 |
| Job Description | P37195 | | Confidence | 99.15% | Date | Thu Jan 5 11:55:01 GMT 2012 |
| Rank | 103 | Aligned Residues | 102 |
| % Identity | 19% | Template | c2qxyB_ |
| PDB info |
PDB header:transcription | Chain: B: PDB Molecule:response regulator; |
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
|
| Resolution | 1.95 Å |
|
 |
|   |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
|
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
| Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| . | . | . |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
| Query Sequence |   |
F | L | I | I | T | R | D | T | M | F | F | T | A | M | K | N | I | L | S | K | . |
. |
G | N | V | V | H | I | Q | N | E | E | E | I | D | V | M | L | H | . |
. |
Q | N | A | F | V | I | I | D | T | L | M | N | N | V | F | H | S | N | F | L | T | Q | I | E | R | L | K | P | V | H | V | I | I | F | S | P | . |
. |
. |
| Query Conservation |   |
|
|
|
|
|   |
|   |   |   |   |   |
|
|   |   |
|
|   |   | . | . |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   | . | . |   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |   | . | . | . |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
| Template Conservation |   |
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |
|   |
|   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
| Template Sequence |   |
V | X | V | V | D | E | S | R | I | T | F | L | A | V | K | N | A | L | E | K | D | G | F | N | V | I | W | A | K | N | E | Q | E | A | F | T | F | L | R | R | E | K | I | D | L | V | F | V | D | V | . |
F | E | G | E | E | S | L | N | L | I | R | R | I | R | E | E | F | P | D | T | K | V | A | V | L | S | A | Y | V |
| Template Known Secondary structure |   |
 |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  |
|
| . |
| S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  | S |
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
|   |
|   |   |
|
|
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
| Predicted Secondary structure |   |
. | . |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
. |
. |
F | N | I | K | R | C | L | G | K | V | P | V | T | F | V | P | R | T | I | T | I | I | D | F | V | A | L | I | N | G |
| Query Conservation |   |
. | . |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
| Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
| Template Sequence |   |
D | K | D | L | I | I | N | S | V | K | A | G | A | V | D | Y | I | L | K | P | F | R | L | D | Y | L | L | E | R | V | K | K |
| Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|