BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (181 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AA01 Transcription antitermination protein nusG n=217... 366 e-100 UniRef50_P57151 Transcription antitermination protein nusG n=17 ... 313 1e-84 UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 ... 293 2e-78 UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 ... 260 2e-68 UniRef50_Q87A27 Transcription antitermination protein nusG n=71 ... 233 3e-60 UniRef50_P65591 Transcription antitermination protein nusG n=84 ... 226 3e-58 UniRef50_B4R8J9 Transcription antitermination protein nusG n=157... 211 8e-54 UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 T... 197 1e-49 UniRef50_A0Q872 Transcription antitermination protein nusG n=11 ... 195 6e-49 UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 ... 191 7e-48 UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 T... 190 1e-47 UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 T... 188 8e-47 UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 T... 187 1e-46 UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 T... 185 5e-46 UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 T... 176 4e-43 UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 T... 176 4e-43 UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 T... 171 9e-42 UniRef50_D1CD65 Transcription antitermination protein nusG n=5 T... 171 1e-41 UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 T... 171 1e-41 UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 T... 170 2e-41 UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 T... 167 2e-40 UniRef50_B3T6R2 Putative transcription termination factor nusG n... 166 3e-40 UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 ... 166 3e-40 UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 ... 166 4e-40 UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 T... 160 1e-38 UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 ... 159 3e-38 UniRef50_B3E158 Transcription antitermination protein nusG n=3 T... 159 3e-38 UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 ... 157 2e-37 UniRef50_D1BP79 Transcription antitermination protein nusG n=5 T... 155 6e-37 UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 T... 154 9e-37 UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 ... 151 8e-36 UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 T... 149 6e-35 UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 T... 148 7e-35 UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 T... 148 8e-35 UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 T... 147 1e-34 UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 T... 146 3e-34 UniRef50_P35872 Transcription antitermination protein nusG n=13 ... 146 3e-34 UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212... 144 2e-33 UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 T... 143 2e-33 UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 T... 143 2e-33 UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 T... 142 4e-33 UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 T... 140 3e-32 UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 ... 139 5e-32 UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 T... 138 1e-31 UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 ... 136 3e-31 UniRef50_A6CA55 Transcription antitermination protein nusG n=1 T... 136 3e-31 UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 T... 135 5e-31 UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 T... 135 6e-31 UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 T... 135 8e-31 UniRef50_B3EL56 Transcription antitermination protein nusG n=8 T... 134 1e-30 UniRef50_B0A697 Transcription antitermination protein nusG n=1 T... 134 2e-30 UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococ... 134 2e-30 UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 T... 133 2e-30 UniRef50_O83264 Transcription antitermination protein nusG n=4 T... 133 3e-30 UniRef50_P36265 Transcription antitermination protein nusG n=48 ... 133 3e-30 UniRef50_B0S060 Transcription antitermination protein nusG n=5 T... 132 5e-30 UniRef50_A7BC06 Transcription antitermination protein nusG n=2 T... 132 5e-30 UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 T... 132 5e-30 UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 T... 132 8e-30 UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 ... 131 8e-30 UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 T... 131 9e-30 UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 T... 131 9e-30 UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 T... 131 9e-30 UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 T... 131 1e-29 UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 T... 130 2e-29 UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 ... 129 3e-29 UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 ... 129 5e-29 UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 T... 129 6e-29 UniRef50_O51355 Transcription antitermination protein nusG n=22 ... 128 8e-29 UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 ... 126 3e-28 UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 T... 126 4e-28 UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 T... 125 9e-28 UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 T... 124 1e-27 UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 ... 123 4e-27 UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 T... 122 4e-27 UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 ... 122 6e-27 UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 T... 122 7e-27 UniRef50_C4LL90 Transcription antitermination protein nusG n=5 T... 122 8e-27 UniRef50_P27309 Transcription antitermination protein nusG n=58 ... 121 1e-26 UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 T... 120 1e-26 UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula st... 120 2e-26 UniRef50_C2KN14 Transcription antitermination protein nusG n=3 T... 119 3e-26 UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 ... 119 3e-26 UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 T... 119 4e-26 UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 T... 118 8e-26 UniRef50_P52852 Transcription antitermination protein nusG n=51 ... 118 9e-26 UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 T... 117 1e-25 UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 T... 117 1e-25 UniRef50_C8NX40 Transcription antitermination protein nusG n=1 T... 116 3e-25 UniRef50_P29397 Transcription antitermination protein nusG n=12 ... 116 3e-25 UniRef50_A5CC98 Transcription antitermination protein nusG n=2 T... 115 6e-25 UniRef50_P68893 Transcription antitermination protein nusG n=32 ... 115 6e-25 UniRef50_O84322 Transcription antitermination protein nusG n=14 ... 115 7e-25 UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 T... 115 8e-25 UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 T... 112 4e-24 UniRef50_A5TS63 Transcription antitermination protein nusG n=10 ... 110 2e-23 UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 ... 109 5e-23 UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 T... 108 7e-23 UniRef50_D2MPP9 Transcription termination/antitermination factor... 108 9e-23 UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 T... 107 2e-22 UniRef50_C7NC81 Transcription antitermination protein nusG n=10 ... 106 3e-22 UniRef50_O67757 Transcription antitermination protein nusG n=7 T... 105 9e-22 UniRef50_C0W699 Transcription antitermination protein nusG n=1 T... 102 6e-21 UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacil... 100 4e-20 UniRef50_B5Y935 Transcription antitermination protein nusG n=1 T... 97 3e-19 UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 T... 96 5e-19 UniRef50_UPI00016C58F1 transcription antitermination protein Nus... 91 1e-17 UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 T... 91 2e-17 UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=My... 90 4e-17 UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycopla... 90 4e-17 UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 T... 86 8e-16 UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 T... 85 1e-15 UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=My... 84 2e-15 UniRef50_Q982S4 Transcription antitermination protein nusG n=1 T... 82 6e-15 UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 T... 82 9e-15 UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 T... 79 9e-14 UniRef50_P36262 Transcription antitermination protein nusG (Frag... 78 1e-13 UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 T... 77 4e-13 UniRef50_C6PET8 Transcription antitermination protein nusG n=1 T... 74 2e-12 UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 T... 74 2e-12 UniRef50_A9SPI1 Predicted protein n=1 Tax=Physcomitrella patens ... 74 3e-12 UniRef50_A6FV14 Transcription antitermination protein nusG n=2 T... 72 6e-12 UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 T... 71 2e-11 UniRef50_A9BF38 Transcription antitermination protein nusG n=1 T... 70 2e-11 UniRef50_C2NS75 Transcription antitermination protein nusG n=2 T... 70 4e-11 UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella ... 69 1e-10 UniRef50_UPI00016B21AA transcription antitermination factor n=1 ... 67 4e-10 UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 T... 64 2e-09 UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 T... 64 3e-09 UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 T... 64 3e-09 UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 T... 64 3e-09 UniRef50_A3WUF1 Transcriptional antitermination protein, putativ... 62 6e-09 UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 T... 60 2e-08 UniRef50_Q8EUN7 Transcription antitermination factor n=1 Tax=Myc... 60 3e-08 UniRef50_A4YU22 Transcription antitermination protein nusG n=1 T... 60 3e-08 UniRef50_Q4A648 Transcription antitermination protein n=1 Tax=My... 60 3e-08 UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Ag... 60 4e-08 UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 59 7e-08 UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus... 59 9e-08 UniRef50_Q98R28 TRANSCRIPTION ANTITERMINATION PROTEIN n=1 Tax=My... 59 9e-08 UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 T... 59 1e-07 UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobac... 59 1e-07 UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostri... 57 4e-07 UniRef50_C8PLY0 Transcription antitermination protein, NusG fami... 56 5e-07 UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 T... 56 5e-07 UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitro... 56 5e-07 UniRef50_UPI0001BCE1C5 transcription antitermination protein Nus... 56 6e-07 UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacte... 56 7e-07 UniRef50_UPI0001692BF2 putative transcription antiterminator n=1... 56 7e-07 UniRef50_B6TZG2 Transcription termination factor nusG family pro... 55 7e-07 UniRef50_Q10BA7 Os03g0825500 protein n=3 Tax=Oryza sativa RepID=... 55 1e-06 UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerot... 54 2e-06 UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomon... 54 2e-06 UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacte... 54 2e-06 UniRef50_Q7NAK3 NusG n=2 Tax=Mycoplasma gallisepticum RepID=Q7NA... 54 3e-06 UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteri... 54 3e-06 UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 T... 53 4e-06 UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobac... 53 4e-06 UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Cl... 53 4e-06 UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacteriu... 52 7e-06 UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 T... 52 7e-06 UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanell... 52 1e-05 UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomon... 52 1e-05 UniRef50_B9HCH7 Predicted protein n=1 Tax=Populus trichocarpa Re... 52 1e-05 UniRef50_Q1Q029 Similar to transcription antitermination protein... 51 2e-05 UniRef50_A3AP86 Putative uncharacterized protein n=1 Tax=Oryza s... 51 2e-05 UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1... 49 8e-05 UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoeki... 49 9e-05 UniRef50_C5B0S5 Putative uncharacterized protein n=1 Tax=Methylo... 49 1e-04 UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 T... 48 1e-04 UniRef50_UPI0000382CEE COG0250: Transcription antiterminator n=1... 48 1e-04 UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria Rep... 48 1e-04 UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 T... 48 2e-04 UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verru... 48 2e-04 UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 T... 48 2e-04 UniRef50_B8IEU5 Putative uncharacterized protein n=1 Tax=Methylo... 47 2e-04 UniRef50_B1AJM2 Transcription termination/antitermination factor... 47 2e-04 UniRef50_Q94AA3 AT3g09210/F3L24_8 n=6 Tax=rosids RepID=Q94AA3_ARATH 47 3e-04 UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 T... 47 3e-04 UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofu... 47 3e-04 UniRef50_A5FN19 Transcription antitermination protein nusG n=1 T... 46 5e-04 UniRef50_B8KUX9 Transcription termination factor nusG domain pro... 46 7e-04 UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 T... 45 8e-04 UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionale... 45 0.001 UniRef50_Q2GD85 Putative transcription termination/antiterminati... 45 0.001 UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella ... 45 0.002 UniRef50_Q6MDM7 Putative transcription antitermination factor Nu... 45 0.002 UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 T... 44 0.002 UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobiu... 44 0.002 UniRef50_B5HX00 Putative uncharacterized protein n=1 Tax=Strepto... 44 0.002 UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collins... 44 0.002 UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomon... 44 0.002 UniRef50_P75049 Protein MG054 homolog n=2 Tax=Mycoplasma RepID=Y... 44 0.002 UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus... 44 0.003 UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma pro... 44 0.003 UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga... 44 0.003 UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collins... 43 0.005 UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobi... 43 0.005 UniRef50_UPI00016C0B0F transcription antitermination protein Nus... 43 0.006 UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella ... 42 0.006 UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibac... 42 0.009 UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus Rep... 42 0.011 UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonad... 41 0.014 UniRef50_A9NQH7 Putative uncharacterized protein n=1 Tax=Picea s... 41 0.021 UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga... 40 0.025 UniRef50_A4EGG1 Transcriptional antitermination protein, putativ... 40 0.046 UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 ... 40 0.051 UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus S... 39 0.067 UniRef50_A3TRT6 Putative secreted protein n=1 Tax=Janibacter sp.... 39 0.081 UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga... 39 0.089 >UniRef50_P0AA01 Transcription antitermination protein nusG n=217 Tax=Proteobacteria RepID=NUSG_ECOL6 Length = 181 Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/181 (99%), Positives = 181/181 (100%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNME+LFGEVMVPTEEVVEIRGGQRRKS Sbjct: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKS 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD Sbjct: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK Sbjct: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 Query: 181 A 181 A Sbjct: 181 A 181 >UniRef50_P57151 Transcription antitermination protein nusG n=17 Tax=Proteobacteria RepID=NUSG_BUCAI Length = 181 Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 145/180 (80%), Positives = 169/180 (93%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M E+ KKRWYV+QAFSGFE RVA S+REH+KL+ MEDLFGEVMVP++EVVEIRGGQRRKS Sbjct: 1 MHESQKKRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKS 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E KFFPGYVL+QM M D++WHL+R+VP+V+GFIGG SD+P+PISDKEV+ I+NRL+++G+ Sbjct: 61 EYKFFPGYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGN 120 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KPRPKTLFEPGEM+RVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR+TPVELDF QVEK Sbjct: 121 KPRPKTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 Tax=Bacteria RepID=NUSG_PASMU Length = 183 Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 140/176 (79%), Positives = 156/176 (88%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 KKRWYV+QAFSGFEGRVAT+LRE+IKLH MED FGEV+VPTEEVVE G+RRKSERKFF Sbjct: 7 KKRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFF 66 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYVLVQM MND +WHLVRSVPRVMGFIGGT+D+PAPIS +E D I+NRLQ+ +KPR + Sbjct: 67 PGYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHR 126 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F+PGE VRV +GPFADFNG VEEVDYEK RLKVSVSIFGRATPVEL+FSQVEK Sbjct: 127 KEFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEKT 182 >UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=A6W3A4_MARMS Length = 177 Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/175 (69%), Positives = 151/175 (86%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 KRWYVVQA+SG+E V SL E +++ E+ FG+++VPTEEVVEIR G++RKSERKF+P Sbjct: 3 KRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKFYP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLVQM MNDASWHLV+ RV+GFIGGT+D+P+PI+ +E DAI+ R+ DKPRPKT Sbjct: 63 GYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRPKT 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 LFE GE+VRVN+GPFADFNGVVEEVDY+KSR+KV+V IFGR+TPV+L+FSQVEKA Sbjct: 123 LFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEKA 177 >UniRef50_Q87A27 Transcription antitermination protein nusG n=71 Tax=Proteobacteria RepID=NUSG_XYLFT Length = 185 Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 111/184 (60%), Positives = 142/184 (77%), Gaps = 9/184 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 KRWYVV A+SGFE VA +LR+ I ++D FG+V+VP EEVVE+R GQ+R+SE KFFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61 Query: 67 GYVLVQMV---------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 GYVL+Q+ +++ WHLV+ P+VMGFIGGT+DRP PIS E D I+ R+Q Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQD 121 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 +KPRPK LFEPG+MVRV DGPF DF+G+VEEV+YEK+RL+V+V IFGR TPV+LDF Q Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQ 181 Query: 178 VEKA 181 V+K+ Sbjct: 182 VQKS 185 >UniRef50_P65591 Transcription antitermination protein nusG n=84 Tax=Bacteria RepID=NUSG_NEIMA Length = 178 Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/174 (61%), Positives = 136/174 (78%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYVVQA+SGFE V L E I M D FG+++VP E+VV+IR G++ SERK +P Sbjct: 3 KKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKSYP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLV+M M D SWHLV+S PRV GFIGG ++RP PIS +E + I+ ++Q +KP+PK Sbjct: 63 GYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKPKV 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE G+ VRVN+GPFADFNGVVEEV+YE+++L+VSV IFGR TPVEL+FSQVEK Sbjct: 123 EFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEK 176 >UniRef50_B4R8J9 Transcription antitermination protein nusG n=157 Tax=Proteobacteria RepID=B4R8J9_PHEZH Length = 189 Score = 211 bits (538), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 97/176 (55%), Positives = 137/176 (77%), Gaps = 1/176 (0%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 P+ +WY+V A+S FE +VA S+RE + +E+ F E++VPTE+VVEIR G++ SERKF Sbjct: 13 PRHKWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKF 72 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVLV+M M D ++HL+++ P+V GF+G S +P P+S+KEV+ I+ +++ ++P+P Sbjct: 73 FPGYVLVKMEMTDEAYHLIKNTPKVTGFLGSGS-KPIPVSEKEVERIVGAIEEGVERPKP 131 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE GE VRV DGPFA FNG VE+VD E++RL+V+VSIFGRATPVEL++ QVEK Sbjct: 132 TITFEIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEK 187 >UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 Tax=Proteobacteria RepID=C4XIP4_DESMR Length = 187 Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 95/180 (52%), Positives = 129/180 (71%), Gaps = 1/180 (0%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 + E RWY+V +SGFE RV +LRE ++ EV+VPTE+++E+ G+++ S Sbjct: 8 VDEQSNARWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTS 67 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 RKF+PGYV+V+M M+D SWHLV+S+PRV GFIGG ++P P+ D E I++ + + Sbjct: 68 TRKFYPGYVMVKMAMDDNSWHLVQSIPRVTGFIGG-KNQPTPMRDSEAQKILSLMVSRQE 126 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PRPK FE G+ VRV DGPF FNGVVE+V+Y+K +L+VSVSIFGR TPVELDF QV K Sbjct: 127 QPRPKYHFERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >UniRef50_A0Q872 Transcription antitermination protein nusG n=11 Tax=Francisella RepID=A0Q872_FRATN Length = 177 Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 96/176 (54%), Positives = 134/176 (76%), Gaps = 7/176 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ SG+E RV L E+I++ +++ FG ++VPTE VVE++GGQ+RKSERK+FPGY Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK----PRP 124 VL++ ++ +W+LV+SVPRV+ + G+ +P P+S EVD I+ ++ G K PR Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVV-GSKGKPIPLSKAEVDRILGFVE--GSKSTVEPRL 119 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + + GE+VRV +GPF DF GV+EEV+YEKSRL+V+VSIFGR+TPVEL+FSQVEK Sbjct: 120 RKSYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 Tax=cellular organisms RepID=Q01SW9_SOLUE Length = 239 Score = 191 bits (486), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 126/178 (70%), Gaps = 1/178 (0%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E+ K+WY++ +SGFE +V SLR D G++++PTEEVVE+R G++ S+R Sbjct: 62 ESSAKKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKR 121 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 +PGYVLV+M MNDA WH V++ PRV GF+GG + P P+S EV++I+ R ++P Sbjct: 122 LVYPGYVLVEMEMNDALWHEVKNTPRVTGFVGG-GNSPVPLSADEVNSILYRQASSAERP 180 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 RPK FE + VR+ DGPFA+F+G V+EV+ E+ L+V V+IFGRATPVEL+F QVEK Sbjct: 181 RPKMTFEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEK 238 >UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJ02_BDEBA Length = 177 Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 87/174 (50%), Positives = 119/174 (68%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY+V + E ++ E IK ME+ FGE+++P E VVE+ GQ++ RKFFP Sbjct: 3 KKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKFFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ VQM +ND +WHLVR+ +V GF+GGT RP + + EV + ++ V +KPRPK Sbjct: 63 GYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRPKV 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE V V DGPF++F G VEE++ +K++LKV VSIFGR TPVELD+ QVEK Sbjct: 123 KFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176 >UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 Tax=Proteobacteria RepID=Q2LQ92_SYNAS Length = 176 Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 86/171 (50%), Positives = 127/171 (74%), Gaps = 1/171 (0%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYVV +SGFE +V SL+E I+ M+ F ++++P E+VVE+ G+++ S+RKFFPG Sbjct: 4 KWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKFFPG 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+LV+M ++D +WHLV+ P+V GFI G+ ++P+PI DK+V+ + R+ + KP+PK Sbjct: 64 YILVKMELDDDTWHLVKDTPKVTGFI-GSREKPSPIPDKDVELLKTRIDEGTLKPKPKFK 122 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 FE G+ V + DGPF +F+GV++EV EK +L+V VSIFGR TPVELDF QV Sbjct: 123 FEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173 >UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 Tax=Desulfotalea psychrophila RepID=Q6AP83_DESPS Length = 177 Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/173 (52%), Positives = 129/173 (74%), Gaps = 2/173 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++QA SGFE +V +L + IK +ED FG+++VPTE+VVE+ G R+ S +KFFP Sbjct: 3 KQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKFFP 62 Query: 67 GYVLVQMVMNDASWHLVR-SVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 GY+L+ M + D +WH V ++PRV+GF+G + P P+SD+E I+ R+Q+ ++PRPK Sbjct: 63 GYMLINMELTDETWHTVHENMPRVVGFVGDDRN-PMPLSDEEAAKIIGRIQEGSERPRPK 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +F+ GE VRV DGPF++F GVV+EV +K R++V VSIFGR TPVEL+F QV Sbjct: 122 VIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174 >UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE5_HALO1 Length = 189 Score = 185 bits (470), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 87/176 (49%), Positives = 120/176 (68%), Gaps = 2/176 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K +WYVV +G+E RV +L++ +D GE++VPT V+E+ G+R+ S +KFF Sbjct: 16 KFKWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFF 75 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGY+ VQM D+ +HL+R+ P+V GF+GG + P P+ + E+ I N + KPRPK Sbjct: 76 PGYIFVQMEFTDSVYHLIRNTPKVTGFVGGNT--PQPVPESEISVIHNTMSDNHSKPRPK 133 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +FE G+ VRV DGPFA F VEEV +K +L+V V+IFGRATPVELDF+QVEKA Sbjct: 134 VMFEQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEKA 189 >UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 Tax=Sphingomonadales RepID=C8WBL1_ZYMMN Length = 179 Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 125/177 (70%), Gaps = 4/177 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY++ A+SGFE +V ++ + ++ L + VPTE+ VE+R G++ ERK FPG Sbjct: 3 RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCFPG 62 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ---VGDKPRP 124 YVL ++ MN+ +HLV++ P+V GF+ G S +P PISD E + I+N + G K + Sbjct: 63 YVLAKLNMNEDVYHLVKNTPKVTGFL-GFSGKPQPISDAEAEHILNHKAEAEVAGKKAQI 121 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 K FE G+ V+V +GPFA FNGVVE++D++++R+KVSVSIFGRATPVEL+F QVE+A Sbjct: 122 KVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVERA 178 >UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 Tax=Bacteria RepID=A5D5K3_PELTS Length = 175 Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 87/176 (49%), Positives = 126/176 (71%), Gaps = 5/176 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WYVV +SG+E +V +L + I NMED ++VP E+ VEI+ G+++ S+RK F Sbjct: 2 EKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKIF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG-DKPRP 124 PGYVLV+M+M D SW++VR+ P V GF+G S RP P++D E I ++Q+G ++PR Sbjct: 62 PGYVLVEMIMTDDSWYVVRNTPGVTGFVGSGS-RPIPLNDAEARQI---IRQMGVEEPRT 117 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + F GE +RV GPF +F G +EE++ EKS++KV +S+FGR TPVELDF+QVEK Sbjct: 118 RVDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEK 173 >UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 Tax=Firmicutes RepID=B1I1L1_DESAP Length = 178 Score = 171 bits (433), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 77/177 (43%), Positives = 129/177 (72%), Gaps = 4/177 (2%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+W+VV +SG+E +V +L + I+ +MED ++VP E+ +E++GG+R+ S+RK FP Sbjct: 3 KQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKIFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 GYV+V+M+++D S+ +VR+ P V GF+G G +P P++D E + I+++++ GD+PR Sbjct: 63 GYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQME--GDEPRI 120 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + PGE VRV GPF +F G V++V+YEK++++V +S+FGR TP+EL++ Q+EK Sbjct: 121 RIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177 >UniRef50_D1CD65 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=D1CD65_THET1 Length = 201 Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/173 (47%), Positives = 120/173 (69%), Gaps = 3/173 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG+E +V L+ ++ M D +++VPT E +EIR G+R K ++K FPG Sbjct: 29 QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YVLV+M M+DA+W++VR P V GF+ G+ +P P+ +KEV+ I+ R+ + + P+ K Sbjct: 89 YVLVRMRMDDAAWNVVRYTPGVTGFV-GSGTKPTPLDEKEVEKILQRMSE--EPPKVKMS 145 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GE VR+ DGPF DF G V+E++ EK ++KV +SIFGR TPVELDF QVEK Sbjct: 146 LRLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEK 198 >UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 Tax=SAR11 cluster RepID=Q1UZH8_PELUB Length = 176 Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 80/175 (45%), Positives = 127/175 (72%), Gaps = 1/175 (0%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K WY+VQ+ S FE +VA ++E + + D E++VPT +V E++ G+R + ++K+FP Sbjct: 2 KNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVL++ M++ +HL++++ RV GF+G + P P+SDKE++ I+ +++ +P+ Sbjct: 62 GYVLIKSEMDNDLYHLIKNLKRVSGFLG-SKGIPVPVSDKEIEKILGQIKDGVAQPKSGI 120 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE V+V DGPFA F+G+VE++D EKSRLKVSVSIFGR TPV+L+++QVEKA Sbjct: 121 EYSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKA 175 >UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=B9KYX2_THERP Length = 198 Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 119/172 (69%), Gaps = 3/172 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +SG+E +V +L ++ ++ D EV++P +E +EIRGGQR +RK FPGY Sbjct: 28 WYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPGY 87 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 VLV+M+++D SWH+VR+ P V GF+ G +RP P+ E +AI+ + ++P+ + Sbjct: 88 VLVRMILDDESWHVVRNTPGVTGFV-GVGNRPVPLDRAEAEAIIRGAK--AEQPKVRMTL 144 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 PG++VR+ DGPF DF GVV+EVD EK +++V VS FGR TPV LDF QVE+ Sbjct: 145 LPGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196 >UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=A3EVT3_9BACT Length = 184 Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/176 (45%), Positives = 117/176 (66%), Gaps = 3/176 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 KK WYV+ ++GFE RV TS+ E + L ++ D+ G+V+VP + V E++ G+++ S RK F Sbjct: 10 KKNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVF 69 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIG-GTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 PGYVLV+M + + + + P+V GF+G GT+ P P+S +EV + +R++ P P Sbjct: 70 PGYVLVEMEPTEEAIQFILATPKVTGFLGNGTT--PIPMSSREVSELFDRIESGTAMPSP 127 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F E VR+ DGPF F+G++ EVD + +LKV VSIFGR TPVELDF QVE+ Sbjct: 128 SQHFSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVER 183 >UniRef50_B3T6R2 Putative transcription termination factor nusG n=2 Tax=prokaryotic environmental samples RepID=B3T6R2_9ZZZZ Length = 272 Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 70/176 (39%), Positives = 121/176 (68%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + P +WY++QA+SG+EGRV ++RE +++ +E L E+ +P+E+++ + G++RK + Sbjct: 92 QNPNVKWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQ 151 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K+FPGYVL+ M + WHL+ +V RV GFIGGT +P P+ +KE++ I +++ + + Sbjct: 152 KYFPGYVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQK 211 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + G+ V + +G F +F+G ++EV+ E+ +LKV VSIFGR TPVE++F V Sbjct: 212 ATEDEYSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENV 267 >UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 Tax=Bacteria RepID=NUSG_BACHD Length = 178 Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 83/179 (46%), Positives = 124/179 (69%), Gaps = 7/179 (3%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K WYVV +SG+E +V T+L + ++ +M D VMVP EE E++ G+ ++ RK F Sbjct: 2 EKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKVF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVG--DK 121 PGYVLV+MVM D SW++VR+ P V GF+G G +P P+ +EVDAI L+Q+G ++ Sbjct: 62 PGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAI---LRQMGMQEE 118 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + + F+ E V+V +GPFA+F G +EE+ +K +LKV V++FGR TPVEL+F+Q+EK Sbjct: 119 RQVEIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEK 177 >UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 Tax=Rickettsia RepID=NUSG_RICBR Length = 190 Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 114/179 (63%), Gaps = 3/179 (1%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 SE K+WYV+ SG E R+ + E I M D F +++VP V E++ + K E Sbjct: 13 SEKDTKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVE 72 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 +K P Y+L++M M D SWHLV+++P V GF+G + P +++ E+ I RL+ + Sbjct: 73 KKLMPSYILIKMNMTDKSWHLVKNIPGVTGFLGSKT-TPKALTESEIQNI--RLETEAKE 129 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + L+E GE+V V +GPF F G VEEVD EK+RLKVSVSIFG+ATP+EL F+QV+K Sbjct: 130 AKDAKLYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188 >UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=C8XBG0_NAKMY Length = 306 Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/183 (44%), Positives = 113/183 (61%), Gaps = 10/183 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +++G+E +V T+L IK +MED ++ VPTEEV EI+ GQR++ +RK +PG Sbjct: 123 EWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPG 182 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN-----RLQQVGDKP 122 Y+LV+M + D SW VR+ P V GF+G T+ +P+ ++ EV I+ + V P Sbjct: 183 YILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTP 242 Query: 123 -----RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 R + F GE V V DGPFA + EV+ + +LKV VSIFGR TPVEL FSQ Sbjct: 243 GSAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQ 302 Query: 178 VEK 180 V K Sbjct: 303 VAK 305 >UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 Tax=Bacteria RepID=D0MHN6_RHOM4 Length = 186 Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 76/175 (43%), Positives = 123/175 (70%), Gaps = 2/175 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 ++WYV++ FSG E +V L I+ ++D G++++PTE V E+RGG++R ER FFP Sbjct: 11 RKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFFP 70 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK-PRPK 125 GY+L++ V++ HL+ ++P V+GF+ G+ D+P P+ EV I+ ++ + + +P+ Sbjct: 71 GYILIEAVLDRELQHLIANMPSVVGFL-GSGDQPTPLRPDEVRRILGKVDEAREMGEQPE 129 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+PG++VR+ +GPF +F GVVEEV +K +LKV VSIFGR TP+E+D+ QVE+ Sbjct: 130 IPFKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184 >UniRef50_B3E158 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B3E158_METI4 Length = 201 Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 9/181 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E +V +L + IK M+DL GEV++P E V E+R G+R + RK +PG Sbjct: 22 QWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYPG 81 Query: 68 YVLVQMVMNDAS-------WHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 YV +Q+ + D+S W+ VR V+GF G D P P+ ++V+ ++ ++Q+ Sbjct: 82 YVFLQIQLRDSSGKLIERAWYFVRETSGVIGFADG--DNPLPMPREQVEGMLRQIQERTS 139 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 PKT+F G+ V+V DGPF + GV+EEVD E+ +L+VSV+IFGR+TPVEL++ QVEK Sbjct: 140 SALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199 Query: 181 A 181 A Sbjct: 200 A 200 >UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 Tax=Bacteria RepID=Q0AUG6_SYNWW Length = 203 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 115/172 (66%), Gaps = 2/172 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVV +SG+E ++ L + ++ NM+D EV++P E+ VE + G+R+ + ++ FPGY Sbjct: 33 WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V+V M+M+D SW++VR P V GF+G S +P P+ +E+D I R + +K Sbjct: 93 VIVNMIMDDDSWYVVRHTPGVTGFVGSGS-KPIPLHQEEIDKI-RRQMGLMEKKTMIIDI 150 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 E GE +RV GPFA+F GVV E+ EK +++V++S+FGR TPVELD+ Q+EK Sbjct: 151 EIGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEK 202 >UniRef50_D1BP79 Transcription antitermination protein nusG n=5 Tax=Veillonellaceae RepID=D1BP79_VEIPT Length = 178 Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 76/175 (43%), Positives = 116/175 (66%), Gaps = 2/175 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYV+ +SG+E +V T+L ++ ++D+ ++VP E+ ++ + G ++ +RK FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLV+M +ND SW++VR+ P V GF+G + +P P+SD EV+ I+ + Q + KP Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSAT-KPVPLSDSEVEHIL-KSQGLDKKPTINV 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 E GE VR+ G F D GV+ E++ EK LK+SV +F R T VEL+FSQVEKA Sbjct: 123 DVEVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEKA 177 >UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2W0_ACIFD Length = 243 Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 5/177 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVV +SG+E RV +L I+ +ED EV +P E+V E++ G+R K +RK FPGY Sbjct: 68 WYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPGY 127 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK--- 125 VLV+ M+D W +R+ P + F+G S +P P+S KEV+A+ + +P+P+ Sbjct: 128 VLVRAEMDDEVWSAIRNTPGITSFVGSGS-KPVPLSRKEVEAMFSFATPEELRPQPQRRS 186 Query: 126 -TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 FE GE VRV +GP ADF G V EV+ ++ +LKV +IFGR TPVELDF+QV KA Sbjct: 187 TQEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSKA 243 >UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 Tax=Epsilonproteobacteria RepID=NUSG_HELPJ Length = 176 Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 112/173 (64%), Gaps = 3/173 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK-SERKFFPG 67 WY +Q +SG E V ++ H++ D E++VPTE+++E+ + K ER +PG Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV +++ ++ WH ++S+PRV FIG + +P P+S+ ++ I+ ++ P+PK Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIG-ENKKPTPLSEADIGHILEKMNNRA-APKPKIF 121 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE GE+VRV +GPFA+F VEE D E +LK++VSIFGR TP+E+ +SQVEK Sbjct: 122 FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEK 174 >UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCJ0_9DELT Length = 176 Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 75/172 (43%), Positives = 117/172 (68%), Gaps = 5/172 (2%) Query: 12 VQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLV 71 + FSG+E V SL + IK + +E+ F +++VP+E+V+E RG ++ K RKFFPGY+ V Sbjct: 1 MNTFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFV 60 Query: 72 QMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ--QVGDKP--RPKTL 127 +M + +WHLV++ P+V GF+ + P P+S +E+D ++ + + QV ++ P Sbjct: 61 RMRLTKPAWHLVKNTPKVSGFL-SSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDID 119 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ VRV G FA+F+G VEEV+ EK ++K+SVSIFGR T VE+DFS+VE Sbjct: 120 YSVGDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171 >UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU17_RUBXD Length = 176 Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 115/175 (65%), Gaps = 2/175 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYVV +SG E +V +L I+ ++ FGE+ +PTE+V+EI+ G++ + + FP Sbjct: 2 KKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKPRPK 125 GY+LV + MND +W ++R P V + G+ D+P P+S EV+ +++ + + +K + Sbjct: 62 GYILVNVEMNDDTWRVIRQTPGVTQIV-GSGDKPTPLSRAEVERLLHPEEPEKREKVKAT 120 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ GE VRV GP +DF G + +++ ++S++KV VSIFGR TPVEL F+QV K Sbjct: 121 VDFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAK 175 >UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBR2_9BACT Length = 193 Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 71/181 (39%), Positives = 117/181 (64%), Gaps = 9/181 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+V+ SG E +V + ++ + ++ E +PTE+V E+R G++ + RK FPG Sbjct: 14 QWFVIHTLSGHENKVRDKILRQLQTGDQVPVY-EAFIPTEKVAEVRQGKKTTTTRKLFPG 72 Query: 68 YVLVQM-------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 Y+ V+M ++N+ +W+ +RSV V+GF+GG ++P +++ EV+ IM Q Sbjct: 73 YIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGG-DNKPTALTESEVEDIMRPAQAGAP 131 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + +PK FE GE+VR+ DG F +F G ++E+D E+ +LK+ VSIFGR+TPVEL+F QVE+ Sbjct: 132 EVKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVER 191 Query: 181 A 181 Sbjct: 192 T 192 >UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 Tax=Elusimicrobia RepID=B2KEU4_ELUMP Length = 178 Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 117/180 (65%), Gaps = 4/180 (2%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSE K WY+V +G E +V + ++ N D +V+VPTE+VVE++ ++ + Sbjct: 1 MSE--NKAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQR 58 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 +RKFFP YVLV+M + ++ +R+V V GF+G + P P+ ++E+ AI++ Q Sbjct: 59 KRKFFPSYVLVEMDLTSEAYWFIRNVSGVTGFLGDPN--PVPLPEEEIAAILDLTQPGSG 116 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KP+ FE GE VR+ +GPF F GVV+EV+ +K++LK+ V++F R+TPVELDF QVEK Sbjct: 117 KPKHVIEFEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEK 176 >UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6U2_THEAS Length = 181 Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 2/177 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K+RWY+VQ +SG+E +V +L + I MED V+VP EE V ++ G+ ++ RK F Sbjct: 5 KRRWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVF 64 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRP 124 P YVLV+M+M+D SW++VR P V GF+ G+ + P P++D+EV +M ++ D KP+ Sbjct: 65 PSYVLVEMIMDDQSWYVVRHTPGVTGFV-GSGNHPIPLTDREVAEVMGKIGLPADRKPKV 123 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + E G+ VRV GPF G V EVD +K R++ SV++FGR T E +EK Sbjct: 124 ELDIEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKV 180 >UniRef50_P35872 Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 Length = 184 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 9/181 (4%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRKSERKFFPG 67 WY V G E + +L + IK ++D +V++PTEEVVE+R GG++ +K FPG Sbjct: 5 WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPG 64 Query: 68 YVLVQMVMNDA-----SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK- 121 Y+ +QM + D +W +VR P + GF+G RP P+S EV I+ +G K Sbjct: 65 YLFIQMDLGDEEEPNEAWEVVRGTPGITGFVG-AGMRPVPLSPDEVRHILEVSGLLGKKE 123 Query: 122 -PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P+ + F G+ VRV GPFADF G V E++ E+ ++KV V+IFGR TPVELDFSQV K Sbjct: 124 APKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 183 Query: 181 A 181 A Sbjct: 184 A 184 >UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212 Tax=Bacilli RepID=NUSG_STAEQ Length = 182 Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/181 (40%), Positives = 116/181 (64%), Gaps = 6/181 (3%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E KRWY V +SG+E +V +L + ++ NM + V++P EE +++ G+ +K + Sbjct: 4 EVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVK 63 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGD 120 K FPGYVLV+++M D SW++VR+ P V GF+G G +P P+ +EV I L+Q+G Sbjct: 64 KTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFI---LKQMGL 120 Query: 121 KPRPKTL-FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 K + + + GE VR+ GPFA+ G V+E++ +K +L V V +FGR TPVE++F Q+E Sbjct: 121 KEKTIDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIE 180 Query: 180 K 180 K Sbjct: 181 K 181 >UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B1ZPC3_OPITP Length = 192 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/180 (39%), Positives = 109/180 (60%), Gaps = 9/180 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+ + SG E +V + + K ++D EV++PTE V E++GG++ RK +PG Sbjct: 12 QWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYPG 71 Query: 68 YVLVQMVMN-------DASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 YV +QM + + W+ V+ V V+GF+GG DRPA + E+D I R++ Sbjct: 72 YVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVGG--DRPAALRQSEIDEIRARIEAANG 129 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 K PK + GE V++ DG FA G ++E+D E+ +LKVSVSIFGR TPVEL++ QV++ Sbjct: 130 KEVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189 >UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q133_9BACT Length = 182 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 116/179 (64%), Gaps = 7/179 (3%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+V++ S E +V +L E I+ ME L V+VP+E++ E++GG++R S+RK +P Sbjct: 3 KEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKIYP 62 Query: 67 GYVLVQMVMNDAS------WHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 GY++V++ +++ W +R FIGG S +P P++ EV+ +++ L Q + Sbjct: 63 GYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQS-KPVPMTKYEVEKLLSDLDQKEE 121 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +PR K F GE VR+ +GPF +++G+VEEV R+KV +++FGRATPVEL++ QVE Sbjct: 122 RPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180 >UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 Tax=Propionibacterium acnes RepID=Q6A6K1_PROAC Length = 303 Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 76/187 (40%), Positives = 108/187 (57%), Gaps = 15/187 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ +SG E +V +L ++ NMED E +VPTEEVVEIR G RR R + PG Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM-----------NRLQ 116 YVLV+M + D SW +VR P V GF+G ++ P P++ EV ++ N + Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQST-TPIPLTFDEVVKMLTPSVVARVSRENADK 235 Query: 117 QVGDKPRPK---TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 K +PK +E GE V++ DGPFA + E++ R+K V I GR+TPV+L Sbjct: 236 TSSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDL 295 Query: 174 DFSQVEK 180 +F+Q+EK Sbjct: 296 EFNQIEK 302 >UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 Tax=Actinomycetales RepID=NUSG_MYCLE Length = 228 Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 109/193 (56%), Gaps = 25/193 (12%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +++G+E +V +L ++ ++ D +V VPTEEV EI+ GQRR RK PGY Sbjct: 39 WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP---- 124 +LV+M + D SW VR+ P V GF+G TS RP+ ++ +D ++ L G + Sbjct: 99 ILVRMDLTDDSWAAVRNTPGVTGFVGATS-RPSALA---LDDVVKFLLPSGSAKKDAKGA 154 Query: 125 -----------------KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 + +E GE V V DGPFA + EV+ E+ +LKV VSIFGR Sbjct: 155 VSTAAAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGR 214 Query: 168 ATPVELDFSQVEK 180 TPVEL FSQV K Sbjct: 215 ETPVELTFSQVSK 227 >UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 Tax=Firmicutes RepID=Q1WST1_LACS1 Length = 186 Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E+ +K+WYV+ ++G+E +V +L MED V+VP EE E + K E+ Sbjct: 6 ESVEKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEK 65 Query: 63 -KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVG 119 K FPGYVLV+MVM D SW++VR+ P V GF+G G+ +PAP+ D+E++ I L ++G Sbjct: 66 LKTFPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHI---LHELG 122 Query: 120 DKPRPKTL-FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R E G+ V + DG F+ G + E+D EK +LKV + +FGR T EL++ QV Sbjct: 123 ISSRHSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQV 182 Query: 179 EK 180 +K Sbjct: 183 DK 184 >UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 Tax=Leptospira RepID=B0SAG6_LEPBA Length = 184 Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/184 (40%), Positives = 119/184 (64%), Gaps = 8/184 (4%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M ++ K+WYV+Q +SG E +V T++ + ++ +ED V +P+ EV E++ G+++ + Sbjct: 1 MGDSLDKKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVT 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 ++K PGYVLV+M M D ++++P V F+GG P P+S +D I N VG+ Sbjct: 61 KKKLMPGYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLS---LDEIKNLFSDVGN 117 Query: 121 -----KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 RP+ LF+ GE +++ DGPFA+F G+V+E+ +K RL+V V IFGR+TPVELD+ Sbjct: 118 VESEEVSRPRFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDY 177 Query: 176 SQVE 179 QV+ Sbjct: 178 LQVK 181 >UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 Tax=Clostridiales RepID=A6LPP9_CLOB8 Length = 181 Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 73/176 (41%), Positives = 112/176 (63%), Gaps = 9/176 (5%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + RWYVV +SG+E +V +L + I+ N+E L ++ VP EEVVE + G+++ S +K F Sbjct: 12 RARWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKF 71 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYVLV+M+M D +W++VR+ V GF+G S +P P+SD+EV+++ G P Sbjct: 72 PGYVLVKMLMGDEAWYVVRNTRGVTGFVGPGS-KPVPLSDEEVESM-------GVLEVPV 123 Query: 126 TL-FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + E GE +R+ GP D ++E+ +K ++K V +FGR T ELDF+QVEK Sbjct: 124 EIDLEVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEK 179 >UniRef50_A6CA55 Transcription antitermination protein nusG n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CA55_9PLAN Length = 194 Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 114/184 (61%), Gaps = 6/184 (3%) Query: 2 SEAP----KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQR 57 SE+P K+ WYV++ S E + +L IK +E+ FGE+++PTE+VVE +GG++ Sbjct: 11 SESPEGSEKRLWYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKK 70 Query: 58 RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 R ERK +PGY+++Q+ +ND SW+LVRS V F G + +P P+ + E+ ++ R + Sbjct: 71 RVFERKLYPGYLMIQVELNDDSWYLVRSTNGVGDFTGA-AGKPIPMQEHEIARMLGREES 129 Query: 118 VGDKP-RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + P + K F+ G++V+V D F F G ++ VD ++ V + IF R TP EL++ Sbjct: 130 KEETPVKIKLDFQVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYW 189 Query: 177 QVEK 180 Q+EK Sbjct: 190 QIEK 193 >UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 Tax=Brachyspira RepID=C0QWX1_BRAHW Length = 195 Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 109/190 (57%), Gaps = 10/190 (5%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +S+ +WY+V G+E +V + + K + M DL ++ +P+E V + G++ Sbjct: 5 ISDIKDYKWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSK 64 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR-------PAPISDKEVDAIMN 113 E F+PGYVLV+MVMNDA+ +VR P V GFIG + P P+S+ +V I Sbjct: 65 EEFFYPGYVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFE 124 Query: 114 RLQ---QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + + G F+ GE V+V DGPF NG++E ++ +K R+ V + IFGR+TP Sbjct: 125 NREDKSKTGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTP 184 Query: 171 VELDFSQVEK 180 EL+FS+V+K Sbjct: 185 TELEFSKVKK 194 >UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9H7_PLALI Length = 204 Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 109/174 (62%), Gaps = 3/174 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV++ S E + +L I+ +E FGE+++PTE+VVE + G+++ E K +PGY Sbjct: 31 WYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLYPGY 90 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP--KT 126 ++VQM++ND +W++VR+ V F G++ +P P+ D E+ ++ + +Q + P K Sbjct: 91 LMVQMILNDDTWYIVRTTGGVGDFT-GSAGKPTPMQDHEIARMLQKQEQKQESAAPAMKI 149 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G++V++ +G F F G ++ +D ++ V V IFGR+TPVEL++ Q E+ Sbjct: 150 EFAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203 >UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 Tax=Synergistaceae RepID=C9M8Z2_9BACT Length = 185 Score = 135 bits (339), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 111/179 (62%), Gaps = 2/179 (1%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E +W+ VQ +SG+E +V +L + I N ED V+VP E+VV ++ G+ ++ R Sbjct: 7 EQANVQWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSR 66 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV-GDK 121 K FP YVLV+M+M+D SW++VR P V GF+G + P P+SD+EV ++ ++ ++ + Sbjct: 67 KLFPSYVLVEMIMDDQSWYVVRHTPGVTGFVGAGA-HPLPLSDEEVRDVLVKVGELEAET 125 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P+ + G+ VRV GPF GVV +V+ ++K +S+FGR T E++ +++E+ Sbjct: 126 PQIVVECQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELER 184 >UniRef50_B3EL56 Transcription antitermination protein nusG n=8 Tax=Chlorobiaceae RepID=B3EL56_CHLPB Length = 193 Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 106/172 (61%), Gaps = 1/172 (0%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY ++ +SG E +V + ++ +ED +V VP E+ VE+R G++R + FPG Sbjct: 19 RWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFPG 78 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YVL++ +++ + +L+ +P VMGF+ G +D P P+ EV+ I+ V + + Sbjct: 79 YVLIEAILDKQTKNLIMDIPSVMGFL-GVNDIPTPLRPDEVEKILEPESTVEQRSVVEAP 137 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F G+ V+V DGPF+ GVV +V E+ ++KV +S FGR+TP ELDFSQV+ Sbjct: 138 FRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVK 189 >UniRef50_B0A697 Transcription antitermination protein nusG n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A697_9CLOT Length = 179 Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 114/181 (62%), Gaps = 6/181 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRK 59 MSE + +WYVV +SG E +V ++ +K MED +V+VPTE+V+E + G+ + Sbjct: 1 MSEIQEAKWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKV 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 +RK +P YVL+QM++ D SW++VR+ V GF+G S +P P+S++EV ++ L ++G Sbjct: 61 RQRKIYPSYVLIQMIITDESWYIVRNTKGVTGFVGPGS-KPVPLSEEEVKSMGIDLDKIG 119 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA-TPVELDFSQV 178 +K +T E GE+V V DG F +GVV+E+D + ++K+SV+ +ELD + Sbjct: 120 EK---RTEIEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSI 176 Query: 179 E 179 E Sbjct: 177 E 177 >UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RNN9_ACIFE Length = 191 Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 111/186 (59%), Gaps = 13/186 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K WYV+ +SG+E +V +L I ME+ +V+VP + V+ + +++ RK F Sbjct: 4 QKHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVF 63 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP- 124 PGYVL++M+++D +W+ VR+ P V GF+ GT +P P+SD+EV+ I+ + GDK Sbjct: 64 PGYVLIEMIVDDRTWYAVRNTPGVTGFV-GTGTKPIPLSDREVERILGAQPKEGDKAEAA 122 Query: 125 -KTLFEP----------GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 K + EP + VR+ F D G V E++ E+ ++KV V +FGR TP+E+ Sbjct: 123 GKAVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEV 182 Query: 174 DFSQVE 179 F+QVE Sbjct: 183 KFTQVE 188 >UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLA2_9ACTN Length = 184 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 8/179 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI--RGGQRRKS--ER 62 KRWYV+ +SG+E +V L ++ + ++D +V P E V E+ RG + S E Sbjct: 3 KRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTKEV 62 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 KF+PGYVLV+M ++D +W +VR+ P V GF+G +P+P+ +E + +M R D Sbjct: 63 KFYPGYVLVRMELDDNTWSVVRNTPGVTGFLG-VDGKPSPLRREEFNKMMRRSGGKADAT 121 Query: 123 ---RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R T E G+ V V GP ADF+G+V EV+ E ++KV ++IFGR TPVEL Q+ Sbjct: 122 TLKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180 >UniRef50_O83264 Transcription antitermination protein nusG n=4 Tax=Treponema RepID=NUSG_TREPA Length = 185 Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 73/183 (39%), Positives = 117/183 (63%), Gaps = 12/183 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLR---EHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 K WY++ FSG E RV ++R EH ++ ++ ++ +P E + E++ G++R RK Sbjct: 3 KEWYILHTFSGREARVERAVRMLVEHARIPT--NVIFDIKIPEELLTEVKDGKKRVVRRK 60 Query: 64 FFPGYVLVQMVMNDASWHLV----RSVPRVMGFIGGTSD-RPAPISDKEVDAIMNRLQQV 118 FFPGY+LV+M + + W +V R +P V GF+G + + +P +S E I+ + ++ Sbjct: 61 FFPGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEI 120 Query: 119 -GDK-PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 GD+ PR F G+ VR+ +GPFA F+G VEEV E+++++V+V+IFGRATPVEL+ Sbjct: 121 KGDRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELV 180 Query: 177 QVE 179 QVE Sbjct: 181 QVE 183 >UniRef50_P36265 Transcription antitermination protein nusG n=48 Tax=cellular organisms RepID=NUSG_SYNY3 Length = 205 Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 107/184 (58%), Gaps = 13/184 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRKSERKFFP 66 W+ VQ SG E RV +L + I ++ D +V +P +V+IR G R + E K FP Sbjct: 22 HWFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFP 81 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----------PAPISDKEVDAIMNRLQ 116 GYVL++M+M+D +W +V++ P V+ F+G R P P+S EV+ I + Sbjct: 82 GYVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVD 141 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + +P K E G+ + V GPF DF G V EV E+S+LK +SIFGR TPVEL+F+ Sbjct: 142 E--QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFT 199 Query: 177 QVEK 180 QVEK Sbjct: 200 QVEK 203 >UniRef50_B0S060 Transcription antitermination protein nusG n=5 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S060_FINM2 Length = 193 Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 4/177 (2%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A + +WYVV +SG EG+V ++ + ++ D EV+VPTEE V GG ++ ERK Sbjct: 20 AKEGKWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERK 79 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV V+M + D SW+LVR+ V GF+G S +P +S+KE+ + Q K Sbjct: 80 IFPGYVFVKMTITDVSWYLVRNTRGVTGFVGPES-KPVAVSEKEIQKFALKNQSYSKKEI 138 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V + G F+D G++EE++ EK+ KV +S+FGR T VE+ F +EK Sbjct: 139 DVNV---GDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEK 192 >UniRef50_A7BC06 Transcription antitermination protein nusG n=2 Tax=Actinomyces RepID=A7BC06_9ACTO Length = 256 Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 104/182 (57%), Gaps = 11/182 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +SG E +V +L + I NMED V VP E V+E RG +++ PGY Sbjct: 73 WYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHVRIPGY 132 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM--NRLQQVG----DKP 122 +V M N+AS+ +V+ P V GF+G + P P+S EV ++ N L++ D+P Sbjct: 133 AIVCMDFNEASYRVVKETPAVTGFVGDQHN-PVPLSIDEVVMLLTPNVLEEAAEAAKDQP 191 Query: 123 RP----KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 P +T FE GE+V V DGPF + + E+ E +LKV V+IF R TP+EL F QV Sbjct: 192 APVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELGFDQV 251 Query: 179 EK 180 EK Sbjct: 252 EK 253 >UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6N2_GEMAT Length = 181 Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 5/175 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLH--NMED-LFGEVMVPTEEVVEIRGGQRRKSERKF 64 RWY +Q SG E +V ++ I + ED L + +VPT++VVEI+ G++ ERK Sbjct: 5 RWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVERKI 64 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP-R 123 FPGYVLV+MV + + H + ++ V+ F+G D P P+ D EV ++ + + P R Sbjct: 65 FPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKD-PMPLRDDEVRRLLGQADPADETPVR 123 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + F G+ V + +GPFADFNG VEE+ +K +++VSVS+FGR T VELD+ Q+ Sbjct: 124 EEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQL 178 >UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETZ5_AMOA5 Length = 186 Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 111/179 (62%), Gaps = 6/179 (3%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV++ SG E V L ++ ++D ++++P+E++ E+R G+R+ ER FFPG Sbjct: 6 KWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFPG 65 Query: 68 YVLVQMVMNDAS-WHLVRSVPRVMGFIG----GTSDRPAPISDKEVDAIMNRLQQVG-DK 121 Y+++ ++D H ++ +P +GF+G +S +P P+ +KE++ I+ R+ ++ D Sbjct: 66 YLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAEDD 125 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + F GE V++ DGPF+ F G ++EV E+ +L V V IF R TP+EL ++QVEK Sbjct: 126 NGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVEK 184 >UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=C4Z2Q9_EUBE2 Length = 178 Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 110/173 (63%), Gaps = 2/173 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYVV +SG+E +V ++ + ++ N+ D EV+VP E VVEI+ G ++ +++K FPG Sbjct: 5 KWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPG 64 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRPKT 126 YVLV+MVMND SW++VR+ V GF+G S +P P++ E+ + L++ + KP + Sbjct: 65 YVLVKMVMNDDSWYVVRNTRGVTGFVGPGS-KPVPLTPTEIKNLGISLEEEQEVKPVIQF 123 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V + G + D G + ++ K L ++V +FGR TPVE+DF+ V+ Sbjct: 124 AGKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176 >UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 Tax=Chlorobiaceae RepID=B3QYK9_CHLT3 Length = 203 Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY V+ +SG E +V L + I + D +V +P E VE++ G+++ + FPG Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YVL++ V++ + +LV P V+GF+G D P P+ EV ++ Q++ K K Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLG-VGDEPTPLRPDEVKRLLEPEQEIERKMVTKAP 147 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 FE G V++ DGPF GV++EV+ EK ++KV ++ FGR+TP E+DFSQV+ Sbjct: 148 FEVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVK 199 >UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQP9_9FIRM Length = 206 Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 105/167 (62%), Gaps = 4/167 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWYV+ +SG+E +V +L + M+D ++++P + E++ G+++ RK FPG Sbjct: 35 RWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPG 94 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+L+QM +ND SW++VR+ P V GF+G T+ +P P+SD+E I+ + K KT Sbjct: 95 YLLIQMEVNDRSWYVVRNTPGVTGFVGTTT-KPIPLSDEEAKRIIEGKDK---KQTAKTD 150 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 + G+ +++ GPFAD + VV +V ++S++K +S FG T +EL+ Sbjct: 151 AKVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELE 197 >UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLI3_9PLAN Length = 294 Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 108/174 (62%), Gaps = 4/174 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+++ S E + +L +K+ +E F EVMVPTE++VE + G+++ ++RK +PGY Sbjct: 120 WYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYPGY 179 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL--QQVGDKP-RPK 125 ++V M +ND +W LVR + F G + RP P+ EV+ I ++ ++ G++P + Sbjct: 180 IVVHMAINDDTWFLVRETGGIGDFTGA-AGRPTPMLAHEVERITKKVEDEETGEEPVKTN 238 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F+ G+ VR+ +G F +F G VE +D R+ V ++IFGR TPVE++ Q+E Sbjct: 239 IRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQME 292 >UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 Tax=Clostridiales RepID=B6G0A9_9CLOT Length = 180 Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 11/185 (5%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRK 59 MSE + +WYVV +SG E +V ++ + ME++ V+VPTE VVE G + Sbjct: 1 MSELQEAKWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKI 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL--QQ 117 +RK +P YVL++M++ D SW++VR+ V GF+G S +P P+S++EV A+ L Q+ Sbjct: 61 RQRKVYPSYVLIKMIITDESWYVVRNTKGVTGFVGPGS-KPVPLSEEEVIAMGIELPAQE 119 Query: 118 V--GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 V GD FEPG++V++ +G FA G VEEV+ EK +K+ IFGR +PV + Sbjct: 120 VVGGD-----VDFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGI 174 Query: 176 SQVEK 180 +EK Sbjct: 175 QSIEK 179 >UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 Tax=Verrucomicrobiaceae RepID=B2UQY7_AKKM8 Length = 189 Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 103/184 (55%), Gaps = 8/184 (4%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 P ++WYV+ SG E V + K + D V VPTE + E+R G++ + K Sbjct: 7 PHEQWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKL 66 Query: 65 FPGYVLVQM-------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 FPGYV M +N W+ ++ + V+ I G+ + P P+ +EV+ ++ L Sbjct: 67 FPGYVYANMYLLEADGTLNKDLWYFIQQIDGVIS-IAGSRNAPLPMRKREVEDLLPLLDA 125 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 RPK F G+ VRV +GPF G +EE+D EK +L+VSVSIFGRATPV+L++ Q Sbjct: 126 EAVAARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQ 185 Query: 178 VEKA 181 VEKA Sbjct: 186 VEKA 189 >UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=A4XLK3_CALS8 Length = 175 Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 117/177 (66%), Gaps = 9/177 (5%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + +WYVV + G+E +V +L + I+ N+ D ++ +PTE V EI+ G++ E+K F Sbjct: 5 RAKWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKF 64 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P YVL++ VM++ W+ +R+V V GF+G S +P P++D+E++A+ + ++V + Sbjct: 65 PSYVLIKAVMDNDIWYTIRNVRGVTGFVGPES-KPTPLTDEEIEAMGIKEEEVVE----- 118 Query: 126 TLF--EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +F E G+ V++ GPFADF G V +++ E+ ++KV +++FGR TPVE D+ QVEK Sbjct: 119 -VFDIEVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174 >UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 Tax=Actinobacteria (class) RepID=B0RIR6_CLAMS Length = 345 Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 17/189 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +++GFE RV +++ + NMED ++ VP E+VVEI+ GQR+ R PG Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL------QQVGDK 121 YVLV+M +N+ SW +VR P V GF+G + P P+ +E +++ L QV + Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHN-PTPLRFEEAFSMLKSLVEIKEVAQVKGQ 275 Query: 122 PR----------PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 P + FE GE + + +G FA G + E+ E +L V VS+F R TPV Sbjct: 276 PTKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPV 335 Query: 172 ELDFSQVEK 180 EL F QV K Sbjct: 336 ELSFDQVTK 344 >UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 Tax=Bacteroidetes RepID=C7PUF8_CHIPD Length = 196 Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 113/179 (63%), Gaps = 10/179 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV++ SG E +V L ++ + ++ ++ +P E+V +++ G++ E+ F+PG Sbjct: 20 KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79 Query: 68 YVLVQMV---MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 YV+++ + M D +R+V V+ F+G D+P + EV+ ++ ++ ++ D Sbjct: 80 YVMIEAIDGKMTDEVIQSIRNVSGVIHFLG--KDKPIALRKAEVNKMLGKVDEMSDNGL- 136 Query: 125 KTLFEP---GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 T+ EP GE +++ DGPF DFNG++EEV +K +LKV+V IFGRATPVEL+F QVEK Sbjct: 137 -TMSEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEK 194 >UniRef50_O51355 Transcription antitermination protein nusG n=22 Tax=Borrelia RepID=NUSG_BORBU Length = 184 Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 111/183 (60%), Gaps = 15/183 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV----PTEEVVEIRGGQRRKSERKF 64 WYVVQ +S +E ++ +R I E +FG V++ P E+V EIR G++R ERK Sbjct: 5 WYVVQTYSQYEKKIEQDIRLLIN----EGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKI 60 Query: 65 FPGYVLVQMVMNDASWH-LVRSVPRVMG---FIG-GTSDRPAPISDKEVDAIMNRLQQVG 119 +PGY+L+++ + + W ++ ++ +V G F+G RP PI+D+EV ++ ++ Sbjct: 61 WPGYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIK 120 Query: 120 DKPRPKTL--FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 L FE GE VR+ GPF F G++ +DYE+ +LKV+V IFGR+TPVE+DF Sbjct: 121 ANKSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQH 180 Query: 178 VEK 180 +EK Sbjct: 181 IEK 183 >UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 Tax=Corynebacterineae RepID=A4QBE9_CORGB Length = 318 Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/194 (36%), Positives = 101/194 (52%), Gaps = 23/194 (11%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++Q +SG+E +V +L + +ED EV+VP E+V EIR G+R+ +RK PGY Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV---------- 118 VLV+M MND W +VR P V F+G + P+ ++V + +Q Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGN-ATPVKHRDVAKFLMPQEQAVVTGEAAAAA 242 Query: 119 ------------GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 KP+ F GE V + G FA + + +D E +L+V VSIFG Sbjct: 243 DEGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFG 302 Query: 167 RATPVELDFSQVEK 180 R TPV+L F QVEK Sbjct: 303 RETPVDLSFDQVEK 316 >UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S1Q0_SALRD Length = 185 Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 113/175 (64%), Gaps = 6/175 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV++ FS E +V L I+ +ED E+++PTE V E++GG+++ E+ FFPGY Sbjct: 10 WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFI-GGTSDRPAPISDKEVDAI---MNRLQQVGDKPRP 124 +L+ + L +P V+GF+ GT D P + ++E+ I M+R +++G++ P Sbjct: 70 ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQ--P 127 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + F+ G+ V+V DGPF FNG+VE+V ++ ++KV VSIFGR TPVELD+ QVE Sbjct: 128 EMPFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182 >UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYQ7_9FIRM Length = 198 Score = 125 bits (313), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 108/174 (62%), Gaps = 9/174 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWYVV +SG E +V ++ + ++ M DL ++ +PTEE VEI+ GQR+ + K F G Sbjct: 32 RWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFIG 91 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG-DKPRPKT 126 Y+L++M + + SW++VR+ V GF+ G +P P++ +EV +++G +K Sbjct: 92 YILIKMKVTNESWYVVRNTQGVTGFV-GQGKKPVPLTAEEV-------RRLGIEKVIVNL 143 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PG+ ++V +GPF NG V EVD E L+ + +FGR TPV+L++ Q++K Sbjct: 144 KIKPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDK 197 >UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B8E0K4_DICTD Length = 176 Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 108/174 (62%), Gaps = 3/174 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+VV +G E +V L +KL+++ED E++VP E+V+ ++GG++R +K FPG Sbjct: 5 KWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVFPG 64 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ ++M+ ++ ++R+ V GF+ GT RP+ ++ +E I L+Q + RP+ Sbjct: 65 YLFIRMIEDEDVIRMIRNTTGVTGFV-GTPGRPSTLNPQEEHWIRRFLEQ--KEIRPELK 121 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ V + GPF + G V+EV EK ++V +SIFGR TP E+D +QVEK Sbjct: 122 VKKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEKT 175 >UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 Tax=Lactobacillales RepID=NUSG_LACLA Length = 185 Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 6/173 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+V+Q ++G+E +V L E +L+NM D V +PTE + G+ ++ E FPGY Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 VLV+M M D +W +VR+ P V GF+G G +P P+ ++E+ I+ + +V + Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ VR+ DG F+ F + E++ +K L ++V +FGRATPVELD Q+E Sbjct: 133 FV--GKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIE 181 >UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 Tax=Tropheryma whipplei str. Twist RepID=Q83MQ7_TROWT Length = 217 Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 101/181 (55%), Gaps = 9/181 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYVV + +GFE R +L + N + +V VP E+VV IR GQR+ R PG Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL----QQVGDKPR 123 YVLV+M +N++SW +VR+ P + GF+G +P P+S +EV ++ Q + R Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNM-HQPVPLSFEEVFDMLKTTVSVSQTAARQKR 154 Query: 124 PKTL----FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 T+ E GE V + G FA G + E+ E RL V +S+F R TPVEL F QVE Sbjct: 155 SVTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVE 214 Query: 180 K 180 K Sbjct: 215 K 215 >UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 Tax=Synechococcus RepID=Q2JTQ7_SYNJA Length = 223 Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 105/184 (57%), Gaps = 13/184 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFP 66 RWY VQ SG E +V ++L + ++ D EV++P ++ R G+R++ E K FP Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----------PAPISDKEVDAIMNRLQ 116 GYVLV+M +ND +W +V++ P V+ F+G R P P+S EV I + ++ Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 V + P K PG+ + V GPF F G V +V E+ +LK +SIFGR TPVEL+F Sbjct: 160 -VEEVPL-KIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217 Query: 177 QVEK 180 QV K Sbjct: 218 QVRK 221 >UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 Tax=Acholeplasmataceae RepID=B1VAN1_PHYAS Length = 204 Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 102/178 (57%), Gaps = 6/178 (3%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG-GQRRKS 60 +EAP+ RWY+ Q + G+E V L ++ + +L V+ P E E R G++ Sbjct: 24 TEAPQFRWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSK 83 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQV 118 ER +PGYV ++M++ D SW +V++ PR+ GF+G G S +P P+S+KE++ ++ ++ + Sbjct: 84 ERNLYPGYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKM-GI 142 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 KP L G+ V + G A+ V +D ++ ++ V V +FGR PVE+ FS Sbjct: 143 MSKPNYDHLI--GKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFS 198 >UniRef50_C4LL90 Transcription antitermination protein nusG n=5 Tax=Corynebacterium RepID=C4LL90_CORK4 Length = 353 Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 27/198 (13%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+VQ +SG+E +V T L + +++ EV+VP EE VE++ G+R+ + K PGY Sbjct: 155 WYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPGY 214 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEV-------DAIMNRLQQVGDK 121 VL+++ ++DASW ++R P + F+G P P+ +EV + + +Q G++ Sbjct: 215 VLMRIELDDASWSVIRDTPGITSFVGNEG-HPTPVKIREVAKFLLPPETATQKAEQEGEE 273 Query: 122 --------------PRP-----KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSV 162 PRP K +E GE V V GPFA + + E+D E S+LK V Sbjct: 274 PAAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALV 333 Query: 163 SIFGRATPVELDFSQVEK 180 SIFGR TPVELDF QVEK Sbjct: 334 SIFGRETPVELDFDQVEK 351 >UniRef50_P27309 Transcription antitermination protein nusG n=58 Tax=Bacteria RepID=NUSG_STRVG Length = 299 Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 104/188 (55%), Gaps = 17/188 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ ++G+E RV +L + N+E+ + VP EE+V+I+ G+R+ + PGY Sbjct: 112 WYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPGY 171 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK------- 121 VLV+M + + SW +VR+ P V GF+G D P P++ E+ ++ Q Sbjct: 172 VLVRMDLTNESWGVVRNTPGVTGFVGNAYD-PYPLTLDEIVKMLAPEAQEKAAKAAAEEA 230 Query: 122 --PRP---KTL----FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE 172 P P +T+ FE G+ V V DGPFA + E++ + ++K V IFGR TPVE Sbjct: 231 GLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVE 290 Query: 173 LDFSQVEK 180 L F Q++K Sbjct: 291 LSFDQIQK 298 >UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 Tax=Spiroplasma citri RepID=Q14PQ9_SPICI Length = 217 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 11/184 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG E RV L + ++ NM+D+ ++ V E V +GG+ + E+ +PG Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRL---QQVGDKP 122 Y+ + M+MND +W++VR+ V GFIG G +P P++D+E ++++ ++ K Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151 Query: 123 RPKTL------FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 K FE + VR+ G F + G V ++D K V++ +FGR TP E++F Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211 Query: 177 QVEK 180 Q EK Sbjct: 212 QCEK 215 >UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5P4_9PLAN Length = 267 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 105/178 (58%), Gaps = 5/178 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKF 64 K WY+++ E + SL I ++ +E F +V+VPTE+V E + G+RR ++K Sbjct: 89 KFEWYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKI 148 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR---LQQVGDK 121 +PGY+LV MV ND +W +VR + F G +P P+ K+V+ I+ L++ ++ Sbjct: 149 YPGYILVNMVFNDETWFIVRETSGIGDFTGAMG-KPTPMDPKDVERILRSSKMLEEDTNQ 207 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 R F+ G+ VRV +G F +F G ++ +D R+ V ++IFGR+TPVEL+ Q+E Sbjct: 208 VRTAIPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIE 265 >UniRef50_C2KN14 Transcription antitermination protein nusG n=3 Tax=Mobiluncus RepID=C2KN14_9ACTO Length = 280 Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 22/192 (11%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLH-NMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 RWYVV +S +E RV ++ + + + ME+ +V +P EE +E++ RRK R P Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEV------------------ 108 GYVLV+M M + SW LV+ P V GF+G D P P++ +EV Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQD-PVPLTLQEVIDMLAPTAAQAAKATVTE 208 Query: 109 DAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 D + Q V + T FE G+ V + GPF + E+ + S+LKV V+IF R Sbjct: 209 DGQIAVSQAVSTQ--IVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERE 266 Query: 169 TPVELDFSQVEK 180 TPVEL+F QVEK Sbjct: 267 TPVELNFDQVEK 278 >UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 Tax=Bifidobacteriaceae RepID=B8DVU5_BIFA0 Length = 330 Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 13/185 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG+E RV +++ ++ +ED +V VP EEV + ++ R PG Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 203 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM------NRLQQVGDK 121 YVL++M ++ + +VR V GF+ G S PAP+S KEV ++M + L++ GDK Sbjct: 204 YVLIRMYPDENARRIVRETEGVTGFV-GPSREPAPLSRKEVVSMMAPMIASHALKEAGDK 262 Query: 122 P---RPKTL---FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 P + +TL ++ G+ V V DGPF + VV +V+ +L V VSIFGR TPVEL F Sbjct: 263 PAAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGF 322 Query: 176 SQVEK 180 QV++ Sbjct: 323 DQVQR 327 >UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQP0_FIBSS Length = 179 Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 14/181 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY V F+G E + L + I+ ++D FG ++VPT EVV G+RR S + FP Sbjct: 4 QWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNLFPA 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGT--SDRPAPISDKEVDAIM-----NRLQQVGD 120 Y++++M +++ + HLV ++ V F G T S P P+ EVD ++ N ++ G+ Sbjct: 64 YIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIE--GE 121 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P T+ GE V + +GPF F GVV+E+ ++++KV VS+FGR+TPVEL F+QVE Sbjct: 122 IQIPYTI---GENVCIKEGPFKGFVGVVDEI--MEAKIKVMVSVFGRSTPVELAFNQVES 176 Query: 181 A 181 A Sbjct: 177 A 177 >UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPF7_9ACTO Length = 274 Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 98/186 (52%), Gaps = 14/186 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWYV+ +SG+E RV L + NMED ++ VP EEV EIR GQR+ R PG Sbjct: 88 RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL-----------Q 116 YVL++M + D SW +V+S V GF+ G P +S+ EV +++ + Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFV-GNGRTPVALSENEVVSMLTPVIEAEAAAEAVAA 206 Query: 117 QVGDKPRPKTL--FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 P P TL + G+ V + P+A V EVD RL V +++ G+ TPVEL Sbjct: 207 GKAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELS 266 Query: 175 FSQVEK 180 F+QV K Sbjct: 267 FNQVRK 272 >UniRef50_P52852 Transcription antitermination protein nusG n=51 Tax=Bacteria RepID=NUSG_STRGB Length = 309 Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ ++G+E RV T+L N+ED + VP EEVV+I+ G R+ ++ PG Sbjct: 126 EWYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPG 185 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-----KP 122 YVLV+M + + SW +VR+ P V GF+G D P P++ E+ ++ + KP Sbjct: 186 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYD-PYPLTLDEIVKMLAPEAEEKAARAEGKP 244 Query: 123 RPK-------TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 P+ FE G V V DGPFA + E+ + ++K V IFG TPVEL F Sbjct: 245 APQRKVEVQVLDFEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSF 303 Query: 176 SQVEK 180 Q++K Sbjct: 304 DQIQK 308 >UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 Tax=Rhodopirellula baltica RepID=Q7UMY8_RHOBA Length = 225 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 5/175 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFPG 67 WY+++ E +A +LR+ +++ +M + FG+++VP+E+V R G+RR S+RK PG Sbjct: 50 WYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLLPG 109 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP-KT 126 Y++V M +ND +W LVR V + F G ++ +P P+ ++V+ +NR + P KT Sbjct: 110 YIMVYMSINDDTWFLVREVGGISDFTG-SAGKPQPMEPEDVERFINRPAVDDEDETPIKT 168 Query: 127 L--FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F+ G+ VRV +G F + G V+ VD R+ V ++IFGR+ P+ELD QVE Sbjct: 169 AIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVE 223 >UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 Tax=Selenomonas RepID=C4V5M2_9FIRM Length = 183 Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 105/175 (60%), Gaps = 7/175 (4%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 P + WYV+ +SG+E +V +L + +M ++ +V+VP E +E++ G+ + RK Sbjct: 14 PHRAWYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKV 73 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVLV M++++ SW++VR+ V GF+ G+ P P++ +E + I++ VG +P+ Sbjct: 74 FPGYVLVDMIVDEHSWYVVRNTTGVTGFV-GSEKHPIPLTAEEAERILS--GSVGAEPKR 130 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +T G+ VR+ G F D+ G + +D S + V V + G++ VE+D QVE Sbjct: 131 RTKVNVGDTVRITSGAFEDYAGKITSIDM--SSMGVKVDVDGKSLDVEID--QVE 181 >UniRef50_C8NX40 Transcription antitermination protein nusG n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NX40_9CORY Length = 342 Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 23/195 (11%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFPG 67 WY++Q++SG+E +V T+L I+ +E+ +V+VP E+V E + G+++ +RK PG Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSD---------------RPAPISDKEVDAIM 112 YVLV+M +NDA+W +VR P V F+G + + AP+ + + Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASEA 265 Query: 113 NR-------LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 N + + +KP F+ GE V + G A + + E+D E +++ VSIF Sbjct: 266 NTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSIF 325 Query: 166 GRATPVELDFSQVEK 180 GR TPVEL Q+E+ Sbjct: 326 GRETPVELTADQIER 340 >UniRef50_P29397 Transcription antitermination protein nusG n=12 Tax=Bacteria RepID=NUSG_THEMA Length = 353 Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 59/124 (47%), Positives = 87/124 (70%), Gaps = 6/124 (4%) Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR--LQQVG 119 RK FPGYV V+M+MND +++ VRSVP VMGF+ + +P P+ D+E+ I+ L++ Sbjct: 229 RKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVS-SGGQPVPVKDREMRPILRLAGLEEYE 287 Query: 120 DKPRPKTL---FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 +K +P + F+ G+MV++ GPF DF GV++E+D E+ LKV+V+IFGR TPV L S Sbjct: 288 EKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVS 347 Query: 177 QVEK 180 +VEK Sbjct: 348 EVEK 351 Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 31/46 (67%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE 51 KK+WY+V SG+E +V ++ + ++ +++L G +++P E V++ Sbjct: 2 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLD 47 >UniRef50_A5CC98 Transcription antitermination protein nusG n=2 Tax=Orientia tsutsugamushi RepID=A5CC98_ORITB Length = 184 Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 2/173 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY+++ SG E + ++ E + F E+++P +VV+++ G+ +K PG Sbjct: 10 QWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTMPG 68 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+L++M M D ++ V ++ F G S + +++KEV +M +L+ P Sbjct: 69 YILIKMDMIDQVKDFMQKVVKLNRFPGNES-KIVQVTEKEVQEMMVQLENKAQDPSFLEK 127 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 ++ GE VRVNDGPF F G +EEVDY K LK+S+SIF R+T + +DFSQVEK Sbjct: 128 YQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEK 180 >UniRef50_P68893 Transcription antitermination protein nusG n=32 Tax=Streptococcus RepID=NUSG_STRP1 Length = 179 Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M ++ K W+V+Q +SG+E +V +L + + +NM D V +PT+ V + GQ ++ Sbjct: 1 MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEI 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQV 118 E FPGYVLV+MVM D +W +VR+ P V GF+G G +P P+ ++E+ AI+ + Q Sbjct: 61 EENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQT 120 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 D T + G++V++ DG F G V E+ E +++K+ +++FG T E++ Q+ Sbjct: 121 IDV--FDTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 176 >UniRef50_O84322 Transcription antitermination protein nusG n=14 Tax=Chlamydiales RepID=NUSG_CHLTR Length = 182 Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/175 (40%), Positives = 108/175 (61%), Gaps = 3/175 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYVVQ F+ E +V SL + + M D ++++P+E V+E++ G+ + E+ +PG Sbjct: 3 KWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWPG 62 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+LV+M + D SW V+ V+ F+GG + P +S++EV I+ L++ K Sbjct: 63 YLLVKMHLTDESWSYVKKTQGVVEFLGGGA--PVALSEEEVKNILADLEEKKSGVVQKHK 120 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVEKA 181 FE G V++NDG F +F GVV EV ++K RL V VSIFGR T V +L+F QVE+ Sbjct: 121 FEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 Tax=Anaerococcus RepID=C7RDB1_ANAPD Length = 207 Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 