSLNSMIRLSPPTSSTPHIIGAALKGLKSAWRDGYEYKKAGVIMLDLVRPEDIPRD 360 Query: 360 LFDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 LF LM +D +N K G+G + F W+M+ + +P +TT D+ Sbjct: 361 LFSPPPESGARPTALMAAVDGINGKMGKGAVGFGLVPDDAPWKMRCSNRTPSFTTSWDDI 420 Query: 419 LRVK 422 VK Sbjct: 421 PVVK 424 >UniRef50_A6ET82 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=4 Tax=Bacteroidetes RepID=A6ET82_9BACT Length = 421 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 178/424 (41%), Positives = 258/424 (60%), Gaps = 5/424 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKAL-GVKMGDPWFKQK 59 M AL D N+FYASCE VFRPDLWGKPVVVLSNNDGC+IA N EAKAL + M +P FK K Sbjct: 1 MIALVDCNSFYASCEQVFRPDLWGKPVVVLSNNDGCIIAANREAKALTDIAMFEPVFKIK 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 V FSSNY LY ++S RVM+TL SPRVE+YSIDE+F DL G + ++L + Sbjct: 61 KQLIAHNVTLFSSNYTLYGELSQRVMNTLYLFSPRVEVYSIDESFVDLHGFGH-KNLKHY 119 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G I+ T+ + T + GVGIA TK LAKLAN AKK + V + + ++ +++ Sbjct: 120 GNFIKETIFRNTGIPTGVGIAPTKVLAKLANKIAKK-GPEHDHVFVIDSDAKRIEILKTT 178 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + +WGIGR+ +KKL +GI T + + ++RK VV ER RELRGEPC+ + E Sbjct: 179 EIKSIWGIGRQQTKKLKEVGIHTAYQFTEMPLAWVRKEMTVVGERLWRELRGEPCMDMIE 238 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K+ I ++SFG ++ + +A Y + AE LR++ ++ F+ TS F++ Sbjct: 239 IPKPKKGIGTAKSFGRKLERLDLIEEACAYYISEVAEVLRAQKSCAMYLQVFLNTSSFSV 298 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 N+ Y N +V L PT ++ ++ A + L AI++ G+RY+K GV L + Q N Sbjct: 299 NDKQYRNKQTVTLAIPTNNTFTLVTEARKILKAIYKPGYRYKKVGVNLTGIIPEAYVQGN 358 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ-QQWQMKRAMLSPRYTTRSSDL 418 LF+ ++LM + DTLN K G+G ++ G + ++W++ +A SPR+TT+ S++ Sbjct: 359 LFESP-KTEKHKELMQLFDTLNYKYGKGKVFSGLTGTRMKEWELVKADRSPRFTTQWSEI 417 Query: 419 LRVK 422 L VK Sbjct: 418 LEVK 421 >UniRef50_C3X802 DNA-directed DNA polymerase n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3X802_OXAFO Length = 420 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 175/420 (41%), Positives = 258/420 (61%), Gaps = 9/420 (2%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N F+ SCE VFRPDL GKPV+VLS+NDGC IAR+ EAKALG++MG+PWFK KDL Sbjct: 6 ALVDCNNFFVSCERVFRPDLEGKPVIVLSSNDGCAIARSNEAKALGIRMGEPWFKVKDLP 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 + VV FSSN+ LY+D+SNRV L + SP E+YS+DE+F DLTG D+ + Sbjct: 66 KYRDVVVFSSNFPLYSDLSNRVKYLLADFSPVQEVYSVDESFLDLTGFD---DVKERMVA 122 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGV-VDLSNLERQRKLMSALPV 181 IR TV +R + V VG+ TKTLAKLAN+ AKK R G ++ +++ L+ +P+ Sbjct: 123 IRETVAKRIGIPVCVGVGPTKTLAKLANYVAKKHPRSKGVFHYNVLTEQQKSGLLKQIPI 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D+VWG+GRR+++ L + GI+TV L + DIR +R + VV+ER + ELRG C+ + + + Sbjct: 183 DEVWGVGRRLNRSLISRGIETVYQLREADIRTMRSRYGVVMERLISELRGISCIDMVDVS 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 P K++I+ SRSFG IT+ + AI +A + ++LR +H + F+ T F ++ Sbjct: 243 PPKKQILSSRSFGGVITEIDDLENAIAFHATKIGKQLRRQHSIAGMVHVFLMTDRFRKDK 302 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y S+ L+ T + +I A L I++ G+ Y+KAG + + + V ++F Sbjct: 303 PQYHPHVSLPLIDATNSTIEINRYAMMGLHRIFRPGYEYRKAGACVSELSPESVFSPDMF 362 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA-GQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 D P ++M VMD +N + G GTL + + ++W+ K +SPRYTT +L Sbjct: 363 TD----PKRRKIMQVMDEINDRFGNGTLRLSQDDMMHRRWRPKVDRVSPRYTTSWDELAE 418 >UniRef50_B4YK21 TumC n=1 Tax=Tetrathiobacter kashmirensis RepID=B4YK21_9BURK Length = 438 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 191/425 (44%), Positives = 258/425 (60%), Gaps = 9/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 + L D N FY SCE VFRP L GK ++ LSNNDGCVI+R EAKA+G+KMG PWF+ K L Sbjct: 18 YGLIDGNCFYCSCERVFRPFLKGKALISLSNNDGCVISRTDEAKAMGIKMGQPWFEIKHL 77 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 G++ SSN+ LY DMS+R+MS + SPR EIYSIDE+F D +G+ DL+ + + Sbjct: 78 -EEKGLMALSSNFALYGDMSDRMMSVISRFSPRQEIYSIDESFADFSGIT--EDLSAYSQ 134 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 +IRA VL+ T + VGI TKTLAKLANH AKK Q GV DL+ L+R + +M + Sbjct: 135 KIRAAVLRETGIPTCVGIGATKTLAKLANHIAKK-QPSWSGVCDLTQLDRYQLADIMKNI 193 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +VWGIGRRI+K+L+ +GI TV DLA R F++V+ +TV+ELRG + LEE Sbjct: 194 EVGEVWGIGRRIAKRLNELGIYTVFDLARMKPEAARAEFSIVVGKTVQELRGISRIDLEE 253 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A K++II SRSFG +TD ++ A+ + A A KLR ++ + FI+TSPF Sbjct: 254 VADPKKQIISSRSFGLPMTDLAGLQSALSEFVAIACNKLRGQNSVAASMQIFIRTSPFD- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 YGNS V PT D+ A ++LDAIW+ G +Y+KAGVML D Q Sbjct: 313 KGKQYGNSRLVTPPYPTADNLVFTKHALKALDAIWRPGFKYKKAGVMLMDISPADAVQGE 372 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--QQQWQMKRAMLSPRYTTRSSD 417 LF QLM +D +NA+ GRG++ G ++ W M++ S YTT + Sbjct: 373 LFPVEPEHGKRAQLMVALDGINARYGRGSVKTGSIGFHDREHWYMRQERKSQGYTTNWDE 432 Query: 418 LLRVK 422 +L + Sbjct: 433 VLIAR 437 >UniRef50_B5JVF1 UmuC protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVF1_9GAMM Length = 420 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 174/422 (41%), Positives = 257/422 (60%), Gaps = 5/422 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL D N FYASCE VFRP L G+P+ VLSNNDGC+IAR+ E KALGV MG P F+ Sbjct: 1 MLALVDCNNFYASCERVFRPKLEGRPIAVLSNNDGCIIARSQETKALGVPMGAPLFQWLP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + G FS+N+ LY D+SNRVM+ L++ PR+E+YSIDEAF DL+ + +L+DF Sbjct: 61 VLEENGAHIFSANFALYGDLSNRVMAVLKDECPRLEVYSIDEAFLDLS-MVPLCELSDFC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R +R V + T + V +G+A +KTLAKLANH AKK + G+ + E+ R MS+LP Sbjct: 120 RALREKVRRWTGVPVSIGVAPSKTLAKLANHVAKKH-PSSDGIWLMRGTEKNR--MSSLP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+GRR+ + + GI TV L + + + RK +V +ERTVRELRGE C ++ Sbjct: 177 VSEVWGVGRRLGARFEGFGINTVWQLRNAETAWARKVASVNMERTVRELRGERCFDIDST 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +Q+I+ SRSFG+ +T + A+ ++A RA EKLR + + I F T+PF + Sbjct: 237 EEPRQQILVSRSFGQMVTSKDELASALSNFAWRAGEKLRRQGARTQSIRLFAHTNPFRKD 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y ++ T + A + LD +++ G+ Y+KAGV+L + +G+ Q +L Sbjct: 297 MPRYCGRVRIQFHQATDSPPVLAKAVAQGLDQVYRHGYHYKKAGVVLDELLPRGIVQWSL 356 Query: 361 FDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 + + R + VMD +N K G G + A QG+ + W+M+++ SP +TT ++L Sbjct: 357 LSEESERCEKKSHIGGVMDAINDKMGTGKIRMASQGLGENWKMQQSRQSPSWTTDWANLK 416 Query: 420 RV 421 + Sbjct: 417 TI 418 >UniRef50_P07375 Protein mucB n=137 Tax=root RepID=MUCB_ECOLX Length = 420 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 232/421 (55%), Positives = 277/421 (65%), Gaps = 4/421 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL DVN YASCE FRPDL + V VLSNNDG ++ARN AK G+KMGDP+FK + Sbjct: 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R + FSSNY LYA MS R + +E L+ VE YSIDE F D G+ L FG Sbjct: 61 IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R V + T L GVGIA+TKTLAKL NHAAK W TGGVV L + R +KLMS LP Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTW-PATGGVVALDDGARLKKLMSILP 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWG+G R K L MGIKTVLDLA D R IRK F VVLERTVRELRGE C LEE Sbjct: 180 VAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEEN 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P KQ+I+ SRSFG+R+ M+QA+ +AARAAEKLR+E QYCR IS FI+TSP+++ Sbjct: 240 PPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSVR 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + Y N A+ KL TQDSR II AA IW+ Y KAGVML DF + QL+L Sbjct: 300 DTQYANQATEKLTVATQDSRTIIQAAQAL-ARIWREDIAYAKAGVMLADFSGKEA-QLDL 357 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FD P GSE LM V+D +N + G+ L+FAGQGI + M+R MLSP YTT + Sbjct: 358 FDSATPSAGSEALMAVLDGINRR-GKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 416 Query: 421 V 421 Sbjct: 417 A 417 >UniRef50_C7RB82 DNA-directed DNA polymerase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB82_KANKD Length = 422 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 169/420 (40%), Positives = 254/420 (60%), Gaps = 6/420 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +ALCDVN+FY SCE +FRPDL+GKPV+VLSNNDGC+IA + EAKALG+ M P+ + + + Sbjct: 8 YALCDVNSFYVSCERMFRPDLYGKPVIVLSNNDGCIIALSDEAKALGIPMAAPYHEARPI 67 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 ++ V CFSSNY LY D+S R LE+ +V YS+DE+F G +N DLT + Sbjct: 68 IQKHKVTCFSSNYGLYGDISKRFNWILEQHCDQVAPYSVDESFMRFEGFQN--DLTQRAQ 125 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR+ + + L V +G+ TKTLAK+ANH AKK + T GVVDLSN ++ + + V Sbjct: 126 AIRSELWRCLSLPVCIGLGPTKTLAKVANHFAKKHKTTTHGVVDLSNPATRKWALKQIAV 185 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +WGIGR++SKKL I T DL + D + +++ F+V +ERT+ ELRG+PCL+ E Sbjct: 186 AKIWGIGRQLSKKLILQDIHTAWDLHNADYKTLQRMFSVNMERTILELRGQPCLKFSELP 245 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 K+ I+ SRSFG+ ++ Y +++A+ + +R EKLR++ I+ F+ Sbjct: 246 EPKKSILNSRSFGKPLSIYSDLKEAVAHHTSRCCEKLRNQSSLASSITVFL-YGQRKELV 304 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 + S +++L PT D+ + A + L I +AG Y+KAG+ML Q ++F Sbjct: 305 YHNRPSVTLQLPEPTDDTSIFLQAVEQGLRHIVKAGESYKKAGIMLNGIVDSHGYQPDIF 364 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 + RP +LM +D +N + G+ T+ F G + W M+ SP YT+R D+L++ Sbjct: 365 EGVPQRP---ELMESLDKINRRYGQDTVKFGSLGFAKNWAMRANSCSPHYTSRWQDILKL 421 >UniRef50_Q48B37 RulB protein n=30 Tax=Pseudomonas RepID=Q48B37_PSE14 Length = 427 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 202/422 (47%), Positives = 273/422 (64%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F L D N+FYASCE VFRPDL P+VVLSNNDGCVIAR+ +AK VKMG P+F+ KD Sbjct: 8 VFGLVDCNSFYASCERVFRPDLAKVPIVVLSNNDGCVIARSYDAKPY-VKMGAPYFQIKD 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + RR G+ FSSN+ LY D+S RVM+ +E + P VE+YSIDEAF DL+G+ +LT+ G Sbjct: 67 VLRRHGIQSFSSNFALYGDLSQRVMAIIESMVPAVEVYSIDEAFADLSGMP--GNLTELG 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR+ V + T + VGVGIA TKTLAKLANH AK+ Q TGGVVD+ + ++ ++ Sbjct: 125 RSIRSKVYRCTGIPVGVGIAPTKTLAKLANHTAKRLQAHTGGVVDICDPVKRDWVLRNTS 184 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +VWGIGR++ L+ M I + DLA D +RK F+VV+E+T REL G CL+L+E Sbjct: 185 VGEVWGIGRKMKAHLEGMQILSAKDLAMADPWMLRKTFSVVIEKTARELAGTACLELDEV 244 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +QEI CSR FG+R+T+ +++A+ +Y RA+EKLR++ C+ I I+T F + Sbjct: 245 EPPRQEICCSRMFGKRLTELGPIKEAVATYMMRASEKLRAQGSVCKKIRVSIRTGMFNPD 304 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y N A V+L PT D R + AT ++ I++ G RY KA V+L D G +L Sbjct: 305 EAKYANGALVQLPYPTNDVRLMTQYATEAVSRIFRPGFRYSKAEVLLMDICQPGEFTDDL 364 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F N P S++LM +D++N K GRGTL + W M+R +S YTTR L Sbjct: 365 FAVNQPVS-SDRLMAALDSINGKWGRGTLRTGSVPVTPDWGMRREQMSQSYTTRLDQLWV 423 Query: 421 VK 422 VK Sbjct: 424 VK 425 >UniRef50_A5FIG7 DNA-directed DNA polymerase n=10 Tax=cellular organisms RepID=A5FIG7_FLAJ1 Length = 446 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 172/422 (40%), Positives = 255/422 (60%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASC+ VF P L KP+V+LSNNDGCVI+R+ EAKALG+ M P FK + Sbjct: 28 MFALVDCNNFYASCQRVFEPHLREKPIVILSNNDGCVISRSDEAKALGIPMAIPAFKYES 87 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 +F+ + +SSNY LY DMSNRVM+ L +P +EIYSIDEAF +G + D+ G Sbjct: 88 VFKEKNIFVYSSNYPLYGDMSNRVMNLLRTYTPEIEIYSIDEAFLKFSGY-DLFDMNTLG 146 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R V Q T + V +G A TK LAK+AN A+K+ +T V + + E++ K + Sbjct: 147 LKMRKEVTQGTGIPVSIGFASTKALAKMANKIARKFADRTQNVHCIDSEEKRVKALKWSK 206 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGR+ +K+L A I T + ++RK +VV R EL G+P L+LEE Sbjct: 207 IEDVWGIGRKHAKRLKAKKINTAYEFTQLPDAWVRKEMSVVGLRLKHELEGKPTLELEE- 265 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A ++ I +RSF +R T Y + + I ++ A AEKLR ++ +C ++ FI+TS Sbjct: 266 AADRKMIATTRSFEKRYTSYEEISERISTFTASCAEKLRRQNCHCNMVTVFIQTSFIKNE 325 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +Y S ++ PT + ++ AA + AI++ G+RY+KAGV++ QLNL Sbjct: 326 ESHYSRSITITTDFPTNSTIELNAAAQKGFKAIFKKGYRYKKAGVIVMGLTPNSETQLNL 385 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+ P + LM+V+D +N G + F Q + +QW+MK+ LSP+++T D++ Sbjct: 386 FE--TSNPKHQPLMSVIDKMNQNYGNNKIKFGVQSLGRQWKMKQNRLSPKFSTSLKDVIT 443 Query: 421 VK 422 VK Sbjct: 444 VK 445 >UniRef50_Q1QXT4 DNA-directed DNA polymerase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXT4_CHRSD Length = 426 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 180/424 (42%), Positives = 243/424 (57%), Gaps = 4/424 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D N FY SCE VF+P L G PV V+SNNDGCVIAR+ E KALGV+MG P F+ ++ Sbjct: 1 MIGLVDCNNFYVSCERVFQPRLEGVPVGVMSNNDGCVIARSNELKALGVEMGTPAFELQE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + SSNYELY DMS RV LEE S VE YSIDE F G Sbjct: 61 WVNQGRIHLLSSNYELYGDMSARVREVLEEFSAGVEPYSIDEMFVRFDGFDAA-TTQALA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R + V Q T + V VG+A T+TLAKLAN AAKK G V +N + R+L+ Sbjct: 120 RTLYRNVRQFTGIPVCVGVAPTRTLAKLANRAAKKLPEYGGTCVMHANGDDTRRLLEHTA 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + D+WG+G+R+ ++L GIKT DL D + IR+ F+V LERTVREL+G PC++L + Sbjct: 180 LGDIWGVGQRLVERLALQGIKTAWDLRQADPKAIRQRFSVTLERTVRELQGTPCIELHDA 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I+ SRSFG D ++ AI +A R AEKLR + + R + F+KT+ + Sbjct: 240 DRPRDRIMTSRSFGRLTGDLGDLQDAIRQHAQRGAEKLRRQDSHARAVLVFLKTNRHRPD 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y S ++L PT DSR I+ AA + L+ I++ G+R+ K GVML D QL+L Sbjct: 300 LPQYSPSIVIELPEPTDDSRPILAAARQGLETIYRRGYRFMKGGVMLLDLVDANREQLSL 359 Query: 361 FDDNA---PRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 D R +LM +D LN K G+GT+ W ++ A +PR+TT+ + Sbjct: 360 LDTPEREAQRERDHKLMAALDALNGKMGKGTVRLGVPRQNAAWHLRCAHRTPRWTTQWRE 419 Query: 418 LLRV 421 L R+ Sbjct: 420 LPRI 423 >UniRef50_C8X3R0 DNA-directed DNA polymerase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3R0_DESRD Length = 397 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 94/400 (23%), Positives = 164/400 (41%), Gaps = 21/400 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E P+L G+PV+V G V A + EA+ GV+ P + + L Sbjct: 5 ILHVDMDAFFASIEQQDYPELQGRPVIVGGGERGVVSAASYEARRFGVRSAMPISQARKL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT-DFG 120 ++ Y ++S +VM+ L+ SP VE SIDEA+ D+TG + G Sbjct: 65 CPNGN--FCHGRHKRYKELSRQVMTVLDGFSPCVEQASIDEAYLDITGTERLLGPPGEVG 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R ++ + RT L+ +GIA K +AK+A+ K G + E+ + + LP Sbjct: 123 RALQQAIRVRTGLSASIGIAPNKFVAKIASDWDKP------GGLTWIRAEQLQTFLDKLP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + G+G R S L+ +G+++V + F ++ G +++ + Sbjct: 177 VRKLPGVGPRTSALLERLGVESVGAVRRFSEAFWTDRLGEGGKQLWARAHGIDDSEVQPY 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + + D + + A R +LR E ++ I+ F Sbjct: 237 HAP-KSCGAEHTLPQDTEDEAILISWLLHEAERIGRELRREVMEAGTVTLKIRYDDFT-- 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGVAQL 358 + KL PTQ ++D+ +A L + G+ G+ G QL Sbjct: 294 ----TFTRCRKLSPPTQSTQDLYSAGVTLLRQQQLQ-RPVRLVGLSAGNLAPMGSGRRQL 348 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 + F+ A L MD + + G ++ A Q Sbjct: 349 SFFE--ADSARRNSLDAAMDAVRERFGGTSVRRAEILRAQ 386 >UniRef50_B9M459 DNA-directed DNA polymerase n=14 Tax=Bacteria RepID=B9M459_GEOSF Length = 420 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 95/400 (23%), Positives = 165/400 (41%), Gaps = 22/400 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVV-LSNNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D+NAF+AS E P L GKPV V S+ V + EA+A GVK G ++ K Sbjct: 14 IIMHVDMNAFFASVEQQNDPRLRGKPVAVVGSSKRTIVTTCSYEARAFGVKTGMALWEAK 73 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 +V + Y +S+ +M + + +P VE +SIDEAF D++G + + Sbjct: 74 SCCPNLILVVGKNR--EYTRISSLIMKLMYDFTPLVETFSIDEAFLDISGSLSLFGTPEN 131 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++A + + LT +GIA K LAKLA+ K + + M Sbjct: 132 IASLLKARIGDQFGLTCSIGIAPNKLLAKLASDMQKPDG------LTVIKPAEVALTMDR 185 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 P+ D+ GIG++ K L +GI+T DL ++ +R+ F +V E G + Sbjct: 186 TPIRDMCGIGKKTEKSLTMLGIRTCGDLGRFPVKLLRQKFGIVGEALHLMGLGVDDSPVV 245 Query: 239 EFAPT--KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + S + + + + + + A ++R + + ++ + Sbjct: 246 PQEESDLVKSVGHSMTLEKDLEKREDILRYLLQLAEMVGRRMRRYGVAGKTVCLSVRYAD 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F + S + L T S +I A LD++ + GV L + Q Sbjct: 306 F-----FTNFSRQLTLPEYTNLSAEIYRGAVTLLDSVELT-QPVRLLGVKLSNLRHQD-E 358 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI 396 QL LF L MD +N++ G ++ + Sbjct: 359 QLPLF---EGERKKAHLAKAMDEVNSRFGEFSVTYGTLLT 395 >UniRef50_C6BW91 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C6BW91_DESAD Length = 389 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 170/402 (42%), Gaps = 22/402 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E + P+L GKPV V S + + A + EA+ GV+ P + Sbjct: 5 IMHIDMDAFFASVEQLDNPELRGKPVGVGSMHERSVLSAASYEARKFGVRSAMPVRQALK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 L + + S + Y ++S +VM+ L SP VE SIDEA+ D+TG Sbjct: 65 LCPQ--LQVVSGSRHRYKEISRKVMAALSNYSPIVEQASIDEAYIDITGTEKLFGTPLQI 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+A + + T LT VGIA K LAK+A+ K + + E+ + + L Sbjct: 123 ARSIKADIRKATGLTASVGIAPVKFLAKIASDLNKPDG------ISIITAEQVQDFLKTL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV+ + G+G++ +L + GI DL F ++ F + G + E Sbjct: 177 PVEKIPGVGKKALPRLRSYGITYAADLRRYPPEFWKERFGERGLVLYEKGAGIDPTPVTE 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + +FGE ++D +++ + + R A +R R ++ +K F Sbjct: 237 G-GAMKSSSAENTFGEDVSDIHTLKTLLLKQSERIAADIRKHGVKGRTVTLKVKFPDFR- 294 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L + T + I A LDA G + GV + +F + QL+ Sbjct: 295 -----QITRSRTLDSRTSHAGTIYKTACSLLDAELPIG-PIRLIGVGISNFEERN-RQLS 347 Query: 360 LFDDNAP---RPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 L DD EQL +D + K G+ L + Sbjct: 348 LLDDPEKPKESKRLEQLDKAVDQVRLKFGKDILTRGRLLEDE 389 >UniRef50_C0VGI8 Nucleotidyltransferase/DNA polymerase n=4 Tax=Acinetobacter RepID=C0VGI8_9GAMM Length = 432 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 170/427 (39%), Positives = 249/427 (58%), Gaps = 8/427 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL DVN Y SCE VF P L +PVVVLSNNDGCV++R+ EAK LG++M P+F+ ++ Sbjct: 7 IFALVDVNNAYVSCERVFNPKLENRPVVVLSNNDGCVVSRSYEAKQLGIRMAVPFFQIEE 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVRNCRDLTD 118 + R+ V FSSNY LYA+MS R M+ L E+YSIDE F +LT ++ DL+ Sbjct: 67 IIRQHHVAVFSSNYALYAEMSRRFMNILASFVDPCEQEVYSIDECFLELTAYQHHYDLSK 126 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE--RQRKLM 176 + +I +TV + L +GI +KT AKLANH AK GV + + + L+ Sbjct: 127 YAFQILSTVKKWLGLPCCIGIGYSKTQAKLANHLAKTHASFN-GVCNFVDEDPCIIEDLL 185 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 PV +VWG+GR+I ++L+ M I +V+DL TD + + KHF+VVLE TV+EL+G CL+ Sbjct: 186 MHTPVGEVWGVGRKIRQRLEKMNIYSVMDLLQTDPKRMGKHFSVVLENTVKELQGVACLE 245 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 +E+ +Q+I+ SRSFG+ I D S+ A+ +A RA E+LR + C+ + I+T+ Sbjct: 246 IEDVISDRQQILSSRSFGQPIEDKNSLSGALTEFALRAVERLRKQKLLCKAVGISIRTNR 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F + Y + V L+ + D I+ A + LD I+Q GHRY+KA V+L D Q Sbjct: 306 FNKDAYYRPFT-VVYLVDYSDDRLVIMKAVQQGLDRIYQVGHRYKKAEVILLDIIPQHRH 364 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ--GIQQQWQMKRAMLSPRYTTR 414 ++LF + + L D +N + GR + F + W M + SP Y T+ Sbjct: 365 AVDLFYNTEEMLTRQNLSVAFDEINERFGRDVMTFGRLIGPQGRAWGMTQNHKSPSYLTK 424 Query: 415 SSDLLRV 421 D+LRV Sbjct: 425 WEDVLRV 431 >UniRef50_C6BX75 DNA-directed DNA polymerase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BX75_DESAD Length = 423 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 173/423 (40%), Positives = 247/423 (58%), Gaps = 5/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE +FRP++ +PVVVLSNNDGCVI+R+ EAK +GV MG P +K + Sbjct: 3 IFALVDCNNFYVSCERLFRPEIKHRPVVVLSNNDGCVISRSQEAKDIGVPMGAPAYKYQS 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 F + V FSSNY LY D+S RV +TL L+P +E+YSIDE+F + R+L G Sbjct: 63 FFLQNNVEIFSSNYALYGDLSQRVTATLASLTPDLEVYSIDESFLEFPPCM-LRELPSIG 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +EIR +L+ T + V VG TKTLAK+A+ AKK+ + G L +L+ +P Sbjct: 122 KEIRTRILKWTGIPVSVGFGSTKTLAKVASRFAKKYPQT-EGTFSLCGRNDLDRLLDKVP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V DVWGIGRR K+L A G+ T D +++K+ +V T ELRG PC +L+ Sbjct: 181 VTDVWGIGRRHGKRLIARGVSTARTFKDLPNLWLKKNMSVTGLHTALELRGTPCFELDNS 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I SRSFG +T + +++ +Y ARA EKLR + + ++ T+ F N Sbjct: 241 PKPKKTISSSRSFGRPVTALSDLEESVAAYVARAGEKLREQQSLTNGVMVYLTTNRFN-N 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y NSA+ L T + ++IN + + +I++ G Y+K GV+L D + Q NL Sbjct: 300 LPQYSNSATRMLPIATDYTPELINTGLQCIRSIYKEGFSYKKTGVVLLDLCGKYNRQCNL 359 Query: 361 --FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 D A E +M ++D+ N + GR TL +A +G++Q WQM R SP YTT DL Sbjct: 360 LELDHKAESAKKEAIMNLLDSANTRFGRRTLSYASEGLEQPWQMNRKYKSPSYTTSWDDL 419 Query: 419 LRV 421 ++ Sbjct: 420 PKI 422 >UniRef50_B2A8L2 DNA-directed DNA polymerase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8L2_NATTJ Length = 408 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 170/407 (41%), Gaps = 27/407 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E P+L KPV++ + G V +A+ G+ P ++ + L Sbjct: 16 ILHIDMDAFYASVEKRDNPELEDKPVIIGGSRRGVVSTCCYKARKYGLHSAMPMYRAQRL 75 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 V + + Y +S + E +P VE S+DEAF D+TG N D + Sbjct: 76 CPHG--VYLRPDMDKYRRVSQEIKKIFLEFTPLVEPLSLDEAFLDVTGSLNLFGDAVNIA 133 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +I+ + + LT +G+A K +AK+A+ K + +++ ++ LP Sbjct: 134 EKIQTQISDQLQLTCSIGVATNKFIAKVASDLKKPAG------LTHVPTGKEQDFLAPLP 187 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADT-----DIRFIRKHFNVVLERTVRELRGEPCL 235 VD +WG+G + + ++ + G T+ +L +I + K FN+ E T+ +G Sbjct: 188 VDKLWGVGEKTTARIKSRGYHTIGELQQMLAKAQNINSLAKSFNIT-EDTLLLAKGYDDR 246 Query: 236 QLEEFAPTKQEIICSRSFGERIT---DYPSMRQAICSYAARAAEKLRSEHQYCRFISTFI 292 ++ P + I ++F + +T Y + + ++ + +LR + ++ I Sbjct: 247 EVVPEEPP-KSIGQEKTFAQDLTAGSQYNQLIPHLLKFSEQVGARLRKAGYKGKTVTVKI 305 Query: 293 KTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGHRYQKAGVMLGDFF 351 + S F + + T ++I A L + + + GV + + Sbjct: 306 RDSRFK------TWTKQKTVPE-TDQDKEIYAHAQELLQNMNLKPSDEIRLLGVTVSNLV 358 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 S QL+L N +QL +D + K G + A Q Sbjct: 359 SSTQQQLSLDMSNEQYEKEQQLQWTLDEMREKFGDDAIRRARLIFPQ 405 >UniRef50_B4WV07 ImpB/MucB/SamB family n=6 Tax=Synechococcus sp. PCC 7335 RepID=B4WV07_9SYNE Length = 425 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 203/427 (47%), Positives = 274/427 (64%), Gaps = 10/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FALCD N FY SCE VFRP+L VLSNNDGC IAR+ + K LGV MG PW K + Sbjct: 3 IFALCDCNQFYVSCERVFRPELETHACGVLSNNDGCFIARSPQLKTLGVPMGGPWHKYRS 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + V FSSNY LY DMS RVM+ L +P +E+YSIDE F L G + DLTD+G Sbjct: 63 LCTQNNVAVFSSNYALYGDMSQRVMACLGTFTPDMEVYSIDEVFLQLDGFAHL-DLTDYG 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ V Q T + +GVGI TKTLAK+AN+ AKK R T GV +L + Q +++ + Sbjct: 122 RQMQRKVHQWTGIPIGVGIGPTKTLAKVANYVAKK--RTTSGVFNLCDRTLQDQVLPTIA 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+D+WGIGRR + KL+A+GIKT DL + R IR+ FNVV ER V ELRG CL LEE Sbjct: 180 VEDIWGIGRRWALKLNAIGIKTAADLRAAEPRTIRQVFNVVAERIVHELRGTACLGLEEI 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P K+ I+CSRSFG+ I++ + +AI +AARAA KLR + C + F++T+ F + Sbjct: 240 QP-KKNIMCSRSFGQMISEKHLLLEAIADHAARAAGKLRGQGSRCGGLQVFLQTNRFRKH 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y NS + P++DSR+II+AA + +++ G Y K GVML D Q NL Sbjct: 299 EAQYSNSCTWSFTVPSRDSREIIHAARACMAQLYRPGFEYHKCGVMLVDLAPATTVQGNL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ-----QQWQMKRAMLSPRYTTRS 415 F + S++LM +MD+LNAK GRGT+ FA QG++ + W M++ SPRYTTR Sbjct: 359 FC-STDHEQSDELMALMDSLNAKMGRGTVRFAAQGLEKGKQRKSWGMRQQWRSPRYTTRL 417 Query: 416 SDLLRVK 422 ++++V+ Sbjct: 418 KEIVKVR 424 >UniRef50_A0LG84 DNA-directed DNA polymerase n=4 Tax=Deltaproteobacteria RepID=A0LG84_SYNFM Length = 425 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 172/395 (43%), Gaps = 19/395 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E RP+ GKPV+V G V A + EA+ GV P F+ K L Sbjct: 37 IMHVDMDAFYASVEQADRPEFKGKPVIVGGARRGVVSAASYEARRFGVHSAMPVFQAKRL 96 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFG 120 G + Y ++S VM L +SP VE SIDEAF D+TG G Sbjct: 97 CP--GGIFLPVRMGRYKEVSKVVMDILCGISPLVEQISIDEAFVDITGTEALHGSPESLG 154 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R +++ + T +T VGIA K +AK+A+ K + + +R ++ LP Sbjct: 155 RRVKSQIRAATRVTCSVGIAPGKFVAKIASDIHKPDG------LTIVEDDRVEAFLAPLP 208 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ + GIG++ S+ L ++G++ + D+ F K + RG + + Sbjct: 209 VERIPGIGKKTSEALRSLGVRAIGDVLRFPASFWVKRLGAWGVKLHERARGVDPAPVIAY 268 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + +F E + D ++ + + + ++LR E R ++ +K + F+ Sbjct: 269 SQA-KSCSAEDTFPEDVDDVETLEKWLFVQSEEVGKELRRESFRGRTVTLKVKFADFS-- 325 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + S L T ++ I A+R L A+ + + + GV + + S Q + Sbjct: 326 ----SITRSHTLREATDCTQLIFGTASRLLRAL-KLNRKVRLVGVGVSNL-SAMPEQKPV 379 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 F D + +L MD ++ + G G L Sbjct: 380 FSD-SMLVRQRKLDRAMDRIHERFGHGALRRGRVL 413 >UniRef50_Q818U9 DNA polymerase IV n=137 Tax=Bacillaceae RepID=DPO4_BACCR Length = 415 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 93/417 (22%), Positives = 172/417 (41%), Gaps = 22/417 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+N F+AS E P L GKP+ V N G +I + EA+ G++ P ++ Sbjct: 14 VILHVDMNCFFASVEIAHDPSLQGKPLAVAGNEKERKGIIITCSYEAREYGIRTTMPLWE 73 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K L + +V N+ LY + S ++ L + +++ SIDE + D+T Sbjct: 74 AKRLCPQ--LVVRRPNFTLYREASFQMFQVLSRFTEKIQPVSIDEGYLDITDCYALGSPL 131 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + + I+ +L L +GIA LAK A+ K + + +++ Sbjct: 132 EIAKMIQQALLTELQLPCSIGIAPNLFLAKTASDMKKPLG------ITVLRKRDIPEMIW 185 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V+ + GIG + ++KL+ + I T+ LA D IR + +G ++ Sbjct: 186 PLSVEAMHGIGEKTAEKLNEIHIHTIEQLAKGDEHIIRAKIGKHGIDLQKRAKGTDDREV 245 Query: 238 EEFAP-TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + S +F + + + + + + +++L+ I IK Sbjct: 246 DPSQMGQHKSVGNSMTFSKDMDEEKELLDMLERLSKSVSKRLQKRTLVSYNIQIMIKYHD 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF--SQG 354 + S +L + RDI AA+R W G + GV + ++ Sbjct: 306 ------RRTVTRSKQLKNAIWEERDIFQAASRLWKQHWD-GDSVRLLGVTATEIEWKTES 358 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 V QL+LF E L+ V+D +N K G L Q +++Q + + L ++ Sbjct: 359 VKQLDLFS-FEEDAKKEPLLAVIDQINDKYGTPILQRGSQLLRKQEKSFQQKLENKF 414 >UniRef50_Q4FMY4 UmuC n=6 Tax=Bacteria RepID=Q4FMY4_PELUB Length = 426 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 173/421 (41%), Positives = 252/421 (59%), Gaps = 6/421 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N+FY SCE +F P + KPVVVLSNNDGC+IAR+ EAK LG+KMG+P+FK K++ Sbjct: 10 IALVDCNSFYVSCERLFNPKIRNKPVVVLSNNDGCIIARSNEAKFLGIKMGEPYFKAKEI 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V FSSNY LY D+S RVM TL+ +P +EIYS+DEAF DL+ + ++ D G+ Sbjct: 70 ILKNKVYVFSSNYSLYGDLSRRVMRTLKRFNPELEIYSVDEAFLDLSNYPDD-EVEDVGK 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 EIR+ +LQ T + +GIA+TKTL+K+ANH AKK + GV +L +E L+ + + Sbjct: 129 EIRSIILQWTGIPTSIGIAKTKTLSKIANHIAKK---KQSGVTNLIGIENIDPLLEKIDI 185 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +DVWG+G++++K GI L + +I+K NV+ RT ELRG PC+ LE Sbjct: 186 NDVWGVGKQMTKFYHQNGIYNAKQLKNMSNTWIKKSSNVLSSRTALELRGIPCIPLETKT 245 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++ + SRSFG R+ + + +A+ SY A+EK+RSE + I+ ++TSPF Sbjct: 246 SKRKSCVVSRSFGTRVEKFQELEEAVASYCLNASEKIRSESLIAKSITVSVRTSPFQNRG 305 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 YY N+ ++ T +S +I+ A +L+ I+ G+RYQKAG+ L S + NLF Sbjct: 306 VYYSNAKTIDFPIATNNSIEIVKTALIALNEIFINGYRYQKAGITLTGLVSSSGS-KNLF 364 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 + LM +D+ N K GR TL A G+ ++W M+R S T L + Sbjct: 365 S-TEKDEKIKGLMRSIDSTNYKYGRSTLSLASAGVNKKWNMRRDHSSKIDTANFHSLPII 423 Query: 422 K 422 K Sbjct: 424 K 424 >UniRef50_C6PAP1 DNA-directed DNA polymerase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PAP1_CLOTS Length = 414 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 178/403 (44%), Gaps = 21/403 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+NAFYASCE L GKPVVV + G V+ + EA+ G+K G P ++ Sbjct: 4 ILHIDMNAFYASCEQSKDKSLKGKPVVVAGDPSKRHGIVLTASYEARKYGIKTGMPNWQA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 + L + +++ Y S ++++ L+E SP VE +SIDEA+ D+TG + Sbjct: 64 RTLC--NDAIFLKPDFDSYIQYSIKMINILKEFSPLVEQFSIDEAWVDVTGCEDLFGSPI 121 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + +I++ + L +GI++ K +AK+A+ K LE+ + ++ Sbjct: 122 EIAHKIQSRIKDSLDLPCSIGISENKLVAKMASELKKPLGITEL------PLEKIKDMIW 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V+++ IG SKKL + GI T+ DLA+T + F+ F + G + Sbjct: 176 PLDVENLIWIGSARSKKLKSFGINTIGDLANTPMTFLINLFGKPGKDIYYFANGIDLSPV 235 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 +A T + + + TD +++ S + ++R ++ + +S +K + F Sbjct: 236 RPYAITAKSFGNTITLPRDYTDIEDIKRGFLSLSEMVGSRMRKQNFMGKTVSITVKDNNF 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGVA 356 + S + T + DI NAA + + + + GV + + Sbjct: 296 K------SITRSRTID-YTVLTEDIFNAAMKLFKENYDTNFKIRMLGVSVSNLVKIDENI 348 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 QL LF NA ++L +D + K G ++ ++ Sbjct: 349 QLCLF-QNAKYENLKKLNYAIDMIRDKYGFDSISRGLILTGEK 390 >UniRef50_C7I5S1 DNA-directed DNA polymerase n=2 Tax=Proteobacteria RepID=C7I5S1_THIIN Length = 431 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 185/432 (42%), Positives = 244/432 (56%), Gaps = 14/432 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASCE VF+P+L GKP+VVLSNNDGC IAR+ EAKALGVKMG P F+ Sbjct: 1 MFALIDGNNFYASCECVFQPELRGKPLVVLSNNDGCAIARSDEAKALGVKMGQPIFEVPP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR + S+N+ LY DMS RV++ L E +PRVE YSIDE+F DLTG+ F Sbjct: 61 AVRR-QLAIRSANFTLYGDMSARVLAILREAAPRVESYSIDESFLDLTGILKPGSREAFC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK---------KWQRQTGGVVDLSNLER 171 RE+R V + T + VGI TKTLAKL NH AK + + + + Sbjct: 120 RELRERVHRWTGIPNCVGIGATKTLAKLGNHVAKSAVRKPGSYPAELGRVADLSALSPQG 179 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 +++A PV ++WG+GRR + KL +M I+T L L D I F VVL RT REL Sbjct: 180 LSAVLAATPVGELWGVGRRWAAKLRSMNIETALQLRDAPRALILDSFGVVLSRTQRELAS 239 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 EPCL LEE P +Q+I+ SRSFGER+ D+ S+ +A ++A RA EKLR+ + F Sbjct: 240 EPCLALEEVEPDRQQIMVSRSFGERVEDHQSIGEAFATFAMRACEKLRARGLVASAVGIF 299 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 T F + + L T DSR ++N + + G+ Y+KAGV L D Sbjct: 300 ANTDHFRPELHQHHPQRTTDLPRATSDSRVVLNTIRQMQRGFLKDGYAYKKAGVWLMDLS 359 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI--QQQWQMKRAMLSP 409 Q +LF G ++LM +D +N + GRGT+ G + QW M++A LS Sbjct: 360 RPDQLQPDLFS--TITIGDDKLMQTLDAINRRYGRGTVGLGATGWRERPQWGMRQATLSS 417 Query: 410 RYTTRSSDLLRV 421 R+TT DL R Sbjct: 418 RFTTSLRDLPRA 429 >UniRef50_Q15TC7 DNA-directed DNA polymerase n=25 Tax=Proteobacteria RepID=Q15TC7_PSEA6 Length = 421 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 177/427 (41%), Positives = 246/427 (57%), Gaps = 12/427 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGV-KMGDPWFKQK 59 MFALCD N+ YASCE VF P + KPVVVL+NNDGC+ A AK +GV K P+F+ K Sbjct: 1 MFALCDANSMYASCEKVFDPSIRNKPVVVLTNNDGCICAACGIAKRMGVGKKFVPYFQVK 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFC----DLTGVRNCRD 115 GVV SSNYELYAD+S R+M T +P + +YSIDE F D T ++ Sbjct: 61 KELEAAGVVIRSSNYELYADLSQRMMDTCARFAPDINVYSIDECFLYYGKDATAPQD--G 118 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 + IR TV + L + VGI T TLAK+ANHAAK GV L N + ++ + Sbjct: 119 WNNLANSIRKTVWREVRLPICVGIGPTPTLAKVANHAAK-NVSGFIGVAVLDNEDARKHV 177 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + L V DVWGIG+R+ KL+A+GI T +LA+ D IRK F++++E TVREL GE Sbjct: 178 LKQLAVTDVWGIGKRLGVKLNALGIHTAWELANRDPSHIRKAFSIIVENTVRELNGEIRH 237 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E K+EI +RSFG R+TDY +R A+ +A + KLR + ++ F S Sbjct: 238 CWETVRGAKKEIYSTRSFGSRVTDYDELRAALAGHAETVSVKLRKQKSVTSSMTLFATNS 297 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 P N Y S + PT D+R+I++ ++ ++Q G Y K GV L D Q + Sbjct: 298 PHD-NGGYVRRSFFHRFTVPTNDTRNILHVIDSAMSQLFQPGVHYYKCGVGLMDLHEQDL 356 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRS 415 Q +LF+ + LM MD +N++ GR T+ A +G +Q++ MKRA LSP+YTT+ Sbjct: 357 YQYDLFNPSNDNSR---LMACMDNINSRYGRSTVQMAAKGFEQRFSMKRAFLSPQYTTQW 413 Query: 416 SDLLRVK 422 D+ ++K Sbjct: 414 RDIPKIK 420 >UniRef50_A8ZS21 DNA-directed DNA polymerase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZS21_DESOH Length = 384 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 162/397 (40%), Gaps = 20/397 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AF+AS E + P+ G+ VVV S+ G V A + EA+ GV P + Sbjct: 1 MILHVDMDAFFASVEQLDHPEWRGRAVVVGRSSGRGVVAAASYEARVFGVHSAMPMSRAL 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 L + E Y ++S RVM L+ +SP VE SIDEA+ D++G Sbjct: 61 KLCPDA--IVAPPRMERYKEVSARVMEILDAVSPLVEQVSIDEAYLDISGCERLHGTPET 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G+ I+ V +T VG+A K LAK+A+ K + + E + + Sbjct: 119 IGKNIKKQVFDTLGITCSVGVAPIKFLAKIASDMNKPDG------LMVILPEAADRFIET 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV V G+G K+L MGI+T+ D+ + K R RG ++ Sbjct: 173 LPVHKVPGVGSVTKKQLALMGIETLGDVVRLPDGVLSKKLGKFGRRLKELSRGIDDSRVV 232 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + P + + + + +R + A L+ + R + IK + F+ Sbjct: 233 PWHPA-KSVSEETTLSRDTAEKQELRHHLLRQAGDVCRHLQKLNARARVVFIKIKYADFS 291 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQ 357 + L P Q S I A+ L+ A + + GV + + + G Q Sbjct: 292 ------QTTRQTTLDAPVQSSDTIYRQASALLEKQTLA-QKVRLIGVGVTELVVTSGGVQ 344 Query: 358 LNLFD-DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 + LFD + EQ+ + ++ K G+ + Sbjct: 345 MELFDGEARRDSRWEQVDRSVSAISEKFGKTMVKRGS 381 >UniRef50_A8ZLK7 DNA polymerase V, putative n=4 Tax=Cyanobacteria RepID=A8ZLK7_ACAM1 Length = 421 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 178/421 (42%), Positives = 258/421 (61%), Gaps = 6/421 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + LCD N+FYASCE+ P L KPVV+ SNNDG V+ NA+ KALG+ MG P FK + Sbjct: 5 LIGLCDCNSFYASCESALNPSLQHKPVVIASNNDGVVVTANAKGKALGLVMGVPLFKVQA 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V FSSNY LY D+S+RVM+ LE +P EIYSIDE F + + T + Sbjct: 65 LIKKHDVRVFSSNYALYGDLSSRVMTILETFTPEQEIYSIDECFMRM---PEFAEATTYS 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R TVLQ T + V +GI+ +KTLAK+ANH AKK Q+Q GGV D+S +++ P Sbjct: 122 HKVRKTVLQWTGIPVSIGISTSKTLAKIANHVAKK-QKQYGGVFDISAARNAEGILATFP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V D+WGIGR+ +K L + GI++ +L D + IRK VV R + ELRG CL LE Sbjct: 181 VADIWGIGRQYNKWLLSQGIESAKELRDANEGLIRKKMGVVGVRMIHELRGISCLPLELV 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A K+E SRSFG+ +T+ +++AI +YA+RAAEKLR + Q + F +TSPF Sbjct: 241 AKPKKETCVSRSFGQPVTELADLQEAIAAYASRAAEKLRHQEQVAEAMVVFARTSPFK-- 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y+ SA+V+ T + I+ +A ++ I++ G +QKAGV++ + Q +L Sbjct: 299 SGYFRQSATVQFPIATNYTPTIVESARNAMARIYEPGREFQKAGVLMVGLCPETTIQGHL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 ++ + ++LM++MD +N + GRGTL A G++Q W+M+ SPRYTT ++L Sbjct: 359 WEKDEGWEKRKRLMSIMDEVNDRFGRGTLEIAASGLRQTWRMQSKWRSPRYTTCWAELPV 418 Query: 421 V 421 Sbjct: 419 A 419 >UniRef50_A5Y0S5 UmuC-like protein n=9 Tax=Proteobacteria RepID=A5Y0S5_ACIBA Length = 425 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 186/425 (43%), Positives = 246/425 (57%), Gaps = 10/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY SCE VF+P L GKPV++LSNNDGC +AR+ EAKALG+KMG P FK ++L Sbjct: 5 IALIDGNNFYVSCERVFQPHLLGKPVIILSNNDGCAVARSEEAKALGIKMGAPLFKIREL 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + GV SSNY LY DMS RV+ + + SP EIYSIDE F DL+G + + Sbjct: 65 VKEHGVKVLSSNYTLYGDMSRRVVDAVSQFSPHYEIYSIDENFVDLSGFGDRYEA--IAV 122 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++RATV Q T + VGIA+TKTLAKLAN AAKK GGV D + + +PV Sbjct: 123 DMRATVRQVTGIPNCVGIAETKTLAKLANFAAKKNPIF-GGVCDFTQPAVLAWCLDRIPV 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIGR+ KL + GI T L D R+ VVLERTV EL+G CL++E+ A Sbjct: 182 AEVWGIGRQTQIKLASQGIATAAQLRDMPRTLARQLGTVVLERTVAELQGIRCLEIEDIA 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 P ++ + +RS G + D ++ QA+ ++A+RAAEKLR I+ F T+ F+ N Sbjct: 242 PQRKGMAVTRSAGAPMRDLEAVMQALTAHASRAAEKLRLHGLVAGQITAFFHTNSFSKNA 301 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA-----GHRYQKAGVMLGDFFSQGVA 356 + S +VKL T ++ D++ A R A W G+ Y KAGVML D A Sbjct: 302 AQHSVSRTVKLKPMTNNTFDLVQAVNRCARAGWHPKAHEHGYSYTKAGVMLDDLLKAEDA 361 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSS 416 LFD P +LM MD +N + G+ + QG Q + + K M SPR+TTR S Sbjct: 362 PKMLFDIVQ--PRDARLMEAMDAINDRYGKRKVVIGAQGFQNKHEAKADMRSPRFTTRLS 419 Query: 417 DLLRV 421 DL + Sbjct: 420 DLPVI 424 >UniRef50_C9KLE5 DNA polymerase IV n=2 Tax=Veillonellaceae RepID=C9KLE5_9FIRM Length = 395 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 163/402 (40%), Gaps = 24/402 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AF+AS E + KP++V + G V + EA+ GV P + + Sbjct: 6 LVMHVDMDAFFASIEQRDHEEYREKPLIVGGLSGRGVVSTCSYEARRFGVHSAMPIVRAR 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + + +Y Y +S ++ + +P VE SIDEAF DLTG+ Sbjct: 66 RLCPQG--IFVEGDYANYKAVSQQIFAIFARYAPVVEPLSIDEAFLDLTGMELLMESPRA 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + +++A + ++T L VGIA K LAKLA+ K + + + ++ ++ Sbjct: 124 YAEKLKAEIREKTGLVASVGIAPNKFLAKLASDLEKPDG------LVIITEQTKQAVLDP 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLE-RTVRELRGEPCLQL 237 LPV +WG+G++ + +L+A+ I+T+ L T + + F + + G + Sbjct: 178 LPVGRIWGVGQKTAARLEALRIRTIGQLRRTPRERLVRAFGAHMADHLLALASGIDTRPV 237 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + I +F I ++ + + + + + +LR R + ++ F Sbjct: 238 AP-REPAKSIGKEVTFPTDIESAEAVERVLLALSEKVGYRLRRHGCKGRTVQLKLRLGDF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + S L T R+I A A+ + G+ + F + G Sbjct: 297 R------TYTRSRTLAEATCYDREIYETALAFYRALGVK-QGIRLLGISVSGFDTSGAI- 348 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 +LF E L +D + + G + A ++ Sbjct: 349 -SLF---HEEARKENLYAAIDAIKKRFGEQGITKAQLLKKRD 386 >UniRef50_B8CWI6 DNA-directed DNA polymerase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWI6_HALOH Length = 385 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 157/399 (39%), Gaps = 22/399 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQ 58 D++AF+AS E + P+ KPV+V N G V + EA+ GVK + Sbjct: 5 IMHVDMDAFFASVEQLDNPEFRRKPVIVGGIDLENRGVVSTASYEARKYGVKSAMSVVEA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 + L + + Y ++S ++ +P VE SIDEAF DLTG Sbjct: 65 RRLCPEG--IFVKGRHSRYREISEKIFRIFNTYTPLVEKVSIDEAFLDLTGCHRLFGSSV 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + G++I+ + ++ LT +G++ K LAKLA+ K + + K+++ Sbjct: 123 EIGKKIKNKIKEQLGLTASIGLSYNKFLAKLASGMDKPDG------FFIIDDNNVDKILN 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V +VWGIG++ + L + GIKTV L ++ + RG + Sbjct: 177 KLCVGEVWGIGKKTEQLLLSKGIKTVGMLRHLSKSDLKGILGKQGLQLYYLARGIDDRHV 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E + + I +F + + D + + + + R A +LR + ++ + Sbjct: 237 EPGSDI-KSISHEETFSDDLIDPDEVMSHLMNMSERVARRLRKNCLKGSTVFIKVRYNN- 294 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + + D+ I + + G+ + + Q Sbjct: 295 -----RVTLTRRTTIKEYVDDTDSIYRTGLLLIKKHNLLSKPIRLLGIGMANLTDNNGIQ 349 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI 396 L+LF D R ++L + +D + + G ++ Sbjct: 350 LSLFTD---RVRKKRLTSTIDKIKDRYGEKSITRGRNLT 385 >UniRef50_D0J481 DNA-directed DNA polymerase n=4 Tax=cellular organisms RepID=D0J481_COMTE Length = 432 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 189/436 (43%), Positives = 260/436 (59%), Gaps = 19/436 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE FRP L G PVVVLSNNDGC I+R+ EAKALGVKMG P+F+ +D Sbjct: 1 MFALIDGNNFYVSCERAFRPALQGIPVVVLSNNDGCAISRSDEAKALGVKMGQPFFQLRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFC-DLTGVRNCRDLTDF 