BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (176 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q83J60 HTH-type transcriptional regulator dctR n=59 Tax... 355 4e-97 UniRef50_B7LQG5 Putative HTH-type transcriptional regulator dctR... 235 4e-61 UniRef50_P63206 Transcriptional regulator gadE n=61 Tax=Enteroba... 67 3e-10 UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 45 8e-04 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 45 9e-04 UniRef50_C7PCU2 Two component transcriptional regulator, LuxR fa... 45 9e-04 UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opit... 45 0.001 UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR fa... 44 0.002 UniRef50_B2VL70 Putative uncharacterized protein n=1 Tax=Erwinia... 44 0.002 UniRef50_B1ZN14 Two component transcriptional regulator, LuxR fa... 44 0.003 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 43 0.004 UniRef50_A6E779 Response regulator n=1 Tax=Pedobacter sp. BAL39 ... 43 0.004 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 43 0.004 UniRef50_A8UHM3 Two-component response regulator n=1 Tax=Flavoba... 43 0.006 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 42 0.006 UniRef50_A9BWP2 Two component transcriptional regulator, LuxR fa... 42 0.007 UniRef50_C7LQH4 Two component transcriptional regulator, LuxR fa... 42 0.007 UniRef50_Q21X49 Two component transcriptional regulator, LuxR fa... 42 0.009 UniRef50_B2KBW2 Two component transcriptional regulator, LuxR fa... 42 0.009 UniRef50_C7PDL7 Two component transcriptional regulator, LuxR fa... 42 0.012 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 42 0.013 UniRef50_B0TSG4 Two component transcriptional regulator, LuxR fa... 42 0.013 UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 41 0.013 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 41 0.020 UniRef50_Q1LLE4 Two component transcriptional regulator, LuxR fa... 41 0.021 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 40 0.025 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 40 0.034 UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n... 40 0.042 UniRef50_Q31FU6 Two component transcriptional regulator, LuxR fa... 40 0.045 UniRef50_Q39TN7 Two component transcriptional regulator, LuxR fa... 40 0.049 UniRef50_UPI0001969032 hypothetical protein BACCELL_01743 n=1 Ta... 39 0.051 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 39 0.052 UniRef50_Q2JYB4 Probable two-component response regulator protei... 39 0.058 UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=M... 39 0.068 UniRef50_A5G586 Two component transcriptional regulator, LuxR fa... 39 0.092 >UniRef50_Q83J60 HTH-type transcriptional regulator dctR n=59 Tax=Enterobacteriaceae RepID=DCTR_SHIFL Length = 176 Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 174/176 (98%), Positives = 175/176 (99%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ Sbjct: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 IERLKPVHVI+FSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEA VSLSRKQ Sbjct: 61 IERLKPVHVIVFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEANVSLSRKQ 120 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV Sbjct: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 >UniRef50_B7LQG5 Putative HTH-type transcriptional regulator dctR, Probable repressor of dctA dicarboxylate transporter gene n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQG5_ESCF3 Length = 187 Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 108/176 (61%), Positives = 144/176 (81%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 MFL+IT+DT+ F A+ +L+K VVH+Q+E++ID++LHQ+ +IIDTLMNNVFHS + Sbjct: 12 MFLVITKDTVLFNAITFLLNKSQVVHVQDEDDIDLVLHQHCHIIIDTLMNNVFHSAMAEK 71 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 I++L+P VI+FSPF IKRCLG +PVTFV R I++IDF+ L+N C PEA + LSRKQ Sbjct: 72 IKQLRPEQVIVFSPFIIKRCLGDIPVTFVLRNISLIDFMVLVNRGLCPAPEADIMLSRKQ 131 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HQVLS IA QM TEDIL+K++ISLKTFYCHKH++MMILNL+RI EL+++ H+ YL+ Sbjct: 132 HQVLSYIAQQMQTEDILQKMQISLKTFYCHKHSVMMILNLRRITELIKYPHVSYLI 187 >UniRef50_P63206 Transcriptional regulator gadE n=61 Tax=Enterobacteriaceae RepID=GADE_ECO57 Length = 175 Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 80/167 (47%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 M ++T+D+ + ++ I + EI + ++ VIIDT N++ + Sbjct: 1 MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHNHILDEEAIKF 60 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 +E+L +I+ +P++I + K P+ FV R +I + + + G + + + S Q Sbjct: 61 LEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEITYGKHLPHKNSQLCFSHNQ 120 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 +++ I +I L IS +T K NIM L L+R++++V Sbjct: 121 FKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIV 167 >UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLG5_9BACT Length = 225 Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 110 PEAAVS---LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 P+AA S LS ++ Q+L +A +T++I +L IS++T H+ NIM LNL + L Sbjct: 153 PDAASSEIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNIMRKLNLHDVAAL 212 Query: 167 VRH 169 R+ Sbjct: 213 TRY 215 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS+++ ++L IA +DI EKL +S+KT HK +IM LNLK ELV + Sbjct: 156 LSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 >UniRef50_C7PCU2 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PCU2_CHIPD Length = 220 Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%) Query: 108 SVP----EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 SVP EA LS+ + +V+ IA M+T++I + L IS+KT H+HNI LNL Sbjct: 142 SVPAIPQEAHHKLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKLNLTGH 201 Query: 164 NELVRH 169 N L+++ Sbjct: 202 NSLIKY 207 >UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A9E4_9BACT Length = 227 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 P A +LS ++ VL I+ ++ ++I +L IS KT H+ IM LN+ + ELVR Sbjct: 137 PACAATLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHRSRIMQKLNVTKATELVRE 196 >UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNU7_THASP Length = 220 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 94 TIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 T+ D + G Y + P L+ ++ QVL IA +T+ I ++L I+ T H+ N Sbjct: 133 TVADALRDSPGVYAAAPR----LTARERQVLQLIAEGLTSVQIGDRLHIAASTVEVHRRN 188 Query: 154 IMMILNLKRINELVRH 169 +M L+L + EL R+ Sbjct: 189 LMRKLDLHNVAELTRY 204 >UniRef50_B2VL70 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VL70_ERWT9 Length = 200 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 112 AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 A + L+R + +V+SC+A +M+ + + LKIS KT HK ++M L KR EL Sbjct: 129 ALLKLTRSEVRVISCMAQEMSPVSLPQYLKISPKTISAHKRSVMRKLGFKRNEEL 183 >UniRef50_B1ZN14 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B1ZN14_OPITP Length = 215 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 25/153 (16%) Query: 42 FVIIDTLMNNVFHSNFLTQI-ERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITII 96 +++D + + + L +I ++L + V++FS P I+ L FV +T + Sbjct: 50 LLVLDAKLPGLNGVDLLRRISKKLSGMRVLVFSGHENPVLIREMLEAGAHGFVEKTAGLF 109 Query: 97 DFVALI-----NGSYCSVPEAAVS---------------LSRKQHQVLSCIANQMTTEDI 136 +F + G+Y AA+ L+ ++ ++L +A +T++I Sbjct: 110 EFKKGLETVASGGTYFGPAVAALLRNVVANPSASNTADFLTDREREILQLVAESHSTKEI 169 Query: 137 LEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 KL IS+KT H+ N+M LNL + L R+ Sbjct: 170 AAKLGISIKTVDNHRTNLMRKLNLHDVASLTRY 202 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%) Query: 101 LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNL 160 L G E LS K+ ++L + + M++ +I EKL++S++T H+ N+M L + Sbjct: 143 LKKGDRHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQV 202 Query: 161 KRINELVRHQHIDYLV 176 + ELVR D L+ Sbjct: 203 RNAAELVRMAVEDKLI 218 >UniRef50_A6E779 Response regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E779_9SPHI Length = 220 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 42/68 (61%) Query: 100 ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILN 159 +L+N + +AA SL++++ ++L I ++ TT +I E L ISL+T H++N+++ Sbjct: 140 SLLNKNNVKGFDAASSLTQREKEILRLICDECTTAEIAEALSISLRTVDGHRNNLLVKTG 199 Query: 160 LKRINELV 167 K + LV Sbjct: 200 AKNVAGLV 207 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 VSL+ ++ +VL IAN +TT + E L IS T H+ N+M LN+ ELVR Sbjct: 145 VSLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRANLMQKLNVHNQVELVR 199 >UniRef50_A8UHM3 Two-component response regulator n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UHM3_9FLAO Length = 217 Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%) Query: 108 SVPEAA----VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 S P+A + L+R++H+VL I+ ++TT+ I EKL IS KT H+ NI++ K Sbjct: 145 SKPKAKNGLNIKLTRREHEVLIAISEELTTQQISEKLFISPKTVETHRSNIILKFGAK 202 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 25/158 (15%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQIE-RLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTI 93 Q +++D +M + + ++ R + ++I + F + + + V++V +T+ Sbjct: 62 QPDIILMDLMMPGMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTV 121 Query: 94 TIIDFVALINGSYCSVP----EAAVSLSR----------------KQHQVLSCIANQMTT 133 + + + + G+Y +P E A +L+R ++ +VL IA + Sbjct: 122 SAEELIYALQGAYRGMPVMTGEVAQALTRGLRQRTVQGDDSGMTEREKEVLLLIAEGKSN 181 Query: 134 EDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQH 171 +DI E+L IS+KT H N++M L+ +L + H Sbjct: 182 KDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAH 219 >UniRef50_A9BWP2 Two component transcriptional regulator, LuxR family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BWP2_DELAS Length = 218 Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 39/69 (56%) Query: 101 LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNL 160 L+ G + ++ LS+++ +VL + MT +I +KL S+KT HK +M L + Sbjct: 139 LLGGEWLGAVRTSIELSKREEEVLLLFISGMTVSEIAKKLYRSIKTVSTHKVAVMNKLGI 198 Query: 161 KRINELVRH 169 ++ +L+R+ Sbjct: 199 RKDIDLIRY 207 >UniRef50_C7LQH4 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQH4_DESBD Length = 222 Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SLS ++ QV+ +A +T E+I KL +S KT H++ IM L +K VRH Sbjct: 157 SLSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLNHRYAIMTKLGIKSPVAFVRH 211 >UniRef50_Q21X49 Two component transcriptional regulator, LuxR family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21X49_RHOFD Length = 487 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%) Query: 100 ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILN 159 AL+ + + +S +Q QVL +A T+ I EKL+IS T H+ ++M L+ Sbjct: 409 ALVERERSGELDRSARISARQRQVLELVAMGCTSAQIAEKLQISPATVVTHRRDLMGKLD 468 Query: 160 LKRINELVRH 169 L + EL R+ Sbjct: 469 LHTVAELTRY 478 >UniRef50_B2KBW2 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBW2_ELUMP Length = 215 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 36/55 (65%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ K+ Q+L IA ++++I ++ +SL T + H++NIM L++ + ELVR+ Sbjct: 152 GLTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRY 206 >UniRef50_C7PDL7 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDL7_CHIPD Length = 210 Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS ++ +++ C+A M T+ I L IS T H+ NIM LN+K EL+R Sbjct: 150 LSEREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNVKTSAELIR 202 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 110 PEAAVS-LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 PE V+ L+ ++ ++L IA+ T I + L IS+KT H+ N+M LNL ELVR Sbjct: 136 PEPPVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGKLNLHSTAELVR 195 Query: 169 HQ 170 + Sbjct: 196 YS 197 >UniRef50_B0TSG4 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=B0TSG4_SHEHH Length = 222 Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L+ +Q Q+L IA +T +I E++ +S+KT H+ +IM LN+ I LVR Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVR 206 >UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQZ3_9BACT Length = 222 Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS ++ +VL +A +T+ I E L++S+KT H+ N+M L+ + EL R Sbjct: 147 LSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLMKKLDARSAVELTR 199 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 V + A LS ++ +VL A T ++I ++L +S KT ++H +M L R +EL Sbjct: 147 GEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSEL 206 Query: 167 VR 168 VR Sbjct: 207 VR 208 >UniRef50_Q1LLE4 Two component transcriptional regulator, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LLE4_RALME Length = 213 Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHI 172 +L+ K+ +VL C + MT +I K S KT HK + + L ++ NEL + +H+ Sbjct: 154 AALTEKEREVLRCFLDGMTVNEIAAKFSRSKKTVSGHKQSALRKLGIRSDNELFKVRHL 212 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 89 VPRTIT--IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 V +T T +ID+ N S E LS ++ +VL IA T ++I EKL IS+KT Sbjct: 125 VDKTFTKLLIDYYR--NPDKQSGTEKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKT 182 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H I L L R +ELVR+ Sbjct: 183 VETHIARIKEKLGLNRRSELVRY 205 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS ++ +VLS IA +I E+L IS+KT +K+ IM LN K+ ++LV+ Sbjct: 152 LSDQEKKVLSLIAAGYANREIAEQLVISVKTVETYKYRIMEKLNCKKRSDLVK 204 >UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HUJ9_9SPHI Length = 269 Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 VSL++K+ Q++ I + M +++I + L IS T H+ NI+ L K + E+V+ Sbjct: 203 TVSLTKKEKQIVKMILDGMKSKEIGQVLNISFNTVSTHRKNILRKLGAKNLGEMVK 258 >UniRef50_Q31FU6 Two component transcriptional regulator, LuxR family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FU6_THICR Length = 232 Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 103 NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 +G S P+ LS ++ QV+ +A T+DI + L+IS +T H+ NIM L + Sbjct: 154 SGDKPSRPK---KLSVREKQVIKLVAEGYKTKDIADMLEISDRTVSKHRENIMTKLGMTA 210 Query: 163 INELVRH-QHIDYL 175 ELV + HI L Sbjct: 211 SAELVNYASHIGLL 224 >UniRef50_Q39TN7 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TN7_GEOMG Length = 210 Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 SLS +++QV+S IA+ T I +L +S+KT ++ +I+ LN+K EL R Sbjct: 149 SLSNREYQVMSMIASGKTVGKIATELSLSVKTVSTYRAHILRKLNMKNNAELTR 202 >UniRef50_UPI0001969032 hypothetical protein BACCELL_01743 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969032 Length = 215 Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 PE LS+++ +VL CI+ + + +I KL IS+ T H+ IM+ L K ++++ Sbjct: 147 PEMPQVLSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASDML 204 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 34/53 (64%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS+++ ++L IA ++I E+L IS KT HK +IM L +K+ ++L+R Sbjct: 152 LSKREKEILPLIALGYGNKEIAERLFISAKTVEVHKSHIMKKLEMKKFSDLLR 204 >UniRef50_Q2JYB4 Probable two-component response regulator protein n=1 Tax=Rhizobium etli CFN 42 RepID=Q2JYB4_RHIEC Length = 217 Score = 39.3 bits (90), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 14/95 (14%) Query: 83 KVPVTFVPRTITIIDFVALINGSYCSVPEAAVS----------LSRKQHQVLSCIANQMT 132 + PVTF+PR + V LI S EA +S LS ++ QV+ + + Sbjct: 113 RYPVTFLPRPFGTDNLVQLIRSSV----EATISISQLDCRYQSLSARERQVMQFVVEGLL 168 Query: 133 TEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + + KL IS+ T H+ +M + + + ELV Sbjct: 169 NKQVAYKLNISVITVKAHRGQVMRKMRARSLPELV 203 >UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFU2_9SPHI Length = 219 Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 98 FVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 + I S + P V L++++ +VL+ I MTT++I ++L I+ T H+ N++ Sbjct: 140 LIKSIQESKKAKPNPQVKLTKREKEVLALIGKGMTTKEISKQLFIADTTVETHRRNLIDK 199 Query: 158 LNLKRINELV 167 L +K EL+ Sbjct: 200 LEVKNSKELI 209 >UniRef50_A5G586 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=A5G586_GEOUR Length = 226 Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 39/66 (59%) Query: 104 GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 G+ + ++ V LS+++ +VL IAN +T++I +S+KT + ++M LNL + Sbjct: 151 GADANSSDSCVQLSKREREVLQLIANGNSTKEIAFTFGVSIKTVAVQRMSVMKKLNLFNV 210 Query: 164 NELVRH 169 +L ++ Sbjct: 211 ADLTKY 216 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q83J60 HTH-type transcriptional regulator dctR n=59 Tax... 234 1e-60 UniRef50_B7LQG5 Putative HTH-type transcriptional regulator dctR... 219 5e-56 UniRef50_P63206 Transcriptional regulator gadE n=61 Tax=Enteroba... 194 1e-48 UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR fa... 94 1e-18 UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opit... 80 3e-14 UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 80 3e-14 UniRef50_C7PCU2 Two component transcriptional regulator, LuxR fa... 76 6e-13 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 71 2e-11 Sequences not found previously or not previously below threshold: UniRef50_B1ZN14 Two component transcriptional regulator, LuxR fa... 75 7e-13 UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 ... 74 2e-12 UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiob... 73 5e-12 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 70 2e-11 UniRef50_B2KBW2 Two component transcriptional regulator, LuxR fa... 69 6e-11 UniRef50_A8G0P8 Two component transcriptional regulator, LuxR fa... 69 1e-10 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 68 1e-10 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 68 2e-10 UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 67 3e-10 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 67 3e-10 UniRef50_Q2BQ84 Regulatory protein, LuxR:Response regulator rece... 66 5e-10 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 66 5e-10 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 66 6e-10 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 65 7e-10 UniRef50_C6E2Z2 Two component transcriptional regulator, LuxR fa... 65 8e-10 UniRef50_C5V4D3 Transcriptional regulator, LuxR family n=1 Tax=G... 65 8e-10 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 65 8e-10 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 65 9e-10 UniRef50_Q8PM22 Transcriptional regulator n=3 Tax=Xanthomonas Re... 65 9e-10 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 65 9e-10 UniRef50_B5JP13 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 65 9e-10 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 65 1e-09 UniRef50_Q04VJ6 Receiver component of a two-component response r... 65 1e-09 UniRef50_B4D4R4 Two component transcriptional regulator, LuxR fa... 65 1e-09 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 65 1e-09 UniRef50_A3K169 Response regulator n=1 Tax=Sagittula stellata E-... 65 1e-09 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 64 2e-09 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 64 2e-09 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 64 2e-09 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 64 2e-09 UniRef50_A5G586 Two component transcriptional regulator, LuxR fa... 64 2e-09 UniRef50_Q21X49 Two component transcriptional regulator, LuxR fa... 64 2e-09 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 64 2e-09 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 63 3e-09 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 63 3e-09 UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudoma... 63 3e-09 UniRef50_B1ZT64 Two component transcriptional regulator, LuxR fa... 63 3e-09 UniRef50_A3Z7P9 Two-component response regulator, CheY-like rece... 63 3e-09 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 63 3e-09 UniRef50_Q2JYB4 Probable two-component response regulator protei... 63 3e-09 UniRef50_B5JEZ9 Transcriptional regulator, LuxR family protein n... 63 4e-09 UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR fa... 63 4e-09 UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR fa... 63 4e-09 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 63 5e-09 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 63 5e-09 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 63 5e-09 UniRef50_B3RA82 Response regulator protein; Response regulator r... 63 6e-09 UniRef50_B8CMA1 Response regulator containing a CheY-like receiv... 62 7e-09 UniRef50_A5VJY7 Two component transcriptional regulator, LuxR fa... 62 7e-09 UniRef50_C1F244 Two-component system response regulator n=1 Tax=... 62 7e-09 UniRef50_A8U4H7 Transcriptional regulator, LuxR family protein n... 62 7e-09 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 62 7e-09 UniRef50_Q842F8 Response regulator, two-component system n=8 Tax... 62 7e-09 UniRef50_B2G7N1 Two component response regulator n=7 Tax=Lactoba... 62 9e-09 UniRef50_Q47FR0 Two component transcriptional regulator, LuxR fa... 62 9e-09 UniRef50_Q2SQ58 Response regulator containing a CheY-like receiv... 62 9e-09 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 62 9e-09 UniRef50_B0TSG4 Two component transcriptional regulator, LuxR fa... 62 9e-09 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 62 1e-08 UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR fa... 62 1e-08 UniRef50_B1ZU68 Two component transcriptional regulator, LuxR fa... 62 1e-08 UniRef50_C0QJ84 Two-component response regulator protein n=1 Tax... 62 1e-08 UniRef50_P58664 Uncharacterized response regulatory protein ygeK... 62 1e-08 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 62 1e-08 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 62 1e-08 UniRef50_C4ZM15 Two component transcriptional regulator, LuxR fa... 62 1e-08 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 62 1e-08 UniRef50_C4XSZ8 NarL family two-component response regulator n=2... 62 1e-08 UniRef50_C9M9U6 Response regulator GacA n=1 Tax=Jonquetella anth... 62 1e-08 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 61 1e-08 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 61 1e-08 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 61 1e-08 UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR fa... 61 2e-08 UniRef50_A5E9F2 Putative Transcriptional regulatory protein, lux... 61 2e-08 UniRef50_UPI0001744DFC response regulator with a HTH DNA-binding... 61 2e-08 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 61 2e-08 UniRef50_A9DUF6 Two-component response regulator n=1 Tax=Oceanib... 61 2e-08 UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=... 61 2e-08 UniRef50_C4XNR8 NarL family two-component response regulator n=1... 61 2e-08 UniRef50_Q475M9 Regulatory protein, LuxR:Response regulator rece... 61 2e-08 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 60 2e-08 UniRef50_A1SCH1 Regulatory protein, LuxR n=2 Tax=Nocardioides sp... 60 2e-08 UniRef50_C7PDL7 Two component transcriptional regulator, LuxR fa... 60 2e-08 UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR fa... 60 2e-08 UniRef50_C5A924 Two component transcriptional regulator, LuxR fa... 60 2e-08 UniRef50_C0A2L6 Response regulator receiver protein n=1 Tax=Opit... 60 2e-08 UniRef50_A0NVX8 Two component transcriptional regulator, LuxR fa... 60 3e-08 UniRef50_A5P6H5 Two component transcriptional regulator, LuxR fa... 60 3e-08 UniRef50_Q023R1 Two component transcriptional regulator, LuxR fa... 60 3e-08 UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding... 60 3e-08 UniRef50_Q31FU6 Two component transcriptional regulator, LuxR fa... 60 3e-08 UniRef50_D2Q428 Two component transcriptional regulator, LuxR fa... 60 3e-08 UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family... 60 3e-08 UniRef50_C7LQH4 Two component transcriptional regulator, LuxR fa... 60 3e-08 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 60 4e-08 UniRef50_B8DW58 Response regulator of two-component system n=39 ... 60 4e-08 UniRef50_Q2RU94 Sensor protein n=1 Tax=Rhodospirillum rubrum ATC... 60 5e-08 UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Ta... 60 5e-08 UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR fa... 59 5e-08 UniRef50_A0KNC9 Transcriptional regulatory protein FixJ n=1 Tax=... 59 5e-08 UniRef50_C1ZGK9 Response regulator containing a CheY-like receiv... 59 5e-08 UniRef50_Q47I89 Two component transcriptional regulator, LuxR fa... 59 5e-08 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 59 5e-08 UniRef50_A4ABN5 Two-component system response regulator n=1 Tax=... 59 5e-08 UniRef50_Q0S3P7 Response regulator, two-component system n=11 Ta... 59 6e-08 UniRef50_Q1LFI0 Two component transcriptional regulator, LuxR fa... 59 6e-08 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 59 6e-08 UniRef50_Q0K3Q8 Response regulator, NarL-family n=1 Tax=Ralstoni... 59 6e-08 UniRef50_B4T4T3 EsrB n=38 Tax=Enterobacteriaceae RepID=B4T4T3_SALNS 59 7e-08 UniRef50_B3PWQ9 Two-component response regulator nitrogen regula... 59 7e-08 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 59 7e-08 UniRef50_Q021D5 Two component transcriptional regulator, LuxR fa... 59 7e-08 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 59 7e-08 UniRef50_Q7UUD3 Probable transcriptional regulatory protein fixJ... 59 7e-08 UniRef50_C3BGJ6 Two component transcriptional regulator, LuxR n=... 59 7e-08 UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas Re... 59 7e-08 UniRef50_Q391P2 Two component transcriptional regulator, LuxR fa... 59 7e-08 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 59 8e-08 UniRef50_B1T1G9 Two component transcriptional regulator, LuxR fa... 58 8e-08 UniRef50_C4KBL1 Two component transcriptional regulator, LuxR fa... 58 9e-08 UniRef50_D1C6P4 Transcriptional regulator, LuxR family n=1 Tax=S... 58 9e-08 UniRef50_UPI00016AA17B two component transcriptional regulator, ... 58 9e-08 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 58 1e-07 UniRef50_B1M303 Transcriptional regulator, LuxR family n=2 Tax=M... 58 1e-07 UniRef50_C6B715 Transcriptional regulator, LuxR family n=1 Tax=R... 58 1e-07 UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms Re... 58 1e-07 UniRef50_Q3JAH3 Two component transcriptional regulator, LuxR fa... 58 1e-07 UniRef50_A6T252 DNA-binding response regulator, LuxR family n=1 ... 58 1e-07 UniRef50_Q5E1C3 Two component response regulator n=17 Tax=Gammap... 58 1e-07 UniRef50_C6Y2F0 Response regulator receiver n=1 Tax=Pedobacter h... 58 1e-07 UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=M... 58 1e-07 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 58 1e-07 UniRef50_B0MWF4 Putative uncharacterized protein n=1 Tax=Alistip... 58 1e-07 UniRef50_Q2NB98 Sensor histidine kinase n=1 Tax=Erythrobacter li... 58 1e-07 UniRef50_Q7NMJ2 Two-component response regulator n=3 Tax=Gloeoba... 58 1e-07 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 58 1e-07 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 58 1e-07 UniRef50_Q2YB36 Two component transcriptional regulator, LuxR fa... 58 1e-07 UniRef50_Q89XB5 Transcriptional regulatory protein n=1 Tax=Brady... 58 2e-07 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_B0UG66 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_Q1QT34 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_Q12FM5 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_B8ICC9 Transcriptional regulator, LuxR family n=4 Tax=R... 58 2e-07 UniRef50_A8L8A4 GAF modulated transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_UPI0001C31456 two component transcriptional regulator, ... 57 2e-07 UniRef50_Q3SW32 Two component transcriptional regulator, LuxR fa... 57 2e-07 UniRef50_D0IVR3 Two component transcriptional regulator, LuxR n=... 57 2e-07 UniRef50_B0NRV8 Putative uncharacterized protein n=1 Tax=Bactero... 57 2e-07 UniRef50_A5LFV2 FimR protein n=3 Tax=Porphyromonas gingivalis Re... 57 2e-07 UniRef50_A9EQD2 Putative two-component system response regulator... 57 2e-07 UniRef50_C5BZU7 Two component transcriptional regulator, LuxR fa... 57 2e-07 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 57 2e-07 UniRef50_C1DGA2 Transcriptional regulator, LuxR family n=3 Tax=P... 57 2e-07 UniRef50_A6AS40 Two component response regulator n=5 Tax=Vibrio ... 57 2e-07 UniRef50_A1BJU3 Two component transcriptional regulator, LuxR fa... 57 2e-07 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 57 2e-07 UniRef50_Q024Q1 Transcriptional regulator, LuxR family n=1 Tax=C... 57 2e-07 UniRef50_B8L629 Regulatory protein, LuxR:Response regulator rece... 57 2e-07 UniRef50_P37740 C4-dicarboxylate transport transcriptional regul... 57 2e-07 UniRef50_B8HS28 Transcriptional regulator, LuxR family n=38 Tax=... 57 2e-07 UniRef50_Q11XC0 Fimbrial Z protein; probable signal transducer n... 57 2e-07 UniRef50_Q46V74 Regulatory protein, LuxR:Response regulator rece... 57 2e-07 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 57 2e-07 UniRef50_C1SGH5 Response regulator containing a CheY-like receiv... 57 2e-07 UniRef50_D1BUX3 Transcriptional regulator, LuxR family n=1 Tax=X... 57 2e-07 UniRef50_A1VAY8 Two component transcriptional regulator, LuxR fa... 57 3e-07 UniRef50_D2Q8N6 Two-component response regulator n=6 Tax=Actinob... 57 3e-07 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 57 3e-07 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 57 3e-07 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 57 3e-07 UniRef50_Q8XQS8 Probable transcription regulator protein n=7 Tax... 57 3e-07 UniRef50_A5W4E2 Response regulator receiver protein n=4 Tax=Pseu... 57 3e-07 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 57 3e-07 UniRef50_C0N287 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 57 3e-07 UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfo... 57 3e-07 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 57 3e-07 UniRef50_A7AIL4 Putative uncharacterized protein n=4 Tax=Parabac... 57 3e-07 UniRef50_UPI0001C342BD hypothetical protein EcanA3_16147 n=1 Tax... 57 3e-07 UniRef50_UPI00016C424A two component transcriptional regulator, ... 57 3e-07 UniRef50_Q2W107 Response regulator containing a CheY-like receiv... 57 3e-07 UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family... 57 3e-07 UniRef50_B7AAT6 Two component transcriptional regulator, LuxR fa... 57 3e-07 UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=P... 57 3e-07 UniRef50_A8TRW2 Response regulator, NarL-family protein n=1 Tax=... 57 3e-07 UniRef50_B4F1Q9 LuxR-family transcriptional regulator n=3 Tax=Pr... 57 3e-07 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 57 3e-07 UniRef50_C1A6M2 NarL family two-component response regulator n=1... 57 3e-07 UniRef50_B1VE62 Two-component system response regulator n=3 Tax=... 57 4e-07 UniRef50_C6MFJ7 Two component transcriptional regulator, LuxR fa... 57 4e-07 UniRef50_C5S6K7 Two component transcriptional regulator, LuxR fa... 57 4e-07 UniRef50_B3PBX1 Response regulator receiver domain protein n=1 T... 57 4e-07 UniRef50_C0A665 Response regulator receiver protein n=1 Tax=Opit... 57 4e-07 UniRef50_Q988Y3 Two-component regulator n=1 Tax=Mesorhizobium lo... 57 4e-07 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 57 4e-07 UniRef50_A6BYP5 Response regulator receiver domain protein n=1 T... 57 4e-07 UniRef50_B1ZJJ2 Transcriptional regulator, LuxR family n=7 Tax=M... 56 4e-07 UniRef50_P26487 Transcriptional regulatory protein fixJ n=11 Tax... 56 4e-07 UniRef50_Q3BU15 Two-component system response regulator, LuxR fa... 56 4e-07 UniRef50_B0TQI9 Two component transcriptional regulator, LuxR fa... 56 4e-07 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 56 4e-07 UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas Rep... 56 5e-07 UniRef50_A6LIL1 Transcriptional regulator n=6 Tax=Bacteroidales ... 56 5e-07 UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_C5CTM1 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexac... 56 5e-07 UniRef50_C4ZNR1 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_B6A1Y1 Transcriptional regulator, LuxR family n=2 Tax=R... 56 5e-07 UniRef50_C6Y109 Response regulator receiver n=1 Tax=Pedobacter h... 56 5e-07 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_Q603M9 DNA-binding response regulator, LuxR family n=1 ... 56 5e-07 UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiob... 56 5e-07 UniRef50_Q47P06 Regulatory protein, LuxR n=1 Tax=Thermobifida fu... 56 5e-07 UniRef50_UPI0001AEF693 LuxR family transcriptional regulator n=1... 56 5e-07 UniRef50_B1XKM6 Two-component response regulator n=28 Tax=Cyanob... 56 5e-07 UniRef50_Q2W8X3 Response regulator n=2 Tax=Magnetospirillum RepI... 56 5e-07 UniRef50_Q124P8 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_C5C3G8 Two component transcriptional regulator, LuxR fa... 56 5e-07 UniRef50_C1SMK1 Response regulator containing a CheY-like receiv... 56 6e-07 UniRef50_A1SCG5 Transcriptional regulator, LuxR family n=1 Tax=N... 56 6e-07 UniRef50_P23221 Transcriptional regulatory protein fixJ n=9 Tax=... 56 6e-07 UniRef50_C7PLV7 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_C5SQM4 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_Q3JAP2 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 56 6e-07 UniRef50_Q89DY0 Two-component response regulator n=1 Tax=Bradyrh... 56 6e-07 UniRef50_Q6MJE1 Two-component response regulator homolog n=1 Tax... 56 6e-07 UniRef50_A5FAW2 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_D0L5W2 Response regulator receiver n=36 Tax=Actinomycet... 56 6e-07 UniRef50_C7BU28 Two component transcriptional regulator, luxr fa... 56 7e-07 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 56 7e-07 UniRef50_B9XH34 Two component transcriptional regulator, LuxR fa... 56 7e-07 UniRef50_B0U7I7 Transcriptional regulator, LuxR family n=1 Tax=M... 56 7e-07 UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n... 56 7e-07 UniRef50_C7PEC4 Two component transcriptional regulator, LuxR fa... 56 7e-07 UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 ... 55 7e-07 UniRef50_Q2SBZ4 Response regulator n=1 Tax=Hahella chejuensis KC... 55 7e-07 UniRef50_Q6JHR3 Transcriptional regulator, LuxR family n=1 Tax=S... 55 7e-07 UniRef50_C6CZA5 Two component transcriptional regulator, LuxR fa... 55 7e-07 UniRef50_D1S2K1 Transcriptional regulator, LuxR family n=1 Tax=M... 55 7e-07 >UniRef50_Q83J60 HTH-type transcriptional regulator dctR n=59 Tax=Enterobacteriaceae RepID=DCTR_SHIFL Length = 176 Score = 234 bits (597), Expect = 1e-60, Method: Composition-based stats. Identities = 174/176 (98%), Positives = 175/176 (99%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ Sbjct: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 IERLKPVHVI+FSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEA VSLSRKQ Sbjct: 61 IERLKPVHVIVFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEANVSLSRKQ 120 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV Sbjct: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 >UniRef50_B7LQG5 Putative HTH-type transcriptional regulator dctR, Probable repressor of dctA dicarboxylate transporter gene n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQG5_ESCF3 Length = 187 Score = 219 bits (557), Expect = 5e-56, Method: Composition-based stats. Identities = 108/176 (61%), Positives = 144/176 (81%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 MFL+IT+DT+ F A+ +L+K VVH+Q+E++ID++LHQ+ +IIDTLMNNVFHS + Sbjct: 12 MFLVITKDTVLFNAITFLLNKSQVVHVQDEDDIDLVLHQHCHIIIDTLMNNVFHSAMAEK 71 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 I++L+P VI+FSPF IKRCLG +PVTFV R I++IDF+ L+N C PEA + LSRKQ Sbjct: 72 IKQLRPEQVIVFSPFIIKRCLGDIPVTFVLRNISLIDFMVLVNRGLCPAPEADIMLSRKQ 131 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HQVLS IA QM TEDIL+K++ISLKTFYCHKH++MMILNL+RI EL+++ H+ YL+ Sbjct: 132 HQVLSYIAQQMQTEDILQKMQISLKTFYCHKHSVMMILNLRRITELIKYPHVSYLI 187 >UniRef50_P63206 Transcriptional regulator gadE n=61 Tax=Enterobacteriaceae RepID=GADE_ECO57 Length = 175 Score = 194 bits (493), Expect = 1e-48, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 81/175 (46%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 M ++T+D+ + ++ I + EI + ++ VIIDT N++ + Sbjct: 1 MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHNHILDEEAIKF 60 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 +E+L +I+ +P++I + K P+ FV R +I + + + G + + + S Q Sbjct: 61 LEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEITYGKHLPHKNSQLCFSHNQ 120 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 +++ I +I L IS +T K NIM L L+R++++V Y Sbjct: 121 FKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIVTLGITSYF 175 >UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNU7_THASP Length = 220 Score = 94.3 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Query: 94 TIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 T+ D + G Y + P L+ ++ QVL IA +T+ I ++L I+ T H+ N Sbjct: 133 TVADALRDSPGVYAAAPR----LTARERQVLQLIAEGLTSVQIGDRLHIAASTVEVHRRN 188 Query: 154 IMMILNLKRINELVRH 169 +M L+L + EL R+ Sbjct: 189 LMRKLDLHNVAELTRY 204 >UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A9E4_9BACT Length = 227 Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 17/149 (11%) Query: 38 HQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVT-----FVPRT 92 H V+ D M V + + QI+ + II + R + FV ++ Sbjct: 48 HNPDIVVADLSMPGVTGLDLIQQIKDAGLLTRIIMLTMHRTRLTVHEAFSVGANAFVLKS 107 Query: 93 ITIIDFVALINGSYCSV------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKL 140 D V +I+ + P A +LS ++ VL I+ ++ ++I +L Sbjct: 108 DAFEDLVDIIHRVHEGENTLTSKGLPPYEPACAATLSPREKDVLEGISAGLSNKEISRRL 167 Query: 141 KISLKTFYCHKHNIMMILNLKRINELVRH 169 IS KT H+ IM LN+ + ELVR Sbjct: 168 AISSKTVETHRSRIMQKLNVTKATELVRE 196 >UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLG5_9BACT Length = 225 Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 99 VALINGSYCSVPEAAVS---LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 +A + S P+AA S LS ++ Q+L +A +T++I +L IS++T H+ NIM Sbjct: 142 MASVMRSLILNPDAASSEIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNHRTNIM 201 Query: 156 MILNLKRINELVRH 169 LNL + L R+ Sbjct: 202 RKLNLHDVAALTRY 215 >UniRef50_C7PCU2 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PCU2_CHIPD Length = 220 Score = 75.8 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 37/59 (62%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 EA LS+ + +V+ IA M+T++I + L IS+KT H+HNI LNL N L+++ Sbjct: 149 EAHHKLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKLNLTGHNSLIKY 207 >UniRef50_B1ZN14 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B1ZN14_OPITP Length = 215 Score = 75.4 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 25/156 (16%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQI-ERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTI 93 + +++D + + + L +I ++L + V++FS P I+ L FV +T Sbjct: 47 KPDLLVLDAKLPGLNGVDLLRRISKKLSGMRVLVFSGHENPVLIREMLEAGAHGFVEKTA 106 Query: 94 TIIDF-----VALINGSYC---------------SVPEAAVSLSRKQHQVLSCIANQMTT 133 + +F G+Y S A L+ ++ ++L +A +T Sbjct: 107 GLFEFKKGLETVASGGTYFGPAVAALLRNVVANPSASNTADFLTDREREILQLVAESHST 166 Query: 134 EDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 ++I KL IS+KT H+ N+M LNL + L R+ Sbjct: 167 KEIAAKLGISIKTVDNHRTNLMRKLNLHDVASLTRY 202 >UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY27_AZOSE Length = 215 Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 32/192 (16%) Query: 10 MFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQNAFV-IIDTLMNNVFHSNFLTQIER 63 MF A++ +L K + I +E ID++ HQ + +D M + ++ Sbjct: 13 MFRHALRAMLEKEPGIRIVGEASNGDELIDLISHQPVDIACVDIGMPGMNGIEATRRLLA 72 Query: 64 LKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVA------------------ 100 ++P V VI S F+ ++ L +V + + + Sbjct: 73 IRPHVRVIGLSAFSDRQFVLDLLNAGATGYVTKAEAGEELLRAIHTVQQSKTYLCPDVAA 132 Query: 101 -LINGSYCSVPE--AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 + N + P+ +A ++ ++ QVL IA T+ I ++L ++ T H+ NIM Sbjct: 133 TVTNALLDNAPKDISAPRITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRK 192 Query: 158 LNLKRINELVRH 169 L+L + EL ++ Sbjct: 193 LDLHSVAELTKY 204 >UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG8_SYMTH Length = 197 Score = 72.7 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 44/187 (23%) Query: 27 IQNEEEIDVMLH--------------QNAFVIIDTLMNNVFHSNFLTQIERLKPV-HVII 71 +Q+E +++++ + VI+D + ++ I+ P VI Sbjct: 2 LQSEPDLELVGEAGRGEEAVELTKALKPDVVIMDISLPDMSGIEATRLIKEAVPETRVIG 61 Query: 72 FS-----PFNIKRCLGKVPVTFVPR------------------------TITIIDFVALI 102 + PF ++ V R T +++ Sbjct: 62 LTMHEEEPFVLEFLRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYVSR 121 Query: 103 NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 G PE L+ ++ ++L IA +T +I +L IS KT H+ N++ L + Sbjct: 122 PGRAVGQPEEPCPLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHD 181 Query: 163 INELVRH 169 ELVR+ Sbjct: 182 RTELVRY 188 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 70.8 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS+++ ++L IA +DI EKL +S+KT HK +IM LNLK ELV + Sbjct: 156 LSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 28/159 (17%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTI 93 + VI+D M N+ S +I + P VI S I R + +V + Sbjct: 47 KPDIVIMDITMPNMNGSIATEKIMQALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDS 106 Query: 94 TIIDFV----ALINGSYCSVPEAAVSL-------------------SRKQHQVLSCIANQ 130 + A+ G Y P A +L S ++ +VL IA Sbjct: 107 AFAELFDAIQAVGRGKYYISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEG 166 Query: 131 MTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 + T I E+L +S+KT H+ NIM L + + L R Sbjct: 167 VKTRQIAERLFVSIKTVEAHRRNIMNKLMISSVAGLTRF 205 >UniRef50_B2KBW2 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBW2_ELUMP Length = 215 Score = 69.3 bits (168), Expect = 6e-11, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 38/66 (57%) Query: 104 GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 G + L+ K+ Q+L IA ++++I ++ +SL T + H++NIM L++ + Sbjct: 141 GKASPSKKDPSGLTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQ 200 Query: 164 NELVRH 169 ELVR+ Sbjct: 201 AELVRY 206 >UniRef50_A8G0P8 Two component transcriptional regulator, LuxR family n=16 Tax=Gammaproteobacteria RepID=A8G0P8_SHESH Length = 209 Score = 68.5 bits (166), Expect = 1e-10, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 77/190 (40%), Gaps = 18/190 (9%) Query: 2 FLIITRDTMFFTAMKNILSK--GNVVHIQNEEEI--DVMLHQNAFVIIDTLMNNVFHSNF 57 ++ D ++ +L + N+ N ++ V L + A VI+D+ M V Sbjct: 7 LYLVDDDIAILDSLSFMLGQFGYNITAFNNGDDFLNTVPLERPACVILDSRMPEVSGQEV 66 Query: 58 LTQIERLKPVHVIIFSPFNIKRCLG------------KVPVTFVPRTITIIDFVALINGS 105 ++ + IIF + + + PV+ + I + + + Sbjct: 67 QQKLLEIDSPLGIIFLTGHGDMPMAVDAFRKGACDFFQKPVSGKALSCAIDKAMLYSHRT 126 Query: 106 Y--CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 + S+ +LS ++ +VL+ + MT + I E L +SL+T H+ +M L + + Sbjct: 127 FEAQSLKRKLSTLSEREQEVLNLLTKGMTNKQISEALFLSLRTIEVHRAKVMKKLEVHNM 186 Query: 164 NELVRHQHID 173 EL ++ + Sbjct: 187 AELAKYSQMS 196 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SL+ ++ +VL IA +I ++L I++KT H+ IM L+L EL + Sbjct: 147 SLTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAY 201 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 67.7 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%) Query: 103 NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 N S A LS ++ +VL +A T ++ + L IS+KT H+ +IM + L Sbjct: 137 NAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIGLHS 196 Query: 163 INELVRHQHIDYLV 176 LVR+ + + LV Sbjct: 197 RAALVRYAYQNGLV 210 >UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQZ3_9BACT Length = 222 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%) Query: 96 IDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 + + +V + LS ++ +VL +A +T+ I E L++S+KT H+ N+M Sbjct: 127 ASLLRESHLVGSAVAKKKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLM 186 Query: 156 MILNLKRINELVR 168 L+ + EL R Sbjct: 187 KKLDARSAVELTR 199 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%) Query: 87 TFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 