8/173 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWYVV ++G+E RV ++ I D+ EV VPTEE VE++ ++ RK FPG Sbjct: 40 RWYVVHTYTGYENRVNDKIQMMIDNEQNPDIL-EVTVPTEEYVEVKNDTKKVKTRKLFPG 98 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK-PRPKT 126 YV+V+M + + SW+++R+ V GF+G +P ++ EV R V D+ P Sbjct: 99 YVMVKMNITNKSWYIIRNTQGVTGFVGPDG-KPVALTPAEV-----RKFGVKDEAPILNI 152 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ V + GPF F VEEVD EK +K V +FGR T ++LDF+ +E Sbjct: 153 NVNVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIE 205 >UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 Tax=Wolbachia RepID=Q5GRY4_WOLTR Length = 278 Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 5/182 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS-E 61 E K +WY+++ S +E +V + E+ + D F EV +P EE+ E+ ++ + Sbjct: 95 EFNKYKWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMR 154 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPR---VMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 RK FPGYV + + + D + V ++P+ V GF+ S P ISD E+ ++ N L Sbjct: 155 RKCFPGYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGS-VPKVISDDEIYSMCNALYNA 213 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + +E GE V++NDG F +F G V+ ++ EK + + VSI G+ T +ELD +QV Sbjct: 214 QETKKLSHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQV 273 Query: 179 EK 180 EK Sbjct: 274 EK 275 >UniRef50_A5TS63 Transcription antitermination protein nusG n=10 Tax=Fusobacterium RepID=A5TS63_FUSNP Length = 193 Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 14/194 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS ++W+++ +SG+E +V T L + ++ ++ ++VP EE+ EI G+ +K Sbjct: 1 MSVENVRKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKI 60 Query: 61 ERKFFPGYVLVQM-------------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKE 107 RK FP YV+++M ++ W+ VR+ V GF+G SD P P+ ++E Sbjct: 61 YRKLFPAYVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSD-PIPMEEEE 119 Query: 108 VDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 V I N + K K F G+ V++ G F D G V E+D E R+KV V IFGR Sbjct: 120 VKNIFNIIGVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGR 179 Query: 168 ATPVELDFSQVEKA 181 TPVE++ V K Sbjct: 180 MTPVEIEVDGVLKV 193 >UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 Tax=Anaplasmataceae RepID=B9KHV6_ANAMF Length = 188 Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 2/174 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+VQ SG E +VA + E + M +F EV +P EEV +++ ++ RK PGY Sbjct: 12 WYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSPGY 71 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV--GDKPRPKT 126 V + M ++D + + VR VP+V F+ + P I E++ + + + + + Sbjct: 72 VFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASEVC 131 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE G+ V +NDG F DFNG VE V+ +K VSV IFGR T +E S ++K Sbjct: 132 SFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQK 185 >UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC6_9BACT Length = 177 Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 99/176 (56%), Gaps = 8/176 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG E +V T++ + + +E G ++VP + IR G++ + ++K F Sbjct: 2 KWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFTS 61 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR--PAPISDKEVDAIMNRLQQVGDKPRPK 125 YV+++ M + + V F+G + P P+S +EVD RL + D R Sbjct: 62 YVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVD----RLLGITDPNRDI 117 Query: 126 TLFE--PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 ++ PG+MV+V GPF DF G+V++ ++L + V++FGR TPVEL+ SQVE Sbjct: 118 KVYSYMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVE 173 >UniRef50_D2MPP9 Transcription termination/antitermination factor NusG n=2 Tax=Erysipelotrichaceae RepID=D2MPP9_9FIRM Length = 196 Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 9/178 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK---F 64 RWYVV ++G E RV +L + ++ +++ + V EE + I+ + KSE K Sbjct: 19 RWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIK--KNNKSEVKKVNM 76 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGY+ VQM M D +W++VR+ P V GFIG G +P P+S+ E+++I+ R+ GD+ Sbjct: 77 FPGYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGH-GDQ- 134 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + F+ G+ V++ GPFA+ G + ++ + V +FGR TP E+ + ++K Sbjct: 135 KVVVDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQK 192 >UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGE4_KOSOT Length = 354 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 6/123 (4%) Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR--LQQVGD 120 + +PGY+ ++M+M D +W+LV+S P V+ F+ +P + KE+ A++ L++ + Sbjct: 231 RLYPGYIFIEMIMTDETWNLVKSTPNVVNFVS-NGGQPIELKPKEIKALLRLVGLEEYEE 289 Query: 121 KPRPKTL---FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 K RP + FE EMVR+N GPF DF G + E+D E+ +KV VSIFGR TPV L+ S+ Sbjct: 290 KTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVMLNLSE 349 Query: 178 VEK 180 +EK Sbjct: 350 IEK 352 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTE 47 +K+WY++Q +SG E + +L ++ + + LFG ++VP E Sbjct: 2 RKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPEE 43 >UniRef50_C7NC81 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=C7NC81_LEPBD Length = 207 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 23/194 (11%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WY++ +SG+E +VA L + I+ ++ D ++VP EEV+E + G++ K RK F Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 66 PGYVLVQMV-------------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM 112 P YV+++M+ ++ +W+++R+ V GF+G SD P P+SD+E Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSD-PIPLSDEEAS--- 130 Query: 113 NRLQQVG------DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 N L ++G PR F+ GE+V V G F G + E+DYE ++KV + + G Sbjct: 131 NLLAKIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLG 190 Query: 167 RATPVELDFSQVEK 180 R TPVE++ +++ K Sbjct: 191 RLTPVEVEHTEIAK 204 >UniRef50_O67757 Transcription antitermination protein nusG n=7 Tax=Aquificales RepID=NUSG_AQUAE Length = 248 Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 58/122 (47%), Positives = 78/122 (63%), Gaps = 7/122 (5%) Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMG--FIGGTSDRPAPISDKEVDAIMNRLQQV 118 + K FPGY+L++ MND + P V +GG +P P+ ++EV I+N++++ Sbjct: 131 DNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGG---KPVPLKEEEVQNILNQIKR- 186 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G KP K FE G+ VRV +GPF +F G VEEV EK +L V +SIFGR TPVELDF QV Sbjct: 187 GVKPS-KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQV 245 Query: 179 EK 180 EK Sbjct: 246 EK 247 Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 K+WY +Q G E +L + ++L ++DL EV+VP EE V IR + K Sbjct: 11 KKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQGKEK 63 >UniRef50_C0W699 Transcription antitermination protein nusG n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W699_9ACTO Length = 263 Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 34/210 (16%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRK 59 MS P + WYV+ +SG+E RVA + + +ED + +VP E V+E++ G++++ Sbjct: 57 MSSLPGE-WYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKE 115 Query: 60 SERKFFPGYVLVQMVMNDAS-----WHLVRSVPRVMGFIGGTSDR--PAPISDKEVDAIM 112 R PGYV V+M ++D W ++ P V GF+G DR P P++ E + + Sbjct: 116 VSRVRIPGYVFVRMDLDDPETSDRVWRTIKDTPAVTGFVG---DRYNPVPLTFDEAVSQL 172 Query: 113 N----------------------RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEE 150 R Q V + FE GE V V DGPF + E Sbjct: 173 GPTPEEVAAKQAAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISE 232 Query: 151 VDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + E +L+V +S+FGR TP EL F+QV K Sbjct: 233 IHPETQKLQVLISLFGRDTPAELSFTQVAK 262 >UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXH4_STRM9 Length = 190 Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 101/187 (54%), Gaps = 20/187 (10%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++ +SG+E +V T L + I ++ D ++VP E++ E + G+ RK FP Sbjct: 10 KKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFP 69 Query: 67 GYVLVQMV-------------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN 113 YVLV+M+ ++ +W+++R+ V GF+G SD P P+ +KEV+ I + Sbjct: 70 SYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSD-PLPMDEKEVEEIFS 128 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 ++ + + K +E G+ V+ DG G VE +DY ++K+ + + R T + L Sbjct: 129 KMS--NEDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTL 182 Query: 174 DFSQVEK 180 ++V K Sbjct: 183 GLNEVTK 189 >UniRef50_B5Y935 Transcription antitermination protein nusG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y935_COPPD Length = 182 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 15/184 (8%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDL-FGEVMVPTEEVVEIRGGQRR--KSERK 63 K+WY+V G E VA +++ ++ N + +V+VP E +E RG + R + +R Sbjct: 2 KKWYIVTTVHGKESAVAEAIK--LRAENAGNTAISDVLVPKEWRLEYRGKKPRPERVQRV 59 Query: 64 FFPGYVLVQM-------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ 116 +PGYV V++ V++ +W L+R P V GFI P P+ D E++ + LQ Sbjct: 60 IYPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKV---LQ 116 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + ++ K + G+ V V DG GVV +VD+EK ++ V +S+FGR +LD Sbjct: 117 KSREQEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAV 176 Query: 177 QVEK 180 QV K Sbjct: 177 QVRK 180 >UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDM6_PARUW Length = 124 Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 76/117 (64%), Gaps = 3/117 (2%) Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 +PGY+L++M ++D SW V++ V+ F+GG D+P P++D EV I+ L+ K Sbjct: 2 WPGYLLIKMNLSDESWQYVKNTNGVIDFLGG--DKPTPLTDFEVGEILKDLEDKKRKITQ 59 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVEK 180 K FE G+ V++ DG F +F G V EV ++K RL V VSIFGR T V +L+F QVE+ Sbjct: 60 KHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEE 116 >UniRef50_UPI00016C58F1 transcription antitermination protein NusG n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C58F1 Length = 223 Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 29/203 (14%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ--------- 56 KK+WY ++ SG E + ++ I + +ED+FG++MVP E+V+E + + Sbjct: 23 KKKWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTGEY 82 Query: 57 ---RRKSERKF--FPGYVLVQMVMNDASWHLVRSVPRVMGFIG-----GTSDRPAPISDK 106 RK ERK F GY+ ++ ND +L+R V F+ + P P+SD Sbjct: 83 NTVERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMSDA 142 Query: 107 EVDAIMNRLQQVGDKPRP---KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKS-----RL 158 EV ++ ++VG + P K FE G+ VR+ +G F D G V++V K ++ Sbjct: 143 EVKQMLG--EKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKV 200 Query: 159 KVSVSIFGRATPVELDFSQVEKA 181 V+V+ +GR VEL++ QV KA Sbjct: 201 IVTVTFWGRPLDVELEYWQVTKA 223 >UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 Tax=Mollicutes RepID=Q2ST07_MYCCT Length = 214 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 25/196 (12%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K +W+V+ +G E +V L++ IK ++ED + + V G + S + F Sbjct: 17 KGQWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSG---KASIKNKF 73 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIM----NRLQQ-- 117 PGY+ + M+M++ +W L+R+ P V GFIG G +P+P++ +E ++ +QQ Sbjct: 74 PGYIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAH 133 Query: 118 --------------VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS 163 V K F+ G++V+V G + G V+++DY K V++ Sbjct: 134 EEEKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAIE 193 Query: 164 IFGRATPVELDFSQVE 179 +FGR T +E+ F VE Sbjct: 194 MFGRWTTLEVSFKNVE 209 >UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=Q4A951_MYCHJ Length = 190 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 16/187 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVM---VPTEEVVEIRGGQRRKSERKF 64 +WY++ S E + L+ IK N+E+ F E+ VP E + G+++ R Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPIS-------DKEVDAIMNRL 115 + GY ++M M D +W +VR+ V G +G G +P PIS K+ D + Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124 Query: 116 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSV-SIFGRATPVELD 174 QQ D +E G+ V+V GPF+D G + E++ K+ + V + S+FGR TP + Sbjct: 125 QQTNDGT---INWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFE 181 Query: 175 FSQVEKA 181 + ++K Sbjct: 182 YKNLKKV 188 >UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFX3_MYCFE Length = 205 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 19/190 (10%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPT-------------EEVVEIRG 54 +WY++ SG E +V +L+ I +ED F P +E+ + + Sbjct: 10 QWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKN 69 Query: 55 GQRRKSER-KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAI 111 G+ K + + GY+ + M M D +W +VR+ V G IG G +P P+S ++D Sbjct: 70 GEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKS 129 Query: 112 MNR---LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 + LQ+ DK T F+ GE+V + DGPF G V E ++ V + G+ Sbjct: 130 FKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKK 189 Query: 169 TPVELDFSQV 178 TP + ++ ++ Sbjct: 190 TPADFEYKEI 199 >UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPM2_9BACT Length = 150 Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 9/111 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY +QA SG E + L I+ +M+D EV++PTE+V +R G++ RKF+PG Sbjct: 6 QWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNRKFYPG 65 Query: 68 YVLVQM-------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI 111 Y+ V + M + WH V++ ++ F+GG D+P P+SD E+ + Sbjct: 66 YLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLGG--DKPVPLSDDEIQIL 114 >UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXI2_MYCAP Length = 199 Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGE--------------VMVPTEEVVEIRG 54 WY++ SG E +V SL+ I +E+ F + V+ E + G Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65 Query: 55 GQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIM 112 + + GY+ + M M D +W +VR+ V G IG G +P P++ KE+D Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125 Query: 113 NRLQQ-VGDKPRPKTL--FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 + +Q + D K + F GE+V + DGPF G V E + ++ V V FG+ Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185 Query: 170 PVELDFSQVE 179 P + D+S VE Sbjct: 186 PTDFDYSVVE 195 >UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=B3PLY8_MYCA5 Length = 197 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 94/185 (50%), Gaps = 14/185 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV------PTEEVVEIRGGQRRKSE 61 +WY++ SG E V SL+ I +M++ F E+ + +E+ + G+ K + Sbjct: 11 KWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKVK 70 Query: 62 R-KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQV 118 + GY+ + M+M D +W+LVR+ V G IG G +P PIS + + ++ + + Sbjct: 71 YLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIAL 130 Query: 119 GDKPRP---KTLFEPGEMVRVNDGPF-ADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 +K +T+F+ G +V++ G F + +V+ D + V++ +GR P E+D Sbjct: 131 AEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAF-VNIEQYGRKVPTEID 189 Query: 175 FSQVE 179 + +E Sbjct: 190 HADLE 194 >UniRef50_Q982S4 Transcription antitermination protein nusG n=1 Tax=Mesorhizobium loti RepID=Q982S4_RHILO Length = 182 Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 15/183 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + P+ RWYV++ E R ++ + + N+E VM+ TE + RG ++ +S Sbjct: 8 DGPEARWYVLR----VEDRADIAVDKLLGEANVE----RVMLHTECEAKRRGRRKHQSLE 59 Query: 63 KF----FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 FPGY+ V++V A+W +R+V V+G IGG D P+P+S++E+ R++ Sbjct: 60 PVRVPSFPGYIFVKVVSCAATWAGLRTVSGVLGPIGGC-DGPSPVSEQEILKFQARIEND 118 Query: 119 GDKPRPKT-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + T + G+ V ++ GPFA F VV + +K ++ V V IFGR TP+ ++ Sbjct: 119 PEAIAVLTNALKAGDKVSIDSGPFAGFEAVVLMLG-DKHKVHVEVDIFGRKTPIGFALAE 177 Query: 178 VEK 180 V K Sbjct: 178 VTK 180 >UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZE8_DESAS Length = 164 Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 11/173 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +G E V + ++E +D+ +VP +VE R G + ER FPGY Sbjct: 3 WYVIHCLTGHEEDVRSRVKE-------KDI-ARAVVPRRLMVERRQGGWQYVERVVFPGY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V VQ M A+++ +R++P V+ +G + RP P+ EV + +L + GD +F Sbjct: 55 VFVQAHMTPAAYYAMRNLPGVIRVLG--TSRPVPLMGNEVTLFL-KLCRDGDPLGLSEVF 111 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G V+V GP G + ++D + R KV++S+ G VEL S ++K Sbjct: 112 VKGGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKKT 164 >UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IAM8_METNO Length = 255 Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 25/183 (13%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI--RGGQRRKSERKF 64 +RW+V+ A F R A L + G V T+E VE+ G+RR +R Sbjct: 90 RRWHVMVAKPRFARRAAKDLTKA----------GIPAVLTDERVELVEESGRRRIVKRPL 139 Query: 65 FPGYVLVQMVMNDA------SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 + V + A + VR V G PA + V A+ + L + Sbjct: 140 LRRVLFVGLPRCAAPEVVHRETYFVRDA--VRDGCGRAIQVPADQLRRFVRALADTLTE- 196 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R FEPG+ +R+ GPFA F+G++E+ DY RLKV+V IFGR +PV LDFS+V Sbjct: 197 ----RDPNAFEPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEV 252 Query: 179 EKA 181 E+A Sbjct: 253 ERA 255 >UniRef50_P36262 Transcription antitermination protein nusG (Fragment) n=8 Tax=Alphaproteobacteria RepID=NUSG_LIBAS Length = 70 Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 38/68 (55%), Positives = 48/68 (70%) Query: 113 NRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE 172 N+++ +P FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVE Sbjct: 1 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 60 Query: 173 LDFSQVEK 180 L ++QVEK Sbjct: 61 LAYNQVEK 68 >UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIP1_METNO Length = 230 Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 29/187 (15%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVP----TEEVVEIRGGQRRKSERK 63 RW++V +G K D +P +EEVV +R G+ ++ Sbjct: 58 RWHLVDCRAG-------------KARQFADALAAGAIPALRLSEEVVRVRSGRPIRTRMP 104 Query: 64 FFPGYVLVQMVMNDASWHLVRS-VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 F + V + + H +R R + + ++ + +E+D L GD P Sbjct: 105 LFGRLLFVGLDPHSEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLG--GDVP 162 Query: 123 RPKTL---------FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 + FE GE VRV DGPFA F+G+VEE+D E LKVSVSIFGR+TPV L Sbjct: 163 PAERRTGAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTL 222 Query: 174 DFSQVEK 180 + +QVEK Sbjct: 223 EPTQVEK 229 >UniRef50_C6PET8 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PET8_CLOTS Length = 187 Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +G E +V + N + + V++P ++E +G +R + + FPG Sbjct: 6 KWYVIYTRTGDELKVKRLIELLFSKLNKKPI--RVLIPKRAIIERKGKKRVEKIKFLFPG 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP--K 125 YV ++ M ++ + +P + F+ + PA + D E+ I L VGD Sbjct: 64 YVFIKTNMCFEIYYEISKLPHFLKFLKDEME-PAEVRDDEIRII---LSLVGDSDIVGFS 119 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 T + G V++ DGP F G++E++D K R+KV +++ G A V+L VEK Sbjct: 120 TGIKIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEK 174 >UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A2_THETN Length = 179 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 10/175 (5%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K WYVV + E RV + K + L + VP ++ R G+ ++ E K F Sbjct: 13 KPLWYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIF 72 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYV V+ VM +R + V F+GG + P PI+ +EV + ++ D + Sbjct: 73 PGYVFVKAVMTPEVMAAIRRINGVAHFVGG-GNEPVPITPEEV-----KRARIQDDLSEE 126 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ G+ V + DGPF +F G + + E ++ +++S+F R ++ Q+ K Sbjct: 127 --FKAGDTVMITDGPFENFIGKI--IKIEGRKINIALSLFDREMGIDFSPEQIMK 177 >UniRef50_A9SPI1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPI1_PHYPA Length = 719 Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 43/206 (20%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNM-EDLFGEVMVPT-EEVVEIRGGQRRKSERKFFP 66 WY+V E A L HI+ M + EV+ P+ +++ G+ S + +P Sbjct: 119 WYMVSTPKKAEHEAAEQL--HIQFAQMFPGMKYEVLTPSIPSFRKLKSGRYSDSRVRLYP 176 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIG----GTSDR----PAPISDKEVDAIMNRLQ-- 116 G +L++ VMN ++++RS R+ F G GTS P+ +S E++ + +++ Sbjct: 177 GCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEA 236 Query: 117 -----------------------------QVGDKPRPKTLFEPGEMVRVNDGPFADFNGV 147 Q+ + P P E G ++R+N GPF + G+ Sbjct: 237 EAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGI 296 Query: 148 VEEVDYEKSRLKVSVSIFGRATPVEL 173 V VD+E +++SV IFG++T EL Sbjct: 297 VNYVDHENETVQLSVVIFGQSTDAEL 322 >UniRef50_A6FV14 Transcription antitermination protein nusG n=2 Tax=Rhodobacteraceae RepID=A6FV14_9RHOB Length = 177 Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 12/174 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M+ + RWY+VQ F ++A N++ + +P ++V R G+ + Sbjct: 1 MTLEAQIRWYLVQ-FKPNSHKIAA--------RNLQRQSFQTFLPMQDVTRRRAGKFHTA 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 + FPGY+ V + W + + V + + RP P+ D V+A++ R G Sbjct: 52 PQPLFPGYMFVSLDTIRGPWRQINATLGVSKLVS-VAGRPQPVPDTLVNALLERCDDDGK 110 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 P+T F PGE V + GPFA F VE++ ++ R+ V + G+AT +++D Sbjct: 111 LLPPET-FSPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQVD 162 >UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVW1_SYNAS Length = 167 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 20/178 (11%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY V S E +V T L + +P EV R +R++ FPGY Sbjct: 3 WYAVHTRSRHEDKVFTGLVQK---------SITTFLPKIEVWSKRKDRRKRIMTPLFPGY 53 Query: 69 VLVQM--VMNDASWHLVRS--VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 + V M + N A ++++ V R++G G++ P P+ D ++DAI + V + Sbjct: 54 LFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSA--PIPVPDDKIDAIR---RIVDSRVEV 108 Query: 125 KTLFEP--GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + L P GE R+ DGPF G V + DY+K V++ + R+ ++LD SQ+EK Sbjct: 109 QNLQYPHVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEK 166 >UniRef50_A9BF38 Transcription antitermination protein nusG n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF38_PETMO Length = 354 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 68/123 (55%), Gaps = 9/123 (7%) Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGF--IGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FPGYV V+M+ + LV ++P V IGG +P ++ EV ++ + + + Sbjct: 232 LFPGYVFVEMMYIKETEELVSNLPYVSTILNIGG---KPVKLNKNEVRFVLRVMGEEAYQ 288 Query: 122 PRP----KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 R +T FE GE V++ +GPF F G +++ D EK ++V V++FGR T V L + Sbjct: 289 KRQVKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFGRETTVTLSLGE 348 Query: 178 VEK 180 +EK Sbjct: 349 IEK 351 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR 58 +K WYV+Q +SG E +V +L E IK E FG++++P EV E+ +R Sbjct: 2 RKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIP--EVDELNYSNKR 52 >UniRef50_C2NS75 Transcription antitermination protein nusG n=2 Tax=Bacillus cereus group RepID=C2NS75_BACCE Length = 179 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 10/169 (5%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + SG+E V E + L ++ + V+VP + V E R G + RK PGY Sbjct: 6 WYALCVRSGYEDLV-----ESLILRDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP----APISDKEVDAIMNRLQQVGDKPRP 124 +L+ M+ ++ ++ +P F+ D I D+E+ I+ L G Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 + FE G V V GP G++ +D K R K+ ++ G +++ Sbjct: 121 EAYFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDV 168 >UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP1_KANKD Length = 167 Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 22/185 (11%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSE +K WY++ + E R EH+K + ++P EV I G+R+K+ Sbjct: 1 MSEC-EKSWYLINSKPKQELRAL----EHLKNQEIN-----CVLPVLEVERIIRGKRQKA 50 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFI--GGTSDRPAPISDKEVDAIMNRLQQV 118 FPGY+ V++ N W +RS V F+ GG R D+++ L + Sbjct: 51 IEPLFPGYLFVELQTNGQGWSKIRSTRGVRDFVRFGGVPGRVP-------DSVLEHLLIL 103 Query: 119 GDKPRPKTLFEP--GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 P P G+ V + DGPF D GV + + EK R V ++I G+ T +EL+ Sbjct: 104 DTSFTPIETNAPGAGDKVIITDGPFKDLEGVFKISNGEK-RSIVLLTILGKVTEMELENK 162 Query: 177 QVEKA 181 Q+ KA Sbjct: 163 QLRKA 167 >UniRef50_UPI00016B21AA transcription antitermination factor n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21AA Length = 75 Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 ++P+ + FE GE+V V DGPF F+G + E+D K ++KV VS+FGR TPVELD QV+ Sbjct: 14 EEPKHQIDFEEGEVVSVIDGPFKGFDGTISEIDTVKGKIKVMVSMFGRDTPVELDALQVK 73 Query: 180 K 180 K Sbjct: 74 K 74 >UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6V9_DESAP Length = 173 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Query: 27 REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 +E +E EV +P V RG + FPGY+ V+++ V Sbjct: 14 KEDFAARQLEAKGLEVFLPRISVTRKRGASKFSLWEPLFPGYLFVKLLPEPVQVQRVNWT 73 Query: 87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRPKTLFEPGEMVRVNDGPFADFN 145 P V + D P P+ D+ + I R+ G P+P+ F G V V GPFA Sbjct: 74 PGVRRLLC-AGDTPVPVPDEAIALIRQRVGPGGRLTPKPQAEFPAGSRVAVRHGPFAGLL 132 Query: 146 GVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GVVE+ + R++V + + R T VE+D +++ Sbjct: 133 GVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDR 167 >UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 Tax=Nitrobacter winogradskyi Nb-255 RepID=Q3SSD1_NITWN Length = 234 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 9/87 (10%) Query: 95 GTSDRPAPISDKEVDAIMNRLQQVGDKPRPK--TLFEPGEMVRVNDGPFADFNGVVEEVD 152 TSDR A ++D ++ L + + P+ K FE G +VR+ DGPF DF+G +E +D Sbjct: 130 ATSDRVACMAD------IHALVAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLD 183 Query: 153 YEKSRLKVSVSIFGRATPVELDFSQVE 179 K RLKV++ IFGR +P E+ +Q+E Sbjct: 184 -SKGRLKVAIEIFGRLSPTEMSEAQIE 209 >UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGR2_BREBN Length = 177 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 13/180 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E V LR + +++ + VP V E + G + FFPG Sbjct: 2 KWYAIFVESGKEEVVQKYLRLYFNEQSLKSI-----VPKRLVPEKKSGIVYNVLKNFFPG 56 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTS----DRPAPISDKEVDAIMNRLQQVGDKP- 122 YVL+Q M + +H ++ +PR + + S D A S E I LQ +G+ Sbjct: 57 YVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGEV 116 Query: 123 --RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 K E +++ V GP G++++VD K+R K+ ++ G +++ + K Sbjct: 117 VDYSKVYLENSKVI-VESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILSK 175 >UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIE4_EGGLE Length = 170 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 5/173 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV Q +G E R + MED F +P EV+ G+ R +R FPGY Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPSVMEDCF----MPEYEVMWKIRGEWRLVKRLLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + +A + VP + +G + P++ KE D ++ + R + Sbjct: 58 LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMDG-NHTVRMSEGY 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ + V GP F G + ++D K R + VS+FGR P + V K+ Sbjct: 117 ISGDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRKS 169 >UniRef50_A3WUF1 Transcriptional antitermination protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF1_9BRAD Length = 170 Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 20/183 (10%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A ++WYVVQ EG+ A LR EV +P + + Sbjct: 3 ASGQQWYVVQTHPHAEGKAAAHLRRQ---------GFEVYLPRYARRRRHARRVDITASP 53 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FP Y+ V + + W +RS V + + D PAP+ D ++ RL+Q D Sbjct: 54 LFPRYLFVAIDLVHQRWRAIRSTVGVTNLV-YSGDEPAPVPDD----VVRRLKQREDSKG 108 Query: 124 PKTL-----FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 L F G+ VRV DG F+D G+ E + + R+ V + + GR V +D + Sbjct: 109 CVQLDLAPRFSAGDTVRVVDGAFSDCLGLFESMS-DGERVLVLLDLLGRKVRVTMDIDTI 167 Query: 179 EKA 181 E A Sbjct: 168 EAA 170 >UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z6E4_BACA2 Length = 176 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 13/166 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E V LR + + L+ ++P ++V E + G + ++ +K FPG Sbjct: 2 KWYALFVESGKEETVQKFLRLQF---DEQALYS--IIPKKKVTERKAGIKYEALKKMFPG 56 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGG----TSDRP---APISDKEVDAIMNRLQQVGD 120 YVL + M + ++H ++ +P + + +R I D+E+ I+ RL GD Sbjct: 57 YVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPII-RLIGEGD 115 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 ++ V V GP G+++++D K R K+ +S G Sbjct: 116 TVDYSKVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMG 161 >UniRef50_Q8EUN7 Transcription antitermination factor n=1 Tax=Mycoplasma penetrans RepID=Q8EUN7_MYCPE Length = 348 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 30/136 (22%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEV-MVPTEEVV---------------- 50 +WY+V + +G E V ++ + ++ +++ ++ E+ ++ T E+ Sbjct: 19 KWYIVTSINGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPINNPPPSRFR 78 Query: 51 --------EIRGGQRRKS---ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTS 97 + GG+ +K+ E FPGY+ ++M+M D +W+++R+ V GF+G G Sbjct: 79 NTKSITWETLPGGRYKKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVGSSGKG 138 Query: 98 DRPAPISDKEVDAIMN 113 +P P+SD EV + N Sbjct: 139 AKPIPMSDIEVANLFN 154 Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G+ LF G V + + GV+E +D EK + KV V I G+ T V++ FS++ Sbjct: 285 GNSDSKSPLFAVGNTVEILVESMQGYEGVIESIDLEKDKAKVLVDILGKETIVDVHFSEI 344 Query: 179 EK 180 K Sbjct: 345 RK 346 >UniRef50_A4YU22 Transcription antitermination protein nusG n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YU22_BRASO Length = 201 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 16/177 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+++ E +V + R L N+ + VM ++E +R G R Sbjct: 31 WYILRTHPHCEAKVMKAFR----LRNI-SAYLPVMTVSKEFRRMRRGFEWIERRDVVSPL 85 Query: 69 VLVQMVMND--ASWHLVRSVPRVMGFI--GGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 +L +++ D W R V +G + G + R P +++ +++ + + P+ Sbjct: 86 ILGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDI----RKIEDIANTPKS 141 Query: 125 KTL--FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 K FE G++VRV GPF F+ VE +D + RL V IFGR TP+++D ++E Sbjct: 142 KRARAFEVGQLVRVLSGPFRYFSARVERID-SRGRLSVGAEIFGRITPIDIDEGEIE 197 >UniRef50_Q4A648 Transcription antitermination protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A648_MYCS5 Length = 202 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 31/198 (15%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFG----------EVMVPTEEVVEI 52 + K RWY++ +G E + +L+ IK N+E F VP+ E+ Sbjct: 2 QNSKFRWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTEL 61 Query: 53 RGGQR----RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVM--GFIGGTSDRPAPISDK 106 Q+ + + FPGY+ V+ M D W+++R+ +V GG ++P P+S Sbjct: 62 NKKQKGLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQN 121 Query: 107 EVDAIMNRLQQVGDKPRPKTLFEP---------GEMVRVNDGPFADFNGVVEEVDYEKSR 157 ++ + + ++ K LFE G++V + DG + V+E++ E + Sbjct: 122 QIRKSLEKEEE------AKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNM 175 Query: 158 LKVSVSIFGRATPVELDF 175 ++S F + +++ Sbjct: 176 AEISFEDFNKKVEFKINL 193 >UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7D1F8_AGRT5 Length = 188 Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 29/190 (15%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE--IRGGQRRKSERK 63 K W+VV+ E V +LR+ +V +P E + E +RG R Sbjct: 12 KHEWFVVETKHKAEKAVEDALRKAGV---------KVFLPLETIGETVVRGRIIPAVSRP 62 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD--- 120 PGYVLV +V + A+ + + V GF+GG P +SD+E MNR + GD Sbjct: 63 LLPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMV-HPHRVSDEE----MNRFKAFGDDET 117 Query: 121 KPRPKTL--FEPGEMVRVNDGPFADFNGVV------EEVDYEK--SRLKVSVSIFGRATP 170 P K F+ G+ VR GPFA F G + VD E+ + V+V +FG+ + Sbjct: 118 APDVKHCEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVST 177 Query: 171 VELDFSQVEK 180 +E + +E+ Sbjct: 178 IEAPLALLEQ 187 >UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DDG1_LARHH Length = 172 Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 18/165 (10%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K WY+V +E L N++ + +P ++R G+ SE F Sbjct: 8 KMHWYLVHT---------KPRQEQCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEEALF 58 Query: 66 PGYVLVQMVM--NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKP 122 P Y+ +++ + +D SW +RS V + ++ PA I D ++ RL+ + Sbjct: 59 PRYLFIRLGLGQSDKSWAPIRSTRGVNQLVRFGTE-PARIDD----GLIERLRGHDAARA 113 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 P+ LF GE VR+ DGPFA G+ + D E SR+ V + R Sbjct: 114 NPEPLFRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTR 157 >UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKC4_ALKMQ Length = 162 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 4/139 (2%) Query: 35 MEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG 94 +ED+ +V+VP + E R G+ R ++ F GY+ + + ++ +++ ++ +P + F+G Sbjct: 19 IEDI--KVIVPQRIIPEKRQGETRHVKKILFTGYLFLNVELDVDTYYKLKRIPSIHRFLG 76 Query: 95 GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYE 154 ++P I +E+ ++ Q K + + G V+V GP G + +VD Sbjct: 77 --LEKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEGNKVQVVSGPLLGMEGHIIKVDKR 134 Query: 155 KSRLKVSVSIFGRATPVEL 173 K R KV +S+ G A V+L Sbjct: 135 KGRAKVCLSVLGDAKTVDL 153 >UniRef50_Q98R28 TRANSCRIPTION ANTITERMINATION PROTEIN n=1 Tax=Mycoplasma pulmonis RepID=Q98R28_MYCPU Length = 196 Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/188 (21%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNME------DLFGEVMVPTEEVVEIRGGQRRK 59 K WY++ E V +++ + N+E +F E + +E+ + + G K Sbjct: 3 KFNWYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDSYK 62 Query: 60 SERK-FFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQ 116 + +K + GY+ ++MV+ + +W LVR+ V G +G G P PIS + ++ Sbjct: 63 TTKKNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEEET 122 Query: 117 QVGDKPRPK---TLFEPGEMVRVNDGPFADFNGV--VEEVDYEKSRLKVSVSIFGRATPV 171 + ++ + + F G V++ DGPF + V +++ ++EK + + G++ Sbjct: 123 KKEEEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSVDT 182 Query: 172 ELDFSQVE 179 ++D ++ Sbjct: 183 QIDHKHLK 190 >UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 Tax=Thermoanaerobacter RepID=B0K4N5_THEPX Length = 179 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 16/177 (9%) Query: 7 KRWYVVQAFSGFEGRV----ATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 K+WYV+ SG+E +V +E +KL ++P +++E GQ + + Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEEVKL----------LIPKRKIIERVKGQPVEKIK 51 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGYV V M+D ++ + V + G RPA + ++E+ I++ + Sbjct: 52 LLFPGYVFVNAEMSDDLYYKISEVLK-RGIFLKEGKRPAFVKEEEMKIILSLTKNSDLID 110 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 K + E GE V++ +GP + G+++++D K R KV SI G V+L +E Sbjct: 111 LSKGIME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166 >UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobacter RepID=A6F1J5_9ALTE Length = 163 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 21/175 (12%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY +Q R T L+ +D+ P V +I+ G+R K FPGY Sbjct: 3 WYALQHKPSQGDRALTHLQN-------QDI--ACFYPKITVEKIKAGKRTKQLEPLFPGY 53 Query: 69 VLVQMVMNDASWHLVRS---VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 + V + D W +RS + R++ F +++PA I D + I + L V ++ K Sbjct: 54 LFVNLEQTDPMWAKLRSTRGILRIVSF----ANKPAAIPDDVIQHIKDSLHTVAEQGGIK 109 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 PG+ V +++GPF + + D E+ R V +S + V++ S + + Sbjct: 110 ----PGQAVELDEGPFKGIEAIFQAYDGEE-RAIVLISFMQKQQTVKVPLSTLHR 159 >UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S2H9_9CLOT Length = 160 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +G E +A L D+ + + P E GG E FPGY Sbjct: 3 WYVVQVRTGEEKDIAAKL---------TDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V +QM N +++ +++VP ++ + GT ++ E + I Q G P + Sbjct: 54 VFLQMDYNAGNYYRLKAVPGIVKLLSGT------LTYLEAEWIRLLAGQGGRPLEPTLMR 107 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 E E + + G +F + +D R + +SI G V+L Sbjct: 108 ETEEGLEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQL 152 >UniRef50_C8PLY0 Transcription antitermination protein, NusG family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PLY0_9SPIO Length = 186 Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 14/178 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 +Y VQ +G E + +R+ N E+ + P + + G R+K + FPGY Sbjct: 3 YYAVQVKTGKEPELLKKIRKL----NEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGY 58 Query: 69 VLVQMVMNDAS----WHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 + +++ +D S W L R P F+ + P P+ D ++ ++++ G+ P Sbjct: 59 IFLEI--DDLSLPLCWQL-RKTPNFYHFLPNNQN-PLPLVDNDL-SLLHHFLSFGEVTAP 113 Query: 125 -KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 K F+ + V DG G + +VD K R KV + ++ + P++L F +E A Sbjct: 114 SKVYFDANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIEPA 171 >UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WZX9_RHOS5 Length = 174 Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 9/144 (6%) Query: 41 EVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRS---VPRVMGFIGGTS 97 V PT+ + G + R + ++ FPGY+ V+ W + + V R++ F Sbjct: 36 SVFSPTQNQTKKHGTRFRHTVQQLFPGYLFVRFNPEFPQWRAINATYGVSRLVTF----G 91 Query: 98 DRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSR 157 + P+P+ + + R G P+ L G+ VR+ GPFAD+ VE+++ +K R Sbjct: 92 NIPSPVPHALIAGLRQRCANDGTLLPPEQL-SLGDRVRIISGPFADYVATVEQIEPDK-R 149 Query: 158 LKVSVSIFGRATPVELDFSQVEKA 181 + + + I G T ++ + ++KA Sbjct: 150 VWILLDILGGQTKTQIQIAALQKA 173 >UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitrosomonas europaea RepID=Q82X31_NITEU Length = 165 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 15/175 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+V +E N++ +P V ++ G + FP Y Sbjct: 3 WYLVHT---------KPKQEKCAFQNLQQQGYRCYLPMLPVEKLHLGNLTVVDEPLFPRY 53 Query: 69 VLVQMVMNDA--SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + +Q+ D+ SW +RS V + S+ PA I D +D + R+Q+ + +P+ Sbjct: 54 LFIQLEQGDSAKSWVPIRSTRGVNRLVCFGSE-PARIDDILIDLL--RMQEASFQHKPER 110 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 LF+PGE VR+ +G FA G+ + + E+ R+ V + + + + + + + K Sbjct: 111 LFKPGERVRLTEGAFAGIEGIYQMAEGER-RVMVLIELLSKPVAMRVSPTSLRKT 164 >UniRef50_UPI0001BCE1C5 transcription antitermination protein NusG n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE1C5 Length = 77 Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 40/63 (63%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY +Q ++G E V ++ + H +E+ EV+VPTE+V+EI+ G+++ +E +PG Sbjct: 4 KWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINEESLYPG 63 Query: 68 YVL 70 Y Sbjct: 64 YAF 66 >UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacterium RepID=B0UIZ3_METS4 Length = 225 Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%) Query: 100 PAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLK 159 PAPI DA+ R + D+ L G+ VRV GP A G +E VD + R + Sbjct: 137 PAPILQAFADALAGRAGEGEDEAVEAVLLALGDAVRVTRGPLAALRGTIEAVDPARRRYR 196 Query: 160 VSVSIFGRATPVELDFSQV 178 V++ +FGRAT V+L +V Sbjct: 197 VALGLFGRATRVDLAAEEV 215 >UniRef50_UPI0001692BF2 putative transcription antiterminator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BF2 Length = 176 Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 19/175 (10%) Query: 9 WYVVQAFSGFE---GRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 WYV+ +G E G+ ++ H+ L + +P + V E G RR R F Sbjct: 3 WYVLFVTTGKEDVVGKYISNFCNHLSL--------QCFIPKKVVPECHKGVRRDVIRVLF 54 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI-MNRLQQVGDKPRP 124 PGY+ ++ M+ ++L++ +P + ++ + DR S AI ++ + D Sbjct: 55 PGYIFIRTTMSSNLYYLLKEIPN-LHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGN 113 Query: 125 KTLFEPGEM------VRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 + E E+ V+V GP ++++VD K R K+ V++ + V++ Sbjct: 114 RDTIEYSEVSIINKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDV 168 >UniRef50_B6TZG2 Transcription termination factor nusG family protein n=2 Tax=Andropogoneae RepID=B6TZG2_MAIZE Length = 336 Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 50/163 (30%) Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTS-------DRPAPISDKEVDAI-------- 111 G V + +N +R GFIG T +P PI EV++I Sbjct: 163 GLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDEVESIIREEKEEQ 222 Query: 112 ------------------------------MNRLQQVGDKPRPK-----TLFEPGEMVRV 136 MN++++ K + + F PG V V Sbjct: 223 ERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTRHSAFSPGATVHV 282 Query: 137 NDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 GPFADF G + EV+ + + V +S+FG+ + V+LDF Q+E Sbjct: 283 LSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIE 325 >UniRef50_Q10BA7 Os03g0825500 protein n=3 Tax=Oryza sativa RepID=Q10BA7_ORYSJ Length = 330 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 50/178 (28%) Query: 52 IRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTS-------DRPAPIS 104 ++ G + PG V + +N +R GFIG T +P PI Sbjct: 149 LKNGSISTKSKPLHPGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIP 208 Query: 105 DKEVDAI--------------------------------------MNRLQQVGDKPRPK- 125 +EV++I MN++++ KP K Sbjct: 209 VEEVESIIREEKEEQERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKG 268 Query: 126 ----TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F PG V V GPF F G + EV+ + + + +++FG+ + V+LDF Q+E Sbjct: 269 GSNHNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIE 326 >UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P702_9FIRM Length = 169 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 13/161 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+Q +G E T++R+ + + + VP EE + + G FPG Sbjct: 3 KWYVLQVLAGQE----TAVRDALHIMGIR-----AAVPQEERLLRKNGGWTSRIYTLFPG 53 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP-RPKT 126 YV + + + +++ V++VP V+ F+G + P+ ++ E + + RL G +P +P Sbjct: 54 YVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWL--RLLSNGGEPLKPSR 111 Query: 127 LFE-PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 + E P VR+ +G +F D R +V +++ G Sbjct: 112 VEELPDGSVRIMEGVLQNFPVRSIHFDRRARRARVGITLCG 152 >UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomonas RepID=Q48H23_PSE14 