119 L G+VC S+N+ELY DMS+R+MS L P EIYSIDE+F DL GVR DLT Sbjct: 61 LVEHKGLVCLSANFELYGDMSDRMMSLAAGLGPTQEIYSIDESFIGDLDGVR---DLTRR 117 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK---------KWQRQTGGVVDLSNLE 170 IRA +L+ T + VG+A TKTLAKL NH AK + Q + + Sbjct: 118 AFAIRARILKWTGIPTCVGLAPTKTLAKLCNHVAKDSERKPGSYPAELQRVCNWAELSEQ 177 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 ++ ++ ++WG+GRRIS +L G+ T LDLA R ++VVLERTVREL+ Sbjct: 178 QRTDILGRTAAGEIWGVGRRISVQLAEQGVLTALDLARLPAHAARDGWSVVLERTVRELQ 237 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G C+ LE K++I C+RSFG IT P + +A+ +A RAAEKLR+ + Sbjct: 238 GVSCMSLETAPAAKKQIACTRSFGHPITTLPPLIEAVSEFATRAAEKLRAGGLRAGALHV 297 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 F+ TSPF +Y +A ++L P+ D++ ++NAA L +I+Q G++ KAGVML D Sbjct: 298 FVHTSPFRPGRRFY-ETAVIQLQPPSSDTKALVNAAVHGLRSIYQPGYQLSKAGVMLQDL 356 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ----WQMKRAM 406 V Q +L P +LM MD +N + G+GT++ A G+ +Q W+M++ Sbjct: 357 CPTEVQQGDLLFQ-EPCRDQSKLMEAMDKINKRFGKGTVHVASTGVPEQDESGWRMRQER 415 Query: 407 LSPRYTTRSSDLLRVK 422 +PRYTT+ ++ + Sbjct: 416 RTPRYTTKIDEIPIAR 431 >UniRef50_D1C0B2 DNA-directed DNA polymerase n=2 Tax=Actinomycetales RepID=D1C0B2_XYLCX Length = 430 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 110/406 (27%), Positives = 171/406 (42%), Gaps = 20/406 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+A CE RP+L G PV+V G V+A EA+ GV+ P L Sbjct: 23 IMHVDMDAFFALCELARRPELRGLPVIVGGRGRGVVLAATYEARVFGVRSAMPMVSAMRL 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDFG 120 + V ++ Y D+S VM+T+ E++P VE SIDEAF D++G R T G Sbjct: 83 CPQA--VIVPPDHRRYTDVSRSVMATMAEITPIVEQISIDEAFLDVSGARRRLGPPTVIG 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +RA V +T VGIA+ K LAKLA+ AK L E + LP Sbjct: 141 ARLRAHVQAVHGVTCSVGIAKNKFLAKLASTHAKPDGM------LLVPDEASVPFLRTLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEE 239 V +WG+G + L GI +V LADTD+R ++ V G + Sbjct: 195 VGALWGVGEKTEAVLARWGITSVAQLADTDVRTLQAAVGVVHGAHLHDLAWGRDPRPVVP 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +FG D ++ + + A + R + R ++ ++T+ F Sbjct: 255 TERER-SIGNETTFGSDQHDLAAVEARLLELCDKVAARCREQGVVTRTVALKVRTNDFR- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ--GVAQ 357 + S L PT +RD+ A L A+ G + GV + + Q Sbjct: 313 -----TLTRSRTLDGPTDVARDLYRVARELLAAVDLRGLPVRLVGVRAENLQERAGTAQQ 367 Query: 358 LNLFDDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 L L + + RP + + +D + + G ++ G+ Q Sbjct: 368 LTLDEAASERPQAHREAELALDAVRERFGTRSIGLGAGGVASARQR 413 >UniRef50_A6CAV0 DNA-damage-inducible protein P n=2 Tax=Planctomycetales RepID=A6CAV0_9PLAN Length = 388 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 165/390 (42%), Gaps = 20/390 (5%) Query: 7 VNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 ++AFYAS E P+L G+P++V + G V A N A+ GV P + L + Sbjct: 1 MDAFYASIEERDHPELQGQPIIVGGRAEHRGVVSAANYPARKFGVHSAMPMKTARQLCPQ 60 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFGREI 123 F YA++S + + +P VE S+DEAF D++G + + + I Sbjct: 61 AH--FFPVRMSDYAEVSQSLQKIFRKYTPLVEPLSLDEAFLDVSGSQLLFGNGREIAASI 118 Query: 124 RATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDD 183 + V L VG+A K LAK+A+ A K + + ++ ++ + LPV Sbjct: 119 KQEVRHSLQLIASVGVAPNKFLAKIASDADKPDG------LVVVEPDKIQEFLDPLPVSR 172 Query: 184 VWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPT 243 VWGIG+ +++ + +GI+T+ + + + + + F +G + Sbjct: 173 VWGIGKMATQRFNRLGIQTISQVRVLEPKILTELFGEQGLHLWNLSQGLDERAVIPERQA 232 Query: 244 KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPY 303 + I +F + D +R + + +LR + I I+ F+ Sbjct: 233 -KSISRETTFSSDVNDLEILRIILMDLVEDVSRRLRKNKLRGKTIQLKIRYDDFS----- 286 Query: 304 YGNSASVKLLTPTQDSRDIINAATRSLDA-IWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 + S+ + PT +R+I +A LD + + + GV + F S Q +LFD Sbjct: 287 -TFTRSITVSQPTDLTREIEQSALLMLDQKLPERPLSIRLIGVGVTGFQSGSQHQKSLFD 345 Query: 363 DNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + + +L V D + ++ G ++ Sbjct: 346 E-EDQQKFSRLDQVKDQIASRFGSNSIIRG 374 >UniRef50_A5CQW8 DNA polymerase IV n=18 Tax=Actinobacteria (class) RepID=A5CQW8_CLAM3 Length = 430 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 109/410 (26%), Positives = 173/410 (42%), Gaps = 23/410 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+A+ E + RP+L G PV+V + G V + EA+ GV+ P + Sbjct: 23 ILHIDMDAFFAAVELLERPELRGTPVIVGGSSGRGVVTSATYEARRFGVRSAMPMAQALR 82 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDF 119 L + V+ + E YA S VM +++P VE SIDEAF D+ G R + Sbjct: 83 LCPQATVI--GGHMEKYAHWSRVVMGIFRDVTPLVEPLSIDEAFLDVAGARGLFGSPAEI 140 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G IR V T LT VG A TK +AKLA+ K + + + AL Sbjct: 141 GAMIRRRVHAETGLTCSVGAASTKFVAKLASTRCKPDG------LLVIPAAETLPFLHAL 194 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLE 238 PV +WG+G+ + L G++TV D+ADT + ++ R G ++ Sbjct: 195 PVGALWGVGKTTEEALLRRGLRTVADIADTPLPALQSMLGESAGARLHDLSWGRDPRRVS 254 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + +F + +TD +R+ + A R AE+LR R +S ++ S F Sbjct: 255 THREE-KSMGHENTFHDDVTDPEIVRRELLGQATRVAERLRRAGLTARTVSLKLRYSDFR 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + S L PT +R I + + + + G R + GV + Sbjct: 314 ------TITRSRTLSEPTDVARRIYDEIRDVYEQVARPGDRIRLVGVRAEQLDDADNRAV 367 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLS 408 L+D G + +D + GRG + A + KRA +S Sbjct: 368 ALWD---ADEGWREAERTVDQAAQRFGRGAIGPASLLRKP--GAKRATVS 412 >UniRef50_D0Z2K2 Error-prone repair protein UmuC n=5 Tax=Photobacterium RepID=D0Z2K2_LISDA Length = 430 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 167/425 (39%), Positives = 239/425 (56%), Gaps = 6/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D FY SCE +F P L GKP+VVLSNNDGC +A + +AKALG+ G PWFK + Sbjct: 8 VWALVDAKNFYCSCEQLFDPSLVGKPLVVLSNNDGCCVAISQQAKALGIVRGVPWFKIQR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV SSNY LYADMS R + L SP VE YSIDEAF L G +L D+G Sbjct: 68 EAIQQGVQVRSSNYTLYADMSRRFIEELSRFSPHVEQYSIDEAFIRLDGF-QLNELADYG 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REIR T+L+ L V VGI T TLAKL NHAAK +++Q GV+ + R++ L+ P Sbjct: 127 REIRTTILKNIGLPVRVGIGATPTLAKLGNHAAKVYEKQVRGVIQIDTEHRRQWLLERTP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + D+WGIG + + +L GI+ LA D IR+ +NV L RTV EL+ C+ + Sbjct: 187 IQDIWGIGAKTATRLRTAGIQNGWQLAQQDSIDIRRLWNVTLARTVLELQQISCISPGDV 246 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +++I+ SR+FG+ I + A+ + RA EKLR + + F++T+ Sbjct: 247 EEKRKQILSSRTFGQGINQLDELNAALAFHCQRAGEKLRKQQSQTGVVGVFLRTNKHKSL 306 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGVAQL 358 P + SA + L++ TQD+ I+ A L+ I++ G+ Y K GV+L QL Sbjct: 307 -PQHHRSAVMPLISATQDTYRILEVAQALLNEIYRGGYEYYKVGVILEQLTDVTDDAIQL 365 Query: 359 NLFDDNAPRP-GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 ++FD +A +LM V D +NA+ + + A W M++A S R+TTR + Sbjct: 366 DMFDSSALYESKRRELMAVADRVNARY-KNGIKPASIISSTNWHMRQAHRSNRWTTRLDE 424 Query: 418 LLRVK 422 L + Sbjct: 425 LPIAR 429 >UniRef50_Q30X29 DNA-directed DNA polymerase n=8 Tax=Proteobacteria RepID=Q30X29_DESDG Length = 492 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 182/441 (41%), Positives = 247/441 (56%), Gaps = 20/441 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D N+FY SCE VFRPDL +PVVVLSNNDGC+IAR+AEAKALG+ MG PWFK + Sbjct: 53 LYALVDCNSFYVSCERVFRPDLVRRPVVVLSNNDGCIIARSAEAKALGIPMGAPWFKVRR 112 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG--VRNCRDLTD 118 GV FSSNY LY DMS+RVM LE P V +YSIDEAF L + Sbjct: 113 HAESAGVTVFSSNYALYGDMSSRVMRVLERFCPDVHVYSIDEAFMRLDSLIMPPGMSPER 172 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK----------KWQRQTGGVVD--- 165 + +R V +RT + V VG+ TKTLAKLAN +K + GV + Sbjct: 173 YAACLRREVYRRTGIPVSVGLGCTKTLAKLANRLSKQQNAGARAMVPAAFRYAGVFNFGA 232 Query: 166 LSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERT 225 +++ + L+ L V DVWG+G R + +L GI+T L D +R++ +V T Sbjct: 233 VTDPDVMDALLETLDVTDVWGVGARHAGRLRTWGIRTARALRDAPDDRVRRYMSVTGLHT 292 Query: 226 VRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYC 285 V ELRG CL L++ P+++ ++ SRSFG +T M +A+ +Y RAAEKLR E Sbjct: 293 VLELRGISCLPLDDAPPSRRSVVSSRSFGTLVTHKEHMLEAVTAYMTRAAEKLRREQLEA 352 Query: 286 RFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGV 345 + I T + P Y +SA V+L PT + +I A L++IW+ G+RYQKAGV Sbjct: 353 HCVGVMISTPRH-GDGPRYADSAQVQLAVPTSHTPQLIVRARALLESIWRDGYRYQKAGV 411 Query: 346 MLGDFFSQGVAQLNLFDDNAPR----PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 ML S Q+++ +LM D +NA+ GRGTL +A G+ + W Sbjct: 412 MLSGLESAVSRQVSMLPALQGTGRGLERGRRLMAAADAVNARFGRGTLEYAAAGLGRPWS 471 Query: 402 MKRAMLSPRYTTRSSDLLRVK 422 MK+ LSPRYT+ L V+ Sbjct: 472 MKQEHLSPRYTSDWKKLPLVR 492 >UniRef50_A4ECH9 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECH9_9ACTN Length = 417 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 107/400 (26%), Positives = 178/400 (44%), Gaps = 24/400 (6%) Query: 4 LCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQKDL 61 L D++AF+AS E + P+ GKP++V + + G V + EA+ GV P + + L Sbjct: 28 LMDLDAFFASVEMLDHPEWRGKPLIVGGDADSRGVVSTCSYEARRFGVHSAMPSAEARRL 87 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDFG 120 + + +++ Y ++S +VM+ L + +PRVE SIDEAF D+T G D Sbjct: 88 CPQA--IWTHGHFDRYREVSAQVMAILADETPRVERVSIDEAFIDITPGRFAPEDPLQVA 145 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R I V +T +G+ KT+AK+A+ K + + + +++ ++ALP Sbjct: 146 RRISDRV-AALGVTCSIGVGCNKTVAKIASERDKPFG------LTIVRPGTEQRFLAALP 198 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + GIGR ++L M I T+ +L+ + F V ER + G ++ Sbjct: 199 VSAMSGIGRSAEERLRRMRIYTLGELSRAPESTLASIFGVNGERMRQRALGLEISEVTSL 258 Query: 241 APTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + + R+F + +T+ + AI +LR + ++ +K S Sbjct: 259 DEEREVKSVSNERTFAKDLTERGDIEAAIALLGESVGRRLRRQGLTGATVTLKLKYS--- 315 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 G +A +L PT D + A LD IWQ G + AGV + DF QG Q Sbjct: 316 ---YGSGRTAQRRLPHPTDDENIFVAVALELLDKIWQKGMHVRLAGVGMSDFDHQGGIQT 372 Query: 359 NLFDDNA----PRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 +LF + L +D + K G L F Q Sbjct: 373 DLFCEIDGRGAQSSDRRDLSVAIDAVRDKFGDTALSFGRQ 412 >UniRef50_A9W7Y3 DNA-directed DNA polymerase n=10 Tax=Rhizobiales RepID=A9W7Y3_METEP Length = 478 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 186/426 (43%), Positives = 235/426 (55%), Gaps = 10/426 (2%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N+FY SCE VF L PV+VLSNNDGC IAR EAKALG+KMGDP+FK + L Sbjct: 54 ALIDGNSFYCSCERVFDAKLARVPVIVLSNNDGCAIARTPEAKALGIKMGDPYFKIRGLC 113 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 GV FSSNY LY DMS R+ + + +P VEIYSIDE+F DLT RD R+ Sbjct: 114 EHQGVRVFSSNYTLYGDMSARINAIYRDATPDVEIYSIDESFLDLTAFVR-RDRVALARD 172 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 IRATV T + VGI TKTLAKLANH AK + GV DL+ + L V Sbjct: 173 IRATVRAWTGIPTCVGIGPTKTLAKLANHIAK-TVPELDGVCDLTEPAAYEHWLCRLHVG 231 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 ++WG+GR KL+AMGI TV DL D D R +RK VV ER + ELRG CL L+ Sbjct: 232 ELWGVGRASLPKLEAMGIDTVADLRDIDPRPVRKALTVVGERMIHELRGVSCLGLDLVPA 291 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 ++ +RSF R+T+ + QA+ ++A R EKLR E I+ F TS EP Sbjct: 292 RRKGCAVTRSFSGRVTERAELEQAVAAHAIRLGEKLRREGLGTDHITVFYHTSEHDRGEP 351 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ----AGHRYQKAGVMLGDFFSQGVAQL 358 S V L T D+ +I AA + W+ RY KAGV+ D +Q Sbjct: 352 MRSVSTVVTLPEATNDTLALIPAALHGMARTWREQGNPPWRYSKAGVVTVDLVPLAASQR 411 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ---WQMKRAMLSPRYTTRS 415 L R +++LM +D NA+ GRG++ A G+ QQ W K M +PRYTTR+ Sbjct: 412 ALIGRLD-RERADRLMGALDACNARFGRGSVVPARAGLAQQRRTWTTKFEMRTPRYTTRA 470 Query: 416 SDLLRV 421 +L Sbjct: 471 DELPVA 476 >UniRef50_C0YV48 Probable RumB/ImpB like DNA repair protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YV48_9FLAO Length = 423 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 145/411 (35%), Positives = 229/411 (55%), Gaps = 5/411 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N F+ SCE PDL G+PVVVLSNNDGCV++R+ EAK LG+ M P FK K+ Sbjct: 1 MYALVDCNNFFVSCERTLDPDLEGRPVVVLSNNDGCVVSRSKEAKDLGIPMAAPAFKYKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 LF++ V FS+ +ELY S +V++ + E+YSIDE F DLTG + D+ ++ Sbjct: 61 LFQKHDVKSFSAKFELYNYKSQQVINIAKSYVLDHEVYSIDELFLDLTGFK-YIDIYEYC 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +I+ + + + V +GIA TKTL K+AN K++ GV L E+ K + L Sbjct: 120 LKIKEEIKDKESIPVSIGIAPTKTLCKVANRIVKEFPENFNGVYILDTPEKIEKALKWLN 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR++ K++ G+ DL ++RK + R + EL+G L+L+ Sbjct: 180 IGDVWGIGRRLAAKMNDSGVYKAWDLLQKPEMWVRKIMGIHGVRMINELKGIRQLELDA- 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K+ I +RSF + +T+ +R+ + ++ +E+LR ++ C+ I+ F++T+ F + Sbjct: 239 PSPKKSIAVTRSFMQMLTNKEEVRERVETFGMYCSERLRKQNTCCKMITVFVQTNRFRKD 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N+ + L PT S I +AI++ G Y++AGVM+ DF + Q++L Sbjct: 299 LPEYKNAMTRILSNPTNSSILIGRVVNELFEAIYREGFHYKRAGVMVNDFVPEDQRQISL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 F+++ +M MD +N K G+ + + RA LSP Y Sbjct: 359 FEEDIQNQHL-PVMKAMDAMNRKFGKDKVRLGSMSGDNTFG--RAKLSPEY 406 >UniRef50_P58965 DNA polymerase IV n=29 Tax=Clostridia RepID=DPO4_THETN Length = 384 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 163/362 (45%), Gaps = 19/362 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E P+ GKPV+V + G V + EA+ G+ P + K Sbjct: 5 IIHVDMDAFFASIEQQDNPEYRGKPVIVGGLSGRGVVSTCSYEARKYGIHSAMPMYMAKK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + + Y ++S ++ L +++P VE SIDEA+ D+T V + D Sbjct: 65 LCPQG--IFLPVRRKRYEEVSEQIFRILYDITPFVEPVSIDEAYLDVTHVDK--NPEDIA 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 EI+ V T LTV VGI+ K LAKLA+ K + + + +++ LP Sbjct: 121 LEIKKRVKDATGLTVSVGISYNKFLAKLASDWNKPDG------LMVITEDMVPEILKPLP 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V V GIG + ++KL ++GI+TV DL + + F +RG +E Sbjct: 175 VTKVHGIGEKSAEKLRSIGIETVEDLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETM 234 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I ++ + + + Q + ++ +E+L E YCR ++ IKT+ FA++ Sbjct: 235 REI-KSIGKEKTLEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVKIKTADFAVH 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + S + + S DI A L+ W+ + G+ + + QL+ Sbjct: 294 ------TKSKTVDKYIRFSEDIYEVAKGILEE-WKLEQYVRLIGLSVSNLSPVKYEQLSF 346 Query: 361 FD 362 D Sbjct: 347 LD 348 >UniRef50_D1R5W7 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W7_9CHLA Length = 421 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 241/422 (57%), Gaps = 7/422 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D N FY SCE + P L KPV+VLS NDGCVI+R+ EAK LG+KMG+P+FK K+ Sbjct: 4 FVLADCNNFYVSCERMLHPKLEEKPVIVLSQNDGCVISRSQEAKQLGIKMGEPFFKVKEY 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R V+ +SSNY+LY D+S RVM++L + +P ++IYSIDEAF + ++ Sbjct: 64 CERAKVIVYSSNYQLYGDISERVMNSLSQFAPEMQIYSIDEAFLKFPITLSDEEMFAECM 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ + + + + +GIA TKTLAK+AN AK+ + GV L+ + ++ P+ Sbjct: 124 RIKKLIKKWVGIPISIGIAPTKTLAKVANSLAKQN--RDLGVFSLNEPLSREAILKEYPI 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +DVWGIGRR+SK+L +GI TV D F+RK VV ER + EL+G L LEE + Sbjct: 182 EDVWGIGRRLSKRLKGIGILTVWDFIQLTPYFVRKTMGVVGERMLLELQGISALDLEESS 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 P KQ I SRSFG ++TD + +A+ ++ ++A KLR + QY + +++ F+ + Sbjct: 242 P-KQSITFSRSFGRKVTDISELGEALATFVSKACVKLRKQKQYAAALLVYLQF--FSQDG 298 Query: 302 PYYGNSASV-KLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + +PT D+ ++I A + L ++ +Y+K GV+L D S +L Sbjct: 299 ESLQGNHMIYSFPSPTDDTIEMIAATKQCLTKLYIDKKKYKKCGVILLDLKSAEQFMPDL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F P +Q+M MD LN + + T++ G GI Q W+ + SP TT L Sbjct: 359 F-QKGPDIKRQQVMRAMDKLNTRLKKRTVFLGGTGIHQDWKSRSDQRSPYNTTSWDHLPI 417 Query: 421 VK 422 VK Sbjct: 418 VK 419 >UniRef50_B9Z6P1 DNA-directed DNA polymerase n=2 Tax=Proteobacteria RepID=B9Z6P1_9NEIS Length = 435 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 178/423 (42%), Positives = 248/423 (58%), Gaps = 7/423 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FA D N FYA+CE VF P L G+PVVVLSNNDGCV++R+AEAK LGV MG P+F K Sbjct: 16 FAQVDCNNFYAACERVFNPALAGRPVVVLSNNDGCVVSRSAEAKRLGVPMGAPYFTLKGQ 75 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R GV FSSNY LY D+SNR M L + E+YSIDE F DL+G + R Sbjct: 76 LERQGVAVFSSNYALYGDLSNRAMRLLAGYARAQEVYSIDECFLDLSG---EAEPLRLAR 132 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL--MSAL 179 +R +LQ L VG+ +KTLAKLANH AK+ + GV+DL +L+ L + + Sbjct: 133 RLRDALLQGLGLPACVGLGPSKTLAKLANHLAKQ-EAALEGVLDLGSLDATALLQRLEPV 191 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V++VWGIGRR+ ++L GI + LA+T+ ++++ F +V R ELRG CL LE Sbjct: 192 AVEEVWGIGRRLGERLRLAGIGSARQLAETERDWLQRRFGLVTARIADELRGVSCLALES 251 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ ++ +RSFG ++T +++A +A+R AE+LR + F+ I+ S Sbjct: 252 LLEPRRSVMSTRSFGRKVTALAELQEAAAMHASRVAERLRRQGSLAHFLRVGIR-SGVPG 310 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 S +V LL P+ DSR + AA +++ +WQ G RY KAGVM + G Q + Sbjct: 311 WGRGGDASETVALLPPSNDSRVLARAAQQAVARLWQRGVRYHKAGVMAFELVDAGQVQAD 370 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LF + S +LM MD +N + GRGT+ +G +Q W+MK+ LSP YTTR D+ Sbjct: 371 LFAGDPLDAKSARLMQAMDAINQRMGRGTVRLLAEGTKQPWRMKQDHLSPCYTTRWDDIP 430 Query: 420 RVK 422 VK Sbjct: 431 VVK 433 >UniRef50_D0KZ56 DNA-directed DNA polymerase n=12 Tax=root RepID=D0KZ56_HALNC Length = 439 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 205/424 (48%), Positives = 276/424 (65%), Gaps = 7/424 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF P L +PVVVLSNNDGC +AR+AEAKALG+ MG PWF+ + Sbjct: 17 VFALVDGNNFYVSCERVFNPALEARPVVVLSNNDGCAVARSAEAKALGIAMGQPWFQIQS 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + G++ SSNYELYADMSNR+M L + SPR E+YSIDE F DL G+ DLT Sbjct: 77 MAQSHGLIALSSNYELYADMSNRMMRILADFSPRQEVYSIDECFLDLRGM--DVDLTLLA 134 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER--QRKLMSA 178 +R V Q + VG+GI ++KTLAKLANH AKK Q Q GV DL+ LE Q +LM+ Sbjct: 135 HGMRQRVAQWIGIPVGIGIGESKTLAKLANHLAKK-QPQWQGVCDLTTLEESAQDRLMAC 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 + V DVWG+GRR+ ++L+A GI T LDL D I++ F+VVL RTVREL+G CL LE Sbjct: 194 VDVGDVWGVGRRLKEQLNARGIVTALDLKRADPVIIQRQFSVVLARTVRELQGISCLPLE 253 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 +Q+II SRSFG+ + P +RQAI ++ +RAAEKLR++ + + FI+TSPF+ Sbjct: 254 SMVAPRQQIIVSRSFGKPVWYLPELRQAITAHMSRAAEKLRTQASVAQMVQVFIRTSPFS 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-AQ 357 P+Y ++ L + D+R ++ A + L I++AG+ YQK GV+L D +G A+ Sbjct: 314 A-RPFYSQGITLPLAAASDDTRLLVKIAQQGLTRIYRAGYDYQKVGVLLMDIQPKGQGAR 372 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSD 417 +LF D ++QLM +D++NA+ G+ TL AG+G Q W MKR +P YTT Sbjct: 373 TDLFHDAQHDRRTDQLMQTLDSINARMGKHTLKLAGEGFVQPWAMKRNRHTPAYTTNIRQ 432 Query: 418 LLRV 421 L R Sbjct: 433 LARA 436 >UniRef50_A5GPY7 Bacterial UmuC protein homolog (SOS-regulated protein) n=14 Tax=Cyanobacteria RepID=A5GPY7_SYNR3 Length = 426 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 174/421 (41%), Positives = 249/421 (59%), Gaps = 6/421 (1%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FYASCE +F P L G+PVVVLSNNDGC++AR+ EA+ LG+ MG P+F+ D Sbjct: 6 ALIDCNNFYASCEQLFDPALQGRPVVVLSNNDGCIVARSREARQLGIAMGTPYFQVADRL 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R VV SSNY LY DMS RVM+ L++ P +E+YSIDEAF L + +L+ + E Sbjct: 66 RDQQVVVRSSNYALYGDMSQRVMALLKQRVPELEVYSIDEAFARLPALPA-HELSSWAAE 124 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +R V Q+ L + +G+A +K LAKLAN AK+ +TG L + + ++ + V+ Sbjct: 125 LRVLVRQQLGLPIALGMAPSKVLAKLANRLAKRDPARTGVCNLLLEPQLPDR-LAEVAVE 183 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 D+WG+GRR+++ G+ T LDLA D IR+ + VV R +ELRG CL LE Sbjct: 184 DLWGVGRRLARWCRLRGLATALDLAQADSALIRQGWGVVGLRLQQELRGISCLALESEPA 243 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 KQE SRSFG + D S+R+A+ ++ R AEKLR + Q ++ F++TSPFA Sbjct: 244 AKQETCVSRSFGTAVLDRLSLREAVAAHVVRGAEKLRRQGQRASRLTVFVRTSPFAA--G 301 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 +Y NS SV L T D+ ++ A +D +++ G+ +QKAGV+LG Q Q +L Sbjct: 302 FYANSISVSLPLATADTAVLLQRALPLVDQLFRHGYAFQKAGVLLGQLQPQEHLQHHLLV 361 Query: 363 D--NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 +L+ +D LN + G GT+ +A G++ W M+R LS +TT +DL Sbjct: 362 PCSPQQLRRRSRLLQAVDGLNQRFGTGTVQWAAVGVEPDWCMRRQHLSAHFTTSKADLPM 421 Query: 421 V 421 V Sbjct: 422 V 422 >UniRef50_C6XEM8 DNA-directed DNA polymerase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEM8_METSD Length = 425 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 191/424 (45%), Positives = 254/424 (59%), Gaps = 6/424 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL DVNA Y SC VF P L GK +VL+NNDGC ++RN AK LG+KMG+PWF+ K Sbjct: 5 IALVDVNAMYWSCHRVFNPSLEGKAGIVLTNNDGCAVSRNDLAKQLGIKMGEPWFQIKAN 64 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + VV FSS Y LYA MS R + L E SP EIYSIDE F DLTG+R + G Sbjct: 65 PKYKDVVAFSSTYALYASMSKRFTNLLAEFSPHQEIYSIDECFLDLTGMRGRQ--IQRGL 122 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSAL 179 IR + L V VGI TKTLAKLANH AKK+ GVVDL+ E + + + L Sbjct: 123 NIRHRIKNEVGLPVCVGIGSTKTLAKLANHIAKKF-PHFEGVVDLNEWEPHQMVAMFTML 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V VWG+GRR +++L A+ +K+V+DL D FIR+ F+VVLERTVREL GE CL LE Sbjct: 182 DVGQVWGVGRRYAERLAALDMKSVMDLKLADPEFIRQQFSVVLERTVRELNGEACLDLEA 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K++II SRSFG +I D P++ A+ S+ +RAAEKLR ++ Y IS ++T+ F Sbjct: 242 VREDKKQIISSRSFGRQIEDLPALVNAVSSFVSRAAEKLRLQNSYAGVISVEVETNRFNP 301 Query: 300 NE-PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + YG A ++L PT D+ + + A L I++ G RYQ+AG+ML + G Q+ Sbjct: 302 DPYSKYGKRACIRLPAPTDDTLKLNHVAQWILKKIYKPGFRYQRAGIMLDEIVPAGGGQV 361 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 +LF + L V+D +N++ G+ + G W MK+ +LSP YTTR DL Sbjct: 362 DLFGYQPAIGKRDNLSAVVDEINSRMGKNAVRVGTMGFSMDWDMKQDLLSPFYTTRIEDL 421 Query: 419 LRVK 422 + Sbjct: 422 PVAR 425 >UniRef50_C7LWM3 DNA-directed DNA polymerase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM3_DESBD Length = 412 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 95/416 (22%), Positives = 167/416 (40%), Gaps = 22/416 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + D++AF+ S E P L GKPVV+ + G A + EA+ G++ P + K Sbjct: 14 VILHLDMDAFFTSVEQADDPLLQGKPVVIGQSLRGVASAASYEARKYGIRSAMPIVQAKK 73 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-F 119 L V Y ++S ++M+ + L P VE S+DEA+ D++G R + Sbjct: 74 LCPHA--VFLPGRMSRYREISVKIMNIMRALCPLVEQASVDEAYADISGTRRIFGPPENI 131 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R ++A +L T+LT VGIA K LAK+A+ K G + + L Sbjct: 132 ARRLKAEILAATNLTCSVGIAPNKFLAKIASDWNKP------GGLTFIPPADVPAFLRDL 185 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G++ ++L +G+ T+ + + + G + Sbjct: 186 PLGRIPGVGKQFQEELRRIGVTTIPHVLAHPRTYWNELMGKRGAFLHDRACGIDDSPVVP 245 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + + D + + + A R +LR + ++ IK F+ Sbjct: 246 GSDP-KSCSAENTLDRDTLDRTLLERWLLIQAERIGRELRGLGKKGLTVTLKIKFQDFS- 303 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L PT + +I AA L A + + G + +F Q Sbjct: 304 -----SITRSRTLARPTDITTEIFEAARMLLTA-EKLPRPVRLIGTGVSNFR---FVQAE 354 Query: 360 L-FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 L +A R S+QL MD + K G ++ A I++ + +LS + T Sbjct: 355 LPLMPDAGRKRSQQLDQAMDRIRDKFGNKSILRAEAAIRESDAVN-DLLSQKNRTS 409 >UniRef50_C9LED2 UmuC protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LED2_9BACT Length = 422 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 162/423 (38%), Positives = 239/423 (56%), Gaps = 3/423 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+AL D N+F+ S E F P L GKPV VLS+NDG ++A EAK +G+K GDP FK +D Sbjct: 1 MWALADCNSFFCSVEKAFHPGLRGKPVCVLSSNDGNIVALTPEAKKIGIKRGDPVFKVRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V FS+N +LYA MS RV + L + VE YSIDE+FC L G D+ +F Sbjct: 61 LISCHNVKLFSANMKLYAAMSRRVTNMLRKRIHHVENYSIDESFCCLDGYEQLYDMENFM 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 REI V T + + VGIA +KTLAK+ + AK+++ V + E++RK ++ + Sbjct: 121 REIVENVRLWTAIPMSVGIAPSKTLAKIGSKFAKQYKGYRS-VCLIDTEEKRRKALALVD 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + DVWGIGRR KKL I T L AD ++R F + + T +EL G C+ E Sbjct: 180 LSDVWGIGRRTLKKLAYYNIHTPLAFADKSENWVRSRFTLPMIHTWKELNGVDCIDTTEV 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I SRSFG +T+ ++ ++ +A+ A KLRS+ CR ++ FI T+ F + Sbjct: 240 I-AKQTICTSRSFGNMVTELEDLKASVAHFASSCANKLRSQSSLCRSVTVFIATNRFRED 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N + L T D+ +I N A L +++ G +Y+K+GV+LGD S +L Sbjct: 299 LPQYNNMLTYTLPIATADTLEITNTAIAILQELYRPGIQYKKSGVVLGDISSGKAISQDL 358 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDLL 419 FD + R QLM +D +N + G+ T+ +GI +Q+W K +P Y T ++++ Sbjct: 359 FDHISNRSERHQLMHFIDNINQRYGKKTILLGIEGIGKQKWTAKCEQRTPNYLTDINEIM 418 Query: 420 RVK 422 ++ Sbjct: 419 TIR 421 >UniRef50_B2FJL0 Putative UV protection and mutation protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FJL0_STRMK Length = 429 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 178/429 (41%), Positives = 240/429 (55%), Gaps = 18/429 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FY S E F P L G+PV V S+ DGCVIAR+A +K LGV MG P + Sbjct: 11 IALQDGNNFYCSVEASFDPRLRGRPVCVASSGDGCVIARDALSKKLGVPMGAPIHQIPPN 70 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R + S+N+ LY D+S R+ S L +L P +E YSIDE F DL G+ + +D Sbjct: 71 VR-WQITFRSANFALYGDISTRIASILRDLFPAIEQYSIDENFIDLAGIPS-KDHERLAA 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E RA +L+ T + VGI TKTLAKL+N AK GVV + + PV Sbjct: 129 EARARILKWTGIPSCVGIGPTKTLAKLSNKRAK---STVEGVVTTMPDDPA---LLTYPV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D WG+GR+++ +L A GI T DLA D+ +R + VV+ RT REL+G C LEE Sbjct: 183 EDDWGVGRKLTARLGADGILTAGDLAAADVDTLRSRYGVVMARTQRELQGISCADLEEHE 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++EI+ SR+FG+ IT + QAI ++A RA EKLRS + FI+T+PF N Sbjct: 243 AQRKEIMVSRTFGKDITSQTELMQAIATFAQRACEKLRSRQLQAAGVWVFIQTNPFKQNL 302 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y S S +LL P+ D+R+I+ A A+++ G+ Y+KAGV L D V Q +LF Sbjct: 303 PQYNPSKSFRLLMPSADTREILMVAQGLAKAMFRPGYGYKKAGVSLLDLIHMDVQQGDLF 362 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA--------GQGIQQQWQMKRAMLSPRYTT 413 S+ +M VMD N K GRG++ FA + W +KR MLSP YTT Sbjct: 363 AGIDQ--RSKAIMEVMDRTNQKFGRGSMGFAFTAWRPSGKTLEKPAWSVKRDMLSPAYTT 420 Query: 414 RSSDLLRVK 422 L+RV+ Sbjct: 421 DWKQLIRVR 429 >UniRef50_A5D243 DNA polymerase IV n=4 Tax=Clostridia RepID=DPO4_PELTS Length = 402 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 168/408 (41%), Gaps = 22/408 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 L D+N+FYAS P L GKPV+V + G V+A + EAKA GVK G + Sbjct: 5 ILLADMNSFYASVHQAMEPRLKGKPVIVGGDPARRHGIVLAASVEAKACGVKTGMTVREA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLT 117 L + + + Y + S R++ +++ SP VE +SIDEAF D++G Sbjct: 65 AALCPQG--IFLKPRHSHYINFSARIIRIMKDFSPLVEPFSIDEAFMDVSGCGLLFGSSL 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + +++A + + VG+ K LAK+A K G+ L + K+ Sbjct: 123 EIAVKLKARIKNEVGVLCSVGVGPNKLLAKMAAGMQKPD-----GLTLLDFPDVPVKIW- 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV +++G+G R+ K+L + I T+ DLA ++ +++ F +V G + Sbjct: 177 PLPVRELFGVGSRLEKRLRDLNIHTIGDLARYPLQVLKQKFGLVGHILHLSASGIDYSPV 236 Query: 238 EEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + + I + Y ++ I ++R R +S +K + Sbjct: 237 DPCSLERVRSIGHQITLPRDYWGYNEIKVVILELCEIVCRRVRLGGYAGRTVSLTLKDTD 296 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F S + + PT + ++ A + L W + GV L Sbjct: 297 FL------WLSRARTMNYPTASADEVYRVAVQLLHQHWPPWKPVRMVGVSLAGLVKNRAE 350 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKR 404 QL+LF + + +L D + + G ++ A +R Sbjct: 351 QLDLFGEA---ERARRLHAACDRIKDRFGEHSILRAVSLTPAGVLRER 395 >UniRef50_C0WCT4 DNA-directed DNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCT4_9FIRM Length = 397 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 160/394 (40%), Gaps = 21/394 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E + P+ +PV+V + G V + EA+ GV P + + Sbjct: 12 IMHVDMDAFFASVEQLDHPEYRNRPVIVGGLSGRGVVSTASYEARRFGVHSAMPMKEALE 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDF 119 + + Y Y ++S ++ E SP VE SIDEAF DLTG+ D+ Sbjct: 72 RCPKG--IFVEGRYGRYLELSQKIRQIFHEFSPLVEPLSIDEAFLDLTGMERLVGDIPAL 129 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G I+ + + T LT VG+A K LAKLA+ K + + ++ L Sbjct: 130 GLRIKERIKKETGLTASVGLAPNKFLAKLASDLKKPNG------LVIIRQSEAASRIAPL 183 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ ++GIG R + L GI+T+ DLA D F+ F E +R G + Sbjct: 184 PISRIFGIGARSASLLTRFGIRTIGDLAACDASFLSPLFGKNTETILRFAHGLDNRPVIP 243 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +Q + +F + + D+ + + + + + +LRS ++ +KT F + Sbjct: 244 -DEKRQSLGRELTFEKDLRDHAVILEILWNLSQEVGFRLRSAGLSGYTVTLKMKTQDFKV 302 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + + S+ P Q +I+ + GV + Q ++ N Sbjct: 303 H------TRSLSSDLPLQLDEEIMERVKILTRR-NPLRDPVRLLGVTVSHLVPQESSEQN 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 LF + Q +D L + G + Sbjct: 356 LFS---KSDRNTQRSLAVDALKKRFGETIIKKGA 386 >UniRef50_A5FU54 UMUC domain protein DNA-repair protein n=2 Tax=Acetobacteraceae RepID=A5FU54_ACICJ Length = 418 Score = 405 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 189/420 (45%), Positives = 235/420 (55%), Gaps = 8/420 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D N+FY S E F P+L +P+VVLSNNDGC IAR EAKALG+KMG+PW + Sbjct: 4 FGLIDGNSFYCSAEQAFAPELRSRPLVVLSNNDGCAIARTPEAKALGIKMGEPWHLFRKR 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 V SSNY LY DMS RV L E P+VE YSIDE F DL G+ DL F R Sbjct: 64 PESRAVEWRSSNYALYGDMSRRVYDVLTERVPQVEPYSIDEMFLDLDGIP---DLDRFCR 120 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 ++R V Q + VGI TKT+AKLAN AKK + GGV DL + E + + LP+ Sbjct: 121 DLRRDVRQIAKIPTCVGIGPTKTIAKLANKIAKK-ETALGGVCDLRDPELRARHYERLPI 179 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIG ++ KL A GI T+ D D R +R V R ELRG CL L A Sbjct: 180 AEVWGIGGQVGAKLAAAGITTIADFVRADPRAVRDMLTVTGARVQTELRGASCLPLSLMA 239 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 PT++ I SRSFG I +R+AIC++AARAAEKLR+E I+ F T+P + Sbjct: 240 PTRKGIAVSRSFGHMIDRPAELREAICTFAARAAEKLRAEGLEAGQITVFTHTNPHNGD- 298 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P+Y K+ PT D+ +I A R L A+W G+RY KAGVML D Q LF Sbjct: 299 PWYSAQRQGKI-EPTADTGLLIGEAIRLLRAVWHPGYRYFKAGVMLQDLAPA-RRQAVLF 356 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 S M MD +NA+ GRGTL A W +R LSPRYTT++ ++L Sbjct: 357 ASFDRDQ-SAAAMKAMDAINARFGRGTLRIASTATSPSWGARRQNLSPRYTTQAGEMLVA 415 >UniRef50_C0ZFX0 DNA polymerase IV n=6 Tax=Bacillales RepID=C0ZFX0_BREBN Length = 413 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 17/412 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + L D+ +FYAS E P+L KP+VV + G V+A AK+ GV + ++ Sbjct: 8 IVFLIDMQSFYASIEKGANPELRNKPIVVAGDPERRSGVVLAACPIAKSYGVVAAEALWQ 67 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDL 116 + R+ +V E+Y +S ++ E + +VE YSIDE F D+TG + D Sbjct: 68 AQQKCRQ--LVVVRPRMEMYIRISMQITRIFEAFTDKVEPYSIDEQFLDVTGSVHLFGDP 125 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 +IR V T + VGI + K LAK+A K ++ GV E + Sbjct: 126 LQMAAQIRQRVWMETGINCRVGIGENKVLAKMACDNFAK--KREEGVF-WLKRETLADTL 182 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP++ ++G+G R+ + MG+ + LAD + +H+ V E R G Sbjct: 183 WKLPIEKLFGVGSRMKRHFHRMGVYQIGQLADMRPAILTRHWGVNGEVLWRTAHGIDDSP 242 Query: 237 LE-EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + + +++ I + ++ + + R + +S + + Sbjct: 243 VALDSYDSQKGIGHHMTLPRDYHTASEIKVVLLELCEEVCRRARKKELMGSVLSVGCRGA 302 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 A G +KL T D+ + AA D WQ + GV LG V Sbjct: 303 DLAAGT---GFGRQMKLTEQTNDAMTLYEAACFLFDRHWQE-TPVRSIGVNLGQLVPDNV 358 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QLNLF D L MD + ++ G+ + A ++ +RA Sbjct: 359 VQLNLFTD---NHKRRSLAQAMDDIRSRYGQDAILRAASVLEAGQAKERARK 407 >UniRef50_UPI0000E87FBE DNA repair protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87FBE Length = 419 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 165/423 (39%), Positives = 237/423 (56%), Gaps = 8/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL DVN FY SCE +F P L KPVVVLSNNDGC+I+R+ EAK LG+KMG+P FK Sbjct: 1 MIALVDVNNFYVSCERLFNPYLINKPVVVLSNNDGCIISRSQEAKNLGIKMGEPLFKASA 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R+ V SSNY LYAD+S RVMS L + + EIYSIDE F D+ G N +D Sbjct: 61 IIRQHQVQVLSSNYPLYADISARVMSLLSDFTSTQEIYSIDECFLDMEGHENLQD---IA 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSA 178 R+I+ + + + V VGI TK LAKLAN AKK Q Q GV +SN +M Sbjct: 118 RKIKRLLWRYLRMPVCVGIGPTKVLAKLANRCAKK-QDQQSGVFIISNASASELNNMMDD 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L VD +WG+G+ ++ KL I ++LDL ++ ++RK F + +ER + EL G CL ++ Sbjct: 177 LSVDQIWGVGKALAVKLQKKSIYSILDLKQSNPTWVRKFFGINMERIIYELNGVSCLLID 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 K+ I CSRSFGE + DY + +A+ +++ RAA K RS++ ++ F+ T+PF Sbjct: 237 NQYVAKKGIRCSRSFGENVNDYIRLAEAVTTFSGRAALKARSQNTGTNAVTVFLSTNPFN 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 +Y ++ ++ L T + I+ AA L I++ Y K GV+L Sbjct: 297 KEHRHYQDAITMPLEQLTNQTNLIVKAALSGLRKIYKQKVTYSKCGVILNSLEELDKLSY 356 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 L L ++D +N K + +L+ A Q + W M+++ S Y+T S+L Sbjct: 357 PLISPI--HNRQANLTKIIDEINNKFDKNSLHIAFQPLYPSWDMRQSYRSQSYSTSWSEL 414 Query: 419 LRV 421 L V Sbjct: 415 LLV 417 >UniRef50_Q3AKE9 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q3AKE9_SYNSC Length = 424 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 175/422 (41%), Positives = 237/422 (56%), Gaps = 6/422 (1%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FYASCE P L G+PVVVLSNNDGC++AR+AEA+ALG++MG P+FK + Sbjct: 6 ALIDGNNFYASCEQSLDPALIGQPVVVLSNNDGCIVARSAEARALGIRMGTPYFKARREL 65 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 R VV SSNY LYADMS R+MS LE +E+YSIDEAF + RN DL + R+ Sbjct: 66 ERHNVVVRSSNYALYADMSQRMMSLLEAHCEELEVYSIDEAFGRIRRPRN-GDLQGWARQ 124 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 +RA Q L + +G+ +K AKLAN AK+ G+ DL + + + + ++ Sbjct: 125 LRARARQNLGLPIAIGLGASKAQAKLANRLAKQ-APDHAGMFDLGQCDNPDRWLETIAIE 183 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 DVWGIGR+++ GI L D +R VV R RELRG CL LE Sbjct: 184 DVWGIGRQLAHWCRLRGISNARHLRDMPSGELRAKCGVVGLRLQRELRGHACLPLELAPA 243 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 KQE SRSF IT + QAI +Y RAAEKLR + Q ++ + +TSPFA Sbjct: 244 PKQETCVSRSFSRPITSQEELHQAIATYVVRAAEKLRKQRQRAAALTIYTRTSPFAP--G 301 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD 362 +Y +AS +L P+ D+ ++ AA + I++ + KAGV+ S + Q +L Sbjct: 302 FYSQAASTQLDLPSNDTAVLLQAARPLVARIFRPHRQLAKAGVLTQHLQSHNILQTHLMV 361 Query: 363 DNAPRPGSEQ--LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 + ++ LM +D +N + GRGTL +AG G+Q W M+R LS TTR DL Sbjct: 362 PMSEEQQQKRECLMQTIDRINRRYGRGTLQWAGCGLQPSWLMRREQLSRAATTRLQDLPV 421 Query: 421 VK 422 VK Sbjct: 422 VK 423 >UniRef50_D0RPK3 Protein UmuC n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPK3_9RICK Length = 433 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 168/420 (40%), Positives = 249/420 (59%), Gaps = 3/420 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N+FY SCE +F P + PVVVLSNNDGCVI+R+ EAK +G+KMG+P+FK K L Sbjct: 14 IALVDCNSFYVSCERLFNPRINNLPVVVLSNNDGCVISRSVEAKKIGIKMGEPYFKVKHL 73 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V FSSNY LY D+S RVM L++ P +EIYSIDEAF DL+ + DL +F Sbjct: 74 IKSHKVQVFSSNYALYGDISRRVMHVLKKFCPTIEIYSIDEAFLDLS-LIKDEDLENFIS 132 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+R +L+ T + V +G+A+TKTL+K+ANH AKK ++ L++ + L+ P+ Sbjct: 133 ELRFIILKWTGIPVSIGVAKTKTLSKVANHIAKK-EKIGIKSFILNDEKEIDDLLKNFPI 191 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D+WG+GR+ISK + IK+ DL D R+I+K+ NV+ +TV ELRG C+ E + Sbjct: 192 EDIWGVGRKISKLYKSNNIKSAYDLKDASNRWIKKNTNVLGLKTVMELRGINCIGFESNS 251 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++ SRSFG+++ DY ++++++ ++ AAEK+R + Q + + FI+ SPF +E Sbjct: 252 NPRKNCCVSRSFGKKVLDYDTLKESVVAHCLNAAEKIRVDRQVVKSVIVFIRNSPFDKSE 311 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 ++ S V L P+ DS + +SL I+ G RYQKAGV+ +G LF Sbjct: 312 KFFSRSKKVDLPIPSDDSILLTKICIQSLKEIFLKGPRYQKAGVIFSGLSRKGKYDEGLF 371 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 + S+ LM +D N K GR + A G W+M+R S T+ L + Sbjct: 372 S-YEKKEKSQSLMKAIDKTNFKFGRNMITVADTGFCNNWRMRRGHSSKIDTSSYDFLPTI 430 >UniRef50_Q67QM6 DNA polymerase IV n=1 Tax=Symbiobacterium thermophilum RepID=DPO4_SYMTH Length = 361 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 160/361 (44%), Gaps = 19/361 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+AS E P L GKPV+V N+ G V + EA+ GV+ P + Sbjct: 7 VIHLDMDAFFASIEQRDNPRLRGKPVIVGGSPNSRGVVSTCSYEARRFGVRSAMPSREAL 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 L + V N+ YA + +V + + + +E SIDEAF D++G +D Sbjct: 67 RLCPQA--VFIRPNHAKYAAVGRQVRAIMRRFTDVIEPLSIDEAFLDVSG----QDAVRV 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 RE++ + HLT G++ K LAKLA+ K + + ER ++L+ L Sbjct: 121 ARELKEAIRAELHLTGSAGVSYCKFLAKLASDMQKPDG------LTVITWERAQELLPTL 174 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G + L A+GI T DL D +RKHF + + RG + Sbjct: 175 PVRKLWGVGPASEQALHALGIYTCGDLLAYDPDTLRKHFGKRADELILLARGIDPRPVVP 234 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + I +F TD + + + YA AE+LR + Y R ++ IK + F Sbjct: 235 YREA-KSIGEENTFPVDQTDREYLSRLLERYADNLAEELRRQGLYARTVTVKIKWNVFVE 293 Query: 300 NEP----YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 P + + S L PT D+R I A + G + + G+ + + QG Sbjct: 294 GGPKGGDFLQITRSQTLPMPTNDARTIGRVAREIFARVEWEGRKVRLLGLSVHNLVKQGE 353 Query: 356 A 356 Sbjct: 354 Q 354 >UniRef50_Q7USY7 DNA polymerase IV n=1 Tax=Rhodopirellula baltica RepID=DPO4_RHOBA Length = 396 Score = 402 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 169/411 (41%), Gaps = 22/411 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AFYAS E RP+L G+PVVV + G V A + EA+ G+ P + Sbjct: 1 MILHVDMDAFYASVEQRDRPELRGRPVVVGGSEGRGVVTAASYEAREYGIHSAMPGSRAI 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + YA + V +P V+ S+DEAF D++G + Sbjct: 61 KLCPHAD--FVRGRLDHYASVGRAVREIFHRFTPVVQPLSLDEAFLDVSGTIRLHGSPRE 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 G IR T+ + L VGIA K +AK+A+ K + R+ + Sbjct: 119 IGINIRETIRRELDLPASVGIAPLKFVAKIASDIGKPNG------FVEVPADGVREFLDP 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV +WG+G+ KL +G +T+ DL D+ ++ E G Q+ Sbjct: 173 LPVSRLWGVGKVGQTKLQRLGYRTIADLRVKDLDALKSQLGRWGEHLWNLANGIDRRQVV 232 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I R+F E ++D S+ + + + A +LR + I+ + F Sbjct: 233 -VDHLAKGIGHERTFAEDLSDIESLNAVVSYLSEQTARRLRRARRLASTITLKYRREDFQ 291 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGHRYQKAGVMLGDFFSQGV-A 356 S + KL TPT + +I+ A L + + + G+ LG Sbjct: 292 ------TFSRARKLSTPTDSTLEILQVAEELLLEMRSREPRSVRLLGISLGGLTDADAPK 345 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QL+LF + S ++ T+ D + K G+ +LY A QW ++ Sbjct: 346 QLHLFGEETGENASSKVDTLSDQIATKLGKHSLYRASS---HQWVDRKNTK 393 >UniRef50_B3E0C4 Nucleotidyltransferase/DNA polymerase UmuC n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0C4_METI4 Length = 421 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 238/422 (56%), Gaps = 9/422 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L D + FY SCE +F P L GKPVVVLSNNDGC+++R+ EAK LG+ MG P+F+ K+ Sbjct: 7 FCLVDCDNFYVSCERLFNPGLEGKPVVVLSNNDGCIVSRSNEAKLLGIPMGAPFFRWKEF 66 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 F++ GVV SSNY LY D+S R+M LEE +P VEIYSIDEA+ DL+ F R Sbjct: 67 FKQQGVVALSSNYALYGDISGRLMQLLEESAPCVEIYSIDEAWIDLSAHP---SPESFAR 123 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 E+R + + T + V +GIA TKTLAK+A+ AKK G+ L E + + L V Sbjct: 124 ELREKIRRWTGIPVTLGIAPTKTLAKVASKIAKK-TTALKGMNLLFGEEEIDQALRTLEV 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D++WGIG R++ KL GI +DL + D IR+ F+V+LERTV ELR C LEE Sbjct: 183 DELWGIGARLAAKLKERGISKAVDLKNADPFKIRRLFSVMLERTVWELRAISCFGLEENV 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 ++I+ S++FG+ + +R A + +A KLR +S F++ PF Sbjct: 243 SPPKQILSSQTFGQTLFSLDELRAATAHFVKESARKLRQFGLAAHQLSVFLRHGPF---- 298 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 P Y SAS + + P D ++ A L A+++ Y K+GV+L D Q Q + + Sbjct: 299 PGYIESASFRFMEPIGDVIGLLEKADSLLQALYKPQRAYTKSGVILFDLLPQSCHQASFW 358 Query: 362 DDNAPRPGSEQ-LMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 + L +++ L ++G+ TL + + + W+++ +P YT+R ++ Sbjct: 359 PPEEEKERKYATLSHLLEELPKQKGKPTLRVGTELLGENWRLRFQRKTPSYTSRWEEIPA 418 Query: 421 VK 422 VK Sbjct: 419 VK 420 >UniRef50_C6NU08 Error-prone repair protein UmuC n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU08_9GAMM Length = 424 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 160/424 (37%), Positives = 244/424 (57%), Gaps = 11/424 (2%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 AL D N FY SCE +F+P L GKPVVVLSNNDGC +AR+ EAKALGV MG P+F+ + L Sbjct: 4 ALVDANNFYVSCERLFQPRLEGKPVVVLSNNDGCAVARSNEAKALGVTMGAPYFQWEKLA 63 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 ++ G+V SSNY LY ++S R+M L + EIYSIDE+F ++ + + + Sbjct: 64 KQHGIVVLSSNYALYGELSARLMRLLGNQAVGQEIYSIDESFLEVP--VADAEADSWAQH 121 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDL--SNLERQRKLMSALP 180 +R + ++ L V VG+A TKTLAK+ NH AKK +R GV + +++R+ P Sbjct: 122 LRQQIRRQLGLPVCVGVAPTKTLAKVCNHWAKK-ERTAEGVCIWGDLDPQQRRQWFHETP 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V D+WG+GRR++ +L+A G+++ DLA TD R++R+H+ V L R +ELRG PCL LEE Sbjct: 181 VGDLWGVGRRLAARLEAQGVQSAGDLARTDSRWLRQHYGVALARMQQELRGVPCLSLEEV 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 +P +Q+I CSRSFG +T++ + +++ + R EKL + + + +++SPF Sbjct: 241 SPPRQQIQCSRSFGRAVTEFSDVLESLSLHTQRGIEKLHEQALWAGSVQVMVRSSPFR-- 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E +Y +A +L P++D R + A + +Q G YQK+G++L D +L Sbjct: 299 EGFYSGTAHRRLPEPSRDYRVLWEAVRSAAAEAFQPGVSYQKSGILLFDLQ-AQARTGDL 357 Query: 361 FDDNA-PRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ--QWQMKRAMLSPRYTTRSSD 417 F +E+L + + G+ TL G++Q W M+ SP Y + Sbjct: 358 FAVQEGGEERAERLQEALQRAQDRFGKHTLARGVGGLRQGRDWAMRSDRRSPSYLSDWWS 417 Query: 418 LLRV 421 L Sbjct: 418 LPVA 421 >UniRef50_P54560 DNA polymerase IV 2 n=8 Tax=Bacillales RepID=DPO42_BACSU Length = 412 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 169/413 (40%), Gaps = 18/413 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + L D+ +FYAS E P L +PV+V + G V+A AK GV ++ Sbjct: 6 VIFLVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWE 65 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-L 116 ++ V + Y D+S ++ + LEE + VE YSIDE F D+TG + Sbjct: 66 AQEKCPEA--VVLRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTP 123 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + + I+ +++ + VGI K LAK+A K + G+ L+ E + M Sbjct: 124 MEIAKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNK--NGIFTLTK-ENMKTEM 180 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV ++G+G R+ L+ MGI T+ LA + ++K + + G Sbjct: 181 WPLPVGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANGIDYSP 240 Query: 237 LEEFAPT-KQEIICSRSFGERITDYP-SMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + ++ I + + ++ + + + R+ + +S + Sbjct: 241 VSTSSLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNAGVMGQTVSVSCRG 300 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 + F G + VKL PT ++D+ A R W G ++ GV L S Sbjct: 301 ADFDWPT---GFNRQVKLAEPTNSTQDVYEAVRRLFLTFWD-GKPVRRLGVNLSQLSSDD 356 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 + QLNLF D A L VMD + + G + A +RA Sbjct: 357 IWQLNLFQDYA---KKMSLGYVMDGIKNRFGDTAIIRAASLTAAGQAFERAAK 406 >UniRef50_D1PC12 UmuC protein n=2 Tax=Bacteria RepID=D1PC12_9BACT Length = 461 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 190/462 (41%), Positives = 256/462 (55%), Gaps = 43/462 (9%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M L D N FY SCE VFRPDL GKPVVVLSNNDGCVIAR+ EAKALG KMGDP+++ K+ Sbjct: 1 MIGLADCNNFYCSCERVFRPDLTGKPVVVLSNNDGCVIARSEEAKALGYKMGDPFYQVKE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-------RNC 113 GV FSSNY LY +SNRVMS L SPR++ YSIDE+F + + Sbjct: 61 KLEAEGVAIFSSNYTLYGSLSNRVMSMLSHYSPRIDQYSIDESFFEADESMAKVFFREHA 120 Query: 114 RD--------------------LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAA 153 D L +G +I A VL+ + + VGIA+TKTLAK+ + A Sbjct: 121 EDHPTLFNKMTIDELSEKPDSLLHRYGSKISADVLRAVGIPISVGIAETKTLAKIGSKFA 180 Query: 154 KKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRF 213 KK+ + G + ER+ K +S PV+DVWGIGR+I++KLD MGI+T AD + Sbjct: 181 KKY-KGFQGCCLIDTDERRHKALSLFPVEDVWGIGRQIARKLDYMGIRTAAQFADKKESW 239 Query: 214 IRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFG-ERITDYPSMRQAICSYAA 272 +R HFN+ RT +EL GE C+ +EE P K+ I SRSF E ITD + +A+ ++A Sbjct: 240 VRSHFNITTLRTWKELNGESCISIEEL-PQKKSICTSRSFANEGITDKNVIEEAVANFAV 298 Query: 273 RAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDA 332 R EKLR + C+ I+ F TS F + P Y S+ L T +I+ AA L A Sbjct: 299 RCTEKLRRQGSVCQGITVFAWTSRFNEHVPEYTIHDSLTLPIATNAQEEIVGAALSILRA 358 Query: 333 IWQAG------------HRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTL 380 + ++KAGV+L Q +LFD R ++LM +D + Sbjct: 359 KYPKPMADSRPDRSDMSFHFKKAGVILWQISPDHPRQQDLFDPID-RSKQKKLMEAIDAI 417 Query: 381 NAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRVK 422 N K G GT+ A QG ++ +KR +S ++TT D+L+VK Sbjct: 418 NRKNGYGTIRQAIQGTDCRFDLKREYMSKQFTTNIHDILKVK 459 >UniRef50_Q0ACU7 DNA-directed DNA polymerase n=3 Tax=Nitrosomonas eutropha C91 RepID=Q0ACU7_NITEC Length = 431 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 176/431 (40%), Positives = 255/431 (59%), Gaps = 14/431 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D N FY SCE VF+P L KP++VLSNNDGC IAR+ +AKALGVKMG PWF+ K Sbjct: 3 LFALIDGNNFYCSCERVFQPQLQNKPLIVLSNNDGCAIARSEQAKALGVKMGHPWFQVKH 62 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + G++ S+N+ LY DMSNR+MS EL EIYSIDE F G++ D+T Sbjct: 63 LEKSAGLISLSANFALYGDMSNRMMSLASELGDSQEIYSIDECFL---GLQGIPDVTQRA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHA-----AKK--WQRQTGGVVDLSNLERQR 173 ++ RA +LQ + +GI +KTLAKLANH K + + V +L L ++ Sbjct: 120 KDTRAKILQWIGIPTCIGIGASKTLAKLANHIAKDAERKPGSYPPRLAQVCNLVELTERQ 179 Query: 174 K--LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + L + ++WGIGRRI ++L GIKTV D + D +RK F+V LERT REL G Sbjct: 180 RMYLFGITDIGEIWGIGRRIGQQLKDAGIKTVKDFVELDPGTVRKRFSVTLERTWRELHG 239 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + C+ LEE K+EI +R+FG+ + D S+ +A+ + +RAAEKLR + + I F Sbjct: 240 QSCIDLEEIPAPKKEIAYTRTFGQPVRDLVSLTEAVTEFTSRAAEKLRRQQSFASAILVF 299 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I TS P Y S +V L+ P D+ +++AA R L I++ G+ + KAGV+L D Sbjct: 300 IHTSKHRA-GPQYARSITVPLVRPASDTNSLLSAAIRGLRTIYKPGYDFIKAGVILMDLS 358 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPR 410 + V Q+ L ++ ++QLM +D +N++ GRGT+ + G ++ W M + +P Sbjct: 359 TTTVQQIELDFGSSMSNKADQLMQAIDQINSQFGRGTIIYGSTGTGKKTWSMSQQRKTPS 418 Query: 411 YTTRSSDLLRV 421 YT + D+ Sbjct: 419 YTAKIRDIPIA 429 >UniRef50_B8DRU5 DNA-directed DNA polymerase n=13 Tax=Proteobacteria RepID=B8DRU5_DESVM Length = 497 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 178/435 (40%), Positives = 238/435 (54%), Gaps = 17/435 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +AL D N FYASCE +FRPDL GKP+VVLSNNDGC+I+R+ EAKALGV+MG P FK + Sbjct: 62 WALVDCNNFYASCERLFRPDLRGKPIVVLSNNDGCIISRSDEAKALGVEMGAPAFKVRRE 121 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 R GV FSSNY LY D+S+RVM TL LSP V++YSIDEAF L G D GR Sbjct: 122 LARLGVHVFSSNYALYGDLSSRVMRTLGTLSPEVDVYSIDEAFLPLRGPLAA-DPVAVGR 180 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER-----QRKLM 176 +R V + T + + VGIA T+TLAK+A AK + GV DL+ L+ Sbjct: 181 ALRERVARWTGIPISVGIAPTRTLAKIAGRVAK-RTPRCEGVFDLARSREVLGMSVDDLL 239 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC-- 234 +LPV+ VWG+GRR++ L GI T L D ++R+ +V RTV ELRG PC Sbjct: 240 GSLPVESVWGVGRRLAGMLRGAGIATARALRDAGDDWVRRRMSVTGLRTVLELRGLPCIG 299 Query: 235 -LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 + E + ++ SRSF RI D +R+A+ ++AA A KLR ++ ++ Sbjct: 300 AEEQGEPPSPRHTVVSSRSFAGRIADVAMLREALATHAALAGAKLRRAGLVAGGLAVHVR 359 Query: 294 TSPFALNEP-YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS 352 T+ +S ++ L PT DS I A LD +++ G+ Y KAGVML Sbjct: 360 TARHDEQAALRCDDSVALPLPVPTADSAVFIRLAHEGLDRVFRPGYPYAKAGVMLYGLER 419 Query: 353 QGVAQLNLF----DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAM 406 Q +L E+LM V D +NA+ GRG L A +G+ W M++ Sbjct: 420 ADTRQGSLLALADGTAERDAARERLMAVADRINARYGRGKLRHAAEGLDAEAPWHMRQKH 479 Query: 407 LSPRYTTRSSDLLRV 421 SPR TT +L Sbjct: 480 RSPRRTTAWDELAEA 494 >UniRef50_C9LNT4 ATP-NAD kinase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LNT4_9FIRM Length = 403 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 94/393 (23%), Positives = 162/393 (41%), Gaps = 21/393 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P+ GKPV+V + G V + EA+A GV P K ++ Sbjct: 5 IMHVDMDAFYASVEQRDHPEWRGKPVIVGGSSRRGVVATASYEARAFGVHSAMPAVKARE 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTDF 119 L V +++Y +SN + + + +E S+DEAF D++G+ L Sbjct: 65 LCPDA--VFVLPRFDVYKSVSNEIHEIMLHYAVEIEPLSLDEAFMDISGLCGKYETLGAV 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 GR I+A + ++T L GIA K LAKLA+ K + + +++++++ L Sbjct: 123 GRAIKAEIKEKTGLVASAGIAPNKFLAKLASDLDKPDG------LRIIPYGKEKEILAPL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G +KL G T+ D+ + R G +E Sbjct: 177 PVRRLWGVGHVTERKLRNAGFLTIGDIQKAPFAKLASVLGNQASLIQRLSFGIDDRAVEA 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I ++ + +T+ + + I ++ A++LR R IS ++ + F Sbjct: 237 SRRI-KSIGDESTYEKDLTESADIDRQIAIHSDVVAKRLRRHKLAGRTISLKVRFASFR- 294 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S+ L T +I AA I+ + GV + + ++ Sbjct: 295 -----TVTRSLSLEEGTDLQEEIYAAALELKKRIYM-NEGVRLIGVTASNLAPP-LETVD 347 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 LF R + VMD + K G L Sbjct: 348 LFS--TMREKQVKAAAVMDAIQEKFGEHALRKG 378 >UniRef50_B8DIF6 DNA-directed DNA polymerase n=6 Tax=Desulfovibrio RepID=B8DIF6_DESVM Length = 481 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 101/363 (27%), Positives = 157/363 (43%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E + P L GKPV V ++ G V A + EA+ GV+ P L Sbjct: 6 IMHIDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALPMSTALRL 65 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTD-FG 120 ++ YA++S+R+M L E SP VE S+DEA+ D TG+ + G Sbjct: 66 CPH--LIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMG 123 Query: 121 REIRATVLQRT-HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 ++A VL T LT VG A K LAK+A+ K + + E + + L Sbjct: 124 MAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNG------LFILYPEDVAEFLRTL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + G+G+R L+ +G++ D+ F + F G ++E Sbjct: 178 PVGRIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEP 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + +F E D +R+ + + A R LR + R I+ +K + F Sbjct: 238 YSEP-KSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFR- 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ--GVAQ 357 S S L PT + I + A R LDA+ A + GV + +F G Q Sbjct: 296 -----SISRSHSLPEPTASTETIFDEACRLLDALTLADK-VRLIGVGVSNFGPAHHGPRQ 349 Query: 358 LNL 360 L L Sbjct: 350 LTL 352 >UniRef50_A4CII2 DNA polymerase IV n=20 Tax=cellular organisms RepID=A4CII2_9FLAO Length = 366 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 157/360 (43%), Gaps = 18/360 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E +P+L G+P+ V G V A + EA+ GV+ + + Sbjct: 10 IIHIDMDAFFASVEQRDQPELRGRPIAVGGGAKRGVVAAASYEARTFGVRSAMSGVQARR 69 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDF 119 L +V ++ Y ++S ++ E + VE S+DEA+ D+T R T Sbjct: 70 LCPE--LVFVKPRFDRYREVSRQIRGIFLEYTDLVEPLSLDEAYLDVTANRKGMPSATLI 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 REIR +L+ T LT GI+ K +AK+A+ K ++T E ++ + +L Sbjct: 128 AREIRRRILEETGLTASAGISVNKFIAKVASDFNKPNGQKT------VPPEDVQEFLESL 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + G+G+ ++K++A+GI T DL F+ HF R +RG ++ Sbjct: 182 EIRKFHGVGKVTAEKMNALGIFTGADLRRQSEHFLTGHFGKSGHHYYRVVRGVHDSPVQP 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + R+F E ++ M + + A + +LR+ ++ + I+ I+ S F+L Sbjct: 242 SRVP-KSLGAERTFSENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTITLKIRYSDFSL 300 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + S L I+ AA L + G+ L + ++ + Sbjct: 301 Q------TRSRTLAEYIDSPERILAAARDLLYQQPLEN-SVRLLGISLSNLDTEKEKTES 353 >UniRef50_Q1IRF1 DNA-directed DNA polymerase n=2 Tax=Acidobacteria RepID=Q1IRF1_ACIBL Length = 425 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 158/405 (39%), Gaps = 23/405 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN--DGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AF+ S E +F P L GK VVV + G V A + A+ GV P Sbjct: 17 VIFHVDMDAFFVSVEELFDPSLKGKAVVVGGHRDERGVVSAASYAARKFGVHSAMPLRTA 76 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-T 117 L + + + E Y + S + L++ SP+VE+ SIDEA+ D+TG Sbjct: 77 AKLCPDA--IFVNGHPERYREYSGKAFEVLKKFSPKVEMASIDEAYLDMTGTERLHGPPL 134 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + + T L +GI ++ +AK+ + AK GV+ + + ++ Sbjct: 135 KAAHALHQFMKSETKLNCSIGIGTSRLIAKVCSDQAKPN-----GVLYIVPGQE-ASFLA 188 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC--- 234 L V + G+G+ +KL+ +GIK V DLA D F+R+ F + RG Sbjct: 189 PLSVRKIPGVGKVFEQKLNEIGIKKVGDLAKLDDAFLRERFGEWGLALAGKSRGLDAGGY 248 Query: 235 -LQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIK 293 + + I +F D + I + ++R + R + ++ Sbjct: 249 FDRDVAVDEGPKSISHEHTFNTDTRDQEKLEAMIARLSEMVCRRVREHELHARTVQIKLR 308 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ 353 S F + + L PTQ + A WQ G + GV + F Sbjct: 309 YSDFT------TITRAHSLEQPTQLDTVVAETARTLFRDNWQRGRTIRLIGVHVAGF-DD 361 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 QL+L S+ L V+D + K G + A + Sbjct: 362 VPQQLDLLTQTHDDKVSKALS-VVDRMRDKFGENAVSLATGLKSR 405 >UniRef50_B9JZV6 DNA-damage-inducible protein n=17 Tax=Bacteria RepID=B9JZV6_AGRVS Length = 385 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 89/358 (24%), Positives = 150/358 (41%), Gaps = 17/358 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E +P+L GKPV V + G V A + EA+A GV P K Sbjct: 35 IIHVDMDAFYASVEQRDKPELLGKPVAVGGSAARGVVAAASYEARAFGVHSAMPSVTAKR 94 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 ++ +++Y +S+++ E +P +E S+DEA+ D+T + T+ Sbjct: 95 KCP--DLIFVPPRFDVYRQVSHQIREIFAEYTPLIEPLSLDEAYLDVTENLKGMEIATEI 152 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIRA + T L GI+ K LAK+A+ K + + + + AL Sbjct: 153 ALEIRAKIKAATGLNASAGISYNKFLAKMASDLNKPNGQA------VITPKNGPGFVEAL 206 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV G+G ++++ GI+T LDL ++F++ HF RG Q+ Sbjct: 207 PVKRFHGVGPATAERMQRHGIETGLDLKSKSLQFLQTHFGKSGSYFYGIARGIDERQVRA 266 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + +F E I D R + A + S + I+ IK S F+ Sbjct: 267 DR-IRKSVGAEDTFVEDIDDLDPARAELRPLAEKVWRYCESHDIKGKTITVKIKYSDFS- 324 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 + S + D I+ A L +++ H + G+ L ++ Q Sbjct: 325 -----QATRSKTVAGYVSDIDMIMGIAEPLLASVFPFKHPVRLLGITLSSLNTEESEQ 377 >UniRef50_B5EN92 DNA-directed DNA polymerase n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EN92_ACIF5 Length = 378 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 145/375 (38%), Gaps = 27/375 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+A+ E P+L G+PV+V + G V + EA+ G+ + + Sbjct: 15 IIHVDMDAFFAAVEQRDHPELRGQPVIVGGDPAGRGVVATCSYEARRFGIHSAMTAARAR 74 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + V + Y + S +VM L +P VE S+DEAF D+T Sbjct: 75 SLCPQA--VFVRPRMDAYREASRQVMGILRCYTPLVEPLSLDEAFLDVTAATADGVLAVR 132 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 REIRA + + T LT G++ K LAKLA+ K + + E ++ Sbjct: 133 IAREIRARIERETGLTASAGVSYNKLLAKLASEWRKPNG------LFVVPPEHGLAFLAP 186 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G KKL AMGI TVLDL + + F RG ++ Sbjct: 187 LPVGKLHGVGPATVKKLSAMGIHTVLDLRNASREVLIAQFGKAGLWFYEVARGIDSRPVQ 246 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + R+F + + D M + A + + +L++ R +S + F Sbjct: 247 TSR-QRKSVGYERTFPQNLEDPKVMLSTLRQMAGQVSARLQALGLAGRTVSIKARFPDFE 305 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR----YQKAGVMLGDF---- 350 + + + II L A + GV + Sbjct: 306 ------TVTRAHTDAQAIWRTEAIIACLPGLLAKAIPASLPMHASVRLLGVTVSGLVNVE 359 Query: 351 -FSQGVAQLNLFDDN 364 Q+NL ++ Sbjct: 360 AVPPEAGQMNLLEEP 374 >UniRef50_Q1QXW8 DNA-directed DNA polymerase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXW8_CHRSD Length = 419 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 168/424 (39%), Positives = 228/424 (53%), Gaps = 9/424 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYA+CE +F P L G P+ VLSNNDGCVIAR+ E KAL + MG P K Sbjct: 1 MFALIDCNNFYAACERLFEPRLEGVPLGVLSNNDGCVIARSEEFKALDIPMGIPTHKIAP 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR +V SSNY LY D+S RV L + P +E YSIDE F DL G+R D G Sbjct: 61 HLRR-RIVLKSSNYTLYGDLSARVQQVLAQQVPTLEPYSIDECFLDLRGMR--EDWHALG 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR--KLMSA 178 + +V ++ L V +GIA T+TLAKLAN AK Q V + + ++ Sbjct: 118 ATLVRSVQRQVGLPVSIGIAPTRTLAKLANRQAK-TQPTRPQVCVWQSADAPELAAHLAR 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L +VWG+G R++ +L MGI T L +T +R+ F+VVL RT EL G+ CL + Sbjct: 177 LSPREVWGVGERLNARLAGMGIVTAAALRETPDSVLRRRFSVVLARTAAELNGQACLSMG 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ I+CSRSFG+ + D S+ A+ + RA EKLR + I +++T+P Sbjct: 237 DLETPRRSILCSRSFGQPLRDRASLAGALRHHCQRAGEKLRRDAMQASAIGVYMRTNPHH 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + ++ L P+ D++ + AA R L +WQ YQK GVML + + +Q Sbjct: 297 AD-SFHQACEWAALPFPSADTQQLNRAAQRLLARLWQPA-AYQKLGVMLTELTPRRQSQT 354 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 LFD P E LM DT+ A+ GR L Q WQM A S YTTR +L Sbjct: 355 TLFDGAEP-ARQEALMHAWDTIRARYGRQALTLGPQPADAPWQMNSAYRSACYTTRWDEL 413 Query: 419 LRVK 422 R + Sbjct: 414 PRAR 417 >UniRef50_Q2YI99 Nucleotidyltransferase/DNA polymerase n=3 Tax=Bacteroidetes RepID=Q2YI99_9BACT Length = 431 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 157/434 (36%), Positives = 239/434 (55%), Gaps = 15/434 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+ + D + Y SCE VFRPDL GKPVVVLSNNDGCV+AR+ EAK +G+K G P+F+ Sbjct: 1 MYGIIDCDNCYVSCERVFRPDLNGKPVVVLSNNDGCVVARSNEAKKMGIKAGTPYFQLAQ 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + + FSSNYELY +++ RV+ + + +P+ YSIDE F + ++L G Sbjct: 61 QYPDAKIAVFSSNYELYGELTGRVVEIIRQEAPKYFRYSIDECFVYFNDFED-KNLKSGG 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + + + + V +G+A TKTLAK+A++ AKK+ + E+ K + P Sbjct: 120 ENLHKRIRKSVGMPVSIGLAPTKTLAKMASYFAKKYAGYRHC-CLIDTDEKWTKALKLFP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF-NVVLERTVRELRGEPCLQLEE 239 +++VWGIGRR + KL+A+G+ T D A ++R F N+V+ RT +EL G + EE Sbjct: 179 INEVWGIGRRYAAKLEALGVHTAYDFAQHHGDWVRATFHNIVIYRTWQELNGVDAVPNEE 238 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A K+ I SRSF +TD+ +++ + +YAAR AEKLR + ++ F+ T+ F Sbjct: 239 MA-KKKSICTSRSFNGMVTDFDTLKTHVSNYAARCAEKLRQQGTVASIVAVFLHTNLFRE 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + P Y N +L T + DI AA L +I+ G+ Y+KAGV++ QL+ Sbjct: 298 DLPQYWNFQEKRLTVGTNSTIDICKAANEVLQSIYVKGYHYKKAGVIVMGIGPNAPMQLD 357 Query: 360 LFDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQW----------QMKRAMLS 408 LFD NA + ++L V+D +N G T+ Q Q+ +K S Sbjct: 358 LFDYNAEQFQKMKRLDAVIDRINKVNGTETIVLGSQQYTQKDGKGRAEVFANAIKHDYRS 417 Query: 409 PRYTTRSSDLLRVK 422 TTR SD++ +K Sbjct: 418 KNPTTRWSDIIHLK 431 >UniRef50_Q2KZS3 DNA polymerase IV n=2 Tax=Proteobacteria RepID=Q2KZS3_BORA1 Length = 360 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 156/366 (42%), Gaps = 21/366 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E RP+L G+PVVV + V A + EA+ GV + + Sbjct: 8 IVHIDMDAFYASVEQRDRPELRGQPVVVAWTGARSVVCAASYEARRFGVHSAMAVSRAQR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L V ++ Y +S +V + +E S+DEA+ D+T T Sbjct: 68 LCPDA--VYVPPDFNRYRAVSRQVREIFSRHTDLIEPLSLDEAYLDVTVNKLGLPSATAV 125 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IRA + + T LT G+A K LAK+A+ K + + + + + L Sbjct: 126 AEAIRAQIQRETGLTASAGVAPNKFLAKIASDWNKPDG------LFVLRPAKVLEFLQPL 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV V G+GR +L+++GI TV DLA + HF R RG +++ Sbjct: 180 PVRKVPGVGRVTQARLESLGIHTVGDLATCAPAELEHHFGRHGLRLHELARGLDEREVQP 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P Q++ +F + + +A+ AAR E+ R + Q R +KT F L Sbjct: 240 DQPL-QQVSAENTFERDLR-LADLGEALDRLAARVWEQARKKGQLGRTAVLKLKTDRFRL 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDFFS--QGVA 356 + S+ L P + ++ A R + H RY+ AGV + +F Q Sbjct: 298 ------LTRSLTLSQPPSSAEELAAIARRLCARVDLPAHTRYRLAGVGMSNFTDPAQSAR 351 Query: 357 QLNLFD 362 Q +LF Sbjct: 352 QPDLFG 357 >UniRef50_C0QJE1 DinP n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJE1_DESAH Length = 384 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 93/397 (23%), Positives = 161/397 (40%), Gaps = 20/397 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQK 59 M D++AF+A+ E P+ G+P+VV N+ V + EA+ G+ P F Sbjct: 1 MILHMDMDAFFAAIEQRDHPETAGRPLVVGGNSKRSVVATASYEARRFGIHSAMPMFMAL 60 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 D ++ + YA +S ++M+ L E +P VE SIDEAF D+TG + Sbjct: 61 DKC--SHLIVIPPDKSKYAAVSGQIMTLLNEFTPLVEQVSIDEAFLDITGCERLFGSVEK 118 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I+ + Q T LT +G + K LAK+A+ K + +++ Sbjct: 119 ICVAIKDRIKQETGLTCSIGASHLKFLAKIASDMNKPDGIH------IIKRTDTPEVIQT 172 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + V G+G R ++ +GI T+ D++ + K F + RG + Sbjct: 173 LAIKKVPGVGERAMDQMKQLGIITLGDISRIPHPILEKKFGKFATDLLNFSRGIDPSIIG 232 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 P + I + D M++ + ++A R +LR+++ I+ +K S F Sbjct: 233 TSGPI-KSISSESTLENDTLDMVVMKKHLLAHAQRVGRQLRAKNLLATNITIKLKFSDFT 291 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQ 357 + KL+ P S I A + + + GV + F Q Sbjct: 292 ------QITRQTKLMVPICASTAIYREACTLFEQTAKTRK-IRLLGVGVSSFSTPDAPVQ 344 Query: 358 LNLFDD-NAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 L LFD+ + L +D ++ + G T+ A Sbjct: 345 LELFDNIDQKDRRWAVLDRAVDRISHRFGAKTITSAS 381 >UniRef50_D0WQX0 DNA polymerase IV n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQX0_9ACTO Length = 445 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 96/414 (23%), Positives = 162/414 (39%), Gaps = 37/414 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+ S E + RP+L GKPV V G V A + EA+ GV P + Sbjct: 23 ILHVDMDAFFVSVELLDRPELAGKPVAVGGAERGVVSAASYEAREFGVNSAMPVARALRA 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 ++ Y+++S ++M L +++P VE S+DEAF D+ G R Sbjct: 83 CPHLTMI--PPRPGRYSEVSRQIMDILHDVTPLVEKLSVDEAFLDVGGARRLMGGPVRIA 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++RA + + + VGIA TK +AK+A+ AK + L + LP Sbjct: 141 TDLRARIRREVGVPASVGIAATKHVAKIASAHAKPDG------LLLIPRSATIAFLHGLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEE 239 V +WG+G + +L GI+TV +LAD + + R G+ ++ Sbjct: 195 VGALWGVGEKTRARLANQGIETVGELADAGPERLARILGRAHGTHLYRLAMGQDPRPVQT 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +F E + D + + + + A A +LR H R ++ ++ + F Sbjct: 255 SREE-KSIGKEETFFEHVADRGKLERILLAQAHATARRLRRAHLTARTVAIKVRFADFT- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVAQL 358 + S PT + D+ A D++ +G + G+ Q QL Sbjct: 313 -----TITRSTTFARPTDLAADLYAGAKHLFDSVAVSGEGLRLLGLRAEQIVDQREGVQL 367 Query: 359 NL----------FDDNAP---------RPGSEQLMTVMDTLNAKEGRGTLYFAG 393 L F D A P E+ +D + + G Sbjct: 368 ALGADSDDEAWAFGDQAGEGMRQAFGVNPRLERAEAALDRIRDRFGPSFAGPGS 421 >UniRef50_B2GJQ9 DNA polymerase IV n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GJQ9_KOCRD Length = 412 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 166/395 (42%), Gaps = 22/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++ FY E + P G+PV+V + V++ + EA+ GV P + + Sbjct: 17 ILHVDMDMFYVGVELLDAPQHRGRPVIVAGSGPRSVVLSASYEARRFGVHSAMPVSQARA 76 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 V + E YA S VM ++ RVE S+DEAF D++G +R C + Sbjct: 77 RCPSA--VLLEPHREAYAHYSRIVMDIFRSVTDRVEQLSVDEAFVDVSGAIRRCGPPVEI 134 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R +R T+ QRT LT VG+A+ KT+AK+A+ K + + E R ++ L Sbjct: 135 ARGLRRTIQQRTGLTASVGVAENKTVAKIASAHCKPDG------LLVVAPEHTRAFLARL 188 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQLE 238 PVD +WG+GRR S+ L A G+ TV D+A T + + V + G + Sbjct: 189 PVDRLWGVGRRTSETLRAAGLATVGDIAGTPLPRLHALVGVASGSHLQQLALGHDPRPVT 248 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + R+F +++ +++ + A +LR + ++ + F Sbjct: 249 PTREE-KSLGAERTFQTDLSETAELKRVLLGLCHETAARLRRHGLRAGRVGLKLRYADFT 307 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-Q 357 S S L P + D+ A LDA+ + + G+ A Q Sbjct: 308 ------TISRSRTLGHPVTSAHDLYTEAAGLLDALGRRPQAVRLVGIRAEKLVGADHALQ 361 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 L+L + MD ++ + G GT+ A Sbjct: 362 LSL---DGRDAEWGAAEEAMDRVHHRFGPGTVRPA 393 >UniRef50_C6VYA9 DNA-directed DNA polymerase n=15 Tax=Bacteroidetes RepID=C6VYA9_DYAFD Length = 372 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 147/372 (39%), Gaps = 26/372 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+ GKP+ V + G V + EA+ GV+ P + Sbjct: 13 IIHIDMDAFYASVEQRDFPEYRGKPLAVGGSPTGRGVVATASYEARKFGVRSAMPSRQAI 72 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + ++ +E+Y +S + + +E S+DEA+ D+T + Sbjct: 73 QLCPQ--IIFVHPRFEVYKSVSRSIREIFSRYTDLIEPLSLDEAYLDVTEDKMGIGSAME 130 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++I+ + + HLT G++ K +AK+A+ K G + + M Sbjct: 131 IAKQIKQAIQEELHLTASAGVSVNKFVAKIASDIHKPNGLTFIG------PSKIERFMDQ 184 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV+ G+G+ + K+ M + T DL + HF R +RG +++ Sbjct: 185 LPVEKFHGVGKVTADKMKGMQLFTGSDLKKLTEEELVNHFGKTGHFYYRIVRGIDDREVQ 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 T + + +F +T M + + A +L ++ R ++ +K S F Sbjct: 245 THRET-KSLGAEDTFTYDLTTPDEMNKELDRIGVTVANRLETKKLKGRTVTLKVKFSDFT 303 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS------ 352 + + P D I + A + L+ + G + G+ L +F Sbjct: 304 ------QITRNHSFAHPVGDLDTITDTAKQLLEKLDLEGKAVRLLGISLSNFHEPEVKYR 357 Query: 353 --QGVAQLNLFD 362 + QL LF Sbjct: 358 KYKDPEQLELFP 369 >UniRef50_B0PEH3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PEH3_9FIRM Length = 415 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 158/403 (39%), Gaps = 20/403 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D +AFYAS E ++ P L G+PV V+ + G V+A++ EAK GV+ GD ++ Sbjct: 8 ILHVDCDAFYASVECLYNPALRGRPVAVVGDPELRHGIVLAKSQEAKLFGVQTGDALWQA 67 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 + + + +++E Y S E S R E + +DE++ DLTG D Sbjct: 68 RQKCKE--ITFVPAHFEKYLSFSRMTKEIFSEYSDRCESFGLDESWIDLTGCTELFGDGP 125 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +IR + + +T VG++ K AKL + K + + ++ + Sbjct: 126 AVATQIRRRIKEELGITASVGVSFNKVFAKLGSDLNKPDGM------TVIAYDGFKEQVW 179 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV + +GR + KL + GI T+ LA I F+ F + G + Sbjct: 180 PLPVKTLLYVGRATTGKLKSYGITTIGALAQAPITFLEHRFGKIGRMLWMFANGLDTSPV 239 Query: 238 EEFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + I S + + ++ + + + +LR C+ ++ I+ S Sbjct: 240 SNIGAKSLIKSIGNSTTAPRDLITDQEIKITLYALCESISARLREHSFRCKTVALTIRDS 299 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 + L P+ ++++ +AA + G + GV + Sbjct: 300 ------SLTSFERQLALKRPSCITQELFDAAFSLYKQHHKCGLPVRSLGVRAANLMLIDC 353 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 QL++F D A E+L +D + + G + Sbjct: 354 MQLSIFPDVARAQKQERLEETVDDIRRRFGHFAVQRGVMLTDP 396 >UniRef50_Q19NE6 UV protection and repair protein n=9 Tax=Enterobacteriaceae RepID=Q19NE6_ECOK1 Length = 419 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 198/422 (46%), Positives = 270/422 (63%), Gaps = 4/422 (0%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M+ D+N YA+ E P L KP+++ SNND VIA N AK++G+K G P FK +D Sbjct: 1 MYMHVDINGAYAAFECAMDPKLSKKPLIIASNNDSSVIAMNKLAKSVGIKRGTPIFKCRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ + SSN+ LY D SNR TLE +P+ YSIDE F L + D D+G Sbjct: 61 LIQQHRIEVRSSNFTLYEDYSNRFHETLESFAPQSSRYSIDENFMLLKNMNKIIDYEDYG 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R IR+T+L LT GVG + TKTLAKL +A+K+W GGVV L++ R RKL+ + Sbjct: 121 RLIRSTLLHNLSLTCGVGCSSTKTLAKLCTYASKRWAAT-GGVVVLTDQARIRKLLGLIS 179 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++WGIG++IS++L A GI T D ++D+RF+RK F V +ERT REL GEPC +L E Sbjct: 180 TREIWGIGQKISERLSAFGIITAGDFYNSDVRFLRKSFGVEIERTWRELHGEPCFRLHES 239 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P +Q+II SRSFG+R+ + + +A+ + ARAAE+LR + + R I+ FI++S +A Sbjct: 240 PPVRQQIIVSRSFGQRLNEIGKLHEAVSFFTARAAEQLRKDGSWTRQITVFIQSSNYAQG 299 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 E Y N L TQD+RD+++AA L+ I++ G Y KAGVML G QL+L Sbjct: 300 ENRYSNCGIEPLT-ATQDTRDLVDAAMTILNRIYKPGIAYAKAGVMLSAMTD-GTEQLSL 357 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 FD+ RPGS+ LM VMD N KE RG L+ G+GIQQ ++MK+AMLSPRYTTR +LL Sbjct: 358 FDERPARPGSQALMKVMDRFN-KEKRGALFLLGEGIQQDFRMKQAMLSPRYTTRWDELLV 416 Query: 421 VK 422 VK Sbjct: 417 VK 418 >UniRef50_B6BWB3 DNA-directed DNA polymerase n=1 Tax=beta proteobacterium KB13 RepID=B6BWB3_9PROT Length = 414 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 165/422 (39%), Positives = 242/422 (57%), Gaps = 10/422 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 M AL DVN FY SCE VF L PVVVLSNNDGC+I+R+ EAKALG+KMG P+F+ +D Sbjct: 1 MIALVDVNNFYVSCERVFNRSLEYVPVVVLSNNDGCIISRSNEAKALGIKMGMPFFQAQD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ V +SSNY LYADMSNRVM L LS EIYSIDE+F + N ++ G Sbjct: 61 LIKKNNVHVYSSNYPLYADMSNRVMQLLAHLSQDQEIYSIDESFLKI----NQKNYLLHG 116 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVD-LSNLERQRKLMSAL 179 + IRAT+L+ L V VG A+TKTLAKLAN+ AKK+ G V SN + KLM + Sbjct: 117 QHIRATILKNVGLPVCVGFAKTKTLAKLANYMAKKYPMFNGVVCFSESNPKTLTKLMCEI 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++WG+G R+ K+L+ +GI TV DL + +++++ F++ +ER V EL C +E Sbjct: 177 SVGELWGVGVRLKKRLNELGILTVHDLKTANAKWMKQMFSINIERMVYELNDIQCYPIES 236 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +++I+CSRSFG++I Y M A+ ++ RA+ KLR + + ++ F++ +PF+ Sbjct: 237 IKPDQKQIVCSRSFGQKINRYEDMADAVATFVQRASIKLRKQQLTAKQMTLFMRNNPFSS 296 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 ++ T + ++ A L+ I+ G Y KAG++LGD N Sbjct: 297 KHRMQHVIR-LQHYDYTDSHQQLLRLAMHGLEKIYHQGIDYHKAGIILGDLRRAT----N 351 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 L D + +P L +D + K + Q +W M++ S ++TT +LL Sbjct: 352 LNQDYSAKPEGHHLSNTIDAIRDKYHANIIMSGWQSKDGKWHMRQLNKSLKFTTSWLELL 411 Query: 420 RV 421 Sbjct: 412 EA 413 >UniRef50_A6GF38 DNA-directed DNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GF38_9DELT Length = 409 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 107/423 (25%), Positives = 178/423 (42%), Gaps = 27/423 (6%) Query: 7 VNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRC 65 ++AF+AS E P L GKPV+V G V A + EA+ G P + + Sbjct: 1 MDAFFASIEQRDDPRLRGKPVLVGHAGKRGVVAAASYEARRFGCHSAQPMAVARRRCPQA 60 Query: 66 GVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG-REIR 124 V +E+Y +S + LE +P VE SIDEAF D++G + IR Sbjct: 61 --VIVPGRHEVYLGVSAELFEILEGFTPVVEGLSIDEAFLDMSGTQRLHGPPRVAAERIR 118 Query: 125 ATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDV 184 TV +R LT VGIA K +AK+A+ K + + R+R + LPV ++ Sbjct: 119 QTVAERLRLTCSVGIASAKFIAKIASDQDKPDG------LTVVEPGRERAFLHRLPVREL 172 Query: 185 WGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTK 244 WG+G R + L+ G++T+ D+A+ + + + + G + + Sbjct: 173 WGVGPRTQEVLERYGVRTIGDIAELGLETLERDLGEHGRHLHQLSVGVDPRPVSPGR-ER 231 Query: 245 QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYY 304 +++ +FGE + P + + + R A++L ++ + R + ++ + F Sbjct: 232 KQVSHENTFGEDLRSRPEIEDWLLRQSTRVADRLVAKGLHGRKVHLKLRDASFT------ 285 Query: 305 GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH----RYQKAGVMLGDF-FSQGVAQLN 359 + L PTQ++R I A LD + G R + GV + DF QL Sbjct: 286 TWTRQCSLDEPTQEARVIFARARALLDRLEAEGKLRALRIRLTGVGVSDFRRDAPARQLE 345 Query: 360 LFD-----DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTR 414 L + A E + V+ + + G L AG G ++ A P +TR Sbjct: 346 LLPVEGAAEPATDDRGEAVQDVLSEVRRRFGGKALGLAGVGGIRREARDDAGAVPDLSTR 405 Query: 415 SSD 417 D Sbjct: 406 IDD 408 >UniRef50_C6WDG0 DNA-directed DNA polymerase n=8 Tax=Actinomycetales RepID=C6WDG0_ACTMD Length = 430 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 101/402 (25%), Positives = 164/402 (40%), Gaps = 24/402 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E RP+L PVVV + G V + N A+ GV+ P + L Sbjct: 31 LHVDMDAFYASVEIRDRPELARLPVVVGGTAHRGVVASANYLAREFGVRSAMPTAHARRL 90 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDLTDF 119 V ++ Y D+S VM +++P VE S+DEAF D+ G + Sbjct: 91 APHA--VFLPPDFTKYRDVSRGVMELFRQVTPLVEPLSLDEAFLDVGGALRRLRATPAEI 148 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +R V + +T VG+A TK LAKL++ K + + +R + + L Sbjct: 149 AARVRVDVEREHGITCSVGVASTKFLAKLSSGMCKPDG------LMVVPKDRALEFLHPL 202 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLE 238 PV +WG+G+R +++LD +G++TV D+A + +RK V E RG + Sbjct: 203 PVGALWGVGKRTAEQLDRLGLETVGDVAAAPLLRLRKAVGVALAEHLYALARGHDDRPVV 262 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + I +F D ++ + + R A LR++ R +S ++ + F Sbjct: 263 PYTRE-KSIGAEETFEVDHFDRAVLKLELLRLSERTAASLRAKGLRGRTVSIKVRFADFT 321 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGVAQ 357 + S L T +R++ AT LD G + GV + Q Sbjct: 322 ------TITRSKTLRVATDVAREVYATATSLLDDHVPPG-AVRLIGVRVEQLSEGAAGEQ 374 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 L FD G + D + G + A Sbjct: 375 LA-FDAPER--GWREAEQAADQARTRFGTAAVRPASLLSTAP 413 >UniRef50_A6EED8 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Pedobacter sp. BAL39 RepID=A6EED8_9SPHI Length = 417 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 151/422 (35%), Positives = 225/422 (53%), Gaps = 5/422 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFA D+N Y SCE +FRP+L + VVVLSNNDGCVIAR+ EAKA+G+KM D F ++ Sbjct: 1 MFAHVDINNCYVSCERLFRPELERRVVVVLSNNDGCVIARSNEAKAIGIKMADAEFIVRE 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + V FSSNY LYADMS R+M+ L + + +YSIDEAF L G DL+ Sbjct: 61 RLKESNAVIFSSNYALYADMSARLMNNLARYTYTLMVYSIDEAFMAL-GNIKGIDLSQHA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I V + T L + VG+ T +LAKLAN AA ++Q + L E+ ++ P Sbjct: 120 ATISNNVFRDTGLPITVGVGPTLSLAKLANKAA---KKQGRNFMVLDTEEKINAMVQTFP 176 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIG KL + I+T D F+RK V R +EL G PC +++ Sbjct: 177 IEDVWGIGMAYYNKLREINIQTAHDFRSLKADFVRKQMTVQGWRLHQELWGIPCNVIKDV 236 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 A + I S+SF T + +A+ +A A KLR + ++ +++T+ + Sbjct: 237 AERSKGIESSQSFNTYQTTLEKVEEAVAMHAGTVALKLRQQKSMALNLTVYLRTNKHNVK 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 Y S +VK+ ++ ++L AIWQ G+ Y K GV +G Q NL Sbjct: 297 HDQYYPSLTVKIPFAANSVHELTQVCVQALRAIWQPGYNYLKTGVRATGIIPEGEVQNNL 356 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F++ E + ++D +N + GRGTL +G + W+MK+ LS +YTT ++++ Sbjct: 357 FNEYDNSRKQE-ISKLLDQINDRYGRGTLRLGVEGFDKTWKMKQDYLSRQYTTNWAEIIV 415 Query: 421 VK 422 + Sbjct: 416 TR 417 >UniRef50_C5D272 DNA-directed DNA polymerase n=5 Tax=Geobacillus RepID=C5D272_GEOSW Length = 414 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 92/368 (25%), Positives = 163/368 (44%), Gaps = 22/368 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAK-ALGVKMGDPWF 56 + D N+F+ASCE P L GK VVV + G V+A N AK G+ P + Sbjct: 11 VIFHVDCNSFFASCEIARDPSLKGKAVVVAGDPKERKGVVLAANYIAKQRFGIYTTMPLW 70 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL 116 + K + +V ++ LY ++S +V L +P +E SIDE + D+T + Sbjct: 71 EAKKRCPQ--LVVLKPDFHLYREISEKVFQFLATFTPVLERASIDEGYLDITDCYSLGSP 128 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 D +I+ +LQ H+ V +GIA K LAK+A++ K + + K++ Sbjct: 129 LDIAEQIQKELLQTLHIPVSIGIAPNKFLAKMASNMKKPLG------ITVLRKRDVPKVL 182 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV ++ GIG + +KKL+++GI T+ +LA + ++ + R G Sbjct: 183 WPLPVQEMHGIGDKTAKKLNSIGIFTIGELAKAEKVTLQNLLGITGVRLKEWANGIDPRP 242 Query: 237 LEEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ + K + I S + +T+ + + + A + +++ + + I+ S Sbjct: 243 VDPESGEKWKSIGSSTTLPRNVTEERILLEVLRDLAQSVSNRMKQKGVVSSTVQIMIRYS 302 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF--FSQ 353 F + S P Q++ +I A L W G+ + G+ D + Sbjct: 303 NFQ------TITRSKTWENPFQEAEEIFQRAVYLLKRHWN-GNPVRLLGITAVDVFDKKE 355 Query: 354 GVAQLNLF 361 V QL+LF Sbjct: 356 AVKQLDLF 363 >UniRef50_C5BW73 DNA-directed DNA polymerase n=4 Tax=Actinomycetales RepID=C5BW73_BEUC1 Length = 415 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 104/403 (25%), Positives = 172/403 (42%), Gaps = 22/403 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E + PDL G+PV+V + G V+A EA+A GV P + + L Sbjct: 23 ILHVDMDAFFASVELIRAPDLRGRPVIVGGEHRGVVLAATYEARAFGVHSAMPMTRARAL 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDFG 120 + V ++ Y ++S VM L +++P +E S+DEAF D++G R Sbjct: 83 CPQA--VVIPPDHARYEEVSRVVMGLLADVTPVLEQVSVDEAFLDVSGARRRLGSPVAIA 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR+ + + + VG+A TK LAKLA+ AK + L + +LP Sbjct: 141 TAIRSRIREVAQIPASVGVASTKFLAKLASQTAKPDG------LLLVPEAASVPFLHSLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLEE 239 V +WG+G R + +L GI++V LA T +++ R + Sbjct: 195 VGALWGVGERTAAQLREWGIESVEQLAHTPPDVLQRRLGRAGGARLYDLAWNRDPRPV-T 253 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 A ++ I +F +TD + + + A R A +LR R ++ ++ S F Sbjct: 254 VARVEKSISSEHTFVTDVTDAAELGRTLLEQAHRCARRLRRGGFLARGVTIKVRMSDFT- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV--AQ 357 + S +L P+ + D+ AA L A+ + GV + + Q Sbjct: 313 -----TLTRSRQLDHPSDVAHDVYAAARALLAAVTIPRDGVRLLGVRVDQLTAAAATPVQ 367 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQW 400 L L DD AP ++ MD + + G L A + Sbjct: 368 LALDDDAAP---RREVEVAMDDVRDRFGADALGAASLLATSAF 407 >UniRef50_Q31B23 DNA-directed DNA polymerase n=7 Tax=Prochlorococcus marinus RepID=Q31B23_PROM9 Length = 428 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 154/422 (36%), Positives = 233/422 (55%), Gaps = 6/422 (1%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FYASCE P L KPVV+LSNNDGC+IAR+ EA+AL +KMG P+FK K+ Sbjct: 9 IALIDANNFYASCEQTINPHLRNKPVVILSNNDGCIIARSPEARALKIKMGTPYFKVKEK 68 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + V SSNY LY DMS R+M+ L++ ++EIYSIDEAF ++ N ++L + R Sbjct: 69 LNKLDVAVLSSNYSLYGDMSRRLMNLLKKYCEQIEIYSIDEAFVSISR-PNDKNLYPWAR 127 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR+ + Q +T+ VGI + K AK+AN AK + G+ DLS + + + V Sbjct: 128 NIRSLIYQNLGITLTVGIGENKVRAKIANKLAK-NIDYSAGIFDLSRTRNENNYLKRISV 186 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 D++WG+G++ S L + GIK +L D + I K +V +R EL+G CL LE+ Sbjct: 187 DNIWGVGKQTSNWLKSKGIKNARELRDMEENEIIKKLGIVGKRLQLELKGYKCLPLEKSK 246 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 +K+EI SRSFG IT + QA+ ++A +A+EK+RS++ I F +TS ++ Sbjct: 247 KSKKEIQVSRSFGTPITKLEDLTQALATHAIKASEKMRSQNLQSSDIRVFARTSKYSSQN 306 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y SA KL T D+ I+ I+ +++ KAGV++ D + Q ++ Sbjct: 307 --YQRSAHRKLTNATDDTNSILKIVVELSKEIYNPEYKFSKAGVLMQDLTNSEYLQQSVI 364 Query: 362 DDNAPRP--GSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 + + + S LM +D LN + + +A Q+ W+M + LS TT + Sbjct: 365 NYKSQKDLKKSATLMRTIDLLNKRFNNNAITWAITKTQKSWKMNKNFLSRSSTTDIEQIP 424 Query: 420 RV 421 + Sbjct: 425 TI 426 >UniRef50_A6WU94 DNA-directed DNA polymerase n=28 Tax=Gammaproteobacteria RepID=A6WU94_SHEB8 Length = 418 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 179/423 (42%), Positives = 251/423 (59%), Gaps = 7/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY S E VFRPD GKP++VLSNNDGC++A N +AK GV P+F+ KD Sbjct: 1 MFALVDANSFYCSAEQVFRPDWRGKPMIVLSNNDGCIVAANKQAKERGVPKFAPYFQVKD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 L + GV+ SSNYELYAD+S ++M+ + +P +YSIDE+F + L Sbjct: 61 LCTKLGVIVCSSNYELYADLSAKMMNIIGRFAPEQHVYSIDESFLSFKNSYPAIKCLQAQ 120 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G+ IR V + T L V VGI T TLAK ANHAA K GV + N + + ++ ++ Sbjct: 121 GQLIRKAVWKETRLPVCVGIGSTLTLAKAANHAA-KKLPGYQGVCAIDNEQDRISILQSM 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V+DVWGIGRRISKKL+ M ++T DLA RK F++ +ERTVREL G+ C +E Sbjct: 180 SVNDVWGIGRRISKKLELMNVRTAYDLAKIPAGLARKQFSIEIERTVRELNGQACKVWDE 239 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 K++I +RS GERIT+Y + QA+ + A AA K R + C+ + F SP+ Sbjct: 240 ARADKKQIFSTRSVGERITEYEDLLQALSKHVAIAAAKARKQGSSCKTMLLFASNSPY-- 297 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +E G V T S ++I T++ +++AG RY K GV L D S QL+ Sbjct: 298 DERPTGFKTLVHFACATDCSIELIQGMTQAASQLFRAGVRYYKVGVGLIDLVSTQHGQLD 357 