F R I ++ L+ ++ ++L +A D+ + L IS+KT Sbjct: 129 FFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVKT 188 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H+ IM L + + +LVR+ Sbjct: 189 AETHRARIMAKLGIDSVADLVRY 211 >UniRef50_Q2BQ84 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQ84_9GAMM Length = 204 Score = 66.2 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 41/87 (47%) Query: 82 GKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLK 141 G V + V R +T + G+ V + +LSR++ +V++ + I E+L Sbjct: 110 GDVLLRLVSRALTKANKAKDEQGAQQEVLDCYANLSRREKEVMALVVAGNANRQIAEELD 169 Query: 142 ISLKTFYCHKHNIMMILNLKRINELVR 168 IS KT H+ +M + + ELV+ Sbjct: 170 ISPKTVEVHRSRVMSKMRAGSLPELVK 196 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 66.2 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ +VL A +T +I +L IS+KT H+ NIM L L +LV++ Sbjct: 156 LTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKY 209 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 65.8 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 92 TITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 +I I D++ L++ +VP A LS ++ +VL+ +A +T+++ L IS T H+ Sbjct: 131 SILIKDYLKLLD---TAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKNTVDTHR 187 Query: 152 HNIMMILNLKRINELVRH 169 IM L+ I EL+R Sbjct: 188 RRIMEKLDCGNIAELIRF 205 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 65.4 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ QVL +A +T I +++S KT H+ N+M L++ ELV++ Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKY 210 >UniRef50_C6E2Z2 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter sp. M21 RepID=C6E2Z2_GEOSM Length = 215 Score = 65.4 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 80/199 (40%), Gaps = 32/199 (16%) Query: 3 LIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQNA-FVIIDTLMNNVFHSN 56 ++++ + + +L K + + + E++ +L ++ VIID +++ S+ Sbjct: 7 ILMSDQILVRQCLWVLLEKAPELDLAAQLDFAATELEEVLELHSDLVIIDPDSSDIDGSD 66 Query: 57 FLTQI-ERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFV-----ALINGSY 106 + + P +I S P + L FVP++ + + + NG Y Sbjct: 67 TIRSLVSGTFPAKALILSGRAEPKRVADLLNAGASGFVPKSSPVDELLWAVKAVTGNGFY 126 Query: 107 CS----------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 V L+ ++H ++ +A ++ + E+L IS+KT H Sbjct: 127 LPPELDAVVRRKGSTWSAAQPQQVILTPREHDIMVLLAQGKSSRAVSEQLLISVKTVEAH 186 Query: 151 KHNIMMILNLKRINELVRH 169 + +IM L L + L ++ Sbjct: 187 RAHIMKKLGLSGMAALAKY 205 >UniRef50_C5V4D3 Transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4D3_9PROT Length = 491 Score = 65.4 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 E A LSR+ V+ IA +T+ I +L IS T H+ N+M L L EL + Sbjct: 424 EGAGKLSRRHLDVIGLIAAGLTSAQIAARLNISQTTVITHRRNLMRKLGLHSAAELTAY 482 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 65.4 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 V LS ++ +V+ +A+ T ++I L IS KT H+ +M LNL ++VR+ Sbjct: 144 VQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRY 199 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 65.4 bits (158), Expect = 9e-10, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 96 IDFVALINGSYCSVP-EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + +G + P + LS ++ +V I+ +T+ I + L IS+KT H+ +I Sbjct: 148 AQIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEGKSTQQIGDALNISVKTVEVHRAHI 207 Query: 155 MMILNLKRINELVRH 169 L L+ ++R+ Sbjct: 208 REKLKLEDGASVLRY 222 >UniRef50_Q8PM22 Transcriptional regulator n=3 Tax=Xanthomonas RepID=Q8PM22_XANAC Length = 237 Score = 65.0 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 A L+ ++ +++ + ++T I +L +S+KT H+ N M+ LN++ I +L Sbjct: 143 AKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGTHRENCMLKLNIQSIAQL 202 Query: 167 VRH 169 R+ Sbjct: 203 TRY 205 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 65.0 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 25/158 (15%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQIERLKPV-HVIIFSPFNIKRCLGKV----PVTFVPRTI 93 Q +++D +M + + ++ P ++I + F + + V++V +T+ Sbjct: 62 QPDIILMDLMMPGMNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTV 121 Query: 94 TIIDFVALINGSYCSVP----EAAVSLSR----------------KQHQVLSCIANQMTT 133 + + + + G+Y +P E A +L+R ++ +VL IA + Sbjct: 122 SAEELIYALQGAYRGMPVMTGEVAQALTRGLRQRTVQGDDSGMTEREKEVLLLIAEGKSN 181 Query: 134 EDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQH 171 +DI E+L IS+KT H N++M L+ +L + H Sbjct: 182 KDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAH 219 >UniRef50_B5JP13 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP13_9BACT Length = 211 Score = 65.0 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 ++ L+ ++ VL + ++++I +S++T H+ NIM LNL+ ++ R Sbjct: 143 DSLKMLTPRETDVLQMVGEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTR 200 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 65.0 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 42/76 (55%) Query: 94 TIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 +I VA + S P+ L+ ++ ++L +A T ++ E+L +S+KT H+ + Sbjct: 128 SISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQH 187 Query: 154 IMMILNLKRINELVRH 169 IM L LK + +LV++ Sbjct: 188 IMNKLKLKNLADLVKY 203 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 65.0 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 +A LS ++ ++L +A + E I + L IS T H+ NIM LNL ++ +LV Sbjct: 152 AKKAFSVLSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLVM 211 Query: 169 H 169 + Sbjct: 212 Y 212 >UniRef50_B4D4R4 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4R4_9BACT Length = 195 Score = 65.0 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 112 AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 AA L+ ++ +L IA M+ +++ E++ I+ KT H+ +M L + + L R+ Sbjct: 127 AASHLTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATLTRY 184 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 65.0 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS+++ ++L IA ++I E+L IS KT HK +IM L +K+ ++L+R Sbjct: 152 LSKREKEILPLIALGYGNKEIAERLFISAKTVEVHKSHIMKKLEMKKFSDLLRF 205 >UniRef50_A3K169 Response regulator n=1 Tax=Sagittula stellata E-37 RepID=A3K169_9RHOB Length = 218 Score = 65.0 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%) Query: 87 TFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 T+V R ++D + + + +L+ ++ QVL IA + I E+L IS+KT Sbjct: 131 TYVAR--AVLDILE------AADNDGREALTMRERQVLYLIAEGCSNAAIAERLSISVKT 182 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H+ +M L + + +LV + Sbjct: 183 VDNHRTRLMAKLQVHSVAQLVAY 205 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ ++L IA+ T I + L IS+KT H+ N+M LNL ELVR+ Sbjct: 141 AELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMGKLNLHSTAELVRY 196 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 E LS ++ +VL IA T ++I EKL IS+KT H I L L R +ELVR+ Sbjct: 147 EKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRY 205 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 38/72 (52%) Query: 98 FVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 +A + A SL+ ++ +V+ + ++ +++ L+IS+KT H+ ++M Sbjct: 139 LLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMRK 198 Query: 158 LNLKRINELVRH 169 L ++ ELVR+ Sbjct: 199 LGMQNSVELVRY 210 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 88 FVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 FV ++ + +L+ ++ +V I ++T++I + +S KT Sbjct: 135 FVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVSAKTV 194 Query: 148 YCHKHNIMMILNLKRINELVRH 169 H+ NI L LK EL+R+ Sbjct: 195 EVHRMNIKTKLGLKTAAELIRY 216 >UniRef50_A5G586 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=A5G586_GEOUR Length = 226 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 39/68 (57%) Query: 102 INGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 G+ + ++ V LS+++ +VL IAN +T++I +S+KT + ++M LNL Sbjct: 149 TKGADANSSDSCVQLSKREREVLQLIANGNSTKEIAFTFGVSIKTVAVQRMSVMKKLNLF 208 Query: 162 RINELVRH 169 + +L ++ Sbjct: 209 NVADLTKY 216 >UniRef50_Q21X49 Two component transcriptional regulator, LuxR family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21X49_RHOFD Length = 487 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 + + +S +Q QVL +A T+ I EKL+IS T H+ ++M L+L + EL R+ Sbjct: 420 DRSARISARQRQVLELVAMGCTSAQIAEKLQISPATVVTHRRDLMGKLDLHTVAELTRY 478 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 E L+ ++ ++L +A ++ +I + L IS+KT H+ NI+ L +K EL R+ Sbjct: 177 EPETPLTPREEEILKLVAEGHSSREIADTLFISVKTVERHRANILAKLGMKDRLELTRY 235 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 87 TFVPRTIT-IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 PR ++ ++D L + +L++++ ++L +A + ++I ++S+K Sbjct: 126 YLSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVK 185 Query: 146 TFYCHKHNIMMILNLKRINELVRH 169 T HK N+M L++ +LV++ Sbjct: 186 TVEAHKFNLMRKLDIHNKAQLVQY 209 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 36/61 (59%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 L+ ++ +++ +A + +++ + L IS+KT H+ IM L K ++LVR+ +++ Sbjct: 155 LTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRNHI 214 Query: 176 V 176 + Sbjct: 215 I 215 >UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudomallei group RepID=Q3JL34_BURP1 Length = 223 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQH 171 L+R++ QVL IA+ M +I L IS KT CH+ +M L + + ++ + Sbjct: 156 LTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAY 211 >UniRef50_B1ZT64 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZT64_OPITP Length = 274 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 88 FVPRTITIIDFVALINGSYCSVPEAAVS-LSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 FV + ++G+ ++ VS LS ++ ++++ I + T +I KL +S+KT Sbjct: 164 FVSERVATQMLNRFVDGTEDGAADSPVSSLSDRELEIVNLIGEGLPTREIAAKLFLSIKT 223 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H+ +I LNL +LV+ Sbjct: 224 VETHRVHIKRKLNLANATQLVQF 246 >UniRef50_A3Z7P9 Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z7P9_9SYNE Length = 207 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 13/147 (8%) Query: 38 HQNAFVIIDTLMNNVFHSNFLTQIERLKPV-HVIIFSPFNIKRCLGKVPVTFVPRTITII 96 HQ +I+D + + + P +I+ S P + P ++ Sbjct: 61 HQPDLLILDLSLPDQGGEVVAEALVEFHPEARLIVLSAQASSFV---CPASLQPMLHAVV 117 Query: 97 DFVA--------LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 D + + P L+R++ +VLS I ++ + I +++ +S+ T Sbjct: 118 DKIEAYDCLGAEIAELLRAKAPAPLAKLTRREREVLSGIGAGLSNQQIADRMHLSVHTVE 177 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYL 175 H+ N+ L K ELVR+ + L Sbjct: 178 THRRNLSGKLGFKG-AELVRYATLQSL 203 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 63.1 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +L+ ++ +VL +A T +I E+L IS +T H+ N+M L+L+ +L+R+ Sbjct: 152 TLTIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRY 206 >UniRef50_Q2JYB4 Probable two-component response regulator protein n=1 Tax=Rhizobium etli CFN 42 RepID=Q2JYB4_RHIEC Length = 217 Score = 63.1 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 30/179 (16%) Query: 18 ILSKGNVVHIQNEEEIDVMLHQNAF------------------VIIDTLMNNVFHSNFLT 59 ++S V H +EEI + + A VIID + + + LT Sbjct: 26 LVSNDLVFHRSLDEEIQSLGSRPASFSSARDFLTHARDARFACVIIDNTVPD-LDVDVLT 84 Query: 60 QIERLKPVH--VIIFSP---FNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAV 114 + L+ V VI+ + + + PVTF+PR + V LI S + + Sbjct: 85 LLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLPRPFGTDNLVQLIRSSVEATISISQ 144 Query: 115 ------SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 SLS ++ QV+ + + + + KL IS+ T H+ +M + + + ELV Sbjct: 145 LDCRYQSLSARERQVMQFVVEGLLNKQVAYKLNISVITVKAHRGQVMRKMRARSLPELV 203 >UniRef50_B5JEZ9 Transcriptional regulator, LuxR family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEZ9_9BACT Length = 200 Score = 63.1 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 42/76 (55%) Query: 94 TIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 I + + + S E +L+ ++ +VL+ IA+ + +DI KL +S+KT H+ + Sbjct: 112 NITEVLRSVVRSIDRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCS 171 Query: 154 IMMILNLKRINELVRH 169 +M L+L + ++ R+ Sbjct: 172 MMRKLDLHNVADITRY 187 >UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=C6E2Z1_GEOSM Length = 216 Score = 63.1 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 S+ + V L+ ++ +VL IA ++ +L I++KT H+ IM L ++ + EL Sbjct: 144 SLTQPEVPLTPREREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELT 203 Query: 168 RH 169 ++ Sbjct: 204 KY 205 >UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ9_9BACT Length = 219 Score = 63.1 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 12/104 (11%) Query: 64 LKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQV 123 L + ++ ++ R KV +T + R I + + S + LS ++ V Sbjct: 118 LAALRAVVVGELHVSR---KVGITLMQRAIKMPEL---------SAADGVAKLSDRELHV 165 Query: 124 LSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 I + T +I +L IS+KT H+ NI L L+ ELV Sbjct: 166 FELIGAGIPTREIATRLGISIKTVETHRENIKHKLELQSGTELV 209 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 62.7 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 95 IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + ++ G SV + +L+ ++ ++ +A +I E L +S+KT H+ N+ Sbjct: 137 VKGYLNDARGQ--SVSSSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVKTVEKHRSNL 194 Query: 155 MMILNLKRINEL 166 M L + EL Sbjct: 195 MQKLGVHSAAEL 206 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 62.7 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQ 170 E LS K+ ++L + + M++ +I EKL++S++T H+ N+M L ++ ELVR Sbjct: 153 ERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAELVRMA 212 Query: 171 HIDYLV 176 D L+ Sbjct: 213 VEDKLI 218 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 62.7 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 101 LINGSYC--SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 L G + + E A +L+ ++ ++ +A + + I L IS+KT H+ NIM L Sbjct: 143 LSPGGHALGELIEGAETLTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKL 202 Query: 159 NLKRINELVRH 169 + ++VR+ Sbjct: 203 GAHSLADIVRY 213 >UniRef50_B3RA82 Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) n=1 Tax=Cupriavidus taiwanensis RepID=B3RA82_CUPTR Length = 223 Score = 62.7 bits (151), Expect = 6e-09, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 21/134 (15%) Query: 57 FLTQIERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALIN-----GSYC 107 E+ V VI S P ++R +V + + V I G+Y Sbjct: 69 AARFAEQFPSVRVIALSMHKDPEYVRRAFALGVAAYVLKEAPAHELVTAIRTVAAGGTYL 128 Query: 108 ------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 P + +L+ K+ VL +A + ++I E+L S++T H+ ++ Sbjct: 129 NAELQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLR 188 Query: 156 MILNLKRINELVRH 169 L + ELV++ Sbjct: 189 RKLRVGGRAELVKY 202 >UniRef50_B8CMA1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Gammaproteobacteria RepID=B8CMA1_SHEPW Length = 196 Score = 62.3 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 74/169 (43%), Gaps = 17/169 (10%) Query: 18 ILSKGNVVHI--QNEEEIDVM-LHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSP 74 + ++ V+ I EE ++++ H VI D M + + ++R+K +I Sbjct: 21 LKAEHQVLAIAKDGEELVELVKQHDPELVITDISMPGMTGIAAVAALKRIKKDLRVICLT 80 Query: 75 FNIKRCLGKVPVT-----FVPRTITIIDFVALINGSYC---------SVPEAAVSLSRKQ 120 + ++ + + +V + D V +N V ++A +LS +Q Sbjct: 81 MHDEQEYAEGAIAAGALGYVLKHEATDDLVDAVNSVLAGKQYLSKSVQVEDSAPTLSARQ 140 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 VL +A + + + + L IS +T HK++IM ++ K EL+++ Sbjct: 141 LSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEAKSSAELIQY 189 >UniRef50_A5VJY7 Two component transcriptional regulator, LuxR family n=14 Tax=Lactobacillus RepID=A5VJY7_LACRD Length = 217 Score = 62.3 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 39/77 (50%) Query: 93 ITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 +T D + + GS V+LS+++ ++L I T ++I K+ IS KT HK Sbjct: 132 VTKKDLLVIKGGSPHFDLGNYVALSKREQEILPLIVLGYTNKEIATKMFISPKTVEAHKT 191 Query: 153 NIMMILNLKRINELVRH 169 IM LNL EL+ + Sbjct: 192 KIMQKLNLASHAELLHY 208 >UniRef50_C1F244 Two-component system response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F244_ACIC5 Length = 214 Score = 62.3 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 87 TFVPRTITIIDFVALINGSYCSVPEAAVS--LSRKQHQVLSCIANQMTTEDILEKLKISL 144 TF IT + +L + + P L+ ++ +VL +A +T++ L S Sbjct: 121 TFFSPVITDVVLQSLARSVHLTGPGIVYKERLTPREGEVLQLLAEGKSTKEAASVLGTST 180 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T + N+M L L+ +++LVR+ ++++ Sbjct: 181 FTVETQRKNVMRKLRLRNVSDLVRYAVRNHMI 212 >UniRef50_A8U4H7 Transcriptional regulator, LuxR family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U4H7_9PROT Length = 305 Score = 62.3 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 31/54 (57%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 +LS ++ +++ +A + + I +L IS +T H+ +M ++ + + +LVR Sbjct: 244 TLSAREREIMFLVAEGLANKQIAFRLGISFRTVEIHRARMMSKMDFRTMTDLVR 297 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 62.3 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 P+ A SL++++ +VL+ + ++ +I + L +S+KT H+ IM L + + LVR Sbjct: 149 APDPADSLTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVR 208 >UniRef50_Q842F8 Response regulator, two-component system n=8 Tax=Rhodococcus RepID=Q842F8_RHOSR Length = 209 Score = 62.3 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 24/153 (15%) Query: 40 NAFVIIDTLMNNVFHSNFLTQIERLKPV-HVIIFS-----------------PFNIKRCL 81 V++D +++ + L QI + P V++ S + K CL Sbjct: 48 PELVVLDIRLSDCNGLDLLEQISAISPETRVVMLSMYGAKGYVDKAKTRGARGYITKECL 107 Query: 82 GKVPV---TFVPRTITIIDFVALI--NGSYCSVPEAAV-SLSRKQHQVLSCIANQMTTED 135 + V V + + F A G S+ EA + SLS ++ +V+ IA+ +T + Sbjct: 108 DEELVSVLYTVMKDEGFVSFRADTTEPGGSESLLEANIDSLSSRELEVMKLIASGLTNTE 167 Query: 136 ILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 I E+L +S +T H+ +I L ++ EL R Sbjct: 168 IAEELTVSPRTVESHRASIQRKLLIRTRAELAR 200 >UniRef50_B2G7N1 Two component response regulator n=7 Tax=Lactobacillus RepID=B2G7N1_LACRJ Length = 217 Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 LS+++ +V IA + ++I +K+ IS KT HK NI L+L ELV++ +L Sbjct: 155 LSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHL 214 Query: 176 V 176 + Sbjct: 215 I 215 >UniRef50_Q47FR0 Two component transcriptional regulator, LuxR family n=9 Tax=Betaproteobacteria RepID=Q47FR0_DECAR Length = 218 Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 88 FVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 F+ + + + +++G P L+ ++HQ+ I + +I +L +S+KT Sbjct: 124 FINQAVAEKLTLQILHGRDTDAP--HTGLTDREHQIFLMILQGLGVTEIGRQLNLSVKTV 181 Query: 148 YCHKHNIMMILNLKRINELVRH 169 HK +I+ +NL+ ELVR+ Sbjct: 182 STHKASILAKMNLRNSAELVRY 203 >UniRef50_Q2SQ58 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQ58_HAHCH Length = 207 Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 70/196 (35%), Gaps = 33/196 (16%) Query: 3 LIITRDTMFFTA-----MKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNF 57 +IT D F + + + ++ + E+ +L+ N V + L ++ S Sbjct: 5 FVITDDHGIFRSGLKLIISGLYPDAEILEAASGSEVFRLLNANTDVDLVLLDLSMPDSQG 64 Query: 58 LTQIERLKPVHVIIFSPFNIKRC---------------LGKVPVTFVPRTITIIDFVALI 102 L + +LK + +PF + LG VP + I + L Sbjct: 65 LELLRKLKQE--FVMTPFAVISASEEAALIQGAIQLGALGYVPKSSSNAVIASAIQLMLS 122 Query: 103 NGSYCSV-----------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 G Y P + L+ +QH+VL +A M+ + I KL I+ T H Sbjct: 123 GGVYIPHELLRTGHDEGMPTGDICLTPRQHEVLGLLAEGMSNKQIGTKLSIAPGTIKAHI 182 Query: 152 HNIMMILNLKRINELV 167 I LN + V Sbjct: 183 AAIFRELNAANRTQAV 198 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 109 VPEAAV-SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 P A + L+ ++ VL+ +A +T + I +L IS +T H+ ++M L + + L Sbjct: 152 APAAQLDLLTPRERDVLAGVARGLTNKAIAAELGISRRTVEAHRESLMRKLQIHSVAGLT 211 Query: 168 RH 169 R Sbjct: 212 RF 213 >UniRef50_B0TSG4 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=B0TSG4_SHEHH Length = 222 Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ +Q Q+L IA +T +I E++ +S+KT H+ +IM LN+ I LVR Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVRF 207 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 VSL+ ++ +VL IAN +TT + E L IS T H+ N+M LN+ ELVR Sbjct: 145 VSLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRANLMQKLNVHNQVELVR 199 >UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR family n=46 Tax=Proteobacteria RepID=A3D3Y4_SHEB5 Length = 214 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 27/54 (50%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ QVL I DI E L I LKT H+ N+M LN + EL+ Sbjct: 155 LTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMHW 208 >UniRef50_B1ZU68 Two component transcriptional regulator, LuxR family n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZU68_OPITP Length = 238 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 35/58 (60%) Query: 112 AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 A +L+ ++ +VL +A + +++I ++L +S +T H+ NI+ L+ + +LV + Sbjct: 151 AGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLY 208 >UniRef50_C0QJ84 Two-component response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ84_DESAH Length = 218 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 76/202 (37%), Gaps = 34/202 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVM-LHQNAFVIIDTLMNNVFHS 55 L++ + ++K L + V + + + + H VI+D M ++ Sbjct: 8 ILLVDDHDILRQSLKKALEEKPNVKVLQGACNGLDAVRLTEKHCPNIVIMDINMPDLNGI 67 Query: 56 NFLTQIERLKPV-HVIIFS----PFNIKRCLGKVPVTFVPRTITIIDF----VALINGSY 106 QI P +I S FN+K + F+ +T ++ D + + +G Sbjct: 68 EAAKQIISKNPDIKIIALSMLCDEFNVKSMIQAGAKGFLLKTSSLEDLHTAILMVASGKS 127 Query: 107 CSVPEAA-------------------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 PEA L+ ++ V+ IA T+++I EKL IS +T Sbjct: 128 YLCPEALNIMMEDIQTPGDTKLLCPLQRLTLRERGVIQLIAEGYTSQEISEKLNISKRTV 187 Query: 148 YCHKHNIMMILNLKRINELVRH 169 H+ N M L + I L R Sbjct: 188 DVHRTNTMNKLKIHTIAGLTRF 209 >UniRef50_P58664 Uncharacterized response regulatory protein ygeK n=21 Tax=Escherichia coli RepID=YGEK_ECO57 Length = 210 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 8/127 (6%) Query: 50 NNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVP--------VTFVPRTITIIDFVAL 101 ++ ++ +T + ++ + I K C+ K + + T D V + Sbjct: 74 SHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHM 133 Query: 102 INGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 S + L+ ++ ++L IA+ T ++I L++S KT H+ NIM L++ Sbjct: 134 DCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVH 193 Query: 162 RINELVR 168 EL++ Sbjct: 194 SGIELIK 200 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 39/83 (46%) Query: 87 TFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 T++ +I+ E +L+ + +++ IA +T++I L +S+KT Sbjct: 126 TYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKT 185 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H+ ++M L L + +VR+ Sbjct: 186 IETHRMHLMARLGLHDVAGVVRY 208 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 92 TITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 I ++V G P LS ++ +VL IA +I L IS KT H+ Sbjct: 133 KKVIKNYVQQKQGLSLE-PRGLDLLSAREREVLQLIAEGHANREIAGHLYISPKTVEAHR 191 Query: 152 HNIMMILNLKRINELVRH 169 ++I L L EL ++ Sbjct: 192 NHIQKKLGLNGTAELTKY 209 >UniRef50_C4ZM15 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM15_THASP Length = 226 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 AA L+ +Q ++L I + + T++I +L +S+KT H+ IM L ++ I L+ Sbjct: 148 RAASVLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRAQIMERLGVRDIANLL 204 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 31/54 (57%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ ++L +A ++ + I L +S+KT H+ NI L + + EL+++ Sbjct: 153 LTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKY 206 >UniRef50_C4XSZ8 NarL family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XSZ8_DESMR Length = 226 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 A SL+R++ Q+L +A + I +L IS KT H+ NI L L + ELV Sbjct: 151 PRDPAYDSLTRREQQILRLLAEGRSVAAIATELFISKKTVENHRANICGKLGLANLAELV 210 Query: 168 RH 169 R+ Sbjct: 211 RY 212 >UniRef50_C9M9U6 Response regulator GacA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9U6_9BACT Length = 217 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 95 IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + D++ L + P ++ LS ++ VL+ +A +T++ I ++L IS T H+ + Sbjct: 134 VEDYLRLKRAVH-DGPARSMVLSEREKSVLALMAQGLTSKAIGDELGISKNTVDTHRRRM 192 Query: 155 MMILNLKRINELVRHQHIDYLV 176 M L + EL+RH + + L+ Sbjct: 193 MDKLGCNSVAELLRHAYREELL 214 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 29/161 (18%) Query: 38 HQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIF------SPFNIKRCLGKVPVTFV-- 89 H V++D M + QI P I+F + +K + Sbjct: 48 HTPDVVVMDVAMPGLNGIEAARQISAKLPHTAIVFLSMHSDESYVLKALKAGARAYLLKD 107 Query: 90 -PRTITIIDFVALINGSYCSVP--------------------EAAVSLSRKQHQVLSCIA 128 I +A+ G P ++ L+ ++ +VL +A Sbjct: 108 SAEHDLIAAVIAVSEGKAFFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLA 167 Query: 129 NQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +++ L +SL T H+ NI+ LNL EL+ + Sbjct: 168 EGKNNKEVAAILNLSLYTVETHRGNILQKLNLHSGAELILY 208 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 V + A LS ++ +VL A T ++I ++L +S KT ++H +M L R +ELVR Sbjct: 149 VQDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSELVR 208 Query: 169 H 169 Sbjct: 209 F 209 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS ++ +VLS IA +I E+L IS+KT +K+ IM LN K+ ++LV+ Sbjct: 152 LSDQEKKVLSLIAAGYANREIAEQLVISVKTVETYKYRIMEKLNCKKRSDLVKF 205 >UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9H4_DESAH Length = 217 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 35/55 (63%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +LS ++ +VL+ +A + + I + L IS +T H+ +IM L+L+ + +L+++ Sbjct: 153 TLSPREEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKY 207 >UniRef50_A5E9F2 Putative Transcriptional regulatory protein, luxR family n=2 Tax=Bradyrhizobium RepID=A5E9F2_BRASB Length = 206 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 90 PRTITIIDFVALINGSYCSVP-EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 PR++ D V + + P SL+ ++ +VL I+ + ++ ++ IS +TF Sbjct: 119 PRSLPGQDSVVIGTATTSRHPGRTNKSLTPREREVLELISAGHSNKEGALRMGISPRTFE 178 Query: 149 CHKHNIMMILNLKRINELVR 168 H+ M L + ELVR Sbjct: 179 SHRAEAMRKLGARNTAELVR 198 >UniRef50_UPI0001744DFC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744DFC Length = 224 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 P +L+ ++ +V ++ T+ I E+L + +KT H+ NIM L+L ELV Sbjct: 154 PNPLSTLTDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARLDLHTAEELVNF 213 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%) Query: 95 IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + +F +LI A L+ ++ +VL +A + DI ++L IS T H NI Sbjct: 219 LNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNI 278 Query: 155 MMILNLKRINELVRH 169 + L L E V + Sbjct: 279 LEKLQLHSRMEAVVY 293 >UniRef50_A9DUF6 Two-component response regulator n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DUF6_9RHOB Length = 209 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++H+V +A ++ +I ++ IS+KT H+ +M L + ELVR Sbjct: 141 ARLTPQEHRVFERVAAGLSNREIASEMDISVKTVEVHRARVMRKLEANSVAELVRF 196 >UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=Flavobacteriales RepID=A0M4P6_GRAFK Length = 205 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 68/163 (41%), Gaps = 21/163 (12%) Query: 28 QNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ--IERLKPVHVIIFSPFN----IKRCL 81 +E I++ + +II + V T+ +E + +I FS F+ +++ L Sbjct: 35 NGQELIELTRRKKPNLIITDIRMPVMDGIQATKEILEEFPNIKIIAFSMFDQDKAVQQML 94 Query: 82 GKVPVTFVPRTITIIDFVALINGSY---------------CSVPEAAVSLSRKQHQVLSC 126 ++ + ++ + + I + P++ L+ +Q ++L Sbjct: 95 EAGASGYILKNSSLKELLYAIRKVHEGEHYYDPNITVKQKSVSPKSKAVLTGRQREILKL 154 Query: 127 IANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 I T ++I ++L I T H+ N++ L L+ EL+R+ Sbjct: 155 IGQGRTNQEIADQLFIGKTTVETHRKNMIRKLGLQGAGELLRY 197 >UniRef50_C4XNR8 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XNR8_DESMR Length = 220 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 19/160 (11%) Query: 12 FTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQIER--LKPVHV 69 +K + S+G + I ++L + + + L IE+ L Sbjct: 65 LECIKELKSRGQEIKI-------LVLTMHGR----EYVKEAMAAGALGYIEKQALDSELF 113 Query: 70 IIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIAN 129 + R + P ++ L + P+ L+ ++ +VL + Sbjct: 114 VAI------RTVASGRRYMSPDNAEVLLDQLLSPTPQAASPDPYAVLTAREREVLKLLVR 167 Query: 130 QMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 T I L +S+KT HK ++M LNL ++LV + Sbjct: 168 GHTLTQIAGLLHLSVKTIDTHKTHVMEKLNLTHKSQLVDY 207 >UniRef50_Q475M9 Regulatory protein, LuxR:Response regulator receiver n=3 Tax=Cupriavidus RepID=Q475M9_RALEJ Length = 212 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 18/100 (18%) Query: 88 FVPRTITIIDFVALINGSY------------------CSVPEAAVSLSRKQHQVLSCIAN 129 FVPR + + V G L+ ++ VL +A Sbjct: 106 FVPRQRDLAEMVQAARGVMSGYLVFPTHTLDAARKLRLPSAGKLARLTARELTVLQYLAR 165 Query: 130 QMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 + + I +L IS KT HK NIM LN+ + E+V + Sbjct: 166 GHSNKTIGARLLISSKTVSTHKTNIMCKLNVGSVVEMVDY 205 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SL++++ +VL +A + ++ +L IS KT H+ N+M L I +LV + Sbjct: 149 SLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRANVMRKLGASSIVDLVHY 203 >UniRef50_A1SCH1 Regulatory protein, LuxR n=2 Tax=Nocardioides sp. JS614 RepID=A1SCH1_NOCSJ Length = 574 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 P V LSR++ +VLS + ++ +I E+L IS+KT H NI+ L ++ E + Sbjct: 498 PRDGVVLSRREQEVLSLVVEGLSNAEIAERLFISVKTAGHHVSNILTKLGVRSRTEATAY 557 >UniRef50_C7PDL7 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDL7_CHIPD Length = 210 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 34/74 (45%) Query: 95 IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 I D V LS ++ +++ C+A M T+ I L IS T H+ NI Sbjct: 129 INDQVFDYFRGKSVGKSGLQELSEREKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNI 188 Query: 155 MMILNLKRINELVR 168 M LN+K EL+R Sbjct: 189 MHKLNVKTSAELIR 202 >UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR family n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z8S5_9NEIS Length = 208 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 9/124 (7%) Query: 43 VIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI 102 VI+ T +V H+ ++ + + PF+ R L V + Sbjct: 78 VIMLTAHGDVPHAVAALKLGAID----FMEKPFDDGRLLAMVDQALLRDQQE-----RDR 128 Query: 103 NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 G + ++ L+ ++ +V+ I + I ++L IS+KT H+ + + +K Sbjct: 129 FGRLSRLNQSLALLTEREREVMQLILAGKLNKQIADELAISMKTVEVHRSRVFDKMGVKS 188 Query: 163 INEL 166 EL Sbjct: 189 AVEL 192 >UniRef50_C5A924 Two component transcriptional regulator, LuxR family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5A924_BURGB Length = 218 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 36/64 (56%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + P A +L+ ++ +VL I ++ DI ++ +++ T HK N M LN++ EL+ Sbjct: 147 TAPAPASALTPRELEVLRHIGCGLSVVDISRRMFVTVSTVSTHKRNAMDKLNIRSTVELI 206 Query: 168 RHQH 171 ++ H Sbjct: 207 QYIH 210 >UniRef50_C0A2L6 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2L6_9BACT Length = 240 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 14/121 (11%) Query: 49 MNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCS 108 M + F S + + ++ I+R F RT + + G Sbjct: 109 MQDAFDSGAHAFVAKDDAFDTLV---SIIRRVHSGEEFLF-SRT------MKEVTGGSQE 158 Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 P L+ ++ +VL I ++T++I +L +S KT ++ +M N+ + EL+ Sbjct: 159 TPR----LAPREREVLQGITKGLSTKEIGAQLFLSPKTVEVYRGRLMKKFNVTKGTELIH 214 Query: 169 H 169 H Sbjct: 215 H 215 >UniRef50_A0NVX8 Two component transcriptional regulator, LuxR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NVX8_9RHOB Length = 217 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 L+ ++ Q L+ I + ++I E L IS+KT H+ ++M LN+ + +L+ Sbjct: 151 LTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVPQLM 202 >UniRef50_A5P6H5 Two component transcriptional regulator, LuxR family protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P6H5_9SPHN Length = 216 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L+R++ QV I ++++++ + L IS +T H+ NIMM + + L+R Sbjct: 135 AMLTRRERQVAEGIGRGLSSKELAQPLGISFRTVEVHRANIMMKMGTPNMASLIR 189 >UniRef50_Q023R1 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023R1_SOLUE Length = 214 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +L+ +Q +L +A ++I E IS++T H+ +M L + EL R Sbjct: 149 ALTDRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRLMSRLGAHSVAELTRF 203 >UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding domain n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C34 Length = 234 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 89 VPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 V +T +A +G +LS ++ +V + +T + E ++IS KT Sbjct: 140 VSHKMTDRVLMAFSSGVQPRPDSGLHNLSDREFEVFQHLGEGKSTHQVAESMRISPKTVD 199 Query: 149 CHKHNIMMILNLKRINELVRH 169 H+ NI LNL+ + R+ Sbjct: 200 VHRMNIKNKLNLEDGAAVTRY 220 >UniRef50_Q31FU6 Two component transcriptional regulator, LuxR family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FU6_THICR Length = 232 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 P LS ++ QV+ +A T+DI + L+IS +T H+ NIM L + ELV + Sbjct: 158 PSRPKKLSVREKQVIKLVAEGYKTKDIADMLEISDRTVSKHRENIMTKLGMTASAELVNY 217 Query: 170 -QHIDYL 175 HI L Sbjct: 218 ASHIGLL 224 >UniRef50_D2Q428 Two component transcriptional regulator, LuxR family n=9 Tax=Actinobacteria (class) RepID=D2Q428_9ACTO Length = 213 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 SV E LS+++ +VL IA +++ +L IS+KT H +++ L L +EL Sbjct: 144 ASVDEDLDRLSQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVLRKLQLSNRHEL 203 Query: 167 VRH 169 R Sbjct: 204 TRW 206 >UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family n=1 Tax=Chromobacterium violaceum RepID=Q7NTU2_CHRVO Length = 206 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 9/124 (7%) Query: 43 VIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI 102 VI+ T +V H+ ++ L I PF+ L + Sbjct: 78 VIMLTAHGDVPHAVAALKLGALD----FIEKPFDDVHLLERAAAAVALDEQN-----RQR 128 Query: 103 NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 +G V A L+ ++ +V+ I + I E+L IS+KT H+ + + +K Sbjct: 129 HGHQRKVSAALALLTEREREVMQLILAGKLNKQIAEELSISMKTVEVHRSRVFEKMGVKS 188 Query: 163 INEL 166 EL Sbjct: 189 AVEL 192 >UniRef50_C7LQH4 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQH4_DESBD Length = 222 Score = 60.0 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 94 TIIDFVALINGSYCSVPEAAV-SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 +++ ++ I+G +A+ SLS ++ QV+ +A +T E+I KL +S KT H++ Sbjct: 135 SVLRRLSDISGRKAKTVDASYGSLSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLNHRY 194 Query: 153 NIMMILNLKRINELVRH 169 IM L +K VRH Sbjct: 195 AIMTKLGIKSPVAFVRH 211 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 60.0 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 35/55 (63%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +LS+++ QV++ +A MT +I L+IS+KT H+ +++ L L+ +++ R Sbjct: 149 TLSKREFQVMTHLAQGMTNREIAGVLQISVKTVDTHRSHVLKKLELRNNSDITRF 203 >UniRef50_B8DW58 Response regulator of two-component system n=39 Tax=Actinobacteridae RepID=B8DW58_BIFA0 Length = 236 Score = 59.6 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 104 GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 G + SLS ++ +V+ IA T +++ +L IS+KT H N++ L L Sbjct: 164 GDTVAHDAELDSLSTREQEVMRLIARGYTYKEVGAELFISVKTVETHVSNVLRKLQLSNR 223 Query: 164 NELV 167 NEL Sbjct: 224 NELT 227 >UniRef50_Q2RU94 Sensor protein n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RU94_RHORT Length = 1483 Score = 59.6 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + SLS +Q +++ + +++I L IS +T H+ IM L +K + LV Sbjct: 1409 AAKARLASLSARQREIMEMVLAGQPSKNIAADLGISQRTVESHRALIMKKLGVKSLPALV 1468 Query: 168 R 168 R Sbjct: 1469 R 1469 >UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Tax=Firmicutes RepID=LIAR_BACSU Length = 211 Score = 59.6 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHI 172 SL++++ ++L IA T ++I E+L I++KT H NI+ L++ + + H Sbjct: 147 HESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHR 206 Query: 173 DYLV 176 ++LV Sbjct: 207 NHLV 210 >UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR family n=18 Tax=cellular organisms RepID=B4SLZ0_STRM5 Length = 217 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 19/148 (12%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQIERLKP-VHVIIFSPFN-----IKRCLGKVPVTFV--- 89 Q V++D M + + +I L P +I+ + + ++ + Sbjct: 53 QPDVVLMDLQMPRLDGVEAIVRIRALDPRARIIVLTTYRGDVRAVRALQAGASAYLLKDM 112 Query: 90 PRTITIIDFVALINGSYCSVPEAAVS----------LSRKQHQVLSCIANQMTTEDILEK 139 R + + G +P A + LS ++ +VL +A ++ + I E+ Sbjct: 113 LRHELVDTIRMVAGGRRAPIPPAVAASIAAHVVEDRLSPRETEVLRHVAGGLSNKRIGER 172 Query: 140 LKISLKTFYCHKHNIMMILNLKRINELV 167 ++IS +T H ++M L + V Sbjct: 173 MQISEQTVKAHMKSLMDKLGVGDRTHAV 200 >UniRef50_A0KNC9 Transcriptional regulatory protein FixJ n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KNC9_AERHH Length = 203 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 75/190 (39%), Gaps = 29/190 (15%) Query: 2 FLIITRDTMFFTAMKNIL---SKGNVVHIQNEEEI--DVMLHQNAFVIIDTLMNNVFHSN 56 ++ D +++ +L + + + E +V LHQ A +I+D M + Sbjct: 9 LYLVDDDEAVLDSLRFMLESCDERQLFSFADGERFLAEVDLHQPACLILDCRMPGLSGPE 68 Query: 57 FLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVA---------------- 100 +++ + I+F + G+VP+ + +DF+ Sbjct: 69 VQQRLKAAQSPIAILFLTGH-----GEVPLAVESLKLGAVDFLQKPVQLAPLLAAIERAE 123 Query: 101 ---LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 L + + A L+ ++HQ+L IA + I + L IS++T + ++M Sbjct: 124 QATLSAATRFAQLAAYQRLTPREHQLLQLIARGHKNQQIAQDLCISVRTVEVCRASLMKR 183 Query: 158 LNLKRINELV 167 L + + EL+ Sbjct: 184 LEVDSLAELM 193 >UniRef50_C1ZGK9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGK9_PLALI Length = 217 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 A SLS ++ +VL IA ++I KL ISLKT +K M L+L+ ELVR Sbjct: 150 AESLSERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVRF 206 >UniRef50_Q47I89 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q47I89_DECAR Length = 203 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L+ ++ +V++ + +I EKL IS++T HK ++M L++ + +LVR Sbjct: 145 LTPREQEVMNLVVGGYHNREIAEKLGISVRTVEVHKAHVMSKLDVDSVADLVR 197 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 20/150 (13%) Query: 40 NAFVIIDTLMNNVFHSNFLTQIERLKPV-HVIIFS----PFNIKRCLGKVPVTFVPRTI- 93 +++D M +V + I+ P V+I S P I L V +V + + Sbjct: 70 PDVILMDLNMPDVGGLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQ 129 Query: 94 -----TIIDFVALINGSYCS------VPEAAVS---LSRKQHQVLSCIANQMTTEDILEK 139 T ID V C+ P++ S L+ ++ +L +A + +++ + Sbjct: 130 PEEIKTAIDAVMRGEQYLCTGAAGSLSPQSQTSREALTGREQTILLELAQGKSNKEVAQA 189 Query: 140 LKISLKTFYCHKHNIMMILNLKRINELVRH 169 L IS++T H+ NI L + L R+ Sbjct: 190 LDISVRTVETHRKNIKRKLGISSTAGLTRY 219 >UniRef50_A4ABN5 Two-component system response regulator n=1 Tax=Congregibacter litoralis KT71 RepID=A4ABN5_9GAMM Length = 222 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 6/98 (6%) Query: 71 IFSPFNIKR-CLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIAN 129 IFS + R L K+P+ + + +I + +L+ ++ QVL+ I Sbjct: 118 IFSKLSPARDMLAKLPLILMGERYVAPELTDIIRKG-----QQGETLTGRERQVLNMIVM 172 Query: 130 QMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + ++I ++L IS KT H+ ++M+ L + + +L+ Sbjct: 173 GKSNKEIAQELNISPKTVEKHRGSVMLKLEVHSVAQLM 210 >UniRef50_Q0S3P7 Response regulator, two-component system n=11 Tax=Actinomycetales RepID=Q0S3P7_RHOSR Length = 228 Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 L+ ++ +VL +A ++ I E+L IS T H NIM L++ R E V Sbjct: 168 LTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAV 219 >UniRef50_Q1LFI0 Two component transcriptional regulator, LuxR family n=2 Tax=Cupriavidus metallidurans CH34 RepID=Q1LFI0_RALME Length = 215 Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 28/176 (15%) Query: 22 GNVVHIQNEEEIDVMLHQN--AFVIIDTLMNNVFHS-NFLTQIERLKP-VHVIIFS---- 73 VV + EI L+ VI D +N + +I+R++P V VI+FS Sbjct: 31 SEVVTASSVNEILNALNDPEVGIVITDFSLNEAGDGLQLIGRIKRMRPDVAVIVFSMNAS 90 Query: 74 PFNIKRCLGKVPVTFVPRTITIIDF-----VALINGSYCS--------------VPEAAV 114 P ++ + FV +T D V L + + P+AA+ Sbjct: 91 PPAVRDMIAAGASAFVSKTCGTRDVAEACRVVLAGRKFVAPASLAHLLDQDDGGTPQAAL 150 Query: 115 S-LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS ++ +VL +A ++ +I + S KT K M L L EL R+ Sbjct: 151 QRLSPREREVLRLLAQGLSLREIAARFNRSRKTISVQKCAAMAKLGLTHDMELGRY 206 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 58.9 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ +V+ ++ + + I +L +S+KT H+ M L L+ +LVR+ Sbjct: 153 LTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRY 206 >UniRef50_Q0K3Q8 Response regulator, NarL-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K3Q8_RALEH Length = 219 Score = 58.9 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +L+R++ Q+L IA T DI +L IS T H+ N+M L+L E+V + Sbjct: 147 ATLTRRELQILMLIARGATAGDIAAQLDISPLTARKHRENLMRKLDLHNTAEVVAY 202 >UniRef50_B4T4T3 EsrB n=38 Tax=Enterobacteriaceae RepID=B4T4T3_SALNS Length = 212 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 L+ ++ QVL I T I EKL IS+KT H+ N+M L + ++ EL+ Sbjct: 147 HQLLTLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELL 201 >UniRef50_B3PWQ9 Two-component response regulator nitrogen regulation protein n=7 Tax=Bacteria RepID=B3PWQ9_RHIE6 Length = 222 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Query: 90 PRTITIIDFVALINGSYCSVPEAAVS---------LSRKQHQVLSCIANQMTTEDILEKL 140 R T+I + L G A S L+ ++HQVL+ + + + + I +L Sbjct: 107 LREETLIAAINLAMGQRRPGRSIADSESVAARLRQLTDREHQVLTGVLDGLQNKMIAYQL 166 Query: 141 KISLKTFYCHKHNIMMILNLKRINELVR 168 IS +T H+ N+M + + + EL+R Sbjct: 167 GISSRTVEVHRANVMAKMGARNLAELMR 194 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +L+R++ +L CI M ++I +L +S++T H+ N+ L ++ LV++ Sbjct: 166 ALTRRERDILGCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLGIEGRAGLVKY 220 >UniRef50_Q021D5 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q021D5_SOLUE Length = 210 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 68/193 (35%), Gaps = 25/193 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-----IDVMLHQNAFVII-DTLMNNVFHS 55 L++ ++ + +L + + E E + + + V++ D M ++ + Sbjct: 8 VLLVDDHSLVRRGFRRMLEDDPAIVVVGEAEDGHQAVQLAGELHPRVVVMDFAMPSMNGA 67 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRT----ITIIDFVALINGSY 106 I R P I+ + ++ CL ++ + + + G Sbjct: 68 VAARHILRTAPETAILILSMHAEASYVRTCLEAGVRGYLLKNALDLEMVAAVKQVAAGKQ 127 Query: 107 ----------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 A L+ ++ +VL I + + ++I L +S T H+ NIM Sbjct: 128 VLDRRLGALDLPSGAAPAGLTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQ 187 Query: 157 ILNLKRINELVRH 169 L + ELV + Sbjct: 188 TLGIHNTAELVVY 200 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 11/79 (13%) Query: 95 IIDFVALI----NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 I D++ L GS C LS ++ VL + + I E+L IS T H Sbjct: 135 IGDYLRLTENEEQGSDCP-------LSERELDVLKLLVKGCNAKQIAEQLSISKNTVDTH 187 Query: 151 KHNIMMILNLKRINELVRH 169 + +I+ L + EL R+ Sbjct: 188 RRHILDKLGCNSMAELTRY 206 >UniRef50_Q7UUD3 Probable transcriptional regulatory protein fixJ n=1 Tax=Rhodopirellula baltica RepID=Q7UUD3_RHOBA Length = 474 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 E L+ ++ QVL I + I +L+IS KT H+ N+M L+ + + EL Sbjct: 402 AEAKEKLKRLTIRERQVLEQIVEGRMNKVIANRLEISEKTVERHRSNLMKKLDAQSVAEL 461 Query: 167 VR 168 V+ Sbjct: 462 VK 463 >UniRef50_C3BGJ6 Two component transcriptional regulator, LuxR n=5 Tax=Firmicutes RepID=C3BGJ6_9BACI Length = 201 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 V LS ++ +VL + + +I ++L IS+KT HK ++ LNL + +ELV++ Sbjct: 133 NPYVILSPREREVLQFLVKGFSLSEIAQELTISIKTVDTHKTRMLNKLNLSKKSELVQY 191 >UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas RepID=Q4ZXS3_PSEU2 Length = 920 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 11/123 (8%) Query: 54 HSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITI------IDFVALINGSYC 107 + L PFN LG+ P + + + + + Sbjct: 790 