Length = 170 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 23/148 (15%) Query: 4 APKKRWYVVQAFSGFEGRVATSLR-EHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 A + RWY++Q E R LR +H + + P + V+ + R +++ Sbjct: 5 AQEARWYLIQTKPRQEARAEEHLRRQHFQCYR----------PLQVDVK-KTAARVQADE 53 Query: 63 KFFPGYVLVQMVMNDASWHLVRS---VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 FPGY+ +QM +W+ +RS V R++ F G P P+ D ++ I RL Sbjct: 54 PLFPGYLFIQMDQVQDNWYPIRSTRGVSRIVTFGG----HPVPVRDHLIEQIRQRL---- 105 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGV 147 P PK F G+ V + G ++D + Sbjct: 106 STPAPKARFIQGDPVMITTGSWSDVEAI 133 >UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8INV2_METNO Length = 178 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 75/186 (40%), Gaps = 24/186 (12%) Query: 7 KRWYVVQAFSGFEGRVATSL-REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K W+VVQ E RV L RE + +P V +R G++ K F Sbjct: 6 KTWFVVQTGPARERRVVELLAREG----------ADTWLPLFRVTTVRRGRKVDDFEKVF 55 Query: 66 PGYVLVQM---VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL------- 115 YV + M ++ V+ +G DRP P + + +RL Sbjct: 56 ASYVFAGLDEETMRRRGTSVLFDCDHVLDVLG--VDRPLPFPADALQVLADRLAGHNRDE 113 Query: 116 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 + G + + GEM R+ +GPF F VEEV +K V IFGR TPVE Sbjct: 114 TEEGRRRTEAAKIQVGEMRRIINGPFMSFFAEVEEV-LSNGIIKAGVRIFGRITPVEFTP 172 Query: 176 SQVEKA 181 Q++ A Sbjct: 173 DQLDAA 178 >UniRef50_Q7NAK3 NusG n=2 Tax=Mycoplasma gallisepticum RepID=Q7NAK3_MYCGA Length = 268 Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 32/145 (22%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV---------------P 45 MS+ +WY+ +G E V +L+ ++ + ED + V P Sbjct: 2 MSKKSTAQWYIATTTNGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNNP 61 Query: 46 TEEV------------VEIRGGQRRK---SERKFFPGYVLVQMVMNDASWHLVRSVPRVM 90 T + V + G +K ++ +PGY+ ++M MN+A+W VR+ + Sbjct: 62 THNIPATMRNSTYIKWVTVDNGVYKKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNIT 121 Query: 91 GFIG--GTSDRPAPISDKEVDAIMN 113 G +G G +P PIS E ++N Sbjct: 122 GIVGSSGKGAKPIPISSSEELDLLN 146 >UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WL22_EGGLE Length = 172 Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 17/178 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRKSERKFFPG 67 WYVVQ G E V + + + E+L E +P EV + I+G + +SE PG Sbjct: 4 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSE-VLLPG 58 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ V +RSVP+ +G +D P+ D+EV A +N KP + + Sbjct: 59 YIFVITDQPGKLREALRSVPKFTRLLG-NNDVFTPLDDQEV-AFINAFT----KPDHRVV 112 Query: 128 -FEPGEM----VRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G M + + +GP + G+++++D K + + I GR V++ V K Sbjct: 113 EFSSGVMEGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170 >UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZB7_HALHL Length = 175 Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIG-GTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FP Y+ +++ W +RS V G + GT PA + D VD I R++ Sbjct: 62 FPRYLFIRLAAGLEDWSPIRSTTGVSGLVRFGTW--PARVPDGLVDTIRARIEDGHCDLA 119 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P+ L +PGE VRV DGPF + G+ R+ + + + G+ T + + Q+E+A Sbjct: 120 PEPL-QPGERVRVLDGPFQSYEGIF-RASRSDERVMILLDVAGQHTTLTVSQHQIERA 175 >UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIY4_SYNFM Length = 212 Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 8/142 (5%) Query: 41 EVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP 100 + +P E R +R++ FPGYV V V+++ + + P + + S+ P Sbjct: 64 DCFLPLMECWSKRLDRRKRITLPLFPGYVFVHTVLDNYTNVNILKTPGALSILKN-SEGP 122 Query: 101 APISDKEVD---AIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSR 157 PI +++ I+N + + P + GE VRV GP + G+++ +K R Sbjct: 123 LPIPVYQIENLQTILNSSKSLDLHP----YLKEGEWVRVIRGPLSGCVGILKRHAPKKGR 178 Query: 158 LKVSVSIFGRATPVELDFSQVE 179 L VSV ++ VELD VE Sbjct: 179 LVVSVDCIRQSVSVELDVEDVE 200 >UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Clostridiales RepID=C6LL07_9FIRM Length = 183 Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 16/177 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q +G E R+ R I +E F +P EV + G+ + ++ FPGY Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLEQCF----IPRYEVKKHIQGEWKTQKQILFPGY 72 Query: 69 VLVQMVMNDASWHLVRSVPRVMGF--IGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 V V V +D +L + +V+G + GT PIS+ E + ++ G + + Sbjct: 73 VFV--VTSDIQ-NLHEELKKVIGLTKLIGTGREIVPISENEKEFLLG----FGGEEQVVQ 125 Query: 127 LFE---PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + E G V ++ GP G + ++D K + + + + G V++ V K Sbjct: 126 MSEGIITGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182 >UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKF0_9FIRM Length = 186 Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +RWY VQ +G E V ++ I +++ F +P E ++ G+ K + FP Sbjct: 2 ERWYAVQVRTGREEAVLQLSKKMIDGSVLKECF----IPYYERMKRYQGEWHKEQYILFP 57 Query: 67 GYV-LVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 GY+ LV +++ W L + VP + +G + PI ++E I+ ++ Sbjct: 58 GYIFLVTEQVDELFWEL-KKVPGLTKILGDGME-FVPIKEEE-KVILQKMGGSDHIAEMS 114 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G++V V GP + G ++ +D K + + +FGR T V L V K Sbjct: 115 KGYVIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMK 169 >UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVL5_CHRSD Length = 182 Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 11/147 (7%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A + RWYVVQ G R EH+ V P EV + R + Sbjct: 14 AARPRWYVVQCKGGESFRAG----EHLTNQGYR-----VFHPVLEVQKKRRNKLVWIAEP 64 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKP 122 FP Y+ + + ++W +RS V+ +G D P P+ D ++ + R + Sbjct: 65 LFPHYLFIHLDRVASNWRPIRSTRGVLKLVG-FGDEPLPVPDALIETLAARAHLDEASRT 123 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVE 149 F PGE+V + +GPF V + Sbjct: 124 SGNAYFRPGEIVEITEGPFQALQAVFD 150 >UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V684_9RHOB Length = 171 Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 4/151 (2%) Query: 30 IKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRV 89 + L N+E PTE E RG + + FPGYV VQ V S + Sbjct: 22 MALRNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAASGGVRAVNSTRGI 81 Query: 90 MGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVE 149 + PA + + A+ R P P+ F+ G+ VR+ DGPFA+F VE Sbjct: 82 TKLVT-LGQGPAIVPAGLIAALRIRFAPPDITPAPQ--FDQGDWVRILDGPFAEFVAQVE 138 Query: 150 EVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + R+ + + + GRAT V +D +++ Sbjct: 139 ATPAAE-RVYLLIDLMGRATRVAVDARSLKR 168 >UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCF2_PSEPF Length = 178 Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 13/175 (7%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + WY++Q + R H+ L + + +E V+ G+R++ + F Sbjct: 8 QPNWYLLQC------KPRQDERAHLNLLQQNYVVFHPQLVSERVIR---GKRQRVQESLF 58 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGY+ +Q+ +D +W +RS V F+ PA +++ ++ + R + P Sbjct: 59 PGYLFIQLSRDD-NWAPLRSTRGVSRFVEFNHG-PATVAEHVIEHLRARCLE-STLSEPD 115 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PGE +++ GP A GV + + R+ + + R PV L S +E+ Sbjct: 116 EALKPGENLQIVSGPLAPLEGVFLGL-HGTDRVMILLQFLNREQPVCLPLSVIER 169 >UniRef50_B9HCH7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HCH7_POPTR Length = 342 Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 59/229 (25%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPT-EEVVEIRGGQRRKSERKFFP 66 +W++V+ S G + + + N + +V P+ +E +++ G + FP Sbjct: 110 QWWIVRV-SRIRGDETSDVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKPKPIFP 168 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIG---GTSDR----PAPISDKEVDAIMNRLQQ-- 117 G V + V+N VR V GF+G G + R P P+SD +++A+ + ++ Sbjct: 169 GCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAVFQQAKEEQ 228 Query: 118 -----------------------------------------------VGDKPRPK-TLFE 129 V R K L + Sbjct: 229 EKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSRKKGDLPK 288 Query: 130 PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G VRV G FADF G +++++ + + V V++FG+ + VELD S++ Sbjct: 289 TGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337 >UniRef50_Q1Q029 Similar to transcription antitermination protein NusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q029_9BACT Length = 169 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 18/174 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+ V S E +V + LRE N+ P + + R +++ + FPGY Sbjct: 8 WFAVHTRSRHEKQVDSFLREK----NISSFL-----PLVKTISRRRDRKKFIDVPLFPGY 58 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSD-RPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 + V + +++ + ++S V+ IG D P+PI D E++ + L P Sbjct: 59 LFVNITLDN--LYEIKSTRGVVRIIGNEDDFIPSPIPDAEINN-LKTLINSNVAIDPYKY 115 Query: 128 FEPGEMVRVNDGPFADFNGVV--EEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G VRV GP G++ + +Y R+ VS+ I ++T E+ + +E Sbjct: 116 LQKGTKVRVVSGPLIGLEGLLVKRKTNY---RVVVSIDILQKSTSAEISIADIE 166 >UniRef50_A3AP86 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=A3AP86_ORYSJ Length = 390 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 6/83 (7%) Query: 102 PISDKEVDAIMNRLQQVGDKPRPK-----TLFEPGEMVRVNDGPFADFNGVVEEVDYEKS 156 P+ D E+ +MN++++ KP K F PG V V GPF F G + EV+ + Sbjct: 305 PVEDSEL-MLMNKIKRQFKKPISKGGSNHNAFTPGASVHVLSGPFEGFTGSLLEVNRKNK 363 Query: 157 RLKVSVSIFGRATPVELDFSQVE 179 + + +++FG+ + V+LDF Q+E Sbjct: 364 KATLQLTLFGKESFVDLDFDQIE 386 >UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1 Tax=Sinorhizobium saheli RepID=D1CTG7_SINSA Length = 129 Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 55 GQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 Q R +F Y+ V + + W + S V + + P P+ V++++ Sbjct: 5 AQHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVM-SEHAPLPVPHGVVESLLAA 63 Query: 115 LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 G PK L EPG+ +RV +GPF D G ++ V +++ + I RA P+ +D Sbjct: 64 TDDEGFL-HPKELLEPGQKIRVTNGPFTDQLGTLDYVG-RSGAVRILIDIMNRAVPIYID 121 >UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XR75_9FLAO Length = 158 Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 14/158 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ E +VA++L E L +V PT E V + +++K + F Y Sbjct: 3 WYVLYVKPQSEKKVASAL---------EKLGVKVFCPTLEEVRVWSDRKKKIQVPLFKSY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V V + + V +VP V+ ++ +PA + D+E+ AI + L + Sbjct: 54 VFV--CLPNTERQQVFAVPGVVRYLFWLG-KPAVVRDEEIAAIQDWLSDEAVADVQVRTY 110 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 PG V++ G F G+V+EV + RLK+ + G Sbjct: 111 TPGTEVKIAAGHFKGQKGIVQEVG--RKRLKMVIKSLG 146 >UniRef50_C5B0S5 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B0S5_METEA Length = 187 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +TLF G+ VR+++G FA F +E VD ++ R V+V +FGR P E+ +E A Sbjct: 131 ETLFSVGDEVRISNGAFATFMAKIEGVDVKRGRYTVAVDVFGRPVPFEIAEESLEAA 187 >UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AEF0 Length = 175 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 22/180 (12%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K+ WY + E +VA L + + E +P +EVV +R+K + Sbjct: 3 KENWYAMYVRMHHEKKVAEKLGQ---------MGVEHYLPVQEVVRQWSDRRKKLQVVVI 53 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMG-FIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 P + ++ ++R++P V G I + RPA I D+E M R + + D Sbjct: 54 PMMIFIR-ASEQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEE----MQRFRFMLDYSEE 108 Query: 125 KTLF-----EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F PG+ +RV GP A +G + E+D KS++ V + G A+ VE+ VE Sbjct: 109 AVHFINTPLAPGQKIRVIKGPLAGLDGELTEID-GKSQVMVRIEQLGYAS-VEMPVGYVE 166 >UniRef50_UPI0000382CEE COG0250: Transcription antiterminator n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382CEE Length = 63 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 32/49 (65%) Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 +TLF G+ VR+ DG FA F VE+VD ++ R V+V +FGR P E+ Sbjct: 7 ETLFAIGDEVRITDGGFATFMAKVEKVDVKRGRYTVAVDVFGRPVPFEI 55 >UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RLT4_9MOLU Length = 173 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/176 (21%), Positives = 79/176 (44%), Gaps = 11/176 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q +G E ++ + + I D+ E +P ++ G ++ + F GY Sbjct: 5 WYVIQVRTGKEEKIKNTCEKLIS----RDILEECFIPKCIRLKKYQGTWKEVDEVLFKGY 60 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL- 127 V + D ++ ++ +P + +G + PI +E AI L + G + L Sbjct: 61 VFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEE--AIF--LLKFGKEKHIVDLS 116 Query: 128 --FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ + + GP + G+++++D K + V +F + T V++ + K+ Sbjct: 117 QGYIEGDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGKS 172 >UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QKQ8_NITHX Length = 196 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 27/197 (13%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVM---VPTEEVVEIRGGQRRKSER 62 K WYV+Q E + A L + D + V+ VPT + R+ R Sbjct: 4 KSIWYVLQTRPAHEDKAARGL-----VARGFDPYAPVVYRRVPTGRRDDKGRKLTREIAR 58 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI-MNRLQQVG-- 119 FPGY+ VQ D + VR VP + G++ + P + D +D I ++ ++ G Sbjct: 59 PMFPGYIFVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFGRY 118 Query: 120 ---------------DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 + R F+ G+ VRV G + D+ V + D + R+ + I Sbjct: 119 LDEEERARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVLLFHI 177 Query: 165 FGRATPVELDFSQVEKA 181 FGR T + D + +E A Sbjct: 178 FGRETKIHADQADLEVA 194 >UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174528A Length = 158 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 11/123 (8%) Query: 64 FFPGYVLVQMVMNDASWHL--VRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP Y + V ++A + +V R++GF G PAPI D ++ + +Q G + Sbjct: 31 LFPSYFFARFVYSEAHRAVKHTHNVIRIVGFGGD----PAPIPDLTIENLREEMQ--GAE 84 Query: 122 PRP-KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV-- 178 R K E G+ V V +GP GVVE + + R+K+ + GR + VE+ S++ Sbjct: 85 LREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKLLLEFLGRQSLVEVQASKLLS 144 Query: 179 EKA 181 EKA Sbjct: 145 EKA 147 >UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE68_9RHOB Length = 166 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 18/176 (10%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+++Q F+ H N+ E +P ++ + + + R FP Sbjct: 3 KEWFILQ----FKPN-----SHHQATKNLTRQGFETFLPLTDITSRKTSRFINTTRPLFP 53 Query: 67 GYVLVQMVMNDASWHLVRS---VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 GY+ + WH + + V R++ F P + V+ +M R + K Sbjct: 54 GYMFITFDRTKPEWHKINNTYGVSRLVTFNSNLKSIPTTL----VENLMVRC-DLSSKIL 108 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 P + G+ V++ GPFA+F VE + ++ R+ V + + R T ++ +E Sbjct: 109 PVENLKKGDQVKILHGPFANFIATVETYETDQ-RIWVLMDLMSRKTKIQTPLDALE 163 >UniRef50_B8IEU5 Putative uncharacterized protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IEU5_METNO Length = 171 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 15/175 (8%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 + W++V+ GR +L+E +VP V R G+ + F Sbjct: 5 RTWHLVRTAPSMMGRALDTLKEQGI---------PTVVPRTVAVGHREGRPYLRRAQMFH 55 Query: 67 GYVLVQM---VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 V V + D R V RV+ P IS ++ A + + + +K + Sbjct: 56 RTVFVGVEGAADLDGKVPTARGVTRVLRNPTRADMAPMTISGPDMAAFVAAIG-ITEKRK 114 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 P + G+ V V GPFA F +VEEV RLKV+V IFGRATP E + V Sbjct: 115 PAGIAA-GDRVVVQAGPFASFPAMVEEV-LPNERLKVAVQIFGRATPFECGHADV 167 >UniRef50_B1AJM2 Transcription termination/antitermination factor NusG n=15 Tax=Ureaplasma RepID=B1AJM2_UREP2 Length = 258 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 63/229 (27%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-------------- 53 +WY+V SG E +V ++++ + + D ++ + E++ E++ Sbjct: 25 QWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMKNR 84 Query: 54 -----------GGQRRKS----ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GT 96 G + + E F GY+ ++ M D W L+R+ V G +G G Sbjct: 85 ANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSSGK 144 Query: 97 SDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVR----------VNDGPFADFN- 145 + +P P+ + ++ L+ + D + L E V D F +F Sbjct: 145 NVKPIPVPEDKI------LKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEV 198 Query: 146 ---------------GVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + ++D K V FGR ++L+F+ ++ Sbjct: 199 DQEVKIIADTFFGEIAKIAKIDQNKKIATVEFEFFGRINTLDLNFNDIQ 247 >UniRef50_Q94AA3 AT3g09210/F3L24_8 n=6 Tax=rosids RepID=Q94AA3_ARATH Length = 333 Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 60/174 (34%) Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIG---GTSDR----PAPISDKEVDAIMNRLQQ 117 FPG + ++ ++N +R V V GFIG G + R P P+ D +++AI + ++ Sbjct: 154 FPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAKE 213 Query: 118 VGDK-------------------------------------------PRPKTL------- 127 +K PR TL Sbjct: 214 AQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATETKAK 273 Query: 128 ---FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G VRV G FA+F G +++++ + ++ V ++FG+ T VE+D +++ Sbjct: 274 KKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINEL 327 >UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 Tax=Chlorobiaceae RepID=Q3AU98_CHLCH Length = 197 Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEV--MVPTEEVVEIRGGQRRKSERKF 64 + WY V S +E +V +L E EV +P E + +++K Sbjct: 8 QNWYAVYVRSRYEKKVYQALLER-----------EVNSFLPLYETIRQWSDRKKKVSEPL 56 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 F GYV V + M S ++ + V+ FIG +P+ I+++E++ + +++ R Sbjct: 57 FRGYVFVNIAMQQESIKVLDT-EGVVKFIG-IGRKPSVIAEREIEWLKKLVREPEAISRT 114 Query: 125 KTLFEPGEMVRVNDGPFADFNGVV 148 G+ VRV GPF D GVV Sbjct: 115 VASLPAGQKVRVIAGPFKDMEGVV 138 >UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F316_9PROT Length = 172 Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%) Query: 27 REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 +E + N+E EV +P G+ R FF GY+ V + +++ W +RS Sbjct: 15 QESLAAANLERQGFEVYLPMINTRISHAGKVSWQPRPFFAGYLFVHLSIDEQRWTTIRST 74 Query: 87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ---VGDKPRPKTLFEPGEMVRVNDGPFAD 143 V+ + + P P+SD+ + + R + + P++ F GE VR+ DG Sbjct: 75 VGVLAPVAFGTFYP-PLSDQVIALLQARHDENGLIAVSSTPESPFRAGEKVRMLDGAMKG 133 Query: 144 FNGVVEEV 151 GV E+ Sbjct: 134 LEGVFIEM 141 >UniRef50_A5FN19 Transcription antitermination protein nusG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN19_FLAJ1 Length = 154 Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVV +E +VA L + + E P V+ +++K E F Y Sbjct: 3 WYVVYTKPKWEKKVAEKLTQ---------IGIECYCPLITQVKQWSDRKKKVEMPLFNSY 53 Query: 69 VLVQMVMND-ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 V +Q+ D S V + R + ++G +PA + D+E++ I N L+ + Sbjct: 54 VFIQIEDADRNSVFEVAGIVRYLFWLG----KPAVVRDEEINVIKNSLKASNIADISVSQ 109 Query: 128 FEPGEMVRVNDGPFADFNGVVEEV 151 + G+ +++ G F++ N +V+EV Sbjct: 110 IQVGDKIKLETGAFSNQNAIVQEV 133 >UniRef50_B8KUX9 Transcription termination factor nusG domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX9_9GAMM Length = 214 Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 24/171 (14%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER- 62 A +RWYVV + EG VA S E + V +++R QR K ++ Sbjct: 18 AAPRRWYVVASKPRSEG-VAKSQLER-----------QGFVTCAPRIKLRKRQRGKWQQV 65 Query: 63 --KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG-GTSDRPAPISDKEVDAIMNRLQQVG 119 FPGY+ V + + +RS +G + G P P +A+M L +G Sbjct: 66 IEPLFPGYLFVALRLGVDDPAPIRSTLGCIGLVRMGREFVPVP------EAVMQPLLSIG 119 Query: 120 DKP-RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 + P + +F+PG+ VR GPF +G+ ++ + R +V +++ G + Sbjct: 120 ESPDASEAVFQPGQAVRFEAGPFEGLSGIF-KMPKGQDRAEVLITLLGSSA 169 >UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITB0_ACIBL Length = 182 Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 16/172 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRKSERKFFPG 67 W+ VQ E RVA LR+ ++ E +P V + G + FPG Sbjct: 14 WFAVQTRHRHEKRVAERLRQ-------SEI--ETFLPIHRAVHRWKNGINAEVNLPLFPG 64 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ ++ L+R P V+ I +S+ P PI D E+ + RL K P Sbjct: 65 YLFTRL-RGSQRIPLLRE-PGVIA-IAASSNSPTPIGDNEIAQL--RLVAESVKAEPHPF 119 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ V+V GP G++ E R+ VSV I R+ V++ ++E Sbjct: 120 LAIGQQVKVVAGPLFGMEGILIRKKSE-YRVVVSVKIIMRSVAVDVSELEIE 170 >UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionales RepID=Q7MMR1_VIBVY Length = 168 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 19/178 (10%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++ G + R ++H++ +E + PT EV +I G+R+ FP Sbjct: 2 KKWYLLYCKRGEQIRA----KQHLENQGVECFY-----PTIEVEKILRGKRQIKSEPLFP 52 Query: 67 GYVLVQMVMN-DASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI--MNRLQQVGDKP- 122 Y+ V+ ++ VRS V+ F+ A + + D I + L+Q G + Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFV----KFGAHPKELQGDLIYELKLLEQEGHQSA 108 Query: 123 -RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + L +PG+ ++V G FA + +E D E +R + V + + PV ++ S +E Sbjct: 109 LQGSNLPKPGDSIKVKSGQFAGIEAIFQEQDGE-TRSIMLVKMISQTVPVSIENSDLE 165 >UniRef50_Q2GD85 Putative transcription termination/antitermination factor NusG n=2 Tax=Neorickettsia RepID=Q2GD85_NEOSM Length = 176 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS + W V++ SG E +V ++ + DLF +V + + Sbjct: 4 