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLL 419 LF+ + +P LM +D +N + G TL+ A QGI+Q+W M+R +L+P+YTT+ L Sbjct: 358 LFNVSKAKP---ALMKTLDGINQRYGTDTLFIAAQGIEQKWAMRRDLLTPQYTTKWKCLP 414 Query: 420 RVK 422 +K Sbjct: 415 EIK 417 >UniRef50_C8WRW0 DNA-directed DNA polymerase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRW0_ALIAD Length = 409 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 90/404 (22%), Positives = 154/404 (38%), Gaps = 26/404 (6%) Query: 7 VNAFYASCETVFRP-DLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 +NAFYASC P GKP+ V + G V+ + EA+A GVK P + Sbjct: 1 MNAFYASCHAAVDPARYAGKPIAVAGDPSTRHGIVVTASYEARARGVKPPMPVHQALARC 60 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGRE 122 ++ ++ LY + +V + + E +P VEI SIDE + D+T V R Sbjct: 61 PE--LIVVRPDFHLYRAYARKVFAIVREFTPDVEIVSIDECYADVTHVPGGDRPVHLARA 118 Query: 123 IRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVD 182 I+A +L L +G+A K LAK+A+ K E R L+ L ++ Sbjct: 119 IQARLLDSLGLPSSIGVAPNKFLAKMASDMKKPMGITEL------RSENIRSLLWPLAIE 172 Query: 183 DVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAP 242 + G+G +K+L +GI T+ DLA + + + G LE Sbjct: 173 HMHGVGPSTAKRLRRLGILTIGDLAVQSLDVLARALGPRAAELKARANGIDPRPLETEPQ 232 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 + + S + + + + + R A ++R R ++ ++ + Sbjct: 233 PPKSVGHSMTLAKDAQTFAEVEGVVMDLCDRVASRMRRYGLMGRVVAVAVRDRRMRTSR- 291 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG--VAQLNL 360 L T + + ++ AA IW + GV + + QL+L Sbjct: 292 -----HQDTLATYVRHTGELFQAARALFQRIW-PTEPVRLLGVSVEGLVPRDGQGVQLHL 345 Query: 361 FDD-----NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 +D E+L +D + AK G + Q+ Sbjct: 346 WDAVPTAGEPRDERLEKLERAIDEVRAKFGPSAIRLGRSLSGQR 389 >UniRef50_C7NIB1 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIB1_KYTSD Length = 407 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 94/408 (23%), Positives = 161/408 (39%), Gaps = 22/408 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS V RP+L G+PV+V + V++ EA+A GV+ P + + L Sbjct: 12 VLHVDMDAFYASVALVDRPELRGQPVIVGGGHRSVVLSATYEARAFGVRSAMPMARARRL 71 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFG 120 + ++E YA +S VM +++ V+ S+DEAF D+TG R Sbjct: 72 CPQAT--VVRPDHERYAAVSAAVMEIFRQVTHAVQPTSVDEAFLDVTGTSRRWGSPLQVA 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR TV H+T VGI +AK+A+ AK + + L Sbjct: 130 EWIRRTVAAEQHITCSVGIGPNPFVAKVASGQAKPDGTRQ------VTPAEVVSFLHPLD 183 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEE 239 V +WG+G + ++L G+ TV +A T + +++ G ++ Sbjct: 184 VGVLWGVGEKTQEQLARFGLTTVAQVAHTPVVTLQRIVGDHAGAALAERAWGRDPQRVRP 243 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I ++F I D + + + R A + R+ R + ++ + F Sbjct: 244 VVAE-KTIGNGQTFDHDIDDPRQVETRLLLLSDRVAARARTAGVMGRTVQVTVRFADFT- 301 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG--VAQ 357 S L P+ SR+I A ++ R + V L Q Sbjct: 302 -----TVQRSRTLQRPSDVSREIHQVAREVFASLGLQRARVRMVRVTLSGLTPTDRTPRQ 356 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 L + P G + +D +A+ G G + A +++ RA Sbjct: 357 GML---DEPEVGWREADAAVDRASARFGAGIVRPASLLPEERGPRGRA 401 >UniRef50_D1VXB9 Putative DNA polymerase V subunit UmuC n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VXB9_9BACT Length = 440 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 167/432 (38%), Positives = 249/432 (57%), Gaps = 14/432 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 +A+CD ++ Y SCE VFRPDL KPVVVLSNNDGCV+AR+ EAK +G+ G P+++ K+ Sbjct: 12 YAICDCDSCYVSCERVFRPDLKHKPVVVLSNNDGCVVARSKEAKRMGIPAGMPYYQLKEQ 71 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + + FSSNYELY +++ RVM + E SP+ YSIDE FC L + + DL +G Sbjct: 72 YHDNEIAVFSSNYELYGELTARVMQLIREASPQSVRYSIDECFCVLPDM-SFTDLKQWGE 130 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 + +L+ T + + +GIA TKTLAK+A+H AKK++ + E++ K + P+ Sbjct: 131 SLCHRILKYTGMPISIGIAHTKTLAKMASHYAKKYEGYQHC-CIIDTDEKRTKALQQYPI 189 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +VWGIGRR + KL++MGI++ D A D +IR F VV RT +EL GE C+ ++E Sbjct: 190 SEVWGIGRRHATKLESMGIRSAYDFAMHDKSWIRSLFTVVGMRTWQELWGEDCVPIDEMT 249 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 K+ I SRSF + +Y ++R I ++AAR A KLR + +S F+ T+ F + Sbjct: 250 H-KKSICTSRSFTGMLAEYDAVRTHIANFAARCAYKLRQQQSVASVVSVFVHTNRFREDL 308 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 Y NS SV+LLTP+ ++ I+ AA + L I+ +G++Y+KAGV++ S Q N Sbjct: 309 DQYWNSTSVQLLTPSNSTQVIVQAAAQGLQHIFASGYQYKKAGVVVMGLQSDAAIQTNFL 368 Query: 362 D-DNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ----------QWQMKRAMLSPR 410 D +L V+D LN G T+ Q +Q ++ S Sbjct: 369 DFHATQMEKHIKLDQVVDRLNKLMGTETVKLGAQQYKQKQQNGKAIVFADAIQHVFKSKN 428 Query: 411 YTTRSSDLLRVK 422 TTR SD++ +K Sbjct: 429 PTTRWSDIMELK 440 >UniRef50_D1PR84 DNA-directed DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR84_9FIRM Length = 415 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 96/412 (23%), Positives = 161/412 (39%), Gaps = 25/412 (6%) Query: 1 MFALCDVNAFYASCETVFRP------DLWGKPVVVLSN---NDGCVIARNAEAKALGVKM 51 ++ DVN+ + S + + DL P V + G V+A+++ AK GV+ Sbjct: 4 VYFHVDVNSAFLSWSALKKLRAGETLDLRTVPSAVGGDEEKRHGVVLAKSSPAKKFGVRT 63 Query: 52 GDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR 111 G+ F + ++ +++ Y S +++ L + +P VE YSIDEAF D+TG Sbjct: 64 GESLFSARLKCPE--LIVTPPDFDFYVQNSKALIAILRDYTPDVEQYSIDEAFLDMTGTE 121 Query: 112 NCRDL-TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 IR V + TV +G+A + LAK+A+ K + V L E Sbjct: 122 ALFGPPLTVAHTIRNRVREELGFTVNIGVASNRLLAKMASDFEKPDK-----VHTLFPEE 176 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 K M LPV ++G+G K+L+ GI T+ DLA T+ R I F + Sbjct: 177 VPDK-MWPLPVGSLFGVGPSAVKRLNQCGIYTIGDLARTERRVIVGIFGTRGDTLWNYAN 235 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G + + S + + +T + + +LR++ + R ++ Sbjct: 236 GREADPVTKQTTRDNTYGNSVTLPQDLTRPEQADATLLALCDSVGRRLRTDGKTARVVTV 295 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 + + F S L PT + + A + + +W G + GV Sbjct: 296 QLVDNAFR------RTSHQRTLPDPTNSTDRLYEVALQLMRQMW-PGRPVRLVGVSAEKT 348 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 + QL+LF D R E+L D L K G + A Sbjct: 349 GTDNFEQLDLFTDTTRRQKQEKLDRTADALRRKFGGAAVTRAKLLTPDTRAP 400 >UniRef50_A1WY69 DNA polymerase IV n=47 Tax=Bacteria RepID=DPO4_HALHL Length = 356 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 145/367 (39%), Gaps = 19/367 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P L G+PVVV + G V A + EA+A G++ P + Sbjct: 6 IIHIDMDAFYASVEQRDDPSLRGQPVVVGGSPEGRGVVAAASYEARAFGIRSAQPAAWAR 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 + ++ Y +S ++ + + +E S+DEA+ D+TG + R T Sbjct: 66 RRCPEA--IFLRPRFDRYRAISRQIHGIFADFATTIEPLSLDEAYLDVTGSQRFRGSATH 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + IR + + T LT G++ K LAKLA+ K + + E ++A Sbjct: 124 MAQAIRRRIREETGLTASAGVSYNKLLAKLASDEGKPDG------LYVVPPEDGPAYVAA 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 P+ + G+G + +L+ +GI+ V DL D ++ + RG + Sbjct: 178 QPIRRLHGVGPATAARLERLGIRQVGDLLDWELADLHVFLGNRAGTLHDAARGIDHRPVR 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 +++ I R+FG+ D + Q + + A +L R ++ ++ + F Sbjct: 238 P-RRSRKSIGAERTFGDDTRDLGEIHQRLAPLITKVATRLEHHELVARTVTLKLRYADFE 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + V P + DI L + GV L + Q Sbjct: 297 ------SITRRVSPPGPVAQAADIEALIPALLAETEAGSRPVRLLGVSLSGLQPKQREQ- 349 Query: 359 NLFDDNA 365 +LF Sbjct: 350 DLFSALT 356 >UniRef50_Q3B3L9 DNA-directed DNA polymerase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B3L9_PELLD Length = 432 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 191/423 (45%), Positives = 254/423 (60%), Gaps = 6/423 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FY SCE VF P L G+PVVVLSNNDGCVIAR+ E+KALG+ MG P F+ +D Sbjct: 1 MFALADCNNFYVSCERVFNPMLCGRPVVVLSNNDGCVIARSEESKALGIAMGTPLFRCRD 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + R GV FSSNY LY DMS+RVM+TL ++P E YSIDEAF DL+G R L + Sbjct: 61 VIGRHGVAVFSSNYPLYGDMSSRVMNTLGAMAPEQERYSIDEAFFDLSGFRRF-GLREHA 119 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R TVL+ T + V +GIA TKTLAKLA AAKK GGV+ L +R R+ +++ Sbjct: 120 ALMRRTVLKHTGIPVSIGIAHTKTLAKLAAKAAKKD-PSCGGVLMLEGADRVRRALASTH 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++DVWGIGR+ S KL GI+T D A +R+ V + EL+G CL LE Sbjct: 179 LEDVWGIGRQWSLKLALQGIQTAADFAGMPPALVRRLLGVTGAKVQAELQGHRCLPLELV 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P KQ I SRSFG + +++A+ S+A+RAA KLR E ++ FI TSPFA + Sbjct: 239 RPMKQTICTSRSFGRNVFSVEELQEAVASFASRAASKLRREGSTASLLTVFISTSPFAAS 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV--AQL 358 S +V L D+ ++ AA+R L+AI+Q GH Y+KAGV+LG + Sbjct: 299 ALRREASRTVSLPRAADDAMTLVTAASRVLEAIYQGGHPYRKAGVLLGAIAPKNPPGESF 358 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418 LF D +E L VM+ +N + G G++ A + + W+ +SPRYTT ++ Sbjct: 359 LLFGD-EGEGRAEALQQVMEQVNLRYGNGSIRLAAE-DSRAWEPLCRHISPRYTTSWEEI 416 Query: 419 LRV 421 LRV Sbjct: 417 LRV 419 >UniRef50_B8G1R4 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8G1R4_DESHD Length = 423 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 102/404 (25%), Positives = 168/404 (41%), Gaps = 21/404 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQ 58 L D N++YASC P+L GKP++V N G ++ + EA+ GVK P F+ Sbjct: 16 IVLFDANSYYASCHQAVNPELQGKPLLVAGDPRNRTGIILTASYEARFYGVKTAMPLFQA 75 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGV-RNCRD 115 L V S ++ LY D+S ++ +E + +E+ S+DE F D G Sbjct: 76 LKLCPEA--VVLSPDFRLYLDLSRKMWEIVERYTDEDHIEVVSVDECFADFRGSHLLFGS 133 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK--KWQRQTGGVVDLSNLERQR 173 + R ++ +L+ L V VG++ K AKLA+ + K + + + Sbjct: 134 TEEIARRVQKEILEELGLGVSVGVSYCKIFAKLASDYQRDPKTRVKLPRSFTVIAPGELE 193 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 + L V ++ GIGR+ K+L +GI+T+ DLA + +RK F V + G Sbjct: 194 SKVWPLGVGELSGIGRQTEKQLADLGIRTIGDLAQASPQALRKGFGVYGAKLYAWANGRD 253 Query: 234 CLQLEEFAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFI 292 + K I S + + ITD + + A K+R E + ++ + Sbjct: 254 ERPVTPEDQAKDHSIGRSITLPQDITDPEQGTEVLLFLADSVGRKVRREETKAQTLTVQV 313 Query: 293 KTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS 352 K + F + S L PT + I + + L W G + G+ Sbjct: 314 KDAEFK------TRTYSTTLFEPTDSTDVIYRESLKLLAK-WPQGKPIRLLGLTASRLQ- 365 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI 396 +G+ QL+LF +L +D L K G G L Q + Sbjct: 366 KGIEQLSLF--QEESEEQTELDRTVDELRDKYGSGILMRGTQYL 407 >UniRef50_C9LBG3 DNA polymerase IV n=6 Tax=Clostridiales RepID=C9LBG3_RUMHA Length = 426 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 101/410 (24%), Positives = 175/410 (42%), Gaps = 26/410 (6%) Query: 1 MFALCDVNAFYASCETVFRPD------LWGKPVVVLSN---NDGCVIARNAEAKALGVKM 51 + DVN+ + S E V+R + L P V + G ++A++ AKA GVK Sbjct: 7 VIFHIDVNSAFLSWEAVYRLEQGGTVDLREIPCAVGGDKTKRRGIILAKSLSAKACGVKT 66 Query: 52 GDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR 111 G+P + ++ S+++ +Y S + ++ L E SP VE YSIDEAF D+TG+ Sbjct: 67 GEPLTEALKKCPS--LIVVSAHHSMYRQYSQKFLNILREYSPSVEQYSIDEAFMDMTGME 124 Query: 112 NC-RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 + F +++ + + TV +GI+ K LAK+A+ K + V L E Sbjct: 125 KLIGNPVAFAHKLKNRISKELGFTVNIGISGNKYLAKMASDFEKPDK-----VHTLFPTE 179 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELR 230 + M LPV D+ +GR ++ L +GI T+ DLA+TD+ ++ H E Sbjct: 180 -IKTKMWPLPVSDLLFVGRATTQVLKKLGIYTIGDLANTDVEILKCHLKKQGESIWNFAN 238 Query: 231 GEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 G +E + + S + +TD + + + S A +LR + +S Sbjct: 239 GRDTSLVESESQGNKGYGNSTTIAFDVTDEGTAKMVLLSLCETVAARLRKDDVKAEVVSV 298 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 ++ F S + PT + +I + D +W G + GV Sbjct: 299 SVR--DFE----MKTVSHQRVMAAPTNITGEIYDTVCVLFDELWD-GMPIRHLGVHTSRV 351 Query: 351 FSQG-VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 + Q++LFD N E++ +D + K G + A ++ Sbjct: 352 SKEERGRQMSLFDLNTNYEKMEKMDMAVDKIRKKFGNNAIMRASFLDNKK 401 >UniRef50_Q2P505 Polymerase V subunit n=4 Tax=Xanthomonadaceae RepID=Q2P505_XANOM Length = 428 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 180/432 (41%), Positives = 242/432 (56%), Gaps = 17/432 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N FYASCE VF+P+L G+P+VVLSNNDGC IAR+ EAKALGV MG P K Sbjct: 1 MFALIDGNNFYASCERVFQPELRGRPLVVLSNNDGCAIARSDEAKALGVTMGQPIHKVPT 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 RR + S+N+ LY D+++R+ L + +PRVE+YSIDE+F DL G+R D Sbjct: 61 QIRR-RLALRSANFGLYGDIASRIGVILRQAAPRVEVYSIDESFLDLAGIR---DRRQLA 116 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG-------GVVDL--SNLER 171 ++R V Q T + +GIA TKTLAKLAN AK R+ G GV DL + Sbjct: 117 VDLRERVYQWTGIPNCIGIAPTKTLAKLANRVAKDAARKPGSYPADLAGVCDLAALSASE 176 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 ++ A V D+WG+GRR S +L A G+ T DL D + F VV+ R REL+G Sbjct: 177 LDAVLRATSVGDLWGVGRRWSARLQARGVYTAADLRDAAADDLLAEFGVVMARAQRELQG 236 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 CL+LEE P +Q+I+ SRSFG +++ M +A+ ++A RA EKLR+ I F Sbjct: 237 HACLELEEVEPDRQQIMVSRSFGTWVSNPQDMSEALATFAMRATEKLRARGLTSSAIGIF 296 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 T F P + S + L + T DSR ++ R + G Y+KAGV L D Sbjct: 297 ADTDSFKPGVPQHNPSRTAPLASATSDSRIVLTTVRRLFQGFMREGFAYKKAGVCLMDLA 356 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSP 409 Q +LF R G E+LM+ +D +N + GRGT G Q W ++ +LS Sbjct: 357 KPEDLQGDLFTP--ARIGHEKLMSALDAINRRFGRGTAGLGASGWQNSPSWASRQELLSG 414 Query: 410 RYTTRSSDLLRV 421 R+TT +DL R Sbjct: 415 RFTTSLADLPRA 426 >UniRef50_C7R3I3 DNA-directed DNA polymerase n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3I3_JONDD Length = 413 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 172/398 (43%), Gaps = 20/398 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E RP+L G+PV+V V+A + EA+ LGV+ P + + L Sbjct: 23 VMHVDMDAFYASVEIAQRPELRGQPVIVAGGERSVVLAASYEARELGVRSAMPTQRARLL 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDFG 120 V + + YA +S VM L+ ++P VE SIDEA+ D++G+R + L+ Sbjct: 83 APHA--VWVAPRHHEYARISRSVMDYLDTITPWVEQVSIDEAYLDVSGIRGPQGTLSARA 140 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +E+RA V +T VG+A K LAKL + AK + + ++++ ++ LP Sbjct: 141 QELRAQVKAHHGVTCSVGVAANKFLAKLCSTQAKPDG------LLVLPRGQEQEFLNLLP 194 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQLEE 239 + + GIG + ++L G+ T+ D+A + ++ R + RG + Sbjct: 195 IGALMGIGDKSERRLKQHGLHTIRDVAALEPSYVVALLGATLGNRLIHLARGIDDRPVTP 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + +F + +R + S A +LRS R IS I+ F Sbjct: 255 TRVE-KSVGAEHTFAQDEGSREVLRATVRSLADTVTSRLRSRGLLARTISVKIRDVNF-- 311 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + + V L +P+Q + + A +D G R + GV + L Sbjct: 312 ----HTITRHVTLHSPSQSLHVVFSQAWTLVDRQLLPGQRARLLGVRAEQLVPEEGQPLT 367 Query: 360 L-FDD--NAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 L ++ + + +D + AK G + Q Sbjct: 368 LTLEESLTDHHDTTRKTEETIDAIRAKFGSRAISLGVQ 405 >UniRef50_A3DH61 DNA polymerase IV n=9 Tax=Clostridiales RepID=DPO4_CLOTH Length = 399 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 160/405 (39%), Gaps = 21/405 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N FYAS E ++ P+L KPV V + G V+A+N AK VK G+ ++ Sbjct: 4 VILHCDLNNFYASVECLYHPELRDKPVAVCGSIEDRHGIVLAKNYAAKKYKVKTGETVWE 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDL 116 K+ G+V +N+ LY S E + RVE + +DE + D++ D Sbjct: 64 AKNKCP--GLVVVKANHSLYYKFSKYARQIYEYYTDRVESFGLDECWLDVSESTLLFGDG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 T EIR + + +TV VG++ K AKL + K V + ++ + Sbjct: 122 TKIANEIRERIKRELGVTVSVGVSYNKVFAKLGSDMKKPDA------VTVITENDFKEKI 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV+ + +G KKL+ M + T+ DLA+ F+ + G Sbjct: 176 WGLPVEALLYVGDSTKKKLNNMAVFTIGDLANCHSEFLVRQLGKWGYTLWSFANGYDTSP 235 Query: 237 L--EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + + I S + +T+ +R I + E+LRS + R + IK Sbjct: 236 VAKNDCEIPIKSIGNSLTAPRDLTNNEDVRILIYVLSESVGERLRSHNLKGRTVQISIK- 294 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 + L T + +I A W + GV + D Sbjct: 295 -----DPELQTLERQAGLDIHTSITSEIAQKAYEIFLKSWNWSKNVRALGVRVTDLVESD 349 Query: 355 V-AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 Q++LF D+ R E L +D + + G ++ + Sbjct: 350 TCTQISLFSDDIKRQKLEILDECVDRVRERFGYYSVRRGILLQDR 394 >UniRef50_C8NE97 DNA-directed DNA polymerase n=2 Tax=Granulicatella RepID=C8NE97_9LACT Length = 352 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 21/365 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+AS E P+ GKPV+V N G V + EA+A GV+ P K Sbjct: 4 ILHVDMDAFFASVEQREHPEWRGKPVIVGGKPNERGVVSTCSYEARAFGVRSAMPTAKAM 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 L + + NY LY ++S++V + + +E SIDEA+ D+T R T Sbjct: 64 KLCPKA--ILTPGNYSLYKEISSQVREVFKSFTNMIEPLSIDEAYLDVTNNSRGIASATL 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I+ V ++T LT VG++ K LAK+A+ K + + E ++ + Sbjct: 122 VAHLIQKEVYEKTGLTCSVGVSFNKFLAKMASGYQKPSG------ITVITPENAQEFIRT 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 +P+ D +G+G+ ++KL GI+T DL + F + R ++RG QL Sbjct: 176 IPIGDFYGVGKVSAEKLRRAGIETGEDLLHLSKAELESRFGNLGPRLYAQVRGISNDQLT 235 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ + R+ + TD+ + + + ++ A L+ R IS ++ S F Sbjct: 236 LYR-ERKSMGSERTLIKDTTDHGILSEYLEKFSLEIASMLQKRALASRTISLKLRDSNFN 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG--VA 356 S SV L +I+ A + + + + G+ + Sbjct: 295 ------TTSKSVTLRDYFNKKEEILQLALQLFEEMMDE-KPIRLIGLSVSHLEKTDKIYK 347 Query: 357 QLNLF 361 QL LF Sbjct: 348 QLKLF 352 >UniRef50_C7H2N6 DNA polymerase IV n=8 Tax=Bacteria RepID=C7H2N6_9FIRM Length = 411 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 88/403 (21%), Positives = 154/403 (38%), Gaps = 20/403 (4%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N FYAS E + P+L KPV V + G V+A+N AKA GV G+ ++ Sbjct: 4 VILHCDMNNFYASVECMLNPELKNKPVAVCGSVEERHGIVLAKNYAAKAFGVSTGEAIWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K +V +YE Y S + ++E Y +DE + D+TG Sbjct: 64 AKQKC--QDLVIVEPHYEQYMKFSKLAREIYGRYTDQIEPYGMDECWLDVTGSGCMGTGF 121 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + EIR TV LT+ G++ K AKL + K + + R+ + Sbjct: 122 EIADEIRRTVKFELGLTISAGVSFNKIFAKLGSDMKKPDA------ITCIEADSFREKIW 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 P D+ G+GR K L + GI T+ +LA T F++ + G + Sbjct: 176 CHPASDLLGVGRATEKVLSSYGIHTIGELAATSDDFLKCRLGKNGLVIKKYANGLDDSPV 235 Query: 238 --EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ + I + + + + + + KLR+ + I+ I+ + Sbjct: 236 MRSDYVSPVKSIGHGITTMQDLENNAEVWCVMLELVQEIGTKLRAHKKKAGGIAISIRNN 295 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG- 354 Y ++ PTQ + A +Q H + V + F + Sbjct: 296 E------LYTKEWQCRIGIPTQSPTYLAKTAFALFAKNYQWEHPIRSVTVRAINLFEEDC 349 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 Q +LF D E+L ++ + + G+ + + Sbjct: 350 PIQYDLFTDVKSLDRQERLDAAIEQIRFRFGKDAIKNGVLFQK 392 >UniRef50_Q18A91 DNA polymerase IV n=46 Tax=Bacteria RepID=DPO4_CLOD6 Length = 365 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 75/370 (20%), Positives = 145/370 (39%), Gaps = 21/370 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E L G+PV+V N + G V + EA+ G+ P Sbjct: 7 IIHIDMDAFYASIEQRDNKKLKGRPVIVGGNPQSRGVVATCSYEARKFGIHSAMPSAVAY 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 + V +++Y +S ++ + VE S+DEA+ D+T +N + Sbjct: 67 NRCPYA--VFVRPRFDVYKSVSEKIRDIFYRYTDLVEPLSLDEAYLDVTKNKKNIDSSIE 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++I+ + + LT G++ K LAK+A+ K + + E + + Sbjct: 125 IAKQIKKDIFREVGLTSSAGVSYNKFLAKIASDLRKPNG------LTVITEENAQDFLDK 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV+ +G+G+ S L +GIKT DL ++ + F + RG +E Sbjct: 179 LPVNKFFGVGKVTSNTLKNLGIKTGYDLRCLNLFELENIFKKRGYELYKFARGIDDRPVE 238 Query: 239 EFAPTKQEIICSRSFGERIT-DYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 ++ + + + D R + +L++ ++ + ++ IK F Sbjct: 239 PNR-VRKSVGAETTLSHNLDIDEEETRNILDELCEEVCHRLKNSEKFGKTLTLKIKYEDF 297 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGV 355 + S+ L + DI + L + G + + GV + + + Sbjct: 298 TK------ITRSLSLEHYIDEYNDIRSGVDNLLRNVEVNGKQIRLLGVTISNLSDKKETY 351 Query: 356 AQLNLFDDNA 365 + LF+ Sbjct: 352 KDITLFEYMD 361 >UniRef50_A0K1P6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=A0K1P6_ARTS2 Length = 437 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 165/425 (38%), Positives = 230/425 (54%), Gaps = 11/425 (2%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL DVN FYAS E F P L G+P+VVLSNNDGC + R+ EAKALG+ +G+PWFK Sbjct: 18 IALVDVNCFYASAERAFDPSLEGRPLVVLSNNDGCAVTRSPEAKALGIPVGEPWFKIAPR 77 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + G+V SSNYELY D+S RVM L S +E+YSIDEAF + G + +L G+ Sbjct: 78 AKEWGLVAKSSNYELYGDISARVMELLGRYSAWLEVYSIDEAFLGVKGTPD--ELLRLGQ 135 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSAL 179 I+ V + + V VGIA TKTLAKLAN AK GV + LM + Sbjct: 136 TIKTAVRRNVGVPVCVGIANTKTLAKLANKWAK-NNPGLNGVCHWDSMPPPAREALMGRV 194 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++WG+ R++K+L+ MGI ++LDLA D IR F+VVL RTV EL+G C+ +E Sbjct: 195 SVIELWGVAGRLTKRLNNMGIHSILDLARADPVRIRDRFSVVLMRTVLELQGTACIPMEA 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + ++I SRSF IT +RQ + Y +A+ +L + ++ F TS + Sbjct: 255 ERIGRDQLIFSRSFSTPITTAADLRQVMSVYGQQASARLAKHSLQAKVLTAFAGTSHYNP 314 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + Y S V L PT D + AA L I + + AG+M+ D G Q + Sbjct: 315 LDTSY-PSVCVTLPMPTADPVLLTRAAHALLPRIQEGTKYVR-AGIMVTDLRPSG--QQS 370 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYTTRSSD 417 A + +++ + + GRG++ GI+ W M+R MLSPRYTT ++ Sbjct: 371 PLPVFANPHEERGIGPLLEDITRRYGRGSVGLGHAGIRGGPDWSMQRTMLSPRYTTHWNE 430 Query: 418 LLRVK 422 L VK Sbjct: 431 LPVVK 435 >UniRef50_Q2RYM0 UmuC protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYM0_SALRD Length = 432 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 165/430 (38%), Positives = 224/430 (52%), Gaps = 13/430 (3%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +FAL D FY SCE VF P L G+PV VLSNNDGCVIAR+ E K GV MG P FK ++ Sbjct: 4 VFALIDCENFYVSCERVFDPSLRGRPVAVLSNNDGCVIARSEEVKEAGVPMGAPLFKWRE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 SSNY LY DMS RV S +EE + +E YSIDEAF G+ +L+ Sbjct: 64 ELDEIEAEILSSNYTLYGDMSRRVHSIIEEEALALERYSIDEAFARFPGLSRD-NLSRVA 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK--KWQRQTGGVVDLSNLERQRKLMSA 178 +R + + + V VG+ TKTLAK+A+ K K G + ++ +L+ Sbjct: 123 DRLRRRIRRHIGIPVRVGVGPTKTLAKVADLNGKARKRAGWGQGTYVCPDEPKREELLKR 182 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 + V D+WGIG K L G+ + +IR VV RT ELRG CL LE Sbjct: 183 VSVGDIWGIGSAYEKTLQEKGVASAAGFRALPGPWIRSEMTVVGLRTAWELRGRSCLDLE 242 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 P ++ ++ SRSFGER+ ++R+A+ +A RAAEKLR E + I FI T F Sbjct: 243 LVRPDRKTMVRSRSFGERVETKANLREALAKHAQRAAEKLREEGLVAKGIKVFITTKRF- 301 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + P+Y N + L T + A+ R L+ I+++GH Y+KAGV L D Q Sbjct: 302 GDPPHYSNGVAGALPEHTARASAFAKASRRLLEPIYRSGHGYKKAGVCLYDIRPSRPHQE 361 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG-------IQQQWQMKRAMLSPRY 411 +LF E LM +D +N K G+G + A G ++++W MKR SP Y Sbjct: 362 SLFGQGRKED--EDLMEAVDQINRKHGKGAIGLAAAGLPEGKGHLEREWTMKRQRRSPLY 419 Query: 412 TTRSSDLLRV 421 TTR +L Sbjct: 420 TTRWDELPVA 429 >UniRef50_C6NY09 DNA polymerase IV n=2 Tax=Bacteria RepID=C6NY09_9GAMM Length = 390 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 149/369 (40%), Gaps = 23/369 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+A+ E RP+L G PV+V N G V + EA+ G++ + + Sbjct: 31 IIHVDMDAFFAAVEQRDRPELRGLPVIVGGDPNVRGVVATCSYEARRFGIRSAMSAARAR 90 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 L + + + Y ++S +VM+ L + VE S+DEAF D+T + Sbjct: 91 SLCPQA--IFVRPRMDAYREVSRQVMTILRSYTALVEPLSLDEAFLDVTAATTDGTLAVE 148 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 REI + + T LT G++ K LAKLA+ K + + ER ++ Sbjct: 149 IAREILDRIHRETGLTASAGVSYNKLLAKLASDWRKPHG------LFVIPPERGLAFLAP 202 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G KKL AMG++TVLDL + + F+ HF R ++ Sbjct: 203 LPVGKLHGVGPATVKKLSAMGVETVLDLRNLSLEFLVTHFGKSGGWFYDVARAIDERPVQ 262 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + R+F + + D M + AA+ A +L+ H + + F Sbjct: 263 PSR-QRKSVGTERTFSKNLADRSVMLTTLQEMAAQVAARLQVLHLAGHTVHIKARFPDFT 321 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-----SQ 353 + + + I LD + G+ + S+ Sbjct: 322 ------TVTRAYTATEGIGSADAIAAWLPELLDRAVPKSTSVRLLGITMSGLVNVLAASR 375 Query: 354 GVAQLNLFD 362 Q+NL D Sbjct: 376 VAHQMNLLD 384 >UniRef50_A6DHJ1 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHJ1_9BACT Length = 415 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 164/421 (38%), Positives = 227/421 (53%), Gaps = 15/421 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 AL D N FYASCE F P L G+ +V+LSNNDGCVIAR+AEAKALG++MG P+F+ + L Sbjct: 10 IALADCNNFYASCERCFNPQLIGRAIVILSNNDGCVIARSAEAKALGIQMGVPFFEIRPL 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 GV+ +SSN+ LY D+S RVM L + +E YSIDEAF L + Sbjct: 70 VEMHGVLAYSSNFPLYGDLSARVMQLLHVHAQEIEFYSIDEAFFTL---PTTHCPESYCT 126 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 I+ V Q T + + +GIA TKTLAK+A+ AKK + L +++++ + Sbjct: 127 SIKEQVQQCTGIPISIGIASTKTLAKIASKLAKKSRGTF-----LIQEANRQQVLENTLI 181 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 +D+WGIGRR+SK+L GI+T LA D +++ K F V + RT ELRG P L LE Sbjct: 182 EDIWGIGRRLSKRLQNCGIRTAWQLAMADEQYLLKRFGVCMLRTSHELRGIPSLALENSP 241 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 KQ I SR+F E + D S+ Q + +A RA +KLR E Q ++ T Sbjct: 242 EAKQSIRVSRTFPESVHDLDSLLQQLSFFADRACQKLRQEQQKA----LYVDTFIEGPYP 297 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLF 361 S L +P+ + D I+A S ++ +KAGV L F S+ Q + F Sbjct: 298 TRKHRSTRFYLDSPSDYTPDFIHAVELSGQKLFHHC-EIRKAGVTLHHFSSKNAWQQDFF 356 Query: 362 DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 LM D++N K G+G+L F G ++ + A LSPRYTT +DL V Sbjct: 357 SLPRDHQKQNTLMQQFDSINQKFGKGSLRFLSSGKRE--FSRGARLSPRYTTSWNDLALV 414 Query: 422 K 422 K Sbjct: 415 K 415 >UniRef50_C4G590 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=C4G590_ABIDE Length = 447 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 87/418 (20%), Positives = 158/418 (37%), Gaps = 36/418 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D N FYAS E + P+L GKPV V N G V+ + AK GVK G ++ Sbjct: 23 ILHSDCNCFYASVELLHHPELRGKPVAVGGNPEARHGIVLTADYTAKRYGVKTGMALWQA 82 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 K + ++ +LY S E + ++E + IDE++ D++ D Sbjct: 83 KQVCP--DIIFLPPRMDLYLRFSRMAQEIYSEYTDKIEPFGIDESWLDVSESAGIKGDGY 140 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +EI + + +TV +G++ K AKL + K T G + + Sbjct: 141 AIAKEISERMKKELGITVSIGVSFNKIFAKLGSDYKKPDAITTMG------KDEYKAKAW 194 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV ++ +GR S+K MGIKT+ DLA D + K + G + Sbjct: 195 PLPVANLLYVGRATSRKFADMGIKTIGDLATMDEGILIKKLGKIGSVLHAFANGYDDSPV 254 Query: 238 --EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 E + + + S + + + ++ + A A +LR CR + ++ Sbjct: 255 KLENTSAPVKSVGNSTTTPKDMKTDEDVKIVLYILAESVAARLRENGFRCRTVEISLR-- 312 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG---------------HRY 340 ++ + S VKL + + +I AA ++ Sbjct: 313 ----DKELFHFSKQVKLKNASNITAEIAEAAYLLYKKNYRLPADEEELKNSIPEFYQKPL 368 Query: 341 QKAGVMLGDFFSQGV-AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 + G+ D + Q+++F + R ++ +DT+ + G ++ Sbjct: 369 RSIGICGTDLVTDYYWEQMDIFMNPRLREKQMKMDITVDTIRKRFGFYSIQRGLMYRD 426 >UniRef50_A9KNH1 DNA-directed DNA polymerase n=4 Tax=Clostridiales RepID=A9KNH1_CLOPH Length = 400 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 99/410 (24%), Positives = 175/410 (42%), Gaps = 28/410 (6%) Query: 1 MFALCDVNAFYASCETVFR----PD---LWGKPVVVLS---NNDGCVIARNAEAKALGVK 50 + DVN+ + S E+V R P+ L P V + G V+A++ +AK+ G+ Sbjct: 7 LIFHVDVNSAFLSWESVHRLAADPESIDLRTIPSAVGGDKQSRHGIVLAKSTQAKSFGIV 66 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P +V N+E+Y S R+M+ L E +P + +SIDEAF D+T Sbjct: 67 TGEPLTHALQKCPS--LVVVPPNFEVYTRYSERLMNLLSEYTPTLNQFSIDEAFLDMTDT 124 Query: 111 RNCRD-LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + D +IR VL+ TV +GI+ K LAK+A+ K + Sbjct: 125 YHLFGAPMDIANQIRDRVLKELGFTVNIGISTNKLLAKMASDFKKPN------LCHSLFP 178 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE- 228 + M LPV++++ +G+ K +GI+++ DLA T++ ++ H + E Sbjct: 179 SEIPEKMWPLPVEELFFVGKSAKAKFGILGIRSIYDLAHTNVNILKTHLGNKYSALIHEY 238 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G +E P + S + + + D +Q + + + +LRS + C I Sbjct: 239 ANGIDEEPVEVTDPKAKGCGNSITLSQDVIDNAIAKQVLLALSETVGARLRSSNVSCSCI 298 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + IK + F + L T + I AA R D W + G+ Sbjct: 299 TVEIKYTNFQ------TYTHQTVLPHQTNTTATIYEAACRLFDEFWD-NSPIRLLGIRTT 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 +Q++LFD+N ++L + +D++ K G ++ A + Sbjct: 352 KLDDTDFSQISLFDNNQSD-KFKKLDSAIDSIRNKYGIDSVKRASFLKKG 400 >UniRef50_B9MMT7 DNA-directed DNA polymerase n=2 Tax=Clostridia RepID=B9MMT7_ANATD Length = 411 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 94/404 (23%), Positives = 162/404 (40%), Gaps = 23/404 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N FYAS E +++P+L KPV V G V+A+N AK+ G++ GD ++ Sbjct: 4 VILHCDLNNFYASVECLYQPELRNKPVAVCGESELRHGIVLAKNQIAKSYGIQTGDVIWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDL 116 +V N+ LY S V E + +E + IDE + D++ R Sbjct: 64 ALKKCP--NLVILKPNFPLYIRFSKLVQRIYSEYTDLIEPFGIDECWLDVSQSTGILRSG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 EI+ + LTV VG++ K AKL + K V + E ++++ Sbjct: 122 RKIAYEIKERIKSELGLTVSVGVSFNKVFAKLGSDYKKPDA------VTVITKENFKQIV 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP D+ +G KKL + I T+ D+A + ++++ E G Sbjct: 176 WPLPAKDLLYVGSATEKKLSSRAIYTIGDIAKSSPEYLKRILGKWGEVLWIFANGLDTTP 235 Query: 237 LEEF--APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + I S + +T Y I + A++LR ++ C + +I+ Sbjct: 236 VTPPLFEDNIKGIGNSITLPRDLTCYEDAEYVIRMLSESVAQRLRQQYLKCYTVQVWIRD 295 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQ 353 S + + KL PT +R+I A W + + GV D + Sbjct: 296 SF------LFSITRQEKLKNPTFLAREISQKAFEIFKKHWNFKNSIRSLGVRALDLVCAN 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 QL D+ + EQL +D + + G+ + A + Sbjct: 350 SFYQLEF--DSLKKFKLEQLEKTVDQIRRRFGQSAVLPAILLTK 391 >UniRef50_C9RDA6 DNA-directed DNA polymerase n=1 Tax=Ammonifex degensii KC4 RepID=C9RDA6_AMMDK Length = 385 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 157/397 (39%), Gaps = 25/397 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 LCD++AF+A+ E P+L GKPV+V + G V + EA++ GV+ P K Sbjct: 4 ILLCDLDAFFAAVEQRDHPELRGKPVIVGGSLTGRGVVATCSYEARSFGVRSAMPLKKAL 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 L + + N Y +++ V++ +P +E+ SIDEA+ + + Sbjct: 64 RLCPQA--ILLPVNISRYREVAAEVLAIYRRFTPFIEVVSIDEAYLGVPS----GEGLAV 117 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+ V + L + +G++ K LAK+A AK + E +++ L Sbjct: 118 ARAIKEAVRKELDLPLSIGVSVNKLLAKVACDLAKPQGLKAL------WPEEVPQVLWPL 171 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + GIG + ++L A GIKTV DLA + ++ R G L Sbjct: 172 PVGVLPGIGPKTERQLQAKGIKTVGDLAAAPLYLLKMLLGSEALRFKEYSHGVDRRGLVL 231 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P +F + + + +R A+ A +LR R ++ ++ + F Sbjct: 232 SRPPL-SFSKETTFPQDVQEPEVVRGALMRLAEDLGYRLRQNGYLARSVTLKLRFADFR- 289 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 + + L T I A + ++ G+ + + QL+ Sbjct: 290 -----TVTRTRCLAEGTNRDSLIYRTAWELFQKFASSP-PWRLVGIKVAELS--NWKQLS 341 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI 396 +D L V+D L ++ GR + A Sbjct: 342 WLED-EQEERERMLALVLDALRSRYGRPVVRRASGLK 377 >UniRef50_C0FVJ8 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FVJ8_9FIRM Length = 405 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 97/403 (24%), Positives = 164/403 (40%), Gaps = 27/403 (6%) Query: 1 MFALCDVNAFYASCE----TVFRPD---LWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ + S E PD L V+ + G V+A++ AK G+ Sbjct: 11 LIFHVDVNSAFLSWESAKRLRDNPDALDLRTINAVIGGDEKMRHGVVLAKSPSAKKYGIM 70 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P + +V ++ELYA S + + LEE++P +E SIDEAFCD+TG Sbjct: 71 TGEPLSHARQKCPE--LVVVPPDHELYAASSRKFIEILEEVAPVIEQCSIDEAFCDMTGT 128 Query: 111 RNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 D F +++ + + TV +GI+ K LAK+A+ K + V L Sbjct: 129 EKLYGDPIAFATKLKDRIYKELGFTVNIGISTNKLLAKMASDFEKPNR-----VHTLFPE 183 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E K LPV+ ++G G+ +K+L ++GI T+ LA D + + +F + Sbjct: 184 EMATKFW-PLPVESLYGCGKTTAKRLRSLGITTIGALAKADRQMLLSNFKSQGDYLWESA 242 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G + +P + S + +TD + + S ++R + Y + Sbjct: 243 NGISSSAVTAESPANKGYGNSVTLPYDVTDTENAHHILLSLCETVGARIRYDKAYISVVQ 302 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 I + F + + L + T + I AA + D W + GV Sbjct: 303 VQIVDNDF------HHRCKQLSLPSATNVTEKIYEAACNAFDQGWD-HAPIRLLGVSTSK 355 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + Q NLFD +L + +D + K G + A Sbjct: 356 ATDESYEQYNLFDQ-DKFERLSKLNSAIDKIRDKYGDDAIVRA 397 >UniRef50_C8WAH8 DNA-directed DNA polymerase n=3 Tax=Coriobacteriaceae RepID=C8WAH8_ATOPD Length = 444 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 96/417 (23%), Positives = 171/417 (41%), Gaps = 38/417 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P+ GKPV+V + G V + EA+ GV Sbjct: 25 IGLLDLDAFFASVEQLDHPEWRGKPVIVGGSPHKRGVVSTASYEARKYGVHSAMASATAV 84 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + + Y Y++MS+ VM L++ +P VE SIDEAF D+T G + + + Sbjct: 85 KLCPQA--IWTPGRYNRYSEMSSLVMGFLKDETPLVEQVSIDEAFFDITPGRFSKENPLE 142 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I+ V +T +G+ KT+AK+A+ K + + ++ Sbjct: 143 ICKRIQKKV-AALGITCSIGLGTNKTIAKIASEQEKPRG------LTAVFPGTESHFLAP 195 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++ + GIG ++K L GI+T+ +L+ D ++ + + +G+ ++ Sbjct: 196 LPIEAMSGIGPAMAKTLHQQGIRTLGELSRADSTYLTSFVGNTASKMILRAQGKEVSEVH 255 Query: 239 EFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E A + + + R+F + D + +AI + +LR + ++ +K S Sbjct: 256 EAAHPRDVKSVSNERTFETDLFDKQEIEEAIRHISGVVGRRLRKKQLQGFTVTLKVKAS- 314 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-- 354 ++ ++ PT D A L IW+ G + GV + F + Sbjct: 315 -----ATESHTVQKRMSIPTDDEHLFAEIAVNLLPTIWKEGQPVRLLGVGISSFTDEDNS 369 Query: 355 -VAQLNLFDDNA---------------PRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 Q +LFD + PR L V D L K G + + Sbjct: 370 KPVQTSLFDQSEDTFNTGASVPTTKKKPRSDLRHLSEVTDKLKDKFGASVVQYGRDL 426 >UniRef50_C4L3M4 DNA-directed DNA polymerase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3M4_EXISA Length = 363 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 151/377 (40%), Gaps = 23/377 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AFYAS E RP+L GKPV+V ++ G V + EA+ GV + Sbjct: 4 LIIHVDMDAFYASVEQRDRPNLRGKPVIVGGPPHSRGVVATCSYEARKYGVHSAMSSRRA 63 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLT 117 L ++ Y +S +VM + ++P VE S+DEA+ D+T Sbjct: 64 FALCPHAT--FVKPRFQAYRQVSAQVMEIFKSVTPLVEPLSLDEAYLDVTENSLLSTSGP 121 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 R I + +RT LT G+A +K +AK+A+ K + + L+ ++ Sbjct: 122 FIARYILGEIKRRTGLTASAGVAPSKFVAKIASGFEKPNG------LTVVPLDEVATFLA 175 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQ 236 L ++ + G+G+ ++ L G T+ DL T ++ F ++ G Sbjct: 176 PLSIEAMHGVGKVTAQTLYKSGYHTIGDLQQTRPEQLKGIFGHDRGQQLYELAHGRDTRP 235 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + ++ I +F I D + + + +L C+ ++ IKTS Sbjct: 236 VVAMRE-RKSIGSETTFAFDIDDPEEVFERVIPEMEDVLRQLDRRDLSCQTVTIKIKTSE 294 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QG 354 F S +KL PT D +I A R D + + G+ + D + Sbjct: 295 FQA------RSHQIKLNHPTHDHDEIRRLARRLFDEMNVT-EPVRLIGLTVSDLIPRTES 347 Query: 355 VAQLNLFDDNAPRPGSE 371 QL FD+ E Sbjct: 348 TRQLT-FDELTKPSLEE 363 >UniRef50_A5N2U5 DNA polymerase IV n=5 Tax=Clostridiaceae RepID=DPO4_CLOK5 Length = 400 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 93/409 (22%), Positives = 168/409 (41%), Gaps = 27/409 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFK 57 + L D+NAF+ SCE+ P++ GKP V N G ++ N EA+ GVK K Sbjct: 4 VIFLVDMNAFFISCESTRHPEIIGKPAAVAGDPKNRSGIILTANYEARKFGVKTTMVLHK 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 L ++ ++ Y S VM L + +P +E SIDEA+ D+TG + Sbjct: 64 VLKLCP--NIIIIPPDHCFYKQKSKEVMGILSKYTPVIEKNSIDEAWLDMTGCERIFGRS 121 Query: 118 -DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 I + L +GI++ K LAK+A+ K G+ L + + K + Sbjct: 122 YQTAECIMKHINSELGLDCSIGISENKFLAKMASQMKKP-----LGITKLWKKDIELK-L 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV+ + GIG++ ++KL M IKT+ +LA+ D R++ K V + G Sbjct: 176 WPLPVEFMNGIGKQTARKLREMKIKTIGELANFDRRYLIKKLGKVGAEIHQFANGIDVSP 235 Query: 237 LEEFAPT-KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + + + I S + I+D S + + + + R ++ + IK S Sbjct: 236 VTPHSHKDVKSIGKSITLAHDISDIESAKVILMELSDKVGMTARKYNKKGHTVQINIKYS 295 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QG 354 F + + T ++I +A L+ W + G+ L F Sbjct: 296 NFQ------SITRQRTITE-TYLVKEIYSAGIEMLEKNWNERLPVRLLGISLSGFSKYNE 348 Query: 355 VAQLNLF------DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 Q+++F ++ + +++ +D++ K G + + Sbjct: 349 DEQISMFNMLEIDNEKSSVRKIDKIEAAIDSIRKKYGDSIIKSGSLIKK 397 >UniRef50_B3T119 Putative impB/mucB/samB family protein n=1 Tax=uncultured marine microorganism HF4000_008B14 RepID=B3T119_9ZZZZ Length = 380 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 147/367 (40%), Gaps = 18/367 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYA+ E + PDL GK V+V + N G V + EA+ G+ P Sbjct: 20 VLHADLDAFYAAVEVLDDPDLAGKAVMVGGDPENRGVVATASYEARVFGIHSAMPMRTAV 79 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 L + ++ Y +S VM + + VE S+DEA+ D+T + Sbjct: 80 RLCPHG--IIIHPRFDRYRQLSRAVMDVFHDFTELVEPLSMDEAYLDITEAVDAGRLPLA 137 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 E++ V + LT+ VG +K++AK+A+ K + + +R+ ++ Sbjct: 138 IALELKNRVHENIGLTLSVGAGTSKSVAKIASDLHKPDG------LVVVAPGEEREFLAP 191 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L V +WGIG + ++L A GI+T+ DLA + ++ F GE + Sbjct: 192 LAVGKLWGIGPKTGQRLRADGIETIGDLASQSTGWFQRRFGKRALDVQSRAMGEDREPVR 251 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + +F ++ ++ + A R A+ L + + ++ + + F Sbjct: 252 TEREA-KSVSAESTFATDLSGEGTLYPHLSRLAGRVAQHLEGKQLKGKTVTVKARLADFT 310 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + L PT I+ A R G ++ GV + F QL Sbjct: 311 ------TFTRQTTLPYPTGSDTVILETAWRLFSRELTPGRSFRLLGVGVSGFTEDEEFQL 364 Query: 359 NLFDDNA 365 LF + Sbjct: 365 PLFGEEQ 371 >UniRef50_Q8UJK7 DNA polymerase IV 2 n=3 Tax=Bacteria RepID=DPO42_AGRT5 Length = 357 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 145/367 (39%), Gaps = 23/367 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIAR-NAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P+L G+PV V S V+A + EA+ GV+ P Sbjct: 4 IIHVDMDAFYASVEQRDNPELRGRPVAVGSAAARGVVAAASYEAREFGVRSAMPSVTAAR 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 ++ +++Y +S ++ + E + +E S+DEA+ D+T + T+ Sbjct: 64 RCP--DLIFVPPRFDVYKAVSQQIRAIFAEYTRLIEPLSLDEAYLDVTENLKGMEIATEI 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIR + Q T L GI+ K LAK+A+ K + + + + L Sbjct: 122 ASEIRERIKQITGLNASAGISYNKFLAKMASDLNKPNGQA------VITPKNGPAFVEQL 175 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V G+G ++K+ GI+T DL ++F+ +HF RG Q+ Sbjct: 176 AVKKFHGVGPATAEKMHRFGIETGADLKSKSLQFLAEHFGKSGAYFYGIARGIDERQVRP 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 ++ + +F I D + A + ++ + ++ +K S F Sbjct: 236 DR-IRKSVGAEDTFSVDINDLDLATAELRPLAEKVWHHCEAQRVSGKTVTVKVKYSDFT- 293 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF------SQ 353 + S P ++I+ AA+ L ++ + GV L + Sbjct: 294 -----QATRSRTSALPVNGIQEILEAASALLATVYPFRRSVRLLGVTLSSLTNDQEAEDE 348 Query: 354 GVAQLNL 360 QL+L Sbjct: 349 EQPQLDL 355 >UniRef50_Q31HB8 ImpB/mucB/samB family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HB8_THICR Length = 450 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 193/454 (42%), Positives = 271/454 (59%), Gaps = 38/454 (8%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVI---------------------- 38 +FAL D N+FY SC+ F P L +P VVLSNNDGCV+ Sbjct: 3 VFALVDGNSFYVSCQIAFEPALKNRPAVVLSNNDGCVVAANAKAKAIDAFLRQQKTHFGP 62 Query: 39 ----ARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR 94 A E+ M P+FK K + V FSSNYELYADMS+R+ S L + + Sbjct: 63 GGYKAARPESI-----MFQPYFKVKRYLDQINAVVFSSNYELYADMSSRMHSVLSGFAVQ 117 Query: 95 VEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAK 154 EIYSIDE+F DL+G+ + D T +G E++ TV+Q L V VG ++TLAKLANH AK Sbjct: 118 QEIYSIDESFLDLSGM-SLSDFTAYGEEMKRTVMQWLGLPVAVGFGSSRTLAKLANHLAK 176 Query: 155 