DEARALLLRSLPAASGGALMPFN--ALLGEHPEWLHEQLVQLPPCRVQAALLEKLPACCT 847 Query: 108 SVPEAAV---SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRIN 164 PEAA LS ++ VL IA + ++I E+L ISL T H +I L ++R Sbjct: 848 PSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRT 907 Query: 165 ELV 167 + V Sbjct: 908 QAV 910 >UniRef50_Q391P2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q391P2_BURS3 Length = 216 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%) Query: 97 DFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 + + G +LS ++ ++L I +T + I E++ S T H+ NI Sbjct: 133 NLLRRARGQAAKPTTPLAALSPREIEILRMIGEGLTKQQIAERIGHSANTVEAHRTNIKR 192 Query: 157 ILNLKRINELVRHQHID 173 L L EL+R ++ Sbjct: 193 KLGLDNNAELIRFSALN 209 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 58.9 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 31/55 (56%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ +VLS IA + +++ ++ + ++T H+ +M L++ + L ++ Sbjct: 169 KLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKY 223 >UniRef50_B1T1G9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T1G9_9BURK Length = 204 Score = 58.5 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 21/159 (13%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTI 93 + +I+D ++ + + + ++ V +++FS ++ + RC +V ++ Sbjct: 46 KPDLLIVDIDLDGMDGIDLIQRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNKSE 105 Query: 94 TIIDFVALIN----GSYC-----------SVPEAA-VSLSRKQHQVLSCIANQMTTEDIL 137 + ++ N G +C S P AA LS ++ VL +A ++ ++I Sbjct: 106 DVTHVLSAANAVLAGFHCFPLDINAMASGSGPHAAFAMLSERELTVLRYLAKGLSNKEIG 165 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 + L +S KT HK NI+ L + +L +L+ Sbjct: 166 DSLSLSNKTISTHKANILAKLGFTNVVDLAAFAKAHHLI 204 >UniRef50_C4KBL1 Two component transcriptional regulator, LuxR family n=8 Tax=Betaproteobacteria RepID=C4KBL1_THASP Length = 212 Score = 58.5 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L++++ +VL I + I + L IS+KT H+ +M + + ELV+H Sbjct: 148 LTQREREVLELIIVGKLNKQIADVLGISIKTVEVHRARVMEKMGAHSLAELVQH 201 >UniRef50_D1C6P4 Transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6P4_SPHTD Length = 875 Score = 58.5 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 79 RCLGKVP-VTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDIL 137 R LG P V V R + + + G S + L+R++ +VL +A ++ +I Sbjct: 766 RDLGAAPMVAHVSRRLRAVGARGIPRGPRPSTRQHPAGLTRREAEVLDLMAQGLSNTEIA 825 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELVR 168 +L +S KT H +I+ LN+ +E +R Sbjct: 826 GRLYLSPKTVEHHVSSILTKLNVSSRHEAIR 856 >UniRef50_UPI00016AA17B two component transcriptional regulator, LuxR family protein n=2 Tax=Burkholderia oklahomensis RepID=UPI00016AA17B Length = 97 Score = 58.5 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 + PE AV+LS ++ QVL+ + T+ I E L +S++T ++ +M L + I L Sbjct: 23 AAAPEPAVTLSPRERQVLNRVVRGRTSARIAEWLHLSVETVETYRLRLMRKLGVGDITGL 82 Query: 167 VR 168 +R Sbjct: 83 MR 84 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + LS ++ ++ S +A T ++ +KL IS+KT H+ I L + ELV Sbjct: 145 AEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKIYAKLGVNSRAELV 204 >UniRef50_B1M303 Transcriptional regulator, LuxR family n=2 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M303_METRJ Length = 252 Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 11/93 (11%) Query: 90 PRTITIIDFVALINGSYCSVP-----------EAAVSLSRKQHQVLSCIANQMTTEDILE 138 + +AL+ G+ C VP LS ++ VL + + +++ Sbjct: 105 SQQELSAALLALVKGAACLVPPKRLGAIKAGQSCNFGLSPREIDVLRFLCAGFSNKEVAR 164 Query: 139 KLKISLKTFYCHKHNIMMILNLKRINELVRHQH 171 +L +S++T H+ N+ R+ ELV H Sbjct: 165 RLALSVRTVETHRLNLRRKTQTGRLKELVSLAH 197 >UniRef50_C6B715 Transcriptional regulator, LuxR family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B715_RHILS Length = 222 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 6/88 (6%) Query: 86 VTFVPRTITIIDFVALINGSYCSVPEAA------VSLSRKQHQVLSCIANQMTTEDILEK 139 VTF+P+ +N S + EA ++L+ ++ QV+ + + + + K Sbjct: 115 VTFLPKQDDPAVIAEEVNASIRAFNEANRLEAYFLTLTPRERQVMKFVVEGLLNKQVAFK 174 Query: 140 LKISLKTFYCHKHNIMMILNLKRINELV 167 L IS T H+ +M +N + + +L+ Sbjct: 175 LNISEITVKAHRGRLMRKMNARTLPDLL 202 >UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms RepID=B9PAD6_POPTR Length = 326 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 100 ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILN 159 + G +L+ ++ +L I +DI +L +S++T H+ N+ L Sbjct: 245 RIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGVSVRTVETHRLNLKRKLG 304 Query: 160 LKRINELVRH 169 ++ ELV++ Sbjct: 305 IEGRAELVKY 314 >UniRef50_Q3JAH3 Two component transcriptional regulator, LuxR family n=2 Tax=Nitrosococcus oceani RepID=Q3JAH3_NITOC Length = 201 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 SL+R++ QV +A + I +L IS++T H+ NIM L ++ + ++VR Sbjct: 141 SLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANIMEKLKVRSLADIVR 194 >UniRef50_A6T252 DNA-binding response regulator, LuxR family n=1 Tax=Janthinobacterium sp. Marseille RepID=A6T252_JANMA Length = 248 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 34/57 (59%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +++ ++ Q+L +A ++++I + L++S+ T HK N+M L+L EL R+ Sbjct: 185 DQAVTPREQQILKLVAAGKSSQEIADTLELSVFTVRKHKQNLMAKLSLHNAVELTRY 241 >UniRef50_Q5E1C3 Two component response regulator n=17 Tax=Gammaproteobacteria RepID=Q5E1C3_VIBF1 Length = 205 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 93 ITIIDFVALINGSYCS--VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 I I + +A Y S + +SL+ ++ +VL I M + + + + +SL+T H Sbjct: 120 IAIKNGLAASEKRYKSQDAHRSYLSLTAREQEVLKLIVQGMKNQQMADAMCVSLRTIEVH 179 Query: 151 KHNIMMILNLKRINELV 167 + N+M L + + +L+ Sbjct: 180 RSNLMKKLGVNSVVDLI 196 >UniRef50_C6Y2F0 Response regulator receiver n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y2F0_PEDHD Length = 206 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 21/151 (13%) Query: 37 LHQNAFVIIDTLMNNVFHSNFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPR 91 LH+ +++D + + + ++++L P V V+ S FN IK + +V + Sbjct: 48 LHEPDVILMDVNLPDKSGIDLCKEVKQLYPSVAVLGLSTFNQQAIIKNMIDNGASGYVLK 107 Query: 92 TITIIDFVALINGS---------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDI 136 T + + IN P+ + ++R++ +VL IA +T +I Sbjct: 108 NATKEELLEAINAVSKGKVYYSQEAFSSLRIPAPD-QLLITRREKEVLLLIAEGLTNAEI 166 Query: 137 LEKLKISLKTFYCHKHNIMMILNLKRINELV 167 EKL IS+ T H+ +++ N+K L+ Sbjct: 167 AEKLFISIPTVNTHRKSLIEKFNVKNTAMLI 197 >UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFU2_9SPHI Length = 219 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + P V L++++ +VL+ I MTT++I ++L I+ T H+ N++ L +K EL+ Sbjct: 150 AKPNPQVKLTKREKEVLALIGKGMTTKEISKQLFIADTTVETHRRNLIDKLEVKNSKELI 209 Query: 168 RH 169 + Sbjct: 210 LY 211 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L++++ +L I + +I + L IS++T H+ NIM L +K ELVR Sbjct: 160 LTKREKGILKMITDGKNNREIADGLGISIRTIETHRANIMKKLKVKNAVELVR 212 >UniRef50_B0MWF4 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWF4_9BACT Length = 203 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 P A + LS ++ +VL+ IA + + I ++L+I L T H+ NIM L ++ + LV Sbjct: 127 APAANL-LSVRETEVLTLIAQGLLNKQIADRLQIGLTTVISHRRNIMQKLGVQSVAALV 184 >UniRef50_Q2NB98 Sensor histidine kinase n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NB98_ERYLH Length = 225 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 33/54 (61%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 +LS +Q +V + +A+ + +++ +L +S KT H+ +M LNLK +LVR Sbjct: 165 TLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLVR 218 >UniRef50_Q7NMJ2 Two-component response regulator n=3 Tax=Gloeobacter violaceus RepID=Q7NMJ2_GLOVI Length = 301 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 A+SL++++ ++L IA + T +I + L IS +T H+ +M L + LVR Sbjct: 225 AISLTKREQEILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVR 280 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%) Query: 88 FVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 +V + I + V LS ++ +VL + + +I E+L +S+KT Sbjct: 145 YVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLGRGFGSREIAEELSLSVKTV 204 Query: 148 YCHKHNIMMILNLKRINELVRH 169 H+ +I L K E+VR Sbjct: 205 ETHRAHIKEKLGFKEAGEMVRF 226 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 112 AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +A +LS ++ VL IA + ++I + +S+K+ +K L L+ E++R+ Sbjct: 152 SAEALSPRETDVLRLIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIRY 209 >UniRef50_Q2YB36 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q2YB36_NITMU Length = 217 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SL+ + +VL I + ++++I + L S+KT H+ NI LNLK +L+R+ Sbjct: 155 SLTPSEFEVLHLIGSGHSSQEIAKLLSRSIKTIETHRFNIRTKLNLKDGADLIRY 209 >UniRef50_Q89XB5 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89XB5_BRAJA Length = 207 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L++++ +VL I+ + + +++IS +TF H+ M L + +LVR Sbjct: 144 QKRLTKREREVLRLISEGYSNKQGALRMQISPRTFESHRAEAMRKLGARNTADLVR 199 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + E LS ++ QV + + + ++L IS KT HK +M L L +LV Sbjct: 157 AAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMHKLALDNDADLV 216 Query: 168 RH 169 R+ Sbjct: 217 RY 218 >UniRef50_B0UG66 Two component transcriptional regulator, LuxR family n=2 Tax=Methylobacterium sp. 4-46 RepID=B0UG66_METS4 Length = 244 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Query: 51 NVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 N + F I +++P +I + G++ +VPR + D V + ++P Sbjct: 89 NCLSAGFHGFIYKMQPDSELIRA--ITDLLSGRI---YVPRWLADGDDVKPNTPASIALP 143 Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINE 165 + L+ +QH++L +A M+ ++I L I+ T H ++ L + E Sbjct: 144 SDRLKLTPRQHEILPLLAQGMSNKEIANSLNIAAGTAKIHTAALLRALGARNRTE 198 >UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR family n=16 Tax=Proteobacteria RepID=B2JVJ8_BURP8 Length = 219 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 ++ ++P + + N+++ L V + +T F AL G +P +LS ++ Sbjct: 106 LKDMEPEELCL----NLQKALQGTAV--LSEAVTGKLFHALSAGQ--PLPANQSNLSVRE 157 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQH 171 +VL + M ++I KL IS+ T H +++ L+L E V H Sbjct: 158 QEVLDYLVEGMCNKEIARKLDISVGTVKVHVKHLLHKLDLHSRVEAVVWHH 208 >UniRef50_Q1QT34 Two component transcriptional regulator, LuxR family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT34_CHRSD Length = 211 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 83/197 (42%), Gaps = 30/197 (15%) Query: 3 LIITRDTMFFTA-MKNILSKGNVVHIQNEEE-----IDVMLHQNAFV-IIDTLMNNVFHS 55 L++ D + A + ++++ +H+ EE +D V +ID + + Sbjct: 4 LLLAEDHLLVRAALAHLINAFQGIHVVAEEACGHEILDAARIHPVDVALIDAALLPIQDW 63 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITI-----------IDFV 99 + + Q++ ++P +++++ S + ++R + FV + + + Sbjct: 64 DLIRQLKTVRPGINILVTSSYLSDRYVERLMEAGACGFVHKNAAVNELETAIRQAAANRR 123 Query: 100 ALINGSYCS-------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 L G S P + +L+R+Q ++L I + + I E+L +S+KT H+ Sbjct: 124 VLYPGVDVSGLAATEQAPSSVPALTRRQQEILKLIVDGCRSRTIAEQLDLSVKTVEAHRR 183 Query: 153 NIMMILNLKRINELVRH 169 IM + + LV+ Sbjct: 184 EIMRRVGKQNSAGLVKE 200 >UniRef50_Q12FM5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=Q12FM5_POLSJ Length = 224 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 P LS ++ ++L + T + +KL S+KT H+ ++ L LK +L Sbjct: 154 AGAPSPIAGLSEREFEILHLLGLGFGTRQVADKLNRSIKTIETHRASLKEKLQLKSGADL 213 Query: 167 VRH 169 VR Sbjct: 214 VRF 216 >UniRef50_B8ICC9 Transcriptional regulator, LuxR family n=4 Tax=Rhizobiales RepID=B8ICC9_METNO Length = 123 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 80 CLGKVPVTFVPRTITIIDFVALINGSYCSVPEA--AVSLSRKQHQVLSCIANQMTTEDIL 137 L VP + R D V + + P+A V L+ ++ +VLS +A + + I Sbjct: 23 LLADVPGLRLARPGEAADAVLTLPPGSAATPDAGPDVGLTPREIEVLSLLAEGASNKAIA 82 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +L IS+ T H +++ L+ + V H Sbjct: 83 RRLGISVHTAKFHVGSLLDKLDATGRTDAVAH 114 >UniRef50_A8L8A4 GAF modulated transcriptional regulator, LuxR family n=1 Tax=Frankia sp. EAN1pec RepID=A8L8A4_FRASN Length = 285 Score = 57.7 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 91 RTITIIDFVALINGSYCSVPEAA-VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 R + + D + + A LS ++ VL +A M+ + +L +S +T Sbjct: 198 RIVAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETARRLAVSPETVKA 257 Query: 150 HKHNIMMILNLKRINELV 167 + +IM L + V Sbjct: 258 YLRSIMNKLGVHNRTAAV 275 >UniRef50_UPI0001C31456 two component transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31456 Length = 213 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 P+ L+ +H+VL +A MT I E+L +S +T H I +++R ++L R Sbjct: 146 APDVRKKLTATEHEVLRLVAQGMTDRQIAERLFVSPRTVQNHLARIREKTSMRRRSDLAR 205 Query: 169 H 169 Sbjct: 206 W 206 >UniRef50_Q3SW32 Two component transcriptional regulator, LuxR family n=8 Tax=Bradyrhizobiaceae RepID=Q3SW32_NITWN Length = 216 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 15/112 (13%) Query: 57 FLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSL 116 L +E+ VI I+R V V R + D A G + L Sbjct: 105 ALDFLEKPFSSDVI------IERVRAAVKVWREARG-SERDGFANFPGRHL--------L 149 Query: 117 SRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 + ++ +VLS +A + ++ +L IS +T H+ IM L K +L+R Sbjct: 150 TCREREVLSQVARGASNKEAGRRLGISPRTVEVHRARIMDKLGAKNTADLIR 201 >UniRef50_D0IVR3 Two component transcriptional regulator, LuxR n=90 Tax=Bacteria RepID=D0IVR3_COMTE Length = 217 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%) Query: 74 PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSR---KQHQVLSCIANQ 130 PFN + LG V ++D + L++ ++ QVL I Sbjct: 109 PFNEEELLGLV--------ERMLDHAREAFTGHQQAASRDALLAKLTGREAQVLERIVAG 160 Query: 131 MTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 + I + L IS+KT H+ NIM LN + +L++ Sbjct: 161 RLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLK 198 >UniRef50_B0NRV8 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NRV8_BACSE Length = 183 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 P+ LS +Q +V+ + + +I EKL ISL T H+ N + + + E +R Sbjct: 115 APKFNSKLSDRQIEVMRMLYDGKNDSEIAEKLFISLNTVNNHRKNSFRKVGVHSMAEFMR 174 Query: 169 H 169 + Sbjct: 175 Y 175 >UniRef50_A5LFV2 FimR protein n=3 Tax=Porphyromonas gingivalis RepID=A5LFV2_PORGI Length = 227 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 31/54 (57%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L++++ +V+ + + + ++ EK+ +S +T H+ NI+ L EL+R+ Sbjct: 164 LTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFSNAAELIRY 217 >UniRef50_A9EQD2 Putative two-component system response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EQD2_SORC5 Length = 212 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%) Query: 87 TFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 T V ++ AL + + +LS ++ QVL +A ++ +++ +L IS+KT Sbjct: 121 TAVSPDVSAAMVRALQRRDAAARGDMVAALSDRERQVLRLLAMGLSAKEVAAQLSISVKT 180 Query: 147 FYCHKHNIMMILNLKRINELVR 168 H+ + + + +L R Sbjct: 181 VETHRARLCAKVATHSVADLTR 202 >UniRef50_C5BZU7 Two component transcriptional regulator, LuxR family n=43 Tax=Actinobacteridae RepID=C5BZU7_BEUC1 Length = 232 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 104 GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 G + + L+ ++ +V+ IA T ++ +L IS+KT H ++ L L Sbjct: 160 GGDVATGDELDKLTAREREVMRLIARGYTYREVASELFISIKTVETHVSAVLRKLQLSSR 219 Query: 164 NELVRH 169 +EL R Sbjct: 220 HELTRW 225 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 109 VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 + SL++++ +V +A T + I + L IS KT H+ N+M L+L E+ Sbjct: 149 AADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTVDKHRTNLMKKLDLHSAREVSN 208 Query: 169 H 169 Sbjct: 209 F 209 >UniRef50_C1DGA2 Transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=C1DGA2_AZOVD Length = 188 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 AAV+L+ ++ ++ + I N +T ++I KL IS +T H+ +M L K +LV Sbjct: 125 RAAVNLTPREREISAHIVNGLTCKEIGRKLGISHRTVEVHRARLMKKLAAKNSADLV 181 >UniRef50_A6AS40 Two component response regulator n=5 Tax=Vibrio harveyi group RepID=A6AS40_VIBHA Length = 198 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 14/145 (9%) Query: 37 LHQNAFVIIDTLMNNVFHSNFLTQI-ERLKPVHVIIFS-----PFNIKRCLGKV------ 84 L V++D+ M ++ + + E+L P+ VI + P + Sbjct: 47 LSAPGCVLLDSRMPDMRGQDVHQMMNEKLSPISVIYLTGHGDIPMAVDALKDGALDFFQK 106 Query: 85 PVTFVPRTITIIDFVA--LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 PV + + D +A L NG + SL++++ +VL + M +++ + L + Sbjct: 107 PVDGNALVMAVDDAMAQSLKNGEKLGAKQVLQSLTKREREVLGLVVKGMKNQEMADLLCV 166 Query: 143 SLKTFYCHKHNIMMILNLKRINELV 167 SL+T H+ N+M L + + L+ Sbjct: 167 SLRTIEVHRSNVMKKLEAESLAVLI 191 >UniRef50_A1BJU3 Two component transcriptional regulator, LuxR family n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BJU3_CHLPD Length = 203 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 112 AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ +VL C+ +T+ I +L IS +T H+ +IM LN++ L + Sbjct: 139 CEGQLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIMEKLNIRTATGLAGY 196 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 87 TFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 F P +II L N + A +L++++ +VL ++ ++T+ I +KL IS++T Sbjct: 127 YFSPDIYSII-LNGLANPELVKASQIAETLTKRELEVLKEVSMGLSTKLIADKLFISVRT 185 Query: 147 FYCHKHNIMMILNLKRINELVR 168 H+ N+M L++ EL++ Sbjct: 186 VETHRINLMKKLDVHNSAELIK 207 >UniRef50_Q024Q1 Transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024Q1_SOLUE Length = 228 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +L+ ++ QVL IA +T++ +L IS KT H+ I+ L + +VR+ Sbjct: 165 ALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRY 219 >UniRef50_B8L629 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L629_9GAMM Length = 225 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 100 ALINGSYCSVPEA-AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 A + S PE L++++ +VL IA ++ +I +L+ S +T KH+ M L Sbjct: 131 ADVERQLASRPEGGEAHLTKREAEVLRLIAEGLSQTEIAAQLQRSRQTISTQKHSAMRKL 190 Query: 159 NLKRINELVRH 169 ++R E+ + Sbjct: 191 GMQRPAEIFEY 201 >UniRef50_P37740 C4-dicarboxylate transport transcriptional regulatory protein dctR n=6 Tax=Proteobacteria RepID=DCTR_RHOCA Length = 197 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 31/54 (57%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 SLS ++ +V++ + + + I E+L I+++T H+ ++ + + I +L R Sbjct: 142 SLSAREAEVMALMLEGLMNKQIAERLGIAMRTVEVHRSRVLAKMGARNIADLAR 195 >UniRef50_B8HS28 Transcriptional regulator, LuxR family n=38 Tax=cellular organisms RepID=B8HS28_CYAP4 Length = 100 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SLS ++ QV+ IA ++ + I EKL+IS +T H NI+ LVR Sbjct: 9 NQSLSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRVALVRW 65 >UniRef50_Q11XC0 Fimbrial Z protein; probable signal transducer n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XC0_CYTH3 Length = 212 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%) Query: 78 KRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDIL 137 + L V + + + D ++ + + + S ++ +VL I + E I Sbjct: 111 EELLHAVQQVYTNKEYYVSDVTQVLLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIA 170 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELV 167 + L IS KT H+ NIM +K+ EL+ Sbjct: 171 DILFISEKTIATHRRNIMKKAGVKKSTELI 200 >UniRef50_Q46V74 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46V74_RALEJ Length = 206 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 +L+ K+ ++ +A+ ++ I E L IS++T H+ + L + + ELVR Sbjct: 142 ATLTPKEREIAEHVASGKSSRQISEALNISVRTVENHRARVTEKLCITSVAELVR 196 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 24/155 (15%) Query: 39 QNAFVIIDTLMNNVFHSNFLTQIERLKP-VHVIIFS----PFNIKRCLGKVPVTFVPRTI 93 Q V++D M I + P +++ S P I++ L ++ + Sbjct: 49 QPDVVLLDIAMPGPSGIEVARTIRQFDPNTKILVLSSVDRPEIIEQALAAGVNGYLLKDF 108 Query: 94 TIIDFVA----LINGSYCSVPE---------------AAVSLSRKQHQVLSCIANQMTTE 134 + + + +++G P+ + L+ +Q ++L +A+ TT+ Sbjct: 109 VLAELLQALEMVLHGERFLSPKIREMSRFSDAEGTSGSGTQLTARQTEILRLVASGRTTK 168 Query: 135 DILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +I L IS KT H+ +M + + + L R Sbjct: 169 EIARDLGISPKTVEFHRSRLMERIGVHDVTGLTRF 203 >UniRef50_C1SGH5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGH5_9BACT Length = 193 Score = 57.3 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 11/147 (7%) Query: 40 NAFVIIDTLMNNVFHSNFLTQIE-RLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDF 98 ++IID L + V L ++ + V++ + V + + Sbjct: 48 PDYIIID-LFSRVADEEILNLLKNKYDTSKVVVLTTKQNDMLTYFSYTYGVRHYVYLDAD 106 Query: 99 VALINGSYCSV---------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 V I C V + SL+ ++ ++L IA+ T+ +I E L IS T Sbjct: 107 VDEIIAGLCEVLGGLSENNCKKRNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDT 166 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H++ ++ LNL LV + + LV Sbjct: 167 HRNKMLQKLNLANSASLVHYAFVSGLV 193 >UniRef50_D1BUX3 Transcriptional regulator, LuxR family n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUX3_XYLCX Length = 937 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 101 LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNL 160 L G + P+A L+ ++ QVL+ +A +T I +L IS+KT H I+ L + Sbjct: 867 LTAGGRVTAPDA---LTAREEQVLALVAEGLTNGQIAARLFISVKTVSVHVSAILRKLGV 923 Query: 161 KRINE 165 E Sbjct: 924 SSRTE 928 >UniRef50_A1VAY8 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfovibrio vulgaris RepID=A1VAY8_DESVV Length = 235 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 +L+ ++ +VL +A +I + L +S KT H+ N M L L E+ Sbjct: 163 ALTPREREVLHYVAEGFRNREIADLLVVSEKTVEKHRANFMAKLGLHSAAEV 214 >UniRef50_D2Q8N6 Two-component response regulator n=6 Tax=Actinobacteridae RepID=D2Q8N6_9BIFI Length = 230 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS ++ +V+ IA T +++ +L IS+KT H +++ L L EL R Sbjct: 170 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTELTRW 223 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 PE +LS ++ +VL I + + I +KL +S+KT +K ++ L+ + +ELV + Sbjct: 147 PEEPAALSTREREVLELIVHGYSLSTIADKLYLSIKTVSTYKTRLLQKLDCTQNSELVDY 206 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ +VL IA T +I ++L +S++T H+ +I + ELVR+ Sbjct: 158 LTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRY 211 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SLS K+ ++ +A M+ + I E L IS KT HK IM L + + +++ Sbjct: 169 SLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVIDF 223 >UniRef50_Q8XQS8 Probable transcription regulator protein n=7 Tax=Ralstonia solanacearum RepID=Q8XQS8_RALSO Length = 177 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 + P++ +L+ +Q +L +A+ + +I + L IS++T H I+M L + EL Sbjct: 103 AAAPKSWQALTPRQQDILREVASGKSNVEIAQTLHISVETVKSHMQQILMRLEARNRTEL 162 >UniRef50_A5W4E2 Response regulator receiver protein n=4 Tax=Pseudomonas RepID=A5W4E2_PSEP1 Length = 206 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 18/144 (12%) Query: 43 VIIDTLMNNVFHSNFLTQIERLKPVHVIIFS------PFNIKRCLGKVPVTFVP--RTI- 93 +I+D M + + Q++ L IIF P +K F R Sbjct: 53 LILDVRMPEMSGLDVQRQLKELGEQIPIIFISGHGDIPMAVKAIKAGAVDFFTKPFREEE 112 Query: 94 ---TIIDFVALINGSYCSVPEAAV------SLSRKQHQVLSCIANQMTTEDILEKLKISL 144 I + L + P + SLS+++ QVL + + +L IS Sbjct: 113 LLGAIRAALKLAPQQRSNAPRVSELKENYESLSKREQQVLKFVLRGYLNKQTALELDISE 172 Query: 145 KTFYCHKHNIMMILNLKRINELVR 168 T H+HNIM + + I +LVR Sbjct: 173 ATVKVHRHNIMRKMKVSSIQDLVR 196 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 E +LS+++ VL IAN ++I + L IS++T H+ I L LV+ Sbjct: 143 EKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVK 200 >UniRef50_C0N287 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N287_9GAMM Length = 192 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 37/62 (59%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 + EA SL+ ++H+VL + + + + I + IS++T H+ ++M L+ K ++++ Sbjct: 113 ATAKEAVASLTPREHEVLKGMVDGLRNKQIAFDMDISIRTVELHRVHVMEKLDAKSLSDV 172 Query: 167 VR 168 ++ Sbjct: 173 LK 174 >UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQV4_9DELT Length = 222 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS ++ ++ +A+ + I + L IS KT HK++++ L INEL + Sbjct: 159 MLSPREKEIFRLLADGYSVRQIGDALNISPKTVETHKYSVLTKLRASSINELTK 212 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 ++ SL+ ++ +VL + +I + L IS+KT H+ N M L L+ EL + Sbjct: 149 DSLESLTEREREVLKQVLAGYKNREIADLLVISVKTVEKHRSNFMKKLGLRSKAELKAY 207 >UniRef50_A7AIL4 Putative uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AIL4_9PORP Length = 202 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQ 170 E +LS ++ +++ C+ MT +I ++L +S T H+ NI L + + L + Sbjct: 130 EDQQTLSSREKEIVICVVKGMTNREIADRLYLSTHTVITHRRNIARKLQVHSASGLTVYA 189 Query: 171 HIDYLV 176 ++ L+ Sbjct: 190 IVNKLI 195 >UniRef50_UPI0001C342BD hypothetical protein EcanA3_16147 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C342BD Length = 183 Score = 56.9 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 8/107 (7%) Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC-SVPEAAVS-LSR 118 +E+L +V+ P N + P F ++ +A + G + P+ +S LS Sbjct: 73 VEQLMKRNVMAIVPRNAR------PEIFSAALDSVCAGMACMPGEWLQPQPQQELSALSD 126 Query: 119 KQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINE 165 +QH VL +A + ++I L IS T H + L++K + Sbjct: 127 RQHDVLKLLAAGESNKEIGRSLNISAATVKAHLETVFRRLDVKNRTQ 173 >UniRef50_UPI00016C424A two component transcriptional regulator, LuxR family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C424A Length = 205 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 +L+ ++ +VL + + + I +L +S K+ H+ N+M L + + ELVR Sbjct: 145 ALTAREREVLDLVVSGKANKVIARELAVSEKSVEFHRGNMMRKLKVDNVAELVR 198 >UniRef50_Q2W107 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Magnetospirillum RepID=Q2W107_MAGSA Length = 214 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L +++ +VL +A + + +I L I++ T H+ NI L + R +L+R+ Sbjct: 152 LGKREREVLVLLAGGLRSAEIAASLGIAVGTVEVHRRNIKQKLGMNRTADLIRY 205 >UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8M5_LARHH Length = 211 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 A L+ ++H+V+ I + I E+L IS+KT H+ ++ + +K EL Sbjct: 143 AALQQLTEREHEVMQLIVAGRLNKQIAEELDISIKTVEVHRSRVLDKMGVKSAVEL 198 >UniRef50_B7AAT6 Two component transcriptional regulator, LuxR family n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT6_THEAQ Length = 207 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS ++ +VL +A ++ +++ EKL IS KT ++ M L L +EL+R+ Sbjct: 147 LSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLASRSELLRY 200 >UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=Pseudomonas fluorescens RepID=Q4KI37_PSEF5 Length = 848 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 102 INGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 S + LS ++ QVL IA + + I E+L ISL T H I L ++ Sbjct: 773 TPSSAGPLENRESLLSLRELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVE 832 Query: 162 RINELV 167 R + V Sbjct: 833 RRTQAV 838 >UniRef50_A8TRW2 Response regulator, NarL-family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRW2_9PROT Length = 207 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 SV +LS ++ QVL + + I L IS +T H+ N+M + + ELV Sbjct: 134 SVRSCYGTLSARELQVLEAMVAGRLNKQIAHDLGISQRTVEVHRANVMEKMRASSLAELV 193 Query: 168 R 168 R Sbjct: 194 R 194 >UniRef50_B4F1Q9 LuxR-family transcriptional regulator n=3 Tax=Proteus RepID=B4F1Q9_PROMH Length = 211 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Query: 74 PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTT 133 P N+ L V +F+ + F +Y S+ + LS ++ +V+ I + T+ Sbjct: 109 PLNVNELLNIVSESFLHYESEVEQF-----RTYISLKDKFSKLSNREKEVMEMILDGNTS 163 Query: 134 EDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 ++ EKL +S +T H+ N+ L ++ + +LV+ Sbjct: 164 KEAAEKLSLSPRTVEVHRSNMYTKLKIRSLPQLVQE 199 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 P LSR++ +VL + +T ++I ++L +S+KT ++ + LK + V Sbjct: 139 PPPAERSQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKTRADYV 198 Query: 168 RH 169 R+ Sbjct: 199 RY 200 >UniRef50_C1A6M2 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6M2_GEMAT Length = 206 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 40/84 (47%) Query: 89 VPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 V R + D A +V + L+ ++ +V +A + + I +L I+LKT Sbjct: 119 VKRAVARCDAHATKQELLSAVLQRIERLTAREREVFEGVARGLPNKSIATELGIALKTVK 178 Query: 149 CHKHNIMMILNLKRINELVRHQHI 172 H+ +M ++ + + +LVR + + Sbjct: 179 VHRGRVMTKMDAESVADLVRAREV 202 >UniRef50_B1VE62 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VE62_CORU7 Length = 248 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++H+VL +A T +++ E+L IS+KT H NI+ L R Sbjct: 189 LTPREHEVLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNRRSLSRW 242 >UniRef50_C6MFJ7 Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFJ7_9PROT Length = 210 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L++ + +VL+ I+ TT I +KL +S KT H+ NI LNL N L+ Sbjct: 148 LTKTERKVLTKISEGFTTPQIAQKLSVSQKTIENHRVNISRKLNLSGPNSLINF 201 >UniRef50_C5S6K7 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6K7_CHRVI Length = 209 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L+ ++H+VL+ +T +DI +L IS +T H+ +M + + EL R Sbjct: 143 LTPREHEVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMGAGNLAELCR 195 >UniRef50_B3PBX1 Response regulator receiver domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PBX1_CELJU Length = 209 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 32/53 (60%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 L+ K+ ++L I +++++I L +S++T H+ +M L++K EL+R Sbjct: 147 LTPKEQEILQGILQGLSSKEIAAGLGLSVRTVENHRARLMDKLHVKSAIELMR 199 >UniRef50_C0A665 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A665_9BACT Length = 217 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 112 AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 A ++ ++ +VL +A ++ ++I E L IS KT ++ +M N+ + ELVR Sbjct: 130 CAPKITVREREVLDGLARGLSGKEIGEHLGISRKTMEMYRTRLMKKFNVDKATELVR 186 >UniRef50_Q988Y3 Two-component regulator n=1 Tax=Mesorhizobium loti RepID=Q988Y3_RHILO Length = 223 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 111 EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 E+ +L++++ +VL I N ++ ++I L +S+ T H HNI+ L L R + +R Sbjct: 145 ESTKALTQREGEVLQLIGNGLSNKEIALDLSVSVATVKHHVHNILQKLKLPRRTQAMR 202 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 +LS ++ +V I + I E+L +S+KT ++ +I L LK +LV + Sbjct: 168 ALSDREFEVFQLIGKGYGSRQIAEQLSLSVKTVEAYRASIKQKLYLKSGPQLVHY 222 >UniRef50_A6BYP5 Response regulator receiver domain protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYP5_9PLAN Length = 221 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 115 SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 SLS ++ +V I TT I +KL +S KT ++ NI LNL+ L RH Sbjct: 158 SLSDRELEVFEQIGEGETTRSIAQKLNLSSKTVETYRENIKHKLNLENATALTRH 212 >UniRef50_B1ZJJ2 Transcriptional regulator, LuxR family n=7 Tax=Methylobacterium RepID=B1ZJJ2_METPB Length = 241 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 +A+ L+ ++ +VL ++ + +++ +L +S++T H+ N+ R+ +LV Sbjct: 152 PAADASAGLTPREAEVLRFLSAGFSNKEVARRLSLSVRTVETHRLNLRRKTQTGRLKDLV 211 >UniRef50_P26487 Transcriptional regulatory protein fixJ n=11 Tax=Proteobacteria RepID=FIXJ_AZOC5 Length = 211 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS+++ QVL C+ N + + I L IS +T ++ N+M + + ELVR Sbjct: 143 LSQRERQVLECLVNGLANKTIAYDLGISPRTVEVYRANVMTKMKAASLPELVR 195 >UniRef50_Q3BU15 Two-component system response regulator, LuxR family n=12 Tax=Xanthomonadaceae RepID=Q3BU15_XANC5 Length = 221 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 P +LS +Q ++L I + ++I L IS+KT H+ +M L +R N+LV Sbjct: 153 PVGIAALSPRQREILREIGRGQSNKEIAADLGISVKTVETHRARMMESLGCRRANDLV 210 >UniRef50_B0TQI9 Two component transcriptional regulator, LuxR family n=2 Tax=Gammaproteobacteria RepID=B0TQI9_SHEHH Length = 224 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 24/151 (15%) Query: 37 LHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITII 96 +++ +I+D+ M + Q+ + I+F + G VP+ + + Sbjct: 52 MNEGGCLILDSRMPGMSGQELQYQLSQTDCSLGIVFLTGH-----GDVPMAVDALKLGAV 106 Query: 97 DFVA-------------------LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDIL 137 DF+ + S L+ ++ +L +A T + + Sbjct: 107 DFLQKPIEITKLLKAVSQAFDASTSSKELKSAIRCYEELTLRERDILQLLAQGKTNQQLA 166 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELVR 168 E L IS +T H+ N++ L + + ++VR Sbjct: 167 ELLFISARTVEVHRSNMLKHLQMDSLAKMVR 197 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS ++ QVL +A + +I + +S KT HK +M L L E++R+ Sbjct: 145 HEVLSDREFQVLQMLAAGKSINEIADICALSAKTISTHKMRLMQKLGLANNAEVIRY 201 >UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas RepID=A4XRD7_PSEMY Length = 868 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 LS ++ VL IA + ++I ++L ISL T H I + L ++R + V Sbjct: 798 PASAGTALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAV 857 >UniRef50_A6LIL1 Transcriptional regulator n=6 Tax=Bacteroidales RepID=A6LIL1_PARD8 Length = 193 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 86 VTFVPRTITIIDFVALINGSYCS---VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 +T TII+ + + S S E LS ++ VL I +T ++I +KL I Sbjct: 93 ITLRSSQETIIEQLQQLFTSDSSGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNI 152 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRH 169 SL T H+ NI L +K ++ L + Sbjct: 153 SLNTVLTHRKNITAKLGIKTVSGLTFY 179 >UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W2Z0_DYAFD Length = 205 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 + P+ L+R++ +VL IA +T I E+L IS+ T H+ N+++ + L Sbjct: 136 ATAPKTVPFLTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASL 195 Query: 167 VR 168 ++ Sbjct: 196 IK 197 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 P+ L+ ++ VL +A+ + +++ +L IS++T H+ NI L +K LVR+ Sbjct: 139 PDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETHRRNIKDKLAIKTSAGLVRY 198 >UniRef50_C5CTM1 Two component transcriptional regulator, LuxR family n=2 Tax=Variovorax paradoxus S110 RepID=C5CTM1_VARPS Length = 235 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 V+L+ ++ ++L +A ++ D+ E L IS T CH NI L + E V Sbjct: 172 VALTPRERRILELVAQGLSNRDMAESLSISRLTVECHTKNIYRKLAVSSRTEAV 225 >UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexaceae RepID=A9WKI8_CHLAA Length = 209 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 22/149 (14%) Query: 43 VIIDTLMNNVFHS-NFLTQIERLKP-VHVIIFSPF-NIKRCLGKV---PVTFVPRTITII 96 +++D LM Q++RL P H+II S + + R +G + +T++ + Sbjct: 53 IVMDVLMPGGIDGIETTRQLKRLIPHTHIIILSGYADDARVIGALRAGAITYIEKESQPE 112 Query: 97 DFVALINGSYC----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKL 140 + I G+ +AA +L+ ++ +VL +A +T +I +L Sbjct: 113 QLLEAIRGAMAGKAVLAPALMQRILEAQTSKAADTLTEREREVLKLVAEGLTNAEIASRL 172 Query: 141 KISLKTFYCHKHNIMMILNLKRINELVRH 169 +S +T H +I+ L L + + Sbjct: 173 TVSEETVKTHVASILRKLGLAHRTQAAIY 201 >UniRef50_C4ZNR1 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNR1_THASP Length = 247 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 +LS ++ +VL + + + I + L IS+KT H+ N+M + ++ + ELV Sbjct: 151 AALSGREREVLKLVIDGRLNKQIADDLGISIKTVKVHRANMMKTMAVRSVAELV 204 >UniRef50_B6A1Y1 Transcriptional regulator, LuxR family n=2 Tax=Rhizobium leguminosarum RepID=B6A1Y1_RHILW Length = 959 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 92 TITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 T+ + L G S P+A + L+ ++ +VL +A + +I + L IS KT H Sbjct: 872 TLAAKARIDLRGGKEGSTPKAKLGLTDREFEVLRLVAAGQSNREIADNLFISSKTASVHV 931 Query: 152 HNIMMIL 158 NI+ L Sbjct: 932 SNILSKL 938 >UniRef50_C6Y109 Response regulator receiver n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y109_PEDHD Length = 224 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 +V E A+ S ++ ++L IA +T +++ ++L IS +T H+ ++ + L+ Sbjct: 155 AVAETAIDFSSREIEILELIAEGLTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALI 214 Query: 168 RHQHI 172 R+ + Sbjct: 215 RYAMV 219 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 SV + SL+ ++ VL ++ + ++I + S++T H+ ++ L ++ L+ Sbjct: 141 SVARSNRSLTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIEGQAALM 200 Query: 168 RH 169 ++ Sbjct: 201 KY 202 >UniRef50_Q603M9 DNA-binding response regulator, LuxR family n=1 Tax=Methylococcus capsulatus RepID=Q603M9_METCA Length = 216 Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 104 GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 LS+++ QVL C +++D + L IS +T ++ N+M + + + Sbjct: 144 RRQAEAAAQYARLSKREKQVLHCTVKGYSSKDTAKSLAISHRTVEIYRANVMRKMQAETL 203 Query: 164 NELVR 168 +LVR Sbjct: 204 ADLVR 208 >UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY5_SYMTH Length = 218 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 16/145 (11%) Query: 25 VHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKV 84 V I EID L + D + ++ L P ++ I G+ Sbjct: 76 VVILTVSEIDKDLFEAIKAGADGYL-----------LKNLGPEELVSSLRAAIS---GEA 121 Query: 85 PVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 P++ V + +F + + + LS ++ +VL + +T ++I KL ++ Sbjct: 122 PISSVMAAKMLKEFRQ--PRANTTGKQPGQQLSPREIEVLRLASTGLTYKEIAAKLYVAE 179 Query: 145 KTFYCHKHNIMMILNLKRINELVRH 169 T H +I+ L+L+ +E V + Sbjct: 180 STVKNHMRHILEKLHLRNRSEAVGY 204 >UniRef50_Q47P06 Regulatory protein, LuxR n=1 Tax=Thermobifida fusca YX RepID=Q47P06_THEFY Length = 917 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 P L+ +Q Q+ +A T +I ++L IS +T H NI L ++ EL R Sbjct: 854 PAPTAGLTPQQEQIARLVAEGATNREIAQRLYISPRTVEHHLRNIFRQLQIRSRVELAR 912 >UniRef50_UPI0001AEF693 LuxR family transcriptional regulator n=1 Tax=Streptomyces roseosporus NRRL 11379 RepID=UPI0001AEF693 Length = 887 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 110 PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 P+A +LS+++ +V + T ++I ++L I+ T H + LN++R EL + Sbjct: 827 PKALSALSKQERRVAELASEGYTNQEIADQLFITKSTVEQHLTRVFRKLNVQRRQELSQ 885 >UniRef50_B1XKM6 Two-component response regulator n=28 Tax=Cyanobacteria RepID=B1XKM6_SYNP2 Length = 226 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 69 VIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIA 128 V + PF + + +V + + A + VP + V L+ + +V+S +A Sbjct: 120 VYLVKPFEPEELVAQVESSLNQARRILSHSGATTSSMAFQVP-SHVELTPTETKVVSFVA 178 Query: 129 NQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 ++ +I EKL +S +T H N++ +L EL R LV Sbjct: 179 QGLSNREIAEKLNVSQRTIESHVSNMLNKTSLNNRTELARWAMDSRLV 226 >UniRef50_Q2W8X3 Response regulator n=2 Tax=Magnetospirillum RepID=Q2W8X3_MAGSA Length = 216 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 33/56 (58%) Query: 113 AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 A SL+ ++++V+ +A ++ + ++L IS++T H+ +M + ++ LVR Sbjct: 141 ANSLTPREYEVMVLVAQGLSNKAAAQELGISVRTVEIHRARVMEKMAADSLSALVR 196 >UniRef50_Q124P8 Two component transcriptional regulator, LuxR family n=6 Tax=Burkholderiales RepID=Q124P8_POLSJ Length = 229 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 LS ++ +VL I +T ++I L +S +T H+ N+ L + + +L+R Sbjct: 163 AQLSEREREVLGLIVAGLTNKEIGRALAVSPRTVETHRANLFAKLEAESLAQLIR 217 >UniRef50_C5C3G8 Two component transcriptional regulator, LuxR family n=6 Tax=Actinomycetales RepID=C5C3G8_BEUC1 Length = 208 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 + + +L+ + +VL +A +T DI E+L ++ KT H +++ + L+R + Sbjct: 136 AAHEDPTSALTPSERRVLELVAEGLTNRDIAERLGVAEKTVKNHVTSMLSKMGLQRRTQA 195 Query: 167 V 167 V Sbjct: 196 V 196 >UniRef50_C1SMK1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK1_9BACT Length = 219 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 83 KVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 K + F +T +N C + +L+ ++ QV I N TT+ I KL + Sbjct: 122 KGKIYF-SEKMTEYILNKAMNVKNCEDKDVVEALTDREFQVFQMIGNGFTTKQIATKLNL 180 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRH 169 S+KT + ++ L LK EL ++ Sbjct: 181 SVKTIDAFRESMKHKLGLKSAPELSQY 207 >UniRef50_A1SCG5 Transcriptional regulator, LuxR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SCG5_NOCSJ Length = 545 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINE 165 P L+R++H VL+ +A+ ++ +I ++L +S KT H +I+ L L+ E Sbjct: 478 PEPRDPGVLTRREHDVLTLLADGLSNPEIAQRLYLSRKTVAHHVSSILTKLALRSRAE 535 >UniRef50_P23221 Transcriptional regulatory protein fixJ n=9 Tax=Alphaproteobacteria RepID=FIXJ_BRAJA Length = 205 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 29/136 (21%) Query: 58 LTQIERLKPVHVIIFSPFNIKRCLG--KVPVTFVPRTITIIDFVA-----------LING 104 + ++R+K SPF I G VP+ + +DF+ + + Sbjct: 64 IELLKRMKAQQ----SPFPILIMTGHGDVPLAVEAMKLGAVDFLEKPFEDDRLTAMIESA 119 Query: 105 SYCSVPEAA------------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 + P A SLS ++ QV+ + ++ + I + IS +T ++ Sbjct: 120 IRQAEPAAKSEAVAQDIAARVASLSPRERQVMEGLIAGLSNKLIAREYDISPRTIEVYRA 179 Query: 153 NIMMILNLKRINELVR 168 N+M + ++ELVR Sbjct: 180 NVMTKMQANSLSELVR 195 >UniRef50_C7PLV7 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV7_CHIPD Length = 229 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS+ + ++L IA M++ DI IS++T H+HNI L L N LV+ Sbjct: 165 LSKTEAKILDMIARGMSSRDIASYKCISVRTVDNHRHNITKKLQLSGPNALVKF 218 >UniRef50_C5SQM4 Two component transcriptional regulator, LuxR family n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SQM4_9CAUL Length = 206 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 29/165 (17%) Query: 28 QNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVT 87 Q+ E+D+ +I D M + F + + F+P G +P+T Sbjct: 40 QDVLELDLADELAC-IITDVRMPRIGGLEFQKLLAERRD-----FTPVIFITGYGDIPMT 93 Query: 88 ----------FVPRTITIIDFVALINGSY-------------CSVPEAAVSLSRKQHQVL 124 F+ + D + +N + + +L+ ++ +V+ Sbjct: 94 VHAMKAGAVDFLAKPFRDQDLLEAVNSALELARERRFSSEERSAAQRLYDTLTPREREVM 153 Query: 125 SCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 + + + I +L I+ T H+ ++M + ++ + EL+++ Sbjct: 154 DGVVRGLLNKQIAGELAIAEITVKLHRASLMRKMGVRTVPELIKY 198 >UniRef50_Q3JAP2 Two component transcriptional regulator, LuxR family n=2 Tax=Nitrosococcus oceani RepID=Q3JAP2_NITOC Length = 232 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 38/79 (48%) Query: 89 VPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 V R ++ F S SL+ ++ Q+L + + I +L+IS+KT Sbjct: 117 VFRAVSQAVFFWEKEKQIESARRRLSSLTLREKQILDLVLRGTLNKVIAYELEISMKTVE 176 Query: 149 CHKHNIMMILNLKRINELV 167 H+HN+M L+ K + EL+ Sbjct: 177 VHRHNMMEKLSAKNLVELI 195 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 + L+ ++ +VL +A M +I ++L IS T H NI+ L L E V + Sbjct: 148 LRLTERELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMY 203 >UniRef50_Q89DY0 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89DY0_BRAJA Length = 225 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L+ ++ V+ +A + + I L +S+KT H+ M L++ LVR+ Sbjct: 163 LTPREQLVVKLVAEGYSNKGISAILNLSVKTTEAHRAAAMRKLDVNSTAGLVRY 216 >UniRef50_Q6MJE1 Two-component response regulator homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJE1_BDEBA Length = 226 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 96 IDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 D+V P L+ ++ +V+ IA T +++ L+ S T HK N+M Sbjct: 146 KDYVCPALEKVMGEPRLTNVLTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVM 205 Query: 156 MILNLKRINEL 166 LNL E+ Sbjct: 206 RKLNLSNAVEI 216 >UniRef50_A5FAW2 Two component transcriptional regulator, LuxR family n=2 Tax=Flavobacterium RepID=A5FAW2_FLAJ1 Length = 219 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 LS ++ ++++ I + + ++I EKL IS+ T H+ NIM LN+K LV++ Sbjct: 157 LSPREIEIVTLICLEYSGKEISEKLFISVNTVETHRKNIMKKLNIKNTIGLVKY 210 >UniRef50_D0L5W2 Response regulator receiver n=36 Tax=Actinomycetales RepID=D0L5W2_GORB4 Length = 216 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 PE V L+ ++ QVL +A +++ I +L IS +T H + L L EL Sbjct: 147 PGPETPV-LTERETQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELT 205 Query: 168 RH 169 R+ Sbjct: 206 RY 207 >UniRef50_C7BU28 Two component transcriptional regulator, luxr family n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BU28_PHOAA Length = 209 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 42/95 (44%) Query: 75 FNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTE 134 F K + + V ++ + + Y + LS ++ +V+ I T++ Sbjct: 104 FLTKPIDADLLIETVSNALSFHQKIFKQHQVYEQLKVKFSQLSDRESEVMKIILEGKTSK 163 Query: 135 DILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 I ++L +S +T H+ NI L++ + +LV+ Sbjct: 164 QIAQQLALSPRTIEVHRANIFHKLDIHSLPQLVKE 198 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 116 LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRH 169 L++++ +V + + TT+DI L IS+KT H+ ++ L + ELVR+ Sbjct: 151 LTQREREVFHLVVDGKTTKDIARTLDISVKTAENHRGKVLDKLGVSNTAELVRY 204 >UniRef50_B9XH34 Two component transcriptional regulator, LuxR family n=3 Tax=bacterium Ellin514 RepID=B9XH34_9BACT Length = 226 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Query: 82 GKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLK 141 G P+T + + F+A + LS ++ ++L+ +A ++ ++I KL Sbjct: 136 GGAPMTSEIARMVVRSFIADT-----PEKDETGQLSGREQEILALLAEGLSNKEIGSKLN 190 Query: 142 ISLKTFYCHKHNIMMILNLKRINE 165 IS T H +I L+++ E Sbjct: 191 ISFTTVRTHLMHIYEKLHVRCRTE 214 >UniRef50_B0U7I7 Transcriptional regulator, LuxR family n=1 Tax=Methylobacterium sp. 4-46 RepID=B0U7I7_METS4 Length = 118 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 80 CLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEK 139 L VP + R D V + P+ L+ ++ +VL +A + + I + Sbjct: 22 LLADVPGLRLARPGEAADAVVTLPPGNGPAPDPG--LTPREIEVLGLLAEGASNKAIARR 79 Query: 140 LKISLKTFYCHKHNIMMILNLKRINELVRH 169 L IS+ T H +++ L+ + V H Sbjct: 80 LGISVHTAKFHVGSLLDKLDATGRTDAVAH 109 >UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HUJ9_9SPHI Length = 269 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 114 VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 VSL++K+ Q++ I + M +++I + L IS T H+ NI+ L K + E+V+ Sbjct: 204 VSLTKKEKQIVKMILDGMKSKEIGQVLNISFNTVSTHRKNILRKLGAKNLGEMVK 258 >UniRef50_C7PEC4 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEC4_CHIPD Length = 207 Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 27/195 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 ++ T+F ++++L + + +Q +L HQ I+D M + Sbjct: 7 IILADDHTLFADGIRSLLEQTPYITVQGIASNGQVLIEMLQRHQPDLAILDISMPVLNGL 66 Query: 56 NFLTQIERLKP-VHVIIFSPFN------IKRCLGK--------------VPVTFVPRTIT 94 I + P + II S ++ + R G +T V R + Sbjct: 67 EVTKIIRKDMPHIRTIILSSYSDPHLISLSRSYGADGYLMKTCNQYDLLQTITRVVRGES 126 Query: 95 IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + I + +L+R++ ++L I Q T + I L +S+ T H+ NI Sbjct: 127 CFPQLPRIQEAEIDHSFREFNLTRRELEILHLINQQFTNQQIATHLYLSIYTVETHRKNI 186 Query: 155 MMILNLKRINELVRH 169 M L LK L R Sbjct: 187 MQKLQLKSPAALTRF 201 >UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 Tax=Synechococcus RepID=Q2JML6_SYNJB Length = 229 Score = 55.4 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 71 IFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAA-------VSLSRKQHQV 123 I PF + K+ T + + LI PEA + L+ + +V Sbjct: 102 IIKPFEPLELVAKIEAQIERSRRTQSEILRLIQQQSQPKPEADPRPTPPELPLTPAEERV 161 Query: 124 LSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQH 171 + T + I EKL IS +T H NI+ L+L+ ++LVR + Sbjct: 162 FREVIRGFTNKQIGEKLFISPRTVQTHLTNILSKLSLENRSQLVRFAY 209 >UniRef50_Q2SBZ4 Response regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBZ4_HAHCH Length = 204 Score = 55.4 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 26/167 (15%) Query: 22 GNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCL 81 G + +Q E+ V L V+ D M N L +E L+ + + P + Sbjct: 38 GLLARLQQLEDAGVPLSDKC-VVTDLRMP---DMNGLELMEELRTRRLSV--PVVLITGH 91 Query: 82 GKVPVTFVPRTITIIDFVA----------------LINGSYCSVPEAAV----SLSRKQH 121 V + + +F+ GS P+AA LS ++ Sbjct: 92 ADVTLAVSAMRMGAANFLEKPFENSILVETVKSAISEPGSALRNPQAAKEKLGRLSPRER 151 Query: 122 QVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVR 168 QVL+ + + I + L IS+KT H+ N+ L + + +LVR Sbjct: 152 QVLTHVCAGKLNKTIADILGISVKTVELHRANMASKLGARNVQDLVR 198 >UniRef50_Q6JHR3 Transcriptional regulator, LuxR family n=1 Tax=Saccharopolyspora spinosa RepID=Q6JHR3_9PSEU Length = 774 Score = 55.4 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 107 CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 E LSR++ ++ + M+ + I L IS +T H NI++ L +++ Sbjct: 701 APRKEPHTRLSRREREIAELVRQGMSNKQIASNLVISQRTAEAHVENILVKLGFTSRSQI 760 >UniRef50_C6CZA5 Two component transcriptional regulator, LuxR family n=4 Tax=Firmicutes RepID=C6CZA5_PAESJ Length = 221 Score = 55.4 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELV 167 + L+ ++ +VL IA + ++I E+L IS+KT H N++M L+ +L Sbjct: 150 TAQSGDEELTEREKEVLLLIAEGRSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQLA 209 Query: 168 RHQH 171 H Sbjct: 210 VLAH 213 >UniRef50_D1S2K1 Transcriptional regulator, LuxR family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S2K1_9ACTO Length = 979 Score = 55.4 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 13/100 (13%) Query: 75 FNIKRCLGKVPVTFVPRTITIIDFVAL--------INGSYCSVP-----EAAVSLSRKQH 121 + + + LG VP+T RTI V L + + P + +L+ ++ Sbjct: 865 YAMAQSLGAVPLTAEIRTIASRARVTLDAAPDPAPVPRQRAAAPAGPAVDELATLTARER 924 Query: 122 QVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 +VL+ +A +T +I ++L IS +T H +I L ++ Sbjct: 925 EVLAAVAEGLTNREIGQRLFISERTIGVHVSHIFDKLQVR 964 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q83J60 HTH-type transcriptional regulator dctR n=59 Tax... 194 1e-48 UniRef50_B7LQG5 Putative HTH-type transcriptional regulator dctR... 178 9e-44 UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 ... 