200 c1pjaA_ Probab=99.33   E-value=5.8e-11  Score=74.27  Aligned_columns=201  Identities=10%

Q ss_pred             CCEEEEECCCCCCHHHHHHHCCHHHHHHHC--CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             508999777899888988631689999866--976993156501353056432355555420136764333343318999
Q batch____        43 PPVLYWLSGLTCNDENFTTKAGAQRVAAEL--GIVLVMPDTSPRGEKVANDDGYDLGQGAGFYLNATQPPWATHYRMYDY  120 (278)
Q Consensus        43 ~Plli~lhG~~~~~~~~~~~~~~~~~~~~~--g~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  120 (278)
                      +|-|+++||.+++...|....   +.+++.  ++.|+.+|.++.|.....                       .....+.
T Consensus         2 ~~PvvllHG~~~~~~~w~~~~---~~l~~~~~~~~v~~~D~~G~G~S~~~-----------------------~~~~~~~   55 (268)
T c1pjaA_           2 YKPVIVVHGLFDSSYSFRHLL---EYINETHPGTVVTVLDLFDGRESLRP-----------------------LWEQVQG   55 (268)
T ss_dssp             CCCEEEECCTTCCGGGGHHHH---HHHHHHSTTCCEEECCSSCSGGGGSC-----------------------HHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHH---HHHHHHCCCEEEEEECCCCCCCCCCC-----------------------HHCCHHH
T ss_conf             877899987999888899999---99997189829998168889999998-----------------------0105999


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCC
Q ss_conf             99999999982098768779999866789999999859340017774165545333701223321035773345551152
Q batch____       121 LRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPGKYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDS  200 (278)
Q Consensus       121 l~~el~p~i~~~~~d~~~~~i~G~S~GG~~al~~a~~~Pd~f~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (278)
                      +.+.+....+...   .++.+.|+||||..|+.++.++|+...+.+...+..............................
T Consensus        56 ~~~~~~~~~~~~~---~~~~lvGhS~GG~ia~~~a~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (268)
T c1pjaA_          56 FREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICY  132 (268)
T ss_dssp             HHHHHHHHHHHCT---TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCC---CCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9998753200036---8717996090599999999987884353599943876675444034431000358888643200


Q ss_pred             CCHHHHHCCC---------------------------------------------------------CCCEEEEEECCCC
Q ss_conf             2757640111---------------------------------------------------------7976999832877
Q batch____       201 CALMYASNAQ---------------------------------------------------------DAIPTLIDQGDND  223 (278)
Q Consensus       201 ~~~~~~~~~~---------------------------------------------------------~~~~~~i~~G~~D  223 (278)
                      ..........                                                         ...+.+...+..|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (268)
T c1pjaA_         133 SPWGQEFSICNYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFYDANE  212 (268)
T ss_dssp             STTGGGSTGGGGBCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCSEEEEEECTTCSSSSSGGGGGTCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             13454222778741010056776422227887543542212235776762364021003667510323150322026776


Q ss_pred             CCCCHHHHHHHHHH------HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             75561488999999------999789978999976899978679998999999999984
Q batch____       224 QFLADQLQPAVLAE------AARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL  276 (278)
Q Consensus       224 ~~v~~~~~~~~l~~------al~~~g~~~~~~~~~G~~H~~~~~~~~i~~~~~f~~~~l  276 (278)
                      ..++.. ....+.+      .+.+.+ .+++.++||++|....-+.  +..-+..+++|
T Consensus       213 ~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~v~g~gH~~~~~~p--~~~~~~i~~fL  267 (268)
T c1pjaA_         213 TVLEME-EQLVYLRDSFGLKTLLARG-AIVRCPMAGISHTAWHSNR--TLYETCIEPWL  267 (268)
T ss_dssp             CEECGG-GSHHHHTTTTSHHHHHHTT-CEEEEECSSCCTTTTTSCH--HHHHHHTGGGC
T ss_pred             EEECHH-HHHHHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCH--HHHHHHHHHHC
T ss_conf             052565-7145466589899995149-8099997748847002358--99999977643