KWQRQTGGV-VDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRF 213 K + + + + L+ + + DVWG+G+ +S KL+ GI + DL +D++F Sbjct: 177 KQPDHQDVLDLTVLSEASLNALLKKVAIRDVWGVGKGLSAKLEMQGILSAYDLKVSDLKF 236 Query: 214 IRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAAR 273 IRK +++ LER VRELRGE CL L A + ++II SRSFG+ +T+Y M QA+ SY R Sbjct: 237 IRKRYSITLERIVRELRGESCLSLGALATSDRQIISSRSFGQPVTEYAEMEQAVASYIVR 296 Query: 274 AAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI 333 AAEK+R++H+ C+F++ I+TSPF +Y NS ++ L+ P+ S +I A R+L +I Sbjct: 297 AAEKMRAQHKVCQFVTVSIRTSPFQNRSCFYQNSQTLPLIYPSDSSVLLIKLAKRALRSI 356 Query: 334 WQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAP---RPGSEQLMTVMDTLNAKEGRGTLY 390 WQ+G+ YQKAGV+L +G Q++ F N P S++LM VMD LN G+GT+ Sbjct: 357 WQSGYAYQKAGVILSGVTEKGAVQIDCFAPNPQYSANPKSDRLMQVMDFLNHSMGKGTVQ 416 Query: 391 FAGQGI--QQQWQMKRAMLSPRYTTRSSDLLRVK 422 A +G Q WQMKR+ +S RYTTR +LL V+ Sbjct: 417 LAAEGRKNDQAWQMKRSKMSKRYTTRWDELLTVR 450 >UniRef50_B1CA62 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA62_9FIRM Length = 413 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 170/404 (42%), Gaps = 28/404 (6%) Query: 1 MFALCDVNAFYASCETVFRP-------DLWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ + S + + DL P V + G V+A++ +AK GV+ Sbjct: 8 IIFHIDVNSAFLSWQAAYNKKMGNKEVDLRSIPSAVGGDEAKRKGVVLAKSQKAKKYGVR 67 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+ F+ + ++ N+++Y SN++ L E S +E YSIDE F D T Sbjct: 68 TGESLFEARKKCP--NLLIVKPNFKIYRMYSNKLFDLLSEYSDTIERYSIDECFLDYTSS 125 Query: 111 RNC-RDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + + EI+ + + TV +GI+ K LAK+A K + V+ L Sbjct: 126 QKLFGEPIKAAYEIKERIKRELGFTVNIGISNNKLLAKMAGDLKKPDK-----VITLFPE 180 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRE 228 E + K++ L +++++ +GR+ +KL+++GIKT+ DL + F+ +F Sbjct: 181 EIEEKML-PLTINELFMVGRKTKEKLNSLGIKTIGDLNKCSMGFLISNFKKAQGTMLYNY 239 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G ++ E + + I S + TD +++ + + +LR + I Sbjct: 240 SHGIDESEV-EISRQTKSIGNSTTLKNDTTDINEVKKVFLALSDSVGTRLRRKDLKGNTI 298 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + IK + F + S L T + I A + + W + G+ +G Sbjct: 299 TVTIKNNLF------HSYSHQRTLPYFTNSTNTIYEQAFKLFNEFWN-NDAIRLLGISVG 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 V QL+L ++ +++ VMD L G+ + Sbjct: 352 GLNKDEVNQLSLIEEKIENEKMKKIEEVMDKLRDNYGQDIIKRG 395 >UniRef50_B4WH69 ImpB/MucB/SamB family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WH69_9SYNE Length = 371 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 148/363 (40%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+L GKPV V + G V A + EA+ G+ P Sbjct: 23 IIHIDMDAFYASIEQRDNPELRGKPVAVGGLPSQRGAVCAASYEARKYGIHSAMPSRSAI 82 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 + ++ +E Y +S + + + + VE S+DEA+ D++ + Sbjct: 83 TRCQH--LIFVKPRFEHYRAVSAEIRAIFFDYTELVEPLSLDEAYLDVSVDKQGIGSAVA 140 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++IR + LT G++ K LAK+A+ K + + E + + Sbjct: 141 IAKQIRDRIRTDLQLTASAGVSINKFLAKIASDLNKPDG------LSFISPEEAKTFIEQ 194 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L ++D +G+G + K+ ++GI T DL + + F V R R E + Sbjct: 195 LRIEDFYGVGPATATKMKSLGIHTGADLKTWTQAELTQTFGKVGSYYYRVARAEDNRPVN 254 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ I RSF ++ M A+ + A +++L+ + ++ IK + Sbjct: 255 PNR-IRKSIGAERSFFRDLSQIEDMETALANIATEVSQRLQKNKRQGHTLTLKIKYDNYD 313 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQGVAQ 357 + S L TP + + I+ ATR L + + G+ + + Q Q Sbjct: 314 ------TITRSRTLETPI-EEKQILQIATRLLSLHVERDRPVRLLGITVSNLIAPQPYHQ 366 Query: 358 LNL 360 L L Sbjct: 367 LTL 369 >UniRef50_Q2FKS4 DNA-directed DNA polymerase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKS4_METHJ Length = 368 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 87/365 (23%), Positives = 153/365 (41%), Gaps = 21/365 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 + D+++FYAS E PDL GKPVV+ G V + EA+A G+ P Sbjct: 17 IILHLDMDSFYASVEIRNNPDLSGKPVVIGADPMQGTGRGVVSTCSYEARAFGIHSAMPI 76 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 + L + + YA +S +M L ++ +E SIDEA+ DL+ R+ Sbjct: 77 SQAYHLCPHA--IFIPPHMATYAQVSATIMQILRGIAGEIEQVSIDEAYLDLSCDRSYEL 134 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 I+ + + LT VG+A ++ AK+A+ K + + + + Sbjct: 135 AAHHAANIKQVIRNQVGLTCSVGLAPSRIYAKMASEQQKPDG------LTVVSPDTLESF 188 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + LPV + GIG++ ++ L G++T+ D+A DI+ ++ F R + RG+ Sbjct: 189 LKPLPVGKIPGIGKKSAQVLINAGLQTIGDIARCDIQTLQDMFGSHAVRLHQIARGQDRE 248 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 L E + ++ I +F T + ++ + +L ++ Y R I I+ + Sbjct: 249 GLRE-SGKRRSISREHTFLRDSTSPDEILGSLHTMILSLCHELEEQNIYSRTIGIRIRYT 307 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F + SV L+ PT++ R I A +W + GV Sbjct: 308 GF------ITRTKSVTLMQPTREVRVIECAIDGLFTEMWDRS-PVRLIGVRFSGLIHPDP 360 Query: 356 AQLNL 360 Q +L Sbjct: 361 VQRSL 365 >UniRef50_C1A1E2 DNA polymerase IV n=28 Tax=Actinobacteria (class) RepID=C1A1E2_RHOE4 Length = 432 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 162/400 (40%), Gaps = 24/400 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+++FYAS E P L G+PV+V G V+A + EAKA GV+ + + L Sbjct: 38 ILHADLDSFYASVEQRDDPTLAGRPVIVGG---GVVLAASYEAKAFGVRTAMSGGQARSL 94 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDFG 120 + + Y+ S V + SP VE SIDEAF ++ G+ + G Sbjct: 95 CPQA--IVVPPRMSAYSQASKDVFDVFHDTSPLVEGISIDEAFLEVGGLAKIVGNPLQIG 152 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R V ++ L + VGIA+TK LAK+A+ AK E + + + LP Sbjct: 153 ANLRRDVAEQVGLPITVGIARTKFLAKVASAFAKPDGLLR------VPPEGETEFLHPLP 206 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF-NVVLERTVRELRGEPCLQLEE 239 V+ +WG+G+ + KL I TV D+A D I + Sbjct: 207 VEKLWGVGKITAHKLRNFDIVTVGDIARHDESSIVSILGGGAGRHLYALSHNRDPRPVRA 266 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + + + G + ++ S R + ++RS + R ++ ++ + F Sbjct: 267 YR-GRSSMGAQHALGRGSHSRAELDASLMSLVDRVSRRMRSAQRTGRTVTLRLRFADFT- 324 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ--AGHRYQKAGVMLGDFFSQGVAQ 357 + S L T D+ +++NA+ LD A GV + + G Q Sbjct: 325 -----RATRSHTLRRSTADTAELLNASMVLLDEAVPMIADKGITLIGVAVSNLDRDGAEQ 379 Query: 358 LNL-FDDNA-PRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 L L FD P + L + MD++ K G L Sbjct: 380 LELPFDGPGFAGPDTVALDSAMDSVRKKFGSAALTRGVLL 419 >UniRef50_Q97MB3 DNA polymerase IV n=1 Tax=Clostridium acetobutylicum RepID=DPO4_CLOAB Length = 396 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 171/407 (42%), Gaps = 25/407 (6%) Query: 1 MFALCDVNAFYAS---CETVFRPD---LWGKPVVVLS---NNDGCVIARNAEAKALGVKM 51 + DVN+ + S E + + + P V+ + G V+A++ AK G+ Sbjct: 4 VIFHVDVNSAFLSWTAVEKLKNGEDIDIRKVPSVIGGDEKSRHGVVLAKSTPAKKYGIVT 63 Query: 52 GDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR 111 G+ + + ++ F ++ Y S +M+ L+ +P +E YSIDE F D+T Sbjct: 64 GESLYHARKKCP--NILVFPPRFDTYRKASESMMNLLKRFTPHIEKYSIDECFMDVTNDL 121 Query: 112 NCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 + +F I+ + TV VGI+ + LAK+A+ K + T Sbjct: 122 RGMESVEFASIIKERIKNELGFTVNVGISTNRLLAKMASELNKPDKINTL------YKHE 175 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + M LPV +++ +G+ + +KL+ + IKT+ +LA D+ ++ F G Sbjct: 176 IKDKMWPLPVGELFMVGKSMKRKLNELHIKTIGELAKYDVNILKAKFKSHGNMVWEYANG 235 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + + + I + +TD + + + + ++LR ++YC IS Sbjct: 236 IDNSDISRYRDEIKCISNETTLSMDLTDTEKIHKILVTLCENLGQRLRDANKYCTSISVN 295 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 I+TS F S KL +RDII A + + +W + GV L Sbjct: 296 IRTSDFR------NYSHQKKLKNAVSSTRDIILYADKIFNEMW-GREPIRLLGVQLSGLC 348 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 S Q+++FD+ +E L +D++ K G + + ++ Sbjct: 349 SGSSVQISMFDE-KTDTRNEILDKTLDSIRKKYGDNVIMRSVLLEKE 394 >UniRef50_A7REV5 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7REV5_NEMVE Length = 870 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 88/434 (20%), Positives = 155/434 (35%), Gaps = 66/434 (15%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL--SNNDGC---------------------- 36 + D++ F+ S P+L GKPV V + GC Sbjct: 285 VIMHIDMDCFFVSVYVRDHPELDGKPVAVSRFNGGGGCELKSSHIVNYEMSFPTGFVADL 344 Query: 37 ---------------VIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMS 81 + + + A+ GV+ G + + L + C ++ Y +S Sbjct: 345 TSPDKSSAFFNSMSEIASCSYAARECGVRNGMFLGQARKLCP--DITCVPYLFDKYRQVS 402 Query: 82 NRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTDFGREIRATVLQRTHLTVGVGIA 140 R+ L S +E S DEAF D+T + + ++IRA + T GI+ Sbjct: 403 QRLYEILVSYSHDIEAVSCDEAFLDVTHSLDAGTEPMALAQQIRAEIRAATRCNASAGIS 462 Query: 141 QTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGI 200 LA++ AK + LS + + M++ D+ G+G +SKKL+ MG+ Sbjct: 463 SNVLLARMCTRIAKPDGQ-----FYLSREDDVIQFMASQKAKDLPGVGWALSKKLNDMGV 517 Query: 201 KTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITD 259 +T DL ++ ++K F R RG L ++ + ++G R T Sbjct: 518 ETCADLQKLSLQALQKEFGPKTGLSLHRSCRGVDDRPLR-VERERKSVSAEINYGIRFTQ 576 Query: 260 YPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT--------SPFALNEPYYGNSASVK 311 + I A ++LR R I+ +K F + S S Sbjct: 577 DYEGVKFIEELAGEVHKRLREVGLKGRCITLKLKVRQEGAPMPRKFMGHGICDNVSRSAT 636 Query: 312 LLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFD----DNAPR 367 L+ PT D+ I L + H ++ G+ + + LFD +++ Sbjct: 637 LVEPTDDNSVIARECLNLLKTLNIPAHDFRGLGIQVSKLTNSSAGSKTLFDFMRCEDSTA 696 Query: 368 PGSEQLMTVMDTLN 381 E+ D + Sbjct: 697 EKPEK-----DEIR 705 >UniRef50_C0D1Q6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D1Q6_9CLOT Length = 435 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 101/409 (24%), Positives = 170/409 (41%), Gaps = 28/409 (6%) Query: 1 MFALCDVNAFYASCETVFR----P---DLWGKPVVVLS---NNDGCVIARNAEAKALGVK 50 + DVN+ + S E+V+R P DL P V + G V+A++ AK GV Sbjct: 22 LIFHIDVNSAFLSWESVYRLSADPQALDLRTIPSAVGGDAKSRHGIVLAKSTLAKQYGVT 81 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P + + + S ++ Y S+R+M LE +P E +SIDE F D+T Sbjct: 82 TGEPLAQALRKCPQ--LTVVPSRFDYYIKCSHRMMELLETYTPDHEKFSIDEIFLDMTQT 139 Query: 111 RNCRD-LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + + IR + TV +G+A K LAK+A+ K + L Sbjct: 140 IHLFGQPLEAANRIRERIRDELGFTVNIGVAPNKLLAKMASDFEKPDK-----CHTLFAH 194 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVR-E 228 E K + LP+ +++ +G +K++ +GI T+ LA D+ ++ H T+R Sbjct: 195 EIPSK-LWPLPIRELFFVGGAAQRKMENLGIHTIGQLASCDLAVLKAHLGEKYAVTIRGY 253 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G + E P + S + ++DY + Q I S +LR++ CR + Sbjct: 254 ANGVDVDPVAEKDPINKCYGNSVTLSRDVSDYETACQVILSLCETVGARLRADRVLCRNV 313 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 +K F + S + L PT + + A R L W + GV G Sbjct: 314 CVELKDWEF------HTQSHQMILPEPTDSTSALYGYACRLLREFWDR-TPVRLIGVRAG 366 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 +QL+LFD + + L +D + +K G ++ A + Sbjct: 367 KIDDDSFSQLSLFDSPS-NRKKKDLEKAVDQIRSKFGVDSIKRASFLKE 414 >UniRef50_A0M5X6 DNA polymerase IV n=19 Tax=Bacteroidetes RepID=A0M5X6_GRAFK Length = 406 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 157/395 (39%), Gaps = 21/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++ F+ S E P+L KPV+V + G V A + E + GV G P + Sbjct: 7 IIHLDLDTFFVSAERREHPELNKKPVIVGGLGDRGVVAACSYETRNFGVHSGMPMKVARQ 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V+ N +Y S+ V + P E S+DE + DLTG+ + F Sbjct: 67 LCPAATVI--KGNASIYTKFSHEVTEVIRSKVPSFEKASVDEFYADLTGMDRFFGINQFA 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +E++ ++L+ T L + G++Q K ++K+A K + ++ + + ++ ++ LP Sbjct: 125 KELQQSILKETRLPISFGLSQNKIVSKIATGEGKPYAQK------IIDPGTEKNFLAPLP 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ + +G + +KL +GI+ + + + + + G + F Sbjct: 179 VNKIPMVGNKTFQKLLNLGIRRIETIQKMPVEVLESVLGKNGRTIWKRAHGIDNPPIIPF 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ I R+F D + + + A A +LR ++ +S I+ S F Sbjct: 239 H-ERKSISTERTFNRDTIDMVRLHATLVAMAESLAYQLRRGNKLTSNVSVRIRYSDFQ-- 295 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 S K+ T +I ++ + GV G Q+NL Sbjct: 296 ----TYSKQAKIS-YTSADHILIPKVEELFKQLYSRRMLIRLIGVRFSGLVG-GHYQINL 349 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 FDD+ L MD + + G ++ A Sbjct: 350 FDDSEEML---SLYNSMDKIKKRFGEHSVMRAVSM 381 >UniRef50_Q0AWD6 DNA-directed DNA polymerase n=7 Tax=Bacteria RepID=Q0AWD6_SYNWW Length = 419 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 90/405 (22%), Positives = 161/405 (39%), Gaps = 21/405 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+N FYAS E + RP++ K V V + G V+A+N AK G++ G+ ++ Sbjct: 4 VILHSDLNNFYASVECLHRPEIRNKAVAVCGDPAARHGIVLAKNYLAKESGIQTGEVIWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDL 116 + +V NY LY S S + +VE + +DEA+ D+TG + Sbjct: 64 AQQKCPE--LVVVPPNYPLYLKFSRLARSIYASYTDQVEAFGLDEAWLDVTGSIHIFGSG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + EIR + ++ VG++ K AKL + K + + + ++ Sbjct: 122 IEMADEIRERIKLELGVSASVGVSYNKIFAKLGSDMKKPDA------TTIISKDNFKQTA 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP D+ +GR +K GI T+ D+A++D ++ E G Sbjct: 176 WPLPASDLLYVGRATCRKFARWGISTIGDIAESDPLVLKARLGKWGEVLWSFANGYDRSP 235 Query: 237 LEEFAPTK--QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + + S + + + + I + + A +LR CR + ++ Sbjct: 236 VVAMGEESIIKSVGNSITTPRDLENNEDVLLIIYALSESVAARLREHGFKCRTVHIHVR- 294 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQ 353 ++ + KLL P S DI A + + H + GV D + Sbjct: 295 -----DKNLFTFGVQGKLLRPGNISNDIAEKAMALFRSHYSWAHPIRSIGVRGCDLIAAD 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 QL+LF D R E++ +DTL + G ++ A + Sbjct: 350 SHEQLSLFTDEEKRIKQEKIEATLDTLRCRFGHFSVQRAVLLKDR 394 >UniRef50_C7MN57 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=3 Tax=Coriobacteriaceae RepID=C7MN57_CRYCD Length = 454 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 97/421 (23%), Positives = 158/421 (37%), Gaps = 43/421 (10%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P GKPV+V N G V + EA+ GV P K Sbjct: 29 IMLLDLDAFFASVEQLDHPAWRGKPVIVGGNPEARGVVSTASYEARTYGVHSAMPSSTAK 88 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + Y ++S +VMS +E+ SP +E SIDEAF D+T R Sbjct: 89 RLCPNA--FWTPGRFSRYREISRQVMSIMEDESPALEQVSIDEAFLDITPSRAQTEHPAA 146 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I+ V + +T +G+ ++K +AK A+ A K + + + ++ Sbjct: 147 IAQRIQQRVCE-LGITCSIGLGRSKAVAKTASEAHKPRG------LTIVPPGYEETFLAG 199 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP + GIG + L GI T+ +A D + F RG + Sbjct: 200 LPTKAMSGIGPAAQQALRKFGITTLGQVAQADDVILNHVFGKNASLMRDRCRGCDDSPVM 259 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + SF +T + A+ + AA+ ++R +S ++ F+ Sbjct: 260 -HPAGAKSVSNEMSFAVDLTSREDIEAALSTVAAKVGRRMRMNGLVGSTLSLKLRRGDFS 318 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-AQ 357 ++ SA L P D I LD +W+ G + G L G Q Sbjct: 319 IH------SAQCHLDIPCDDEYVITPILFDLLDRVWRPGDSVRLVGCALTHIEEVGAPLQ 372 Query: 358 LNLFD-----------------DNAPRPGSEQ------LMTVMDTLNAKEGRGTLYFAGQ 394 LFD A R ++ L D++ + G L + + Sbjct: 373 ETLFDVADEAKPDDSSTTEPNTQAAQRARMKREDVRAGLKAATDSVRNRFGETALQYGSE 432 Query: 395 G 395 Sbjct: 433 L 433 >UniRef50_A5FSS1 DNA polymerase IV n=5 Tax=Dehalococcoides RepID=DPO4_DEHSB Length = 390 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 83/397 (20%), Positives = 152/397 (38%), Gaps = 23/397 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+ S E RP+ KPV+V G V A + EA+ G+ G P K Sbjct: 6 VMHVDLDAFFVSVEQAVRPEFKDKPVIVGGKPERRGVVAAASYEARKFGIHSGMPLITAK 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + + N++LY + S + M L + SP +E +DEA+ ++TG + + Sbjct: 66 HLCPQA--IFIEGNHQLYREYSEKFMLILSDFSPFLEPMGLDEAYLEVTGFESLHGSIAQ 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +IR + + +GIA +K AK+A AK + + ++ Sbjct: 124 MASKIRRRITAELGINASIGIANSKVAAKIATEQAKPNGQCE------VPAGEEASFLAP 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + + GIG++ + L ++GI T+ LA F++ G + Sbjct: 178 LDIAVMPGIGKKTEQHLKSLGIDTLGKLAALPASFLKSCLGTYAPYLSNAAMGIDNRPV- 236 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E + I +F + + + + + LR + R + I+ + F Sbjct: 237 EMPSEAKSISRETTFETDTRNQTFLEAKLSYLSEKITATLRKRGKQTRVVQIKIRFADFT 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-AGHRYQKAGVMLGDFFSQGVAQ 357 + L P +R+I A ++ I + GV + DF Q Sbjct: 297 ------TLTRQKHLGQPASGNREIFQTALSLMNGILDSDRQAVRLLGVGISDFCGPE-KQ 349 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 L + + + E+L +D + K G ++ Sbjct: 350 LEI---DPAKARLEKLDASLDKIRQKYGFSSVQTGRT 383 >UniRef50_B2I3H3 Nucleotidyltransferase/DNA polymerase n=12 Tax=Acinetobacter RepID=B2I3H3_ACIBC Length = 442 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 148/425 (34%), Positives = 227/425 (53%), Gaps = 6/425 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 ++AL D+N Y SCE +F P L KPVVVLSNNDGCV++R+ EAK LG+KMG PWF+ + Sbjct: 9 VYALVDINNCYVSCERLFNPKLNDKPVVVLSNNDGCVVSRSEEAKLLGIKMGVPWFQIEK 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELS--PRVEIYSIDEAFCDLTGVRNCRDLTD 118 + GV +SSNY LYA+MS R + L E +E YSIDE F LT D++D Sbjct: 69 DALQAGVQVYSSNYTLYAEMSRRFFAVLGEFFSPDDLEAYSIDECFIHLTPYLQSIDISD 128 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE--RQRKLM 176 + ++R+T+L+ L +GI +KT AKLANH AKK + GV + L+ LM Sbjct: 129 YCNKVRSTLLKWLGLPCCIGIGYSKTQAKLANHYAKKI-KSFKGVCNFITLDPLIMEDLM 187 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 V +VWGIG ++ K+L + + T LDL + + K F+VV+ RT+REL+G+ C+Q Sbjct: 188 QQTSVKEVWGIGYQLVKQLQSYEVYTCLDLTFANEHHMAKAFSVVMARTIRELKGQSCIQ 247 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 L++ A + I+ SRSF + ++ ++QA+ + RA +L + Q C + + Sbjct: 248 LDDPAIPTKRILASRSFAQALSSIEIIKQALIFHLNRAHRRLMKQEQLCACVQVML-YEK 306 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 S ++ L T D + AA + +D +++ Y K GV+ ++ Sbjct: 307 TDKPPYKKATSQAIGLHYATDDLCILTKAAMQQIDVLYKENKSYIKIGVLFCALHARQQH 366 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSS 416 +L+ +QLM + T+ + G L WQMK+ S Y TR + Sbjct: 367 IDDLWQPLELIHQRQQLMETLGTVRKRFGSHYLQVGYHSRNPSWQMKQCHRSKNYLTRWN 426 Query: 417 DLLRV 421 ++L + Sbjct: 427 EMLTI 431 >UniRef50_Q73P36 DNA polymerase IV n=2 Tax=Treponema RepID=DPO4_TREDE Length = 395 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 166/401 (41%), Gaps = 21/401 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 +F D++AF+AS E + P+ GKPV+V + G V + EA+ GV P + + Sbjct: 6 VFFHVDIDAFFASVEQLDNPEYMGKPVIVGGQSERGVVSTCSYEARKFGVHSAMPILQAR 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 L + + Y + S VMS ++ +P ++ S+DEAF ++TG+ + Sbjct: 66 KLCPSG--IFLRGRMDRYHEKSKEVMSIFKDFTPEIKQISVDEAFLNMTGMEKIFGTPKN 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++ T+ + T LTV VG AQ K +AK+A+ +K + + + M + Sbjct: 124 SALLLKKTIKEETGLTVSVGCAQNKYIAKIASGRSKPDG------LFIVKAGEEIDFMKS 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQL 237 LP+ DVWG+G + ++L A G+ +V + ++ ++ + +RGE + Sbjct: 178 LPLKDVWGVGGKTRERLIAAGLTSVPQIFNSSEHLLQSILGNASGSFLFQAVRGELY-DV 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 I R+F + + + + A+ ++ E + +S I+ + F Sbjct: 237 FSDDVKSHSISTERTFEHDLFSHAEIDDVMFYLASELMYRIFDEKVKGKTVSVKIRYNDF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GVA 356 + D++D+ A + + G+ + + S A Sbjct: 297 TTVSVQSTGAV-------VNDTQDLFERARELFYKKFDNKTPIRLLGLCIMNIESDIPEA 349 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 Q LF + ++ M TL KEG+ L A + Sbjct: 350 QTELF-YSEKNVKKRKIEETMYTLTKKEGKNILKPARLLKK 389 >UniRef50_Q4L7K8 DNA polymerase IV n=65 Tax=Staphylococcaceae RepID=DPO4_STAHJ Length = 358 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 140/368 (38%), Gaps = 18/368 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ F+A E P L GKPV+V + G V + EA+ GV P + Sbjct: 6 IIHIDMDYFFAQVEMRDNPTLKGKPVIVGGKASTRGVVSTASYEARKYGVHSAMPMSQAH 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L + ++ Y + S +MS + + VE S+DEA+ D+T + + Sbjct: 66 KLCP--NGYYVRARFDAYREASAVIMSIFKSYTDIVEPMSLDEAYLDITHLVRPDLSASK 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 IR + ++T LT G++ K LAKLA+ K + + + ++ Sbjct: 124 IATFIRRDIFEQTGLTSSAGVSYNKFLAKLASGMNKPNGMK------VIDYNNVNDILMN 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + D G+G+ K + I T DL D + + F + RG +++ Sbjct: 178 LDIGDFPGVGKASKKVMHNHDIYTGKDLYDKTEFELIRWFGKRGRGLYLKARGIDHSEVK 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + R+F + D + Q I + + AE+L + ++ +KT + Sbjct: 238 ATR-VRKSVGTERTFSTDVNDDEEILQKIWELSGKTAERLSKLQKSGSTVTVKLKTYQYE 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 S L DI N A + + + GV +G+ + Sbjct: 297 ------TFSKQRSLREAVSRDIDIYNVAYDLYNDLKDPDVPIRLIGVTVGNLEQSRYENM 350 Query: 359 NLFDDNAP 366 ++D Sbjct: 351 TIYDFIER 358 >UniRef50_UPI000050FCD1 DNA-directed DNA polymerase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCD1 Length = 419 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 85/404 (21%), Positives = 170/404 (42%), Gaps = 23/404 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D+++F+ S E + RP+L G+PV+V + G V++ + EA+ GV P + +L Sbjct: 26 LHLDMDSFFVSVELLSRPELVGRPVIVGGRSGRGVVVSASYEAREFGVHAAMPMGRAMNL 85 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTDFG 120 V+ ++ LY+ S +V + +++P + S+DEA+ D++ R Sbjct: 86 CPFAEVI--PPSHGLYSSYSQKVFDLVAQVTPDFQQVSVDEAYIDVSAAVRRLGSPVRIT 143 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++RA + +T L+ VGIA ++ +AKLA+ AK + L L R+ + +P Sbjct: 144 SQLRAEIEAQTGLSASVGIAGSRVVAKLASTRAKPHGQ------LLVPLSATREFLDPMP 197 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++ + G+G + + GI+ + DLA D + + F R G ++ Sbjct: 198 IEALPGVGEKTKEGFFRYGIRLIGDLAAVDEAWAGRVFGAHGHHLWRSAHGLDSHGMDRQ 257 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I +F E + D + + A + A ++R++ + + + + F Sbjct: 258 VKDR-SISAEHTFNEDVWDLSQLEHELLRLADKVAHRVRADGKVATTLGLKYRLADFT-- 314 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG-HRYQKAGVMLGDFFS--QGVAQ 357 S S+ L PT +R+I A ++ + + + GV Q Sbjct: 315 ----TLSRSITLDAPTDLAREIYEALRPAMRNLREQKSKGVRLLGVRAAGLMDFSASGRQ 370 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQ 401 + L D+ ++ +D + K G + A ++ Sbjct: 371 VRL-DEAEDSGREAEV--ALDDVRKKFGTAAISQASLLRKRPEH 411 >UniRef50_B0TAW2 DNA polymerase iv n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAW2_HELMI Length = 409 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 87/409 (21%), Positives = 150/409 (36%), Gaps = 19/409 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 L D+N+FYAS E P L G+PV+V + G ++A + EAK GVK + Sbjct: 7 VLLADMNSFYASVEMAHNPTLRGQPVLVCGDPERRHGIILAASREAKRRGVKTAMTVGEA 66 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLT 117 + + VC LY ++S ++ LSP VE YS+DE F D+ G + D Sbjct: 67 RAICPDA--VCVRPRMSLYLEVSWQIQQIARTLSPLVEPYSVDELFIDVRGAEHIWGDAV 124 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + R V + + VG+ K L+K+A K + GV ++ + Sbjct: 125 EAAGIFRQRVWEAVKVPCSVGVGPNKFLSKMACDVEAK--KSPSGVALW-RVDDVEAKLH 181 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LP+ ++ +G R+ + MG+ T+ DLA + ++ + F + G + Sbjct: 182 PLPIGKMFMVGSRMERHFRNMGLLTIGDLAHYPVDYLMRRFGLRGAVYHNLAWGRDGSPV 241 Query: 238 EEFA-PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + S + + + + R + R +S ++ Sbjct: 242 RPDSLEQTKSVGHSVTLPRDYHHSDDIELVLLELTDEVCRRARKLGKAGRTVSVGLRAYD 301 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 G L +P+ S + A W G + V L G Sbjct: 302 LT-----RGFYRQTTLPSPSNLSGPVFEKAQLLFRRHWD-GRPVRTVTVDLSGLEEDGTL 355 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 Q LF D +++ MD + G + A + RA Sbjct: 356 QQELFRDMD---RQDRVSRTMDRIRDAMGTTAIVRASSLLPAGQARDRA 401 >UniRef50_C6XT23 DNA-directed DNA polymerase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XT23_PEDHD Length = 385 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 152/395 (38%), Gaps = 21/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D+++F+ S E L GKPV+V ++ G V + + EA+ GV P + Sbjct: 7 IIHMDLDSFFVSVEIKKNSKLAGKPVIVGGLSDRGVVTSCSYEARKYGVHSAMPSRLARQ 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L N + Y++ S V L++ P +E SIDE + D+TG+ F Sbjct: 67 LCPHAE--FVRGNMDDYSEHSRMVTEILQQKVPVLEKASIDEHYIDMTGMERFYGCMKFA 124 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 RE++ V + + L V G++ KT++K+A + K +++ ++ L Sbjct: 125 RELKEQVFKESGLPVSFGLSVNKTVSKIATNECKPNGALQVEQLEI------PSFLNPLS 178 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + + G+G KL MG++ + A + + K ++ G + + Sbjct: 179 IKKIPGLGAATFLKLSEMGVRKIHTFAQIPQQQVYKVLGNNGLSLWQKAHGIDHTPVIPY 238 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I ++F D+ +RQ I A +LR + + ++ I+ S F Sbjct: 239 REQ-KSISKQQTFESDSIDFTQIRQLITGMVIELAYELRKQQKLTACVTIVIRYSNFE-- 295 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + ++ T +I A + + + G+ L + G Q++L Sbjct: 296 ----TITQQCRIP-YTALDDTLIVKAKELFERAYTRRMLIRLVGIKLSALVN-GYEQIDL 349 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 + L MD + + G + A Sbjct: 350 ---YSASEEKYNLYQAMDKIRNRYGEKAIALASTL 381 >UniRef50_A3CSG3 DNA polymerase IV n=4 Tax=Methanomicrobia RepID=DPO4_METMJ Length = 360 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 151/365 (41%), Gaps = 21/365 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 + D+++F+AS E P L G+PV+V G V + EA+ GV G P Sbjct: 7 IVLHVDMDSFFASIEVRRDPSLAGRPVIVGADPKGGAGRGVVSTCSYEARRYGVHSGMPI 66 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 + DL V + YA +S +M+ L + R+E SIDEA+ D++ + Sbjct: 67 SRAFDLCPHG--VYLPVDRPFYASVSVEIMALLSRHAGRIEQVSIDEAYLDVSDAGSFPA 124 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 I+ V + T LT VG+A K +AK+A+ K + + + Sbjct: 125 AGALAAAIKREVREETGLTCSVGVAPGKAVAKIASDFQKPDG------LTIVRPDEVAGF 178 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 +++LPV + GIG++ + L GI TV DLA D++ + R RG Sbjct: 179 LASLPVGRIPGIGKKTGEDLRQAGILTVGDLARRDVQEVIARLGRSGVRVHHLARGIDDG 238 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +++ + I +F D P + + A AE LR+++ CR ++ ++ Sbjct: 239 EVQ-GREGCKSISRETTFEADTADPPVLAGTLAELADDVAETLRADNLRCRTVTVKVRYR 297 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F ++ S L T D I AA+ L + G + GV L Sbjct: 298 GFQ------THTRSRTLPRFTSDPETIRRAASGLLLP-FLNGEPVRLIGVRLSMLEGGCT 350 Query: 356 AQLNL 360 Q ++ Sbjct: 351 RQASI 355 >UniRef50_C2BWE4 DNA-directed DNA polymerase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWE4_9ACTO Length = 456 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 159/427 (37%), Positives = 229/427 (53%), Gaps = 14/427 (3%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 FAL DV++ +ASCE +F P+L+G+PVVVLSNNDGCV+AR+ EAKALG+KMG PWF+ + Sbjct: 38 FALVDVDSCFASCERIFHPELFGRPVVVLSNNDGCVVARSREAKALGIKMGMPWFQIRAR 97 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 CGVV SSNYELY +S R+M L + S VE+YSIDEAF T + R Sbjct: 98 AEACGVVARSSNYELYGSISARIMEILRQFSASVEVYSIDEAFL--TLYGRPTEFVGIAR 155 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSAL 179 +R+ +L + V VGIA T+TLAKLA+H AK GGV + +++ Sbjct: 156 SLRSRILHDLGVPVSVGIAPTRTLAKLASHGAK-HTPALGGVASWDAYTPAQHDRILRGT 214 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + D+WGIGRR+ +L+A+GI L L + IR+ FNV L++TV EL G PC+++ E Sbjct: 215 EIADLWGIGRRLKNRLEALGITDALQLQRANPGEIRRRFNVNLQQTVLELNGVPCIEIIE 274 Query: 240 FAPTK-QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + +++ SRSF + Q + Y+ +LR + + F T+ + Sbjct: 275 RDAVRTHQVMYSRSFSTPVRGVTQAYQVLSIYSQNVTHRLRRQQMTAGALWAFASTAWYK 334 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF-FSQGVAQ 357 EP+ SA L T D ++ AA + L Y +AG+ L D Sbjct: 335 --EPFSRISAMAPLHPRTDDPVTVLKAAAKVLLGQVDPRADYVRAGICLTDLGKPDPQEP 392 Query: 358 LNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ--QQWQMKRAMLSPRYTTRS 415 L +F + ++ +D +NA G G++ G++ W MKR MLS R TT Sbjct: 393 LPIFAPDPESRRRGKI---IDRVNAAVGEGSVGLGLAGLKAAPDWTMKREMLSNRGTTHW 449 Query: 416 SDLLRVK 422 S+L V+ Sbjct: 450 SELALVR 456 >UniRef50_D1VVF6 DNA polymerase IV n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF6_9FIRM Length = 412 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 169/400 (42%), Gaps = 23/400 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+N+FY SCE + +P+L +PV V + G ++A+ AK GV G+P ++ Sbjct: 3 ILHVDMNSFYVSCELIDKPNLKSQPVAVGGDEKLRHGIILAKTPMAKKFGVLTGEPIWQA 62 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 K ++ F NYE Y +S + +VE Y +DE F D+TG + Sbjct: 63 KKKCP--NLLIFPPNYEKYIRISKAAQKIYYSYTNQVEPYGMDECFLDITGSKKLFGSPE 120 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 EI+ + +TV VG++ K AKLA+ K E +K++ Sbjct: 121 KIAFEIKERIKTELKVTVSVGLSFNKVFAKLASDMRKPD------YCTFIYKENYKKIVW 174 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V D+ IG + +KKL+ + IKT+ DLA+ D +RK+ + + G ++ Sbjct: 175 PLKVQDMIMIGPQTTKKLNKINIKTLGDLAEADPEILRKNLGINGIKIYNWANGMDNTRV 234 Query: 238 EEFAP--TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 +++ + I S + E + +Y +R I +++L + R ++ + + Sbjct: 235 KDYYQIIPIKSIGRSITCKEDLLNYEEVRAVIQKLCEDISKRLIENNYLARGVNVGYRKN 294 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI--WQAGHRYQKAGVMLGDFF-S 352 + S+ V L P+ + +I A ++ + + + + Sbjct: 295 NLS------HESSDVLLDYPSNSTLEISAKAMDVFLKNFTFKDDEKIRALYIRAIKLIQN 348 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 + Q++LF+D L + + + G+ ++ + Sbjct: 349 REAIQIDLFNDVKKHFKYLSLEKAIYNIRNRYGKNSITYG 388 >UniRef50_D1PGW5 DNA-directed DNA polymerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW5_9BACT Length = 387 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 18/361 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+A+ E P+L GKPV V G V + EA+ GV + K Sbjct: 21 IIHIDMDAFFAAVEQRDNPELRGKPVAVGFDGPRGVVSTASYEARKYGVHSAQSIAQAKQ 80 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 ++ ++ YA +S+++ +E + +E SIDEAF D+T + D Sbjct: 81 RCP--NLIIVPCRHDYYAKISHQIHQIFQEYTDLIEPISIDEAFLDVTQNKKGIELAVDI 138 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +EI+ + + T LT GI+ K LAK+A+ K G+ + ++ ++ L Sbjct: 139 AKEIKTRIKEATGLTASAGISYCKFLAKVASDYRKPD-----GICTIH-PDKAYDFIAQL 192 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P++D WG+G++ +K+ MGI DL + + F RG + Sbjct: 193 PIEDFWGVGKKTLQKMHFMGIFNGADLRKVSEEHLVEVFGKAGHIFYDFARGIDERPVIT 252 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + ++ + C ++F E I ++ + E++ R ++ +K + F Sbjct: 253 YR-ERKSVGCEQTFLEDIYLKTAVIIELYHTVLELLERIAKSGFEGRTLTLKVKFADFTQ 311 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI-WQAGHRYQKAGVMLGDFFSQGVAQL 358 +K DI+ A R L + + + H + G+ + + S+ + Sbjct: 312 ITRSISQEKVLK------KKDDILPLAKRLLKQVDYSSAHPIRLLGLSVSNASSEEARKQ 365 Query: 359 N 359 + Sbjct: 366 D 366 >UniRef50_A6NU31 Putative uncharacterized protein n=4 Tax=Bacteria RepID=A6NU31_9BACE Length = 414 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 108/417 (25%), Positives = 170/417 (40%), Gaps = 27/417 (6%) Query: 2 FALCDVNAFYASCETVFRPDLW--GKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWF 56 CD+N+FYAS E + P+L GKPV V + G ++A+N AKA+GVK + + Sbjct: 5 ILHCDLNSFYASVELLSLPELRESGKPVAVCGDPESRHGIILAKNEPAKAMGVKTAETIW 64 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--R 114 + + +V ++ + Y S V + + + VE +SIDE++ D+TG + Sbjct: 65 QARQKCP--DLVLLPAHRDQYRKYSRIVNAIYDRFTDLVEPFSIDESWLDITGSMHLWGG 122 Query: 115 DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRK 174 D IR TV T LTV VG++ K AK+ + K + E R+ Sbjct: 123 DGKAIADRIRETVKAETGLTVSVGVSFNKVFAKMGSDYKKPDA------TTVITRENFRQ 176 Query: 175 LMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPC 234 L+ LPV D+ +G +K L G++T+ DLA D + + G Sbjct: 177 LLWPLPVTDLLFVGGAAAKVLRGYGVQTIGDLARFDPQALVTILGKQGAALHSYAAGTEH 236 Query: 235 LQLEEFA--PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFI 292 + P + + +F + +R + + + A +LR C + I Sbjct: 237 EPVIPARDLPPPKSVGSGLTFRRNLLGLEDVRAGLSALSDEVAARLRRHGLKCTTVQVTI 296 Query: 293 KTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS 352 + F +L PT SRDI +AA L A W + V + Sbjct: 297 RDPNFR------DICRQKRLPAPTYVSRDIADAALELLLASWNLKLPIRALTVTGQNLVD 350 Query: 353 --QGVAQLNLFDDNAP--RPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRA 405 QL+LF NA R E+L MD + K G + FA +Q +R Sbjct: 351 EADAGEQLDLFAANAAPHRDKLERLERTMDKIRDKYGGTAITFASAVRGEQGGTQRQ 407 >UniRef50_Q1QAG3 DNA-directed DNA polymerase n=2 Tax=Psychrobacter RepID=Q1QAG3_PSYCK Length = 371 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 21/366 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+L GKP+VV N G V A + E + GV+ ++ + Sbjct: 22 IIHIDMDAFYASVEQRDFPELRGKPLVVGGDPNGRGVVAAASYEVRKFGVRSAMSCYEAR 81 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVR-NCRDLTD 118 V+ +++Y +S + + L+P VE S+DEA+ D+TG+ + T Sbjct: 82 KRCPE--VIFVPPRFDVYRAVSVEIRRIMHILTPHVEPLSLDEAYLDVTGLSVHQGSATL 139 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +RA +L +T L G++ K LAK+A+ K + +SA Sbjct: 140 MANWLRAQILGQTGLNASAGVSFNKMLAKIASDINKPNG------TAVITPADADAFISA 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++ GIG+ +K+L AMG+ DL T + F + G ++ Sbjct: 194 LPIERFHGIGKATAKRLHAMGVSNGADLRRTPAAILVNEFGKRGQFYHDIAHGRDERAVK 253 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + +F E +TD ++ I A A +L + I+ +K S F Sbjct: 254 SERT-HKSVGSETTFRENLTDDNELKIQIYEQNADAFSQLHKKQLIAYTITLKVKYSDFT 312 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-- 356 + S L T + + I + GV S Sbjct: 313 ------QVTRSHTLSTAFDSAESAHFWLDKLFLDI-PRTLPIRLVGVTFSSLTSATQVTP 365 Query: 357 QLNLFD 362 QLNLF+ Sbjct: 366 QLNLFE 371 >UniRef50_A3M2E2 DNA-directed DNA polymerase n=8 Tax=Acinetobacter RepID=A3M2E2_ACIBT Length = 436 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 150/424 (35%), Positives = 226/424 (53%), Gaps = 4/424 (0%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 F L DVN Y S ET F P L G+ V+VLS+NDG V+AR+ AK LG+KMG+P F+ DL Sbjct: 13 FFLVDVNNMYTSVETAFDPSLTGRSVIVLSSNDGNVVARSPAAKKLGIKMGEPLFQILDL 72 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELS--PRVEIYSIDEAFCDLTGVRNCRDLTDF 119 R V+ SSNY +Y +MS R L E EIYS+DEAF +LT R +L Sbjct: 73 VMRNDVIVLSSNYIIYGEMSRRFHKILAEYVSPENHEIYSVDEAFLELTSYRGIYNLNQC 132 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 ++I+ +L+ L V VGI ++KT AK+ N+ AK + G E + + Sbjct: 133 AQDIKEKLLKLLSLPVCVGIGRSKTEAKIMNYIAKTYPHLNGICNVFDLAEVKDSIFRNT 192 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V +VWG+G + KKL M I TV DL I+ F+VVL+RTV EL G C+ +E Sbjct: 193 DVGEVWGVGSQQKKKLRLMNINTVYDLMTASPSHIQSVFSVVLKRTVLELNGISCIDIEH 252 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 PTK++I+ SR+FG+RITD +++A+ A + R+E I F ++PF Sbjct: 253 TPPTKKQIVSSRTFGQRITDIHDLKEAVIKRTQEAFTRARNEQVLVGCIIVFAYSNPFDK 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 +P+Y S PT D R ++ ATR +D ++++G ++KAGV+L + + Sbjct: 313 TKPFYKKEQSSSFAVPTDDLRLLVQTATRLMDQVYKSGIEFKKAGVILTCLEPKHTYTYD 372 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ-WQMKRAMLSPRYTTRSSDL 418 L D+ +EQLM ++ + G+ + F G + + W + + Y + Sbjct: 373 LLTDHQDLEKTEQLMKAIEEVQQIFGKNKIGFGGSMFKNRIWNLTANYQTRNYF-SFDGM 431 Query: 419 LRVK 422 +++K Sbjct: 432 IKIK 435 >UniRef50_Q2IM85 DNA-directed DNA polymerase n=7 Tax=Myxococcales RepID=Q2IM85_ANADE Length = 418 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 99/410 (24%), Positives = 162/410 (39%), Gaps = 25/410 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E + P+L G+PV+V N G V A + EA+ GV+ P + + Sbjct: 13 ILHLDLDAFYASVEQLDHPELRGRPVIVGGTGNRGVVCAASYEARRFGVRSALPTARARR 72 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-TDF 119 L V + Y+++S RV +P VE S+DEAF D+T R D Sbjct: 73 LCPDG--VFLPPRFGRYSELSRRVFDVYRRYTPLVEPLSLDEAFLDVTASRALHGGGPDI 130 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 R I+A V L V G+A K AK+A K + + ++ L Sbjct: 131 ARAIKAAVRGECGLAVSAGVADVKMAAKIATDLGKPDG------LVVVPPGGVAAFLAPL 184 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE-LRGEPCLQLE 238 PV +WG+G L +G+ T+ DLA + R +R GE ++ Sbjct: 185 PVGRLWGVGEVTEAALRRIGVATIGDLARMPESALAAALGPTHARGLRALACGEDPREVV 244 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + + +F + + P++ + + + A A +LR+ ++ +K + F Sbjct: 245 P-DEEAKSVGAEDTFDQDLLGRPALERELLAQAGTVARRLRAAGLAGHVVTLKVKYADFT 303 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQGVAQ 357 L + V L T D R I +AA L + + G+ + F + Q Sbjct: 304 L------VTRRVTLERATDDDRAIFDAACAQLARV-DLRRPVRLTGISVSGFAGDEERGQ 356 Query: 358 LNLF-----DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 L LF + L +D L + G G + A + + Sbjct: 357 LGLFGGAPAPPPPEASRRKALNAALDALAGRFGEGAVTRADLAGRPPRRR 406 >UniRef50_C0LIJ7 Putative DNA polymerase V subunit UmuC n=1 Tax=Acinetobacter sp. NFM2 RepID=C0LIJ7_9GAMM Length = 429 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 148/416 (35%), Positives = 229/416 (55%), Gaps = 6/416 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F D+N+ Y S E + P L GKP VVLS+NDG +IAR+AEAK L + MG P FK +D Sbjct: 5 VFIHVDINSAYCSMEAFWNPKLKGKPCVVLSSNDGTIIARSAEAKLLKIPMGAPLFKVQD 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNCRDLTD 118 + + V SSN+ LY +MS R L IYSIDE F + T D T+ Sbjct: 65 IINKHNVHVLSSNFALYGEMSRRFHGILSGFVDPSCYSIYSIDEGFIEFTQFTKNFDATE 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE--RQRKLM 176 REIR V + LT VG+ +T T +K+AN+ AKK + G+ +L + Sbjct: 125 MAREIRHQVYKFIGLTTCVGVGRTLTESKMANNLAKKN-PELNGICNLVTMSLVDVESYY 183 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 ++PVD++WG+GR+ +KKL+ MGI +VLDLA ++ +R+ FNV ++ T+ EL G+PC + Sbjct: 184 QSMPVDEIWGVGRKYAKKLNDMGILSVLDLATSNPNRMRELFNVNMQSTILELLGQPCFE 243 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 E KQ+I+ S+SFG++IT+ +++AI Y A +L +EHQ C + F++++P Sbjct: 244 FESSPKAKQQIVSSKSFGQKITELSILQEAISKYTHNAFNRLVAEHQLCGSLIVFLQSNP 303 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F ++PYY S + PT + ++ AAT +D +++ G ++K GVML + + Sbjct: 304 FDQSKPYYSKSLTYTFTQPTNNLMQLVKAATSLIDKLYKEGIEFKKCGVMLCELIKEEHR 363 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG-QGIQQQWQMKRAMLSPRY 411 + L D + LMT + +K G+ + + W+ K S Y Sbjct: 364 TIGLLTDVEQLEKEQALMTAFQNIQSKFGKAKIAAGSCNLKNRDWEPKSERQSRNY 419 >UniRef50_C8P3H3 DNA polymerase IV (Pol IV) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3H3_ERYRH Length = 406 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 163/407 (40%), Gaps = 24/407 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 CD++ +A E + P L P+ V + G V+ARN AKA GVK + + Sbjct: 6 ILHCDIDYCFAQIEIMKNPSLADVPMCVGGDESKRHGIVLARNPIAKAKGVKTAETLNEA 65 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LT 117 + G+V +++ Y +SN+V E + +VE + IDEA+ D++ Sbjct: 66 RRKCP--GLVIVPPSFDDYLTISNQVKDIYREYTDKVESFGIDEAWVDISDSLLLFGKPG 123 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 D EIR + LTV +G++ K AKL + K + + + ++ Sbjct: 124 DIATEIRKRIKTEIGLTVSIGMSFNKIFAKLGSDLNKPDG------LTILMESHVKSMIW 177 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV D+ +G K L+ MGI+T+ DLA D + H + G+ ++ Sbjct: 178 PLPVQDLLYVGPSTQKSLNKMGIRTIGDLACADENQLHTHIGKMGSLLKSFANGDDTSEV 237 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + + + + +R+ + A + + R+ + + I+ + Sbjct: 238 NPHTDPAKSVGNGMTTPQDLVSIEEVRRVLFVLAESVSSRCRNIEKKGSVLRICIRNN-- 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-A 356 S KL PT I+N + ++ W + + L D S Sbjct: 296 ----QLETLSRQKKLNQPTNTVDQIVNESLFLIERYWDQKQPLRSITITLSDLVSTTQPI 351 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 QL+LFD++ + +D++ + G + A +Q+ + + Sbjct: 352 QLSLFDESV-----SAIDETIDSIRDRFGHHAIKRANVLLQKNLEKR 393 >UniRef50_D0LIK9 DNA-directed DNA polymerase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIK9_HALO1 Length = 409 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 152/401 (37%), Gaps = 26/401 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E P L GKPV+V + G V A + EA+ GV P Sbjct: 8 VLHVDLDAFFASVEQRDDPSLRGKPVLVGGSAERGVVAAASYEARRYGVHSAMPMAVALR 67 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTDF 119 + V + YA+ S + L+ SP VE S+DEAF DLTG D Sbjct: 68 RCPQA--VVVRHSMGRYAEASRAFFAILDHFSPLVEPLSLDEAFLDLTGSERLLGDARTV 125 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 + I+ V L V VG+A TK LAK+A+ K + + +R + L Sbjct: 126 AQTIKDRVRAELSLVVSVGVASTKFLAKIASDIDKPDG------LCVVEPDRVESFLHPL 179 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQLE 238 PV +WG+G KL MG++T+ D+A + + G + Sbjct: 180 PVSRLWGVGAVTQDKLHQMGLRTIGDVARYPSSVLSARLGKSMGAHLSALASGYDPRPV- 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E I +F + + + A R A +LR R + IK + F Sbjct: 239 ERPGKPVSIGHEETFEVDLGRKSDIAAVLLGQADRVAARLRRADLRARVVQLKIKYADFR 298 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-----AGHRYQKAGVMLGDFFS- 352 L + L T D I A L + + + GV L Sbjct: 299 L------LTRRRSLADATVDGGVIGAVAVAMLGELEVAENRGKAYAVRLCGVSLSGLEDR 352 Query: 353 QGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 +G QL L + EQL +D ++A+ G G + A Sbjct: 353 EGPRQLTL--GEPRQQQGEQLGDALDRIHARFGEGVVKRAV 391 >UniRef50_Q2P7M9 DNA polymerase IV n=22 Tax=Proteobacteria RepID=DPO4_XANOM Length = 359 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 146/372 (39%), Gaps = 21/372 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P