161 1e-38 UniRef50_P63206 Transcriptional regulator gadE n=61 Tax=Enteroba... 161 1e-38 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 158 7e-38 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 157 2e-37 UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR fa... 156 3e-37 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 156 4e-37 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 154 1e-36 UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opit... 153 2e-36 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 152 3e-36 UniRef50_Q021D5 Two component transcriptional regulator, LuxR fa... 152 4e-36 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 151 8e-36 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 151 9e-36 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 151 1e-35 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 151 1e-35 UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC... 150 2e-35 UniRef50_Q04VJ6 Receiver component of a two-component response r... 150 2e-35 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 149 3e-35 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 149 3e-35 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 149 4e-35 UniRef50_C0QJ84 Two-component response regulator protein n=1 Tax... 149 4e-35 UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR fa... 149 4e-35 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 149 5e-35 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 149 5e-35 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 148 6e-35 UniRef50_B9XC41 Two component transcriptional regulator, LuxR fa... 148 7e-35 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 147 1e-34 UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Ta... 147 1e-34 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 147 2e-34 UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR fa... 146 3e-34 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 146 3e-34 UniRef50_C7PEC4 Two component transcriptional regulator, LuxR fa... 146 3e-34 UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microsc... 146 3e-34 UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiob... 146 3e-34 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 146 4e-34 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 146 4e-34 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 145 5e-34 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 144 9e-34 UniRef50_A8G0P8 Two component transcriptional regulator, LuxR fa... 144 1e-33 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 143 2e-33 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 143 2e-33 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 143 2e-33 UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR fa... 143 2e-33 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 143 3e-33 UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms Re... 142 5e-33 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 142 6e-33 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 142 6e-33 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 141 7e-33 UniRef50_B8D0J2 Two component transcriptional regulator, LuxR fa... 141 7e-33 UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR fa... 141 8e-33 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 141 8e-33 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 141 8e-33 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 141 9e-33 UniRef50_B3RA82 Response regulator protein; Response regulator r... 141 9e-33 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 141 9e-33 UniRef50_O07528 Uncharacterized transcriptional regulatory prote... 141 1e-32 UniRef50_A4VZN8 Response regulator containing a CheY-like receiv... 141 1e-32 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_Q023R1 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 141 1e-32 UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_D1AAU8 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_C6CZA5 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_B2KBW2 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_C7MLQ9 Response regulator containing a CheY-like receiv... 140 2e-32 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 140 2e-32 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=... 139 3e-32 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 139 3e-32 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 139 4e-32 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 139 4e-32 UniRef50_A5G586 Two component transcriptional regulator, LuxR fa... 139 5e-32 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 139 5e-32 UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexac... 138 6e-32 UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovib... 138 6e-32 UniRef50_C6Y2F0 Response regulator receiver n=1 Tax=Pedobacter h... 138 8e-32 UniRef50_P0C0Z1 Response regulator protein vraR n=123 Tax=Firmic... 138 8e-32 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 138 8e-32 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 138 9e-32 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 137 1e-31 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 137 1e-31 UniRef50_A0KNC9 Transcriptional regulatory protein FixJ n=1 Tax=... 137 1e-31 UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium... 137 1e-31 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 137 1e-31 UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR fa... 137 1e-31 UniRef50_C6DD36 Two component transcriptional regulator, LuxR fa... 137 1e-31 UniRef50_A8MF72 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 136 2e-31 UniRef50_B1ZU68 Two component transcriptional regulator, LuxR fa... 136 3e-31 UniRef50_C0A2L6 Response regulator receiver protein n=1 Tax=Opit... 136 3e-31 UniRef50_A5FNZ8 Two component transcriptional regulator, LuxR fa... 136 3e-31 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 136 3e-31 UniRef50_A9E1A9 Phosphoglyceromutase n=1 Tax=Kordia algicida OT-... 136 3e-31 UniRef50_B1ZT64 Two component transcriptional regulator, LuxR fa... 136 3e-31 UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1... 136 4e-31 UniRef50_C6W5G0 Two component transcriptional regulator, LuxR fa... 136 4e-31 UniRef50_Q3A5X6 Transcriptional regulator, LuxR family n=2 Tax=P... 136 4e-31 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 135 5e-31 UniRef50_Q8PM22 Transcriptional regulator n=3 Tax=Xanthomonas Re... 135 5e-31 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 135 5e-31 UniRef50_Q3BU15 Two-component system response regulator, LuxR fa... 135 5e-31 UniRef50_Q024A4 Two component transcriptional regulator, LuxR fa... 135 6e-31 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 135 7e-31 UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR fa... 134 8e-31 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 134 9e-31 UniRef50_C5D3Y5 Two component transcriptional regulator, LuxR fa... 134 9e-31 UniRef50_B8CMA1 Response regulator containing a CheY-like receiv... 134 1e-30 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 134 1e-30 UniRef50_A4J6C2 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_B2A8K6 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_B1ZN14 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_B1ZY58 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_A5FAW2 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_B5EEC0 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_C5V5K1 Two component transcriptional regulator, LuxR fa... 133 2e-30 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 133 2e-30 UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n... 133 2e-30 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 133 3e-30 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 133 3e-30 UniRef50_C7PDL7 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_C1F244 Two-component system response regulator n=1 Tax=... 133 3e-30 UniRef50_A1BJU3 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 132 3e-30 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 132 3e-30 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 132 5e-30 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 132 5e-30 UniRef50_A1TUY1 Two component transcriptional regulator, LuxR fa... 132 5e-30 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 131 8e-30 UniRef50_Q2W107 Response regulator containing a CheY-like receiv... 131 9e-30 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 131 9e-30 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 131 9e-30 UniRef50_B3Q5K9 Two-component response regulator protein-nodW mu... 131 1e-29 UniRef50_C4XNR8 NarL family two-component response regulator n=1... 131 1e-29 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 131 1e-29 UniRef50_C6X598 Two-component response regulator n=1 Tax=Flavoba... 131 1e-29 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 131 1e-29 UniRef50_A4XNE1 Two component transcriptional regulator, LuxR fa... 131 1e-29 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 130 2e-29 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 130 2e-29 UniRef50_B7GMR0 DNA-binding response regulator, NarL family (REC... 130 2e-29 UniRef50_C5S6K7 Two component transcriptional regulator, LuxR fa... 130 2e-29 UniRef50_B1T1G9 Two component transcriptional regulator, LuxR fa... 129 3e-29 UniRef50_C0GJ72 Two component transcriptional regulator, LuxR fa... 129 3e-29 UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiob... 129 3e-29 UniRef50_C0YQJ8 Transcriptional regulator n=1 Tax=Chryseobacteri... 129 3e-29 UniRef50_Q842F8 Response regulator, two-component system n=8 Tax... 129 3e-29 UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersin... 129 4e-29 UniRef50_Q7NMJ2 Two-component response regulator n=3 Tax=Gloeoba... 129 4e-29 UniRef50_C4XSZ8 NarL family two-component response regulator n=2... 129 4e-29 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 129 4e-29 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 129 5e-29 UniRef50_A5FIE9 Two component transcriptional regulator, LuxR fa... 129 5e-29 UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfo... 129 6e-29 UniRef50_C4KBL1 Two component transcriptional regulator, LuxR fa... 128 6e-29 UniRef50_B0TSG4 Two component transcriptional regulator, LuxR fa... 128 7e-29 UniRef50_B1ZU87 Two component transcriptional regulator, LuxR fa... 128 7e-29 UniRef50_Q1YTG7 Regulatory protein, LuxR:Response regulator rece... 128 7e-29 UniRef50_C6E2Z2 Two component transcriptional regulator, LuxR fa... 128 8e-29 UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermop... 128 9e-29 UniRef50_B7AAT6 Two component transcriptional regulator, LuxR fa... 127 1e-28 Sequences not found previously or not previously below threshold: UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 149 5e-35 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 144 9e-34 UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Acti... 144 1e-33 UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus... 142 3e-33 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 141 9e-33 UniRef50_A1SKW0 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 139 3e-32 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 139 4e-32 UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 ... 139 4e-32 UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR fa... 139 4e-32 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 139 5e-32 UniRef50_B2J2N1 Two component transcriptional regulator, LuxR fa... 138 7e-32 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 137 1e-31 UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphy... 137 2e-31 UniRef50_C6WIC9 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_B1Y743 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_D1BGN7 Response regulator containing a CheY-like receiv... 136 2e-31 UniRef50_UPI0001B502C9 two component LuxR family transcriptional... 136 2e-31 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 136 3e-31 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 135 5e-31 UniRef50_C1B8T3 NarL family two-component response regulator n=6... 135 6e-31 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 135 6e-31 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 135 6e-31 UniRef50_C7MUJ2 Response regulator containing a CheY-like receiv... 135 8e-31 UniRef50_B4CWX5 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Ac... 134 1e-30 UniRef50_D0LE76 Response regulator receiver n=2 Tax=Actinomyceta... 134 1e-30 UniRef50_C1RMQ2 Response regulator containing a CheY-like receiv... 134 2e-30 UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenel... 133 2e-30 UniRef50_Q1LE49 Two component transcriptional regulator, LuxR fa... 133 2e-30 UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 ... 133 2e-30 UniRef50_C7PZ17 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_B4D808 Two component transcriptional regulator, LuxR fa... 132 3e-30 UniRef50_D1CF52 Two component transcriptional regulator, LuxR fa... 132 4e-30 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 132 4e-30 UniRef50_D1VBH1 Two component transcriptional regulator, LuxR fa... 132 5e-30 UniRef50_D1C6S1 Two component transcriptional regulator, LuxR fa... 132 5e-30 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 132 6e-30 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 132 6e-30 UniRef50_Q024Y7 Two component transcriptional regulator, LuxR fa... 132 6e-30 UniRef50_A8LG56 Two component transcriptional regulator, LuxR fa... 132 7e-30 UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas fl... 132 7e-30 UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Ta... 131 9e-30 UniRef50_A9B5L0 Two component transcriptional regulator, LuxR fa... 131 1e-29 UniRef50_Q2T8I1 DNA-binding response regulator, LuxR family n=28... 131 1e-29 UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomyceta... 131 1e-29 UniRef50_C6BTX3 Two component transcriptional regulator, LuxR fa... 131 1e-29 UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 ... 131 1e-29 UniRef50_B8GUD1 Two component transcriptional regulator, LuxR fa... 131 1e-29 UniRef50_B0C756 Two-component transcriptional regulator, LuxR fa... 130 2e-29 UniRef50_A3TJD7 Two-component response regulator n=1 Tax=Janibac... 130 2e-29 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 130 2e-29 UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Synt... 130 2e-29 UniRef50_UPI0001AF0F26 two-component system response regulator n... 130 3e-29 UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR fa... 129 3e-29 UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteri... 129 3e-29 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 129 4e-29 UniRef50_B7A7I0 Two component transcriptional regulator, LuxR fa... 129 4e-29 UniRef50_C0GHS5 Two component transcriptional regulator, LuxR fa... 129 5e-29 UniRef50_A4CN07 Response regulator containing a CheY-like receiv... 129 5e-29 UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR fa... 129 5e-29 UniRef50_A6E779 Response regulator n=1 Tax=Pedobacter sp. BAL39 ... 129 5e-29 UniRef50_C4RQT0 LuxR family two-component system transcriptional... 129 6e-29 UniRef50_A0AX19 Two component transcriptional regulator, LuxR fa... 128 6e-29 UniRef50_A1VIF2 Two component transcriptional regulator, LuxR fa... 128 6e-29 UniRef50_D1C1C8 Two component transcriptional regulator, LuxR fa... 128 6e-29 UniRef50_A9VYF8 Response regulator receiver n=5 Tax=Methylobacte... 128 6e-29 UniRef50_A5V148 Two component transcriptional regulator, LuxR fa... 128 7e-29 UniRef50_Q6ADI3 Two-component system, regulatory protein n=1 Tax... 128 7e-29 UniRef50_UPI00017468E1 two-component response regulator n=1 Tax=... 128 8e-29 UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanob... 128 8e-29 UniRef50_A7NP18 Two component transcriptional regulator, LuxR fa... 128 8e-29 UniRef50_C1XWT0 Two component transcriptional regulator, LuxR fa... 128 8e-29 UniRef50_D2PZN7 Two component transcriptional regulator, LuxR fa... 128 9e-29 UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 ... 128 9e-29 UniRef50_C4DCK3 Response regulator containing a CheY-like receiv... 128 1e-28 UniRef50_C1F5C0 DNA-binding response regulator, LuxR family n=1 ... 127 1e-28 UniRef50_C7R398 Two component transcriptional regulator, LuxR fa... 127 1e-28 UniRef50_A8LYA5 Two component transcriptional regulator, LuxR fa... 127 1e-28 >UniRef50_Q83J60 HTH-type transcriptional regulator dctR n=59 Tax=Enterobacteriaceae RepID=DCTR_SHIFL Length = 176 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 174/176 (98%), Positives = 175/176 (99%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ Sbjct: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 IERLKPVHVI+FSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEA VSLSRKQ Sbjct: 61 IERLKPVHVIVFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEANVSLSRKQ 120 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV Sbjct: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 >UniRef50_B7LQG5 Putative HTH-type transcriptional regulator dctR, Probable repressor of dctA dicarboxylate transporter gene n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQG5_ESCF3 Length = 187 Score = 178 bits (451), Expect = 9e-44, Method: Composition-based stats. Identities = 108/176 (61%), Positives = 144/176 (81%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 MFL+IT+DT+ F A+ +L+K VVH+Q+E++ID++LHQ+ +IIDTLMNNVFHS + Sbjct: 12 MFLVITKDTVLFNAITFLLNKSQVVHVQDEDDIDLVLHQHCHIIIDTLMNNVFHSAMAEK 71 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 I++L+P VI+FSPF IKRCLG +PVTFV R I++IDF+ L+N C PEA + LSRKQ Sbjct: 72 IKQLRPEQVIVFSPFIIKRCLGDIPVTFVLRNISLIDFMVLVNRGLCPAPEADIMLSRKQ 131 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HQVLS IA QM TEDIL+K++ISLKTFYCHKH++MMILNL+RI EL+++ H+ YL+ Sbjct: 132 HQVLSYIAQQMQTEDILQKMQISLKTFYCHKHSVMMILNLRRITELIKYPHVSYLI 187 >UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY27_AZOSE Length = 215 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 32/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHS 55 ++ MF A++ +L K + I E E ID++ HQ +D M + Sbjct: 5 IVLADDHQMFRHALRAMLEKEPGIRIVGEASNGDELIDLISHQPVDIACVDIGMPGMNGI 64 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSY---- 106 ++ ++P V VI S F+ ++ L +V + + + I+ Sbjct: 65 EATRRLLAIRPHVRVIGLSAFSDRQFVLDLLNAGATGYVTKAEAGEELLRAIHTVQQSKT 124 Query: 107 -----------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 +A ++ ++ QVL IA T+ I ++L ++ T Sbjct: 125 YLCPDVAATVTNALLDNAPKDISAPRITARERQVLQLIAEGYTSTRIADRLHLAPSTVEV 184 Query: 150 HKHNIMMILNLKRINELVRHQHIDYL 175 H+ NIM L+L + EL ++ + Sbjct: 185 HRRNIMRKLDLHSVAELTKYAIRSGI 210 >UniRef50_P63206 Transcriptional regulator gadE n=61 Tax=Enterobacteriaceae RepID=GADE_ECO57 Length = 175 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 81/175 (46%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMNNVFHSNFLTQ 60 M ++T+D+ + ++ I + EI + ++ VIIDT N++ + Sbjct: 1 MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHNHILDEEAIKF 60 Query: 61 IERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEAAVSLSRKQ 120 +E+L +I+ +P++I + K P+ FV R +I + + + G + + + S Q Sbjct: 61 LEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEITYGKHLPHKNSQLCFSHNQ 120 Query: 121 HQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 +++ I +I L IS +T K NIM L L+R++++V Y Sbjct: 121 FKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKLRRMSDIVTLGITSYF 175 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 158 bits (400), Expect = 7e-38, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNV----VHIQNEEEIDV-MLHQNAFVIIDTLMNNVFHSN 56 LI + ++ +L + + + + + + + + VI+D M N+ S Sbjct: 5 ILIADDHAIVREGLRVLLERKGLEVPWMAENGRQAVCLAVKFKPDIVIMDITMPNMNGSI 64 Query: 57 FLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALI----NGSYC 107 +I + P VI S I R + +V + + I G Y Sbjct: 65 ATEKIMQALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDSAFAELFDAIQAVGRGKYY 124 Query: 108 SVPEAAVSL-------------------SRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 P A +L S ++ +VL IA + T I E+L +S+KT Sbjct: 125 ISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEGVKTRQIAERLFVSIKTVE 184 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ NIM L + + L R + LV Sbjct: 185 AHRRNIMNKLMISSVAGLTRFAIQEGLV 212 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE------EEIDVMLHQNAFVIIDTLMN-NVFH 54 +I+ + ++ IL + + E + + +++D M + Sbjct: 6 VVIVDDHALVRQGLRLILHGVAGIEVVGECSCGEDALKAAVKDRPDVMLMDVHMPQGLDG 65 Query: 55 SNFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSV 109 + ++ P V VI+ + F ++++ L V + + VA I Sbjct: 66 ITTARHLRQIAPQVRVIMLTMFDDRVHVEKMLDAGVSGIVFKHDDSSEIVAAIQHGQPGH 125 Query: 110 P------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 P A LS ++ +VL +A T ++ + L IS+KT H+ Sbjct: 126 PYLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHR 185 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 +IM + L LVR+ + + LV Sbjct: 186 QHIMRRIGLHSRAALVRYAYQNGLV 210 >UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNU7_THASP Length = 220 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 40/210 (19%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQN-AFVIIDTLMNNVFHS 55 L+ MF A++ +L++ + + EE + + Q V +D M + Sbjct: 5 ILLADDHQMFRHALRALLARDPELEVVAEAASGEEVLAIADAQPVDLVCMDIAMPGMDGI 64 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKR----CLGKVPVTFVPRTIT---------------- 94 ++ P VI S F ++ L ++ + Sbjct: 65 EATRRLLARHPALRVIGLSAFADRQFVTDLLAAGARGYITKGEAGDELLRAIRTVCEGRS 124 Query: 95 ---------IIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 + D + G Y + P L+ ++ QVL IA +T+ I ++L I+ Sbjct: 125 YLCPEVAATVADALRDSPGVYAAAPR----LTARERQVLQLIAEGLTSVQIGDRLHIAAS 180 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYL 175 T H+ N+M L+L + EL R+ + Sbjct: 181 TVEVHRRNLMRKLDLHNVAELTRYAIHSGI 210 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 156 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE----EEIDVMLH--QNAFVIIDTLMNNVFHS 55 +++ ++F + M+ +L + + + + E EE ML + V +D M + + Sbjct: 6 IILVDDHSLFRSGMRGLLDRYDGIRVVGEASTGEEFLAMLPATEADVVFMDFAMPGMNGA 65 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 + L+P + VI S F R + F+ + + + + I Sbjct: 66 ETTEKALALEPGLKVITLSMFGDENYYSRMVQAGAKGFLMKDSPMDEVLRAIETVAAGGT 125 Query: 110 ---------------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 + LS ++ ++L C+ ++ ++I ++L IS +T Sbjct: 126 YFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTVD 185 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ NI+ K LV + LV Sbjct: 186 KHRANILEKTGCKNTASLVVYAVRHGLV 213 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 70/211 (33%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L+ T+ + ++L + + E E + V++D M + Sbjct: 6 VLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPELNGM 65 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + Q+++ P ++I S I L ++ + D + I+ ++ Sbjct: 66 DATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIKRSAPTDLIKAIHAAHAGDC 125 Query: 109 -----------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 P LS ++ +VL IA +I L IS K Sbjct: 126 FLSPSISKKVIKNYVQQKQGLSLEPRGLDLLSAREREVLQLIAEGHANREIAGHLYISPK 185 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H+++I L L EL ++ LV Sbjct: 186 TVEAHRNHIQKKLGLNGTAELTKYAIRKGLV 216 >UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A9E4_9BACT Length = 227 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 23/197 (11%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVML-HQNAFVIIDTLMNNVFHS 55 +I+ + + ++L + + +E +++ H V+ D M V Sbjct: 6 VIIVDDHQLMLEGIASLLRATPDITLVAKAQSAKEAFELVKQHNPDIVVADLSMPGVTGL 65 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 + + QI+ + II + + FV ++ D V +I+ + Sbjct: 66 DLIQQIKDAGLLTRIIMLTMHRTRLTVHEAFSVGANAFVLKSDAFEDLVDIIHRVHEGEN 125 Query: 110 -----------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 P A +LS ++ VL I+ ++ ++I +L IS KT H+ IM L Sbjct: 126 TLTSKGLPPYEPACAATLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHRSRIMQKL 185 Query: 159 NLKRINELVRHQHIDYL 175 N+ + ELVR L Sbjct: 186 NVTKATELVREAMRSGL 202 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 152 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 73/213 (34%), Gaps = 38/213 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN------AFVIIDTLMN 50 L+ + ++ IL + + E E I+ + + ++D M Sbjct: 30 ILLADDHALVRRGVRLILDGEPDLWVVGEAGDGAEAIEQVRRRAGTPQEVDLAVLDVAMP 89 Query: 51 NVFHSNFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGS 105 + ++ R+ P I+ + L +V +++ D V + Sbjct: 90 RMTGLQAARELSRMYPRLRILILTMHDNEQYLFEALKAGAAGYVLKSLADRDLVQACRAA 149 Query: 106 YCSVP----------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKIS 143 P E L+ ++ ++L +A ++ +I + L IS Sbjct: 150 VRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFIS 209 Query: 144 LKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 +KT H+ NI+ L +K EL R+ L+ Sbjct: 210 VKTVERHRANILAKLGMKDRLELTRYAIRTGLI 242 >UniRef50_Q021D5 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q021D5_SOLUE Length = 210 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ ++ + +L + + E E Q V++D M ++ + Sbjct: 8 VLLVDDHSLVRRGFRRMLEDDPAIVVVGEAEDGHQAVQLAGELHPRVVVMDFAMPSMNGA 67 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 I R P I+ + ++ CL ++ + ++ VA + Sbjct: 68 VAARHILRTAPETAILILSMHAEASYVRTCLEAGVRGYLLKNALDLEMVAAVKQVAAGKQ 127 Query: 108 -----------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 A L+ ++ +VL I + + ++I L +S T H+ NIM Sbjct: 128 VLDRRLGALDLPSGAAPAGLTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAVHRANIMQ 187 Query: 157 ILNLKRINELVRHQHIDYLV 176 L + ELV + LV Sbjct: 188 TLGIHNTAELVVYAIRQGLV 207 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 151 bits (383), Expect = 8e-36, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQ-NAFVIIDTLMNNVFHS 55 L++ + + +L+ + + + + E +D + V++D + + Sbjct: 5 VLVVDDHAVLGKGLSMLLNSQDDMEVCGQVGTAKEALDTCKEKCPDVVLLDLSLPDKQGH 64 Query: 56 NFLTQIERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC---- 107 + +++ V+ + KR + ++ + + ++ I Y Sbjct: 65 EIIKELKESCSARVLALTMHEDEAYFKRVVEAGGDGYILKKAADDELISAIRSVYQGEVI 124 Query: 108 -------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 S E LS ++ +VL IA T ++I EKL IS+KT Sbjct: 125 VDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKEVLQLIALGYTNKEIAEKLYISIKTVE 184 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H I L L R +ELVR+ + ++ Sbjct: 185 THIARIKEKLGLNRRSELVRYAMRNNII 212 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 151 bits (382), Expect = 9e-36, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 36/210 (17%) Query: 3 LIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHSN 56 ++ + ++ ++ + E E + + + V++D M + Sbjct: 1 MVADDHEVVRRGVRALVESHPGWTVCGEASNGREAVRLAQELRPDVVVLDVTMPELNGLE 60 Query: 57 FLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSYCSVP- 110 +I P II + + L +V + V I+ P Sbjct: 61 ATREIRASVPDTEIILLTVHDSDQLLGQALDAGARGYVLKEDAARHLVDAIDALSKHAPY 120 Query: 111 ------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 SL++++ +VL +A + ++ +L IS KT Sbjct: 121 VPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKT 180 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N+M L I +LV + + +V Sbjct: 181 VETHRANVMRKLGASSIVDLVHYAIRNGIV 210 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 76/206 (36%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 L+ + +K +L++ + + EE + + + ++D +M + Sbjct: 5 ILLADDHKILREGVKALLNRQEDMEVVAEAGNGEEALSIAGEIRPDVTVMDVMMPQMDGI 64 Query: 56 NFLTQIERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV-- 109 +I V+ S + + L + F+ + + V + Sbjct: 65 EATRRIVEDGSSRVVALSMYADRSFVSEMLKVGALGFLLKDCASTELVEAVRKVMDGEIY 124 Query: 110 -------------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 P+ L+ ++ ++L +A T ++ E+L +S+KT H Sbjct: 125 LGPSISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTH 184 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + +IM L LK + +LV++ + ++ Sbjct: 185 RQHIMNKLKLKNLADLVKYAIRNGMI 210 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L+ + ++ +L + I E Q VI+D M + Sbjct: 9 ILLADDHDIVRRGLRTLLELRSDWEICAEASDGRAAVQFAEDLAPDIVILDLSMPELNGL 68 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALING------ 104 +I P ++ + ++ L ++ +T D ++ Sbjct: 69 EAARRIAAHCPRSRMLMLTMHETEQFVREALAAGVRGYILKTDAGRDLANAVDALIRGET 128 Query: 105 ------------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 ++ L+ ++ ++L +A D+ + L IS+KT Sbjct: 129 FFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALNISVKT 188 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ IM L + + +LVR+ + L+ Sbjct: 189 AETHRARIMAKLGIDSVADLVRYAIRNGLI 218 >UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC-HTH domains) n=30 Tax=Bacillales RepID=B7GL14_ANOFW Length = 260 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 44/219 (20%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-EEIDVML-----HQNAFVIIDTLMNNVFHS 55 ++I +F +K IL + E + D L ++ VI+D M +V Sbjct: 39 IVLIDDHKLFREGIKRILDFEQDFEVVAEGSDGDEALALVERYKPDVVIMDINMPHVNGV 98 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN----GSY 106 Q+ P VII S + L + ++ + + + + G Sbjct: 99 EATRQLIEAYPDTKVIILSIHDDESYVMHALQTGAMGYLLKEMDADALIEAVRVVAEGGS 158 Query: 107 CSVP-----------------------------EAAVSLSRKQHQVLSCIANQMTTEDIL 137 P L+R++ +VL +A+ + + I Sbjct: 159 YLHPKVTHNLVKEYRRLVAGEGGGKEKQNQDVCRPYHLLTRRECEVLQLLADGKSNKGIA 218 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 + L IS KT H NI+ LN+ + V + V Sbjct: 219 DALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNGWV 257 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 41/214 (19%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-EIDVMLHQ-----NAFVIIDTLMNNVFHS 55 ++ + +K ILS I E + + L Q VI D M + Sbjct: 8 IFLVDDHAILREGLKMILS--GQFEICGESGDAEKALDQIGKLNPDLVITDISMPGLSGI 65 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + + + + P + II S +++ L +V + D + I + Sbjct: 66 DLVKNLRKQYPNIRTIILSRHDNREYVQKLLELGINGYVLKDDAGNDLLRAIEAVHKGET 125 Query: 109 --------------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 +A LS ++ ++L +A + E I + L I Sbjct: 126 YLSPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKILGI 185 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 S T H+ NIM LNL ++ +LV + L+ Sbjct: 186 SPATVKVHRANIMKKLNLHKVADLVMYAIRAGLI 219 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L+ T+ ++ +L + + H V++D M + Sbjct: 6 ILLADDHTVVRKGLRLLLESHPGFQVIGDAADGRDAVSLAGEHTPDVVVMDVAMPGLNGI 65 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALING------ 104 QI P I+F + + + L ++ + D +A + Sbjct: 66 EAARQISAKLPHTAIVFLSMHSDESYVLKALKAGARAYLLKDSAEHDLIAAVIAVSEGKA 125 Query: 105 ------------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + ++ L+ ++ +VL +A +++ L +SL T Sbjct: 126 FFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSLYT 185 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ NI+ LNL EL+ + ++ Sbjct: 186 VETHRGNILQKLNLHSGAELILYAIRKGVI 215 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 86/210 (40%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLH------QNAFVIIDTLMNN 51 +I+ M +K L + + E E +L Q +++D +M Sbjct: 15 VMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGLREGQPDIILMDLMMPG 74 Query: 52 VFHSNFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSY 106 + + ++ P ++I + F + + + V++V +T++ + + + G+Y Sbjct: 75 MNGAEATKEVRSRFPDMKIVILTSFLEDDLVVQAVEAGAVSYVLKTVSAEELIYALQGAY 134 Query: 107 CSVP----EAAVSLSR----------------KQHQVLSCIANQMTTEDILEKLKISLKT 146 +P E A +L+R ++ +VL IA + +DI E+L IS+KT Sbjct: 135 RGMPVMTGEVAQALTRGLRQRTVQGDDSGMTEREKEVLLLIAEGKSNKDIAEELHISIKT 194 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H N++M L+ +L + H V Sbjct: 195 VKTHVSNLLMKCELEDRTQLAIYAHRQGWV 224 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 34/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-----IDVMLH-QNAFVIIDTLMNNVFHS 55 L+ + ++ +L +++ E E I + +I+D M ++ Sbjct: 5 VLLADDHKIVRDGLRTLLETHGSMNVVAEAENGQKTITLARELHPEIIIMDISMPDMNGI 64 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + +I P + VI S + L ++ + + V I + Sbjct: 65 DATRKITSDLPGIKVIALSMHADRHFVIGMLEAGASGYLLKDCAFEELVNAIQTVLSNHT 124 Query: 111 -----------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + L+ ++ ++L +A ++ + I L +S+KT Sbjct: 125 YLSPTIADIVVKNYVHKAAGTSVVVSSELTPRERELLQLLAEGLSAKQIAANLHVSVKTV 184 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYL 175 H+ NI L + + EL+++ + L Sbjct: 185 ETHRRNITQKLGVGSVAELIKYAIREGL 212 >UniRef50_C0QJ84 Two-component response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ84_DESAH Length = 218 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVM-LHQNAFVIIDTLMNNVFHS 55 L++ + ++K L + V + + + + H VI+D M ++ Sbjct: 8 ILLVDDHDILRQSLKKALEEKPNVKVLQGACNGLDAVRLTEKHCPNIVIMDINMPDLNGI 67 Query: 56 NFLTQIERLKPV-HVIIFSP----FNIKRCLGKVPVTFVPRTITIIDF----VALINGSY 106 QI P +I S FN+K + F+ +T ++ D + + +G Sbjct: 68 EAAKQIISKNPDIKIIALSMLCDEFNVKSMIQAGAKGFLLKTSSLEDLHTAILMVASGKS 127 Query: 107 CSVPEAA-------------------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 PEA L+ ++ V+ IA T+++I EKL IS +T Sbjct: 128 YLCPEALNIMMEDIQTPGDTKLLCPLQRLTLRERGVIQLIAEGYTSQEISEKLNISKRTV 187 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N M L + I L R + L+ Sbjct: 188 DVHRTNTMNKLKIHTIAGLTRFAVKEGLI 216 >UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ8_HALOH Length = 209 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ +K L+ + I E+ I + ++D + + Sbjct: 4 VYLVDDHPFVLQGLKAYLNTREGIEIVGTSGNGEKAIKEIAKLNPEVAVVDLRLPGLNGI 63 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 +I++ P VII S FN + + +++V + V I + P Sbjct: 64 EVTREIKKKNPGTEVIILSSFNKEDEVIEAIDAGALSYVMKDSRPEKLVEAIKAARRGEP 123 Query: 111 ------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 L+ ++ +VL+C+ + DI + L IS T H Sbjct: 124 VLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLCISETTVKTHVS 183 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 NI+ L++K + V + LV Sbjct: 184 NILKKLDVKDRTQAVIKAIENNLV 207 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 65/207 (31%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 L++ + + +L + + E E +++D M + Sbjct: 17 LLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPDVILMDVSMPGMNGI 76 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGS----- 105 I+ +P V +++ + + + L ++ + + + + + Sbjct: 77 EATRAIKAERPGVGILVLTSYDDDAYVFALLEAGAAGYLLKNASEDELLGAVRAVAAGES 136 Query: 106 ----------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + + +LS ++ +VL A T ++I L IS +T Sbjct: 137 ALHPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQV 196 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H NI L + E V + + Sbjct: 197 HLANIFSKLGVGSRTEAVLYGIKRGWI 223 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ + +K +L + E E ++++ Q ++ D +M + Sbjct: 4 IVLADDHQIVRHGLKALLEAEADFEVVGEASDGIEAVNLVESLQPGVLVTDLMMGGMSGI 63 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALING-----S 105 Q+ + P V+I S + + L +V + T + V + Sbjct: 64 EVTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGARAYVLKDSTSEELVRSVREAVQGHR 123 Query: 106 YCSVP-------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 Y S P + +L+ ++ +VL +A T +I E+L IS +T Sbjct: 124 YLSSPLSEKAIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISPRT 183 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N+M L+L+ +L+R+ ++ Sbjct: 184 VEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 149 bits (376), Expect = 5e-35, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 77/210 (36%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ T+ +K +L+ + + E + V++D M + Sbjct: 7 VLLVEDHTIVREGLKALLTATEDLEVVGEVADGRAAVEAAERLAPDVVVMDINMPKLDGV 66 Query: 56 NFLTQIE-RLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 +I ++ V+I S + ++ + ++ + + D V I Sbjct: 67 GATREIREKVNAPRVLILSMYDGEEYVRPAIRAGASGYLLKGSGLSDLVTAIREVAGGNA 126 Query: 104 -----------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 S P+ A SL++++ +VL+ + ++ +I + L +S+KT Sbjct: 127 FFSPTVAKILLQESRGERSVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSVKT 186 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ IM L + + LVR LV Sbjct: 187 IEGHRGRIMAKLGVHNVAGLVRQAIRIGLV 216 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 40/215 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 L++ T+ +K L HI E + + VI+D M + Sbjct: 6 ILLVDDHTIVRDGIKATLKDQKNFHIVGEAANGLDGIEAVKQLKPDVVIMDITMPEMSGI 65 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 I + P V+I S I + + ++ + + +F+ I Y Sbjct: 66 EAADVISKKYPDSKVLILSMHDNETYILKSVEAGAYGYLLKDVDKDEFIKAITAVYNGDK 125 Query: 111 -----------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLK 141 L++++ +L I + +I + L Sbjct: 126 YFNTAISSVLVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIADGLG 185 Query: 142 ISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 IS++T H+ NIM L +K ELVR + +V Sbjct: 186 ISIRTIETHRANIMKKLKVKNAVELVRIAIDEKIV 220 >UniRef50_B9XC41 Two component transcriptional regulator, LuxR family n=7 Tax=Verrucomicrobia RepID=B9XC41_9BACT Length = 267 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 73/210 (34%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLHQ--NAFVIIDTLMNNVFHS 55 L+ T+ ++ +LS + I E E M + +++D M + Sbjct: 33 VLLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLTPDVILMDIAMPLMNGL 92 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 +I + P V++ S + +++ ++ + D VA + ++ Sbjct: 93 EATRKIAEVAPSAKVLVLSSYGEDDYVQKLTEAGASGYLIKHAAANDLVAAVRETHKGNA 152 Query: 111 ------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 +A+ L+ ++ + L I + I + IS+KT Sbjct: 153 FFSPGIAKRLRDQVRAGFANGNGTKASFELTERELETLGHIVAGKPNKVIACDMGISIKT 212 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ +M LN+ + L R+ ++ Sbjct: 213 VEKHRQQVMNKLNIHEVASLTRYAIAKGMI 242 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 147 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 +I T+ +K++L + + E M +Q V++D M + Sbjct: 7 LIIAEDHTLLREGLKSLLQSVPHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRMDGV 66 Query: 56 NFLTQIERLKPV-HVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 I++ P V++ + + L +V + + +F+ + Sbjct: 67 QATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAVESVLGGKI 126 Query: 107 --------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 SV + +L+ ++ ++ +A +I E L +S+KT Sbjct: 127 YLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVKT 186 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N+M L + EL ++ Sbjct: 187 VEKHRSNLMQKLGVHSAAELRALALERGII 216 >UniRef50_O32197 Transcriptional regulatory protein liaR n=142 Tax=Firmicutes RepID=LIAR_BACSU Length = 211 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 L+I M + L + + E + +++D +M + Sbjct: 4 VLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGI 63 Query: 