L GKPVVV V A + EA+ G++ P + + Sbjct: 4 IVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVRAER 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDF 119 L + ++ Y +S +V + VE S+DEA+ D+T + T+ Sbjct: 64 LCPNA--IFVPPDFVRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTQAKTGMQLATEI 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 + IR + + T LT GIA K LAK+A+ K + + R + L Sbjct: 122 AQLIRTQIREETELTASAGIAPNKFLAKIASDWRKPDGQF------VIAPSRIDAFLLPL 175 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V+ + G+G+ + KL A+GI TV DL + ++ HF + R RG +E Sbjct: 176 KVNRIPGVGKVMDGKLAALGIVTVADLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEP 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 Q + +F E + ++ I A + R + R + +KTS F + Sbjct: 236 -DQDVQSVSSEDTFSEDLA-LDALDTHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRI 293 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDF--FSQGVA 356 + S P + A + RY+ GV L F +G Sbjct: 294 ------LTRSCTPEQPPVSQEALAQIALALTRRVELPAQTRYRLVGVGLSGFSNVEEGAV 347 Query: 357 QLNLFDDNAPRP 368 Q LF + Sbjct: 348 QGQLFGEIPQAE 359 >UniRef50_Q2S2C0 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=Q2S2C0_SALRD Length = 373 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 82/364 (22%), Positives = 148/364 (40%), Gaps = 20/364 (5%) Query: 2 FALCDVNAFYASCETVFRPD-LWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYA E PD GKP+ V + G V + EA+ GV P + Sbjct: 21 IVHVDMDAFYAQIEQRDFPDRYAGKPIAVGGDPPRGVVQTASYEARPYGVHSAQPAVEAD 80 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 ++ S ++Y + S R+ L + VE S+DEA+ D+T + R T Sbjct: 81 RKCP--DLIFVSPRMDVYQEESKRIRKILRRYTDLVEPLSLDEAYLDVTEPKTGRPSGTL 138 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 R +RA + + T LT G+ K +AK+A+ K + + + Q + ++ Sbjct: 139 IARRLRAEIYEETGLTASAGVGPGKFVAKVASDLDKPDG------LTVVRPDEQMEFIAQ 192 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++ GIG + K+ +GI+T DL +T R + HF G ++ Sbjct: 193 LPIEKFHGIGPVTAAKMQELGIQTGADLQETPERTLIHHFGKRGRHFKTLAVGTDDRPVQ 252 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + R+F E I +M + A R A++LR ++ R ++ +K+ Sbjct: 253 PDR-DRKSVGAERTFPEDIARAETMLDRLSPIAERVAQRLRQANRKGRTVTLKLKSHDHQ 311 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-- 356 ++ + + P + ++ R L + G+ + + A Sbjct: 312 VS------TRQTTVDRPLRAEDALMTITERLLRRPHPPDEPVRLLGISVSSLTDEERAGG 365 Query: 357 QLNL 360 QL Sbjct: 366 QLEF 369 >UniRef50_B7AQS7 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQS7_9BACE Length = 413 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 94/419 (22%), Positives = 169/419 (40%), Gaps = 28/419 (6%) Query: 1 MFALCDVNAFYASCETVF-----RPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMG 52 +F DVN+ + S + DL V + G V+A++ A GV+ G Sbjct: 4 VFFHVDVNSAFLSWSALKLLKEGHDDLRLIASCVGGDEKSRHGIVLAKSILAAQAGVRTG 63 Query: 53 DPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN 112 +P + + G+V ++ Y S +++ ++E +P VE YSIDEAF D+TG++ Sbjct: 64 EPLYMARKKCP--GLVTVKPQFDWYVKNSRAMIAIMQEFTPDVEQYSIDEAFLDMTGMQT 121 Query: 113 CRDL-TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 + ++ + TV +GI+ + LAK+A+ K + T + Sbjct: 122 LMGPPLEAAARLKDRIRDELGFTVNIGISSNRLLAKMASDFEKPDKIHTL------FPDE 175 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 K M LPV ++G+G+ +K L+ MG T+ D+A D + + + G Sbjct: 176 IDKKMWHLPVGSLFGVGKSTAKALNNMGFYTIGDVAAADRGLLVSKLGKMGDMAWNYANG 235 Query: 232 EPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTF 291 + + + S + GE ++ I S A A +LR++ + ++ Sbjct: 236 IESVAIVRHEAKENSYGNSVTTGEDVSSIDVALGIIMSLAESVALRLRTDGKKAGVVTVT 295 Query: 292 IKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 + + F +S L PT + I A + L +W+A + G+ G Sbjct: 296 LVDTEFN------RHSHQCSLEYPTNTTDVIYENAQQLLYEMWKADRPVRLIGISAGKAA 349 Query: 352 SQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPR 410 + Q++LF D ++L MD + K G + A + K LS Sbjct: 350 HEEFEQMSLFAD-ERTDKLKKLDAAMDEIRNKFGEEAVVRARLLGSE----KHERLSKA 403 >UniRef50_C4F8L3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8L3_9ACTN Length = 432 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 163/403 (40%), Gaps = 25/403 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 L D++AF+AS E + P+ GKPV+V + G V + EA+ GV+ + K Sbjct: 23 IGLMDLDAFFASVEQLDHPEWRGKPVIVGGSPEKRGVVSTCSYEARVYGVRSAMSSAQAK 82 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + +++ Y +MS RVM+ L + +P V+ SIDEAF D++ R C Sbjct: 83 RLCPEA--IWTPGHFDRYREMSARVMAILADETPFVDRVSIDEAFFDISPGRFCDEHPIQ 140 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I V +T +G+ + KT+AK+A+ K + + + ++ Sbjct: 141 IAQRISRRV-SELGITCSIGLGRNKTVAKIASERDKPRG------LTIVTPGTEHGFLAP 193 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + GIG L +GI+T+ LA+ + F + E R G ++ Sbjct: 194 LPVRAMSGIGAAAESALARVGIRTLGQLAEASDGLLSPIFGINTELVRRRAAGLEVSEVR 253 Query: 239 EFAPT--KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + I R+F +TD ++ AI + +LR R ++ +K S Sbjct: 254 AIDAPDDVKSISNERTFAHDLTDPSDVKAAIQLLSESVGARLRRRGLAGRTVTLKLKYSF 313 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ-GV 355 G + KL T D A L +IW G + AGV + DF Sbjct: 314 GE------GRTIQRKLAHATDDENVFGAVARDLLASIWTEGMHIRLAGVGVSDFGPDPHG 367 Query: 356 AQLNLFDDNAPR----PGSEQLMTVMDTLNAKEGRGTLYFAGQ 394 Q +LF R L +D L + G + F Sbjct: 368 IQTDLFCAVDERGAMASDKRDLAVTLDALRERFGNDAVAFGRS 410 >UniRef50_A0L3I2 DNA-directed DNA polymerase n=1 Tax=Shewanella sp. ANA-3 RepID=A0L3I2_SHESA Length = 416 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 156/421 (37%), Positives = 238/421 (56%), Gaps = 10/421 (2%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + ALCD N FY+SCE +F P GKP++V+SNNDG + + EA ALG+K P+F+ + Sbjct: 4 IIALCDGNKFYSSCEQIFNPQYRGKPLIVVSNNDGMTVTLSPEAAALGLKKFTPYFQVAE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 R GVV SSNY LY+++S++ M YSIDE F + ++L+ G Sbjct: 64 FCRANGVVVCSSNYALYSEISSQFMKVASRECFSYFPYSIDEIFAEFGNDDTPQNLSILG 123 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R++R V + L +GVG+ T TLAK ANHAAK+ GV + + ++ A+ Sbjct: 124 RKLRHDVWREVRLPIGVGLGDTLTLAKAANHAAKRLG--YRGVC-VIKAHNREAILGAML 180 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 DVWG+G+RI ++L +MGI T L LA + RK F V +ERT+ +L G ++ Sbjct: 181 TTDVWGVGKRIGQRLSSMGIHTALQLAQMKTKTARKMFGVNIERTIFKLNGTKAFNWDDM 240 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 K++I +RS G+RIT +++A+ +A AA KLR + R + F +TS + + Sbjct: 241 PVNKRQIFSTRSVGQRITTIEGLKEALSFHACEAARKLRGQKSVARCLVFFAQTSAYDKH 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 G S ++ L PT DS I T ++++ + A Y + GV L D QL++ Sbjct: 301 GV-SGFSRTIHLPAPTSDSMIISQQITSAVESFY-AAVPYYRVGVGLLDIEP--GLQLDM 356 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLR 420 F+DN +P LM+VMD LN + G+G ++ A GI+++WQM+RA LSP Y T +++ Sbjct: 357 FNDNLGKP---ALMSVMDRLNEQMGKGAVFVAANGIEKKWQMRRAFLSPSYLTNWNEIPT 413 Query: 421 V 421 + Sbjct: 414 I 414 >UniRef50_C6W6Q9 DNA-directed DNA polymerase n=3 Tax=Bacteroidetes RepID=C6W6Q9_DYAFD Length = 416 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 160/400 (40%), Gaps = 26/400 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++ F+ S E L KP++V + G V A + E + GV G P + Sbjct: 12 ILHFDLDTFFVSVERKQDSRLQNKPILVGGTGDRGVVAACSYETRQFGVHSGMPMKMARM 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L V+ N E Y+ S V + + P E SIDE + DL+G+ + Sbjct: 72 LCPEATVI--RGNGETYSKHSKEVSEIISQHVPVFEKASIDEFYADLSGMDKYFNCYGMA 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 ++R +++ T L + G+A K ++K+A AK + ++ ++ + Sbjct: 130 SDLRQRIIRETGLPISFGLATNKLVSKVATGEAKPNNQLR------VEPGAEKTFLAPME 183 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + +G ++++ L+ +GI+ V + + + + K F G + F Sbjct: 184 VQKIPMVGDKMNQTLNNLGIRYVKTIQEMPMEMMGKVFGKNGVALWNRANGLDNSPIVPF 243 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ I R+FG+ D MR+ + + A A +LR+ + +S I+ S F Sbjct: 244 H-ERKSISSERTFGKDTGDVRKMREMVRAMAETLAFQLRTGDKLTSCVSVKIRYSDFN-- 300 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 S +K+ T +I R D ++ + GV D + G Q+NL Sbjct: 301 ----TFSKQLKIA-YTSADHVLIPHIERLFDQLYNRRMMVRLVGVSFSDLVT-GNYQINL 354 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKE-----GRGTLYFAGQG 395 FDD R L MD + K G L +A Sbjct: 355 FDDTEERLN---LYQAMDYIKTKYAYNKDGDQILTWASTM 391 >UniRef50_B6WBQ9 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBQ9_9FIRM Length = 399 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 82/405 (20%), Positives = 159/405 (39%), Gaps = 21/405 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFKQ 58 D+N+ YAS E P L K + V N G ++A++ EAK +GVK G+ ++ Sbjct: 5 ILHSDMNSCYASIEAKLNPKLKNKAMAVCGDPRNRHGIILAKSQEAKIMGVKTGEAIWQA 64 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLT 117 K ++ +YE Y + S + + RVE + +DE + D++ Sbjct: 65 KIKCP--NLILVPPHYEKYLEFSRKARKIYYSYTNRVEPFGLDECWLDVSESLKLFGSGE 122 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + +IR + + +TV VG++ K AKL + K L E ++++ Sbjct: 123 EIANQIRERMKKELGITVSVGVSFNKVFAKLGSDLKKPDA------TTLIKKENFKEIVW 176 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L + + GIG+ +KL+ +GI ++ DLA TD IR + + G + Sbjct: 177 PLDISSIIGIGKATKRKLNGIGIYSLGDLAKTDSDAIRGILGINGLYLWQYANGLDDRPV 236 Query: 238 EE--FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ + + I S + E + + + +++LR + ++ F++ + Sbjct: 237 KDYSYREVIKTIGNSSTLVEDLYTNEEVYNIFQILSLNVSKRLREANLSSMGVNIFVRDN 296 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG- 354 + + PTQ S + A ++ + G+ + Sbjct: 297 N------LFSYEFQSPINNPTQSSIILSEKAIDLFKKKYKWNFPIRALGIRAINLVDDKI 350 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 AQ ++F D E L + + K + L FA ++ Sbjct: 351 PAQTDIFSDYKKIIKKENLDKAIYDIRKKYNKDVLTFASLKNNKK 395 >UniRef50_D2NU69 Nucleotidyltransferase/DNA polymerase involved in DNA repair n=2 Tax=Rothia mucilaginosa RepID=D2NU69_9MICC Length = 479 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 159/383 (41%), Gaps = 25/383 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D++AF+ + E + P L G+P++V V + + EA+A GV+ G P + + Sbjct: 27 VIMHLDMDAFFVNVELLENPALRGEPIIVAPLGPRSVVCSASYEARAHGVRSGMPLSRAR 86 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 +L V+ + Y S VM+ L +LSP VE S+DEAF DLTG + +D Sbjct: 87 NLSPNATVLPLRGD---YRHYSRAVMAILNDLSPYVEQVSVDEAFVDLTGAYLHGQDPVA 143 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + R + Q L G+A K LAK+A+ +K + + ER ++ + Sbjct: 144 LAQSARDRIAQELSLPSSAGVAPNKLLAKMASTGSKPNG------LWVIPPERVQEFLDP 197 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQL 237 V ++WG+G + +++L GI T+ + + ++++ F E RG + Sbjct: 198 RKVSNLWGVGVKSTEQLSRYGIHTIAQMRSMSLDWLKERFGTAQGEHLWAMARGIDERPV 257 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + +F TD + AI + + ++LR+ + +S I+ S F Sbjct: 258 VTEREE-KSMGGEHTFETDTTDAQEVSAAIRELSLKLGKRLRAAGKLAGGLSLKIRYSTF 316 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-----AGHRYQKAGVMLGDFFS 352 ++ ++ L P I + A +L A A + GV Sbjct: 317 E------THTRAIALNVPVDSGMQIASLALEALRADEILVGQAAPRALRLIGVRAEKLAH 370 Query: 353 -QGVAQLNLFDDNAPRPGSEQLM 374 + Q LFD S + Sbjct: 371 AEDGVQQTLFDSIESGANSRSIQ 393 >UniRef50_A9KLV9 DNA-directed DNA polymerase n=8 Tax=Clostridiales RepID=A9KLV9_CLOPH Length = 432 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 98/413 (23%), Positives = 160/413 (38%), Gaps = 26/413 (6%) Query: 1 MFALCDVNAFYASCETVFRP-------DLWGKPVVVLS---NNDGCVIARNAEAKALGVK 50 +F DVN+ + S E +R DL P V+ N G V+A++ AK L + Sbjct: 18 IFFHIDVNSAFLSWEAAYRLHVLGESVDLREIPSVIGGDKENRHGIVLAKSTSAKKLKIH 77 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+ +V NY+ Y S +M L SP+VE YSIDEAF D++G Sbjct: 78 TGEALGAAVQKCP--NLVIIPPNYQRYVKASKSLMEILHRFSPKVEQYSIDEAFVDMSGS 135 Query: 111 RNCRD-LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 ++ + + TV +G++ K LAK+A K T Sbjct: 136 ELLYGGPVIVANNLKDLIEEELKFTVNIGVSSNKLLAKMAGELKKPNLVHTM------FP 189 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E K M LPV +++ +GR KKL +GIKT+ +LA TD++ ++ HF E + Sbjct: 190 EEIPKKMWPLPVGELFFVGRATEKKLFNLGIKTIGELAQTDVKILKAHFGKYGEVLYQFS 249 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G L + S + I + S + +LR + + +S Sbjct: 250 HGIDESPLFVPLEANKGYGNSVTTPYDIVTMEHANLVLLSLSETVCTRLRMDGVKGQCVS 309 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 + T F S L + + + ++ A R +W ++ GV Sbjct: 310 VSVTTDTFQ------RASHQGMLFSASNTTMEVYRFACRLFKNLWDGRTPIRQMGVHTSR 363 Query: 350 FFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 + Q NLFD +L +D++ + G ++ A + M Sbjct: 364 ITKESTMQYNLFD-WDRYEKLSKLDETIDSIRKRYGDDSVMRACFLNTSTYHM 415 >UniRef50_D2MQ51 Putative DNA polymerase IV n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ51_9FIRM Length = 395 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 170/387 (43%), Gaps = 24/387 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN-NDGCVIARNAEAKALGVKMGDPWFKQK 59 ++ D+NAF+AS E + P L GKP+VV V + EA+A G+ K Sbjct: 4 IYFHVDLNAFFASAEILRDPSLKGKPIVVSGQTKRSVVSTASYEARAYGIHSAMSIILAK 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 L ++ +Y Y +S+ M+ + SP +E SIDE + D+T ++ + D Sbjct: 64 KLCPDLEII--EGHYSYYRSLSDEFMTIVRSFSPYMEKASIDECYVDVTDVIQQYKHPLD 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++ + Q+T L +GI LAK+A+ K + + + + Sbjct: 122 LAVLLQKAIYQKTGLGCSIGIGPNLFLAKMASDMKKPMG------ITVLRIRDVEAKLWP 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADT-DIRFIRKHFNVVLERTVRELRGEPCLQL 237 LPV + GIGR+ K++A+GIKT+ DLA+ I+ + K F + + + RG L Sbjct: 176 LPVHKMRGIGRKTLPKVEALGIKTIGDLANYQPIQDLGKIFKNSTDSLLEKCRGIDRTPL 235 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 E ++ + S + E I+DY +R + S + + +L E + R IS I F Sbjct: 236 -ELDWQRKSLGVSETLLEDISDYEELRGLLRSLSKKLHHQLEKEKRIGRAISIRITYYNF 294 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-- 355 S S+ + DI + A + D W+ + G+ + DF + Sbjct: 295 R------NVSRSLSVKQGIYLEPDIFDLALQLFDQYWEYDEPVRLLGITITDFMDEHQAI 348 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNA 382 QLNLF++ P ++D +N Sbjct: 349 QQLNLFEEEKIDPTQ----QIIDEINR 371 >UniRef50_A1KUQ3 DNA polymerase IV n=34 Tax=Proteobacteria RepID=DPO4_NEIMF Length = 352 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 150/363 (41%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E +P L G+PVVV + A + EA+ G+ K Sbjct: 6 IIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATAKR 65 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L + V +++LY +S ++ + + +E S+DEA+ D+T +N ++ Sbjct: 66 LCPQA--VYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASEV 123 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 +EIRA + T LT GIA K LAK+A+ K + + + + L Sbjct: 124 AKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQF------VLPPHKVMAFLETL 177 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G+ KK+ ++G++T DL + + HF R +RG ++ Sbjct: 178 PLGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKA 237 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + +I + E + + A ++ ++ + ++ +KT F + Sbjct: 238 ER-ERLQISTEITLPEDLP-LEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRI 295 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHR-YQKAGVMLGDFFSQGVAQL 358 + S L D ++ AA + + ++ G+ +G + Q Sbjct: 296 ITR--TLTYSSVLP----DCAALLQAAQMLIARVPPQTEDAFRLIGIGVGHLVPKNQQQ- 348 Query: 359 NLF 361 +L+ Sbjct: 349 DLW 351 >UniRef50_C7RFL5 DNA-directed DNA polymerase n=3 Tax=Anaerococcus RepID=C7RFL5_ANAPD Length = 413 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 82/404 (20%), Positives = 160/404 (39%), Gaps = 21/404 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+NA YAS E P L G P+ V N +G ++A++ EAK GVK G+ ++ Sbjct: 4 VILHSDMNACYASIEQKLNPKLKGIPMAVAGNPKNRNGIILAKSQEAKEAGVKTGEALWQ 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL- 116 + +Y+ Y S E + +VE + +DE F D+TG + Sbjct: 64 AFAKCP--DLTIVPPHYDEYLKHSKLARKIYYEYTNQVEPFGLDECFLDVTGSAHLFGTG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + +IR + + +TV VG++ K AKL + K V + + ++++ Sbjct: 122 EEIANKIRERMKEEVGITVSVGVSFCKIFAKLGSDMKKPDA------VTIIGEDNFKEIV 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV ++ G+GR +KL+ +GI T+ +LA+TD IR + G Sbjct: 176 WPLPVREMVGVGRATERKLNGIGIFTLGELANTDPDLIRNLLGINGVYLWEYANGLDIRP 235 Query: 237 LE--EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + + I S + + + + + + + +++LR + F++ Sbjct: 236 VHDRDHKEPVKTIGNSSTCRKDLVNNREVFNVLQELSFSVSKRLRQAGLEAFGVEIFVRN 295 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQ- 353 + + + +Q S + ++ + G+ + Sbjct: 296 NE------LQSYNFQKPIKLASQSSIVLAREGFDLFKEKYKWDFPVRAVGIRAIKLRKEG 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQ 397 G +Q+++F D E T + + K G+ + F G Sbjct: 350 GGSQMDVFSDYKKLIKDENCDTALYKIRQKYGKDAISFLGLMRD 393 >UniRef50_B1YK83 DNA polymerase IV n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=DPO4_EXIS2 Length = 360 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 85/363 (23%), Positives = 144/363 (39%), Gaps = 21/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E RP L G PV+V + G V + EA+ G+ P + Sbjct: 6 IIHVDMDAFYASVEQRDRPHLKGVPVIVGGPPHARGVVATCSYEARKYGIHSAMPSRRAF 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV-RNCRDLTD 118 L R V +E+Y +S ++M E++P VE S+DEA+ D+T T Sbjct: 66 QLCPRA--VFVRPRFEVYRAVSAQIMELFLEVTPLVEPLSLDEAYLDVTENNLQMTSATH 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + I A + +RT LT G++ +K +AK+A+ K + + + +S Sbjct: 124 IAQYILAEIKRRTGLTASAGVSNSKLVAKIASGHQKPNG------LTVLPPDAVLPFLSG 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQL 237 L + D+ G+G+ + L G TV D+ + I +R GE + Sbjct: 178 LKIGDLHGVGKVTEQTLQKHGFNTVADIQQSPIAELRGLLGRDRGTELYTMAHGEDERMV 237 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 ++ I +F E D ++ + + A + L + CR ++ KT F Sbjct: 238 RPHRE-RKSIGSESTFEEDTEDIDTIFETLKREALSVVKTLNQKELVCRTVTIKWKTEDF 296 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQGVA 356 S L T D ++ T+ + I +G + G+ + Sbjct: 297 Q------SRSKRYTFLEETADEDTLLRVTTKLFNEIEFSG-PIRLIGMSVSHLEAPPLSK 349 Query: 357 QLN 359 QL Sbjct: 350 QLT 352 >UniRef50_A8RBK8 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBK8_9FIRM Length = 389 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 91/403 (22%), Positives = 164/403 (40%), Gaps = 23/403 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D+N+F+AS E + L G+PVVV + V + EA+ GV P Sbjct: 5 VIFHIDLNSFFASAEVLKNSALEGQPVVVAGMHRRSVVSTASYEARNYGVHSAMPLHMAL 64 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTD 118 + + +V +Y Y ++S R + ++ SP +E SIDE + D+T D Sbjct: 65 EKCPQ--LVVVQGDYAWYEELSRRFFNYVKRFSPYLEPASIDECYIDVTEAIRAYKRPLD 122 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I+ V + L +G+ +K LAK+A+ K + + + + + Sbjct: 123 LAWRIQKGVYEDLRLPCSIGVGPSKFLAKMASDMRKPMG------ITVLRRQEIERKLWP 176 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLAD-TDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L + D++GIG++ L+ GI T+ D A+ + I + ++ RG +L Sbjct: 177 LSIADMFGIGKKTVPLLERQGIYTIGDFANPANEAKIMALMGKHAYQLIQNARGFGSNRL 236 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + Q I S + I +Y ++ A + +++ + E IS I+ + F Sbjct: 237 DYNTSV-QSISQSTTLDTNIVEYEEVKSVFKRLANKLSQRAKQEDLRGALISISIRYADF 295 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA- 356 S + T D+ ++ A D G + G+ LG FS+ Sbjct: 296 TNAV------RSTTISEYTNDADVLLEHALLLFDQHNN-GKEIRHLGIGLGSLFSKTRTV 348 Query: 357 -QLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 Q+NLF D P ++ LN + G L A + +++ Sbjct: 349 DQINLFQDVKAEPTDS--TDILKQLNKQLSTGKLMKASELLKK 389 >UniRef50_B9YCM9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM9_9FIRM Length = 409 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 102/405 (25%), Positives = 173/405 (42%), Gaps = 24/405 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQK 59 + D+NAF+AS E + P L GKPVVV V + EA+ GV P + Sbjct: 16 VIYHIDLNAFFASAEILLDPSLEGKPVVVSGLTKRSVVSTASYEARQFGVHSAMPINEAL 75 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + +V ++ Y +S + +S +++ + RVE SIDE + D++ + D Sbjct: 76 KLCPQ--LVVVKGHHGYYEQLSEQFISYVKKYTDRVEQASIDECYADMSQAIHRFPRPLD 133 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +++ +L HL +G+A K LAK+A+ K G+ L E K + Sbjct: 134 LAWQLQQELLTDLHLKCSIGVAPNKFLAKMASDMKKP-----MGITVLRKQEVPVK-LWP 187 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP++D+ GIG++ + ++ A+GIKT+ DLA D +R ++ GE ++ Sbjct: 188 LPIEDMRGIGKKTAPQMKALGIKTIGDLAAADPEQLRPLLGKNTMTYIQRANGEDDREII 247 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 A + + S + + +R A + +E++ E + +S I+ F Sbjct: 248 SDAEI-KSMSQSTTLNYDFSTEEEVRTLFRKLANKLSERMIEEDKMGTIVSISIRYFDFN 306 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS--QGVA 356 N S KL P S D+ A D + + G+ +G S Sbjct: 307 ------TNVRSRKLDHPVYRSEDLFELAMELFDENY-EDQPMRHLGIGVGSLSSIHDQKI 359 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNAK--EGRGTLYFAGQGIQQQ 399 Q+NLF+ P L ++ LN + G G L A I++ Sbjct: 360 QMNLFEAPPVDPACATLD-LISQLNQQLTLG-GKLTTAAALIKKT 402 >UniRef50_Q8UFV3 DNA polymerase IV 1 n=118 Tax=Alphaproteobacteria RepID=DPO41_AGRT5 Length = 405 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 164/394 (41%), Gaps = 21/394 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E P+L KPV+V G V A+ GV+ P FK + Sbjct: 23 IAHIDCDAFYASVEKRDNPELADKPVIVGGGKRGVVSTACYIARIHGVRSAMPMFKALEA 82 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD--LTDF 119 V + E Y+ + + + ++EL+P V+ SIDEAF DL+G Sbjct: 83 CPDA--VVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 + V + ++V G++ K LAK+A+ K + ++A Sbjct: 141 LAKFTGRVEKEVGVSVSAGLSYCKFLAKVASDLQKPRG------FSVVGEAEALSFLAAR 194 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G+ + L+A GI+ + L + + + + + V+ +R R RG + Sbjct: 195 PVTTIWGVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHN 254 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P + + +F I+ + + + S + + A +L+ + + +KT+ F Sbjct: 255 NDPV-KSVSSETTFFHDISRHEDLVPILRSLSEKVAWRLKKSGIAGQTVVLKMKTADFK- 312 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-VAQL 358 + + +L PTQ + I L+ G +++ G+ + D G Sbjct: 313 -----SRTRNRRLDDPTQLADRIFRTGLALLEKETD-GTKFRLIGIGVSDLRDAGLADPP 366 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 +L D A R + MD L K G+G++ Sbjct: 367 DLVDRQATRRAAA--EAAMDKLRDKFGKGSVETG 398 >UniRef50_C1F962 Putative DNA polymerase IV n=2 Tax=Bacteria RepID=C1F962_ACIC5 Length = 374 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 140/357 (39%), Gaps = 19/357 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E P+L GKPVVV V A + EA+ GV+ P + Sbjct: 16 IVHVDMDAFYASVEQRDAPELRGKPVVVAWRGRRSVVCAASYEARQFGVRSAMPAVTAER 75 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDF 119 L + + ++ Y +S V E + +E S+DEA+ D+T + T Sbjct: 76 LCPQA--IFVPPDFTRYKAVSRAVREIFERHTDLIEPLSLDEAYLDVTHNKTGLPTATKV 133 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IR + + LT G+A K LAK+A+ K + + + + L Sbjct: 134 AITIRRQIREELSLTASAGVAPNKFLAKIASDWRKPDG------LFVIQPQDLATFLPPL 187 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V + G+G+ ++L +GI+T DL D+ + +F R RG + Sbjct: 188 AVGRIPGVGKVTEERLARLGIRTAGDLQHYDLATLESNFGRYGLRLYHLARGVDHSPVTP 247 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 PT + + +F I + I + + R E + R + +KT F + Sbjct: 248 NRPT-KSVSAEDTFEADIP-LSATEPVIRRLSEKVWNASRREARIARTVVLKLKTGDFHI 305 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-AGHRYQKAGVMLGDFFSQGV 355 + + S+ TP ++ A + + A Y+ GV L +F Sbjct: 306 H------TRSLTPETPPASCEELTAIALSLRERVDLGADRLYRLIGVGLSNFRDPEP 356 >UniRef50_Q8VMP6 RuvB protein n=4 Tax=Pseudomonas RepID=Q8VMP6_PSEPU Length = 402 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 177/398 (44%), Positives = 243/398 (61%), Gaps = 4/398 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 +F L DVN+FY SCE +FRP+L +PVVVLSN+DGC++AR EAKALG+KMGDP+FK ++ Sbjct: 9 IFGLVDVNSFYCSCERIFRPELRHRPVVVLSNSDGCIVARTNEAKALGLKMGDPYFKVRN 68 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + GV FSSNY LY ++S+RV + L P E YSIDE F +L G+ + D G Sbjct: 69 FLEQNGVAVFSSNYTLYGELSHRVGVAIASLVPEWEQYSIDELFVNLDGLPEP--IIDVG 126 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R I+A VLQ T L VGVGI TKTLAK A HA+K W+ +TGGVVDL + L+ +P Sbjct: 127 RAIQARVLQWTALPVGVGIGHTKTLAKAAQHASKVWREKTGGVVDLRKPDAVEWLLRRMP 186 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 VD+VWGIG R+ L GI T +L+ D R + + ++VVLERT+REL+GE C+ LE+ Sbjct: 187 VDEVWGIGSRMRDNLARDGITTAWELSQADARAMGRKYSVVLERTIRELQGESCMDLEQT 246 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 KQ I S+ FG+R+ +++A+ +Y RAAEKLR + C + I+TS F + Sbjct: 247 VAPKQTICSSKMFGQRVHTLQGLQEALATYIHRAAEKLRLQRSLCGAMRIGIQTS-FHGD 305 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 P Y N+A+ PT D R + A ++ + I++ G Y KA V+L D +G +L Sbjct: 306 GPKYANAATCIPAYPTDDVRQLTKYALQAAEQIYRPGFAYSKAEVLLLDLRKRGEYTQDL 365 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ 398 F + P S+ LM MD +N + G L A Sbjct: 366 FSPSQP-ERSDALMATMDKINRRWGHDCLRTAAGATDP 402 >UniRef50_Q6AL48 DNA polymerase IV n=1 Tax=Desulfotalea psychrophila RepID=DPO4_DESPS Length = 376 Score = 366 bits (940), Expect = e-99, Method: Composition-based stats. Identities = 80/353 (22%), Positives = 136/353 (38%), Gaps = 18/353 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AF+AS E RP+L KP++V G V EA+ G+ + Sbjct: 6 IIHIDMDAFFASIEQRDRPELRKKPLIVGGLPRGRGVVATCCYEARRYGIHSAMSANRAY 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L V LY ++S ++M+ E + +VE S+DEAF D+T T Sbjct: 66 KLCPHA--VFVKPRMVLYKEVSLQIMAIFREYTKKVEPLSLDEAFLDVTEYLQINGSATL 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 REI A + RT L+ G++ K LAK+A+ K T E R+ + Sbjct: 124 LAREICALIKLRTDLSASAGVSYNKFLAKIASDLKKPGGIST------VPPEEARQFIDR 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L + +G+G+ K+ ++GI+T DL F+ K F RG + Sbjct: 178 LSIGKFYGVGKITKSKMQSLGIQTGKDLRQYSKDFLMKRFGKAGSFFFYNARGLDERPVC 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + ++ I + + +R + + ++ + L + Q + ++ I+ S F Sbjct: 238 PYQN-RKSIGKETTLVQDTNRPEEIRDILINLSSLLGKALENNSQLAQTLTLKIRYSDFT 296 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 + S+ L P DI L + G+ L Sbjct: 297 ------TTTRSLSLQKPFSCPADIEECLPSLLTNCNLTHKPIRLLGISLSKLT 343 >UniRef50_B0VP90 DNA polymerase IV, devoid of proofreading, damage-inducible protein P n=12 Tax=Acinetobacter RepID=B0VP90_ACIBS Length = 363 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 142/347 (40%), Gaps = 19/347 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E RPDL PVV+ + + A + A+ G++ + + Sbjct: 4 IIHIDMDAFYASVELRERPDLRHLPVVISSHHPRAVIAAASYPAREFGLRSAMSMSQARK 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 L + VV N+E Y +S ++ S ++ + +E S+DEA+ D+T ++ T+ Sbjct: 64 LCPQ--VVIIEPNFEKYRAISAQIHSIFQQYTTLIEPLSLDEAYLDVTENLKQIASATEV 121 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IR + ++T LT G+A K LAK+A+ K + + + + L Sbjct: 122 AMHIREDIFRQTGLTASAGVAPNKFLAKVASDWNKPNG------LFVIKPSQVASFIQDL 175 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G+ +KL + + T+ DL + + HF ++ +G ++ Sbjct: 176 PLKKIPGVGKVTQEKLQQLELHTLGDLQKIEEAVLVHHFGKYGQQLYLYAQGIDNRPVQA 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 +Q+I +F T + A + + L + R ++ +K F Sbjct: 236 ER-ARQQISKETTFDSDFT-LAQCQSYWHGLAEKVWQSLEKKQLNARGVNIKLKLKNFQ- 292 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA-GHRYQKAGV 345 S P +D+I L+ + +++ GV Sbjct: 293 -----TLQHSKSFKNPIHSQQDLIQVLFLLLNEMHIPENFQFRLIGV 334 >UniRef50_C7QBJ0 DNA-directed DNA polymerase n=3 Tax=Actinomycetales RepID=C7QBJ0_CATAD Length = 834 Score = 364 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 149/392 (38%), Gaps = 39/392 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AFYAS E + +P L GKPVVV N G V + EA+A GV + Sbjct: 12 IFHVDLDAFYASVEQLHKPSLRGKPVVVGGIGNRGVVSTASYEARAFGVHSALATGIARR 71 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL----------TGV 110 + + Y S RVM+ + ELSP VE S+DEAF D+ T Sbjct: 72 RAPNAAYLI--PRFGAYQAYSERVMALMHELSPLVEPLSLDEAFIDISHLFGSLDTTTPH 129 Query: 111 RNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLE 170 + ++R + T LT VG +K +AK+A+ A K + + Sbjct: 130 NATLEARRIAEDLRTRIKNETGLTASVGAGTSKLIAKIASDAEKPDG------LVVIEPG 183 Query: 171 RQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVREL 229 ++ + LPV +WG+G +++L +G TV DL + + Sbjct: 184 TEQTWLDPLPVRALWGVGPATAERLRKIGATTVADLRTLSLTELTTVVGASYGTTLYAIA 243 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 RG+ + + + ++ E + D ++ + R + ++R + R I+ Sbjct: 244 RGQDDRDVSTDREM-KSVSVEDTYAEDLLDPATITAHMDDLVTRLSTRIRKAGRSGRTIT 302 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSL----DAIWQAGHRYQKAGV 345 ++ F S S PT D I A R L A Q+ + GV Sbjct: 303 IKVRGHDFT------TVSRSETTPNPTDDLTTIRAATHRMLPGAVAAATQSVPGIRLLGV 356 Query: 346 MLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVM 377 L AQ++LF L + Sbjct: 357 GLTGL--AEWAQVDLFTAAED------LDAAL 380 >UniRef50_B9JVH1 DNA-damage inducible protein n=18 Tax=Alphaproteobacteria RepID=B9JVH1_AGRVS Length = 428 Score = 364 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 161/393 (40%), Gaps = 21/393 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 A D +AFYAS E PDL KP+++ G V A+ GV+ P FK + Sbjct: 46 AHIDCDAFYASVEKRDNPDLIDKPLIIGGGKRGVVSTACYVARIHGVRSAMPMFKALEAC 105 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD--LTDFG 120 V N E Y+ + +V + +EEL+P V+ SIDEAF +L G Sbjct: 106 PDA--VVIPPNMEKYSRVGRQVRAMMEELTPLVQPLSIDEAFLELKGTEALHHAPPALVL 163 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + + +TV VG++ K LAK+A+ K + ++ P Sbjct: 164 ARLARRIESEIGITVSVGLSYCKFLAKVASDLQKPRG------FSVVGEAEALDFLAPRP 217 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V +WG+G+ + L+ GI+T+ L + + + + + +R R +G + Sbjct: 218 VTTIWGVGKAFASTLEKDGIRTIGQLQTMEESDLIRRYGSMGQRLARLSKGIDDRDVHTN 277 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 P + + +F + I+ + + + + A +L+ + + +K++ F L Sbjct: 278 DPA-KSVSAETTFFDDISRREDLVPHLRKLSEKVAWRLKKQELAGHTVILKLKSADFKL- 335 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG-VAQLN 359 + + +L PTQ + I + L+ G +++ G+ + DF + Sbjct: 336 -----RTRNRRLDDPTQLADRIFRTGLQMLEKEAD-GTKFRLIGIGISDFADPSLADPPD 389 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 L D +A R MD L K G+G + Sbjct: 390 LVDPDAARRAKA--EAAMDQLRMKFGKGMVETG 420 >UniRef50_A8RF31 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RF31_9FIRM Length = 413 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 84/416 (20%), Positives = 158/416 (37%), Gaps = 24/416 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND---GCVIARNAEAKALGVKMGDPWFK 57 + D+N YA E + P L + V + G ++A+N +AK GVK G+ + Sbjct: 4 VILHSDINHCYAQIEEMKFPQLREVCMAVGGSERSRHGIILAKNDKAKECGVKTGESLRE 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDL 116 + + NYE Y S +V + S +VE + +DEA+ D++ Sbjct: 64 AFVKCPQ--LCIIPPNYEEYVYYSEKVKEIYQAYSDKVESFGLDEAWIDVSESTKLFGSG 121 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + EI+ V L+V +GI+ K AK+ + K + R ++ Sbjct: 122 YEIATEIQKRVKDELGLSVSIGISYNKVFAKMGSDMKKNMG------LVEITRTNFRDML 175 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LP++ ++ +G+ +KKL I T+ +LA ++++HF + E G+ + Sbjct: 176 WPLPIEHLFYVGKATAKKLRQYSIVTIGELAQLPRVWLKEHFGKMGELVWWFANGQDISE 235 Query: 237 L--EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + I + + + + A A +LR + IS ++ Sbjct: 236 VAFHNQKEEVKSIGNGITTPRDLCTFEEAKIVFYVLAESVASRLREQGLQGNVISISLR- 294 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-Q 353 N+ + K+ T + +I+ L + + V + + Sbjct: 295 -----NKYLESITRQCKIDKATNLASEIMEHILLLLKENYDFHIPLRSVAVSISGIQYME 349 Query: 354 GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQ---QWQMKRAM 406 QLNLF D ++L V+D + K G + I Q +Q +R Sbjct: 350 CYRQLNLFVDEKNYQKQQRLEQVVDDIRKKYGFKKIQRCCMLIDQGLSDFQPQRDH 405 >UniRef50_Q04M21 DNA polymerase IV n=98 Tax=Bacilli RepID=DPO4_STRP2 Length = 353 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 146/355 (41%), Gaps = 21/355 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-----NNDGCVIARNAEAKALGVKMGDPWF 56 D++AF+A+ E P L GKPV++ S G V + EA+A GV Sbjct: 14 IIHIDMDAFFAAVEIKDNPKLRGKPVIIGSDPRQTGGRGVVSTCSYEARAFGVHSAMSSK 73 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRD 115 + + + V S NYE Y + ++ + + + +E SIDEA+ D+T + Sbjct: 74 EAYERCPQA--VFISGNYEKYKAVGLQIRAIFKRYTDLIEPMSIDEAYLDVTENKLGIKS 131 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 R I+ + Q HLT GI+ K LAK+A+ K + + E+ Sbjct: 132 AVKIARLIQKDIWQELHLTASAGISYNKFLAKMASDYQKPHG------LTVILPEQAEDF 185 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + + + G+G++ ++L MG+ T DL + + F + R+ RG Sbjct: 186 LKQMDISKFHGVGKKTVERLHQMGVFTGADLLEVPEVTLIDRFGRLGYDLYRKARGIHNS 245 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ ++ I +++G+ + +++ + + + A L + + + + I+ Sbjct: 246 PVKSNR-IRKSIGKEKTYGKILRAEEDIKKELTLLSEKVALNLHQQEKAGKIVILKIRYE 304 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 F+ + + TQD+ I A + + + + + G+ + F Sbjct: 305 DFS------TLTKRKSIAQKTQDASQISQIALQLYEELSEKERGVRLLGITMTGF 353 >UniRef50_UPI0001982DE6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001982DE6 Length = 1137 Score = 364 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 134/369 (36%), Gaps = 23/369 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND----GCVIARNAEAKALGVKMGDPWF 56 + D++ F+ S P+L KPV V +N+ + + N A+ GVK G Sbjct: 396 VIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVR 455 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL 116 K L +V F N+E Y +++++ + L + +V+ S DEAF ++ + D Sbjct: 456 DAKALCPH--LVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSKE-GDP 512 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 IR + + T T GIA +A+LA +AK + +++ + Sbjct: 513 ELLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCY------IPVDKVDDYL 566 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCL 235 LP+ + GIG + +KL + T L +++ F + RG Sbjct: 567 HQLPIKALPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNR 626 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT- 294 + + I ++G R D R + + +L+ R + +K Sbjct: 627 VVG-VIQESKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKR 685 Query: 295 -------SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVML 347 + + S S+ + T D I AT+ + G+ + Sbjct: 686 RKDAGEPAKYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQV 745 Query: 348 GDFFSQGVA 356 + A Sbjct: 746 SRLENADTA 754 >UniRef50_B0MAH2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAH2_9FIRM Length = 402 Score = 364 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 157/407 (38%), Gaps = 28/407 (6%) Query: 1 MFALCDVNAFYASCE-------TVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ Y S E DL P ++ + G V+A + AK G++ Sbjct: 7 VIFHIDVNSAYLSWEAVYGISVRKDEVDLREVPSIIGGDESKRRGIVLAASIPAKKKGIR 66 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 + + + ++ + +Y S + + SP +E +SIDEAF D+T Sbjct: 67 TAETVREALNKCP--DLIIRPPCHGMYDKFSKAFLKEALKFSPVLEKFSIDEAFLDMTET 124 Query: 111 R-NCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + + ++ + ++ TV +G+A K LAK+A+ K + V L Sbjct: 125 VGQYKSPYEAACLLKDRIYEKLGFTVNIGVAPNKLLAKMASDFEKPNK-----VHTLFRE 179 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRE 228 E K M LPV+++ +G KKL +GI+T+ +LA + ++ H + Sbjct: 180 EVPNK-MWPLPVENLLFVGPATKKKLHNLGIRTIGELAHINPELLKSHIGNKHGIQIYEY 238 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G +E + S + I + S A A +LR++ I Sbjct: 239 ANGIDRAPVEAQQADSKGYGNSITLPSDIDSLEEADTVVLSLAETVASRLRADRVKASCI 298 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + IK F +S KL PT + +I+ AA ++ G + GV Sbjct: 299 TVEIKDCQFR------RSSHQKKLFAPTDITNEIVQAAKELYREKFR-GTSVRLIGVRAS 351 Query: 349 DFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 D + AQ++ D + L +D + K G+ + A Sbjct: 352 DITKEEFAQMDFLSD-KKKEKLRMLDQSIDAIRIKYGKDAVQRARFL 397 >UniRef50_B9YDA2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDA2_9FIRM Length = 469 Score = 363 bits (933), Expect = 6e-99, Method: Composition-based stats. Identities = 91/405 (22%), Positives = 169/405 (41%), Gaps = 21/405 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFKQ 58 D+N YA E + P+L +P+ V + G ++A+N AK ++ G+ + Sbjct: 52 IVHSDINHCYAQIEEMLNPELKQRPMAVGGSQEERHGIILAKNLHAKKYKIQTGETLDEA 111 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL-T 117 + + ++ +Y Y ++++V + E + RVE Y +DEA+ DLT + + Sbjct: 112 RIKCPQ--LLILPPDYRRYQRITDQVKAIYREYTDRVEEYGLDEAWLDLTQSQRLFGPAS 169 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 R I+ V LT+ +G++ K AK+A+ K ++ + Sbjct: 170 QIARTIQQRVYAELGLTISIGLSFNKIFAKMASDFVKPSG------FVTITRANFQEKIY 223 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L V +++ +G KKL+A GI T+ DLA D +F+R++F V E GE ++ Sbjct: 224 PLSVRELFYVGAATQKKLEAWGITTIGDLASRDRQFMRRYFGKVGEMLHWFALGEDISEV 283 Query: 238 EEFAP--TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + + + S + + + R + A A +LR + + I+ ++ Sbjct: 284 ALASEAIPVKSVGNSVTAVHDLHTHGEARLVLRVLAESVASRLRDQGLKGKGIALSLR-- 341 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF-SQG 354 + + S K PTQ + +I+ A L WQ + G+ + D Q Sbjct: 342 ----DIHLFRWSLQRKRARPTQLAEEILEDAEILLRQAWQNALPLRSIGISVFDLCLDQT 397 Query: 355 VAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 QL+LF D R QL +D + + G + + + Sbjct: 398 GEQLDLFVDEQHRQSLLQLEKTVDGIRRRFGFEKIQRCSLLLDKP 442 >UniRef50_C5CA41 DNA polymerase IV involved in DNA repair n=3 Tax=Micrococcus luteus NCTC 2665 RepID=C5CA41_MICLC Length = 431 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 92/408 (22%), Positives = 156/408 (38%), Gaps = 29/408 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-SNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+ S E +PDL G+P V + V++ + A+A GV+ P + Sbjct: 15 ILHVDMDAFFLSVELREQPDLEGRPAAVAAPSGRSVVLSASYAARAYGVRSAMPLAHARA 74 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDF 119 L +V +LY +S VM+ L +++P +E S+DEAF D+ G R Sbjct: 75 LCP--PLVVIPPRQQLYRAVSAEVMAVLADVTPVMEQLSVDEAFLDVAGARRRLGPPEHI 132 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G IR V L VG + K +AK A+ AAK + + +R + L Sbjct: 133 GHLIRERVRSALGLPCTVGGSAVKFVAKTASTAAKPDG------LLIVPPQRTLDFLHPL 186 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G + +++L G+ T+ DLA D + F RG + Sbjct: 187 PVGRLWGVGPKAAERLARRGVATIGDLARVDPARLEASFGAAGREWASLARGIDPRPVAP 246 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + I +F D + + R A +LR+E ++ +K ++ Sbjct: 247 RPAAR-SIGADHTFDVDPVDVVGVDPEVLRLCHRVAARLRAEQVTAGAVTVRLKAPDGSV 305 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW-QAGHRYQKAGVMLGDF---FSQGV 355 S + +L PT D++ A R + + + H + GV Q Sbjct: 306 ------RSRTARLARPTATGHDLLGPARRLVRELHAERPHPVRLVGVRAERLGDEADQPP 359 Query: 356 AQLNLF--------DDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 AQ LF + + +D + + + A Sbjct: 360 AQEALFGGPAWGTEGEASEAGDWAGAEAALDAVARRFPTAAVRPASLL 407 >UniRef50_Q72MY7 DNA polymerase IV n=18 Tax=Bacteria RepID=DPO4_LEPIC Length = 364 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 155/370 (41%), Gaps = 26/370 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++AFYAS E P+ GKP++V N+ V A + EA+ GV+ P K Sbjct: 8 IIHVDMDAFYASVEQRDFPEYKGKPLIVGGPPNSRSVVSAASYEARKFGVRSAMPCSKAA 67 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTD 118 L + + +E+Y ++S ++ E + VE+ S+DE + D+T +N Sbjct: 68 QLAPQA--IFVFPRFEVYKEVSKQIREIFLEYTDLVEMLSLDEGYLDVTFNKKNIPFAVT 125 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +EIR + +RT LT G+ +K ++KLA+ K + + + + Sbjct: 126 IAKEIRTEIFKRTELTASAGVGNSKFISKLASEKNKPNG------LTVVLPDDVISFIDP 179 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV G+G+ ++K+ +GI T DL I + +HF + + RGE ++ Sbjct: 180 LPVSSFHGVGKVTARKMKELGIYTGKDLRTKSIDELVQHFGKMGIYYYKISRGEDERMVQ 239 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 ++ + +F DY + + + A +L + + ++ IK F+ Sbjct: 240 SSR-ERKSLGAESTFDRDKLDYDDLLKQLKDVAVVVERRLEKKDFAGKTLTLKIKFYDFS 298 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-------RYQKAGVMLGDFF 351 L + S L P + ++ + A + ++ + + G+ L Sbjct: 299 LK------TRSKTLSEPIFKADELYSTAIELFEEFFEIKYGKKSAIKAIRLLGISLSHPN 352 Query: 352 SQGVAQLNLF 361 S+ NLF Sbjct: 353 SENED-PNLF 361 >UniRef50_B0BPX9 DNA polymerase IV n=222 Tax=cellular organisms RepID=DPO4_ACTPJ Length = 356 Score = 363 bits (932), Expect = 9e-99, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 138/371 (37%), Gaps = 31/371 (8%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P L GKPV V + G + N EA+ G+ P + Sbjct: 7 IIHIDMDCFYAAIEMRENPALIGKPVAVGGSVEGRGVLTTCNYEARKFGLHSAMPTAQAL 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 ++ N LY +S ++ + VE S+DEA+ D+T R C T Sbjct: 67 KRCP--NLILVPVNMPLYKAVSEQIHQIFRRYTDIVEPLSLDEAYLDVTDCRQCSGSATW 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 +EIR + HLT GIA K LAK+ + K + + + E + Sbjct: 125 IAQEIRDAIWNELHLTASAGIAPLKFLAKIVSDQNKPNGQF------VISPENMTAFIYD 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ + G+G+ ++KL +G+ T D+ +D FI K F +R ++E Sbjct: 179 LPLKKIPGVGKVTNEKLAQLGLHTCGDIQHSDKAFIYKTFGKFGQRLWEFSHAIDNRKIE 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSE-----HQYCRFISTFIK 