56 NFLTQI-ERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 QI L +I+ + F + + ++++ +T + I + P Sbjct: 64 EATKQICRELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEP 123 Query: 111 E---------------------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + SL++++ ++L IA T ++I E+L I++KT Sbjct: 124 KLESKVAGKVLSRLRHSGENALPHESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKT 183 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H NI+ L++ + + H ++LV Sbjct: 184 HITNILSKLDVSDRTQAAVYAHRNHLV 210 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVM-LHQNAFVIIDTLMNNVFHS 55 +++ + L + + + E ++++ LHQ V++D M + Sbjct: 11 VVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMPIMNGI 70 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSY---- 106 I+ P ++ + R + + ++ + I+ + V I + Sbjct: 71 EATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEISALKMVQAIKTVHQGAT 130 Query: 107 ---------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 V LSR++ +L +A +++ I L IS +T H+ Sbjct: 131 YFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHR 190 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 NI L++ EL ++ L+ Sbjct: 191 QNIKHKLDIHSTAELAQYALQHGLL 215 >UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=C6E2Z1_GEOSM Length = 216 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 76/209 (36%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 +++ ++ ++ +L + + + E + + V++D M + Sbjct: 4 VMVVDDHSIVREGIRILLERFPDLSVVAEADNGRKASELAADLAPHVVLMDMTMPGLNGI 63 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKRCLG----KVPVTFVPRTITIIDFVALINGSYC--- 107 + ++ P V+I S KR + ++ + + V + C Sbjct: 64 DATQRLLAACPEVRVLILSMHKDKRFVSQAFRAGARGYLLKDCASAELVQAVRQVACGEM 123 Query: 108 --------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 S+ + V L+ ++ +VL IA ++ +L I++KT Sbjct: 124 YVCHGIIGVVVHDYVTRLPESLTQPEVPLTPREREVLQLIAEGNNAKNAAYQLNINVKTV 183 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ IM L ++ + EL ++ + L+ Sbjct: 184 DTHRQQIMKKLKMRSVAELTKYAIREGLI 212 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 LI+ +F +K+++ + E E + + + V +D + ++ Sbjct: 6 VLIVDDHPLFREGVKSLVERSANYQAVGEAGCGAEALALAQELKPDLVTMDVSLPDMSGI 65 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVAL--------- 101 + I L P +++ S + + +V + T + Sbjct: 66 EVVRGILDLAPETRILMLSMYPKFDYVAEAFKAGAKGYVVKETTTARLIQGFDALCRGEF 125 Query: 102 -----------------INGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 E L+ ++ QVL +A +T I +++S Sbjct: 126 FVDGQVSQDLVAKLAQGAARDQALQDEKYGLLTPREQQVLRLVAEGSSTRQIAAAIELSP 185 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 KT H+ N+M L++ ELV++ L+ Sbjct: 186 KTVENHRTNLMKKLDVHSKMELVKYAARLGLI 217 >UniRef50_C7PEC4 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEC4_CHIPD Length = 207 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 27/201 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 ++ T+F ++++L + + +Q +L HQ I+D M + Sbjct: 7 IILADDHTLFADGIRSLLEQTPYITVQGIASNGQVLIEMLQRHQPDLAILDISMPVLNGL 66 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKRCLG----KVPVTFVPRTITIIDFVALINGS----- 105 I + P + II S ++ + ++ +T D + I Sbjct: 67 EVTKIIRKDMPHIRTIILSSYSDPHLISLSRSYGADGYLMKTCNQYDLLQTITRVVRGES 126 Query: 106 -YCSVPEAAVS----------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + +P + L+R++ ++L I Q T + I L +S+ T H+ NI Sbjct: 127 CFPQLPRIQEAEIDHSFREFNLTRRELEILHLINQQFTNQQIATHLYLSIYTVETHRKNI 186 Query: 155 MMILNLKRINELVRHQHIDYL 175 M L LK L R L Sbjct: 187 MQKLQLKSPAALTRFLLEKGL 207 >UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microscilla marina ATCC 23134 RepID=A1ZEE6_9SPHI Length = 213 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-------EEIDVMLHQNAFVIIDTLMNNVFH 54 F I+ T+ +K +L+K + + E + + V+ D + + Sbjct: 4 FYIVEDHTIVRQGLKQLLAKYAEMKVLAEFGVPDQIMDNLAKGERPDIVLCDINLPGMDG 63 Query: 55 SNFLTQIERLKPVHVIIFSP-----FNIKRCLGKVPVTFVPRTITIIDFV---------- 99 +I++ P II F + + + + + + Sbjct: 64 LALTEKIKQKYPDQKIIILTMHQKEFYVLKAFDAGADGYFHKDTEESELIMGIKKIYNGQ 123 Query: 100 -------------ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 L++ S +L+ ++ +VL + + +I +KL IS +T Sbjct: 124 KYFCQSVSQILINRLLDTKNSSGKTLLPTLTFREKEVLEQVVAGLGNREIGDKLCISTRT 183 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ NI+ LK ELV+ + LV Sbjct: 184 VENHRANILRKFGLKNTVELVKFAIENSLV 213 >UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG8_SYMTH Length = 197 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 38/196 (19%) Query: 18 ILSKGNVVHIQNEE-------EIDVMLHQNAFVIIDTLMNNVFHSNFLTQIERLKPVHVI 70 +L + + E E+ L + VI+D + ++ I+ P + Sbjct: 1 MLQSEPDLELVGEAGRGEEAVELTKAL-KPDVVIMDISLPDMSGIEATRLIKEAVPETRV 59 Query: 71 IFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALI----------------------- 102 I + + L ++ + D V I Sbjct: 60 IGLTMHEEEPFVLEFLRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYV 119 Query: 103 --NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNL 160 G PE L+ ++ ++L IA +T +I +L IS KT H+ N++ L + Sbjct: 120 SRPGRAVGQPEEPCPLTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGI 179 Query: 161 KRINELVRHQHIDYLV 176 ELVR+ LV Sbjct: 180 HDRTELVRYAIRQGLV 195 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 74/207 (35%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 LI+ T+ + ++ +LS + + E + V++D M + Sbjct: 6 VLIVDDHTLMRSGLRLMLSAQEDIEVVGEAADGSGGIAMAQKMRPDVVLLDISMPEMSGL 65 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 L + +P +I + +K + +V + + Y Sbjct: 66 ECLKTLLANQPDLRVILLTMHEDARYVKEGFALGAMGYVLKKAADDVLYQAVRAVYSGEM 125 Query: 109 -------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + LS ++ +VLS IA +I E+L IS+KT Sbjct: 126 YIQPSITKAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVISVKTVET 185 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 +K+ IM LN K+ ++LV+ + L+ Sbjct: 186 YKYRIMEKLNCKKRSDLVKFALDNGLL 212 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 77/203 (37%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ T+F + ++LS + I E + + ++ ++D M + Sbjct: 4 IIMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLNGL 63 Query: 56 NFLTQI-ERLKPVHVIIFSPFNIKRCL----GKVPVTFVPRTITIIDFVALINGSYCS-- 108 + + ++ E +P +++ + + + +V + + + I Sbjct: 64 DVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAVAAGKR 123 Query: 109 ---------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 + + V LS ++ +V+ +A+ T ++I L IS KT H+ Sbjct: 124 FVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHRTR 183 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 +M LNL ++VR+ LV Sbjct: 184 LMRKLNLHTTADVVRYAMRMGLV 206 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 145 bits (367), Expect = 5e-34, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMNNVFHS 55 L+ +F ++ +L + + + E V++D M Sbjct: 89 VLVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPKRTGI 148 Query: 56 NFLTQIERLKPVHVIIFSP-----FNIKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 I+ + P II ++ + + ++ + I+I + A I + Sbjct: 149 EACAAIKEVCPSAKIIMLTISDEEADLYEAIKAGAMGYLLKEISIDEVAAAIRAVHGGQS 208 Query: 107 ----------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 A L+ ++ +VL +A + DI ++L IS Sbjct: 209 LISPSMASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQLFISE 268 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H NI+ L L E V + + L+ Sbjct: 269 NTVKNHVRNILEKLQLHSRMEAVVYAVREKLL 300 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 144 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 30/203 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L++ + + L I E E + V++D M + Sbjct: 17 LLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKMDGI 76 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALI-------- 102 QI++ + ++I S F + L + + + VA I Sbjct: 77 EATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQPEQLVASIIAIYEGNA 136 Query: 103 -----------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 S L++++ +VL IA + ++I +L I+ +T H Sbjct: 137 NFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHV 196 Query: 152 HNIMMILNLKRINELVRHQHIDY 174 NI+ L + + + Sbjct: 197 SNILAKLEVDDRTQAALYAVKHG 219 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 144 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 70/201 (34%), Gaps = 26/201 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 LI+ M +++IL + + E +++D M +V Sbjct: 26 VLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVPDVILMDLNMPDVGGL 85 Query: 56 NFLTQIERLKPV-HVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + I+ P V+I S P I L V +V + + + I+ Sbjct: 86 SATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLKDVQPEEIKTAIDAVMRGEQ 145 Query: 108 ------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 + +L+ ++ +L +A + +++ + L IS++T H+ NI Sbjct: 146 YLCTGAAGSLSPQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIK 205 Query: 156 MILNLKRINELVRHQHIDYLV 176 L + L R+ ++ Sbjct: 206 RKLGISSTAGLTRYALEHGVL 226 >UniRef50_A8G0P8 Two component transcriptional regulator, LuxR family n=16 Tax=Gammaproteobacteria RepID=A8G0P8_SHESH Length = 209 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 18/190 (9%) Query: 2 FLIITRDTMFFTAMKNILSK--GNVVHIQNEEEI--DVMLHQNAFVIIDTLMNNVFHSNF 57 ++ D ++ +L + N+ N ++ V L + A VI+D+ M V Sbjct: 7 LYLVDDDIAILDSLSFMLGQFGYNITAFNNGDDFLNTVPLERPACVILDSRMPEVSGQEV 66 Query: 58 LTQIERLKPVHVIIFSPFNIKRCLG-----KVPVTFVPRTITIIDFVALINGSYC----- 107 ++ + IIF + + K F + ++ I+ + Sbjct: 67 QQKLLEIDSPLGIIFLTGHGDMPMAVDAFRKGACDFFQKPVSGKALSCAIDKAMLYSHRT 126 Query: 108 ----SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 S+ +LS ++ +VL+ + MT + I E L +SL+T H+ +M L + + Sbjct: 127 FEAQSLKRKLSTLSEREQEVLNLLTKGMTNKQISEALFLSLRTIEVHRAKVMKKLEVHNM 186 Query: 164 NELVRHQHID 173 EL ++ + Sbjct: 187 AELAKYSQMS 196 >UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Actinomycetales RepID=D2BDI1_STRRD Length = 227 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 67/205 (32%), Gaps = 31/205 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 L++ + ++ +L + + E E I ++L V++D +M V Sbjct: 21 VLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDLVMPGVTGI 80 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + +P ++ + + L +V + DF+A + Sbjct: 81 EATRTLIDRRPDLGVLVLTMSEDDASVFAALRAGARGYVLKGADGNDFIAAVRAVARGEA 140 Query: 108 -----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 L++++ ++L +A+ + +I +L +S KT H Sbjct: 141 VYGPAVARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRLFLSQKTVKNH 200 Query: 151 KHNIMMILNLKRINELVRHQHIDYL 175 +I L + + V L Sbjct: 201 LTSIFAKLQVADRTQAVVRARRAGL 225 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 74/211 (35%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L+ T+F ++ +L+ + + E + + V++D M + Sbjct: 6 ILLTDDHTLFRQGVRTLLAAEADMEVAGEAANAMDAVALAQQLRPDVVLMDIGMAGMSSF 65 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFV----------- 99 I + +P VI S + + C+ ++ + + Sbjct: 66 EATRLIRKERPEVKVIFLSMYDDEDYLAECVDMGANGYILKDSPADQLITAIREVQRGGS 125 Query: 100 --------------ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 L + +L++++ ++L +A + ++I ++S+K Sbjct: 126 YLSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVK 185 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T HK N+M L++ +LV++ ++ Sbjct: 186 TVEAHKFNLMRKLDIHNKAQLVQYAIQKKII 216 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 66/201 (32%), Gaps = 32/201 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM----------LHQNAFVIIDTLMNN 51 L+I + M+ L+ +++ E + + VI D M Sbjct: 21 VLLIDDHALVRDGMRMHLTLQPDLYVVGEADGGEAALAWLERAGARERPDLVITDIGMRG 80 Query: 52 VFHSNFLTQIERLKPVHVIIFSPFNI-----KRCLGKVPVTFVPRTITIIDFVALINGSY 106 + + P ++ + ++ + +V + + +A I Sbjct: 81 MGGIALTAALHEQYPEIAVLVVSMHDNLEYARQAVRAGARGYVLKDAPADELMAAIEAVL 140 Query: 107 C-----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 +L+R++ +L CI M ++I +L +S++T Sbjct: 141 AGRVFYSARIARGMAEQMPATGPLDALTRRERDILGCIGRGMANKEIATQLGVSVRTVET 200 Query: 150 HKHNIMMILNLKRINELVRHQ 170 H+ N+ L ++ LV++ Sbjct: 201 HRLNLKRKLGIEGRAGLVKYA 221 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVML-HQNAFVIIDTLMNNVFHS 55 LI + ++ +L + + E +D+ L H V++D M Sbjct: 13 VLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLALQHVPDVVVLDITMPEESGL 72 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 ++ P ++ + ++ + ++ + + A I + Sbjct: 73 KAAARLREALPDTRVLLLSMHDQGEYVREGMRIGTHGYLLKDSAGEELRAAIRAVHAGGT 132 Query: 108 -------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 + L+ ++ VL+ +A +T + I +L IS +T Sbjct: 133 FFSPAVVRRLTSTEVVSEGAPAAQLDLLTPRERDVLAGVARGLTNKAIAAELGISRRTVE 192 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ ++M L + + L R ++ Sbjct: 193 AHRESLMRKLQIHSVAGLTRFALETGII 220 >UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9H4_DESAH Length = 217 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 72/207 (34%), Gaps = 34/207 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHS 55 +I M + ++ V + E E ++++ Q VI+D M + Sbjct: 6 VVIADDHAMLRRGICQVIETQEGVSVVGEVGDGIELLNLLSTQPADLVILDISMPKMSGI 65 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALING------ 104 +I P I+F + + ++ + T + + ++ Sbjct: 66 EAAKKIRATYPGIKILFLSMHKRNEYLYHAFSAGANGYLLKEDTDTEILTAMDTILEGKA 125 Query: 105 -----------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 +LS ++ +VL+ +A + + I + L IS +T Sbjct: 126 FLSSIFTKDMPDILTDMVKNGSSFPGGTLSPREEEVLTLLAEGKSNKKIADILCISTRTV 185 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDY 174 H+ +IM L+L+ + +L+++ Sbjct: 186 EHHRASIMKRLDLRTLADLIKYAIRHG 212 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVML-HQNAFVIIDTLMNNVFHS 55 L++ + + +L+ + E I + HQ I+D + + Sbjct: 12 ILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLRLPRMNGV 71 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 +T+I P +++ + F+ I R L ++ + + D A I + Sbjct: 72 EAITRIREESPGARIVVLTTFDGDEDIYRALQAGARGYLLKGMDADDLTAAIRSVHAGKS 131 Query: 111 EAA-------------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 L+ ++ VL I + +I L IS T H +N++ Sbjct: 132 RIPTVVAERLAERMSGSELTARELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSK 191 Query: 158 LNLKRINELVRHQHIDYLV 176 L + + LV Sbjct: 192 LGVSDRTQAATTALQRGLV 210 >UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus RepID=A0R9S0_BACAH Length = 216 Score = 142 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 77/207 (37%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-EEIDVMLHQ-----NAFVIIDTLMNNVFHS 55 L++ A+++IL + +++ E D +L + +++D + Sbjct: 7 ILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEACRPDCILMDINLPGKNGI 66 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALI-------- 102 +++ P V++F+ + + L ++ + + VA I Sbjct: 67 EATELVKKNYPNCRVLVFTMYEHDEYLMDALQAGADGYLLKDSSSEQVVAAIRMLYRGDS 126 Query: 103 -------------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + V L+ ++ ++L + ++ ++I E L IS KT Sbjct: 127 VIHPRMTKKLITYHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKI 186 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H + I LN+K ++ V + + LV Sbjct: 187 HINKIFKKLNVKSRSQAVIYAVRNQLV 213 >UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms RepID=B9PAD6_POPTR Length = 326 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 30/199 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM----------LHQNAFVIIDTLMNN 51 L+I + M+ L+ + + E + VI D M Sbjct: 117 VLLIDDHALVRDGMRMHLTLQPGLEVVGEADDGEAALAWLAAAEAGRMPDLVITDIGMRG 176 Query: 52 VFHSNFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFV------- 99 + + P ++ + +++ + +V + + + Sbjct: 177 MGGIALAGALHDRYPELAVLIVSMHDNLEYVRQAIRAGARGYVLKDAPADELLAAIQAVL 236 Query: 100 --------ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 + G +L+ ++ +L I +DI +L +S++T H+ Sbjct: 237 AGRVFYSARIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGVSVRTVETHR 296 Query: 152 HNIMMILNLKRINELVRHQ 170 N+ L ++ ELV++ Sbjct: 297 LNLKRKLGIEGRAELVKYA 315 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 76/212 (35%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 LI+ +F +K IL + + E E + + ++D + + Sbjct: 6 LLIVDDHPLFREGLKAILRRDPSYAVAGEAGSYAEALRTAKDCRPDLAVLDISLPDRSGI 65 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 ++ ++ P I+ + + L + ++ + + ++ + P Sbjct: 66 QLARELRQMLPSLGILMVSMHAKVDYVAEALKVGALGYLTKDAATDNLLSGLRAVAAGQP 125 Query: 111 --------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 A SL+ ++ +V+ + ++ +++ L+IS+ Sbjct: 126 WLDPTLSVEISRSLLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAALEISV 185 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 KT H+ ++M L ++ ELVR+ L+ Sbjct: 186 KTAEHHRGSLMRKLGMQNSVELVRYATKLGLI 217 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 142 bits (358), Expect = 6e-33, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 77/210 (36%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVM-LHQNAFVIIDTLMNNVFHS 55 LI + ++ ++ + E E ++++ Q V++D M + Sbjct: 6 VLIADDHQVMRRGVRAVVELLEGWEVCGEASTGREAVEMVEKLQPQIVVMDVTMPELNGL 65 Query: 56 NFLTQIERLKPVHVIIF-----SPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 QI+++ P I+ + I++ +++ +T A + P Sbjct: 66 EATRQIKKIAPATEILMFTGLETEELIRQVFEAGARSYILKTDGREQLEAALTALAAHKP 125 Query: 111 ------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 L+ ++ +++ +A + +++ + L IS+KT Sbjct: 126 YFTTQVGEILFAKFLHGKPKDEEQTVDGRLTDREREIVQLLAEGASNKEVADSLGISVKT 185 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ IM L K ++LVR+ ++++ Sbjct: 186 VETHRAAIMKKLKFKSFSDLVRYAIRNHII 215 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 74/202 (36%), Gaps = 27/202 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 ++ + ++ ++S + + E V + + +D M + Sbjct: 6 IVLADDHVILREGLRALISAQPDLEVVGEAASGTETVDCVRATEPRVLCLDLSMPGWGSA 65 Query: 56 NFLTQIERLKP-VHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 +T++ +L P V++ + P ++ L + +T D +A I Sbjct: 66 TTITRVTQLAPRTRVLVLTMHNDPAYVRSALAAGAAGYFLKTTPSPDLLAAIRAVATGAR 125 Query: 108 -------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 P LSR++ +VL + +T ++I ++L +S+KT ++ + Sbjct: 126 VIDPALGDVLGGPPPPAERSQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARL 185 Query: 155 MMILNLKRINELVRHQHIDYLV 176 LK + VR+ L+ Sbjct: 186 REKTGLKTRADYVRYGLEAGLL 207 >UniRef50_B8D0J2 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0J2_HALOH Length = 211 Score = 141 bits (357), Expect = 7e-33, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L+ + + +L + + E + H V++D M + Sbjct: 6 VLVADDHDLVREGICKLLELYEDIKVVGEAGDGLETVKGVRDHFPDLVLLDLNMPRMGGI 65 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + +I+ + P + V+I + + + ++ + + + I+ Sbjct: 66 TAIKKIKEISPGIKVLILTIHDEEEYVYEVIRSGAEGYIQKDVKPEELKRAIDKVIKGDK 125 Query: 109 -VPEAAV--------------SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P + LS ++ +VL +A M+ + I ++L IS KT H N Sbjct: 126 VFPRSTENEVREVVNEKYEVCELSSREQEVLELLAQGMSNKQIAQELFISEKTVKNHVSN 185 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I+ L++ + V LV Sbjct: 186 ILRKLSVNDRTQAVIVALKRGLV 208 >UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W2Z0_DYAFD Length = 205 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 26/201 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 LI+ + +K++L+ V + E + ++ +D + ++ Sbjct: 5 ILIVDDHPLVLEGLKSLLADAEGVQVVGTATNAIEAIAFLKGNEVDIAFLDINLPDISGI 64 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + +++ P + S FN + R + ++ ++ D + I Sbjct: 65 DLCKKVKDQFPEVKTLALSTFNERAYVSRMIQNGASGYLIKSSGKEDILEAIAQVQAGGY 124 Query: 108 ------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 + P+ L+R++ +VL IA +T I E+L IS+ T H+ N++ Sbjct: 125 FMNVQFDQVTPATAPKTVPFLTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLL 184 Query: 156 MILNLKRINELVRHQHIDYLV 176 + + L++ L+ Sbjct: 185 IKFEVSNTASLIKLAAGLGLI 205 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 34/207 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 L+ MF ++ +L K + + + E Q ++D M + Sbjct: 5 VLLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERLQPDVALMDMTMPRLNGI 64 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKRC----LGKVPVTFVPRTITIIDFVALI----NGSY 106 +I P V++ S K L +V + + + I NG Y Sbjct: 65 QATQKIAAGSPGTKVLVLSMHGDKNLIVESLKAGARGYVLKECSSQELCLAIQTVANGQY 124 Query: 107 CSVPE-------------------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 P + LS ++ VL + + I E+L IS T Sbjct: 125 YLTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSISKNTV 184 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDY 174 H+ +I+ L + EL R+ + Sbjct: 185 DTHRRHILDKLGCNSMAELTRYAIREG 211 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMNNVFHS 55 L++ + ++ +L + + E E Q +++D + N Sbjct: 4 ILLVDDHAVLRAGLRLLLESQPDMVVVGEAEDSRTAITQATTLQPDLILLDLSLTNSSGL 63 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 + + P I+ + +++ L +V + + +A I Sbjct: 64 AAIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLKRAADAELIAAIRAVLRGEL 123 Query: 107 --------------CSVPEAA---VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 P+ SLS ++ +VL +A T +I +L +S KT Sbjct: 124 YIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAGQLNLSPKTVET 183 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 ++ M L L+ LV+ L+ Sbjct: 184 YRTRGMEKLGLRSRAALVQFALDHNLL 210 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ T+ + + +L + + + + E E +Q ++D M + Sbjct: 8 VLLVDDHTVVRSGLCRLLEQHSGIKVVAEAESGEQAYQVFGEYLPDVTVMDLSMPGMGGL 67 Query: 56 NFLTQI-ERLKPVHVIIFSPFNIKRC----LGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + +I R + V+IFS L +V +T + + V + Sbjct: 68 EAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAKTGSFDELVKAVVEVARGKS 127 Query: 111 -------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 + LS ++ +V A E+I E LKIS KT + Sbjct: 128 YISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQKTVANYH 187 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 + L L E+VR L+ Sbjct: 188 TLVKQKLGLSNPVEMVRFAIKHGLI 212 >UniRef50_B3RA82 Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) n=1 Tax=Cupriavidus taiwanensis RepID=B3RA82_CUPTR Length = 223 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 28/197 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN-----EEEIDVM-LHQNAFVIIDTLMNNVFHS 55 L++ ++ L + + EE I + H V+ D M + Sbjct: 7 VLLVDDHPFVLDGVRLRLEATGEMTVIGQAASVEEAIVLAGRHAPDLVVSDIHMPDANGL 66 Query: 56 N-FLTQIERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 E+ V VI S P ++R +V + + V I Sbjct: 67 QLAARFAEQFPSVRVIALSMHKDPEYVRRAFALGVAAYVLKEAPAHELVTAIRTVAAGGT 126 Query: 108 --------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P + +L+ K+ VL +A + ++I E+L S++T H+ + Sbjct: 127 YLNAELQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLH 186 Query: 154 IMMILNLKRINELVRHQ 170 + L + ELV++ Sbjct: 187 LRRKLRVGGRAELVKYA 203 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 141 bits (356), Expect = 9e-33, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLH--QNAFVIIDTLMNNVFHS 55 ++ + ++ +L K V I E E ++H I+D M + Sbjct: 7 IVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLNGF 66 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDF------------ 98 + +I R P V+I S + + L ++ + + Sbjct: 67 DATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAATAELQLALNAVRKGET 126 Query: 99 -----------VALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 E +L+ + +++ IA +T++I L +S+KT Sbjct: 127 YLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSVKTI 186 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ ++M L L + +VR+ L+ Sbjct: 187 ETHRMHLMARLGLHDVAGVVRYALRTGLI 215 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 141 bits (356), Expect = 9e-33, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 31/205 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 L++ + ++ L + + E + +++D M Sbjct: 10 VLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTDGI 69 Query: 56 NFLTQIERL-KPVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYC--- 107 L ++ L P V+I + F +R L +V + I I + Sbjct: 70 EALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHV 129 Query: 108 -----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 +L+ ++ +VLS IA+ + +I L +S KT H Sbjct: 130 LLQPEVAVALLTQDDQGPSSSRGGALTDREREVLSHIADGRSNREIARALVLSEKTVKTH 189 Query: 151 KHNIMMILNLKRINELVRHQHIDYL 175 NI+M L++ + + Sbjct: 190 VSNILMKLDVADRTQAALWAVRHGI 214 >UniRef50_O07528 Uncharacterized transcriptional regulatory protein yhcZ n=3 Tax=Bacillus RepID=YHCZ_BACSU Length = 214 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 66/206 (32%), Gaps = 32/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 +I + ++ + + + + E + + V++D M + Sbjct: 3 IVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGI 62 Query: 56 NFLTQ-IERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + + I++ ++I+ + + ++ L + + + V Sbjct: 63 QAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTRQVHGGEYK 122 Query: 104 --------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + E L+R++ VL+ IAN + ++I L IS KT Sbjct: 123 LSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKTVKT 182 Query: 150 HKHNIMMILNLKRINELVRHQHIDYL 175 H N++ L + + L Sbjct: 183 HVSNLLAKLEVADRTQAALFAVKYNL 208 >UniRef50_A4VZN8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=52 Tax=Bacilli RepID=A4VZN8_STRS2 Length = 213 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ-----NEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 +++ M +K+ L+ V + EE + L + V++D +M + Sbjct: 6 VMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVVVMDLVMPKMTGV 65 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGS----- 105 + + P I+ I L ++ +T + + +A I Sbjct: 66 EATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARGYMLKTSSADEILAAIRKVALGEY 125 Query: 106 ------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 + P+ L+ ++ ++L+ +A + I ++ ISLKT H N Sbjct: 126 AIETEVEKKVEHHKRHPDLHDDLTAREREILTLLAKGYDNQRIADESFISLKTVKTHVSN 185 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I+ L + + V + LV Sbjct: 186 ILSKLAVSDRTQAVVYAFQHGLV 208 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 26/200 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ-----NAFVIIDTLMNNVFHSN 56 LI + + IL ++ + L Q V++D M + + Sbjct: 5 ILIADDHAIVREGLTMILESSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELNGID 64 Query: 57 FLTQIE-RLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTIT---IIDFVALINGSYC- 107 I RL V VI+ S ++ R + ++ + ++D V + C Sbjct: 65 ATRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLKESAGSGLVDAVRAVIRGECY 124 Query: 108 ------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 SLS ++ +V+ + T+ +I E L +S K+ ++ +M Sbjct: 125 FGEGVDAPQAVAGFKSPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRSRLM 184 Query: 156 MILNLKRINELVRHQHIDYL 175 + L + I LV+ + Sbjct: 185 VKLGVGNIPALVKFALQHGI 204 >UniRef50_Q023R1 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023R1_SOLUE Length = 214 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVV---HIQNEEEID-VMLHQNAFVIIDTLMNNVFHSNF 57 L+ M + +K +L V I+ + + V++D M + + Sbjct: 6 ILLGDDHAMILSGIKGLLEGHYEVIGSEKNGRALIETAVRLKPDLVVLDVSMPILNGIDA 65 Query: 58 LTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALIN--------- 103 +I++ P +IF + +++ L +V ++ + + I Sbjct: 66 AREIKKALPAAKLIFLTMHTNAIYLRKALHAGASGYVLKSGAAEELLTAIEEVCKGYIYV 125 Query: 104 ------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 S +L+ +Q +L +A ++I E IS++T H+ Sbjct: 126 GPDFGQDVIESIRSTGDSQGGLPALTDRQRHILQLLAEGKQNKEIGEIAHISVRTVEFHR 185 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 +M L + EL R + L+ Sbjct: 186 SRLMSRLGAHSVAELTRFAIQEGLI 210 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 82/209 (39%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVML-HQNAFVIIDTLMNNVFHS 55 +I +F +++ILS+ + + + +E +++ L H V++D M + Sbjct: 4 LIIADDHELFLEGVRDILSREDDLDVLALARTGQEALELTLQHHPDVVVMDVTMPKMNGI 63 Query: 56 NFLTQIER-LKPVHVIIFSPFNIKRCLG----KVPVTFVPRTITIIDFVALINGSYC--- 107 +I+ L V ++ S KR + + + + + + I+ Sbjct: 64 EASRRIKSSLGDVKILALSMHADKRLIAEILKAGASGYALKEGSSEELIRAIHIVSSGET 123 Query: 108 --------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 +VP A LS ++ +VL+ +A +T+++ L IS T Sbjct: 124 YLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKNTV 183 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ IM L+ I EL+R + L+ Sbjct: 184 DTHRRRIMEKLDCGNIAELIRFAIREGLI 212 >UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR family n=2 Tax=Sphingobacteriales RepID=C6VTJ6_DYAFD Length = 207 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE------EEIDVMLHQNAFVIIDTLMNNVFHS 55 II + +KN+L + + + H +++D + ++ Sbjct: 3 VFIIDDHPIVLQGLKNLLESREGIRVTGIFDQADSALAALDSHIPEVMLMDINLPDISGV 62 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSYC--- 107 Q+++ P ++ + +R L +V + D VA + + Sbjct: 63 TLCQQVKQAHPEIRVVALSIHNERSVIMSMLQSGASGYVLKNAIGDDIVAALQAAMEGQI 122 Query: 108 ---------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 + P+ L+R++ ++L I TT+ I +L IS T H+ Sbjct: 123 YLCAETQKALNEAPGTEPKEIPRLTRREKEILELIGQGYTTQQIAAELFISTHTVESHRK 182 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 N+ + +VR L+ Sbjct: 183 NLKEKFGVPNTATVVRMAAELGLM 206 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 LI + +K+++S + + E + + + +++D M + Sbjct: 8 ILITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLSMPKMNGL 67 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSY---- 106 + Q+++ +P I+ + + L + ++ + + I Sbjct: 68 ATMRQLKKERPEVKILVITMHASQDYLIPALKEGADGYLLKGDDPQELFMAIRAIMDGKA 127 Query: 107 -------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + SL++++ +V +A T + I + L IS KT Sbjct: 128 YLSSDLSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFISPKTV 187 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N+M L+L E+ + ++ Sbjct: 188 DKHRTNLMKKLDLHSAREVSNFALKNGII 216 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ T+ + ++LSK + E ++ L + +ID M + Sbjct: 4 VMLADDHTILRQGLVSLLSKDADCTVVAEASNGLEAVEKALETRPQVAVIDISMPELNGM 63 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALING------ 104 + +I P +++ + + + ++ + + + + Sbjct: 64 EVVKRIHDKLPECKILVLTMHEEQEYVIHMVRAGASGYLLKDSASEELIDAVKALATGKT 123 Query: 105 -----------SYCSVPE-----AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 + S P+ +L++++ +V + + TT+DI L IS+KT Sbjct: 124 YYSQYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKTAE 183 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ ++ L + ELVR+ L+ Sbjct: 184 NHRGKVLDKLGVSNTAELVRYAAKHNLL 211 >UniRef50_A1SKW0 Two component transcriptional regulator, LuxR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SKW0_NOCSJ Length = 215 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 L++ T+ + IL + + V + + V++D + + Sbjct: 8 VLVVDDHTLHRDGTRRILEQYDDVDVVGDAASGEDALAMVNRLHPRVVLMDIRLPGMNGI 67 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGS----- 105 +I P V+I + + ++ ++ +T + V + Sbjct: 68 EATRRIRERHPDTRVLIVTAYDDEEYVRGAFDVGAAGYLSKTAPGRELVEAVRAVAGGNS 127 Query: 106 ----------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 A +L+ ++ VL +A M + I +L IS +T H I Sbjct: 128 VLQPTLMAALLAKRSSPANTLTDRERAVLRLLAEGMHNKQIASRLGISARTVERHCDRIY 187 Query: 156 MILNLKRINELVRHQHIDYLV 176 L + E V L+ Sbjct: 188 GKLGVTSRTEAVVRAISANLL 208 >UniRef50_D1AAU8 Two component transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAU8_THECD Length = 220 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 34/207 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 LI +F ++ +L V + E E Q V++D M Sbjct: 12 VLITDDHPVFRQGLRGLLE-ALGVEVVGEAESGPQAVQLAAELQPDVVVMDLHMPGGNGI 70 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 I R P + V++ + F + + ++ + + + Sbjct: 71 EATRTITRTSPRIGVLVLTMFRDDDSVFAAMRAGARGYLLKESGAEEIARAVRAVAAGEA 130 Query: 108 -------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 A L+ ++ +VL IA + +I + L +S KT Sbjct: 131 IYGPEIARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKTVR 190 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYL 175 H NI M L++ + + L Sbjct: 191 NHVSNIFMKLHVADRAQAIVLAREAGL 217 >UniRef50_C6CZA5 Two component transcriptional regulator, LuxR family n=4 Tax=Firmicutes RepID=C6CZA5_PAESJ Length = 221 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----------EIDVMLHQNAFVIIDTLMNN 51 +I+ M T ++ L + E E + +++D +M Sbjct: 9 VMIVDDHDMVRTGLRTYLMLEPKFEVVAEAGSGQAAISMLEAGLPSGLPDVILMDLMMPG 68 Query: 52 VFHSNFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALING-- 104 + Q+ P +I+ + F + + V++V +T++ + + ++G Sbjct: 69 MDGIETTRQLIVEYPNLKIIMLTSFLEDDKVYGAIEAGAVSYVLKTVSAEELIYALHGAV 128 Query: 105 ------------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + L+ ++ +VL IA + ++I E+L IS+KT Sbjct: 129 KGMPVMTADVSQALTRGLRQRTAQSGDEELTEREKEVLLLIAEGRSNKEIGEELHISVKT 188 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H N++M L+ +L H V Sbjct: 189 VKTHVSNLLMKCELEDRTQLAVLAHRKGWV 218 >UniRef50_B2KBW2 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBW2_ELUMP Length = 215 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 85/209 (40%), Gaps = 35/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSK-GNVVHIQNEEEIDV------MLHQNAFV-IIDTLMNNVF 53 L+ + +K+IL + G + + E + ++N V ++D M + Sbjct: 4 ILLADDHALVRDGIKSILERKGKNISVVAEMGNGKEMLDYAVKNKNIDVYVVDIAMPILN 63 Query: 54 HSNFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN----- 103 + ++ ++ P VI+ S ++ +++ FV + + + + I Sbjct: 64 GIAAVQKLLKINPDAKVIVLSMYDDRASVEKAFKAGARGFVVKVSSADEIIEAIKEVSAG 123 Query: 104 -----------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 G + L+ K+ Q+L IA ++++I ++ +SL T Sbjct: 124 RFYLCSKVSKFVVQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSSKEIAKEFGLSLNT 183 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYL 175 + H++NIM L++ + ELVR+ + + Sbjct: 184 VHVHRNNIMRKLDIHKQAELVRYAIKEGI 212 >UniRef50_C7MLQ9 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=29 Tax=Actinobacteria (class) RepID=C7MLQ9_CRYCD Length = 261 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 38/213 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 LI+ + K ILS + V + E + + + V++D M Sbjct: 45 VLIVDDQDLVRNGFKLILSSYDHVRVVGEASNGIEAYEQSLALRPQVVLMDIRMPVEDGI 104 Query: 56 NFLTQI---ERLKPVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYC- 107 +I L V++ + F+I L F+ + D V + Sbjct: 105 AATRKIVGDTALAQTRVLVLTTFDIDEYVYDALQAGASGFMLKDAEPDDIVRAVRTVAAG 164 Query: 108 ------------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKIS 143 + V L+ ++ ++L +A M+ E+I + L IS Sbjct: 165 DALIQPSITRRLIETFVSSRPRTSAAAGGLVDLTDREREILRFVARGMSNEEIADDLVIS 224 Query: 144 LKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H IM L+ +LV + LV Sbjct: 225 PATVKTHLARIMGKLDAHDRAQLVVAAYESGLV 257 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ-----NAFVIIDTLMNNVFHSN 56 LI + + +L+ +V + E+ + V++D M + Sbjct: 5 ILIAEDQQLVRQGLVALLAVDDVTIVGEAEDGKGAIEMARTLAPDVVLMDLSMPELDGVE 64 Query: 57 FLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYCS--- 108 +I+++ P V V++ + N +R L + + + + +A IN Sbjct: 65 ATRRIKQVAPQVRVLVLTVANCERRVAEALAAGADGYALKKLGHGELMAAINAVCAGKTY 124 Query: 109 ----------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 SL+ ++ +VL IA +I ++L I++KT H+ Sbjct: 125 LGPGLSEDLVKEYLEGSDMGGGSLTAREREVLQLIARGHKNREIADELGIAIKTVETHRT 184 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 IM L+L EL + L+ Sbjct: 185 KIMQKLDLHNSAELAAYAIRRGLI 208 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 72/210 (34%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-EIDVMLHQ-----NAFVIIDTLMNNVFHS 55 L+ + + + L+ + I E + + + V++D M + Sbjct: 21 VLLADDHPVVRKGLGSCLNNLEHIEIVGEAVDGQETVSKVRELSPEIVLMDLDMPTMSGL 80 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 I R P V V+I S + + + +V + + + V I + Sbjct: 81 EATKIIRREFPLVKVLILSIHTNKDYVLQIIKSGAQGYVLKDAPLTELVRAIESVHGGGA 140 Query: 108 ---------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + L+ ++ +VLS IA + +++ ++ + ++T Sbjct: 141 FFSPDISQIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRT 200 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ +M L++ + L ++ ++ Sbjct: 201 VETHRERVMNKLDIHNVAGLTKYAIAHGII 230 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 63/208 (30%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 LI+ + ++ + + + E + V++D M + Sbjct: 14 LLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMPTMGGV 73 Query: 56 NFLTQIE-RLKPVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + ++ V V++ + ++ + + ++ + D + + + P Sbjct: 74 EAIRRLRVEQPAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAPREDLIRAVRAAAAGQP 133 Query: 111 ----------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 +L+ ++ +VL +A+ T + KL IS T Sbjct: 134 VLAPTVAQRLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLFISEATVK 193 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H + ++ V + L+ Sbjct: 194 THLLHAYAKFGVRDRAAAVAEAYKRGLL 221 >UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=Flavobacteriales RepID=A0M4P6_GRAFK Length = 205 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 26/195 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQ-NAFVIIDTLMNNVFHS 55 +I T +K + +E I++ + +I D M + Sbjct: 4 LVIAEDHTALIDGIKVFFEYEEDIEFVGFANNGQELIELTRRKKPNLIITDIRMPVMDGI 63 Query: 56 NFLTQI-ERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 +I E + +I FS F+ +++ L ++ + ++ + + I + Sbjct: 64 QATKEILEEFPNIKIIAFSMFDQDKAVQQMLEAGASGYILKNSSLKELLYAIRKVHEGEH 123 Query: 109 -------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 P++ L+ +Q ++L I T ++I ++L I T H+ N++ Sbjct: 124 YYDPNITVKQKSVSPKSKAVLTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHRKNMI 183 Query: 156 MILNLKRINELVRHQ 170 L L+ EL+R+ Sbjct: 184 RKLGLQGAGELLRYA 198 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 72/212 (33%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L+ ++ ++ L I E + +I+D M ++ Sbjct: 9 ILLADDHSIVRAGLREALESQPGWTICGEASNGRDAVRMAKELVPDVMILDISMPDLSGV 68 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + +LK ++ + ++ L FV ++ + + +A + P Sbjct: 69 IVARDVRKLKTHTELLIFTMHDSEQLVREVLSAGARGFVLKSASTDNIIAAVASLLNHKP 128 Query: 111 --------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 E A +L+ ++ ++ +A + + I L IS+ Sbjct: 129 YFCPGITDTVLRGYLSPGGHALGELIEGAETLTTRELLIVQLLAESRSNKVIASMLDISV 188 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 KT H+ NIM L + ++VR+ + L+ Sbjct: 189 KTVESHRGNIMRKLGAHSLADIVRYAIRNKLI 220 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 65/201 (32%), Gaps = 27/201 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L+I + +K +L + + + + Q V++D M + Sbjct: 9 VLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLDIARQIQPQVVLMDINMPKLSGI 68 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + + P ++ + R + +V + ++ + VA I Sbjct: 69 DAIELFRNEFPEIRVVMLSMHDSREYISSSVMHGAAGYVLKDVSTDEIVAAIETVADGGT 128 Query: 109 --------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 E + L+ ++H +L I + +I E L IS T H+ N+ Sbjct: 129 YFSSGVFDALMGERAEEGSDPLTPREHDILGLIVAGRSNREIAEVLGISSATAETHRKNL 188 Query: 155 MMILNLKRINELVRHQHIDYL 175 L + L+R+ + Sbjct: 189 KKKLGIATTAGLIRYALDHGI 209 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 65/211 (30%), Gaps = 39/211 (18%) Query: 4 IITRDTMFFTAMKNILSKGNVVHIQN-----EEEIDVMLHQ-NAFVIIDTLMNNVFHSNF 57 + + + +L + + +E + ++ + V++D M Sbjct: 3 VADDQAIVREGIVMLLGLLPGIEVVGAAKDGDEAVALVAEKAPDVVLMDLRMPRCDGVEA 62 Query: 58 LTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALINGSYC----- 107 +I + P V++ + F L ++ + + V I+ Sbjct: 63 TRRIRKEHPRTQVVVLTTFADDDSLFTALQAGARGYLTKDARGEEIVQAIDAVMSGEAGL 122 Query: 108 ------------------SVP-----EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 P E L+ ++ +VL IA ++ +I L +S Sbjct: 123 SPKVQRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIAEGLSNREIARALHVSA 182 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 T H +N+ + + VR+ + L Sbjct: 183 ATVKTHINNLFAKTGARDRTQAVRYAYGRGL 213 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 74/210 (35%), Gaps = 36/210 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 L+ + ++ +L + + E E +++ Q ++D M Sbjct: 8 VLLADDHPIVRVGLRALLEAEPDIAVVGEAGTADEAVELARTLQPDVAVLDISMPG-NGL 66 Query: 56 NFLTQIERLK-PVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALI-------- 102 L +I L P +I + +R L +V ++ D V I Sbjct: 67 EALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRKSSLHTDLVEAIRLVARGEV 126 Query: 103 ----------------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + V + A LS ++ +VL A T ++I ++L +S KT Sbjct: 127 FIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSPKT 186 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 ++H +M L R +ELVR L+ Sbjct: 187 VETYRHRVMQKLGFSRRSELVRFALRIGLL 216 >UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYF0_9SPHI Length = 218 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQN-AFVIIDTLMNNVFHS 55 I +F + IL + + + +E ID + Q +++D M + Sbjct: 5 VAIADDHVLFRKGLVTILELDDNIEVVYGADNGKELIDKVDAQPPDVILMDLKMPVMDGM 64 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 I+ P V++ S ++ I CL ++ + + V I Sbjct: 65 EATKIIKAKYPEVKVLVLSMYDEEKFIIHCLELGANGYLLKNTDPDELVHAIGTVMAKDF 124 Query: 108 -----------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 E ++ L++++ +VL I ++TT ++ EKL IS Sbjct: 125 YFNNHISTVMLKGLNQKKRAKGKPQFENSIELTKREQEVLELICKELTTPEMAEKLFISN 184 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 +T H+ N++ K LV + LV Sbjct: 185 RTVEGHRKNLLEKTGAKNTAGLVVFALKNELV 216 >UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q1ASU8_RUBXD Length = 207 Score = 139 bits (351), Expect = 4e-32, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-EIDVMLH-----QNAFVIIDTLMNNVFHS 55 L+ M + +L + E + + +L + V++D M Sbjct: 6 ILVADDHPMLREGLSAVLGTRPGFEVVGEAGDGEEVLRLASGLRPDVVLLDLEMPGTGGV 65 Query: 56 NFLTQIERLK-PVHVIIFSPFNIKRCLGK---VPVTFVPRTITIIDFVALINGSYCSVP- 110 L ++ L P V++F+ ++ +R L + + + + + + Sbjct: 66 EVLRRLRGLDDPPKVVVFTAYDDERLLEALREGARGCLLKGASRTEIFDAVRTVHAGGSV 125 Query: 111 --------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 + L+ ++ +VL +A +T ++ L IS +T H +++ Sbjct: 126 IPPEITARVLKEMRGESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLA 185 Query: 157 ILNLKRINELVRHQHIDYLV 176 L + + V L+ Sbjct: 186 KLRAENRTQAVAIARERGLL 205 >UniRef50_A5G586 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=A5G586_GEOUR Length = 226 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 78/208 (37%), Gaps = 34/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQ-NAFVIIDTLMNNVFHS 55 L++ + +K IL+ + + + E E I V++D M + Sbjct: 15 VLLVDDHKIMRKGLKAILALEHTIEVVAEAANGREAIRKADELLPDVVVMDLTMPEMNGI 74 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKRCL----GKVPVTFVPRTITIIDFVALINGSYCSVP 110 + QI P ++ S + C+ ++ + + + V I+ P Sbjct: 75 EAIRQIVAAHPDVRTLVLSMVLDRACVMETFKAGATGYLLKDCAVEELVGAIHTVASGEP 134 Query: 111 -----------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 ++ V LS+++ +VL IAN +T++I +S+KT Sbjct: 135 YLCPQITSLVIRDYTKGADANSSDSCVQLSKREREVLQLIANGNSTKEIAFTFGVSIKTV 194 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYL 175 + ++M LNL + +L ++ + L Sbjct: 195 AVQRMSVMKKLNLFNVADLTKYAVREGL 222 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 62/210 (29%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMN-NVFH 54 I + I++ + + E + +++D M Sbjct: 4 VAIADDHAVVRQGFAFIINSQCDMRVVGEAADGKEAYDLVARVEPHVLLLDISMPPGENG 63 Query: 55 SNFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC-- 107 +I P +II + F + L +V + + + I Sbjct: 64 LIACERISCDFPSTRIIILTMFEETDYLFYTLRGGAAGYVLKNSSTEVLLGAIRKVATGE 123 Query: 108 ---------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + LS ++ ++ S +A T ++ +KL IS+KT Sbjct: 124 TYIEPNMAQALSGKLHGQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISVKT 183 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ I L + ELV +L+ Sbjct: 184 VETHRSKIYAKLGVNSRAELVHLALKYHLL 213 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 139 bits (350), Expect = 5e-32, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 26/200 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ------NEEEIDVMLHQNAFVIIDTLMNNVFHS 55 L+ + +K L + + +E + H+ V++D M + Sbjct: 7 VLVADDHPIVRQGLKTFLDIQPDLSVVAEARDGDEALALIAAHEPDVVLLDLNMPGSDGA 66 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 LT++ VI+ + + + F+ + I I Sbjct: 67 KVLTRLAASDHRAKVIVLTSVTEAVRVTEAVAAGAAGFLYKDIDPDSLAQAIRSVADGQV 126 Query: 107 -----------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 P +L+ ++ +VL+ +A + +I ++L ++ KT H ++ Sbjct: 127 IFAREAVTAMTAPAPGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLF 186 Query: 156 MILNLKRINELVRHQHIDYL 175 L + + + + Sbjct: 187 RKLGVADRTQAALYAVTHGM 206 >UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexaceae RepID=A9WKI8_CHLAA Length = 209 Score = 138 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNN-VFH 54 ++ ++ + L+ + + E Q +++D LM + Sbjct: 6 VALVDDHSIVRRGLSAYLAAQPDIVVVGEAANGESALQMASTWQADVIVMDVLMPGGIDG 65 Query: 55 SNFLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYC-- 107 Q++RL P H+II S + L +T++ + + I G+ Sbjct: 66 IETTRQLKRLIPHTHIIILSGYADDARVIGALRAGAITYIEKESQPEQLLEAIRGAMAGK 125 Query: 108 --------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 +AA +L+ ++ +VL +A +T +I +L +S +T H + Sbjct: 126 AVLAPALMQRILEAQTSKAADTLTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVAS 185 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I+ L L + + LV Sbjct: 186 ILRKLGLAHRTQAAIYALRHGLV 208 >UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIR2_THEYD Length = 213 Score = 138 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHS 55 LI+ T+F +K IL + E E ID++ ++ V +D M+++ Sbjct: 7 VLIVDDHTLFRKGLKEILLDTPYIKECKEAKSGYEAIDILSKESFDIVFLDIAMSDINGI 66 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALI-----NGS 105 L +I+ L P I+ + R L ++ ++ + + + G Sbjct: 67 ETLKKIKILYPETKILMLSMYPEEQYAIRSLKCGASGYLTKSADPEELLKAVDKIIKGGK 126 Query: 106 YCSVP---------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 Y LS ++ QV IA + +I ++L IS+KT + Sbjct: 127 YLPHTFSEKLLHYIDKSEDIPPHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVSTY 186 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + I+ L L+ E++ + L+ Sbjct: 187 RARILEKLGLENNAEIINYAIKHGLI 212 >UniRef50_B2J2N1 Two component transcriptional regulator, LuxR family n=12 Tax=Cyanobacteria RepID=B2J2N1_NOSP7 Length = 232 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 70/206 (33%), Gaps = 37/206 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 LI+ ++ +K +L + + + + E + Q V++D M + Sbjct: 11 LLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELVAELQPDVVLMDIRMPEMDGR 70 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYC--- 107 I + P + V++ S F+ + ++ + + + I + Sbjct: 71 TATKLIMQSFPNIKVLVLSTFDDDSYLTGAMRAGAKGYLLKDMPSSELADAIRFGHSGYT 130 Query: 108 -----------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 S ++ ++ +VL I T +I ++L I+ Sbjct: 131 QFGPGLFDKLLVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNREIAQQLYITE 190 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQ 170 T H +I+ LNLK ++L + Sbjct: 191 GTVKTHVTSILSRLNLKNRSQLAIYA 216 >UniRef50_C6Y2F0 Response regulator receiver n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y2F0_PEDHD Length = 206 Score = 138 bits (348), Expect = 8e-32, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 ++ M ++++L + + LH+ +++D + + Sbjct: 7 IFVVDDHYMVIEGIRSLLQNEKTLDWMGHATNAASCLSFLKLHEPDVILMDVNLPDKSGI 66 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALING------ 104 + ++++L P V V+ S FN IK + +V + T + + IN Sbjct: 67 DLCKEVKQLYPSVAVLGLSTFNQQAIIKNMIDNGASGYVLKNATKEELLEAINAVSKGKV 126 Query: 105 -------SYCSVPEAAVSL-SRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 S +P L +R++ +VL IA +T +I EKL IS+ T H+ +++ Sbjct: 127 YYSQEAFSSLRIPAPDQLLITRREKEVLLLIAEGLTNAEIAEKLFISIPTVNTHRKSLIE 186 Query: 157 ILNLKRINELVRHQHIDYLV 176 N+K L+ L+ Sbjct: 187 KFNVKNTAMLIGKAIKLGLI 206 >UniRef50_P0C0Z1 Response regulator protein vraR n=123 Tax=Firmicutes RepID=VRAR_STAA1 Length = 209 Score = 138 bits (348), Expect = 8e-32, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 76/204 (37%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 L + M + + LS + + + E E I + +++D LM ++ Sbjct: 5 VLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 56 NFLTQIER-LKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALING------ 104 TQI++ L + V++ + F + R L +++ +T + D + Sbjct: 65 EATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGES 124 Query: 105 ------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 E L+ ++ ++L IA + ++I I++KT H Sbjct: 125 VFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVS 184 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 NI+ L ++ + V + L+ Sbjct: 185 NILSKLEVQDRTQAVIYAFQHNLI 208 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 138 bits (348), Expect = 8e-32, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 39/213 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE--EEIDVML----HQNAFVIIDTLMN-NVFH 54 +++ + ++ +L + + + E V+ + V++D + Sbjct: 5 VMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVVMDLQLGAGRNG 64 Query: 55 SNFLTQIERLKPV-HVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALINGS---- 105 ++ KP V+I S ++ + R L +V + I + I Sbjct: 65 VEATRELVEKKPEIKVVILSMYDDEELVFRALESGARGYVLKRAGIEELTTAIRLVARGE 124 Query: 106 ----------------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKIS 143 S PE L+ ++ +VL A +T +I +L IS Sbjct: 125 AYLDPQIARRVIEGLQERLPFTRASRPEGPE-LTERELEVLRLAAEGLTNAEIARRLVIS 183 Query: 144 LKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 +KT H+ NIM L L +LV++ + ++ Sbjct: 184 VKTVQAHRANIMQKLGLHDRVDLVKYAIKNGIL 216 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 138 bits (348), Expect = 9e-32, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 28/202 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-IDVMLHQ-----NAFVIIDTLMNNVFHS 55 I+ +F + LS + I + L + V++D M + Sbjct: 3 IFIVDDHPIFREGLIARLSMDDDFVIVGQAANGKEALEKMPNLMPDIVLMDISMPEMNGM 62 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSY---- 106 + + P I+ + + L + + + I+ + + + Sbjct: 63 DAAEIFKDKFPEIKILILSMHDDKEYVLSVLNRGVRGYALKDISAAEMFYALRVIHNGGI 122 Query: 107 -------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P+ L+ ++ VL +A+ + +++ +L IS++T H+ N Sbjct: 123 YYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETHRRN 182 Query: 154 IMMILNLKRINELVRHQHIDYL 175 I L +K LVR+ L Sbjct: 183 IKDKLAIKTSAGLVRYAIDHGL 204 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 25/198 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 LI MF + N+L+ +HI E ++++ + ++D M + Sbjct: 4 VLIADDHVMFRQGLINLLTTAEDIHIAAECGDGATALELIRSLEPDIAVLDITMPKLDGI 63 Query: 56 NFLTQIERLK-PVHVIIFSPFNI----KRCLGKVPVTFVPRTITIIDFV----------- 99 + + L II + + R + F+ + + + Sbjct: 64 SITRAMGNLGLATRAIILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSALRTVAAGGT 123 Query: 100 ---ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 I + L+ ++ ++L IA+ T I + L IS+KT H+ N+M Sbjct: 124 AISRAIQHAAIEPEPPVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRTNLMG 183 Query: 157 ILNLKRINELVRHQHIDY 174 LNL ELVR+ + Sbjct: 184 KLNLHSTAELVRYSLLTG 201 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 42/217 (19%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 LI+ +F + ++ L + I E + +++D + + Sbjct: 6 ILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPGMNGL 65 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSY---- 106 ++R +P +I + + + + I + +I Sbjct: 66 EVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTKDIEPEQLIDVITRVARGEY 125 Query: 107 ---------------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEK 139 + L+ ++ ++L C+A + ++I + Sbjct: 126 LINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIAQA 185 Query: 140 LKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 L IS +T H +I+ L + + V + + Sbjct: 186 LNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWI 222 >UniRef50_A0KNC9 Transcriptional regulatory protein FixJ n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KNC9_AERHH Length = 203 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 78/192 (40%), Gaps = 20/192 (10%) Query: 2 FLIITRDTMFFTAMKNILS---KGNVVHIQNEEEI--DVMLHQNAFVIIDTLMNNVFHSN 56 ++ D +++ +L + + + E +V LHQ A +I+D M + Sbjct: 9 LYLVDDDEAVLDSLRFMLESCDERQLFSFADGERFLAEVDLHQPACLILDCRMPGLSGPE 68 Query: 57 FLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSYCSVPE 111 +++ + I+F + + L V F+ + + + +A I + + Sbjct: 69 VQQRLKAAQSPIAILFLTGHGEVPLAVESLKLGAVDFLQKPVQLAPLLAAIERAEQATLS 128 Query: 112 A---------AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 A L+ ++HQ+L IA + I + L IS++T + ++M L + Sbjct: 129 AATRFAQLAAYQRLTPREHQLLQLIARGHKNQQIAQDLCISVRTVEVCRASLMKRLEVDS 188 Query: 163 INELV-RHQHID 173 + EL+ + ++ Sbjct: 189 LAELMLLYANVH 200 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 63/208 (30%), Gaps = 34/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 LI ++ ++ IL + + E +Q +I+D M + Sbjct: 9 ILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEMTRRYQPQVIIMDINMPGLNGI 68 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 I + P I+ + I L +V + I+ + V + Sbjct: 69 EATKVIRQEWPQIAILALTIHDDEEYIIELLRSGVSGYVLKDISAEELVQAVYQVARGAR 128 Query: 110 ----------------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 ++ L+ ++ ++L ++ + +I +L IS KT Sbjct: 129 VIHPGVAQKVIGCIQKQKPFTPAPVSIPLTAREREILIHVSLGKSNREIARELFISEKTV 188 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYL 175 H +I + + + + L Sbjct: 189 KNHLTHIFHKIGVSDRTQAALYALKHGL 216 >UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM25_SORC5 Length = 233 Score = 137 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE--EIDVMLH----QNAFVIIDTLMNNVFHS 55 +I + LS + + + D + + V++D + + Sbjct: 24 IYLIDDHPVVREGFARALSDEPDMVVVGQAGTAADALRETASCKPDVVLVDLNIPDRDGI 83 Query: 56 NFLTQIE-RLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDF------------ 98 L + +L +++ S ++ + L ++ +T + + Sbjct: 84 ELLGALRAQLPQAKLLVLSGYDDEFRVAEALRAGAQGYLVKTSKLEEVIEGIRRIATGGA 143 Query: 99 ----------VALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 V + +L+ ++ QVL +A ++T + +L IS KT Sbjct: 144 PLSSSIAGAVVRAMRKPASEGSGGLDALTPRERQVLRLLAAGVSTRETAARLTISPKTVE 203 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ I L K EL R L+ Sbjct: 204 THRVRIYAKLGCKSAVELTRIAVRTGLI 231 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 79/211 (37%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 +++ +F + +K+IL H+ E I++ +I+D M + Sbjct: 5 IMLVDDHPVFRSGLKHILCTEADYHVIAEADDGESAIEMAAEANPDIIIMDISMPGLDGI 64 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALI----NGSY 106 +I+R P I+ +K L +V + + V + NG + Sbjct: 65 EVTREIKRKIPDIRILMLTMYADEAFLKESLDAGASGYVLKRAVDTELVHAVKLVMNGEH 124 Query: 107 ---------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 AV LS+++ +VL IA T ++I +L IS+K Sbjct: 125 YIYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYTQKEISTELFISIK 184 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T +K +M + K+ + LVR+ ++ Sbjct: 185 TVDTYKKRVMEKIGSKKKSALVRYALKHNII 215 >UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfobacteraceae RepID=B8FFJ9_DESAA Length = 212 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 76/207 (36%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVML-HQNAFVIIDTLMNNVFHS 55 L+ + ++ I+ + + +E ID+ L H ++D M + Sbjct: 4 VLLADDHVIVRAGLRRIIEDSEDIKVIVEASNGKEAIDLTLEHCPDVAVVDISMPGIDGL 63 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRT------------------ 92 ++++ P ++ + + R + + ++ + Sbjct: 64 EVVSRLHAELPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSAPEQLVTAIRKLHSGSR 123 Query: 93 ---ITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + +AL + SLS+++ QVL +A+ T +I + IS+KT Sbjct: 124 FLTEEAAELLALRVSRWSKGGSLLDSLSKRELQVLRHLASGHTNREIADSYHISVKTVDT 183 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 ++ ++ LNL+ ++ R + L+ Sbjct: 184 YRARLLKKLNLRNNADISRFAIQNNLI 210 >UniRef50_C6DD36 Two component transcriptional regulator, LuxR family n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DD36_PECCP Length = 218 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 79/203 (38%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV-----MLHQN-AFVIIDTLMNNVFHS 55 ++ + + +L+ N + + + +L Q +ID M + Sbjct: 13 VALVDDHIVVRSGFAQLLALENDIQVVGQYASAAQAWPHLLKQPIDVAVIDIAMPDESGL 72 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + LT++ + +P II S ++ ++ L ++ + + V + Sbjct: 73 SLLTRLRQQRPQFRAIILSIYDTTAFVQSALDAGAGGYLTKRCGPEELVQAVRVVSSGGI 132 Query: 104 ----------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P+ ++L+ ++ ++ S + N ++ + I E+L++S KT + H+ N Sbjct: 133 YLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIAEQLELSHKTVHVHRAN 192 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I+ L + ELV L+ Sbjct: 193 ILSKLQCESTVELVHFALQHQLL 215 >UniRef50_A8MF72 Two component transcriptional regulator, LuxR family n=14 Tax=Clostridia RepID=A8MF72_ALKOO Length = 224 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 35/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQ-NAFVIIDTLMNNVFHS 55 LI + +K I+ + + EE + V++D M Sbjct: 13 VLIADDHALVRQGLKQIIELEPDIKVIGLAADGEEAVLKTQQLSPDVVLLDISMPKQNGI 72 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSY---- 106 L +++ + II F+ R + +V + + I Y Sbjct: 73 QTLRRLKDMDSTIKIIMLTFHEDREYLFETINLGANGYVLKDAESESLIKAIRDVYQGLN 132 Query: 107 --------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 L+R++++VL+ +A + ++I + L IS KT Sbjct: 133 YIYPTLATELVKEFNRREVKSQKRNNEDELTRREYEVLTLLAEGINNKEIGDCLFISEKT 192 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYL 175 H NI +N+ + + + + Sbjct: 193 VKNHVSNIFKKINVNDRTQAAIYAYKHNI 221 >UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphylococcaceae RepID=B9E7V9_MACCJ Length = 210 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI----QNEEEIDVMLHQ---NAFVIIDTLMNNVFH 54 +++ + MK +LS ++ N E+ L + +I+D +M + Sbjct: 6 IILVDDHHIVRQGMKFLLSTEASFNVIADFNNGRELLEHLDETQLPDLIIMDLVMPELNG 65 Query: 55 SNFLTQIERLKPV-HVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFV----ALINGS 105 +I+ P V++ S F + + + + + + G Sbjct: 66 IEATRRIKAKYPDVKVLVLSSFIDEEHVLGVMDAGADGYEMKDSEPKALINTIKQIAAGE 125 Query: 106 YCSVPEA-------------AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 P+ LS+++ +VL ++ +T ++I EKL +S KT H Sbjct: 126 QIFHPDVMKVRKSGMNLAHLRNPLSKRELEVLKAMSEGLTNKEIAEKLFVSEKTVKTHVS 185 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 +I L + + + L+ Sbjct: 186 HIFAKLEVGDRTQASMYGVKYKLI 209 >UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR family n=18 Tax=cellular organisms RepID=B4SLZ0_STRM5 Length = 217 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 71/200 (35%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 L++ + + +L + + E Q V++D M + Sbjct: 10 VLVVDDHPLLRDGLAALLGAQPDLRLLGEAADGEEAIACYQRLQPDVVLMDLQMPRLDGV 69 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALIN----GSY 106 + +I L P +I+ + + R L ++ + + + V I G Sbjct: 70 EAIVRIRALDPRARIIVLTTYRGDVRAVRALQAGASAYLLKDMLRHELVDTIRMVAGGRR 129 Query: 107 CSVPEAAVS----------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 +P A + LS ++ +VL +A ++ + I E+++IS +T H ++M Sbjct: 130 APIPPAVAASIAAHVVEDRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSLMD 189 Query: 157 ILNLKRINELVRHQHIDYLV 176 L + V ++ Sbjct: 190 KLGVGDRTHAVTQALRRGII 209 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 68/210 (32%), Gaps = 36/210 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEID-VMLHQNAFVIIDTLMNNVFHS 55 L++ +F + +L +++ E E I+ Q ++D M Sbjct: 12 VLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTLQPDVTLLDIHMPVCNGL 71 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 ++ P I+ + + + +V ++++ + + Y P Sbjct: 72 ETARKMREANPNTKILMLTVSETEEMLFEAVKSGASGYVLKSVSPERLIECVRQVYEGEP 131 Query: 111 -------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 E+ L+ ++ +VL ++ + ++I L IS Sbjct: 132 VVPSSLAMKMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIARALFISEN 191 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYL 175 T H +I+ L+L + + + + Sbjct: 192 TVRNHVRHILDKLHLSNRAQAAAYAVRNGI 221 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ + ++ I+ I+ E E I + Q V++D M Sbjct: 6 IILADDQLLIRAGIRAIVETLPGFQIEAECTDGYEAISAIQRLQPDVVLLDIAMPGPSGI 65 Query: 56 NFLTQIERLKP-VHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALI----NGSY 106 I + P +++ S P I++ L ++ + + + + + +G Sbjct: 66 EVARTIRQFDPNTKILVLSSVDRPEIIEQALAAGVNGYLLKDFVLAELLQALEMVLHGER 125 Query: 107 CSVPE---------------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 P+ + L+ +Q ++L +A+ TT++I L IS KT H+ Sbjct: 126 FLSPKIREMSRFSDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHR 185 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 +M + + + L R +V Sbjct: 186 SRLMERIGVHDVTGLTRFALQTGVV 210 >UniRef50_C6WIC9 Two component transcriptional regulator, LuxR family n=31 Tax=Actinobacteria (class) RepID=C6WIC9_ACTMD Length = 302 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 +I + + + ++ + + E V++D M NV Sbjct: 73 VVIADDQALLRGSFEVLVGSAPDLRVLGTAEDGERAVAVAARVRPDVVLMDVRMPNVDGI 132 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 +I + V V+I + F + L F+ + D +A I Sbjct: 133 EATARICAAQAGVRVLILTTFDLDEYVYAALRAGASGFLLKDTPPADLLAAIRVVASGEA 192 Query: 108 -----------------SVPEAAVSL---SRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 +L + ++ +VL +A ++ +I E L +S T Sbjct: 193 LLSPSVTRRLITEFAARPAARPLPALDAVTAREREVLRLVAEGLSNTEITEALHVSRGTL 252 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H ++ L + +LV + LV Sbjct: 253 KTHVGRLLHKLGARDRAQLVIAAYESGLV 281 >UniRef50_B1Y743 Two component transcriptional regulator, LuxR family n=6 Tax=Bacteria RepID=B1Y743_LEPCP Length = 211 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID-VMLHQN-----AFVIIDTLMNNVFHS 55 I + +K +L + E ++ Q ++D M Sbjct: 5 VFIADDHPVVRQGLKQLLGAEADFSVAGEASSGHEVIDQCGRFAWDVAVLDYRMPGKGGI 64 Query: 56 NFLTQIERLKPVH-VIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 + + ++ + P V++ S R L ++ + D V I Sbjct: 65 DLIKELRQRFPDRPVLVLSVCPEDQYAMRVLRAGAAGYLTKESAPEDLVNAIRKVARGGR 124 Query: 110 -------------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 LS +++Q++ +A+ +I ++L +S T + Sbjct: 125 FVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKKVGEIAQQLFLSPNTISTY 184 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + I+ L+LK EL+R+ LV Sbjct: 185 RKRILEKLDLKSNAELMRYAIGHQLV 210 >UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR family n=46 Tax=Proteobacteria RepID=A3D3Y4_SHEB5 Length = 214 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 30/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ ++ F + L+ +++ E + +++ V +D + + Sbjct: 11 ILVVDDHSLIFDGLLGCLAPYPELNLIGSVEDGLAVYEKCLKLRPDLVFMDLKLPGMGGF 70 Query: 56 NFLTQIERLKPVHVIIFSPFNI-----KRCLGKVPVTFVPRTITIIDFVALIN----GSY 106 + + Q+ + P +II + + L +V + +A I G Sbjct: 71 DVIRQLRQRWPEMMIIMLTATVEEKSAREALDVGANGYVLKYSPKSTLLAAIKCVCKGKN 130 Query: 107 CSVPEAAVS---------------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 P L+ ++ QVL I DI E L I LKT H+ Sbjct: 131 FIDPSLDERQIAALSGVVDGDMPLLTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHR 190 Query: 152 HNIMMILNLKRINELVRHQHIDYL 175 N+M LN + EL+ L Sbjct: 191 MNLMRKLNAHNVAELMHWVQRLGL 214 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ +F + +L + + E V V++D M Sbjct: 1 MLVVDDQELFRRGLTMLLGTEAGIEVVGEAGDGVEGTNLAATAAPDVVLLDIRMPKRSGI 60 Query: 56 NFLTQIERLKPVHVIIFSP-----FNIKRCLGKVPVTFVPRTITIIDFVALING------ 104 I+ P II ++ + ++ + +I + + Sbjct: 61 EACLAIKEAVPSAKIIMLTVSDEEADLYEAVKSGASGYLLKDSSIEEVAQAVRVVADGQS 120 Query: 105 --------------SYCSVPEAAV----SLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 S PE L+ ++ +VL +A M +I ++L IS T Sbjct: 121 LISPSMAVKLIDEFKQMSRPERDHVPGLRLTERELEVLRLVAKGMNNREIAKELFISENT 180 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H NI+ L L E V + + L+ Sbjct: 181 VKNHVRNILEKLQLHSRMEAVMYAVKEKLL 210 >UniRef50_D1BGN7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=4 Tax=Actinomycetales RepID=D1BGN7_SANKS Length = 258 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 68/214 (31%), Gaps = 39/214 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 L++ +F + + I+ + + + + V V++D M + Sbjct: 36 VLLVDDQELFRSGIAVIVDAQDGLEVVGQAADGSEAVRMVDDLSPDVVLMDVRMPELDGV 95 Query: 56 NFLTQI-------ERLKPVHVIIFSPFNIKRCLGK----VPVTFVPRTITIIDFVALING 104 QI R PV VI+ + F++ F+ + T I Sbjct: 96 EATRQIFAPARAASRAGPVRVIVLTTFDLDDRAAAAIRYGASGFLLKDATPAMLRDAIRT 155 Query: 105 SYC----------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 + P L+ K+ +VL+ +A + +I + + Sbjct: 156 VHAGNAVLAPDDLSTLLDGRFRARRPSPPGLEDLTPKEREVLAAVAAGLNNAEIARRAFV 215 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 S T H ++ L L+ ++V H LV Sbjct: 216 SESTVKTHVGAVLRKLGLRDRVQVVVLAHEHGLV 249 >UniRef50_UPI0001B502C9 two component LuxR family transcriptional regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B502C9 Length = 229 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 LI + ++ IL N + + E E + + V++D LM + Sbjct: 5 VLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDGV 64 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKRCL----GKVPVTFVPRTITIIDFVALING------ 104 + +I + P V+ + + + F+ + D + Sbjct: 65 SATAEIRQDIPEVEVVALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNAVKAAAAGQI 124 Query: 105 -----------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P L+ ++ +VL+ +A ++I L+I +T + + Sbjct: 125 HVSPAAISRLMGQVREPSGPEQLTERETEVLTMLARGKANKEIARDLRIGQQTVKTYVSH 184 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I+ L + + + LV Sbjct: 185 ILTKLGVHSRTQAAVYAVQSGLV 207 >UniRef50_B1ZU68 Two component transcriptional regulator, LuxR family n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZU68_OPITP Length = 238 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 78/205 (38%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 +++ T + ++ H+ E E LH+ + V++D +++ Sbjct: 11 VMMVEDHTAIRQMLAAFVAAMPGFHVVAEAESVEQALAMAELHRPSVVVLDWMLSGRSGL 70 Query: 56 NFLTQIERLKPVHVIIFSP----FNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP- 110 F+ I P V++FS ++ L ++ +T +F + Sbjct: 71 GFVRDIRIDPPPRVLVFSAITSALAVREALAAGAKGYLEKTAPFDEFKMALRSVAAGREY 130 Query: 111 -------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 A +L+ ++ +VL +A + +++I ++L +S +T H+ Sbjct: 131 LGASAKRLLQQEAHAAMRLGAGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHR 190 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 NI+ L+ + +LV + L+ Sbjct: 191 ANILKRTGLRSVAQLVLYAARLGLI 215 >UniRef50_C0A2L6 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2L6_9BACT Length = 240 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE----EEIDVMLHQ--NAFVIIDTLMNNVFHS 55 I + ++ +L + +E ++H+ ++ D M Sbjct: 23 VAIADDHHVVRQGIEALLRMCPDMEYVGGASTVDEARQLVHRTRPDVLVSDLSMPGGSGV 82 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 FL + R P I+ + ++ FV + V++I + Sbjct: 83 GFLRNLRRECPDTRIVVLTMHATALAMQDAFDSGAHAFVAKDDAFDTLVSIIRRVHSGEE 142 Query: 110 -------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 + L+ ++ +VL I ++T++I +L +S KT ++ +M Sbjct: 143 FLFSRTMKEVTGGSQETPRLAPREREVLQGITKGLSTKEIGAQLFLSPKTVEVYRGRLMK 202 Query: 157 ILNLKRINELVRHQHIDYLV 176 N+ + EL+ H +V Sbjct: 203 KFNVTKGTELIHHAVASGIV 222 >UniRef50_A5FNZ8 Two component transcriptional regulator, LuxR family n=4 Tax=Bacteroidetes RepID=A5FNZ8_FLAJ1 Length = 221 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 77/210 (36%), Gaps = 36/210 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH---QNAFVIIDTLMNNVF 53 ++ + +F + +L + + + I E+ ++ +L + +I+D M + Sbjct: 7 IALVDDEVLFRKGIAFLLQREDNIEIVFEASNGEDLVNKLLENEIKPDIIIMDLKMPVLN 66 Query: 54 HSNFLTQIERLKPV-HVIIFSPFNIKRCLGK----VPVTFVPRTITIIDFVALIN----- 103 I + P +I + ++ K + V ++ + T D + IN Sbjct: 67 GVEATKIIRKSFPEIKIIALTSYDSKSFIANMIQVGAVAYLIKNTTPKDLIKTINEVNKK 126 Query: 104 ------------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 LS ++ ++L I Q TT +I E L +S + Sbjct: 127 GFYYNESVLKTIQETIVSSKNSKGNLETSFLSPREIEILQLICQQKTTSEIAEHLFLSPR 186 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYL 175 T H++N+++ + I LV + + + Sbjct: 187 TVEGHRNNLLLKTESRNIAGLVVYAIQNEI 216 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 +++ + + ++ +L + + V + E + H +++D M + Sbjct: 7 IMLVDDHEVVRSGLRRLLEQNDGVEVIAEADSGEQAYQFYGEHMPDVIVMDMSMPGMGGL 66 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 L +I P VIIFS + LG +V ++ D V + Sbjct: 67 EALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGAADDLVQAVREVAQGKG 126 Query: 104 ------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 + + LS ++ +V +A E+I LKIS KT ++ Sbjct: 127 YLSPGIAQQIALQTLSGSDDPTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVANYQ 186 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 + L + ELVR ++ Sbjct: 187 TLLKQKLGITSPIELVRLAIKHGVI 211 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 34/202 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 L++ M ++ I+ + + E E V + V+ D + + Sbjct: 15 ILLVDDHPMMREGLRQIIGNEIDLAVCGEAENAFQALELVKSEKPDLVLADITLPDKNGL 74 Query: 56 NFLTQIERLKPVHVIIFSPFNIKRCLGK----------------------------VPVT 87 L ++ P ++ + + + Sbjct: 75 ELLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRGYIMKHEGGKKIMQAIRHVLSGQI 134 Query: 88 FVPRTITIIDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 FV ++ + +L+ ++ +V I ++T++I + +S KT Sbjct: 135 FVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVSAKTV 194 Query: 148 YCHKHNIMMILNLKRINELVRH 169 H+ NI L LK EL+R+ Sbjct: 195 EVHRMNIKTKLGLKTAAELIRY 216 >UniRef50_A9E1A9 Phosphoglyceromutase n=1 Tax=Kordia algicida OT-1 RepID=A9E1A9_9FLAO Length = 225 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 75/211 (35%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ--------NAFVIIDTLMNNVF 53 ++ D + + +K+ L + I + ML + +++D M + Sbjct: 7 IALVDDDALIVSLLKDFLGNQEKMEICYTADSGEMLMEKLATETALPDIMVLDLNMKGIN 66 Query: 54 HSNFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALIN----- 103 +++ P +I + KR L F+P+ I+ + V +I Sbjct: 67 GVEVTEFLKKNYPSIKVILMTSHYKRSFMGFMLKTGVSAFIPKGISPVQLVEIIKEIYDK 126 Query: 104 ------------GSYCSVPEAAVSL------SRKQHQVLSCIANQMTTEDILEKLKISLK 145 S +L + ++ +VL I Q T ++I E+L I+ + Sbjct: 127 GFYFMEDQLGILREQISHKSPKPTLIEKNVLTEREIEVLKLICFQKTAKEIGEQLFITPR 186 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T HK N+ + + I LV + + + Sbjct: 187 TVEGHKSNLFIKTEARNIAGLVIYAIQNNYI 217 >UniRef50_B1ZT64 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZT64_OPITP Length = 274 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 73/203 (35%), Gaps = 35/203 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMNNVFHS 55 ++ + ++ +++ + + E ++M + VI D + Sbjct: 44 IYVVDDHPLMRMGLRAMINGEPDMEVIGEAADSATATAEIMKLRPDLVIADISLRGNSGI 103 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPR---TITIIDFVALINGSYC 107 + ++ P + V++ S ++ R L +V + T ++D + Sbjct: 104 ELIKNVKAFDPGIDVVVVSMYDESIYALRVLKAGARAYVMKQDVTTRVLDAIRRARNGQL 163 Query: 108 ---------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + SLS ++ ++++ I + T +I KL +S+KT Sbjct: 164 FVSERVATQMLNRFVDGTEDGAADSPVSSLSDRELEIVNLIGEGLPTREIAAKLFLSIKT 223 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H+ +I LNL +LV+ Sbjct: 224 VETHRVHIKRKLNLANATQLVQF 246 >UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC81D Length = 209 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 68/204 (33%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 ++ + + +L+ + + E + V L +++D M + Sbjct: 5 VVLADDHVLMRQGVSQMLNANPDISVVGECDDGVALIAAVLKLSPDVILMDISMPRMSGL 64 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + +I + +++ S N I+ ++ + + V I Sbjct: 65 VAIDKILSQRSDAKILVLSMHNEVEYIEAMRDAGAKGYILKESSGESLVEAIKKVAANKT 124 Query: 108 ---------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 L+R++ +V + T++ I E L +SLKT H+ Sbjct: 125 CFPDELTQSSSDQCQKHVSPLSVLTRREREVFFLVVAGNTSKKIAELLDMSLKTAENHRS 184 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 NI LNL EL+R L+ Sbjct: 185 NIYKKLNLSSSAELIRMAGKAGLL 208 >UniRef50_C6W5G0 Two component transcriptional regulator, LuxR family n=2 Tax=Flexibacteraceae RepID=C6W5G0_DYAFD Length = 219 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 38/211 (18%) Query: 4 IITRDTMFFTAMKNILSKGNVVHI-----QNEEEID-VMLHQNAFVIIDTLMNNVFHSNF 57 I +F ++LS +E +D + + V +D M + Sbjct: 8 IADDHELFRKGFISMLSGIPDFEFILEAGNGQELLDRLPANTPDIVFMDLQMPVMDGIQA 67 Query: 58 LTQI-ERLKPVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYCS---- 108 ER + +I+ S +N R L K ++ + + + I + Sbjct: 68 TEAAFERFPNIKIIVVSMYNEDRFVIHMLEKGVQGYLLKDTSPDEVEKAIRRVHEEGFYY 127 Query: 109 -----------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 V+LS ++ +VL I + ++T +I +KL IS++ Sbjct: 128 NDFVSKAMHRKMVNRQVNKHPFFPNACNVALSSREKEVLQLICDGLSTTEIGDKLFISVR 187 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H+ ++ K V + + L+ Sbjct: 188 TVEGHRLRVLEKTGTKSTAAAVAFAYKNQLL 218 >UniRef50_Q3A5X6 Transcriptional regulator, LuxR family n=2 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5X6_PELCD Length = 223 Score = 136 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 39/214 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVML-HQNAFVIIDTLMNNVFHS 55 + + T ++ LS+ + E ++ + + +ID M + Sbjct: 9 VFLADDHPLLRTGLRMSLSRFADIDFIGEASDGFKAVEKIKQNPPDVALIDVDMPGLSGI 68 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN----GSY 106 + + + P ++I S ++ I+ + +V ++I I + LI G + Sbjct: 69 AAVRMLRKQYPDMTLLILSSYSDKHFIEEAMQAGADGYVLKSIDINELADLIRAFSCGEH 128 Query: 107 CSVP------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 P E+ L+R++ Q+LSC+A ++I L I Sbjct: 129 PMSPYLMDLAVDWHASEQEEESPADKDDESDAFLTRREQQILSCLAQGQGNKEISNALFI 188 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 S +T H NI L +K E V L+ Sbjct: 189 STETVKTHIKNIFKKLEVKSRLEAVIAAKEKKLI 222 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 +I + + ++ +L + + E E V H +++D M Sbjct: 16 VVIADDHRVVRSGLRMVLDAEPDIAVVAEAGDVPSAERAVRAHHPHVLVLDLNMPGEQSL 75 Query: 56 NFL-TQIERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + + L V++ + P + L +V + + V + Sbjct: 76 PAIPRLVAELPETAVVVLTMQQDPAFAREALRSGARGYVLKEAADDELVQAVRLAREGRT 135 Query: 104 ----------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 + L+ ++ +VL IA T +I ++L +S++T H+ + Sbjct: 136 YLNPELGARMAAEPPPSGPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAH 195 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I + ELVR+ L+ Sbjct: 196 IQQKVRRSSRAELVRYALDHGLM 218 >UniRef50_Q8PM22 Transcriptional regulator n=3 Tax=Xanthomonas RepID=Q8PM22_XANAC Length = 237 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 71/206 (34%), Gaps = 32/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 ++ T+ M +L K + + E + + V++D L+ + Sbjct: 6 IVVAADRTILVEGMVALLQKVPGIEVVGHAEDGLACLQIAARERPDIVLVDVLLPGLNGI 65 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + ++ + P I +P + ++ RT + + I Sbjct: 66 DLTRRLMQRSPNSRAICIAPSDACTQSSAVFEAGAKAYLARTSRFAELLRAIQCVIQDQT 125 Query: 104 --------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 A L+ ++ +++ + ++T I +L +S+KT Sbjct: 126 YISPQMSRSLIAGLRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGT 185 Query: 150 HKHNIMMILNLKRINELVRHQHIDYL 175 H+ N M+ LN++ I +L R+ L Sbjct: 186 HRENCMLKLNIQSIAQLTRYAIAQGL 211 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 76/203 (37%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMNNVFHS 55 +I + + +LS + + + + ++ ++D M + Sbjct: 6 VALIDDHIVVRSGFAQLLSLEGDIQVVGQYASAADAGVSLLKLNVDVAVMDIAMPDESGL 65 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + L ++ + +P II S ++ ++ L ++ + + V + + Sbjct: 66 SLLARLRQKRPTFRAIILSIYDTAAFVQSALDAGACGYLTKRCGPEELVQAVRAVHAGGS 125 Query: 108 --------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P+A +L+ ++ ++ + N ++ + I E+L +S KT + H+ N Sbjct: 126 YLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIAEQLDLSHKTVHVHRAN 185 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 ++ L+ ELV L+ Sbjct: 186 VLDKLHCATTVELVHFALQHQLL 208 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 31/205 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 +I + + ++ +L + + E + H VI+D + + Sbjct: 8 IVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPVLNGL 67 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVA----LINGSY 106 I R P ++ + I+ L ++ + + VA LI G Sbjct: 68 EATRIIRRTMPETEVLIYTMHEDESLIRETLRAGARGYLLKIEDDSELVAAVAALIRGQT 127 Query: 107 CSVPEAAVS----------------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 P + L+ ++ +V+ ++ + + I +L +S+KT H Sbjct: 128 YFSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKTVDSH 187 Query: 151 KHNIMMILNLKRINELVRHQHIDYL 175 + M L L+ +LVR+ + L Sbjct: 188 RTTAMRKLGLRNAVDLVRYAIRNKL 212 >UniRef50_Q3BU15 Two-component system response regulator, LuxR family n=12 Tax=Xanthomonadaceae RepID=Q3BU15_XANC5 Length = 221 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 +I+ T+ + +L + + E LH+ V++D + Sbjct: 14 VIIVDDHTLVRAGLSRLLQTFAGIDVVGEASNAQQALDMTSLHRPDLVLMDLSLPGRSGL 73 Query: 56 NF-LTQIERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + + HV++ S P +++ L + V FV + ++ + + Sbjct: 74 DAMTDVLRAAPRTHVVMMSMHDDPVHVRDALDRGAVGFVVKDAAPLELELALRAAAAGQV 133 Query: 108 -----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 P +LS +Q ++L I + ++I L IS+KT H Sbjct: 134 FLSPQISSKMIAPMLGREKPVGIAALSPRQREILREIGRGQSNKEIAADLGISVKTVETH 193 Query: 151 KHNIMMILNLKRINELVRHQ--HIDYLV 176 + +M L +R N+LV H + LV Sbjct: 194 RARMMESLGCRRANDLVLLAAKHHNELV 221 >UniRef50_C1B8T3 NarL family two-component response regulator n=61 Tax=Bacteria RepID=C1B8T3_RHOOB Length = 276 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 27/194 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLM-NNVFH 54 L+ + ++ +L + + + E V++D Sbjct: 4 LLLADDHAIVRAGLRALLEHEDDIEVVGEAATADAAVALCATTPVDLVLMDLRFGPGTSG 63 Query: 55 SNFLTQIERLK-PVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV 109 + + L P HV++ + ++ I + ++ + + +A + + Sbjct: 64 VDATRNLRSLPNPPHVLVVTNYDTDADILDAVAAGAAGYLLKDTPPPELLAAVRAASAGD 123 Query: 110 P---------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 A SLS ++ QVL+ +A + +I ++L +S T H +I Sbjct: 124 SVLSPAVASKLMTRVRRPATSLSPREIQVLTLVAAGRSNREIGKELFLSETTVKSHLVHI 183 Query: 155 MMILNLKRINELVR 168 L +K R Sbjct: 184 FGKLGVKSRTSANR 197 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 79/205 (38%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLHQ--NAFVIIDTLMNNVFHS 55 L+ + ++ L+K + + E E + H+ +++D M + Sbjct: 7 VLLADDHALVRDGIRARLNKVPEIEVVGEATNGREAVKLAHELRPDVLLMDVSMPVMNGL 66 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 ++ + P V+I S + ++ + ++ + I+ + + I+ Sbjct: 67 EAAAEVRKSFPEIAVLILSIYDNSEYVRGVVQAGARGYILKDISAPEMITAISSVASGGY 126 Query: 104 -----------GSYCSVP-EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 G+ S P E L+ ++ QVL+ IA + +++ + L IS++T H+ Sbjct: 127 YFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLGISVRTVESHR 186 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 N+ + K +L + L+ Sbjct: 187 LNLREKVGNKNAAQLYKVAQDLGLL 211 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 LI+ +F ++ ++ + + E Q V++D M + Sbjct: 30 VLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMVAELQPDVVLMDINMPGMDGI 89 Query: 56 NFLTQI-ERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 I ++ + VHV++ + + + + +++ + + + I+ Sbjct: 90 RATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSYLVKNSKPEELLRAIHVAAEGGA 149 Query: 104 ---------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 P LS ++ +L +A I + L ++ T Sbjct: 150 TIDPDLAPILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAESTVK 209 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 + + L ++ + V + LV Sbjct: 210 NNLSALFQKLGVRDRTQAVIYAISHGLV 237 >UniRef50_Q024A4 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q024A4_SOLUE Length = 225 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 76/199 (38%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVML-HQNAFVIIDTLMNNVFHS 55 LI + + I++ + + + E + + H +++D M + Sbjct: 25 VLIADDHPVVCLGLLGIINGQPDMTVVGQAKTGTEAVALARKHSPDVILMDLRMPGMSGV 84 Query: 56 NFLTQIERLKPVH-VIIFSPF----NIKRCLGKVPVTFVPRTIT---IIDFVALINGSYC 107 I +P VI+ + + +I++ L +++ + ++ +++ + + + Sbjct: 85 EATEVIRAERPESAVIVLTTYQGDEDIRKALAAGAQSYLLKGMSHLKLLEAIRSVRTGHT 144 Query: 108 SVPEA----------AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 P A +LS ++ +L I ++ ++I + L I+ T H + I+ Sbjct: 145 YFPRAIRNSVPGKLNRAALSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRR 204 Query: 158 LNLKRINELVRHQHIDYLV 176 L++ + V +V Sbjct: 205 LDVNDRTQAVVVAVQRGIV 223 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 68/208 (32%), Gaps = 35/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE----EEIDVMLH--QNAFVIIDTLMNNVFHS 55 + + ++ +L+ + + E E M+H ++D M + Sbjct: 7 VALADDHPIVLAGIRTLLNADPEIELVGEATSGSEALPMIHAADPDVAVVDVSMPGLNGL 66 Query: 56 NFLTQIERLKP-VHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 ++ P V++ + ++ L ++ + D + + Sbjct: 67 ELTERVAGSCPRTRVLVLTVHEDAAYVQPLLKAGARGYLLKRSAAEDLLRAVRAVAAGGI 126 Query: 108 -----------SVPE----------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + P +A +LS ++ VL IA + ++I + +S+K+ Sbjct: 127 YLDPSVASHAMAHPATPTQGGDTEPSAEALSPRETDVLRLIAQGFSNKEIARRFDLSVKS 186 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDY 174 +K L L+ E++R+ Sbjct: 187 IETYKARAAEKLGLRTRAEIIRYAAAHG 214 >UniRef50_C7MUJ2 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=101 Tax=Bacteria RepID=C7MUJ2_SACVD Length = 239 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVM-LHQNAFVIIDTLMNNVFHS 55 ++ + + ILS + + + E E ++V + V++D M + Sbjct: 23 VVLADDQDLVRAGFRVILSSDDGIEVVGEAGDGWEAVEVATRERADVVLMDVQMPKLDGL 82 Query: 56 NFLTQIE----RLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN---- 103 ++ P VII + F + L F+ + + D + + Sbjct: 83 EATRRLLGPAGADHPTKVIILTTFDREDYLFEALRAGASGFLLKNASPEDLIESVRIVAR 142 Query: 104 -------------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 + L+ ++ +VLS +A + +I +L + Sbjct: 143 GDALLSPEVTRRVIARFSAPAVTGPTRRPSELTDREFEVLSLLAKGASNAEIARQLVLGE 202 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H I+ LNL+ V + + +V Sbjct: 203 TTVKTHVSRILTKLNLRDRTHAVVFAYENGIV 234 >UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR family n=16 Tax=Proteobacteria RepID=B2JVJ8_BURP8 Length = 219 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 32/202 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 L+I +F + ++ + E + + V+ID M ++ Sbjct: 7 VLLIDDHALFRKGVAQLIQMNPAFRVVGEASSGRVGVDLAVRLKPDVVLIDLNMPDMNGI 66 Query: 56 NFLTQIERLKPVHVIIFSPF-----NIKRCLGKVPVTFVPRTITIIDF------------ 98 L + + + ++ L ++ + + + Sbjct: 67 ETLEMMRQHGVDARFLMLTVSDNERDVVAALRAGASGYLLKDMEPEELCLNLQKALQGTA 126 Query: 99 --VALINGSY-------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + G +P +LS ++ +VL + M ++I KL IS+ T Sbjct: 127 VLSEAVTGKLFHALSAGQPLPANQSNLSVREQEVLDYLVEGMCNKEIARKLDISVGTVKV 186 Query: 150 HKHNIMMILNLKRINELVRHQH 171 H +++ L+L E V H Sbjct: 187 HVKHLLHKLDLHSRVEAVVWHH 208 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 134 bits (339), Expect = 9e-31, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 68/205 (33%), Gaps = 31/205 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVMLHQN-AFVIIDTLMNNVFHS 55 LI+ + ++ IL + E ++VM HQ I+D M + Sbjct: 15 ILIVDDHVIVREGLQRILEATGAGWVVAEASSGFQALEVMRHQPIDLAIVDLSMPGMNGL 74 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALINGSY---- 106 + + +I P V V++ S + R +V + + V + Sbjct: 75 DLIKRIRTEFPRVRVLVLSMHAEEQYAMRAFKAGANGYVTKDGASAELVNAVRKVATGGA 134 Query: 107 ----------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 + LS ++ +VL I DI E L +S+KT H Sbjct: 135 YVTASLAERVVLQLNGATTAPGHAQLSDRELEVLRRIVAGERITDIAEALHLSVKTVSTH 194 Query: 151 KHNIMMILNLKRINELVRHQHIDYL 175 K I L L + L+R+ L Sbjct: 195 KSRIQEKLQLPTMAALIRYGMAHGL 219 >UniRef50_C5D3Y5 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacillus RepID=C5D3Y5_GEOSW Length = 199 Score = 134 bits (339), Expect = 9e-31, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 19/194 (9%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE------EEIDVMLHQNAFVIIDTLMNNVFHS 55 L++ + ++ +L + + N E +++ H +++D M N Sbjct: 5 VLLVDDHLLVMLGIQQLLENEADLEVVNTICHPARLEEEIIKHNPDVIVMDIRMKNDNGI 64 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + +I P V+I S + I FV + + + I S+ + Sbjct: 65 EWTKKIAETYPTCKVVILSGYDYDEYIHAAYEAGAYAFVTKENSAFELANAIRQSHLGIK 124 Query: 111 EAA--------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKR 162 L++ + +L I+ T +I E L IS +T H +I+ L++ Sbjct: 125 SFPIDRLSNYNSPLTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDS 184 Query: 163 INELVRHQHIDYLV 176 V ++ Sbjct: 185 RVGAVVKAMKLGIL 198 >UniRef50_B8CMA1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Gammaproteobacteria RepID=B8CMA1_SHEPW Length = 196 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 81/193 (41%), Gaps = 18/193 (9%) Query: 2 FLIITRDTMFFTAMKNIL-SKGNVVHIQ--NEEEIDVML-HQNAFVIIDTLMNNVFHSNF 57 +I + + +L ++ V+ I EE ++++ H VI D M + Sbjct: 4 IIIADDHLIVAQGIAGLLKAEHQVLAIAKDGEELVELVKQHDPELVITDISMPGMTGIAA 63 Query: 58 LTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSYC----- 107 + ++R+K +I + ++ + + +V + D V +N Sbjct: 64 VAALKRIKKDLRVICLTMHDEQEYAEGAIAAGALGYVLKHEATDDLVDAVNSVLAGKQYL 123 Query: 108 ----SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRI 163 V ++A +LS +Q VL +A + + + + L IS +T HK++IM ++ K Sbjct: 124 SKSVQVEDSAPTLSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEAKSS 183 Query: 164 NELVRHQHIDYLV 176 EL+++ LV Sbjct: 184 AELIQYALSRGLV 196 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 85/218 (38%), Gaps = 44/218 (20%) Query: 3 LIITRDTMFFTAMKNILSKGNVVHIQNEE-EIDVMLHQ-----------NAFVIIDTLMN 50 +++ ++ ++ +L + + + I +E + + +L + +++D + Sbjct: 1 MLVDDHSIVRDGIRLLLEQADGLEIIDEANDGEEVLDKLKVLQPDPSLLPDLILMDISLP 60 Query: 51 NVFHSNFLTQIERLK-PVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN-- 103 + I RL V V++ S N I R + ++ + + + + I Sbjct: 61 GMSGIQTTQVISRLYKNVRVLMLSMHNNEDYILRSVEAGAYGYILKDSSSDEMIKAIRTI 120 Query: 104 -------------------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILE 138 G E LS K+ ++L + + M++ +I E Sbjct: 121 ASGEKYYSSPVASIILSGYMQQLKKGDRHGRAERQSKLSNKEKEILQFLVDGMSSREIAE 180 Query: 139 KLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 KL++S++T H+ N+M L ++ ELVR D L+ Sbjct: 181 KLQLSVRTVDNHRANMMRRLQVRNAAELVRMAVEDKLI 218 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 39/214 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ-----NEEEIDVML-HQNAFVIIDTLMN-NVFH 54 +I + T IL+ + + E +L H+ +I+D M Sbjct: 3 IVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHRPDVLILDLSMPPGESG 62 Query: 55 SNFLTQIERLKPV-HVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSY--- 106 ++I P ++I + F+ + L ++ + + + Y Sbjct: 63 LIATSKISESFPDTKILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTVYQGE 122 Query: 107 ------------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 S + LS+++ ++L IA +DI EKL + Sbjct: 123 TYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFV 182 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 S+KT HK +IM LNLK ELV + L+ Sbjct: 183 SVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLL 216 >UniRef50_A4J6C2 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=A4J6C2_DESRM Length = 218 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHS 55 LI + ++ ILS + + E + +D L V++D M + Sbjct: 7 LLIADDHILIREGLRKILSIEPHISVVGEVTNGQQAVDYCLKNPVDIVLMDINMPIMNGI 66 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 QI++L P II + + + +V + I + I G Sbjct: 67 EACRQIKKLNPNIGIIALTIHDQDEYLFELIKYGISGYVLKDIHPDQLIKTILGVAQGES 126 Query: 109 ----------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + ++L+ ++ +VL +A + + I L IS KT Sbjct: 127 FIPPSLTARVLAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANALYISEKT 186 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H NI + + + + + LV Sbjct: 187 VKNHLTNIFQKIGVADRTQAALYAIKEKLV 216 >UniRef50_B2A8K6 Two component transcriptional regulator, LuxR family n=9 Tax=Clostridia RepID=B2A8K6_NATTJ Length = 228 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 69/206 (33%), Gaps = 40/206 (19%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-----IDVM-LHQNAFVIIDTLMNNVFHS 55 L+ +F +K IL + + E + +D + L + +++D M + Sbjct: 12 ILLADDHALFRQGLKKILDMEEDLAVCGEAQNGEEVVDKVKLLKPNIILMDINMPLLNGV 71 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALI-------- 102 ++ + P +I + + + F+ + + V I Sbjct: 72 EATKYVKEVSPETKVIALTIHEDEEYLFEIVKEGAAGFLLKDVETPTLVQAIQEVNKGNS 131 Query: 103 ---------------------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLK 141 + S L+ ++ ++L +A T ++I ++L Sbjct: 132 FIHPTITHKLLGEFNRLAQNSPRNIKSDEAVQSELTGREKEILELMAQGYTNKEISKELY 191 Query: 142 ISLKTFYCHKHNIMMILNLKRINELV 167 IS KT H NI+ +++ + V Sbjct: 192 ISEKTVKNHVSNILRKMDVTDRTQAV 217 >UniRef50_B1ZN14 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B1ZN14_OPITP Length = 215 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 81/206 (39%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVMLH-QNAFVIIDTLMNNVFHS 55 +I+ T + IL + E + + L + +++D + + Sbjct: 4 LVIVEDQTAIREMLVEILRLDANYQLVGESGDGQSALALCLEVKPDLLVLDAKLPGLNGV 63 Query: 56 NFLTQI-ERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + L +I ++L + V++FS P I+ L FV +T + +F + Sbjct: 64 DLLRRISKKLSGMRVLVFSGHENPVLIREMLEAGAHGFVEKTAGLFEFKKGLETVASGGT 123 Query: 108 -----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 S A L+ ++ ++L +A +T++I KL IS+KT H Sbjct: 124 YFGPAVAALLRNVVANPSASNTADFLTDREREILQLVAESHSTKEIAAKLGISIKTVDNH 183 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + N+M LNL + L R+ L+ Sbjct: 184 RTNLMRKLNLHDVASLTRYALEVGLI 209 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 65/200 (32%), Gaps = 28/200 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-IDVMLH-----QNAFVIIDTLMNNVFHS 55 L++ + ++ L + + E + L V+ D M Sbjct: 7 ILLVDDHPLVRDGVRMRLEATEHICVAGEAASVGESLPLAHALAPDIVLTDIRMPAASGI 66 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + P V V++ S ++R + +V + + I + Sbjct: 67 HLAAVFREQFPRVRVLVLSMHDDAEYVRRAVSLGARGYVLKDAPAQQLIEAIEAVHQGGC 126 Query: 108 --------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 SV + SL+ ++ VL ++ + ++I + S++T H+ + Sbjct: 127 YFSPGLEQLLDDAGSVARSNRSLTPREASVLQWVSEGRSNKEIAALMGTSVRTVETHRLH 186 Query: 154 IMMILNLKRINELVRHQHID 173 + L ++ L+++ Sbjct: 187 LRRKLRIEGQAALMKYAVDH 206 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQ-NAFVIIDTLMNNVFHS 55 I + M+ +LS+ ++ + E E ++V+ + +++D M Sbjct: 4 IAIADDHALLREGMRRMLSQSELIEVVGEASNGAEAVEVVKEKAPDVLLLDITMPVKDGI 63 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSY---- 106 I L I+ + R L F+ + + + + I + Sbjct: 64 EATADILALNVNTKILILSMHADEQYALRTLRAGANGFISKGARLEELLKAITDVHEGQR 123 Query: 107 -----------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 + +LS+++ QV++ +A MT +I L+IS+KT Sbjct: 124 YLPDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKTVDT 183 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H+ +++ L L+ +++ R + Sbjct: 184 HRSHVLKKLELRNNSDITRFAIQHGYI 210 >UniRef50_B4CWX5 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B4CWX5_9BACT Length = 210 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 28/199 (14%), Positives = 70/199 (35%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE--EIDVM----LHQNAFVIIDTLMNNVFHS 55 L++ + + + L + +++ E + + H V++D + + Sbjct: 9 ILVVDDHHVVRSGLAASLGLEDDLNVVGEAGNAGEAVTQFRKHHPDVVLMDLRLPGANGT 68 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + R P V++F+ F+ I R + ++ ++ + ++ I Sbjct: 69 AATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLKSAAREELLSAIRAVAAGER 128 Query: 111 EAAVSL-------------SRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 + +L S ++ +VL IA ++I L IS +T H N+ + Sbjct: 129 HLSAALAQRLAGRVAAPDVSDREREVLQLIARGKANKEIAAALGISEETVKRHASNLFVK 188 Query: 158 LNLKRINELVRHQHIDYLV 176 + + + L+ Sbjct: 189 MGVADRAQATSEGIRRGLI 207 >UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Actinobacteria (class) RepID=D2AX12_STRRD Length = 239 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 LI+ + + ILS + E E + V++D M + Sbjct: 13 VLIVDDQPLVRRGLSLILSPDPSFEVVGEAENGAQAVTLARRLRPDVVVMDIRMPVLDGV 72 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYC--- 107 ++ P V+ S F++ L F+P+ + D A I + Sbjct: 73 GATRELAATVPDCRVLALSTFDLDEYVVGALRAGAYGFLPKDSSPEDLSAAIRTVHAGEA 132 Query: 108 ----------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 P L+ ++ +V +A + I L ISL Sbjct: 133 AVAPRLLTRLISTYVRAPHGTRPTPTGLGELTPREVEVWRLMATGLDNTGISRTLDISLS 192 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T + +I L ++ + V + LV Sbjct: 193 TVKNYITSIFDKLAVRDRAQAVIVAYESGLV 223 >UniRef50_B1ZY58 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=B1ZY58_OPITP Length = 223 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ-----NEEEIDV-MLHQNAFVIIDTLMNNVFHS 55 L++ + ++ + + EE I++ Q V++D M + Sbjct: 22 VLVVDDHPPMRVGLVALIRSQPGMDVVAEASDGEEAIEIYDDLQPDVVLMDLRMPGMGGV 81 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDF---VALINGSYC 107 + I + P VI+ S ++ I R L +++ + + I + V + Sbjct: 82 EAILAIRKKAPEARVIVLSTYDWDEDIHRALQSGAKSYLLKDMPIEEIASTVRAVYAGDT 141 Query: 108 SVPEAAV----------SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 S+P + L+ ++ VL + + ++I L IS T H + Sbjct: 142 SLPRSVAERLTERAQREQLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAK 201 Query: 158 LNLKRINELVRHQHIDYLV 176 L ++ +V Sbjct: 202 LRVRDRTGAAIEAIRHGIV 220 >UniRef50_D0LE76 Response regulator receiver n=2 Tax=Actinomycetales RepID=D0LE76_GORB4 Length = 228 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 67/208 (32%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMNNVFHS 55 L++ + T ++ IL + HI E V H V++D M NV Sbjct: 16 VLLVDDQELIRTGLRRILRVRDGFHIVGECADGSEVPAAVAEHSPDVVVMDLRMRNVDGI 75 Query: 56 NFLTQIERL-KPVHVIIFSPFNIKRCLG----KVPVTFVPRTITIIDFVALIN------- 103 + + L P V++ + F+ + L F+ + + + Sbjct: 76 TATSMLAALNDPPPVLVLTTFDDDKLLSGALRAGAAGFILKDSPAESLIWAVRAVVRDGA 135 Query: 104 ---------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 S L+ ++ VL +A T +I L IS T Sbjct: 136 FLDPAVTGRVLTGYRRSTTGDIATPDELTERETDVLRLVARGRTNAEIAAGLGISEVTVK 195 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H ++I L+L+ + + LV Sbjct: 196 SHINHIFTKLDLRDRAAAIVYAFDHSLV 223 >UniRef50_A5FAW2 Two component transcriptional regulator, LuxR family n=2 Tax=Flavobacterium RepID=A5FAW2_FLAJ1 Length = 219 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEI------DVMLHQNAFVIIDTLMNNVFHS 55 + + + N+L + I DV+ Q +++D M Sbjct: 6 IHLADDHQVLIDGLTNLLQTVSNFEIVGSSLNGVTVYDDVIQDQADILVLDISMPQKDGI 65 Query: 56 NFLT-QIERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 L ++ P VII S + IK + ++ + + + I Y Sbjct: 66 EVLKEFNQKGLPCKVIILSSYDDLKIIKEVMKLGAKGYLTKKCAGENMIEAIEAVYEGQE 125 Query: 111 --------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 LS ++ ++++ I + + ++I EKL IS+ Sbjct: 126 YFSDAVREKIFSMFSQNNPKLNKNVYIENPILSPREIEIVTLICLEYSGKEISEKLFISV 185 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H+ NIM LN+K LV++ + L+ Sbjct: 186 NTVETHRKNIMKKLNIKNTIGLVKYALKNNLI 217 >UniRef50_B5EEC0 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=B5EEC0_GEOBB Length = 216 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVML-HQNAFVIIDTLMNNVFHS 55 ++ MF M+ +L + + + E ++ L + V++D M + + Sbjct: 5 IILADDHVMFREGMRALLEREEDMVVVAEAGDGVSVVEKTLENMPDVVVLDLSMPGMNGT 64 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 + I + P II + R L +F+ + + V + + Sbjct: 65 EAASVIHQKVPGIGIIILSMHSDRQYVIEALKLGVKSFILKEWAFQELVTAVRCVFKDTS 124 Query: 110 -------------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 P SL+ ++ Q + ++I +LKIS KT + Sbjct: 125 YLSPRLSDIIISGLADEGKPLGKYSLTPREEQAYRLLVAGKNCKEIGYELKISSKTVETY 184 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + +M LN+ I +LV H + +V Sbjct: 185 RLKVMKKLNISNIAQLVNHAVQEGIV 210 >UniRef50_C1RMQ2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Actinomycetales RepID=C1RMQ2_9CELL Length = 254 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 62/212 (29%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 L++ + ++ +L V + E + + ++D M + Sbjct: 12 VLVVDDQPLIRQGIRAVLRGQPGVEVVGEAHDGHSAVRTARRLRPDVTLMDVQMPGMDGV 71 Query: 56 NFLTQI--ERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFV---------- 99 I + P V++ + + ++ L V + + V Sbjct: 72 EATRVICADDDPPTSVVVLTMYDQDEHVFEALRAGARGLVLKDAPTSELVAAIHAAAAGD 131 Query: 100 ---------------ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 A + L+ ++ V + ++T + E+L + Sbjct: 132 SLLSPSVTRRLIEEFARRPTVRMEATDGPAELTARERDVFRLLVQGLSTAEAAERLTLGD 191 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H ++ L ++ + V + + LV Sbjct: 192 STVKSHVQSLYRKLGVRDRVQAVIYAYEHGLV 223 >UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR family n=89 Tax=Bacteria RepID=C7Q6M6_CATAD Length = 225 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 33/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 LI M ++ L + + E + +++D +M V Sbjct: 10 VLIADDHRMVRQGLRTFLELQEGIEVAGEAADGAECAERAAELEPDVILLDLVMPGVDGV 69 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKRCL----GKVPVTFVPRTITIIDFVALINGSYCSV- 109 + + V++ + F +R + +V + + A + + Sbjct: 70 GAMELLREAGSTARVLVVTSFTDRRMIIPAIRAGARGYVYKDVDPAALAAAVRSVHAGHV 129 Query: 110 ---PE------------------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 PE A +L+ ++ +VL IA +I L ++ KT Sbjct: 130 LLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLAEKTVK 189 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYL 175 H NI+M L + + + Sbjct: 190 THVSNILMKLGVADRTQAALWAVRHGI 216 >UniRef50_C5V5K1 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K1_9PROT Length = 211 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 70/205 (34%), Gaps = 31/205 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 ++ + + + + + E L Q V++D M + Sbjct: 5 LIVTDDHELVRAGLLQLFEGAPGIEVVGEAVNGEELMRKLQATQVDLVLLDLDMPGENGA 64 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 N + +I R P +I+ + + R + ++ + + + I+ + Sbjct: 65 NLIERIRRHYPDLLILILSAHDEIKVVSRAVQAGASGYICKDCSPKTLLEAIHKVVATGK 124 Query: 111 --------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 + LS ++ ++ + ++ +DI +L IS +T H Sbjct: 125 YLSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDDISRQLFISDRTVSAH 184 Query: 151 KHNIMMILNLKRINELVRHQHIDYL 175 K N++ L LK + ELV + L Sbjct: 185 KINLLNKLGLKNVVELVHYSIQHQL 209 >UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM6_EIKCO Length = 215 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 29/203 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L++ +F + +L++ I E + H+ V++D M + Sbjct: 8 ILLVDDHPLFRRGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMPVMNGP 67 Query: 56 NFLTQIERLKPVHVIIFSPF-----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 L Q+ +P ++ N+K+CL ++ + V I + Sbjct: 68 EALAQMLDFQPGLPVLMLTISEDADNLKKCLELGARGYILKNADTDFLVEAIRQAVAGQQ 127 Query: 108 ---------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 SL++++ VL +A ++ + I ++ +S T H Sbjct: 128 TVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSENTVKAHMQ 187 Query: 153 NIMMILNLKRINELVRHQHIDYL 175 NI LN+ + L Sbjct: 188 NIFRKLNIDNRVRAAVYARELGL 210 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 73/203 (35%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 I+ M +K LS + + I + + + +++D M + Sbjct: 11 VQIVDDHPMVQGGLKACLSFYDDIIIVGSTDDGSDALNKAIELKPDVILMDISMPTMNGI 70 Query: 56 NFLTQI-ERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + I E+L V+I S P +K + V ++ + T + I Sbjct: 71 DATEIITEQLPETKVLILSMHSNPEFVKSAIQAGAVGYLLKDTTSEEIYYAIKAVANGKT 130 Query: 111 -----------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 + L+ ++ VLS +A T+++I + L IS +T H+ N Sbjct: 131 HFSSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRN 190 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 + L + + +L+ + ++ Sbjct: 191 MKTKLGIHSLAKLISYAVKHGII 213 >UniRef50_Q1LE49 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderiaceae RepID=Q1LE49_RALME Length = 264 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 LI+ + ++++LS H+ E + +++D + + Sbjct: 7 VLIVEDHNLLRAGLRSMLSAQMGYHVAGEARDGREACQLAISLCPDLILMDLSLPGMNGI 66 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + + I+R P + +I S ++ L +V + + D V + Sbjct: 67 DAIAAIKRRSPGIRIIALSVHQNDEYVREALRAGVDGYVLKDTSFDDLVTAMRVVLLGKK 126 Query: 104 -----------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + L+ ++ VL +A + + + +S KT Sbjct: 127 HLSPELYGNLVESYVSGHEMSTAKTGWDLLTARERSVLKLVAEGRSNRQVGIYMNLSPKT 186 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 ++ ++M L + + ELV L+ Sbjct: 187 IEKYRASLMRKLGITNLTELVLIAISMGLI 216 >UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNZ3_9GAMM Length = 223 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 40/215 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNV--- 52 L++ + + +L + I E + H VI+D M + Sbjct: 7 ILLVDDHPLVRAGFQRLLISDESIEIVGEADNGQSACEMYASHMPDVVIMDLNMPSDANT 66 Query: 53 --------FHSNFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFV 99 + +I P V++ + I + F+ + + + Sbjct: 67 EEMSNNLNGGLEAIRRIISHDPKAKVLVLTAMEIDPFPAHVVNAGAKGFLTKRCAPDELL 126 Query: 100 ALINGSYCSVP------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLK 141 + + + SL++++ Q+ S +A T + E++ Sbjct: 127 EAVKAIHAGEEYITEEIRLRITEGGSADGASLASLTKRELQIFSLLAEGRTVSIVAEEMF 186 Query: 142 ISLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 +S KT + H+ NI L + +ELV +V Sbjct: 187 LSPKTVHAHRTNIFRKLKISNNSELVHLAIRHNIV 221 >UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 Tax=Bacteria RepID=Q3Z8L1_DEHE1 Length = 224 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 35/203 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 L+ + + ++ + + + + E V M V++D M + Sbjct: 9 VLLADDHVIVREGTRELIQRESGMMVVGEASDGVEAVEMSMKVHPDVVVMDIAMPRLNGI 68 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 QI++L P I+ I L +F+ + + + I Y Sbjct: 69 EATKQIKQLLPTTAILILTAYESEQYILAILEAGAASFLLKNVKGTQLLEAIRAVYAGES 128 Query: 111 ------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 A L+ ++ +VL A ++ +DI ++L +S +T Sbjct: 129 VLQPSTTRRVIDQLINKATKTEEVSAVNPLTDREIEVLKMAARGVSNKDIADQLYLSNRT 188 Query: 147 FYCHKHNIMMILNLKRINELVRH 169 H NI L++ E + + Sbjct: 189 IQTHLSNIFKKLSVGSRTEAILY 211 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 70/204 (34%), Gaps = 32/204 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMN-NVFH 54 L++ TM ++ +L + + I E + V++D + + Sbjct: 4 VLLVDDHTMIRKGLRVLLESYSQIKIVGESHTGNDAILKANQLKPDVVLMDLSLPNGLDG 63 Query: 55 SNFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSY--- 106 +I + P+ I+ + ++ + ++ + I Y Sbjct: 64 FTASKEIRKSNPLVKIVILTMHDEEIFVQEAITVGAHGYILKNSHGELLFQAIVEVYRGK 123 Query: 107 -----------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 L+ ++ +++ I + +++ +KL IS+KT Sbjct: 124 CFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRLIVLGYSNKEMADKLLISVKTVEN 183 Query: 150 HKHNIMMILNLKRINELVRHQHID 173 HK NIM L L ++L+++ + Sbjct: 184 HKTNIMQKLGLDSKHQLIQYAIKN 207 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH-----QNAFVIIDTLMNNVFHSN 56 LI+ + A++ L + + L+ + VI+D + + Sbjct: 5 VLIVDDHPVVCEAIRKTLESQGYTIVGETADGISALNMILSLRPDIVILDVSLEKMDGLT 64 Query: 57 FLTQIERLK-PVHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALI--------- 102 L +I + V V++F+ ++ RCL FV + + + + Sbjct: 65 VLKRIAQANLDVRVLVFTAQSVDTYAMRCLQAGASGFVSKNEPLTKLLKAVDTIVEGYVF 124 Query: 103 ----------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 G + +L+ ++ +VL +A +T +I EKL +S KT HK Sbjct: 125 FPKKSMPFSDGGRGKHSSDVLAALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKI 184 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 NI+ L + + +LV + LV Sbjct: 185 NILSKLGVTSVVDLVNIARQNELV 208 >UniRef50_C7PZ17 Two component transcriptional regulator, LuxR family n=15 Tax=Actinomycetales RepID=C7PZ17_CATAD Length = 229 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 44/217 (20%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 LI + +L + V + + V++D M Sbjct: 6 VLIADDQAAVREGLALLLETMSDVTVVGQAGDGLEAAALAAELAPDVVLMDLNMPRSDGI 65 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVAL--------- 101 I P + V++ + + L + ++ + T D Sbjct: 66 EATATILAANPAIRVVVLTTYEDDTSIVGALRAGALGYLTKAATRADIERAVKAAAAGQA 125 Query: 102 ------------------------INGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDIL 137 + + PE+A LS ++ VL IA + +I Sbjct: 126 ILDPAVQRQLLAAATGANTGTGNGTPTAPAAEPESADDLSPREADVLRLIAAGHSNREIA 185 Query: 138 EKLKISLKTFYCHKHNIMMILNLKRINELVRHQHIDY 174 +KL + T H + I + + V++ Sbjct: 186 KKLFVGEATVKSHINRIFTKTGCRDRAQAVQYAFTHG 222 >UniRef50_C7PDL7 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDL7_CHIPD Length = 210 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ----NEEEIDVML--HQNAFVIIDTLMNNVFHS 55 LI+ +F + ++ + + + N EI +L +++D M + Sbjct: 4 VLIVDDHHLFAEGVASLFKPEDGIAVVKHTTNGNEIPDILAGSDIDVILLDIDMPILNGI 63 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + ++ ++ + +K L K +V + + + V IN Sbjct: 64 ACMELLKHKGYDKPVVMLTMHQSMRQVKDALEKGAQGYVLKDASKAELVQAINNASERKN 123 Query: 104 --------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 LS ++ +++ C+A M T+ I L IS T Sbjct: 124 YFHPKINDQVFDYFRGKSVGKSGLQELSEREKEIIKCLAEGMNTKAISSSLYISEHTVKT 183 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H+ NIM LN+K EL+R ++ Sbjct: 184 HRRNIMHKLNVKTSAELIRLAIDKGII 210 >UniRef50_C1F244 Two-component system response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F244_ACIC5 Length = 214 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 73/209 (34%), Gaps = 35/209 (16%) Query: 3 LIITRDTMFFTAMKNILSKGNVV----HIQNEEEIDV-MLHQNAFVIIDTLMNNVFHSNF 57 LI + +++ + + + E D +L++ V+ID M + Sbjct: 4 LIADDHMLLRAGVRDAIERNGGIVCDEATTGREAFDKAILYKPTLVVIDVTMPELNGIEA 63 Query: 58 LTQI-ERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC----- 107 +I L V VII + ++ + ++ +T T + I Sbjct: 64 TRRILNALPTVKVIILTQHQSNELVRSAVEAGARGYLLKTDTGQILLQAIQSVMAGGTFF 123 Query: 108 --------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 L+ ++ +VL +A +T++ L S T Sbjct: 124 SPVITDVVLQSLARSVHLTGPGIVYKERLTPREGEVLQLLAEGKSTKEAASVLGTSTFTV 183 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 + N+M L L+ +++LVR+ ++++ Sbjct: 184 ETQRKNVMRKLRLRNVSDLVRYAVRNHMI 212 >UniRef50_A1BJU3 Two component transcriptional regulator, LuxR family n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BJU3_CHLPD Length = 203 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVM-LHQNAFVIIDTLMNNVFHS 55 +I +F + +L+ + + E E ++++ + ++D M Sbjct: 4 IIIADDHKIFRQGLSRLLADDDRFKLLGEASNGKEALNLIWKEKPQVAVLDLSMPRPDGL 63 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFV---------AL 101 ++ I II + + ++R L +V + + L Sbjct: 64 EVVSSIRAAHSNTRCIILTMKDDIETVRRALESGVYGYVLKEAAYEEIAEAIVKVADNKL 123 Query: 102 INGSYCSVPEAAVS-----LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 G + P S L+ ++ +VL C+ +T+ I +L IS +T H+ +IM Sbjct: 124 YLGRFQDNPNLYASCCEGQLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQHIME 183 Query: 157 ILNLKRINELVRHQHIDYLV 176 LN++ L + L+ Sbjct: 184 KLNIRTATGLAGYAREHGLI 203 >UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLG5_9BACT Length = 225 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 +II T + +S I E + + VI+D + + + Sbjct: 17 VVIIEDQTAIREMVSEFISMLPGYEIVGSFGTGEEGLQGCIKLKPEIVILDVGLPELSGT 76 Query: 56 NFLTQIERLKP-VHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDF------------ 98 L + P V V++FS NI+ L +V + +F Sbjct: 77 EVLRGLTLHVPGVKVLVFSGRASSANIRELLSAGAQGYVDKMDGFDEFKKALDIISGGGT 136 Query: 99 -----VALINGSYCSVPEAAVS---LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 +A + S P+AA S LS ++ Q+L +A +T++I +L IS++T H Sbjct: 137 FIGPKMASVMRSLILNPDAASSEIPLSDREKQILQLVAESFSTKEIASRLNISVRTVDNH 196 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + NIM LNL + L R+ L+ Sbjct: 197 RTNIMRKLNLHDVAALTRYAIKHELI 222 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ + +K+ L + + + I E ++ L + +++D M N+ Sbjct: 4 LILADDHRLMQDGLKSRLEREDNLDIIACVGTGTEALEATLELKPDVLLLDINMPNLNGI 63 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 L Q+ + +I + + R + +V + + + V IN Sbjct: 64 EVLEQLAKTSSATSVIMLSMHDSRDYVVRSVKAGAKGYVLKDVGSEELVMAINQVAQGRS 123 Query: 108 ----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 + E +LS+++ VL IAN ++I + L IS++T H+ Sbjct: 124 YLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHR 183 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 I L LV+ LV Sbjct: 184 LRIKKKLGATSTAALVKLALQKGLV 208 >UniRef50_B4D808 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D808_9BACT Length = 212 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 74/199 (37%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L++ + + + +L++ + + E + H+ ++D M Sbjct: 9 LLLVDDHFVVRSGLAMLLAQQDDFAVVAEADDAEQAVAHYRQHRPDVTLMDVRMPGASGI 68 Query: 56 NFLTQIERLKPV-HVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 L +I P VI+ + +++ R L V ++ +++ + A + + Sbjct: 69 EALQRIRGEFPDARVIMLTTYDLDEDVFRALEAGAVGYLLKSVRHAELFAAVRKVHAGER 128 Query: 109 -VPEAAVS----------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 VP++ + LS ++ + L +A + +I L ++ +T H I++ Sbjct: 129 CVPQSLETRCKNGALRSRLSPREVETLDLLARGFSNREIGSALGVTERTAKAHVQAILVK 188 Query: 158 LNLKRINELVRHQHIDYLV 176 L E V + L+ Sbjct: 189 LEAADRAEAVDAAYKRGLL 207 >UniRef50_D1CF52 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=D1CF52_THET1 Length = 1648 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 79/205 (38%), Gaps = 31/205 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI----QNEEEIDVMLHQ-NAFVIIDTLMNNVFHSN 56 +I +F +K++L + +E ++++ + V++D M + + Sbjct: 1441 VVIADDHALFRDGIKSLLESEGFQMVGEASNGQEAVELVHNLSPDLVLMDLSMPVMGGLD 1500 Query: 57 FLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP- 110 + I KP V VI+ + ++ + F+P+ + +F L+ P Sbjct: 1501 AIRLISADKPSVKVIVLTASEEDKDLFEAIKAGAQGFIPKNLESEEFFQLLRNVIRGEPA 1560 Query: 111 -------------------EAAVSLSRKQHQVLSCIANQMT-TEDILEKLKISLKTFYCH 150 + L+ ++ ++L + N +T T+D+ +L +S T H Sbjct: 1561 ITPRLAGKLIDEFSRPVRSSSLQMLTDREQEILQLLVNGVTSTKDLSRQLGVSEHTVKYH 1620 Query: 151 KHNIMMILNLKRINELVRHQHIDYL 175 NI+ L+L+ ++V L Sbjct: 1621 LRNILSKLHLQSRAQVVAWAVQHGL 1645 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 132 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 +++ + + + +L + + + E E +Q +++D M + Sbjct: 7 VMLVDDHAVVRSGLCRLLEQNTDISVVGEAESGEQAYQTYPEISPDVLVMDMSMPGMGGL 66 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + +I VI+FS + L + +V ++ D V + Sbjct: 67 EAVRRILNRWSGAKVIMFSMHENATYAIQSLTAGAMGYVAKSGHAEDLVKAVREVKSGKS 126 Query: 104 ------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 S L+ ++ +V +A +DI +L I KT ++ Sbjct: 127 FLSSDMAHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKTVANYQ 186 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 ++ L + +LVR ++ Sbjct: 187 TSLKQKLGIHSPVDLVRLAMKYGVI 211 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 34/204 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ M I+ + + E M + +ID M Sbjct: 25 VLLVDDHPAIRRGMAAIIDEEPDLTTCGEASTAPMALEAMRRLNPDIAVIDISMPGTNGV 84 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITI--------------- 95 + + +P I+ + + R L +V + + Sbjct: 85 ELIKLMLAEQPGLQILMLSMHDESVYALRALRAGAKGYVMKGEALECVLTGLRKVGEGEI 144 Query: 96 --------IDFVALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 I + V LS ++ +VL + + +I E+L +S+KT Sbjct: 145 YVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLGRGFGSREIAEELSLSVKTV 204 Query: 148 YCHKHNIMMILNLKRINELVRHQH 171 H+ +I L K E+VR Sbjct: 205 ETHRAHIKEKLGFKEAGEMVRFAI 228 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 76/211 (36%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ + +K +L+ + + EE ID + V++D M + Sbjct: 7 IVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAIDRVDDLHPDLVLLDLTMPKLNGV 66 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALI-------- 102 + + ++ + I+ + +K L +V + ++ ++ I Sbjct: 67 DCIEELLKKHADLKILVLTMHDDEEYLKAVLQVGAKGYVLKKAADVELLSAIRTVARGEM 126 Query: 103 -----------------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 + LS ++ +VL +A T +DI + L +S+K Sbjct: 127 FIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGHTNQDIADLLHVSVK 186 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T +K +M L + + ELVR+ + ++ Sbjct: 187 TVETYKARVMEKLEMHKRAELVRYAMENGII 217 >UniRef50_A1TUY1 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=A1TUY1_ACIAC Length = 219 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 25/197 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 ++ + ++ L V I E V++D M +V Sbjct: 15 LFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPGIVLMDVGMKDVSGL 74 Query: 56 N-FLTQIERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVA---------- 100 + + V++ S + ++R L +V + + VA Sbjct: 75 DFAARLLAGDGAPRVLMLSMYDNPEYVQRALQVGASGYVLKDAPASELVAALEAVAAGGT 134 Query: 101 ----LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 ++ L+ ++ ++L+ + +++ I L +S++T H+ NI Sbjct: 135 FLSPAVSQRLFRNQAPKPLLTPRESEILAALGRGASSKQIACDLGLSVRTVEAHRQNIRR 194 Query: 157 ILNLKRINELVRHQHID 173 L L + EL+R+ Sbjct: 195 RLELGSLAELIRYAVEH 211 >UniRef50_D1VBH1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=D1VBH1_9ACTO Length = 248 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 39/214 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVM------LHQNAFVIIDTLMNNVFHS 55 LI + + + ++ + + E V + V++D M + Sbjct: 28 VLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVRESRRLRPDVVLMDIRMPVMNGL 87 Query: 56 NFLTQIER---LKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC- 107 I +++ + F + L F+ + + +A I Sbjct: 88 EATRLIAADAVRPGPGILVVTTFDDDEYVFEALRAGAAGFILKDTQPENLLAAIRTVAAG 147 Query: 108 -------------------SVPEA------AVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 P A A +L+ ++ VL+ IAN + +I + L + Sbjct: 148 DALLAPGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSNAEIAQALYV 207 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 S+ T H +++ L + +LV + LV Sbjct: 208 SVSTVKTHVGHLLAKLAARDRAQLVIAAYESGLV 241 >UniRef50_D1C6S1 Two component transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S1_SPHTD Length = 223 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 71/210 (33%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ +F + ++LS + E + V++D + + Sbjct: 6 LLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELVPDVVLMDIDLPGIDGI 65 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALING------ 104 +I+R P V++ + ++ + ++ + I + + + G Sbjct: 66 EATRRIKRQLPEVRVVMLTVYDDHERLFQSIKAGAQGYLIKNIRSAELLDQLRGLARGEA 125 Query: 105 ------------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + E LS ++ +VL +A +++ ++I +L IS T Sbjct: 126 AISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAARLSISEHT 185 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H NI+ L L + + L+ Sbjct: 186 VKNHLKNILAKLQLSSRRQAAAYAVAHGLI 215 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 77/204 (37%), Gaps = 30/204 (14%) Query: 3 LIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLH--QNAFVIIDTLMNNVFHSN 56 ++ + ++ L K + + E E + H + +++D M + Sbjct: 1 MLADDHELVRDGIRARLQKVADLEVVGEATNGREALTLAHDLRPDVLLMDVSMPVMNGLE 60 Query: 57 FLTQIERLKPV-HVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVA----------- 100 TQ+ +L P V+I S P ++ + ++ + I+ + + Sbjct: 61 AATQMRKLLPEIAVLILSVYDNPEYVRGVVQAGARGYILKDISAAEMITAITSVASGGYY 120 Query: 101 --------LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 L+ + E L+ ++ QVL+ IA +++ ++L IS++T H+ Sbjct: 121 FSSAVGPTLVGAGTSAPVEDPYGLTDRERQVLTAIARGQPNKEVAKELGISVRTVESHRL 180 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 N+ + K +L + L+ Sbjct: 181 NLREKVGNKNAAQLYKVAQDLGLL 204 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVMLHQNA-FVIIDTLMNNVFHS 55 LI + +++IL + + E I ++ A +++D M Sbjct: 71 VLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRNGV 130 Query: 56 NFLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + QI+ KP I+ + + R ++ + + V + Sbjct: 131 ELIKQIKEEKPALRILVLTMHAEQQYAVRAFRAGASGYLTKESASSELVGAVTKVASGGV 190 Query: 108 -----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 + LS ++ V IA+ T I ++L +S KT + Sbjct: 191 YVSLAMAERFAQSLNEPAETLPHHRLSDREFDVFRRIASGQTLTQIADELCVSAKTVSTY 250 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 K I+ + + LVR+ L+ Sbjct: 251 KTRILEKMQMPHEAALVRYALRHKLI 276 >UniRef50_Q024Y7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024Y7_SOLUE Length = 225 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 35/204 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 +++ + ++ IL +G+ + E E Q V++D + + Sbjct: 5 IVLVDDHKLVRDGVRMILERGSEFLVVGEAENGADAVQLCKKSSPDIVLMDIGLPGMNGI 64 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALIN-----GS 105 T++ R P V VII S ++ + + FV + + + + + GS Sbjct: 65 EATTELLRHCPSVKVIILSMYDDENSVVSAIRSGARAFVLKKASSNELLDALRTVARGGS 124 Query: 106 YCSVP-------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 Y S SLS ++ QVL +A T++DI L + L+T Sbjct: 125 YLSSQVSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLDLGLQT 184 Query: 147 FYCHKHNIMMILNLKRINELVRHQ 170 ++ +M L + + L + Sbjct: 185 VRSYRKTMMKKLGVNNVAGLTQLA 208 >UniRef50_A8LG56 Two component transcriptional regulator, LuxR family n=4 Tax=Actinomycetales RepID=A8LG56_FRASN Length = 244 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 L++ + + ++ IL G + + E + + VI+D M V Sbjct: 31 VLLVDDEELVRVGLRVILESGGEIDVVGEASDGSQVVPLIRENTPDVVIMDIRMPRVDGL 90 Query: 56 NFLTQIER--LKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------ 103 + +I P +++ + F + L F+ + + V + Sbjct: 91 AAIREILADVADPPKILVLTTFELDDYVYEALRSGANGFLLKRARPAEIVQAVRTIVSSE 150 Query: 104 -----------GSYCSVPEAAVS-----LSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 EA + L+ ++ VL I+ ++ +I +L + +T Sbjct: 151 SLLFPEAIRYMAGKRPNREAHETMRRAVLTDREADVLRLISEGLSNNEIANRLYLGAQTV 210 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H +++ L + + V + V Sbjct: 211 KSHVSSVLAKLGARDRTQAVIIAYESGFV 239 >UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Z2_9FIRM Length = 209 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 78/208 (37%), Gaps = 34/208 (16%) Query: 3 LIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQN-AFVIIDTLMNNVFHSN 56 +I+ + +K +L + + EE + ++ Q VI+D M + Sbjct: 1 MIVDDHLLIRAGIKLLLKNTSAYTVTAEAESGEEALRLLAQQPIDLVIMDISMPGMGGLA 60 Query: 57 FLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALI--------- 102 + +I P V +++ S I + + + ++P+T + + Sbjct: 61 CIREIRAHYPAVKILVLSMHEDEEYIYKAMQYGAMGYLPKTSADNELFDALQVLSQGRRY 120 Query: 103 --------------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 + + + L+ ++ +V + + T +I E+L +S+KT Sbjct: 121 LSPNAQQSLMDIMFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKTVD 180 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 HK +I L+ R +ELV + L+ Sbjct: 181 THKKHIYEKLHCSRRSELVTLALRNGLL 208 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 131 bits (331), Expect = 8e-30, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMN-NVFH 54 LI + +A+K +++ + + + + + ++ V++D M Sbjct: 3 LLIADDHAVVRSALKFMINAQKDMEVIGDAADGTEAFLFIESNRPDIVLMDLSMPPGENG 62 Query: 55 SNFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTIT---IIDFVALINGSY 106 +I P +I + I + L ++ + + ++D + + G Sbjct: 63 LLTTKRITEAFPETKVILLTMHDEEAYITQALQAGAQGYIMKNSSEELLLDAIRSVMGGQ 122 Query: 107 C--------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + LS+++ ++L IA ++I E+L IS KT Sbjct: 123 IIIDPVFNYSSKQIEQLKRADASENIIERLSKREKEILPLIALGYGNKEIAERLFISAKT 182 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 HK +IM L +K+ ++L+R + L+ Sbjct: 183 VEVHKSHIMKKLEMKKFSDLLRFCVKEQLI 212 >UniRef50_Q2W107 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Magnetospirillum RepID=Q2W107_MAGSA Length = 214 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 +++ MF A++ L + + I E + L +++D + ++ Sbjct: 5 VMLVDDHRMFREALRAPLEAESDMEIVAEANSGADTLASLDLACPDVLVLDIGLPDLNGI 64 Query: 56 NFLTQ-IERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 I R + ++ S F I+ L +V ++ + V+ I Sbjct: 65 EVARTAIRRHPDLRIVALSGFADRIYIEEMLKAGAHGYVVKSSGADELVSAIRAVAGGSS 124 Query: 107 ------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 +V L +++ +VL +A + + +I L I++ T Sbjct: 125 FLSPEATQVMLRHIQSDADTVAPPPSVLGKREREVLVLLAGGLRSAEIAASLGIAVGTVE 184 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ NI L + R +L+R+ + L+ Sbjct: 185 VHRRNIKQKLGMNRTADLIRYAVHEGLI 212 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 77/201 (38%), Gaps = 27/201 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVV-HI----QNEEEIDVML-HQNAFVIIDTLMNNVFHS 55 LI+ +K LS+ V H+ + ++++ + VI+D + + Sbjct: 29 ILIVDDHPAVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDLDIPRINGL 88 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + + +++ ++P V +++ S + R +V +T + + V + Sbjct: 89 DVIPRLKAIQPGVRILVISGQDQNTFAPRARQAGANGYVSKTQELPEIVRCVESVLAGYS 148 Query: 109 --------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 SLS K+ ++ +A M+ + I E L IS KT HK I Sbjct: 149 VMPDVDGGRADGVDETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRI 208 Query: 155 MMILNLKRINELVRHQHIDYL 175 M L + + +++ ++ Sbjct: 209 MEKLGARSLVDVIDFARRHHI 229 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 26/201 (12%) Query: 2 FLIITRDTMFFTAMKNIL---SKGNVVHIQNEEEIDVML---HQNAFVIIDTLMNNVFHS 55 +++ ++ + +L + +VV E V L + VI+D M + Sbjct: 7 VVLVDDHSLVRRGLAVLLRLDGRHDVVGEAGTGEAAVPLIEAERPDLVILDLNMPGIDGL 66 Query: 56 NFLTQIE-RLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFV----------- 99 L ++ + V++ S + + + L ++ + + Sbjct: 67 ETLRRVRAKGLTTRVLVLSMHDETHLVGQALSAGADGYLLKDSMDDELFFAIESVLRGQR 126 Query: 100 ----ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIM 155 A+ VSL+ ++ +VL IAN +TT + E L IS T H+ N+M Sbjct: 127 YLAAAIDRARLQESRMRPVSLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRANLM 186 Query: 156 MILNLKRINELVRHQHIDYLV 176 LN+ ELVR L+ Sbjct: 187 QKLNVHNQVELVRIAASQGLI 207 >UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Tax=Gammaproteobacteria RepID=UHPA_ECO57 Length = 196 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 20/187 (10%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE------EEIDVMLHQNAFVIIDTLMNNVFHS 55 +I + + +L + + E + I D M ++ Sbjct: 4 VALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGL 63 Query: 56 NFLTQIERLKPVHVIIF--SPFNIKRCLGKVPVTFVPRTITIIDFVALINGSYCS----- 108 L+Q+ + ++ SP +++ L F+ + + + +A ++ Sbjct: 64 ELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLT 123 Query: 109 -------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 L++++ QV +A M ++I +L +S KT + H+ N+M L + Sbjct: 124 PDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVS 183 Query: 162 RINELVR 168 EL R Sbjct: 184 NDVELAR 190 >UniRef50_B3Q5K9 Two-component response regulator protein-nodW mutant supressor protein n=11 Tax=Rhizobiales RepID=B3Q5K9_RHIE6 Length = 213 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 21/191 (10%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ----NAFVIIDTLMNNVFHSN 56 + I+ D A+ +L + + E D + A +I+D + ++ + Sbjct: 7 IVFIVDDDERIREALGELLDSHGMRAVAFESAGDYVKMDKPDVPACLILDIELPDINGLD 66 Query: 57 FLTQIERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCS---- 108 QI ++ + + R + V F+ + + D +A I+ + Sbjct: 67 LQGQIADGDHPPIVFITGHGDIPSSVRAIKSGAVDFLTKPFSDADLMAAIHAAIAQDRRK 126 Query: 109 ---------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILN 159 + + L+ ++ +VL + + + + +L IS T H+ N+M + Sbjct: 127 RGERAELDMLKRHYLDLTPREREVLPLVVSGLLNKQAAAELGISEVTLQIHRRNVMQKMA 186 Query: 160 LKRINELVRHQ 170 + +LVR Sbjct: 187 AASLADLVRIA 197 >UniRef50_A9B5L0 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5L0_HERA2 Length = 207 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 57/203 (28%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L++ + + +L + Q V++D + + Sbjct: 4 VLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLSGI 63 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALING------ 104 + P ++ + ++ L ++ + + + I Sbjct: 64 EVMRHTRASAPNTRFLVLTTYDTDEYIGPALNAGAAGYLLKDASPEEVFRAIRSIYEGGA 123 Query: 105 -----------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 + A LS+++ VL + + + I L IS T H + Sbjct: 124 ALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHVSH 183 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 I L+++ E V LV Sbjct: 184 IFSKLDVRSRAEAVAVALQRGLV 206 >UniRef50_Q2T8I1 DNA-binding response regulator, LuxR family n=28 Tax=Bacteria RepID=Q2T8I1_BURTA Length = 250 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 22/190 (11%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH----QNAFVIIDTLMNNVFHSN 56 + I+ D+ T++ +L + D + H A +++D M + Sbjct: 47 VVYIVDDDSGMRTSLSWLLESVGAKSLGFASAADFLAHFDPDVPACLVLDVRMPESSGFD 106 Query: 57 FLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSYCSVPE 111 ++ IIF + R L + FV + + + + + Sbjct: 107 VQAELNARGATLPIIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRAMKLAMQ 166 Query: 112 AAVS-------------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 + L+ ++ +VL + + ++ I L IS+KT H+ +I L Sbjct: 167 RHAADCRRRELRRRIDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKL 226 Query: 159 NLKRINELVR 168 I LVR Sbjct: 227 GATSIAALVR 236 >UniRef50_C4XNR8 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XNR8_DESMR Length = 220 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 68/209 (32%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 ++ T+ T ++ ++ + E L +++D M V Sbjct: 6 IILADDHTVLRTGLRLLIDNQPDFTVVGEAADGEALLALVERVPAEVLVLDLSMPRVSGL 65 Query: 56 NFLTQIERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGS------ 105 + +++ I+ + +K + + ++ + + I Sbjct: 66 ECIKELKSRGQEIKILVLTMHGREYVKEAMAAGALGYIEKQALDSELFVAIRTVASGRRY 125 Query: 106 ------------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + P+ L+ ++ +VL + T I L +S+KT Sbjct: 126 MSPDNAEVLLDQLLSPTPQAASPDPYAVLTAREREVLKLLVRGHTLTQIAGLLHLSVKTI 185 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 HK ++M LNL ++LV + L+ Sbjct: 186 DTHKTHVMEKLNLTHKSQLVDYALRHGLL 214 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 81/209 (38%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 +I T+ +K++L + + E L Q V++D M Sbjct: 7 IIIADDHTLIRDGIKSLLQSVDEFEVVGEATDGDELIQFIDTLDPEIVVLDITMPKKSGI 66 Query: 56 NFLTQIERLKP-VHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 +T++++ V I+ S P + + + ++++ + + + + Sbjct: 67 EVITEVKKYNNRVKFIVLSMHDNPEYVLKSVQSGALSYLLKNTDHEEIIKAVKAVSAGQK 126 Query: 108 --------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + A +L++++ +VL ++ ++T+ I +KL IS++T Sbjct: 127 YFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVSMGLSTKLIADKLFISVRTV 186 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N+M L++ EL++ ++ Sbjct: 187 ETHRINLMKKLDVHNSAELIKKAMDLNII 215 >UniRef50_A4XCA4 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XCA4_SALTO Length = 235 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 36/210 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L++ + +A++ ++++ + + I E E + V++D M + Sbjct: 5 VLVVDDQPLVRSALRMVVAEVDDMVIAGEAETGEEAVRLTRELKPDVVLMDLRMPGMGGI 64 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALI----NGSY 106 QI RL P V++ + F ++ L F+ + +++ D + + +G+ Sbjct: 65 EATGQIVRLSPETRVLVLTTFDEDDHVFGALQAGAAGFLIKNMSLDDILDAVRTVAHGNG 124 Query: 107 CSVPEAAVSL---------------------SRKQHQVLSCIANQMTTEDILEKLKISLK 145 P L + ++ +VL+ + ++ +I ++L++S Sbjct: 125 LLAPSVTRRLIKHVVDTRTAPTVPRRPLSGITEREREVLTLVGRGLSNSEIADELRLSHA 184 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYL 175 T + ++ L + LV + L Sbjct: 185 TVKTYITRLLSKLGARDRVHLVIAAYEAGL 214 >UniRef50_C6X598 Two-component response regulator n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X598_FLAB3 Length = 226 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 36/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 LI+ + +K++L + + E + H+ +++D M + Sbjct: 12 ILIVDDHQLMIEGLKSLLEDEDSISFVAGATTMKETLDFLAEHEIDVILMDVNMPDSSGI 71 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 ++ L P VI + I + + +V + + + + + + Sbjct: 72 EITKKVRALYPHPKVIALTMHEDISIISKMIKAGASGYVLKRTNMHEVIDALKTVHQNGR 131 Query: 108 ----------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 + + LS ++ +VL IA + + E I E+L IS + Sbjct: 132 YLSTSVQNVIMDNLMLPEDLMDAKDDNKPVLSGRELEVLKLIAKEFSNEQIGEQLFISER 191 Query: 146 TFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 T H+ NI M K I L+++ + +V Sbjct: 192 TVEAHRRNIFMKTKTKSIVGLIKYAITEGIV 222 >UniRef50_C6BTX3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BTX3_DESAD Length = 217 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 34/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ + +++ L + + + E + +++D LM + Sbjct: 7 VLLVDDHDIVRIGVRSFLGSFDDIKVVGEAANGQEAVEMTAELSPDIILMDMLMPVMDGI 66 Query: 56 NFLTQIERLK-PVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + +I K P +I + F + + ++ + T + + I + P Sbjct: 67 QAIREIRDRKLPGRIIALTSFATDDKLFPAIKAGAMGYLLKDSTPDELLEAIRRVHRGEP 126 Query: 111 E-----------------------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 L+ ++ L +A + + I E++ +S T Sbjct: 127 SLAPDIARKVLSELSQPGEDSETPTPDPLTPRELDTLKLVAKGKSNKAIAEEMFVSEATV 186 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYL 175 H +I+ L+L E + + + Sbjct: 187 RTHMTSILSKLHLANRVEATLYALREGI 214 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 75/204 (36%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ-----NEEEIDVMLHQN-AFVIIDTLMNNVFHS 55 L+ + + +LS + EE ++ ++D M ++ Sbjct: 10 ILLADDHRVLRKGLSLLLSSEEDFSVVAEASDGEEALEKAAKTPVDIALLDLSMPHMGGL 69 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALING------ 104 L +++ ++P V V+I + + + CL ++ + + + Sbjct: 70 ECLRRLKAMQPAVRVLILTMHSERQYVCECLRAGANGYLCKDTLDAELFRALRTVAAGGR 129 Query: 105 ------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 PE +LS ++ +VL I + + I +KL +S+KT +K Sbjct: 130 YLGEREAELLIDGALEEPEEPAALSTREREVLELIVHGYSLSTIADKLYLSIKTVSTYKT 189 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 ++ L+ + +ELV + ++ Sbjct: 190 RLLQKLDCTQNSELVDYALRHNIL 213 >UniRef50_A4XNE1 Two component transcriptional regulator, LuxR family n=2 Tax=Pseudomonadaceae RepID=A4XNE1_PSEMY Length = 210 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 71/200 (35%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHS 55 +I + ++ +L + E E D++ +++D + ++ Sbjct: 8 IALIDDHALVREGIRALLEVLPHFQVVGEAGSGAEAFDLLQRTPVDILLMDVGLRDINGL 67 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVA---------- 100 Q+ P + V++ S + + L +V + + VA Sbjct: 68 ELTRQLRERYPAIKVLMLSMYDNQEYVSSSLAVGASGYVLKEAPSREIVAAIEAIAAGGS 127 Query: 101 ----LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 I + L+ ++ +VL +A + + + L+IS++T H+ +I Sbjct: 128 FYSGDIARKLVKPAPSEDELTPREREVLLMLAQGLNNKVMARTLQISVRTVETHRLSIRR 187 Query: 157 ILNLKRINELVRHQHIDYLV 176 L + + +L++H V Sbjct: 188 KLAIDKPADLLKHALAHGWV 207 >UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8B3_9BACT Length = 212 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 25/200 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 ++ + +K L + V + E + ++D M Sbjct: 6 VILADDHPLTRQGLKAYLEREENVALVGEAADGDEAWKLIEELKPDVALLDIRMPGADGI 65 Query: 56 NFLTQIERLK-PVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 +I+ K PV I+ + + + L FV +T + + I Sbjct: 66 TLARRIKENKLPVAAIMLTSYDSQQYVLASLKAGAKGFVLKTTSAGALMKAIQTVATGSL 125 Query: 108 -----------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMM 156 + E +LS ++ +VL C A ++++++ +L IS +T H ++ Sbjct: 126 FLDSEVASVVGAQEELTEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHLASVYD 185 Query: 157 ILNLKRINELVRHQHIDYLV 176 L E + L+ Sbjct: 186 KLGAHNKTEAMLLALKHGLM 205 >UniRef50_B8GUD1 Two component transcriptional regulator, LuxR family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUD1_THISH Length = 227 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 68/208 (32%), Gaps = 34/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ----NEEEIDVMLHQ-NAFVIIDTLMNNVFHSN 56 L+I T+F ++ +L + + + E ID+ +++D M + Sbjct: 5 VLLIDDHTLFREGLQELLKRHGIDTVGAVGDGETGIDLARDLLPDVILLDMRMPAMNGLE 64 Query: 57 FLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFV------------ 99 L ++ + I+ + + CL ++ + + D V Sbjct: 65 VLRRLRQAGLKMPIVMLTTSTEEQDLVECLRNGAQGYLLKEMEPGDLVDALEEILQGKTV 124 Query: 100 ----------ALINGSYCSV--PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 ++ G S P L+ ++ ++L+ +A + + I L IS T Sbjct: 125 VAPDLAQLLVRVVQGKSSSANEPSPFDELTPREGEILALLAEGQSNKVIARNLGISDGTV 184 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYL 175 H I+ L + E L Sbjct: 185 KLHVKAILRKLGVHSRVEAAVLAVQQGL 212 >UniRef50_B0C756 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C756_ACAM1 Length = 224 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 33/202 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLH------QNAFVIIDTLMNNVFHS 55 L++ + + +K I + I E Q +++D M + Sbjct: 10 VLLVDDEDIVRYGLKAIAQGTPEIEIVGEAGSGKAAIAQAKTLQPDVILMDINMPQMDGV 69 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 +I R++P V+I + + + + V ++ + DF+ I ++ Sbjct: 70 TATQEISRIQPHAKVLILTTHDEAEYLVEAMQQGAVGYLLKNTPPEDFIQSIQQAHKGYL 129 Query: 107 ------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 EA ++ ++ VL +A + +I E L I+ KT Sbjct: 130 QLGPGLGQKLCQLLKTPVRPQIEAFEGITPREQDVLKLVATGASNREISETLHITEKTVK 189 Query: 149 CHKHNIMMILNLKRINELVRHQ 170 H +I+ + ++ +L Sbjct: 190 NHVSSILSRVGVQSRTQLAIWA 211 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 33/202 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 +I + +K IL + + + EE + + ++D M Sbjct: 7 VVIADDHALVREGLKTILKSQSGISVLGMAENGEEAVRLCRRLNPDVALMDLSMPIKSGV 66 Query: 56 NFLTQIERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALI--------- 102 + ++ + + P +I L +V +T + + V I Sbjct: 67 QAIQELSGEGKTKFLALTAHVEPDHIYSALDAGASGYVLKTSSSKELVMAIETVMQGKVY 126 Query: 103 --------------NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 + ++ SL+ ++ +VL + +I + L IS+KT Sbjct: 127 LAPDISAEVAKGFLQRDRSNSCDSLESLTEREREVLKQVLAGYKNREIADLLVISVKTVE 186 Query: 149 CHKHNIMMILNLKRINELVRHQ 170 H+ N M L L+ EL + Sbjct: 187 KHRSNFMKKLGLRSKAELKAYS 208 >UniRef50_A3TJD7 Two-component response regulator n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJD7_9MICO Length = 207 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE------IDVMLHQNAFVIIDTLMNNVFHS 55 ++ + ++ +L + + E + + V++D M + Sbjct: 4 VYLVDDHQLVRAGVRTLLESDPGLSVVGEARDGQEAVAGIDAAASDVVLMDLSMPVMDGV 63 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGS----- 105 I P V++ + F +K L + +V + D +A ++ + Sbjct: 64 EATRAILSTHPDTRVLVLTSFSDRERVKEVLAAGAIGYVLKDAEPADLLAAVHAAARGEV 123 Query: 106 ------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 P A LS ++ QVL +A + + + L I+ +T H Sbjct: 124 PIDPRVAGALLPSAGGPSVADRLSPRETQVLRLVAQGLANKQVARALGITERTVKAHLGR 183 Query: 154 IMMILNLKRINELVRHQ 170 + + + Sbjct: 184 VFREIGVLDRTSAALWA 200 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVV---------HIQNEEEIDVMLHQNAFVIIDTLMNNV 52 L++ + ++ +L + V H E ++ + V++D M + Sbjct: 4 VLLVDDHELVRMGIRGLLDERAAVTGIQVVGEAHSGEEALVEAKRLKPDVVLMDINMPGI 63 Query: 53 FHSNFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC 107 +I +P V V++ + + + L ++ + I + +A I G+ Sbjct: 64 GGLVATRRIVEAQPSVKVLVLTAMDEGPVPRWVLEAGASGYLTKGCRIEEMIAAIQGAMQ 123 Query: 108 S--------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 LS ++ Q+L I T + I L IS KT Sbjct: 124 GERHISPAVAQRLALGGLAKGQANPFDELSGRERQILLMILQGQTPQAIATALNISPKTV 183 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 +K +M L + +LV L+ Sbjct: 184 STYKCRVMGKLGISNDMQLVTLAAQHGLI 212 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNA----FVIIDTLMNNVFHSNF 57 LII + ++ L ++ + + ++ M V++D M + Sbjct: 21 VLIIDDHALLGESLARFLGSNDMQAVWCGDLVEAMQSIRDRSWSVVLLDLSMPRGNGLDL 80 Query: 58 LTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSY------ 106 L +I+ + P ++ + + R L ++ + + V I Sbjct: 81 LKRIKLMHPDLPVLILSMHPEQQFALRALRGGAAGYLTKGCSPDVLVEAIQKVVHGGRYL 140 Query: 107 ---------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 + E LS ++ QV + + + ++L IS KT HK Sbjct: 141 TPGVAEQLANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHK 200 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 +M L L +LVR+ +V Sbjct: 201 TRLMHKLALDNDADLVRYAMHQGIV 225 >UniRef50_B7GMR0 DNA-binding response regulator, NarL family (REC-HTH domains) n=4 Tax=Bacillaceae RepID=B7GMR0_ANOFW Length = 206 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 21/195 (10%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN-------EEEIDVMLHQNAFVIIDTLMNNVFH 54 L++ + +K +L + +H+ +E L+ +++D + + Sbjct: 11 VLLVDDHALMIEGVKELLGREEDMHVVGTVLHLSQLQESIETLN-PHVIVMDIRLKDGNG 69 Query: 55 SNFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV 109 + +++ L P V+I S +N I+ FV + +I+ I G+Y Sbjct: 70 LEWTKKMKMLYPDCKVVILSGYNYSEYIRAAKHAGASAFVVKEESILQLANAIRGAYEGF 129 Query: 110 P--------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLK 161 E +SL++ + +L IA T E+I L IS +T H I+ L + Sbjct: 130 AFFPNDVDEEENISLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTIIKKLRVD 189 Query: 162 RINELVRHQHIDYLV 176 V + ++ Sbjct: 190 SRVGAVVKAIKEGII 204 >UniRef50_C5S6K7 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6K7_CHRVI Length = 209 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 64/193 (33%), Gaps = 22/193 (11%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN-EEEIDVMLHQNA---FVIIDTLMNNVFHSNF 57 ++ D ++ IL + +++D M ++ + Sbjct: 7 VFLVDDDQGMRDSLTLILELAGYPVRSFPTPAAFLAAFSPDERGCLVLDQRMPDMTGLDL 66 Query: 58 LTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALINGSYCSVPEA 112 +++ + IIF R + + F+ + + + I ++ Sbjct: 67 QSELLERGALLPIIFLSAFGDVPTTVRAIQGGAIDFLEKPASTEQLLQRIEDAFAEDRRR 126 Query: 113 AV-------------SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILN 159 L+ ++H+VL+ +T +DI +L IS +T H+ +M + Sbjct: 127 REEAATEYDIRERFRQLTPREHEVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMG 186 Query: 160 LKRINELVRHQHI 172 + EL R + Sbjct: 187 AGNLAELCRMSVV 199 >UniRef50_Q0B0G6 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0G6_SYNWW Length = 213 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVML-HQNAFVIIDTLMNNVFHS 55 +I + ++ +L + + + +E I++ + +I+D M Sbjct: 6 VVIADDHVLVREGLRKLLELDSNIKVIDEVGDGQGAINIARKEKPDIIIMDVNMPGTDGI 65 Query: 56 NFLTQIER-LKPVHVIIFSPFN---IKRCLGKVPVTFVPRTITIIDFVALING------- 104 I+R L V +I + + + + ++ + + + V I+ Sbjct: 66 VATRVIKRELPSVRIIALTVYEGEEVVDMVKAGASAYILKDVAGSELVDTIHRVMNGEVV 125 Query: 105 -------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 ++ + L++++ VL+ + T +++ E + IS KT H Sbjct: 126 IYPRVANRLVRELRQSENRKSEIRLTKREKDVLTLLVKGNTNKEMAEVMFISEKTVKNHL 185 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 +I L +K + + +V Sbjct: 186 TSIFRKLGVKDRTHAAIYALKNRIV 210 >UniRef50_UPI0001AF0F26 two-component system response regulator n=2 Tax=Streptomyces filamentosus RepID=UPI0001AF0F26 Length = 234 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 70/198 (35%), Gaps = 33/198 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ-----NEEEIDVMLHQNAFVIIDTLMNNVFHSN 56 L++ D + ++ IL + + + E H+ ++D M Sbjct: 8 VLVVDDDALVRDGLRRILESADDIRVPAVCGPGEALALARRHRPDVALVDLHMPGTDGIE 67 Query: 57 FLTQIER-LKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFV-----------A 100 L + +P V + + F +++R L F+ + + + + A Sbjct: 68 VLRGLRASARPPRVAVLTGFGEDEHVRRALRAGAAGFLLKDSAVDELIPGVRLLAAGGSA 127 Query: 101 LINGSYCSVPEAAVS------------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 L S+P+ A L+ ++ +VL + + M+ E+I +L +S T Sbjct: 128 LSERVVRSLPDGAGKEAAPADPPGARLLTAREREVLELLPSGMSNEEIGRRLFLSRTTVR 187 Query: 149 CHKHNIMMILNLKRINEL 166 H +++ L + Sbjct: 188 DHVSSLLAKLGAANRVQA 205 >UniRef50_B1T1G9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T1G9_9BURK Length = 204 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 76/202 (37%), Gaps = 27/202 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-EEIDVMLH-----QNAFVIIDTLMNNVFHS 55 +I+ A+ +IL + + + + L + +I+D ++ + Sbjct: 3 VVIVDDHPTVQLALTSILERNVNLKVVGTASDGGEGLRLCRELKPDLLIVDIDLDGMDGI 62 Query: 56 NFLTQIERLKP-VHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + + ++ V +++FS ++ + RC +V ++ + ++ N Sbjct: 63 DLIQRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNKSEDVTHVLSAANAVLAGFH 122 Query: 109 --------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 A LS ++ VL +A ++ ++I + L +S KT HK NI Sbjct: 123 CFPLDINAMASGSGPHAAFAMLSERELTVLRYLAKGLSNKEIGDSLSLSNKTISTHKANI 182 Query: 155 MMILNLKRINELVRHQHIDYLV 176 + L + +L +L+ Sbjct: 183 LAKLGFTNVVDLAAFAKAHHLI 204 >UniRef50_C0GJ72 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ72_9FIRM Length = 212 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 71/202 (35%), Gaps = 30/202 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 +++ ++ ++ +L + + + E E +++D + + Sbjct: 7 VMLVDDHSVVRQGLRLLLELDDTMEVCGEAETLTGAVAVCAEVAPDVILLDFKLPDGDGI 66 Query: 56 NFLTQIERLKP-VHVIIFSPFNIKRC----LGKVPVTFVPRTITIIDFVALINGSY---- 106 ++R P V +II + + + ++ + + + + I + Sbjct: 67 IGCGNLKRQFPQVKIIILTAYADDHLVTETIKAGADGYLLKNVESEELINTIQAVHKGQS 126 Query: 107 ---------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 P+ +L+ K+ Q+L I+ ++I E +KIS KT + Sbjct: 127 VLDPSVTEILFDNIKSQQPKKEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYV 186 Query: 152 HNIMMILNLKRINELVRHQHID 173 NI+ LN+ E + + Sbjct: 187 SNILQKLNVSNRTEAASYWMRN 208 >UniRef50_Q67QY5 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67QY5_SYMTH Length = 218 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 78/208 (37%), Gaps = 34/208 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI----QNEEEIDVMLH-QNAFVIIDTLMNNVFHSN 56 LI+ M + ++LS ++ I +E ++++ + V++D M + Sbjct: 3 VLIVDDHLMLRKGVLSVLSNTDLEVIGEASNGQEALELVPKLKPDLVLMDINMPVLDGVE 62 Query: 57 FLTQIERLKPV-HVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVA----------- 100 +++++ P V+I + I + ++ + + + V+ Sbjct: 63 ATRKLKQMYPDLKVVILTVSEIDKDLFEAIKAGADGYLLKNLGPEELVSSLRAAISGEAP 122 Query: 101 -------------LINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + + + LS ++ +VL + +T ++I KL ++ T Sbjct: 123 ISSVMAAKMLKEFRQPRANTTGKQPGQQLSPREIEVLRLASTGLTYKEIAAKLYVAESTV 182 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYL 175 H +I+ L+L+ +E V + L Sbjct: 183 KNHMRHILEKLHLRNRSEAVGYAIRTGL 210 >UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR family n=4 Tax=Bacteria RepID=D1C9Z8_SPHTD Length = 212 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-EIDVMLHQ-----NAFVIIDTLMNNVFHS 55 L++ + + IL + + E + D + Q V++D M Sbjct: 4 ILVVDDHPVVREGLVAILEAQEDLTVVGEAGDGDQAVQQYRDLKPDVVLMDLAMPGTDGV 63 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + +I+R+ P V++ + ++ I + + ++ + D + Sbjct: 64 QAIQEIKRIDPNARVVVLTAYDTDERILQAVQAGASGYLLKGAPREDIFRAVRVVYRGGS 123 Query: 104 --------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 G L+ ++ VL+ +A + ++I +L I+ +T Sbjct: 124 LLEPVVAGKLLNRMGDLLRGEPVEEELTARELDVLTLMARGLRNKEIAYELSITERTVKF 183 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H + I L++ E V LV Sbjct: 184 HANAIYRKLDVSGRTEAVSKAIQRGLV 210 >UniRef50_C0YQJ8 Transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YQJ8_9FLAO Length = 229 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 79/211 (37%), Gaps = 37/211 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE--------EEIDVMLHQNAFVIIDTLMNNVF 53 I+ + +F + ++ + + + NE +E+ + +++D M + Sbjct: 8 VAIVDDEALFRQGISLLIQREKDIELVNEFSNGKELLDELMTLQELPDIILMDLNMPEIN 67 Query: 54 HSNFLTQIE-RLKPVHVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALINGSY-- 106 QI + + +I + +N K + +F+ + + + + I Y Sbjct: 68 GVEATKQIHVKYPQIKIIALTSYNTKAFIVNMIQSGACSFLKKNSSPAELLTAIREVYSK 127 Query: 107 ---------------CSVPEAAVS-------LSRKQHQVLSCIANQMTTEDILEKLKISL 144 + P+ VS +S+++ +VL I Q T +I + L IS Sbjct: 128 GFFYNNEVMEALHQNLTEPKKKVSSIFDANHISKREKEVLELICKQYNTAEIADLLFISS 187 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 +T H++++++ K LV + + Sbjct: 188 RTVEGHRNSLLLKTGAKNTAGLVVYAIESKI 218 >UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteria RepID=Q8YV43_ANASP Length = 209 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 70/199 (35%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 LI +F + I+++ + + + E + HQ ++D M V Sbjct: 9 VLIADDHAIFRQGLATIINRDPEMQVVAQAENGEQVIALFEEHQPDVTLMDLRMPEVEGV 68 Query: 56 NFLTQI-ERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 ++ I K +I+ + ++ I R L ++ + + + I + Sbjct: 69 AAISAICATAKSARIIVLTTYDSDEDIYRGLQAGAKGYLLKETEPDELLNAIRTVHRGHK 128 Query: 111 -------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 + LS ++ +VL +A M+ DI + L I T H + I+ Sbjct: 129 YIPPDVGAKLVQRLSNPELSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNK 188 Query: 158 LNLKRINELVRHQHIDYLV 176 L++ + V +V Sbjct: 189 LDVSDRTQAVIVAVKRGIV 207 >UniRef50_Q842F8 Response regulator, two-component system n=8 Tax=Rhodococcus RepID=Q842F8_RHOSR Length = 209 Score = 129 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 79/205 (38%), Gaps = 30/205 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 ++ + + ++ IL H+ +L Q V++D +++ Sbjct: 4 VVVCDDHGIIRSGIRRILETTTDFHLVASAPTGELLLQAVRDFAPELVVLDIRLSDCNGL 63 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + L QI + P V++ S + + + + ++ + + V+++ Sbjct: 64 DLLEQISAISPETRVVMLSMYGAKGYVDKAKTRGARGYITKECLDEELVSVLYTVMKDEG 123 Query: 104 ------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 GS + SLS ++ +V+ IA+ +T +I E+L +S +T H+ Sbjct: 124 FVSFRADTTEPGGSESLLEANIDSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHR 183 Query: 152 HNIMMILNLKRINELVRHQHIDYLV 176 +I L ++ EL R L+ Sbjct: 184 ASIQRKLLIRTRAELARVARDAGLL 208 >UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersinia RepID=A4TJY3_YERPP Length = 210 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVH-----IQNEEEIDVMLHQN-AFVIIDTLMNNVFHS 55 +I+ A+ +LS+ + E ++ + + VIID + N Sbjct: 5 VMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVDLVIIDIELPNFDGF 64 Query: 56 NFLTQIERL-KPVHVIIFSPFNIK----RCLGKVPVTFVPRTITIIDFV---ALINGSYC 107 + L ++++ + S N + R L F+ + I + + + Y Sbjct: 65 SLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDISEILFAAQNVLRGYS 124 Query: 108 SVPEAAVS-----------------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 P ++ LS ++ VL + N ++ + I +++ IS KT + Sbjct: 125 FFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQIADEMFISNKTVSTY 184 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 K I+ L L + EL + H LV Sbjct: 185 KTRILTKLGLSSVIELADYAHTHNLV 210 >UniRef50_Q7NMJ2 Two-component response regulator n=3 Tax=Gloeobacter violaceus RepID=Q7NMJ2_GLOVI Length = 301 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ + ++L + E + Q V++D + V Sbjct: 81 ILVVDDQAVMRRGFCSMLRLADHPFAVEEAADGIQALQQFEQLRPDLVLLDVGLPGVSGI 140 Query: 56 NFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTF---VPRTITIIDFVALINGS------- 105 +I L+P+ I+ + L V + +++ + + + Sbjct: 141 EVARRIHSLEPLAKILMVSELEEDFLQAFRVDARGCLLKSVEAQELLNAVGLVLSGYLVF 200 Query: 106 ----------YCSVPEAA-------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 + +PE +SL++++ ++L IA + T +I + L IS +T Sbjct: 201 GKAIVRLIFEHAYLPEEPRKPGKLAISLTKREQEILGLIAQEYTNSEIAKHLYISPRTVD 260 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ +M L + LVR L+ Sbjct: 261 SHRARLMQKLGTRNTAGLVRIAVQQGLL 288 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 30/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ + + +L VH+ E +Q V++D + Sbjct: 8 VLLVDDHAVVREGYRRLLELNADVHVCGEAADAAQAYQRFCALRPDVVVMDVSLPGASGI 67 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN-----GS 105 + ++ +P V+IFS ++R L + +V + V + Sbjct: 68 EAMRRMLAREPDARVLIFSVHEEAIFVRRALDAGALGYVTKASAPDVLVEAVRTIARRAG 127 Query: 106 YCSVPEAAV--------------SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 Y S + LS ++ +VL + T I EKL +S KT H+ Sbjct: 128 YLSPDISQALALRNAFSEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQ 187 Query: 152 HNIMMILNLKRINELVRHQHIDYL 175 I +L + L Sbjct: 188 SVIRQKFGADNGVQLAQMASRLGL 211 >UniRef50_C4XSZ8 NarL family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XSZ8_DESMR Length = 226 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 37/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-----IDVMLH-QNAFVIIDTLMNNVFHS 55 I + + IL+ + E + + +++D + Sbjct: 8 IAIADDHGLMRQGLAAILAADPRFEVVGEAADAAGAVGLARDLAPDVLLLDVGLAGGSGV 67 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + ++ L P ++ + + C + +V + VA I Sbjct: 68 DVAGRVAGLAPECRVVMVTMHARLDLVAACFRAGAMGYVVKDSAATSLVAAIEAVLRGER 127 Query: 104 -------------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISL 144 A SL+R++ Q+L +A + I +L IS Sbjct: 128 YLDAAITPQVLLRLDEYAARKTGPRDPAYDSLTRREQQILRLLAEGRSVAAIATELFISK 187 Query: 145 KTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 KT H+ NI L L + ELVR+ +V Sbjct: 188 KTVENHRANICGKLGLANLAELVRYAARLGIV 219 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 34/204 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLHQ--NAFVIIDTLMNNVFHS 55 LI+ + + +++ + + E ++ + V++D + Sbjct: 21 VLIVDDHAILREGLIQLINSTPGLSVCGAAKNAHEGFELIEKTMPDVVLVDISLPGKSGL 80 Query: 56 NFLTQIERLKPVHVIIFSPFNIKRCLG-----KVPVTFVPRTITIIDFVALINGSYCS-- 108 + I P ++ + + ++ + +A I Sbjct: 81 ELIKDIHAAYPDIALLVLSMHEESLYAERVLRAGARGYLMKNEGGQKLIAAIQKVLAGGI 140 Query: 109 ---------------------VPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 +LS ++ +V I + I E+L +S+KT Sbjct: 141 SVSERVANRILQGVSGKRKALSISPIEALSDREFEVFQLIGKGYGSRQIAEQLSLSVKTV 200 Query: 148 YCHKHNIMMILNLKRINELVRHQH 171 ++ +I L LK +LV + Sbjct: 201 EAYRASIKQKLYLKSGPQLVHYAI 224 >UniRef50_B7A7I0 Two component transcriptional regulator, LuxR family n=2 Tax=Thermaceae RepID=B7A7I0_THEAQ Length = 192 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 14/179 (7%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI----QNEEEIDVML-HQNAFVIIDTLMNNVFHSN 56 LI +F +K L + + +E +D L + V++D M + Sbjct: 3 VLIADDHPLFRLGLKAGLEAQGLAVVAEAENGQEALDKALALKPDAVLLDLRMPGMDGLT 62 Query: 57 FLTQIERLKPVHVIIFS-----PFNIKRCLGKVPVTFVPRTITIIDF----VALINGSYC 107 ++ +I F P +K + + ++ + + ++ G Sbjct: 63 CARKLRERGYRGLIAFLTTYQEPALLKEAALAGADAYFSKELSAPELKRRLLRVMQGEER 122 Query: 108 SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNLKRINEL 166 P SL+ ++ +VL+ +A ++ +++ + L +S T H N+ L + E Sbjct: 123 LTPPDLPSLTPREGEVLALLAQGLSVKEMAKALGLSPDTVKDHLENLYAKLEARNRVEA 181 >UniRef50_C0GHS5 Two component transcriptional regulator, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHS5_9FIRM Length = 219 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDV------MLHQNAFVIIDTLMNNVFHS 55 I+ + ++ + ++ + I E + + V++D + + + Sbjct: 6 IFIVDDHEVVRLGLQGLFARYEELEIVGEAASGEEAVQVVPVIKPDVVLLDVRLQGIHGA 65 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYC--- 107 + I P + V++ S F ++ +V + IT + + I Sbjct: 66 DTCRLITSAVPGIKVVMLSSFAEPEEVQAAFTAGASAYVLKNITSGNVIKAIKAVMQGES 125 Query: 108 -----------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 LS+++ ++L + T ++I +L +S KT H Sbjct: 126 FIDPEITEQVMSLIRGEKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNH 185 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 I+ L + ++ ++ Sbjct: 186 VSRILDKLGVSNRSQAAAFMARRSVI 211 >UniRef50_A4CN07 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CN07_9FLAO Length = 217 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 30/199 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ +F +++IL + + + Q E ++++ + V+ D M + Sbjct: 4 IALVDDHRLFLEGIRSILDREIGLEVHASVGQGVELLNLLKTTRADVVLTDIRMPGMDGL 63 Query: 56 NFLTQI-ERLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALING------ 104 + QI VI + + +K L ++ + + + V I+ Sbjct: 64 SLTRQICRSFPNTRVIALTMLDHEQDVKDLLDAGARGYLVKNVEKEELVQAIHTVARGDY 123 Query: 105 -------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHK 151 + +V L+R++ QVL IA T++ I E LK+S T H+ Sbjct: 124 YLSRKFRPIYKNWKSQEPRQESVRLTRRERQVLELIAQGRTSQQIAESLKLSRFTIDTHR 183 Query: 152 HNIMMILNLKRINELVRHQ 170 NI + ++ L++ Sbjct: 184 KNIHKKMGIRSNIGLLKAA 202 >UniRef50_A7NIZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Roseiflexus RepID=A7NIZ3_ROSCS Length = 230 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 LI+ + + +L+ + + E + V H V++D M + Sbjct: 16 VLIVDDHELARAGLAAVLACEPGIEVVGEADNGAAALDFVARHPVDLVMMDLQMPVIDGI 75 Query: 56 NFLTQIERLKPVHVIIF-----SPFNIKRCLGKVPVTFVPRTITIIDFV----------- 99 +I+ L P II P + L ++ + + + + Sbjct: 76 EATRRIKALHPAIGIIMVTVQAKPDALMEALRAGVAGYLLKDASRREIIGAVRQVLRGEA 135 Query: 100 ------------ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 L + + L+ ++ QVL + T +I +L IS T Sbjct: 136 FLNPDLVLQTLRRLAHATPTDDATPIEPLTPREQQVLRLLMQGKTNREIARELIISPGTV 195 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H +I+ L + + LV Sbjct: 196 KVHVEHIIAKLGVSDRTQAAVRALELGLV 224 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 64/205 (31%), Gaps = 34/205 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVV----HIQNEEEIDVMLHQ--NAFVIIDTLMNNVFHS 55 + TM ++ ++ + N ++ L Q + +D + Sbjct: 21 IAFVDDHTMLRDGLQKLVESQPDLCCYWTASNTQDALQQLEQGKPDMLAVDISLPGRNGL 80 Query: 56 NFLTQIERLKPVH-VIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + L P +++ S F +R L +V + + I Sbjct: 81 ELIKDALALHPDLPILVISMHDESFYAQRVLKAGARGYVMKDAESTTLLQAIRNVLEGGR 140 Query: 104 ----------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + LS ++ +V I+ +T+ I + L IS+KT Sbjct: 141 YVSPAMSAQIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEGKSTQQIGDALNISVKTV 200 Query: 148 YCHKHNIMMILNLKRINELVRHQHI 172 H+ +I L L+ ++R+ Sbjct: 201 EVHRAHIREKLKLEDGASVLRYAVR 225 >UniRef50_A6E779 Response regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E779_9SPHI Length = 220 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 80/213 (37%), Gaps = 38/213 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML---------HQNAFVIIDTLMNNV 52 + MF + N + + + + E + L + V++D M + Sbjct: 4 IAVTDDQVMFRECLVNNIKTFDNMQVMFEAGNGIELLKQMDACGDDKPDIVLMDLNMPEM 63 Query: 53 FHSNFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSY- 106 +++ P VI+ S +I R + + ++ + + + I +Y Sbjct: 64 NGMEATRKLKVDHPDVRVIVLSVHGEEKHISRMIQQGVNGYIAKNSELTELKNAIEATYN 123 Query: 107 -----------------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKIS 143 +AA SL++++ ++L I ++ TT +I E L IS Sbjct: 124 NGFYFNELVLKTLQSGSLLNKNNVKGFDAASSLTQREKEILRLICDECTTAEIAEALSIS 183 Query: 144 LKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 L+T H++N+++ K + LV + L+ Sbjct: 184 LRTVDGHRNNLLVKTGAKNVAGLVVFAFKNKLI 216 >UniRef50_A5FIE9 Two component transcriptional regulator, LuxR family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FIE9_FLAJ1 Length = 213 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVV-----HIQNEEEIDVMLHQN-AFVIIDTLMNNVFHS 55 LI TMF + ++L + + + E ++++ F+I+D M + Sbjct: 6 LLIADDHTMFLQGIISLLEQEPNITIIDKAVNGIEALEIIKKGVVDFIILDISMPEMDGI 65 Query: 56 NFLTQIERLKP-VHVIIFSP----FNIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 +++ P V ++I S + R + ++ + + + IN Sbjct: 66 ELSKILKKQHPNVKILIVSTHSNVMIVSRLIRIGVNGYLLKNAAKEELLKAINTIASGEN 125 Query: 104 --------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 LS ++ ++L IA++ T +I EK ISL T Sbjct: 126 YFAEELEEKHLSNSSKIEKQVSNLTELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNT 185 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H+ N++ LN K LV++ + LV Sbjct: 186 HRRNLLSKLNAKNTAGLVKYAVENGLV 212 >UniRef50_C4RQT0 LuxR family two-component system transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQT0_9ACTO Length = 279 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 32/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEID------VMLHQNAFVIIDTLMNNVFHS 55 + T+ ++ +LS + E + + +++D M + Sbjct: 63 VCLADDHTLLRDGIREMLSTEPEFAVVGEASSGPEAVALAVRLRPDVLLLDVEMPGPGAA 122 Query: 56 NFLTQIERLKPV-HVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + Q+ R VI+ + + + L V ++ +TI D VA + Sbjct: 123 AVIRQVRRTASETRVIVLTMHDDPDMVHELLEAGAVAYLLKTILRDDLVAAVRSVVRRPT 182 Query: 111 EAA---------------------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYC 149 ++ L+ ++ +VL A M+ I +L I+ T Sbjct: 183 QSVLLAVSRETVERLDRQKPRTNGTPLTSRELEVLRLTAEAMSNAQIASRLFITEATVKR 242 Query: 150 HKHNIMMILNLKRINELVRHQHIDYLV 176 H NI L + +R L+ Sbjct: 243 HLTNIYAKLQAVSRVDAIRKATAARLI 269 >UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQV4_9DELT Length = 222 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 39/214 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQN------EEEIDVMLHQNAFVIIDTLMNNVFHS 55 L++ + ++++L+ + + + E VI+D M + Sbjct: 7 ILLVDDHKLLMEGIRSLLAPHSHLRVAGMAPDGKEAVGLAATLSPDLVIMDISMPGMNGV 66 Query: 56 NFLTQIERLKPV-HVIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALI-------- 102 I +++P ++I++ +R + + V ++ + I Sbjct: 67 EASRAILQIRPETRILIYTGHEDQRHLLELIQLGIMGHVCKSDPPSVLLQAIDAVRQGEV 126 Query: 103 -----------------NGSYCSVPEAAV---SLSRKQHQVLSCIANQMTTEDILEKLKI 142 N S E LS ++ ++ +A+ + I + L I Sbjct: 127 FLSCADPGGCMAALMRQNRQRLSPAEGGPDIGMLSPREKEIFRLLADGYSVRQIGDALNI 186 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYLV 176 S KT HK++++ L INEL + LV Sbjct: 187 SPKTVETHKYSVLTKLRASSINELTKMAIRLGLV 220 >UniRef50_C4KBL1 Two component transcriptional regulator, LuxR family n=8 Tax=Betaproteobacteria RepID=C4KBL1_THASP Length = 212 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 22/191 (11%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEE-EIDVMLHQNA---FVIIDTLMNNVFHSN 56 + ++ D ++ +L +E E + V++D M + Sbjct: 11 IVHVVDDDEALRDSLAWMLEANGHAVAVHESGEAFLAACTPEMTGCVLLDVRMPGMSGLE 70 Query: 57 FLTQIERLKPVHVIIFSPFNIK-----RCLGKVPVTFVPRTITIIDFVALING------- 104 ++ R + ++F + L + V FV + + + ++ Sbjct: 71 VFEELGRRRCGLPVVFITGHGDVPMAVSALKQGAVDFVEKPFGEREMLRVVEQCLRLERE 130 Query: 105 ------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 L++++ +VL I + I + L IS+KT H+ +M + Sbjct: 131 TRDRRLQEADTARRLGLLTQREREVLELIIVGKLNKQIADVLGISIKTVEVHRARVMEKM 190 Query: 159 NLKRINELVRH 169 + ELV+H Sbjct: 191 GAHSLAELVQH 201 >UniRef50_A0AX19 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderia cenocepacia RepID=A0AX19_BURCH Length = 214 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 68/192 (35%), Gaps = 22/192 (11%) Query: 1 MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNA----FVIIDTLMNNVFHSN 56 + I+ D + +L + + + + + V++D M + + Sbjct: 15 VVAIVDDDEAVRDGLALLLWTVGLRTRRFADAHAFLAEADDSTLGCVLLDLRMPGMSGLD 74 Query: 57 FLTQIERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVPEA 112 L + + + VI+ + +R + F+ + + + + ++ + + Sbjct: 75 ALDCLAGRRSLPVIVLTGHGNVDACRRAFKRGACDFLRKPVDDDELIDVVQQALRGHADR 134 Query: 113 A-------------VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILN 159 +LS ++ VL I + + I L +S +T ++ N+ L Sbjct: 135 RDGDAAEQARASRMATLSARERDVLDGIVRGGSNKAIARDLGLSPRTVETYRANLFDKLQ 194 Query: 160 LKRINELVR-HQ 170 + + ELVR + Sbjct: 195 VASLVELVRDYA 206 >UniRef50_A1VIF2 Two component transcriptional regulator, LuxR family n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VIF2_POLNA Length = 219 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVMLHQNAFVIIDTLMNNVFHSN 56 L++ T+F M+ +L +VH N + + V++D + + Sbjct: 11 VLLVDDHTLFREGMRLMLGSSPLVHAHILDAGNLPDALALQQSVDLVLLDIGLPGIGGLE 70 Query: 57 FLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALING----SYC 107 L + + P VI+ + ++ L K FV +T + + Sbjct: 71 GLLSVRQRWPDAVIVMLSAHDRPELVREALSKGACGFVSKTAQPVQICQEVRRWLYQQRG 130 Query: 108 SVPEAAV---------------SLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 P+ SL+ +Q++VL +A ++ + I KL +S T H Sbjct: 131 PEPQPQALPGEAAAGAIPGGDESLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVV 190 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 I+ N E V L+ Sbjct: 191 AILRHFNALTRTEAVMASQRLGLL 214 >UniRef50_D1C1C8 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=D1C1C8_SPHTD Length = 237 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 71/209 (33%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ +F A++++L + + E Q +++D M V Sbjct: 25 VLLVDDHVLFRQALRHLLEAEPDIRVIGEAGDGRSAQQLAERFHPDVILMDISMPGVDGV 84 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTIT---IIDFVALINGSYC 107 ++ P +II + F ++ R + ++ + +ID + + Sbjct: 85 TATRDLKAGIPNTKIIILTMFAEDGHVIRAIRAGADAYLLKNSESSKVIDAIRAVARGES 144 Query: 108 --------------------SVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 E L+ ++ Q+L +A+ M+ ++I +L ++ T Sbjct: 145 VIEPQLATKLLNEFRRISEFREEETVAGLTEREIQLLRLVASGMSNKEIAAELSLAESTV 204 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 + L++K + + L+ Sbjct: 205 KNRLSLLFEKLDVKDRTQAAIYALSHGLI 233 >UniRef50_A9VYF8 Response regulator receiver n=5 Tax=Methylobacterium RepID=A9VYF8_METEP Length = 236 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 36/205 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE-----EIDVMLH-QNAFVIIDTLMNNVFHS 55 +I +F + ++ +L + + + E +D++L + VI+D M + Sbjct: 10 VALIDDHPIFRSGVRGLLGETAGIEVVGEASDGRHALDLVLRTKPDVVIMDITMTGMSGL 69 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + + I+F N + L +V + + I Sbjct: 70 AVARALREVGSAVHIVFLTVNEDLAFVDEALTAGAQGYVLKRSAGTSLLEAIEAVVLGGQ 129 Query: 104 ------------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLK 145 G P L+ ++ +VL IA MT +++ + IS Sbjct: 130 YVDAEMRAPPAPPDRTEAGPPAPHPGQEGGLTAREREVLRLIALGMTMKEVSLAMSISAA 189 Query: 146 TFYCHKHNIMMILNLKRINELVRHQ 170 + +K L L+ +VR Sbjct: 190 SVDTYKIRGCKKLGLRSRASIVRFA 214 >UniRef50_B0TSG4 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=B0TSG4_SHEHH Length = 222 Score = 128 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 +++ + ++++L V + E + HQ +I+D + + Sbjct: 7 IILVDDHILVRAGIRSLLESIANVEVIKESGDGIEALSLLRTHQPTLLILDISLPGLNGL 66 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDF------------ 98 + ++K I+ + + + L ++ + + + Sbjct: 67 EVARSVTKMKTKTKILMLSMHSDVEYVAKALTIGSHGYLMKESAVEELETAISTLINDKQ 126 Query: 99 ----------VALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 V + G + L+ +Q Q+L IA +T +I E++ +S+KT Sbjct: 127 YIGKNIDLEMVDKLRGDSNQESDLIKLLTSRQRQILQLIAEGYSTREIAERMSVSIKTVE 186 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ +IM LN+ I LVR L+ Sbjct: 187 THRAHIMSRLNIFDIAGLVRFAIRCKLI 214 >UniRef50_B1ZU87 Two component transcriptional regulator, LuxR family n=4 Tax=Verrucomicrobia RepID=B1ZU87_OPITP Length = 212 Score = 128 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 67/198 (33%), Gaps = 23/198 (11%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI-----QNEEEIDVML-HQNAFVIIDTLMNNVFHS 55 L++ + + S + + E I+ H+ V++D M+ + Sbjct: 12 ILLVDDHMVMRMGLVTATSDEPDMEVVADVENGAEAIEAYRAHRPDVVVLDLRMHGMSGV 71 Query: 56 NFLTQIE-RLKPVHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 + + + V V+++S + + + L FV + + + + I + Sbjct: 72 DAIRALRSEFGNVRVLVYSNYAAGEEVYQALKAGASGFVVKEMALERLLEAIRKVHAGEQ 131 Query: 110 -----------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 LS ++ VL +A + ++I +L + T H NI+ L Sbjct: 132 YVPPEIAMRMGERLMAQLSPRELDVLKLVAKGRSNKEIAAELHVVEGTAKIHVANILTKL 191 Query: 159 NLKRINELVRHQHIDYLV 176 + + + ++ Sbjct: 192 GVSDRTQAIVVAVRRGII 209 >UniRef50_A5V148 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=A5V148_ROSS1 Length = 216 Score = 128 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 33/207 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEI------DVMLHQNAFVIIDTLMNNVFHS 55 LI+ T+ ++ IL + + E + + + +++D M + Sbjct: 8 ILIVEDQTLMRQGLRTILDLEESIRVVGEARDGAEGVREALRLRPDIILMDVQMPVMNGV 67 Query: 56 NFLT-QIERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCS-- 108 + I +I+ + F + + + + ++ + + I + Sbjct: 68 EAIRAIIAAWSQARIIVLTTFDRDDYVFQSVRAGAMGYLLKDAPAEALLQTIRRVHAGEV 127 Query: 109 --VPEAAVS------------------LSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 PE A LS ++ +VL +A ++ +I +L I+ T Sbjct: 128 FIQPEIASRTLREAATGRRRAGTIPFDLSEREREVLVLLAQGLSNREIAGRLSITEGTVK 187 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYL 175 H NI+ L + + + L Sbjct: 188 NHVSNILAKLQAENRTQAANIARREGL 214 >UniRef50_Q6ADI3 Two-component system, regulatory protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6ADI3_LEIXX Length = 207 Score = 128 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 27/202 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE----EEIDVMLH--QNAFVIIDTLMN-NVFH 54 +++ + M+ +L + + EE ++L + V++D + + Sbjct: 4 IVLVDDHPILRHGMRTLLDTQEDFEVVGDCGDPEEYRLLLKSARPDIVLMDLALGGDTDG 63 Query: 55 SNFLTQIERLKPVH-VIIFSPFNIK----RCLGKVPVTFVPRTITIIDFVALIN----GS 105 P V++F+ ++ R L ++ + T ++ A I G Sbjct: 64 VALTAHTRATSPSTAVLVFTTYDSDADFVRSLDAGASGYLLKDSTPVELFAAIRTARDGG 123 Query: 106 YCSVPE-----------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 P SL+ ++ +VL+ +A T + E+L +S T H ++I Sbjct: 124 SALSPAVASRLMDRMRAPQESLTPREIEVLALLATGRTNRQVGERLFVSETTVKTHVNHI 183 Query: 155 MMILNLKRINELVRHQHIDYLV 176 L + V + L+ Sbjct: 184 FTKLGVDTRAAAVSRAMKEGLI 205 >UniRef50_Q1YTG7 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTG7_9GAMM Length = 214 Score = 128 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 76/210 (36%), Gaps = 35/210 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHS 55 L++ + +K +L + + E E + + Q+ V++D + Sbjct: 4 ILLVDDHAVVRNGLKQMLIEHLGSVVLGEANDAIEAMQQVRKQDWGLVVLDIRLPGRSGV 63 Query: 56 NFLTQIERLKPVH-VIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + L QI+ KP V+I S + R + ++ + + + + + Sbjct: 64 DVLKQIKSEKPHLPVLILSSYPESQYAVRLIQAGAAGYISKDSEETEIIKAVKTAAAGGR 123 Query: 111 ------------------------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 SLS +++Q+ +A+ +DI EKL++S KT Sbjct: 124 YINEIVGGLLANTMSRSFSNADDLSLYESLSDREYQIFLELASGKRAKDIAEKLQVSAKT 183 Query: 147 FYCHKHNIMMILNLKRINELVRHQHIDYLV 176 H+ +M + EL+ + + L+ Sbjct: 184 VATHRSRLMQKMGFSTNAELILYANKSGLL 213 >UniRef50_UPI00017468E1 two-component response regulator n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468E1 Length = 210 Score = 128 bits (322), Expect = 8e-29, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 24/199 (12%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 L++ + + + L + + E H VI+D + V Sbjct: 10 ILLVDDHFVVRSGLAASLGLEEDLLVVAEAGSAAEALTACAAHTPDVVIMDLQLGEVNGI 69 Query: 56 NFLTQIERLKP-VHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN----GSY 106 Q+ + P + +++FS F ++ R + + ++ ++ D + I G Sbjct: 70 TCTEQLGQAHPGIRILVFSSFARDEDVYRAIRAGALGYLQKSAPREDLLKAIRTVGLGKR 129 Query: 107 CSVPEAAVSL---------SRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMI 157 + A L S ++ +VL+ +A + ++I L +S +T H N++ Sbjct: 130 YLPGDIAQRLAERLGRPEPSPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEK 189 Query: 158 LNLKRINELVRHQHIDYLV 176 L + + V L+ Sbjct: 190 LGAQDRTQAVTEAIRRGLL 208 >UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanobacteria RepID=B1WQK4_CYAA5 Length = 247 Score = 128 bits (322), Expect = 8e-29, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 33/208 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEE-----IDVMLH-QNAFVIIDTLMNNVFHS 55 LI+ D + ++ LS+ I + E + L + V++D + + Sbjct: 40 ILIVEDDPLMQLGLEQALSEHPNFEIIGQAEDGYTGVQQALELKPDLVVMDIGLPRLDGI 99 Query: 56 NFLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 QI+ +P ++ + + L + + ++ +A I + Sbjct: 100 AATKQIKEQEPNIHVVMLTSHTLQTEVVAALSSGADAYCIKGASLERLLAAIEAAQDGAT 159 Query: 107 ---------------CSVPEAA---VSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFY 148 PE LS ++ +VL I + +I E L +S T Sbjct: 160 YLDPQIARLVLDNLKSPNPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLSTNTIK 219 Query: 149 CHKHNIMMILNLKRINELVRHQHIDYLV 176 H IM L + + LV Sbjct: 220 THVRGIMNKLAVDDRVQAAVVALRSGLV 247 >UniRef50_A7NP18 Two component transcriptional regulator, LuxR family n=12 Tax=Bacteria RepID=A7NP18_ROSCS Length = 222 Score = 128 bits (322), Expect = 8e-29, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 31/206 (15%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE------EIDVMLHQNAFVIIDTLMNNVFHS 55 L+ MF ++ +L + I E + V++D M + Sbjct: 8 ILLADDHRMFRQGLRELLERKGGFIIVGEASTGREVLAQAAALRPDIVLLDIQMPEIDGV 67 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSY---- 106 Q+ + P VI+ + + ++ + ++ + + + +I + Sbjct: 68 AVARQLAQTHPDVKVIMLTMYRQDQHLFEAIKAGARAYLLKDADADELIDVIERVHRGEA 127 Query: 107 ----------------CSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 S+ + A L+ ++ +L+ +A I ++L +S KT Sbjct: 128 ALDPTVTLRVFDEFRRLSIDQDAEQLTERERDILTLLAEGHDNRTIAQRLFLSEKTVGNR 187 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 I L + + L+ Sbjct: 188 LSEIFQKLGVSNRTQAALVAVQRGLI 213 >UniRef50_C1XWT0 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=C1XWT0_9DEIN Length = 206 Score = 128 bits (322), Expect = 8e-29, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 65/203 (32%), Gaps = 28/203 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 I+ ++ + + + + E E I+ + H V++D + + Sbjct: 4 VFIVEDHAFTRDGLRVAVGREPDLQVVGEARSAEEGIEQLAHTSADVVLMDIGLPGMDGI 63 Query: 56 NFLTQIERLKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFVALIN-------- 103 ++ V V++ + + + + ++ + I Sbjct: 64 EATKLVKERFGVRVVVLTVHQLEAEVLAAMTAGADAYCLKSTDPASLLLAIRAAAIGSTY 123 Query: 104 ----------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHN 153 G + LS ++ +VL IA ++ ++I ++L ISL T H Sbjct: 124 LDPQIAHIVLGQLSVLSGGQAQLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEE 183 Query: 154 IMMILNLKRINELVRHQHIDYLV 176 ++ L+ + L+ Sbjct: 184 LLAKLSASDRTQAAIKAVRQGLL 206 >UniRef50_C6E2Z2 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter sp. M21 RepID=C6E2Z2_GEOSM Length = 215 Score = 128 bits (322), Expect = 8e-29, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 80/206 (38%), Gaps = 32/206 (15%) Query: 3 LIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLHQN-AFVIIDTLMNNVFHSN 56 ++++ + + +L K + + + E++ +L + VIID +++ S+ Sbjct: 7 ILMSDQILVRQCLWVLLEKAPELDLAAQLDFAATELEEVLELHSDLVIIDPDSSDIDGSD 66 Query: 57 FLTQIER-LKPVHVIIFS----PFNIKRCLGKVPVTFVPRTITIIDFV------------ 99 + + P +I S P + L FVP++ + + + Sbjct: 67 TIRSLVSGTFPAKALILSGRAEPKRVADLLNAGASGFVPKSSPVDELLWAVKAVTGNGFY 126 Query: 100 ---------ALINGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH 150 ++ + V L+ ++H ++ +A ++ + E+L IS+KT H Sbjct: 127 LPPELDAVVRRKGSTWSAAQPQQVILTPREHDIMVLLAQGKSSRAVSEQLLISVKTVEAH 186 Query: 151 KHNIMMILNLKRINELVRHQHIDYLV 176 + +IM L L + L ++ + Sbjct: 187 RAHIMKKLGLSGMAALAKYALRAGFI 212 >UniRef50_A5D0L7 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0L7_PELTS Length = 223 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 74/209 (35%), Gaps = 34/209 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHI----QNEEEIDVMLH-QNAFVIIDTLMNNVFHSN 56 L++ D + +++ + ++ + EE + + + +++D M + Sbjct: 11 LLLVDDDPLVRRSLRMLFELHDINVVGEASNGEEALKAIARLKPTMILMDVNMPKMDGIQ 70 Query: 57 FLTQIERLKPVHVIIFSPFN-----IKRCLGKVPVTFVPRTITIIDFVALINGS------ 105 L I+ P +I + + + + +V + + ++ Sbjct: 71 ALKAIKTNYPDIQVIILTVHNQHEKVVQAIRDGCSAYVLKDSPPEQLIEVVESVAEGRYF 130 Query: 106 ------------------YCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 P+ L+ ++ +VL I N ++ ++I KL I+L+T Sbjct: 131 VDTSIANELLVNLVQGTPRRQHPKNLPLLTLREKEVLQLIVNGLSNKEIAGKLNITLRTV 190 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDYLV 176 H +I+M LN+ + + LV Sbjct: 191 KAHVSSILMKLNVNDRTQAAVLAIQENLV 219 >UniRef50_D2PZN7 Two component transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZN7_9ACTO Length = 242 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 73/213 (34%), Gaps = 39/213 (18%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 ++ + A + +L + + + E E + + V++D M + Sbjct: 18 VVLADDQALLRGAFRTLLDSTDDIAVVGEAGDGEEAVALTRRTHPDVVVMDIQMPGMDGL 77 Query: 56 NFLTQI---ERLKPVHVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN----- 103 QI L+ V+I + + + + L F+ + I + + Sbjct: 78 TATAQICADPDLRASRVLILTTYETDEYVAQALRAGASGFIGKGIDADGLIDAVRTIADG 137 Query: 104 -------------GSYCSVP--------EAAVSLSRKQHQVLSCIANQMTTEDILEKLKI 142 + + P E V+L+ ++ ++++ +A ++ +I +++ + Sbjct: 138 DALLSPAATRSLVARFLATPVDTAPRDVERLVALTPREREMVALVATGLSNLEIADRMYV 197 Query: 143 SLKTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 S T H M L + +LV + L Sbjct: 198 SPFTVRAHVQRAMTKLEARDRAQLVAIAYRTGL 230 >UniRef50_D2BGT0 DNA-binding response regulator, LuxR family n=5 Tax=Dehalococcoides RepID=D2BGT0_DEHSV Length = 232 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 70/201 (34%), Gaps = 35/201 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNE-----EEIDVMLH-QNAFVIIDTLMNNVFHS 55 LI + M +LS+ + + E E +D++ + V++D +M + Sbjct: 6 VLIADDHAVLREGMSRLLSQEKDIEVVGEAGDGQEAVDMVAQFKPDVVLMDIVMPRLTGV 65 Query: 56 NFLTQIERLKPVH-VIIFSPFNIKR----CLGKVPVTFVPRTITIIDFVALING------ 104 I++ P ++I + ++ R L ++ ++ + V I Sbjct: 66 EATKLIKKNNPSTCILILTAYSDIRYILGLLEAGASGYLLKSAKSDEIVGAIRAIKAGES 125 Query: 105 ------------------SYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKT 146 + LS ++ ++L + ++ +I +KL +S++T Sbjct: 126 VLDSIATRKLLERVVNVSKESDEDKVRGQLSPREVEILQLASKGLSNREIADKLTLSMRT 185 Query: 147 FYCHKHNIMMILNLKRINELV 167 H NI + E + Sbjct: 186 VKAHLSNIFNKMRCSCRTEAI 206 >UniRef50_C4DCK3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Actinomycetales RepID=C4DCK3_9ACTO Length = 214 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 34/207 (16%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQ------NAFVIIDTLMNNVFHS 55 L++ + ++ + + + E + + V++D M + Sbjct: 4 VLLVDDQRLIRAGLRMLCEPAADIEVVGEADGGQAAVRLAGELCPDLVLMDLRMPGMDGI 63 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALIN------- 103 +I +P V+ + F ++ L F+ + + + + I Sbjct: 64 TATQRILAERPSTRVVALTTFDDDDHLYPALAAGACGFLVKDTSPNELLEAIRKAADGDT 123 Query: 104 ---------------GSYCSVPEA-AVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTF 147 + SVP A L+ ++ +VL+ + DI E+L + + T Sbjct: 124 PFSAGVVKRIVDSAVRARASVPTATLPKLTTREREVLALVGAGYANVDIAERLHLGVTTV 183 Query: 148 YCHKHNIMMILNLKRINELVRHQHIDY 174 H ++M L Sbjct: 184 KTHIASLMTKTGCSNRVRLAVLAVRSG 210 >UniRef50_C1F5C0 DNA-binding response regulator, LuxR family n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5C0_ACIC5 Length = 213 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 23/198 (11%) Query: 2 FLIITRDTMFFTAMKNILSKGNV----VHIQNEEEIDVMLHQ-NAFVIIDTLMNNVFHSN 56 LI+ M + +L + + + + I++ Q V++D + + + Sbjct: 14 VLIVDDHPMVREGLAGVLLRHKMTVAGLAANGRQAIEIYKEQRPDVVLLDLRLPDQSGFD 73 Query: 57 FLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVA----LINGSYC 107 I P +++FS +I + ++ + I + G C Sbjct: 74 VARAILEFDPEARILVFSSAQGDASIHTAISLGVRGYLLKGIDGAALAEQVRHVARGGSC 133 Query: 108 SVPEAAVSLS---------RKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMIL 158 PEAA L+ ++ +VLS I+ + ++I L ++ T H I+ L Sbjct: 134 LSPEAAEKLTQYITSKKLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKL 193 Query: 159 NLKRINELVRHQHIDYLV 176 + V L+ Sbjct: 194 QANDRTQAVVIAIQRGLL 211 >UniRef50_C7R398 Two component transcriptional regulator, LuxR family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R398_JONDD Length = 230 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 38/212 (17%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQ-----NEEEIDV-MLHQNAFVIIDTLMNNVFHS 55 +I+ D + ++ IL + + EE + + HQ V++D M Sbjct: 11 IIIVDDDALVRAGLRMILGGDPGITVVAEGTHGEEAVSLYAAHQPDVVLMDIRMPVRDGL 70 Query: 56 NFLTQIERLKP-VHVIIFSPFN----IKRCLGKVPVTFVPRTITIIDFVALIN------- 103 + I P +V++ + F+ I + L F+ + + D V +N Sbjct: 71 SATKDIVTRWPHANVLVLTTFDTDEFIVKALRAGARGFLLKDTSPPDLVRAVNLAGDGHP 130 Query: 104 --------------------GSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKIS 143 G L+ ++ V IA + ++I + L +S Sbjct: 131 TLSPSVTAQLIAKVSEEPDTGRQRQARRMVEQLTERELDVAQQIAQGKSNQEISQTLYMS 190 Query: 144 LKTFYCHKHNIMMILNLKRINELVRHQHIDYL 175 + T H I ++ ++ H +L Sbjct: 191 IPTVKTHISRIFTKFDVDNRVQIAIRMHDAHL 222 >UniRef50_B7AAT6 Two component transcriptional regulator, LuxR family n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT6_THEAQ Length = 207 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 70/204 (34%), Gaps = 29/204 (14%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEE----EIDVMLH--QNAFVIIDTLMNNVFHS 55 +++ + + ++++L V + E E +L Q I+D + + Sbjct: 4 VVLVEDHLLVRSGLRHLLEARGPVRVVGEAGSCREALELLEKVQADVAILDVSLPDGTGI 63 Query: 56 NFLTQIERLKPV-HVIIFSPF----NIKRCLGKVPVTFVPRTITIIDFVALINGSYCSV- 109 ++ P ++ S ++ L +V + + + + Sbjct: 64 ALCQRLRERFPELRLLALSMHEDLEYVRGFLQAGGQGYVSKAAVDQELLDAVLAVARGER 123 Query: 110 -----------------PEAAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKH 152 LS ++ +VL +A ++ +++ EKL IS KT ++ Sbjct: 124 YLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRE 183 Query: 153 NIMMILNLKRINELVRHQHIDYLV 176 M L L +EL+R+ + Sbjct: 184 RGMEKLGLASRSELLRYAARKGWI 207 >UniRef50_A8LYA5 Two component transcriptional regulator, LuxR family n=7 Tax=Actinomycetales RepID=A8LYA5_SALAI Length = 221 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 27/202 (13%) Query: 2 FLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVML------HQNAFVIIDTLMNNVFHS 55 L++ + +++ + + E Q VI+D + + Sbjct: 12 VLLVDDHDLIRKGLRHAFERDRQFEVVGEAATAAEGVRQAGALQPDVVIMDLRLPDGSGL 71 Query: 56 NFLTQIERLKPVHVIIFSPFNIKR-----CLGKVPVTFVPRTITIIDFVALINGSYCSVP 110 + + I+ L FVP+T + VA + S Sbjct: 72 EATRALRKSSATMGIVVLTMYAGDDQLFGALEAGASAFVPKTAPADEVVAAARHAASSPS 131 Query: 111 E----------------AAVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNI 154 + LS ++ QVL +A+ M+ I ++L +S T H + Sbjct: 132 AFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMSVAGIAKQLFVSESTAKTHISKL 191 Query: 155 MMILNLKRINELVRHQHIDYLV 176 L + + L+ Sbjct: 192 YEKLGAANRAQALMTALRLGLL 213 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.165 0.481 Lambda K H 0.267 0.0505 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,044,102,601 Number of Sequences: 3077464 Number of extensions: 46434472 Number of successful extensions: 226379 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 9913 Number of HSP's successfully gapped in prelim test: 11554 Number of HSP's that attempted gapping in prelim test: 204884 Number of HSP's gapped (non-prelim): 24130 length of query: 176 length of database: 1,040,396,356 effective HSP length: 120 effective length of query: 56 effective length of database: 671,100,676 effective search space: 37581637856 effective search space used: 37581637856 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 89 (38.6 bits)