293 P ++ + + I Q + + +L+ Q + ++ +K Sbjct: 239 ANRP-RKSLAVENTLPTDIWHLAEAEQIVDELFKKLVFRLQRNWGERSLQEFKKLAIKLK 297 Query: 294 TSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA--GHRYQKAGVMLGDFF 351 F L T L +WQ + G+ + Sbjct: 298 FGDFT----------QTTLERTTDGLS--RERFIELLQQVWQRTNRRSVRLIGLSVHYPT 345 Query: 352 SQGVAQLNLFD 362 + QLNL++ Sbjct: 346 EKVKKQLNLWE 356 >UniRef50_D1C5S0 DNA-directed DNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5S0_SPHTD Length = 394 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 161/382 (42%), Gaps = 21/382 (5%) Query: 15 ETVFRPDLWGKPVVVLSNNDGCV--IARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSS 72 E + RP+L GKPV+V G A + EA+A GV+ P + L V Sbjct: 24 EILRRPELRGKPVIVGGRPGGRGVVAAASYEARAYGVRSAMPIAQAVRLCPHG--VFLPG 81 Query: 73 NYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRN-CRDLTDFGREIRATVLQRT 131 ++ Y ++S R + LE SP VE+ S+DEA+ DL+ + R I+ V + Sbjct: 82 DHAYYRELSGRFRAILERFSPLVEMVSVDEAYLDLSHSERSVGPPLEAARAIKRQVREEL 141 Query: 132 HLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRI 191 LTV +G+A ++ +AK+A+ K + L + ++ LPV+ + GIG + Sbjct: 142 GLTVSLGVATSRLVAKIASDLDKPDG------LRLIEPGAEAVTLAPLPVERMPGIGPKS 195 Query: 192 SKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSR 251 ++L +G+ T+ LA +R F + + RG + + I R Sbjct: 196 VERLQRIGVTTLGGLARMPAAALRPIFGRRADEVIARARGIDPRPVNPEREPAKSIGRER 255 Query: 252 SFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVK 311 +FG+ +TD + +A+ A R LR E R ++ ++ S F + Sbjct: 256 TFGQDLTDRHEIERALYHLAERTGRDLRREGLQGRVVAVKLRYSDFE------TVGRQRR 309 Query: 312 LLTPTQDSRDIINAATRSLDAIWQAGH-RYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGS 370 L PT D ++I A + + + + GV + QL +F D Sbjct: 310 LPRPTDDHQEIAEVAMDLVARLLEERQAPVRLLGVRVAGLGPA-AIQLTMFGD--DPLRR 366 Query: 371 EQLMTVMDTLNAKEGRGTLYFA 392 +L +D L A+ G + A Sbjct: 367 HRLNHALDDLAARYHAGLVIPA 388 >UniRef50_C7H0B0 Putative DNA polymerase IV n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0B0_9FIRM Length = 406 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 169/403 (41%), Gaps = 24/403 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + CD+N+++ S E + P+L PV V N G ++A+N AK G+K G+ + Sbjct: 6 VILHCDMNSYFVSVELLKHPELKDLPVAVAGNPKNRHGIILAKNEIAKKYGIKTGETIWA 65 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL- 116 K+ + + S +Y+ Y S R+E +S+DE++ D+TG Sbjct: 66 AKNKCKDLEL--LSPHYDEYIKYHKLFNDIFYRYSDRIEKFSVDESWIDVTGSIKLFGTG 123 Query: 117 TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLM 176 + +IR V + +T+ G++ K AK+ + K + + + ++++ Sbjct: 124 KEIADKIRGEVREELGITLSAGVSFNKVFAKMGSEYKKPDA------TTVISRDNYKEVL 177 Query: 177 SALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQ 236 LPV + + +G+ +K L++ GI T+ DLA + + ++ V + + G+ + Sbjct: 178 WPLPVSEFFMVGKITAKLLNSYGIYTIKDLAAAEPQILKAELGVKIYELIDSANGKSSDE 237 Query: 237 LEEFA--PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 ++ + I ++F E + +++ + + A++LRS + + + IK Sbjct: 238 VKYYKDNEDPMSIGHGKTFKEDLVTSTQVKKEVWGLSEMVAKRLRSHNLFAAGVKVVIKD 297 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG 354 S F S KL PT + I A + A W + + + D Sbjct: 298 SDFK------SYSRQKKLRLPTDVTGHIAEEAFSLIKASWDFSKKLRAMSITGIDLRPDC 351 Query: 355 ---VAQLNLFDDNAPR-PGSEQLMTVMDTLNAKEGRGTLYFAG 393 +Q ++F ++ VMD + K G ++ + Sbjct: 352 KDIGSQYSIFSQGEQEGIKEREVDKVMDEIKQKFGDQSIGYGV 394 >UniRef50_A7I5X9 DNA-directed DNA polymerase n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I5X9_METB6 Length = 365 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 87/367 (23%), Positives = 150/367 (40%), Gaps = 21/367 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPW 55 + D++ FYA+ E P++ GK VVV G V + EA+A GV+ P Sbjct: 12 IVLHADMDCFYAAVEMHDHPEIAGKAVVVGADPQGGAGRGVVSTASYEARAFGVRSAMPI 71 Query: 56 FKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD 115 + L G V + YA +S +M +E RV+ SIDEAF D++ VR+ Sbjct: 72 SQAYRLCP--GAVYLRPDMARYAAVSAEIMGIFKETGYRVQQVSIDEAFLDISPVRSFDT 129 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 D ++ T+ R +T +G+A +K +AK+A+ K + + R Sbjct: 130 ARDLAVRLKQTIRDRVGITCSLGVAPSKIVAKIASGHQKPDGM------TVVTPDSARDF 183 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 ++ LP+ + GIG + +++A+GI T+ +LA DI+ + F G Sbjct: 184 LAPLPIRKIPGIGGKTGAQIEALGITTIGNLATCDIQVLVGAFGRSAGLLREAALGHDNS 243 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ E + I +F D + + A+ + E + ++ ++ + Sbjct: 244 EVVERDGV-KSISKETTFANDTEDPKEIAATMELLVREVAQAIADEALQFKTVTIRVRYA 302 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 F + + LL D I AA L +W G ++ G+ L Q Sbjct: 303 GF------VSKTKARSLLHYHNDEAAIRAAAGELLRELWD-GKPIRRLGLRLSTLRHQDS 355 Query: 356 AQLNLFD 362 Q LF Sbjct: 356 RQQTLFG 362 >UniRef50_Q9AK82 DNA polymerase IV n=34 Tax=Bacteria RepID=DPO4_STRCO Length = 479 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 149/379 (39%), Gaps = 23/379 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E +P L GK VVV G V + EA+ GV P + + Sbjct: 7 ILHLDMDAFFASVEQASKPSLRGKAVVVGGLGPRGVVATCSYEARVFGVHSAMPMGQARR 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF- 119 L + +ELY +S +VM L ELSP VE S+DEAF DL RD Sbjct: 67 LAPHAAYLV--PRFELYRSISEQVMRLLRELSPLVEPLSLDEAFVDLDAGGAARDAETAR 124 Query: 120 --GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 G ++R + T LT VG+A +K LAK+A+ AAK + L +R ++ Sbjct: 125 LAGTKLRTDIRTVTGLTGSVGLAASKMLAKIASEAAKPDG------LVLIPPGTERAMLE 178 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNV-VLERTVRELRGEPCLQ 236 + V + G+G L GI TV ++A+ + + Sbjct: 179 PMTVRTLPGVGPATGDHLRRAGITTVGEIAEAGEDELVRLLGKAHGHALYAMALARDERP 238 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + T + + ++ I D + + A R +LR+ R I ++ Sbjct: 239 VVAERET-KSVSVEDTYDVDIHDRVRVGVEVGRLADRCVRRLRASGLSGRTIVLKVRRYD 297 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 F+ + S L PT D + AA R LD++ G + GV + Sbjct: 298 FS------TLTRSETLRGPTDDPAVVREAAARLLDSVDTTG-GVRLLGVGVSGL--ADYT 348 Query: 357 QLNLFDDNAPRPGSEQLMT 375 Q +LF A E Sbjct: 349 QEDLFAQAAGDRAEEPAEE 367 >UniRef50_Q0KKM4 Putative UV protection protein n=1 Tax=Plasmid pLB1 RepID=Q0KKM4_9ZZZZ Length = 420 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 162/419 (38%), Positives = 233/419 (55%), Gaps = 5/419 (1%) Query: 5 CDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRR 64 DV FY S E +F P L G PV+VLSNNDGC +AR+ EAKAL V+MG+P FK +D R Sbjct: 6 VDVQNFYVSAERLFDPSLRGVPVLVLSNNDGCAVARSEEAKALHVRMGEPVFKIRDRIER 65 Query: 65 CGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIR 124 G+ SSNYELY+D++ R + + + S VEIYSIDE+F + + + ++R Sbjct: 66 HGMRLRSSNYELYSDLNRRFNAVIADHSDTVEIYSIDESFYRAPTLPSGLGDVEAAHKLR 125 Query: 125 ATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDV 184 +L++ L +G+ T+TL+K+AN AK ++ GGVVDL + E +R+L PV +V Sbjct: 126 EDILRQVGLPTRIGLGPTRTLSKVANALAKATEKVWGGVVDLHDTELRRRLFEKWPVGEV 185 Query: 185 WGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTK 244 WGIG + +L +GI+T DLA R +VVLER VREL G C+ + Sbjct: 186 WGIGGALEARLRPLGIRTTADLAAMPPAVARDVGSVVLERLVRELNGIECVDFKLEPDAL 245 Query: 245 QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYY 304 + +R FGE + +R+A+ AARAAEK+R++ + F S + N P Sbjct: 246 KNTAVTRQFGEPVKTLEELREAMARRAARAAEKIRAQGLVASRLIAFAHGSRYRPNPP-- 303 Query: 305 GNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDN 364 S S +L PT D R I+ + +A++Q G Y K GV+L D QG Q +LF Sbjct: 304 SASRSARLSPPTNDPRIILRIVGQMTEAMFQPGGVYTKCGVLLEDLTPQGHGQADLF--A 361 Query: 365 APRPGSEQLMTVMDTLNAKEGRGTLYFAGQGI-QQQWQMKRAMLSPRYTTRSSDLLRVK 422 P + L+ MD LN++ GR T+ A QG + + KR+ SP +TTR D+ + Sbjct: 362 VADPRAPALLAAMDGLNSRFGRNTIMLAAQGHGPKAFDTKRSQKSPAWTTRIKDIPIAR 420 >UniRef50_C4GAM5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAM5_9FIRM Length = 425 Score = 360 bits (924), Expect = 6e-98, Method: Composition-based stats. Identities = 100/424 (23%), Positives = 168/424 (39%), Gaps = 30/424 (7%) Query: 1 MFALCDVNAFYASCETVFR-------PDLWGKPVVVLSN---NDGCVIARNAEAKALGVK 50 + DVN+ + S R DL P + + G + A++ AK G+ Sbjct: 5 IIFHVDVNSAFLSWTASDRMAKGIDKVDLRDLPSAIGGDPKTRHGIITAKSIPAKRYGIV 64 Query: 51 MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV 110 G+P + ++ +Y LYA S +M L + +P V+ +SIDEAFCD+TG Sbjct: 65 TGEPVSQALRKCPS--LILVPGDYSLYARQSQALMDLLRKYAPAVDPFSIDEAFCDMTGT 122 Query: 111 RNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNL 169 + D F +++ + + TV VGI+ LAK+A+ K + V L Sbjct: 123 ASLYGDPVLFAHKLKDEIRRDLGFTVNVGISSNHLLAKMASDFTKPDR-----VHTLWPR 177 Query: 170 ERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVREL 229 E RK M LP D+ +G ++KL ++GI T+ DLA T + HF + + Sbjct: 178 EIPRK-MWPLPAADLLFVGESTAQKLKSLGILTIGDLAGTPEDLLVSHFGKHGSQMLAYA 236 Query: 230 RGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIS 289 G L + + + D R + S A ++R + R + Sbjct: 237 NGTEPSDLTSRHRKSRGFSNEITISHDLVDREEARLILLSLCETLAARIRLQGDKIRLVG 296 Query: 290 TFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGD 349 + K S F S +L + ++ I A L +W G + GV + Sbjct: 297 VYYKDSSF------VSASRQTRLNRSSSSTQTIYETALSLLHELWD-GRPLRLLGVRGSE 349 Query: 350 F-FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQW--QMKRAM 406 G Q++LFD +QL +D + K G ++ A + + +R+ Sbjct: 350 IDKDSGSYQMDLFDAG-KNRKLDQLDAAVDQIRDKFGDSSIRRAVFLGADETDLKKRRSN 408 Query: 407 LSPR 410 S + Sbjct: 409 RSRK 412 >UniRef50_C2FXW7 Possible DNA-directed DNA polymerase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FXW7_9SPHI Length = 393 Score = 360 bits (924), Expect = 8e-98, Method: Composition-based stats. Identities = 78/403 (19%), Positives = 155/403 (38%), Gaps = 21/403 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 A D++ F+ S E + GKP++V ++ V A + E + GV P Sbjct: 10 VAHLDLDTFFVSVERLKNTQFVGKPLIVGGMSDRAVVSACSYETRLYGVHSAMPMKLALR 69 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + + + Y+ S V + E P +E SIDE + DLTGV + F Sbjct: 70 LCPQA--IVIRGDMDSYSYYSRMVTDVVREYVPVMEKASIDEFYADLTGVDRFFGCSQFM 127 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 E++ V + L + +A K ++K+A AK ++ ++ ++ L Sbjct: 128 AELKQKVRKEVGLPISYALASNKLISKVATEDAKPDGKRE------VEHGLEKDYLAPLR 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 ++ + GIG + S L MG++T+ L++ + ++ R+ G + + Sbjct: 182 IERMPGIGNKTSGLLHQMGVRTIKVLSEIPVPMMQNLLGKNGVDLSRKANGIDFTPIVPY 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + I +F + D ++ + R +LR + I+ ++ S F Sbjct: 242 SEQ-KSIGTEETFEQDTIDIYYLKSELIRMTERMTFQLRQHRRLTGCITIKLRYSNFD-- 298 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 S + + T +++ A ++ + GV QG Q++L Sbjct: 299 ----TVSKQMVIP-YTASDAVLLSKAKELFAKLYDKRLLVRLLGVRFSHLV-QGQYQIDL 352 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 F+D L MD + + G + A + + + Sbjct: 353 FEDTVESVR---LYQAMDYIRQRYGDAVVKRAISVPKPPEKER 392 >UniRef50_A3VP13 DNA polymerase IV n=5 Tax=Alphaproteobacteria RepID=A3VP13_9PROT Length = 422 Score = 359 bits (923), Expect = 8e-98, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 150/394 (38%), Gaps = 23/394 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AF+A+ E P L KPV+V + G V A++ G+ P FK K L Sbjct: 35 IAHVDCDAFFAAIEKRDDPSLVDKPVLVGGGHRGVVSTCCYIARSYGIHSAMPMFKAKAL 94 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD--LTDF 119 + V Y + + ++ + L+P ++ SIDEA+ DL G Sbjct: 95 CPQA--VIVPPRGAAYREAAAQIRDLMAPLTPLIQPVSIDEAYLDLGGTERLHGAIPAQL 152 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 ++ V + +T+ +G++ K LAK+A+ K L ++ Sbjct: 153 LAKLAKDVETQIGITLSIGLSVNKLLAKIASDFDKPRG------FTLIGGTEAANFLAPY 206 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P + GIG R S+KL G +T+ DL R + + GE + Sbjct: 207 PPGLLPGIGTRFSEKLMRDGFRTLGDLQHCSTRELVDRYGEHGLTLRARACGEDPRPV-T 265 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + + +F I D ++ + + A + + + + + R ++ +KT+ F Sbjct: 266 VDRETKSVSGETTFRADIGDAAALEDHLYAMARKVSSRAKEKGLAGRVVTLKLKTARFR- 324 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH---RYQKAGVMLGDFFSQGV- 355 + L + +R I + A L A Q G Y+ G + D V Sbjct: 325 -----TFTRRQTLPHASNLTRVIFDCARAMLTAELQKGRTPVTYRLIGAGISDLVPAEVM 379 Query: 356 AQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTL 389 LF + + +D LNA+ G ++ Sbjct: 380 HDGYLF--AEDLEKTGRREDAIDKLNARFGEDSI 411 >UniRef50_Q4ZWM4 DNA polymerase IV n=61 Tax=Bacteria RepID=DPO4_PSEU2 Length = 354 Score = 359 bits (923), Expect = 9e-98, Method: Composition-based stats. Identities = 76/368 (20%), Positives = 136/368 (36%), Gaps = 28/368 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D + FYA+ E PDL GKP+ V + G + N EA+A GV+ Sbjct: 6 IIHIDCDCFYAAIEMRDEPDLAGKPLAVGGSAERRGVIATCNYEARAYGVRSAMSSRHAL 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L + + Y + S + + + + +E S+DEAF D++ + T Sbjct: 66 KLCP--DLTIVKPRMDAYKEASREIHTIFRDYTDLIEPLSLDEAFLDVSEAGHFSGSATR 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++IR V + H+TV G+A K LAK+A+ K + + ++ + +++ Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNG------LFVITPDQVEEFVAS 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G+ + KL +GI DL + + F ER G ++ Sbjct: 178 LPVTKLHGVGKVTADKLGRLGIVDCADLRSRSKLALVREFGSFGERLWSLAHGIDDRPVQ 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSE--HQYCRFISTFIKTSP 296 +Q + ++ + D + + + + ++ +K Sbjct: 238 -NDSRRQSVSVENTYDTDLPDLAACLEKLPDLLETLSGRMARMEGQYRPGKPFVKVKFHD 296 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQK--AGVMLGDFFSQG 354 F L + RD+ + A + G + GV L D Sbjct: 297 FT----------QTTLEQ-SGAGRDLGSYEQLLAQAFARGGKPVRLLGIGVRLHDLR-AA 344 Query: 355 VAQLNLFD 362 QL LF Sbjct: 345 HEQLELFS 352 >UniRef50_C8WGA6 DNA-directed DNA polymerase n=3 Tax=Bacteria RepID=C8WGA6_EGGLE Length = 448 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 91/415 (21%), Positives = 153/415 (36%), Gaps = 31/415 (7%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSN---NDGCVIARNAEAKALGVKMGDPWFK 57 + D+NAFYAS E RP+L G P+VV + G V+A++A+AKA GVK G+ ++ Sbjct: 29 VIFHSDMNAFYASVEQAERPELRGVPLVVGGHEELRHGIVLAKSAQAKAAGVKTGEALWE 88 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RD 115 + G+V YE+Y S + + VE + +DEA+ DLTG D Sbjct: 89 ARAKCP--GLVVVPPRYEVYQAYSAMARRIYYQYTDLVEPFGLDEAWLDLTGSLPLLGGD 146 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 EI + TV VG++ K AK + K + + R Sbjct: 147 PARTAAEISGRIKAELGCTVSVGVSWNKIFAKFGSDFRKPDA------ITFITPQNYRCR 200 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + PV ++ +G KL + GI + +LA +R+ + RGE Sbjct: 201 VWEAPVSELLYVGAATRAKLHSSGIDRIGELACASPELLRRRLGKIGLVLRAFARGEDAT 260 Query: 236 QLEEFAPTK-------QEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 ++ + + + + I + + + A++LR + Sbjct: 261 PVKPYDQARNEVDRTVKSFGNGLTAPHDIVSASDAKALVYLLSESVAQRLREARFRASTV 320 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG--HRYQKAGVM 346 S ++++ S L T + + A L A H + V Sbjct: 321 SIGVRSAR-----DLASYSRQTTLRRATNVTGVVARTAWGLLAANEPLDGEHPLRGLHVR 375 Query: 347 LGDFFS-QGVAQLNL-FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQ 399 + QL L FD A R E L +D L + G + + + + Sbjct: 376 ASNLEPCDAPQQLELAFD--ARRRMLEDLDETIDDLRRRFGNTCIQRGAELLDES 428 >UniRef50_C7RGQ0 DNA-directed DNA polymerase n=5 Tax=Anaerococcus RepID=C7RGQ0_ANAPD Length = 345 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 80/362 (22%), Positives = 158/362 (43%), Gaps = 21/362 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D +AFYASCE + P + P+ V +N + N +A+ G+ P F K+ Sbjct: 4 IFHVDCDAFYASCEELRNPKMKNHPLAVGGLSNKSILTTANYKAREFGLHSAMPVFIAKE 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L ++ +++ Y S V S ++E + +E S+DEA+ + Sbjct: 64 LCP--NLILLPVDHKYYRKKSKEVFSLVKEYAKLMEQVSVDEAYL----LVETDSPKKLA 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+++ VL++T + + +GI+ K LAKLA+ K E + + Sbjct: 118 RKLQEEVLRKTGIGISIGISYNKFLAKLASDWQKPHGITQ------IRKEDLDYFLPNIS 171 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ V GIG++ S++L+ +GI V DL D ++ +F +RG ++ Sbjct: 172 VNKVHGIGKKTSERLNKIGIYKVEDLLKLDYEYLIDNFGKQGAYIYHVIRGVDDRKINPS 231 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++ I R+F + D + + + + +++ ++ + ++ IK + F Sbjct: 232 R-VRKSIGKERTFAQNTNDMAILTSYLKNLSELIEDEMDIKNIQGKTVNLKIKDAKFK-- 288 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 ++ S+ L P ++DI N A L+ + + G + G+ L + + + QL+ Sbjct: 289 ----NHTRSITLQEPIYRAKDIYNEALSLLEDLHK-GEMLRLIGISLSNLQERKLNQLSF 343 Query: 361 FD 362 D Sbjct: 344 LD 345 >UniRef50_Q654Y6 Os06g0691000 protein n=7 Tax=Poaceae RepID=Q654Y6_ORYSJ Length = 1125 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 70/418 (16%), Positives = 148/418 (35%), Gaps = 38/418 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN----NDGCVIARNAEAKALGVKMGDPWFK 57 D++ F+ S +P+L KPV V + + + N A+ G+K G + Sbjct: 379 IIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVRE 438 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K ++ +++ Y +++++ L + +V+ S DEAF D+T + + Sbjct: 439 AKARCPH--LMIVPYDFDAYGEVADQFYGILHKYCSKVQALSCDEAFLDMTECLHD-NPE 495 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 + ++IR + T + GI+ +A+LA +AK + + E+ ++ Sbjct: 496 EVTQKIRNEIFGTTKCSASAGISGNMLIARLATRSAKPNGQCF------ISSEKVDGYLN 549 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQ 236 L + + GIG +S KL + ++ L + + K F + RG Sbjct: 550 TLSIKALPGIGHTVSDKLKSKEVEYCGQLRNIPKESLHKDFGKKIGDMLWNYCRGIDHSV 609 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS- 295 +E T + + ++G R D + + + +L R I+ +KT Sbjct: 610 VEAVQET-KSVGAEVNWGVRFNDNKDAENFLVNLSKEVCLRLEGCGVQGRTITLKLKTRR 668 Query: 296 -------PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 F S S+ + T + + A + + + G+ + Sbjct: 669 KGAGEPIKFMGCGDCETVSRSMTIAGATDNPVTLQRIAKQLFSSFCVDVKEVRGVGLKIS 728 Query: 349 DFFSQGVA----QLNLFD----DNAPRPGSEQLMTVMDTLNA-------KEGRGTLYF 391 +A Q N+ + + + N + G G++ Sbjct: 729 RLEHADLARGAPQGNMLESWLASPSDKLKKHSTEKACLLKNRDDAATSERRGFGSIRP 786 >UniRef50_Q0EYF1 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYF1_9PROT Length = 410 Score = 357 bits (916), Expect = 5e-97, Method: Composition-based stats. Identities = 107/393 (27%), Positives = 176/393 (44%), Gaps = 16/393 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYASCE P L G+P+ VLSN++ VIA++ +A+ALG++ G P ++ + + Sbjct: 10 IAHVDCDAFYASCEAARHPKLRGRPICVLSNHNAMVIAKSYDARALGIRTGTPVWEARRM 69 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC--RDLTDF 119 + ++ Y +S ++ S L SP VE+YSIDE F D G+R + + Sbjct: 70 APHAA--FLTPDFRYYGQISQQMFSILRRYSPVVEVYSIDEGFIDFNGIRQLWKKTYREL 127 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIR V +TV VG++ ++TLAK+A+ K V + ++ ++ L Sbjct: 128 ADEIRHAVWHELGITVSVGVSVSRTLAKMASEHHKPNG------VTVVPVQAIATFLAEL 181 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 V ++ GIGR + L I+T L A D R +++ + EL G L LE Sbjct: 182 GVGEIPGIGRSRAALLCRKDIRTALQFARADERLLQRLIGRHGQMLRHELNGRAILTLEC 241 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 P + + + S G + + +A R L ++ + F+ F Sbjct: 242 EPPLPKSMAKTASMGRISEKRRVIAAYLGYHALRLVADLVAKQLLVSRLYLFLTLESFEC 301 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLN 359 G L PT + I A +L ++ G RY+ GV+ + AQ + Sbjct: 302 RGLEVG------LDLPTNSLKRINGAVHHALGRLFIEGERYRGCGVVATQLQREAHAQPD 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA 392 LF +QLM ++ +N + G + A Sbjct: 356 LFGLMREDLRQQQLMQAVNAINRRFGEQAISTA 388 >UniRef50_A9NFA5 DNA-damage repair protein n=5 Tax=Bacteria RepID=A9NFA5_ACHLI Length = 448 Score = 357 bits (916), Expect = 6e-97, Method: Composition-based stats. Identities = 92/416 (22%), Positives = 154/416 (37%), Gaps = 22/416 (5%) Query: 2 FALCDVNAFYASCETVFRP-DLWGKPVVVLSNNDG---CVIARNAEAKALGVKMGDPWFK 57 D+ +FYAS E V R D + P+VV + G V+A + K+LGV F+ Sbjct: 37 ILCIDLKSFYASVECVLRGLDPFKTPLVVADKSRGGGSIVLAVSPYLKSLGVPSRCRIFE 96 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSP--RVEIYSIDEAFCDLTGVRNCRD 115 L ++ + Y + S V+ + + +YSIDEAF DLT Sbjct: 97 ---LPEDLNIIYAKPQMQTYLEYSASVIGVYLDFISEADLYVYSIDEAFLDLTSYLAYYK 153 Query: 116 LTDF--GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQR 173 TD EI T+ + LT GI ++KL+ K + + + + + Sbjct: 154 KTDIELAEEILNTITSKLGLTATCGIGPNMIMSKLSMDIEAK--KNPNNIAKWNYDDIKD 211 Query: 174 KLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEP 233 L P+ +WGIG R+ L+ +G+ T+ D+A+ +++ F V+ E G Sbjct: 212 HLWPVTPLSKMWGIGHRMESHLNKLGLFTIGDIANYPKEKLKRRFGVLGEELWYHTHGID 271 Query: 234 CLQLEEF---APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 ++++ + + + I +LR + + IS Sbjct: 272 LSEIKDKYKLRTKPKSFGSGQVLFRD-YSETEIMTIILEMVDDVTRRLRIAKKRAQTISL 330 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 I G S V L PT I D ++ G+ + GV L Sbjct: 331 SIGY----TKSVAGGFSRQVTLEQPTSSEATIYQTCQDLFD-MYYEGYPIRTVGVHLSKL 385 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAM 406 V Q +LF+D QL MD + K G+ ++ + +R Sbjct: 386 TDSKVYQYSLFEDAHQLEKEYQLHMTMDKIKHKFGKNSVIRLSSEQEHATAKQRNK 441 >UniRef50_Q2LU75 DNA polymerase IV n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU75_SYNAS Length = 362 Score = 357 bits (916), Expect = 7e-97, Method: Composition-based stats. Identities = 74/356 (20%), Positives = 137/356 (38%), Gaps = 22/356 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS----NNDGCVIARNAEAKALGVKMGDPWFK 57 D++AF+AS E +P+L GKPVV+ + G V N EA+ G+ P Sbjct: 16 ILHIDMDAFFASVEENRKPELKGKPVVIGGMGDPSKRGVVSTANYEARKYGISSAMPLRT 75 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 L R + +Y+ Y +S + L ++ +E IDEA+ D++ R+ Sbjct: 76 AYKLCPRA--IFLPVDYKAYLAVSRYFKAVLLNITTIMEDVGIDEAYLDISENRDTD--E 131 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 +I+ + ++T LT +GIA K LAK+A+ K + + + E + Sbjct: 132 KISEKIKTGIYEKTGLTCSIGIAPNKLLAKIASDMNKPDG------LTIFSGEDIENRLW 185 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVV-LERTVRELRGEPCLQ 236 LP+ ++GIG + + L A+ I T+ LA + F RG Sbjct: 186 PLPIRKLYGIGPKTEEHLKALNIATIGQLAALPPEVLVARFGPSYGHYLHEASRGIDESP 245 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + + + +F ++ ++ + + L + R + I+ S Sbjct: 246 IIT-SWEPKSFSREITFQVDEKNWQAIARTLAELTKEVVSDLAEKGYAARNVILKIRYSD 304 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS 352 F + + + +I A L + +G + + GV +G Sbjct: 305 FR------TVTRACSIDQAVGKEEEIRRMAFSCLKRVDLSGKKIRLVGVRVGRLEK 354 >UniRef50_B1KD33 DNA polymerase IV n=55 Tax=Proteobacteria RepID=DPO4_SHEWM Length = 364 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 66/376 (17%), Positives = 135/376 (35%), Gaps = 38/376 (10%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ ++A+ E P+L GKP+ V + G + N EA+A GV+ Sbjct: 8 IIHIDMDCYFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARAFGVRSAMASGYAL 67 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L ++ +Y ++S ++ + +E S+DEA+ D+T + C T Sbjct: 68 KLCP--DLILVPGRMSVYKEVSAQIRDIFARYTDLIEPLSLDEAYLDVTECKQCQGSATL 125 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 + IR + + T LT GIA K LAK+A+ K + + + ++ Sbjct: 126 IAQAIRQEIFEVTGLTASAGIAPVKFLAKVASDLNKPNGQY------VITPDMISSFITT 179 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ + G+G+ KKL+ +G+ T +L + + F + + +G + Sbjct: 180 LPLTKIPGVGKVTGKKLEDIGLTTCGELQAYPKSELIERFGKFGKILIERAQGIDERAIS 239 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS--EHQYCRFISTFIKTSP 296 ++ + + + I + ++ + + +K + Sbjct: 240 PHR-ERKSVGVETTLAKDIYTLEQCHGVMPQLIQELGARMSRSAKGRSINKQVVKLKFND 298 Query: 297 FALNEPYYGNSASVKLLTPTQ--DSRDIINAATRSLDAIWQAGHRYQKAGVML------- 347 F + + + +SL+ Q G + GV + Sbjct: 299 F----------KQTTIEHRSDEMSVKLFYELLAQSLER--QQGRGIRLLGVSVGLACQAD 346 Query: 348 GDFFSQGVA---QLNL 360 + QL+L Sbjct: 347 SNTAKDNQVRESQLDL 362 >UniRef50_Q6MCK0 Putative SOS mutagenesis and repair protein UmuC n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCK0_PARUW Length = 393 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 148/395 (37%), Positives = 220/395 (55%), Gaps = 5/395 (1%) Query: 27 VVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMS 86 +VVLSNNDGCVI+R+ EAK LGVKMG+P+F+ K L + FSSNY LY D+S R+M+ Sbjct: 1 MVVLSNNDGCVISRSQEAKLLGVKMGEPYFQIKALCEFRNIQVFSSNYALYGDISERIMN 60 Query: 87 TLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLA 146 L E +P ++IYSIDEAF DL E++ V + + + +G+A TKTLA Sbjct: 61 LLFEHAPDLDIYSIDEAFLKYPSSVAPSDLVSLCHELQKKVKKWVGMPISLGLANTKTLA 120 Query: 147 KLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDL 206 K+AN AKK Q V DL N ++K++ + DVWGIGR + +KL+ M I T + Sbjct: 121 KMANDLAKKIQNFY--VFDL-NSSVRQKVLQNYLIGDVWGIGRNLKEKLNGMNIHTAWEY 177 Query: 207 ADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQA 266 A D IRK V+ ER + ELRG CL+ +E K+ ++ SRSFG +++ + +A Sbjct: 178 AQMDPSIIRKRLGVIGERILWELRGVSCLESDEKVS-KKSLLYSRSFGHVLSEITPLSEA 236 Query: 267 ICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAA 326 + +Y AEKLR++ + + F++ + +S + PT+D+ ++I AA Sbjct: 237 LSTYVYTVAEKLRAQGSLAKALYIFLEYQIQPGKKMRCYDSITEIFPAPTKDTGEMIKAA 296 Query: 327 TRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGR 386 R L+ I++ RY+K GV+L D + + +LF N P QLM MD LNA+ G+ Sbjct: 297 KRGLNKIFRREERYKKCGVILLDLLPESSSNSDLF-LNPVDPKRTQLMNTMDALNARFGK 355 Query: 387 GTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDLLRV 421 L+F G W+ ++ S + L V Sbjct: 356 KKLFFGAMGTDVSWKSRKDCSSKHNPSNWQQLPIV 390 >UniRef50_B9HS71 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS71_POPTR Length = 1191 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 69/367 (18%), Positives = 130/367 (35%), Gaps = 23/367 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN----NDGCVIARNAEAKALGVKMGDPWFK 57 D++ F+ S P+L KPV V + + + N A+ GVK G Sbjct: 441 IIHVDMDCFFVSVVIRNHPELHDKPVAVCHSDNPKGTAEISSANYPARNYGVKAGIFVRD 500 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 K L + +V F N++ Y ++++++ + L + +V+ S DEAF D+T ++ D Sbjct: 501 AKALCPQ--LVIFPYNFKAYEEVADQLYNILHKHCHKVQAISCDEAFLDITE-KDMGDPE 557 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 IR + T T GIA +A+LA +AK + + + Sbjct: 558 LLASTIRKEIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCY------IPSVSVDEYLH 611 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQ 236 LP+ + GIG + +KL + T L ++K F E RG Sbjct: 612 KLPIKALPGIGHVLEEKLKKQNVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRL 671 Query: 237 LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT-- 294 + + I ++G R D + + + + +L+ R + IK Sbjct: 672 VGNIQ-ESKTIGAEVNWGVRFKDLQDSQCFLLNLCKEVSFRLQGCRVQGRTFTLKIKKRR 730 Query: 295 ------SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLG 348 + + S S+ + D + + + + G+ + Sbjct: 731 KDAGEPAKYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQVS 790 Query: 349 DFFSQGV 355 + Sbjct: 791 KLENADP 797 >UniRef50_Q38YP4 DNA-damage-inducible protein P n=30 Tax=Bacilli RepID=Q38YP4_LACSS Length = 376 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 80/365 (21%), Positives = 153/365 (41%), Gaps = 19/365 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYAS E +PDL KP+++ + G V N A+ GV Sbjct: 17 IIHIDMDAFYASIEEREQPDLRQKPLIIARDPSDTGGKGVVTTANYVARQYGVHSAMSAQ 76 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRD 115 K +L + V + N+ LY +S ++ ++ ++E + DEA+ D+T Sbjct: 77 KAAELIPKHQAVFKTPNFPLYQSVSAQIHDIFHTVTDKIEPIAFDEAYLDVTENKLGLTH 136 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 + ++ +L+ T L GI+ K LAK+A+ K R L E+ Sbjct: 137 TIEVVAYLQKAILEETQLVSSAGISYNKFLAKMASDYRKPAGR------TLVLPEQAIAF 190 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 +S LP++ G+G++ K+ +GI T DL F+ +HF + R +RG Sbjct: 191 LSRLPIEKFRGVGQKTVPKMQDLGIMTGADLLAQSEMFLMQHFGKLGYGLYRHVRGIDNR 250 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 + E+ ++ I ++G+ + ++ + S A A++LR ++ + ++ Sbjct: 251 PV-EYQRERKSIGNEHTYGQPLISEEQVQVQLKSLAVELAQRLRKNQKHGLTVVLKVR-- 307 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV 355 N Y + L ++ ++ A + +I QA + G+ + + Q Sbjct: 308 ----NRQYETITKRKTLGEYVGNAAELEAIANQIWQSIGQAEVGIRLLGITVTNLAPQTF 363 Query: 356 AQLNL 360 + L Sbjct: 364 ENITL 368 >UniRef50_A1A051 DNA-damage-inducible protein P n=10 Tax=Bifidobacterium RepID=A1A051_BIFAA Length = 471 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 90/424 (21%), Positives = 157/424 (37%), Gaps = 48/424 (11%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E P+ KPV++ N V A N EA+ G+ + + L Sbjct: 51 VLHIDMDAFFASLEVARHPEYADKPVIIGIGNRSVVSAANYEARKYGINSAMASSRARKL 110 Query: 62 FRRCGVVCFSSNYELYADMSNRVM-STLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 V + Y +MS R+ ++ R+E S+DE + D++G + + Sbjct: 111 CP--NGVFLPVDIHYYREMSRRIFTEVFSRVTDRIEQVSVDECYMDVSGALLRWKSPRAI 168 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G IR V +R H+T VGIA K +AK+A+ AK + + R + + + Sbjct: 169 GAWIRDQVARRYHITCSVGIAANKLVAKMASTNAKPDGM------LMIPVARHAEFVQMM 222 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN--VVLERTVRELRGEPCLQL 237 P+ + GIG + K+L+A G+ +V DLA + + + + RG + Sbjct: 223 PLRGIPGIGPSLEKRLNAWGVDSVADLAKMSMESLEQATGSAISARGLYMAARGLDDRPV 282 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + + R+F + D + + A LR R + ++ Sbjct: 283 AP-RAQGKSVGAERTFDKDTQDMRQVTSMLRWCCDDVAGTLRRRGLMARKVMVKLRFPDL 341 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAG----------HRYQKAGVML 347 + + L PT + + L A+ + AG+ Sbjct: 342 S------YATKGHTLDCPTDAASMLYPQCVALLLAMMGMPESSIDAISLTRPVRLAGMSA 395 Query: 348 GDFFS--QGVAQLNLFD--------------DNAPRPGSEQL---MTVMDTLNAKEGRGT 388 G QL+L D D P SE+L +D + K G+G+ Sbjct: 396 GGLVEAADAAVQLSLDDMLEEQNEAQRGRGTDTEPSTQSERLRGAEAALDAVRLKYGKGS 455 Query: 389 LYFA 392 + Sbjct: 456 VRLG 459 >UniRef50_C8NZM9 DNA polymerase IV n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZM9_ERYRH Length = 392 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 165/386 (42%), Gaps = 20/386 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDG-CVIARNAEAKALGVKMGDPWFKQK 59 + D+NAFYAS + L+GKPVVV SN G V + EA++ GV P K Sbjct: 4 VIFHIDINAFYASAHLITDSSLYGKPVVVCSNQRGSVVTTASYEARSFGVNSAMPLAHAK 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTD 118 L V+ +++LY ++S + M+ + S ++ SIDE + D+T ++ D Sbjct: 64 RLCPNLEVIEV--DFDLYQELSVKFMNIIRSYSAVMQPASIDECYVDMTEVIKKYEKPLD 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 EI+ + + L + +G+A K LAK+A+ K + + + + + Sbjct: 122 LAVEIQKNIWEALRLPISIGVAPNKFLAKMASDMQKPRG------ITVLRIREVSQKLWP 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 L ++ ++GIG++ KL +GI+T+ DLA + ++ V + V++ G ++ Sbjct: 176 LSIESMYGIGQKTVPKLKQIGIETIGDLARFNPDHLKSILGVNAQNFVQKANGYDHSVID 235 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 + I S++F + +TD +R AI + ++ + + +S I+ + Sbjct: 236 TDVTM-KSIGQSKTFKDAMTDLDEIRNAILNELVEVKRRMERQDVVGKTVSFSIRLDDYK 294 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV--A 356 + S T+D + D G V + + + Sbjct: 295 ------TATRSFTFDEYTRDQNLVFERLMSLYDEFEGEG-GVSFISVTMTNLLPKDEIIE 347 Query: 357 QLNLFDDNAPRPGSEQLMTVMDTLNA 382 QLN+FDD ++ + + LN Sbjct: 348 QLNIFDDLDEITVNDIIQRLNKELNQ 373 >UniRef50_A8YTI5 DNA-damage-inducible protein n=29 Tax=Lactobacillus RepID=A8YTI5_LACH4 Length = 406 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 144/369 (39%), Gaps = 20/369 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-----NNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYAS ET P+L K +V+ G V N A+ GV P Sbjct: 49 IIHLDMDAFYASVETQRNPELKNKALVIGQDPRNNGGHGVVATCNYVARKYGVHSAMPAI 108 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD- 115 K L + +V +++ Y +S ++ S + E++ +VE ++DEA+ D+T + ++ Sbjct: 109 KAVKLIPKSELVFVRPDFKKYRSVSAKIHSFMHEITDKVESIALDEAYLDVTHNKLGQNL 168 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 ++ + L G++ K LAK+ + AK + R + ++ Sbjct: 169 AVQVAIGLQRRIRTELGLNSSFGVSYNKFLAKMGSEYAKPFGR------TVILPYEAKQF 222 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + ++ G+G + ++L MGI T DL + K F + + G Sbjct: 223 LGMQKIEKFPGVGPKTQEQLHEMGIYTGADLQKVADFVLIKKFKKMGYFLAQHAHGIDLR 282 Query: 236 QLE-EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT 294 + + ++ I R++ I I Y ++L+ + + + + ++ Sbjct: 283 PVIADSDTNRKSIGMERTYEPAIYTRDEALTHIRHYCKHLEDELKKRNFFAQTVVIKVRD 342 Query: 295 SPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-AGHRYQKAGVMLGDFFSQ 353 + F + KL P+ D ++A D + GV + DF Sbjct: 343 NDFD------TVTKRRKLTKPSNSQYDYYDSARELFDKTSNFLEKGIRLIGVTVTDFKKD 396 Query: 354 GVAQLNLFD 362 +NLFD Sbjct: 397 EYQTINLFD 405 >UniRef50_A5G2F2 DNA-directed DNA polymerase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G2F2_ACICJ Length = 411 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 104/395 (26%), Positives = 157/395 (39%), Gaps = 23/395 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 A D +AFYAS E RP+L KPV+V G V A A+ GV+ P FK + L Sbjct: 37 IAHVDCDAFYASVEKRDRPELTDKPVIVGGGTRGVVAACCYIARLSGVRSAMPMFKARKL 96 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG- 120 V + YA + + + + L+P V+ SIDEA DL+G Sbjct: 97 CPDA--VVIAPEMRKYAAAAAEIRALMATLTPLVQPLSIDEAALDLSGTAALHRAPPAVV 154 Query: 121 -REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 V +TV +G+A + LAKLA K G +++ Sbjct: 155 LSRFARQVEAEVGVTVSIGLAANRLLAKLAAERDKPRGFAVLG-------AEAAAVLAPE 207 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV + G+G +++KL MGI V LA + R R RG ++ Sbjct: 208 PVGILPGVGPALARKLAGMGITRVGQLAALNDRAARARLGEDGPMLAARARGIDPRPIDP 267 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 T + I +F E I D S+ + + + A +LR+E + +KT+ F Sbjct: 268 ARAT-KSISAETTFAEDIDDAASLARVLFPLCEKLARRLRAEGFAAAGLVLKLKTARFE- 325 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGVAQL 358 ++ +V+L PTQ + I AA L + AG RY+ G+ + Sbjct: 326 -----THTHAVRLTAPTQLAETIFEAAKPVL--MRAAGPRYRLIGIGAARLTDAAEADRG 378 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAG 393 +L D P ++ L AK G G + G Sbjct: 379 DLVDQET--PRRAAREDAVERLRAKFGTGIIRRGG 411 >UniRef50_C9M6E1 UmuC protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6E1_9BACT Length = 429 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 136/408 (33%), Positives = 210/408 (51%), Gaps = 7/408 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 + LCD + F+ SCE VFRP+L G+PVVVLS+NDGCVI+R+ EAK LG+ M P+FK Sbjct: 7 LIGLCDGDNFFVSCERVFRPELNGRPVVVLSSNDGCVISRSNEAKRLGIPMCAPFFKIAP 66 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L RR G+ S N E+Y +MS+R+M+ + + S +VE YS+DEAF +L+ + + D Sbjct: 67 LVRRHGMTALSGNMEMYREMSDRMMAVIAQFSDQVEQYSVDEAFFNLS-IASLTDPAAHC 125 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +R T+ +R L V +G A +KTLAK A+ K ++ G V L E ++++P Sbjct: 126 LALRRTIARRIGLPVSIGAAPSKTLAKAASEMTK--GKEPG--VRLIRPEETACAVASMP 181 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V+ VWGIG+R ++K+ + GI+ V L +++ HF++ + ELRG L Sbjct: 182 VERVWGIGKRTARKMLSFGIRLVPQLTARPNGWLKGHFSIREVQIADELRGLKRFPLSSQ 241 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 T Q I +R+ + + + + +LR H + FI+TS F+ Sbjct: 242 EETPQSIQVTRTSAGPLRTEDELWDGLIRHILGGTARLRRHHLAAGRMELFIRTSYFSSQ 301 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + + AS PT D + A + L ++Q G Y+ +GV D QL Sbjct: 302 SRFASSRAS--FSPPTDDDLACLRAGRQILSRVFQPGWNYRASGVRFSDLSPSQPRQLTF 359 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLS 408 D +LM +D LNA G GT+ A + + + +M S Sbjct: 360 ADQLPGTRKRHRLMEAVDALNADLGAGTVLPAALLSKNRSAAQHSMTS 407 >UniRef50_C5NXH9 DNA polymerase IV 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXH9_9BACL Length = 402 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 155/375 (41%), Gaps = 23/375 (6%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLS---NNDGCVIARNAEAKALGVKMGDPWFK 57 + A D+N FYAS E + P+L GKP+ + G ++ N EA+ LG+K Sbjct: 4 VIAHIDMNCFYASVEEKYNPELKGKPLAIAGEVKTRHGIIVTSNYEARELGIKTTMRVGD 63 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 + ++ + + Y S + + E + ++EI S+DEA+ DL+ + Sbjct: 64 ARKIYP--NIKILRPDMPKYQQESKLIFDLVREYTDKIEIVSVDEAYIDLSDFS---EPI 118 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 I+ + ++ + VG++ K AK+ ++ K + N + + ++ Sbjct: 119 KVIATIQRRIYKQLGMPSSVGVSFNKFFAKMGSNLKKPLG------FSIINKKNYKDILW 172 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 L + ++ G G +KKL +GI T+ D+A + + V R + GE +L Sbjct: 173 NLDIGEMHGCGNASTKKLKKIGINTIGDIAVANEVILHSLLGVQGLRLKNKANGEGNSEL 232 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + ++ I S++F + D + + I + + + +++S IS ++ S F Sbjct: 233 KYTV-DRKSIGNSKTFTNDLIDEDDILKEIKKLSEKVSSRVKSRSYVGNNISIMVRFSDF 291 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV-- 355 + S K+ D+ DI N A L + + GV L + Sbjct: 292 K------TITRSKKIPEFICDTNDIFNYAWELLLEHYDFTKGIRLLGVSLNEIKKVKGLK 345 Query: 356 AQLNLFDDNAPRPGS 370 QL++FD + Sbjct: 346 VQLDIFDKKDYKEEE 360 >UniRef50_A8UAY3 ImpB/MucB/SamB family protein n=5 Tax=Bacilli RepID=A8UAY3_9LACT Length = 432 Score = 353 bits (908), Expect = 6e-96, Method: Composition-based stats. Identities = 86/417 (20%), Positives = 172/417 (41%), Gaps = 20/417 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN----DGCVIARNAEAKA-LGVKMGDPWF 56 DV +FYAS E V R K ++V+ +N G V+A + AK LG++ + Sbjct: 13 IFCIDVKSFYASVECVERGLHPLKALLVVMSNADKPGGIVLAASPMAKKVLGIRNVTRKW 72 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEEL--SPRVEIYSIDEAFCDLTGVRNCR 114 + +V Y + + + + IYSIDE+F + G Sbjct: 73 EIPY---HPDLVIVPPRMSYYIKKNTEINDIFRKYVSDEDLHIYSIDESFISVRGSLKLF 129 Query: 115 ---DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLER 171 + R I+ + ++T L V +GI +AKLA K+ + + + + Sbjct: 130 KKKSAYELARMIQYHIFKKTGLYVTIGIGDNMLMAKLALDNGAKYNSEL--IAEWRYEDV 187 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 + + + D+WGIG R ++L+++GIKTV DLA + +R ++ E+ G Sbjct: 188 PKTVWKIENMTDMWGIGSRTERRLNSLGIKTVYDLAHANFYQLRDSMGLIGEQLYANAWG 247 Query: 232 EPCLQLEE-FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFIST 290 + + + P ++ S+ + ++ I A + A ++R H +S Sbjct: 248 IDRSDIRDSYRPLEKSYGNSQILKKDYFKRQEIKIVIREMAEQVATRIRKHHCQTGCVSL 307 Query: 291 FIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF 350 + S + G S +K+ + T +++ ++ + ++ ++ G+ Sbjct: 308 SVSYSKYEEK---DGFSRQLKIPS-TSNTKKLVEYCFEIFNKYYEDDKSVRRIGITYSKL 363 Query: 351 FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAML 407 QL+LF++ + +E+L ++D + K G +L A + + R+ L Sbjct: 364 SYTSDIQLDLFENPTEQITNEKLDLLVDKIRDKYGFQSLVHASSLMDGATAINRSSL 420 >UniRef50_D1BPW6 UMUC domain protein DNA-repair protein n=2 Tax=Veillonella RepID=D1BPW6_VEIPT Length = 500 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 172/464 (37%), Gaps = 76/464 (16%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AF+AS E + P+ G PV+V ++ G V + EA+ GV P + K L Sbjct: 1 MHVDMDAFFASIEQLDHPEYKGHPVIVGGLSSRGVVATCSYEARKFGVHSAMPILRAKKL 60 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDFG 120 + + Y ++SN++ S ++E +P +E SIDEAF +++G+ G Sbjct: 61 CPDG--IYVYPRMDRYKEVSNQIFSIMKEFTPYIEPLSIDEAFLEVSGMSTMYSGPKALG 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + I+ V ++T L + G+A K LAKLA+ K + + R++++++ LP Sbjct: 119 QAIKDRVFEKTGLIISAGLAPNKFLAKLASDLDKPDG------LVVIPYGREKEVLAPLP 172 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTD-IRFIRKHFNVVLERTVRELRGEPCLQLEE 239 + +WG+G R K L A G + + + +R G +E Sbjct: 173 IKRIWGVGPRTEKILKAGGFHLIGHIQSLPDESTLIPLVGNQAKRIWELANGIDDRPVET 232 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 Q I ++ E +T+ ++ +A R +++LR Y +S ++ F Sbjct: 233 DRKI-QSIGAEETYEEDLTEGRAIELEFRYFANRLSKRLRRRSLYGHTVSIKVRYDDFT- 290 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA---------GHRYQKAG------ 344 S +L TP+ A + + Q + G Sbjct: 291 -----TVSRQKRLDTPSDHEHVFFETALLLWNKLLQDKTSKNPKGTKKDVEALGATMKVK 345 Query: 345 -----------------------------------VMLGDFF-----SQGVAQLNLFDDN 364 + L + Q +LF+ Sbjct: 346 STDFRYSSSKDNRSNHIGSKYSSSSEIAFMDPPGPIRLLGLTVSGLDEEVPMQDSLFESP 405 Query: 365 APRPGSEQLMTVMDTLNAKEGRGTLYFAG--QGIQQQWQMKRAM 406 + ++L +V+D+L +K G + Q ++R Sbjct: 406 QDKT-EDKLSSVLDSLESKFGETAVMSGALWQRFHGDNGIRRKR 448 >UniRef50_Q0FEJ5 DNA polymerase IV n=3 Tax=Rhodobacterales RepID=Q0FEJ5_9RHOB Length = 391 Score = 353 bits (906), Expect = 9e-96, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 144/396 (36%), Gaps = 20/396 (5%) Query: 3 ALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLF 62 A D +AFYAS E P KP+++ G V A+ GVK P FK L Sbjct: 12 AHIDCDAFYASVEKRDNPKFKDKPLIIGGGQRGVVSTACYIARIKGVKSAMPMFKALKLC 71 Query: 63 RRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD--LTDFG 120 + + + YA S + + ELSP +E S+DEAF DL G Sbjct: 72 PEA--IVIAPRMDAYAKASKEINEMMSELSPSIEPLSLDEAFIDLRGTEKLHGEPPALSM 129 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 + + ++ ++ VG++ K LAKLA+ K G + + ++ Sbjct: 130 ARLVQRIEKQLKISASVGLSYNKYLAKLASDLDKPRGFSIIGKY------KIEEFLAPKS 183 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + +WG+G+ +L+ GI+ DL + + + + + RG + Sbjct: 184 IGLIWGVGKVAQMRLEQDGIRIFADLQRRSHQELIDKYQNMGDHLWHLCRGIDNRNVIA- 242 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + I +F I + + I + + +++ +S++ I+ Sbjct: 243 KNVIKSISKETTFSSDINNIEKLDGYIWRLSEQVSQRAKSKNLLGHVITLK------IKT 296 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-QLN 359 + + S PTQ + I A R LD + G ++ GV + + QLN Sbjct: 297 KKFKTISRRKTQREPTQIAEKIYAEARRMLDEVASEG-PFRLIGVGISNLIDADKIDQLN 355 Query: 360 LFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQG 395 F D + + G+ + Sbjct: 356 DF-LKTDEAKKADAERATDLIKKRFGKNAILKGRSL 390 >UniRef50_C4FTM8 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTM8_9FIRM Length = 381 Score = 353 bits (906), Expect = 9e-96, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 151/367 (41%), Gaps = 23/367 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVL-----SNNDGCVIARNAEAKALGVKMGDPWF 56 D++AFYA+ E P + KP+V+ + G V N +A+ G+ Sbjct: 27 ILHVDMDAFYANVEARDNPAIAYKPIVIAKHPKLTGGRGIVSTCNYKAREYGIHSAMTAA 86 Query: 57 KQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRD 115 + V + ++ Y ++S ++ + + + +E S+DEA+ D+T + Sbjct: 87 EAFKRCPHA--VFIAGDWSHYQEVSQQIRTIFAQYTDLIEPMSLDEAYLDVTHNKLGIQS 144 Query: 116 LTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKL 175 T + I+A + +LT +G++ K LAK+A+ K + + + ++ + Sbjct: 145 ATHLAQRIQAQIKAELNLTCSIGVSYNKFLAKIASDYRKPFG------ITVVTPDQALEF 198 Query: 176 MSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCL 235 + LP+D +G+GR+ GI T DL ++ + +HF + + ++RG Sbjct: 199 LDDLPIDKFYGVGRQSVPYFHQRGIMTGADLRAIELEDLIEHFGKMGKSLYYKVRGVHDA 258 Query: 236 QLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTS 295 ++ ++ I +F + + + + A+ R E L++++ + + ++ I+ Sbjct: 259 PVQPHR-ERKSIGKETTFIQFLAEEEGVLDALTQLTKRVVEILKAKNFHAQTVTLKIRYD 317 Query: 296 PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF--SQ 353 F + + L +P+QD I A + + GV + Sbjct: 318 DFE------TLTRQLSLGSPSQDVEVISQAVQELWELHGHLHKSVRLLGVSTAGLIQLDK 371 Query: 354 GVAQLNL 360 QL+ Sbjct: 372 VHTQLSF 378 >UniRef50_B7S1R7 ImpB/MucB/SamB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R7_9GAMM Length = 359 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 137/371 (36%), Gaps = 26/371 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D ++FYAS E P L +PV V + G + N EA+ GV+ P + Sbjct: 6 IIHVDADSFYASVEMREDPSLAARPVAVGGSAQRRGVIATCNYEARKFGVRSAMPSSRAL 65 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCR-DLTD 118 L G++ S+ ++LY ++S + ++ + ++E S+DEA+ D++ T Sbjct: 66 QLCP--GLIILSARFDLYREVSQQFHQIFKDYTDKIEPLSLDEAYLDVSDCEQFHGSATL 123 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 ++IR + Q +LTV G+A K LAK+ + K E + + Sbjct: 124 IAQDIRRRIKQELNLTVSAGVAPNKFLAKVGSDWDKPDG------CFTITPEDVAEFVVD 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV + G+G + KL+ +G T +L + + K F R + G ++ Sbjct: 178 LPVSRINGVGAVTAAKLEKLGATTCGELQSIPLEVLVKRFGKYGSRLAKVAHGLDDRDVQ 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS--EHQYCRFISTFIKTSP 296 ++ I ++ I M QA+ + E +K Sbjct: 238 TSRT-RKSISVENTYHSDIEQLQQMDQALTRLLDELEGRFHKIEERYRPHKRFVKVKFDN 296 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAAT-RSLDAIWQAG-HRYQKA--GVMLGDFFS 352 F + P + A L + WQ G + G+ L Sbjct: 297 FEQTTIEE--------IIPDSGEHWLNEKAYHALLHSAWQRGSRPVRLLGAGLRLEPLHK 348 Query: 353 QGVAQLNLFDD 363 + QL LF Sbjct: 349 EMEMQLVLFSQ 359 >UniRef50_Q2RNH1 DNA-directed DNA polymerase n=5 Tax=Alphaproteobacteria RepID=Q2RNH1_RHORT Length = 421 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 142/372 (38%), Gaps = 20/372 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 A D +AFYAS E P L +P++V G A+ G + P FK + Sbjct: 38 IAHIDCDAFYASVEKRDNPSLRDRPLIVGHPGGRGVATTACYIARRFGARSAMPMFKCLE 97 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLT-GVRNCRDLTDF 119 L V + Y +S +V + + E + R+E S+DEA+ DL+ G Sbjct: 98 LCPEA--VVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAV 155 Query: 120 G-REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 I V + +TV +G++ + LAKLA+ K + + L++ Sbjct: 156 SLATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQG------FTVIDEAEAPALLAP 209 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 +PV + G+G ++L +G+ T+ DL + F + G + Sbjct: 210 MPVKRLHGVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTIS 269 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 T + I +F ++ P + +A+ + R A L + +KT F Sbjct: 270 PDRET-KSISAETTFERDLSRLPDLARALGPLSERVARALTRNALAGATVVLKLKTHDFR 328 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFS-QGVAQ 357 + + +L PT + I AA R L+ G R++ GV + D Sbjct: 329 I------LTRHARLGDPTARAEVIAGAARRLLERETD-GRRFRLIGVGMADLRPGSEADP 381 Query: 358 LNLFDDNAPRPG 369 +LF + P Sbjct: 382 PDLFARSPPTAR 393 >UniRef50_Q5WYY8 DNA polymerase IV n=64 Tax=Bacteria RepID=DPO4_LEGPL Length = 355 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 80/369 (21%), Positives = 145/369 (39%), Gaps = 29/369 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN--NDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P+L KP+ V + + G + N A+ G++ P Sbjct: 7 IIHIDMDCFYAAIEMRDFPELANKPIAVGGDAKHRGVIATCNYAARQFGIRSAMPTAHAL 66 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L R ++ ++Y S + S L E + +E S+DEA+ D+T C T Sbjct: 67 KLCRE--LILRPVRMDVYQKESQYIRSLLTEYTDLIEPLSLDEAYLDVTESTQCQGSATW 124 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 EIRA + Q LT GIA K+LAK+A+ K + + E + Sbjct: 125 IAEEIRARIYQTRQLTASAGIAPNKSLAKIASDWHKPNGQ------MVIRPEDVSAFVLD 178 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LPV ++G+G ++ +KL A+ IKT DL I ++ + F + +R RG + Sbjct: 179 LPVRKLFGVGPKMEEKLGALNIKTCADLQRYSIEYLLQKFGTMGQRLYELARGIDNRPVN 238 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYC--RFISTFIKTSP 296 ++ I ++ + + + + + AR +++ + + +K + Sbjct: 239 PER-IRKSISVEETYPKDLPNSEACLAVLPDLMARLEARIQRAGKISGIHNLFVKLKFND 297 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGV- 355 F + D D+I + + G + G+ + + Sbjct: 298 F-----------QQTTIERVMDKIDLIVLRQLIQEGFARRGMPVRLLGIGI-KLKQENTY 345 Query: 356 --AQLNLFD 362 QL L D Sbjct: 346 QSVQLPLLD 354 >UniRef50_B7GNF3 Transcriptional regulator, Fis family n=9 Tax=Bifidobacteriaceae RepID=B7GNF3_BIFLI Length = 448 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 88/417 (21%), Positives = 149/417 (35%), Gaps = 40/417 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E P L GKPV++ + V A + EA+ G+ P + L Sbjct: 47 VLHIDMDAFYASLEVARNPGLKGKPVIIGTGPRAVVSAASYEARRYGINSAMPAARAHQL 106 Query: 62 FRRCGVVCFSSNYELYADMSNRVM-STLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDF 119 V + Y MS+R+M ++ R E S+DE + D+ T + + Sbjct: 107 CP--NGVFLPVDMAYYRMMSHRIMHEVFLTVTDRFEQVSVDEGYMDVSTALLEWGRPSAI 164 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 G IRA V +R H+T VGIA K +AK+A+ AK L R + + + Sbjct: 165 GAWIRAQVAERFHVTCSVGIACNKLVAKMASTNAKPDGM------LLIPAARSAEFVQMM 218 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN--VVLERTVRELRGEPCLQL 237 P+ + GIG + K+L+A G+ +V +LA D + + G ++ Sbjct: 219 PLRGIPGIGPSLEKRLNAWGVHSVAELAQLDETALTRATGSPAAARGLWAASHGLDSRKI 278 Query: 238 EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPF 297 + I + E D + + S A LR + R ++ ++ + Sbjct: 279 TTVREE-KSIGSEETLAEDTRDMRVVCGLLRSACDEVASTLRRKGLVARTLTVKLRFADL 337 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW----------QAGHRYQKAGVML 347 + + S + PT + + R L + + AG+ Sbjct: 338 S------YQTRSFTMERPTDTAGVLYPECVRQLKVMLGLPASAESATPLPKTIRLAGMST 391 Query: 348 GDFFS--QGVAQLNLFDDNAP---------RPGSEQLMTVMDTLNAKEGRGTLYFAG 393 Q +L D + +D + K G F Sbjct: 392 SSLSEAAATAVQPSLDDMLEEAANARGQTSQARLHDAEAALDAVRRKFGSKAAQFGA 448 >UniRef50_D2R9L6 ImpB/MucB/SamB family protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9L6_GARVA Length = 409 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 83/423 (19%), Positives = 159/423 (37%), Gaps = 52/423 (12%) Query: 7 VNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDLFRRCG 66 ++AFYAS E P+L GKP+++ + N V A + EA+A GV P K ++L + Sbjct: 1 MDAFYASLEVARHPELKGKPLIIGTGNRAVVSAASYEARAYGVNSAMPVVKARNLCPQG- 59 Query: 67 VVCFSSNYELYADMSNRVMS-TLEELSPRVEIYSIDEAFCDL-TGVRNCRDLTDFGREIR 124 + + Y+ +S + ++ +VE S+DE + ++ + + + + G +R Sbjct: 60 -IFLPVDIPYYSSVSKSIFENIFLHITNQVEKVSVDECYMNVKSALLQWKSPVNIGTWVR 118 Query: 125 ATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDV 184 V ++ H+T VGIA K +AK+A+ AK L + +S +P+ + Sbjct: 119 KEVFEKYHITCSVGIASNKLIAKMASTNAKPNGM------LLIPQKCNEDFVSIMPLRAI 172 Query: 185 WGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN--VVLERTVRELRGEPCLQLEEFAP 242 GIG + KL+ G+ TV L + D + + ++ + +RG + AP Sbjct: 173 PGIGSSLIHKLEDWGLSTVASLKNVDEATLTRITGSQILARMIYQSVRGIDERTVTAHAP 232 Query: 243 TKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNEP 302 + I R+ T+ +++Q + + ++LR+ R I+ ++ Sbjct: 233 E-KSIGTERTLDTDTTNENAVKQLLQQCCSEVTQQLRNRKLMARTITLKLRFGD------ 285 Query: 303 YYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGH-------------RYQKAGVMLGD 349 + + S L T + + L H + AGV + Sbjct: 286 LHYVTRSSTLQNATDSTHEFYEHVVVLLSRANPTVHNYILGGNNTKLLSPVRLAGVTANN 345 Query: 350 FFSQGVA--QLNLFDDNAPRPGSEQ------------------LMTVMDTLNAKEGRGTL 389 Q +L D + +D + K G Sbjct: 346 LVPANKVSLQPSLNDILEENTRESKNPTQNIMSTMNKNTRLRHAEHALDAVRKKYGNNAA 405 Query: 390 YFA 392 + Sbjct: 406 HIG 408 >UniRef50_A4BJD8 DNA polymerase IV n=1 Tax=Reinekea blandensis MED297 RepID=A4BJD8_9GAMM Length = 365 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 144/379 (37%), Gaps = 24/379 (6%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN-DGCVIARNAEAKALGVKMGDPWFKQKD 60 D + +YA+ E P+L G+PV V + N EA+ G+ P + Sbjct: 5 IIHIDCDCYYAALEMRDFPELRGRPVAVGGQGPRSVLSTCNYEARHYGLHSAMPSRRALS 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLTDF 119 L G++ +++Y +S ++ + R+E S+DEAF D+T + Sbjct: 65 LCP--GLIIQPHRFDVYRAVSEQIRQIFSRYTDRIEPLSLDEAFLDVTDSTWFGGSASML 122 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 IR ++Q T +TV GIA K LAK+A+ K + + E + +S+L Sbjct: 123 AEHIRQEIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYS------ISPEAVDEFLSSL 176 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 P+ + G+G + S+KL G+ T D+ + + ++F + RG + Sbjct: 177 PLKKINGVGSKFSQKLAEHGLHTCGDVLRWSLPRLTQYFGKSGLWLYQRARGIDHRPVG- 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEH-QYCRFISTFIKTSPFA 298 ++ + +F + + + +L ++ + + ++ + F+ Sbjct: 236 VRSDRKSLSVEHTFDTDLAGESACLTQLTPLLDTLNRRLAAKDPLPIKGVFVKVRFNDFS 295 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 + L ++ AA + ++ + G+ + Q QL Sbjct: 296 ------TTTMERGLPCLRASYEQLLKAACQ------KSHRGVRLLGLGVRFEEKQSKDQL 343 Query: 359 NLFDDNAPRPGSEQLMTVM 377 L+ + L + + Sbjct: 344 ELWPVATAQGNRASLESSL 362 >UniRef50_C3Y6K1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3Y6K1_BRAFL Length = 1191 Score = 350 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 75/414 (18%), Positives = 138/414 (33%), Gaps = 72/414 (17%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND-------------------------- 34 + D++ F+ S P+L GKPV V + Sbjct: 380 VVMHLDMDCFFVSVGLRNHPNLRGKPVAVTHSKGKGHEQKIRPGMDPEYERAYWEKRAPH 439 Query: 35 -------------------------GCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVC 69 + + + EA+ GVK G L + Sbjct: 440 RHSITDKTEDNATRGNAQRDTYMSFSEIASCSYEARKAGVKNGMFMGPALKLCPDLKTI- 498 Query: 70 FSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT--DFGREIRATV 127 ++E Y +++ + L + +E S DEAF D+T + T D +R + Sbjct: 499 -PYDFEGYKEVAQEMYGILASYTHEIEAVSCDEAFVDVTDILADTGATPDDLATVLRKEI 557 Query: 128 LQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGI 187 L++T VG+A + LA++A AK + E +S V ++ G+ Sbjct: 558 LEKTQCPASVGLASSVLLARMATKRAKPNGQFYL------PPEEVLDFVSPQTVRELPGV 611 Query: 188 GRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEEFAPTKQE 246 GR + +L MG+ T DL + +++ F + R RG+ QL+ ++ Sbjct: 612 GRSLESRLKVMGVVTCGDLQKVTLPTLQREFGPKTGQALYRSCRGQDDRQLK-VERERKS 670 Query: 247 IICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKT---------SPF 297 + ++G R T + + A +L+ + ++ + S F Sbjct: 671 VSAEINYGIRFTKDTEAETFMYNLAEEVQRRLQKAGLKGKTVTLKVMARKADAPVEPSKF 730 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFF 351 + S S L T D + I A L + + G+ + Sbjct: 731 MGHGICDSLSKSSTLGLATDDHKVIGKEAWNILCQMKLLPSDNRGLGIQITRLV 784 >UniRef50_B1VHB3 DNA polymerase IV n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VHB3_CORU7 Length = 477 Score = 350 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 148/363 (40%), Gaps = 20/363 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 A D++AFYAS E + RP L +PV+V + G V + EA+A G + P + Sbjct: 4 VAHIDMDAFYASVEQLTRPTLRDRPVLVGGMSGRGVVAGASYEARAYGARSAMPMHQAIR 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L R + LY +S R+ + E + VE S+DE F + G+ + + Sbjct: 64 LCRN-RAIVIQPRSVLYKMISRRIFQVIAEHAGVVEQLSVDEGFAEPQGLVDAAAARRWA 122 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 +++ V + T L +G+A TK AK+A+ AK E + P Sbjct: 123 EDLQRAVEEATELPCSIGMASTKLDAKMASDLAKPHGIFVV--------EDRMATFGPRP 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V D+WGIGR KL +G+ T+ D D ++ V G+ + Sbjct: 175 VGDLWGIGRVAQAKLADIGVHTIQQFVDMDPTDVKSLLGKVGLEVQVMAGGDDPRPVAP- 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 ++I ++ Y + + A +A +LR + + R I+ I+TS FAL+ Sbjct: 234 RAEAKQISAEQTLPVDARTYRDVLNIMELSARQAYRRLRKDGRAARTITVKIRTSDFALH 293 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + S L PT D ++ AA L +G + GV Q L Sbjct: 294 ------TRSTTLPAPTDDFEQLLRAARAVLPRPEDSG-AVRLVGVGFSGLSHD--RQEML 344 Query: 361 FDD 363 F + Sbjct: 345 FPE 347 >UniRef50_A5Z8E0 Putative uncharacterized protein n=10 Tax=Clostridiales RepID=A5Z8E0_9FIRM Length = 428 Score = 350 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 82/433 (18%), Positives = 161/433 (37%), Gaps = 44/433 (10%) Query: 1 MFALCDVNAFYASC-------ETVFRP---DLWGKPVVVLSNN---DGCVIARNAEAKAL 47 + DVN+ Y S E D+ P ++ + G V+A++ AK Sbjct: 3 IIFHIDVNSAYLSWTAVKLLKEATKDEKKIDIRNIPAIIGGDREKRHGIVLAKSISAKKF 62 Query: 48 GVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL 107 G+ G+P ++ + Y + S+++M+ L +P +E S+DE + D Sbjct: 63 GIVTGEPIANALQKCP--NILIVPPEHGYYNEQSHKLMNLLRTFTPDIEQVSVDECYMDF 120 Query: 108 TGVRNCR-DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDL 166 +G++N +I+ TV ++ TV VGI+ K LAK+A+ K + T Sbjct: 121 SGIQNEYPSPLACAYKIKDTVKEKLGFTVNVGISDVKVLAKMASDFTKPDKVHTL----- 175 Query: 167 SNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTV 226 ++ M LPV++++ G+ L +GI + LA + + H + Sbjct: 176 -YRREIKEKMWQLPVEELYMAGKSSVNTLHKLGIYNIGQLATSPEYILEAHLKKHGKILW 234 Query: 227 RELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCR 286 G + + + S + + + + + + + + A +LR Q + Sbjct: 235 EYANGIDKSVVNTKREELKGVGNSITLPYDLDNMEEIEKILLQLSEKVAGRLRKGKQMAK 294 Query: 287 FISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQA--GHRYQKAG 344 ++ +K + F S L T +I + +W+ + G Sbjct: 295 TVAVEVKYNDFIK------ASRQTTLDRCTDSGTEIYQLSKELFRELWEKDGNKSVRLLG 348 Query: 345 VMLGDFFSQGV-AQLNLFDDNAP-------------RPGSEQLMTVMDTLNAKEGRGTLY 390 + + QG Q+++ D A R ++L +D + K G + Sbjct: 349 IRTANLEEQGALEQMSIMDIMAQTTKKQQNATTNISREKMKKLDKALDAIKNKYGEDKIK 408 Query: 391 FAGQGIQQQWQMK 403 A +Q MK Sbjct: 409 RASLLAEQTVDMK 421 >UniRef50_B1YIX5 DNA-directed DNA polymerase n=2 Tax=Exiguobacterium RepID=B1YIX5_EXIS2 Length = 441 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 105/422 (24%), Positives = 174/422 (41%), Gaps = 28/422 (6%) Query: 2 FALCDVNAFYASCETVFR--PDLWGKPVVV--LSNNDGCVIARNAEAKALGVKMGDPWFK 57 D +FYASCE +R P L K VV L+ + ++A + K LG+K ++ Sbjct: 12 IFCVDSVSFYASCECRYRNLPPLTTKLAVVSDLTRSGSVILAASPALKQLGIKTASRLYQ 71 Query: 58 QKDLF--RRCGVVCFSSNYELYADMSNRVMSTLEELSPR--VEIYSIDEAFCDLTGVRNC 113 + L R +V Y S V+ L + +P + IYSIDE F D++G Sbjct: 72 IEQLPYRERKQIVLVEPRMLAYMKTSIEVLDVLHQFAPPDAIRIYSIDENFVDMSGTERL 131 Query: 114 RDL-TDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAA-KKWQRQTGGVVDLSNLER 171 T+ +I+ + Q+T + V +GI +AKL K+ G D+S Sbjct: 132 FGSDTETAWKIQTAIWQQTGIPVRIGIGPNNVIAKLVLDLRGKREGIAQCGYADVS---- 187 Query: 172 QRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRG 231 +L+ PV +WG+GR + + L MGI T+ DLA + + + F V+ G Sbjct: 188 --RLLHDFPVRKMWGVGRMMEQHLSVMGIHTIGDLAAAPVEDLHERFGVIGAELWHHAWG 245 Query: 232 EPCLQ--------LEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQ 283 TK+ I + Y +R + A+ A ++R +Q Sbjct: 246 IDGSPTIIDPMTLFRTAPDTKRTIGHGVTLMRDYYQYEQIRLVLAELASDVAARVRFSNQ 305 Query: 284 YCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKA 343 + ++ S G S ++L PT D R ++ + + W G + Sbjct: 306 VGWTVHLGVRYSRH---VARDGFSKQLRLPYPTADERLLLRHILQLFEPNWLDGEPVRFL 362 Query: 344 GVMLGDFFSQ-GVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQM 402 V LG G QL+LF+DN ++L+ +D +N + G+GT+ A + Sbjct: 363 SVALGQLTPDQGTLQLSLFEDNTKVWRRKRLLKAIDHVNLRYGKGTIRLAVSFLDTSVAK 422 Query: 403 KR 404 +R Sbjct: 423 RR 424 >UniRef50_Q98JM5 DNA polymerase IV 2 n=4 Tax=Bacteria RepID=DPO42_RHILO Length = 415 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 169/413 (40%), Gaps = 32/413 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D++AFYAS E + P L GKP+ V G V+A + EA+A GV+ G P K ++L Sbjct: 7 ILHADLDAFYASVEQLLDPSLRGKPIAVGG---GVVLAASYEARAFGVRGGMPGRKAREL 63 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRD-LTDFG 120 + ++ N+ Y + + + L++ +P VE SIDEAF D+ G + D Sbjct: 64 CPQ--LIFVGGNFSHYQRLGDAAIKVLDDFTPVVERISIDEAFADVAGCTHLFGQPRDIA 121 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 IR V L + +G+A+TK LAK+A+ AK + + + + + LP Sbjct: 122 TAIRHRVRAELGLPISIGVARTKHLAKIASQVAKPDG------LVVVDPGTELDFLHDLP 175 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEE 239 V +WG+G +L +GI+T+ +LA T + + E+ +LE Sbjct: 176 VSLMWGVGPATKSRLAEIGIQTIGELARTHSGALTRLLGPAAGEKLAALAWNRDPRKLET 235 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFAL 299 + G++ + + A R A +LR++ + R ++ ++ + + Sbjct: 236 RRRA-HSAGAQSALGQKPAVARVIVPTLLHLADRVASRLRAKARPGRTVTVRVRFADLSA 294 Query: 300 NEPYYGNSASVKLLTPTQDSRDIINAATRSLDAI---WQAGHRYQKAGVMLGDFFSQGVA 356 + S+ L P + + A + + + + Sbjct: 295 ------VTRSITLDQPISATTMLAEIAGDLVRGVLADHPREKTISLLAISVSHLEESAEL 348 Query: 357 QLNL---FDDNAPRPGSEQ------LMTVMDTLNAKEGRGTLYFAGQGIQQQW 400 QL+L D RPGS++ +D + + G+ + + ++ Sbjct: 349 QLDLPLGLADEKRRPGSKKGLARFGADRAIDKIRERFGKQAVGYGTVALEAAR 401 >UniRef50_B9XRF0 DNA polymerase III, alpha subunit n=1 Tax=bacterium Ellin514 RepID=B9XRF0_9BACT Length = 1420 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 85/411 (20%), Positives = 158/411 (38%), Gaps = 24/411 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D +AF+AS E L GK + V G + + + EA+ GV P + + L Sbjct: 13 IVHLDADAFFASVEQAADARLRGKAMAVGGEKRGIIASASYEARKFGVYTPMPTVRARKL 72 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFGR 121 + ++ ++E Y S + S + +P VEI SIDE + DLTG R + Sbjct: 73 CPK--LIIVPGDFEKYERFSRWMFSYAYDFTPEVEISSIDEGYFDLTGARK--SPLEIAE 128 Query: 122 EIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPV 181 IR + +TV GIA K ++++A+ K + L + + LP Sbjct: 129 IIRGAIRGALKITVSEGIACNKLVSQIASKLNKPAAFKQ------VPLGGEIPFLHPLPN 182 Query: 182 DDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFA 241 + G+G + KL+A G+ + +A T + ++ + G L + + Sbjct: 183 KWLPGVGPTTATKLNAAGLIRIGHIAKTPLDLLQLLMGNMARSLKEFADGIDERPLIQES 242 Query: 242 PTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALNE 301 + +FG TD + + A ++R++ + R ++ ++ + A ++ Sbjct: 243 EPAKSYGHQETFGVDQTDEEFIEATLKRMADSLMAQVRADDKTIRTLTVKVRYNDMAEDQ 302 Query: 302 PYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA-QLNL 360 LL PT DI + W+ + + L + +S +L L Sbjct: 303 AGES------LLEPTDLETDIYGRIRVLMKQAWRRRVSLRMVSLRLSNVYSGIFRAELAL 356 Query: 361 FDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRY 411 +L + +D L G+ + +Q++ A SP Y Sbjct: 357 ERSAEQHEAKRRLASAVDQLRQSRGKQVILRG-----HDFQLREA--SPDY 400 >UniRef50_B0TQD1 DNA polymerase IV n=7 Tax=Bacteria RepID=DPO4_SHEHH Length = 358 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 69/374 (18%), Positives = 137/374 (36%), Gaps = 36/374 (9%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P+L GKP+ V + G + N EA+ GV+ Sbjct: 4 IIHVDMDCFYAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARQFGVRSAMASGYAL 63 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNC-RDLTD 118 L ++ ++Y ++SN++ + E + +E S+DEA+ D+T +C T Sbjct: 64 KLCP--DLILVPGRMQVYKEVSNQIRAVFERYTDLIEPLSLDEAYLDVTESSHCKGSATL 121 Query: 119 FGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSA 178 IRA +L T LT GIA K LAK+A+ K + + E + + Sbjct: 122 MAEAIRAEILAETGLTASAGIAPVKFLAKIASDLNKPNGQY------VIRPEMIEEFVKT 175 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 LP+ + G+G+ +KKL +G+ T D+ + + F + +G + Sbjct: 176 LPLIKIPGVGKVTAKKLADLGLHTCSDIQAYPEPKLVERFGKFGSVLIERSKGIDKRAIL 235 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS--EHQYCRFISTFIKTSP 296 ++ + + + I R + ++ + + +K Sbjct: 236 PNR-ERKSVGVETTLAKDIHTLEQCRAVMPQLIQELGARVSRSAKDRAINKQVVKLKFED 294 Query: 297 FALNEPYYGNSASVKLLTPTQ--DSRDIINAATRSLDAIWQAGHRYQKAGVML------- 347 F + + ++++ + G + GV + Sbjct: 295 F----------KQTTIEHRSDEISVNLFYQLLEQAMERQHERG--IRLLGVSVGLASNSI 342 Query: 348 -GDFFSQGVAQLNL 360 + +Q++L Sbjct: 343 ASEQADVDSSQMDL 356 >UniRef50_UPI0001C34BBE DNA-directed DNA polymerase n=3 Tax=Neisseria subflava NJ9703 RepID=UPI0001C34BBE Length = 344 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 152/345 (44%), Positives = 213/345 (61%), Gaps = 5/345 (1%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60 MFAL D N+FY SCE VFRP+L P+VVLSNNDGCV+AR+ EAKALG+KMG+P+F+ K Sbjct: 1 MFALIDGNSFYCSCERVFRPELKNVPIVVLSNNDGCVVARSTEAKALGIKMGEPYFRVKH 60 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 L + + +SSNYELYAD+S R+M T+ P VE+YSIDE F D++G+ +LT+ G Sbjct: 61 LVSQGRLKAYSSNYELYADLSRRMMETIAGCVPAVEVYSIDECFADMSGI---ENLTELG 117 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDL--SNLERQRKLMSA 178 +IR VLQ + VGIA TKTLAK NH AK++ GVV N + + + + Sbjct: 118 CQIRQRVLQWVGIPTCVGIAPTKTLAKFCNHLAKRYPDHFRGVVVWGDWNETIRLRALRS 177 Query: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238 VD++WGIGRR + KL GI+T LD + D IR+ + V +ERT RE++G C L Sbjct: 178 QGVDEIWGIGRRTADKLSEQGIRTALDFVEADTATIRRRYGVTVERTQREMQGIVCDGLH 237 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 A +Q ++ SRSFG RI +++ A+ + + AE LR + +S F+ T F Sbjct: 238 PNAQPRQNLVRSRSFGTRIETLEALQAAVTHHVSLGAEALRKDGLTASAVSVFLHTDFFR 297 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKA 343 +EP Y NS + L+ T D+ + A R L I+++G+ Y+K Sbjct: 298 EDEPQYHNSLAQNLIVSTADTVHLNRIAQRLLADIYRSGYLYKKM 342 >UniRef50_C2HDM1 Possible DNA-directed DNA polymerase n=83 Tax=Firmicutes RepID=C2HDM1_ENTFC Length = 471 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 91/424 (21%), Positives = 167/424 (39%), Gaps = 24/424 (5%) Query: 2 FALCDVNAFYASCETVF-RPDLWGKPVVVLS--------NNDGCVIARNAEAKA-LGVKM 51 D +FYAS E V D +VV+S G ++A + AK G+ Sbjct: 30 ILCIDCKSFYASVECVEKDLDPLTTKLVVMSYPSDSTETRGSGLILASSPAAKKAYGITN 89 Query: 52 GDPWFKQKDLF-RRC-GVVCFSSNYELYADMSNRVMSTLEELSPRV--EIYSIDEAFCDL 107 + +DL + + Y + + + + ++ + +YS+DE+F D+ Sbjct: 90 ---ISRARDLPFPYPSDLYIVAPRMAYYMEKNREINTIYKKYADEANHHVYSVDESFLDV 146 Query: 108 TGVRNCR---DLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVV 164 T + D + I V ++T + +GI LAKLA K +Q + Sbjct: 147 TNSMALFGKTNAYDMAKLIHKDVFEQTGIYTTIGIGDNPLLAKLALDNGSKDGKQM--IA 204 Query: 165 DLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLER 224 + + KL + + D WGIG+R +K+L MGI +V DLA D ++ ++ + Sbjct: 205 EWRYEDVPEKLWTISDITDFWGIGKRTAKRLKQMGIHSVYDLAHADYYHLKSTLGIIGTQ 264 Query: 225 TVRELRGEPCLQL-EEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQ 283 G L +E+ P + I S+ T + I A + +LR Sbjct: 265 LYAHAWGIDRSFLGQEYIPKSRSIGNSQILDRDYTRQEEIEIVIKEMADQVGTRLRRSAA 324 Query: 284 YCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKA 343 + +S ++ S L+ + T SR++ +A ++ ++ Sbjct: 325 KAQVVSLWVGYSLGYLDPNGKTGFHQQTKIEATNASRNLADALLTIFHQHYR-CQDIRRI 383 Query: 344 GVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMK 403 GV + QLNLF++ + ++ V+DT+ K G ++ A +Q + Sbjct: 384 GVNCSNLVYATGLQLNLFENPEKQINEAKVDFVVDTIRKKYGFKSIIHAHSLLQGGRAIA 443 Query: 404 RAML 407 R+ L Sbjct: 444 RSSL 447 >UniRef50_A3EWL3 Polymerase ATREV1-1105 n=8 Tax=rosids RepID=A3EWL3_ARATH Length = 1105 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 133/371 (35%), Gaps = 27/371 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSN----NDGCVIARNAEAKALGVKMGDPWFK 57 D++ F+ S R +L KPV V + + + N A+A GVK G Sbjct: 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434 Query: 58 QKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLT 117 KDL + +V N+E Y +++++ L +V+ S DEAF D++ + + Sbjct: 435 AKDLCPQ--LVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVET-E 491 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 IR +L+ T + GI T +A+LA AK + + E+ + + Sbjct: 492 VLASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLY------ISAEKVEEFLD 545 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQ 236 LPV + G+G + +KL I+T L ++K F E RG Sbjct: 546 QLPVGTLPGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRS 605 Query: 237 LEEFAPTKQEIICSRSFGERITDYPS----MRQAICSYAARAAEKLRSEHQYCRFISTFI 292 + + I ++G R D ++ + + +L+ R + I Sbjct: 606 VTAVQ-ESKSIGAEVNWGVRFRDQQDVFILVQHFLQCLCKEVSLRLQGCEMIGRTFTLKI 664 Query: 293 KTS--------PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAG 344 K + S S+ + T D + + + + + G Sbjct: 665 KKRKKDAEEPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVG 724 Query: 345 VMLGDFFSQGV 355 + + S Sbjct: 725 LQVSKLDSADP 735 >UniRef50_C0ZB00 DNA polymerase IV n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB00_BREBN Length = 350 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 134/365 (36%), Gaps = 27/365 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 D++AF+AS E + RP+L GKPV+V N G V + EA+ GV+ P + Sbjct: 4 ILHLDIDAFFASVEQLDRPELRGKPVIVGGTGNRGVVSTCSYEARKYGVRSAMPVAMARK 63 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + Y Y + S V + R + +DEA+ D++ + Sbjct: 64 KCPQG--YYLPVRYSRYIEKSAEVRQIFTSYTERYQTVGLDEAYLDVSHY---ENAVPIA 118 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 R+I+ + + T LT +G++ +LAK+A+ K + E+ ++ LP Sbjct: 119 RDIKRRIKRETGLTCSIGLSYNMSLAKIASDLKKPDA------FVIIRPEQALDVLRPLP 172 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 + + G+G++ + L GI+TV D + F RGE ++ E Sbjct: 173 IGTLHGVGKKSQELLAKKGIETVEDFWRLSLDEATTLFGKFGRSLYYRARGEDNREI-EM 231 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + + + D ++ S E +R E + I+ IK + F Sbjct: 232 DRAPKSSSRETTLPFDLFDRDAIAPIATSLLREVEEDIREEGVEPQTITLKIKYADFTQR 291 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQG---VAQ 357 + A L + + GV +F Q Q Sbjct: 292 TKQHKAVAGAN-----------WQELLDDLLDAFDYTAGVRLVGVGFSNFAEQQGERYEQ 340 Query: 358 LNLFD 362 L++F Sbjct: 341 LSMFS 345 >UniRef50_D1JEL0 DNA polymerase IV n=1 Tax=uncultured archaeon RepID=D1JEL0_9ARCH Length = 363 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 146/371 (39%), Gaps = 30/371 (8%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNN-----------DGCVIARNAEAKALGV 49 + D+++F++S E +P L G PV+V G V + EA+ G+ Sbjct: 7 VILHVDMDSFFSSVEEREKPKLKGLPVIVGGKITPEWEKEDSKIRGVVSTCSYEARKYGI 66 Query: 50 KMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDL-T 108 K L N LY +S +M+ L + + ++E SIDEAF D+ T Sbjct: 67 HSAMALSKAYKLCPDAT--FLPVNMPLYKHVSGEIMNILRKYADKMEQVSIDEAFLDVST 124 Query: 109 GVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSN 168 V + D + + I+ + LT +GIA KT+AK+A+ K L+ Sbjct: 125 KVEDWNDAREHAKRIKKAIQVEEGLTCSIGIAPNKTIAKIASDFVKPDG--------LTV 176 Query: 169 LERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRE 228 +E + ++ L V ++ G+G + K L MGI + LA D++ + +R Sbjct: 177 VEEAKAFLAPLDVKNIPGVGPKTDKILRMMGIDQIGQLASGDVQKLVAAIGQSGKRLHLV 236 Query: 229 LRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFI 288 G ++EE ++ + R+F D + + + + A + + + Sbjct: 237 ANGIDKSEVEE-KWVRKSLSRERTFVNDTRDASVLTKCVDALAEEVYNAMTDAGFVFKTV 295 Query: 289 STFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQ-AGHRYQKAGVML 347 S +K F + + + L T D + A + + + + GV + Sbjct: 296 SIKVKFEDFTI------ATRAKTLKTYHCDLSTLKRTANELMTELNNAKSKKKRLIGVRI 349 Query: 348 GDFFSQGVAQL 358 + + Q+ Sbjct: 350 SNLGAVDEKQM 360 >UniRef50_Q2LSC9 Nucleotidyltransferase/DNA polymerase protein n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LSC9_SYNAS Length = 435 Score = 347 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 109/418 (26%), Positives = 177/418 (42%), Gaps = 19/418 (4%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKDL 61 D +AF+ SCE P+L GKP ++ G V + AK GV G P + + + Sbjct: 15 ILHIDGDAFFTSCEEAIHPELRGKP-IIAGGERGIVACASYAAKKQGVMRGVPLHQARKM 73 Query: 62 FRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDL--TDF 119 G+V S+YE Y+ S R+ + + +P+VE YSIDEAF D+TG+R Sbjct: 74 CP--GLVILPSDYETYSLFSRRMFNVMRRFTPQVEEYSIDEAFADITGMRRPLRASYETI 131 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 I+ + + +TV VG++ TK LAK+A+ K + + L Sbjct: 132 AVNIKNEIARELGITVSVGLSITKVLAKVASKHRKPNG------FTCIPGKSIAIYLEHL 185 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL-E 238 PV+ +WGIG + L MG++T L+ A ++K F RELRG+ + Sbjct: 186 PVEKIWGIGHATASYLHKMGVRTALEFARLPEVLVKKRFTKPGVEIWRELRGDSVYPVCA 245 Query: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298 E I +++F D + + A K R H I+ F+K + F+ Sbjct: 246 EEKSLYASISKTKTFSPASGDADYLFAHLMRNLESACIKARRYHLAASRIAAFLKRNDFS 305 Query: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358 ++L P+ ++ A +++ G Y+ G++L + Q Sbjct: 306 YAG------REIRLNRPSVYPLELSIALRNLFIDVYRPGTLYRSTGIVLLELSGDSGTQY 359 Query: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQ-GIQQQWQMKRAMLSPRYTTRS 415 LFDD + V D + AK G+ +L+ I+ + KR + R TR Sbjct: 360 TLFDDVVRADRVRDIYRVTDEVGAKYGKHSLHLGASHFIELLGRGKRGEPTARERTRF 417 >UniRef50_Q2L7B2 REV1 n=7 Tax=Sordariomycetes RepID=Q2L7B2_NEUCR Length = 1343 Score = 347 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 140/415 (33%), Gaps = 46/415 (11%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNND--GCVIARNAEAKALGVKMGDPWFKQK 59 D ++F+ + P+ KP VV N + + N A+ GVK G Sbjct: 368 IMHVDFDSFFCAVSLKKAPEYRDKPAVVAHGNGKGSEIASCNYPARKFGVKNGMWMKHAL 427 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV--------- 110 +L + ++ Y + S + + + V+ SIDEA D+T + Sbjct: 428 ELCP--DLKILPYDFPGYEEASRQFYDAILGIGGVVQSVSIDEALIDVTDIVMAEAGSSG 485 Query: 111 ---------RNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG 161 R + ++R + ++T V VGI LAK+A AK + Sbjct: 486 IGISEGSIWREQEKVDQMASKLRDRIKEQTDCHVSVGIGANILLAKVALRKAKPAGQYQ- 544 Query: 162 GVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-V 220 E L+ L V+D+ G+ I KL+ +GIK V D+ T + Sbjct: 545 -----IKPEEALDLLGELNVEDLPGVAHSIGAKLEELGIKFVKDIRQTSKERLISALGPK 599 Query: 221 VLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS 280 E+ RG ++ E P ++ + ++G R + + + S + +L S Sbjct: 600 TGEKLWEYSRGIDRTEVGEQ-PIRKSVSAEVNWGIRFVNQEEAEEFVRSLSQELERRLLS 658 Query: 281 EHQYCRFISTFIKTS---------PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 E + ++ I + + SV T I A L Sbjct: 659 EGVKGKHLTMKIMRRAADAPLDPPKHLGHGKCDTFNKSVSFGVGTNSGEVIGKEAVAILR 718 Query: 332 AIWQAGHRYQKAGVMLGDFFS------QGVAQLNL-FDDNAPRPGSEQLMTVMDT 379 + + + G+ + Q +Q L F A ++ +D Sbjct: 719 SYKFSPGDLRGLGIQMTKLEPLKPSAAQQGSQKKLSFGAAATSSAKKRKAEAIDD 773 >UniRef50_D2A3T9 Putative uncharacterized protein GLEAN_14950 n=1 Tax=Tribolium castaneum RepID=D2A3T9_TRICA Length = 825 Score = 347 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 71/455 (15%), Positives = 147/455 (32%), Gaps = 60/455 (13%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNND-------------------------- 34 + D++ F+ S RP+L G PV V Sbjct: 209 VVMHIDMDCFFVSVGLRTRPELRGLPVAVTHARRAQLNPNKEREETVTLNMDRMPEGVEL 268 Query: 35 ---------GCVIARNAEAKALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVM 85 V + + EA+ GVK G L + + ++E Y ++S + Sbjct: 269 RMIDGRSSMSEVASCSYEARKCGVKNGMFLGAAAKLCPQIKTI--PYDFEGYKEVSMVLY 326 Query: 86 STLEELSPRVEIYSIDEAFCDLTGVRNCRDL--TDFGREIRATVLQRTHLTVGVGIAQTK 143 TL + +E S DE + +++ + DL D+ IR + T G + Sbjct: 327 KTLASYTLNIEAVSCDEMYVEVSDLLKSYDLSVEDWANHIRDEIKTATGCPCSTGFGSNR 386 Query: 144 TLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTV 203 A+LA AK E ++ + + D+ G+G KL ++G++T Sbjct: 387 LQARLATKKAKPDGSYYL------KPEDVESYLAEIALADLPGVGYATLSKLKSLGLETC 440 Query: 204 LDLADTDIRFIRKHFN-VVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPS 262 D+ + +++ + E + + +G L + ++ + ++G R Sbjct: 441 GDVQVASLGVLQRELGAKMGETLLEQAKGIDRKPL-NYTHERKSVSAEINYGIRFKTINE 499 Query: 263 MRQAICSYAARAAEKLRSEHQYCRFISTFIK---------TSPFALNEPYYGNSASVKLL 313 + S +L + ++ + T+ F + S S L Sbjct: 500 CYNFLESLGNEVWSRLNEIKMRAKTVTLKLMIRAADAPLETAKFLGHGLCDSVSKSQTLA 559 Query: 314 TPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQL 373 D + + D + + GV L L N + S+++ Sbjct: 560 HHISDVKILHREVRTLYDKMNVNYAELRGLGVQLTKLEKLAPINPTL--SNFLQQESKKI 617 Query: 374 MTVMDTLNAKEGRGTLYFAG-QGIQQQWQMKRAML 407 D ++ GR + + + + + ++ Sbjct: 618 QPTGDKTASR-GRELVRPPSGEKVATRGRPRKNSK 651 >UniRef50_B5JKI6 ImpB/MucB/SamB family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKI6_9BACT Length = 361 Score = 346 bits (889), Expect = 9e-94, Method: Composition-based stats. Identities = 72/362 (19%), Positives = 135/362 (37%), Gaps = 27/362 (7%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS--NNDGCVIARNAEAKALGVKMGDPWFKQK 59 D++ FYA+ E P+L G+PV V + G + N EA+A G+ P ++ Sbjct: 14 IIHIDMDCFYAAIEVRDHPELRGEPVAVGGRSSRRGVLTTCNYEARAFGIHSAMPTYQAM 73 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDF 119 ++ +E+Y + S R+ + + + +E S+DEA+ D++ + + Sbjct: 74 QRCPH--LIIKPVRFEVYKNESRRIRAIFADYTSAIEPLSLDEAYLDVSHLDRP--ASAI 129 Query: 120 GREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSAL 179 EIR + Q T L GIA K LAK+A+ K + ++ M L Sbjct: 130 ALEIRKRIRQTTGLNASAGIAPNKMLAKIASDWRKPNGQYE------ITPDQIADFMREL 183 Query: 180 PVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEE 239 PV +WG+G++ + +L ++ I T DL ++KHF RG + Sbjct: 184 PVSKIWGVGKKSAARLASLDIATCGDLQQKTRLELQKHFGKFGSELYELSRGIDHRDVVS 243 Query: 240 FAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLR--SEHQYCRFISTFIKTSPF 297 ++ + C R++ + +Q + L + + K S F Sbjct: 244 NR-IRKSMSCERTYATDLHSLDDRQQHAADIFQELSADLARFKSDRPIHKLFVKCKYSDF 302 Query: 298 ALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQ 357 S L +D+ ++ + + G+ + F Sbjct: 303 T----RTSIERSG-LPFTLASFQDL------LAESYHRRSDPIRLLGLGV-RFTDPETQT 350 Query: 358 LN 359 + Sbjct: 351 RS 352 >UniRef50_C5JS23 DNA damage repair protein Mus42 n=2 Tax=Ajellomyces dermatitidis RepID=C5JS23_AJEDS Length = 1171 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 135/428 (31%), Gaps = 52/428 (12%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNN--DGCVIARNAEAKALGVKMGDPWFKQK 59 D ++F+A+ P+L +PV + + + N A++ G+K G Sbjct: 372 ILHVDFDSFFAAVSIRKHPELVDQPVAIAHGTGPGSEIASCNYPARSFGIKNGMWMKAAL 431 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGV--------- 110 + + ++ Y S + + V+ SIDEA D+TGV Sbjct: 432 QMCP--NLKVLPYDFAAYEQASRAFYEVILSIDGIVQSVSIDEALVDITGVCLDAGGSDG 489 Query: 111 ---------RNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG 161 R + + +R +V +RT + VGI A++A AK + Sbjct: 490 RGISEGSIWREQEKADEIAQNLRNSVKERTGCNISVGIGGNVLQARVALRKAKPAGQFQL 549 Query: 162 GVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-V 220 + + L V D+ G+ + KL+ +G+ V D+ D + Sbjct: 550 ------KPDAVLDFIGTLAVKDLPGVAHSLGAKLEELGVTFVKDIRDLSREKLTSSLGPK 603 Query: 221 VLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS 280 + RG ++ ++ + ++G R + + + S +L Sbjct: 604 TGAKLWDFARGIDNTEVG-VQAPRKSVSAEINWGIRFVNQAQAEEFVQSLCDELHRRLVE 662 Query: 281 EHQYCRFISTFIKTS---------PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 + ++ I + + SV L T S I A L Sbjct: 663 NLVKGKQLTMRIMKRSADAPLEPVKHLGHGKCDTFNKSVNLGVATNASDIIGREAITILR 722 Query: 332 AIWQAGHRYQKAGVMLGDFFS----------QGVAQLNLFDDNAPRPGSEQLMTVMDTLN 381 + + GV + Q++ + R + D +N Sbjct: 723 GFKFSPGDLRGLGVQMTKLEPVKQNHARELDSSQKQISFKPASPTRQRETPIDP--DEIN 780 Query: 382 A-KEGRGT 388 ++G T Sbjct: 781 TPRKGDTT 788 >UniRef50_C2KZY4 DNA polymerase IV n=2 Tax=Clostridiales RepID=C2KZY4_9FIRM Length = 418 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 88/367 (23%), Positives = 148/367 (40%), Gaps = 21/367 (5%) Query: 1 MFALCDVNAFYASCETVFRPDLWGKPVVVL--SNNDGCVIARNAEAKALGVKMGDPWFKQ 58 + D++AFYAS E P L KP+++ G V N EA+ GV+ + Sbjct: 14 IILHVDMDAFYASVEMRDNPTLKDKPLIIGAKPTERGVVATCNYEARKYGVRSAMNSKEA 73 Query: 59 KDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG-VRNCRDLT 117 L + V ++E Y +S + LE + +VE ++DE + DLT ++ + Sbjct: 74 FRLCPKA--VFLYPDFEKYKAVSEELHEILESYTKQVEYIALDEGYLDLTEVAKDFSEAE 131 Query: 118 DFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMS 177 GREI+ V + LT VGIA KT AK A+ K G + E +L+ Sbjct: 132 KIGREIQRRVAEELRLTCSVGIAYGKTAAKTASEEKKPN-----GFFMIQRREDYVELLR 186 Query: 178 ALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQL 237 V ++ +G + +++L + GI TV DL + + +R + + G ++ Sbjct: 187 DRDVRALFTVGAKTAERLYSFGIYTVKDLQEKEKEVLR-LLGNQGKMLLELSYGIDHRKV 245 Query: 238 EEFAPT-KQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSP 296 + P Q I +F E +TDY + + + R + + Y R +S I + Sbjct: 246 VPYRPEDTQSISKEMTFQEDVTDYSFLDDVLFLLSFRVENRAKRYGLYARGVSLKITFAD 305 Query: 297 FALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVA 356 + S + TQ + + A+ L I R + G Sbjct: 306 MK------TITRSALISESTQSAFSLYKNASALLQQI--PRRRVRLIGEGFYHLEENEGR 357 Query: 357 QLNLFDD 363 QL+ F D Sbjct: 358 QLS-FSD 363 >UniRef50_C8V695 Deoxycytidyl transferase (Eurofung) n=2 Tax=Emericella nidulans RepID=C8V695_EMENI Length = 1139 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 73/437 (16%), Positives = 141/437 (32%), Gaps = 52/437 (11%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGC--VIARNAEAKALGVKMGDPWFKQK 59 D + F+A+ T+ P+L GKPV + + + N A+A GVK G Sbjct: 342 IMHVDFDCFFAAVSTLKHPELEGKPVAIAHGTGTGSEIASCNYVARASGVKNGMWMKGAL 401 Query: 60 DLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTG---------- 109 + ++ Y + S + + + V+ SIDEA D+T Sbjct: 402 QACP--DLRVLPYDFPAYEEASRKFYRAILGIDGLVQSVSIDEALVDITTICLEAGGSEG 459 Query: 110 --------VRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTG 161 R + ++RA + + T V VGI AK+A AK + Sbjct: 460 KGVSEGSIYREQAKADEVAEQLRAAIKRETGCAVSVGIGGNILQAKVALRKAKPAGQFQL 519 Query: 162 GVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFN-V 220 + + LPV ++ G+G +S KL+ +G+K V D+ D + Sbjct: 520 ------KPDAVLDFIGELPVQNLPGVGYSLSAKLEDLGVKIVKDIRDLSREKLSSSLGPK 573 Query: 221 VLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRS 280 + RG ++ ++ + ++G R + S +L Sbjct: 574 TGAKLADYARGIDRTEVGNEVT-RKSVSAEVNWGIRFVTQDQAEDFMRSLCEELHRRLVE 632 Query: 281 EHQYCRFISTFIKTS---------PFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLD 331 + ++ + + + SV L T + + A L Sbjct: 633 NLMKGQQLTLKVMRRALDAPLEAVKHLGHGKCDVFNKSVILGIATNAADVLGKEAIAMLR 692 Query: 332 AIWQAGHRYQKAGVMLGDFFS--------QGVAQLNLFDDNAPRPGSEQLM--TVMDTLN 381 ++ + + GV + G Q F + ++ + ++D+ Sbjct: 693 SLAISPGDLRGLGVQMTKLEPLKSTSEKSDGSQQQLAFKASTAPKRAQPIDDPDLLDSPR 752 Query: 382 AKEGRG-TLYFAGQGIQ 397 G ++ Q Sbjct: 753 K--GESESIRHGPQLND 767 >UniRef50_B0S0R3 DNA polymerase IV n=4 Tax=Clostridiales RepID=B0S0R3_FINM2 Length = 347 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 86/361 (23%), Positives = 155/361 (42%), Gaps = 19/361 (5%) Query: 2 FALCDVNAFYASCETVFRPDLWGKPVVVLS-NNDGCVIARNAEAKALGVKMGDPWFKQKD 60 F D++AF+ASCE + P L P+VV + G + N EA+ G+ P F+ K Sbjct: 5 FLHFDLDAFFASCEILDNPKLKHVPMVVGGRSQRGIITTANYEARKYGLHSAMPIFQAKK 64 Query: 61 LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120 + +V + ++E Y S +V L S +++ SIDE D++ +R D + Sbjct: 65 IVP--NLVIVAPDFEKYRRNSEKVFKVLSSFSNKIQKMSIDEGCMDISHIR--MDRLELA 120 Query: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLSNLERQRKLMSALP 180 I+ V +T L++ +GI+ +LAKLA+ K + + + ++ L Sbjct: 121 NLIQENVRIKTGLSISIGISYNMSLAKLASDWNKPHGIK------IITQDDIPNILLDLK 174 Query: 181 VDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEF 240 V + GIGR+ +KL+ +GIK V DL D +R+ F E +RG QL + Sbjct: 175 VGKIQGIGRKSEEKLNKIGIKKVSDLYDLSRNNLRELFGKFGEVIYDRIRGIDERQL-DL 233 Query: 241 APTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN 300 + ++ I +F + +Y + ++ ++ L ++ + I IK + F++ Sbjct: 234 SRIRKSIGVEYTFERDLKNYNELLNKASEFSEELSDDLHKKNIKAKTIRIKIKLNDFSV- 292 Query: 301 EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQLNL 360 + S+ L DS DI + + + G+ + QL Sbjct: 293 -----ITKSMTLEEYISDSSDIFRIVKYLV-VNTKIEKSVRLFGITAANLSDTTFEQLKF 346 Query: 361 F 361 Sbjct: 347 L 347 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.174 0.521 Lambda K H 0.267 0.0533 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,801,205,733 Number of Sequences: 3077464 Number of extensions: 127461013 Number of successful extensions: 370312 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1686 Number of HSP's successfully gapped in prelim test: 732 Number of HSP's that attempted gapping in prelim test: 359729 Number of HSP's gapped (non-prelim): 2976 length of query: 422 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 291 effective length of database: 637,248,572 effective search space: 185439334452 effective search space used: 185439334452 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 95 (40.8 bits)