MSSSSDHTWCVLRVRSGSESKVCDLIKSRCS-DEVVDLFSPALVKFDA----------SA 52 Query: 61 ERKFFPGYVLVQMVMNDA---SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 ++F PGYV V++V A ++RS+ + + P +SDK++D + N + Sbjct: 53 SKRFLPGYVFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLS 112 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 P + G V + F G V+E+D S+ KV + G+ V + Q Sbjct: 113 PEVTPESGKI-SVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQ 171 Query: 178 VE 179 ++ Sbjct: 172 LK 173 >UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIA3_EGGLE Length = 170 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 9/174 (5%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +G E V + ++ +D+ E VP EV + GQ R FPGY Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP--RPKT 126 ++V D +R VP ++ P+ EV A ++ + G + + Sbjct: 58 LIVVTDRVDELESQLRRVP-AFAWVLSNDGGFVPLERDEV-AWIDAFTEKGHRTVGVSEG 115 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + E G+ + V GP G + +++ K + + +FGR ++ V K Sbjct: 116 VIE-GDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >UniRef50_Q6MDM7 Putative transcription antitermination factor NusG n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDM7_PARUW Length = 67 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR 53 +WYVVQ S E +V +L EH++L M ++++PTE V E++ Sbjct: 3 KWYVVQVLSTHEKKVKKALEEHLELKGMSGEIEQILLPTENVSEVK 48 >UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT Length = 186 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 39/193 (20%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS- 60 +E P+ +WY ++A E A LR+ ++ +V P V I+ RR Sbjct: 13 AEIPEAKWYCLRAQPKHEHIAAARLRQCEEI--------QVFCPR---VRIQRSTRRGLV 61 Query: 61 --ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFI-----------GGTSDRPAPISDKE 107 FP Y+ + S LVRS V G + G D A + D E Sbjct: 62 WFTEALFPNYLFARFEWVQ-SHALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYMEDAE 120 Query: 108 VDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 + + + + G+ V + +GPF NGVV+++ + R+KV + + G Sbjct: 121 LKTVSFNIDE-------------GDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGG 167 Query: 168 ATPVELDFSQVEK 180 AT V+L + V K Sbjct: 168 ATEVDLCLTSVFK 180 >UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UA20_SINMW Length = 219 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K W+ ++ ++G E V SL + + +VP + ++R + R E + Sbjct: 49 KAPWFALRVWTGREKTVEKSL---------DIMAVRSLVPMRKGPDLRR-RGRVIEGQMM 98 Query: 66 P---GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG--D 120 P GYVLVQM+ + V V+ +GG +RP +SDKEV+ N L + G D Sbjct: 99 PVIHGYVLVQMMALSEYLAGLLGVEHVIDVLGG-CERPMRLSDKEVNRF-NGLARNGNFD 156 Query: 121 KPRPKTL-FEPGEMVRVNDGPFADFNG-VVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 RP L GE V + GPF D V+ + + VS+ G PV + + + Sbjct: 157 WERPVDLVVRAGEPVLITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALL 216 Query: 179 EK 180 +K Sbjct: 217 KK 218 >UniRef50_B5HX00 Putative uncharacterized protein n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HX00_9ACTO Length = 158 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 131 GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 G V + DGPFA V E+D ++K + +FGR PVEL F+ Sbjct: 9 GASVTITDGPFATLRATVTEIDTPSQKVKGVIELFGRHAPVELSFT 54 >UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCE7_9ACTN Length = 217 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 13/177 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVV +G E ++L + I+ E + E P RGG+ E+ PGY Sbjct: 37 WYVVNVPTGRE----SALCKVIERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKTLLPGY 92 Query: 69 VLVQMVMNDASWHLVRSVP---RVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 V+V L+R VP RV+ + P++D E A ++ + G++ P Sbjct: 93 VIVATEQIGRVKRLLREVPEYTRVLNM----GESFVPLADGE-RAWIDAFTRKGERCVPM 147 Query: 126 TL-FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 ++ G+ V V GP ++ V+ +S V + I GR ++ V +A Sbjct: 148 SMGVMEGDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSRA 204 >UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomonadaceae RepID=Q4K6G2_PSEF5 Length = 239 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 23/175 (13%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+VQ + R +LR H G E VV+ G+R+ FPGY Sbjct: 84 WYLVQCKPRQDLRAEENLRRQ-GFHCYRPQRG-----CERVVQ---GRRQSGTESLFPGY 134 Query: 69 VLVQMVMNDASWHLVRS---VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 + + + +DASW +RS V R++ F G +P + ++++ R+ + Sbjct: 135 LFIAL-EHDASWAPLRSTRGVNRLVAFNG----QPLAVPVSLIESLRQRVTDMD-----T 184 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +L G V + +G FAD + E R+ + +++ + +EL S + K Sbjct: 185 SLPYKGTRVCITEGCFADLEAIFES-SIGDERVVLLLTLLNQQRRIELPLSSIRK 238 >UniRef50_P75049 Protein MG054 homolog n=2 Tax=Mycoplasma RepID=Y067_MYCPN Length = 320 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 2/84 (2%) Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQ 117 SE+ Y+ ++M+ ++ +W ++R+ P + G +G G P P+ + D + L+ Sbjct: 88 SEKNLLGRYIYIKMIYSEDAWRIIRNFPGITGIVGSSGRGALPTPLDQADADNLEQMLKG 147 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPF 141 + P+ + L +V ++ F Sbjct: 148 ISVNPKKRVLVTNTAIVEMDADKF 171 >UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3I2H8_9SPHI Length = 170 Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 12/143 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+V+ S E +VA LRE+ K EV +P E + +++K E+ F G Sbjct: 5 KWFVMYTASRSEKKVAKRLRENGK---------EVYLPIIEEIRQWSDRKKKVEKPLFNG 55 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV V+ N W ++ VP + F+ S + A + D+E++ I + ++ Sbjct: 56 YVFVKTTRNQL-WECLQ-VPGAVKFV-HFSGQHATVRDEELETIERIISTGVAVESDGSV 112 Query: 128 FEPGEMVRVNDGPFADFNGVVEE 150 E GE V V G G V E Sbjct: 113 IEAGEKVEVIGGALQHMTGEVIE 135 >UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV4_9GAMM Length = 169 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 14/171 (8%) Query: 9 WYVVQAFSGFEGRVATSL-REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 W+++Q S EGR +L R+ +K P +V ++ G R E FPG Sbjct: 4 WFLLQTKSKQEGRAVENLERQGVK----------SFCPMIKVEKLSRGSRVVKEEALFPG 53 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ V + S VRS V F+ ++ P + + ++ +M R G+ +L Sbjct: 54 YLFVNFDQSSVSSTTVRSTRGVSHFV-TSAGLPVKVPESLINQLMLR-TDAGNDETVSSL 111 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 GE +++ DGPF N V + D ++ R V +++ + L F+ + Sbjct: 112 PSKGERLQIIDGPFRGLNAVFSQPDGDR-RAIVLINLLNQQVSASLPFASL 161 >UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTI0_CHIPD Length = 174 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/182 (21%), Positives = 86/182 (47%), Gaps = 18/182 (9%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +++ + +WYV+ + FE ++ L + D+ + V TE V + ++ Sbjct: 7 ITQQRESKWYVLYTYPLFEKKIGRQL-------ALIDIIHYLPVKTE--VRKWSDRLKRM 57 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E FP Y+ V+ + + + L +P V+ F+ R IS+ +++ I +++Q Sbjct: 58 EVPLFPNYIFVKTNLLNKTPIL--GIPGVVRFV-SVEGRAIAISEDDINKI-RQIEQSRQ 113 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS--IFGRATPVELDFSQV 178 ++++ G+ +R+ +G F+ G E+ +RL+V + + +A VE+ + Sbjct: 114 DVEIESVYNTGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDI 170 Query: 179 EK 180 EK Sbjct: 171 EK 172 >UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB35_9ACTN Length = 170 Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 10/161 (6%) Query: 23 ATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHL 82 A +L I ++D F VP EV + GQ + K FPGYV V+ Sbjct: 16 AAALIAKIAQGAVDDCF----VPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQIREA 71 Query: 83 VRSVPRVMGFIGGTSDRPAPISDKEV---DAIMNRLQQVGDKPRPKTLFEPGEMVRVNDG 139 + VP + D P++ EV +AI N V + + + E G+ V V G Sbjct: 72 LGRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEM--SEGVIE-GDCVMVIRG 128 Query: 140 PFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P + +D K V + +FGR + + V K Sbjct: 129 PLKGHEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169 >UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QI43_9RHIZ Length = 175 Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 3/159 (1%) Query: 23 ATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHL 82 A + RE + N++ E+ P R+S FPGY+ + D W Sbjct: 20 AQAHREFVAASNLKKQGYEIYAPVIRKTTRHARISRESLTPLFPGYLFARWTAPDMRWRP 79 Query: 83 VRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFA 142 + S + + + P+ + VDA+ R ++ G R ++ E G++VR GPF Sbjct: 80 ILSTVGIRSIV-RNGNEPSRLDGAIVDALKAR-EKDGVIVRAESQREIGQIVRFARGPFD 137 Query: 143 DFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + E+ +K RL V +++ R T V + Q+ Sbjct: 138 GIAAEIVEL-CDKDRLVVLMTLLNRPTKVTVLEDQLSAC 175 >UniRef50_UPI00016C0B0F transcription antitermination protein NusG n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0B0F Length = 55 Score = 42.7 bits (99), Expect = 0.006, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR 58 MSEA +WYVV +SG+E +V ++ + IK NM++L +V +P E + G R Sbjct: 1 MSEA---KWYVVHTYSGYENKVKVNIEKAIKNRNMQELIQKVEIPMHNEEEEKNGTTR 55 >UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella burnetii RepID=A9ND88_COXBR Length = 167 Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 7/154 (4%) Query: 27 REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 +E I N+E + +P +V R G + FP Y+ + + ++ +W +RS Sbjct: 16 QERIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRYLFILLNIDKDNWGPIRST 75 Query: 87 PRVMGFI--GGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADF 144 V + GG PA + V + N P+ +LF+ G+ V++ DG A + Sbjct: 76 RGVSALVRFGGI---PAKVPPDFVQFLKNNETSASVPPK-VSLFQKGQRVQIIDGVMAGY 131 Query: 145 NGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 GV E K R+ + + + G+ T VE+ V Sbjct: 132 EGVFEMYSGAK-RVTLLLDMVGKVTRVEVPLDSV 164 >UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH43_DESAA Length = 178 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 17/175 (9%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY + S E V ++ ++E + P ++ R +R+ + FP Sbjct: 10 KQWYALYTKSRHEACV----NNYLAARSIESFY-----PQMRILSRRKDRRKMIDVPMFP 60 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ V+ + + P + IG T A D ++ L+ V K +T Sbjct: 61 GYLFVRAALRSRQHLSILKAPGAVTLIGNTRGAIAIPEDT-----ISSLRIVSQKEALET 115 Query: 127 --LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G++V + GPFA GV + ++ V++ G++ VE+ + V+ Sbjct: 116 GPCYHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169 >UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus RepID=Q1D5E3_MYXXD Length = 168 Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 9/123 (7%) Query: 59 KSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 K++ FPGY+ + + + +VR+ P V+ +GG + P + +E++AI R+ Sbjct: 49 KAKLPLFPGYLFCRYQPLN-PYRIVRA-PGVIRLLGGDAG-PEAVPAQELEAI-RRVADS 104 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLK--VSVSIFGRATPVELDFS 176 G P G+ VR+ +GP G + KS+L+ VSV + R+ VE+ Sbjct: 105 GVSSNPCDYLRVGQRVRIIEGPLTGLEG---SLVTSKSQLRFIVSVGLLQRSVSVEVSAE 161 Query: 177 QVE 179 Q+E Sbjct: 162 QLE 164 >UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonadaceae RepID=A0KGQ9_AERHH Length = 183 Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 17/171 (9%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY+ E R R H++ +E + P E+ ++R G+R FP Sbjct: 19 KKWYLAYCKPKEEARA----RAHLEAQGIESYY-----PMVEIEKLRRGKRVPVREPMFP 69 Query: 67 GYVLVQMVMND---ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 Y+ + + + + + R + R++ F IS + V +M+R + Sbjct: 70 NYLFIYVDLEEVTPVTLKSTRGISRIIHF----GREWTSISSQLVYQLMSRDDSDEARAS 125 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 +L G+ V + GP A F + E D +K R + VS+ + T D Sbjct: 126 YASLPTQGDKVLIESGPLAGFEAIYLEPDGDK-RAILLVSLLNQETSSSFD 175 >UniRef50_A9NQH7 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9NQH7_PICSI Length = 379 Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 28/44 (63%) Query: 51 EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG 94 +++ G +S+++ FPGY+ ++ +N +R+ PRV GF+G Sbjct: 123 KLKNGSYSESKKRMFPGYLFIRCPLNKEIHDFIRNTPRVRGFVG 166 >UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGB9_CHIPD Length = 185 Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 14/149 (9%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSL-REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 E WY V +E +VA +L R+ I E P V +++ E Sbjct: 2 EQKTHTWYAVYTKPRWEKKVADALVRKQI----------ETYCPINRVTHQWSDRKKIVE 51 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 F YV V++ + + LVR ++ F+ +PA I D EV+ I L++ D Sbjct: 52 EPLFKSYVFVRIPEDKKT--LVRETSGIVNFVYWLG-KPASIPDHEVELIKRFLREYQDV 108 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEE 150 + + +++R+ GP +G V E Sbjct: 109 QVERFPIQEDDLIRITAGPLMHQHGRVVE 137 >UniRef50_A4EGG1 Transcriptional antitermination protein, putative n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGG1_9RHOB Length = 172 Score = 39.7 bits (91), Expect = 0.046, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 8/142 (5%) Query: 42 VMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPA 101 ++P EV + R + FPGY+ + +W + V + GT +PA Sbjct: 34 TLMPLREVSQHARYGLRTVRQPLFPGYLFFSVTARQINWPAAANTRGVTRIVVGTDGQPA 93 Query: 102 PIS---DKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRL 158 + + AI +GD +T G+ V V +GPFA + V D R+ Sbjct: 94 RLPADIAAGLLAITTEDGMLGDVADLQT----GDQVGVVNGPFAGWMAKVVSAD-TPDRI 148 Query: 159 KVSVSIFGRATPVELDFSQVEK 180 ++ V + GR T V + +EK Sbjct: 149 QLLVDVMGRETAVNIAGRDLEK 170 >UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWJ1_METI4 Length = 185 Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 3/152 (1%) Query: 27 REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 +E + + N++ EV P + +IR + FPGY+ + + + VRS Sbjct: 20 KEKLAVENLKKENIEVFFPQFQYQKIRSRKTSLVLEPLFPGYLFAKFNLY-SKLTFVRST 78 Query: 87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNG 146 V + S P I D ++ + + + G K + + + G + + +GPF ++ Sbjct: 79 KGVRKVVHFGSSYPV-IPDSFIEELRIQFGEEGIKTIRERI-DVGSTINIAEGPFQGYSC 136 Query: 147 VVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +V K R++V + GRA +E++ ++ Sbjct: 137 IVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168 >UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01XJ6_SOLUE Length = 179 Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust. Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 16/175 (9%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 P W+ V+ S FE + A LRE + P+ + + ++ Sbjct: 16 PALPWFAVKVRSNFEKKSADILREKGY---------QEFAPSYPSRRYWSDRVKVIDQPL 66 Query: 65 FPGYVLVQMVMNDASWHL-VRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV + N L V +++GF G + AP+ + E+ A + L Sbjct: 67 FPGYVFCRFHPNHFLPVLQTAGVVQIVGFGG----KLAPVDEVEL-ASLRTLMNSSLPIS 121 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G V + GP A G++EE+ + R+ VS+S+ R+ E+D + V Sbjct: 122 QREFLHVGRKVLIRRGPLAGVEGILEEIR-KGYRIVVSISLLQRSVTAEIDANWV 175 >UniRef50_A3TRT6 Putative secreted protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TRT6_9MICO Length = 438 Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 102 PISDKEVDAIMNRLQQVGDKPRPKTL-------FEPGEMVRVNDGPFADFNGVVEEVDYE 154 P K V A+ L ++ P P T F PG+ V++ G + + V +VD Sbjct: 351 PTVPKSVPALPVPLPKITATPLPSTTVAVDPDPFSPGDTVKITAGQYLGLSAKVLKVDTV 410 Query: 155 KSRLKVSVSIFGRATPVELDFSQV 178 K+ + V V + G PV L +S V Sbjct: 411 KNTVTVEVVVLGIKLPVVLPYSSV 434 >UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUS0_CHIPD Length = 174 Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust. Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 14/173 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV + FE +VA + + H + P + ++ E FP Sbjct: 14 KWYVAYTRANFERKVAKDIVDQQIEHYL---------PLRRETRKWSDRLKQIEVPLFPN 64 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ V++ + L +P V+ + S +P +S++E+ I ++++ G + Sbjct: 65 YIFVKIKLQHKVNIL--GIPGVLSLV-SFSGQPVSVSEREIQHI-RKIEERGQDIALEYY 120 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ VR+ G F G++ + R + + +A VE++ Q+E+ Sbjct: 121 YCVGDRVRITQGIFTGMEGILLR-KSGQMRFVLKLPAISQAVSVEIEGDQLER 172 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AA01 Transcription antitermination protein nusG n=217... 251 8e-66 UniRef50_P57151 Transcription antitermination protein nusG n=17 ... 234 1e-60 UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 ... 231 8e-60 UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 ... 230 2e-59 UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 ... 221 1e-56 UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 T... 216 3e-55 UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 T... 212 5e-54 UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 T... 211 8e-54 UniRef50_P65591 Transcription antitermination protein nusG n=84 ... 210 2e-53 UniRef50_D1CD65 Transcription antitermination protein nusG n=5 T... 209 4e-53 UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 ... 209 4e-53 UniRef50_B4R8J9 Transcription antitermination protein nusG n=157... 208 6e-53 UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 T... 207 1e-52 UniRef50_Q87A27 Transcription antitermination protein nusG n=71 ... 207 2e-52 UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 T... 207 2e-52 UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 T... 206 3e-52 UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 T... 205 6e-52 UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 T... 205 7e-52 UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 ... 201 6e-51 UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 T... 200 2e-50 UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 T... 199 3e-50 UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 T... 199 4e-50 UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 ... 199 4e-50 UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 T... 198 5e-50 UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 T... 198 1e-49 UniRef50_D1BP79 Transcription antitermination protein nusG n=5 T... 197 2e-49 UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 T... 196 2e-49 UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212... 196 2e-49 UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 T... 196 3e-49 UniRef50_P27309 Transcription antitermination protein nusG n=58 ... 194 1e-48 UniRef50_P35872 Transcription antitermination protein nusG n=13 ... 194 1e-48 UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 T... 193 2e-48 UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 T... 193 2e-48 UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 T... 192 4e-48 UniRef50_B3E158 Transcription antitermination protein nusG n=3 T... 191 7e-48 UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 ... 191 1e-47 UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 T... 191 1e-47 UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 ... 191 1e-47 UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 ... 190 1e-47 UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 ... 190 2e-47 UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 T... 190 2e-47 UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 T... 190 3e-47 UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 T... 188 7e-47 UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 T... 188 7e-47 UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 ... 187 1e-46 UniRef50_A6CA55 Transcription antitermination protein nusG n=1 T... 187 2e-46 UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 ... 187 2e-46 UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 ... 186 3e-46 UniRef50_A0Q872 Transcription antitermination protein nusG n=11 ... 186 3e-46 UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 T... 186 3e-46 UniRef50_B3T6R2 Putative transcription termination factor nusG n... 186 3e-46 UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 ... 186 3e-46 UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococ... 186 4e-46 UniRef50_C4LL90 Transcription antitermination protein nusG n=5 T... 186 4e-46 UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 T... 185 5e-46 UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 T... 185 7e-46 UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 T... 185 8e-46 UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 T... 184 9e-46 UniRef50_D2MPP9 Transcription termination/antitermination factor... 184 1e-45 UniRef50_P52852 Transcription antitermination protein nusG n=51 ... 183 2e-45 UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula st... 183 2e-45 UniRef50_C2KN14 Transcription antitermination protein nusG n=3 T... 183 3e-45 UniRef50_C8NX40 Transcription antitermination protein nusG n=1 T... 182 4e-45 UniRef50_A7BC06 Transcription antitermination protein nusG n=2 T... 180 2e-44 UniRef50_B0S060 Transcription antitermination protein nusG n=5 T... 180 3e-44 UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 T... 179 3e-44 UniRef50_P68893 Transcription antitermination protein nusG n=32 ... 178 7e-44 UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 ... 178 8e-44 UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 T... 178 9e-44 UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 T... 177 1e-43 UniRef50_P36265 Transcription antitermination protein nusG n=48 ... 176 2e-43 UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 T... 175 5e-43 UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 ... 174 2e-42 UniRef50_B3EL56 Transcription antitermination protein nusG n=8 T... 173 2e-42 UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 T... 173 2e-42 UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 T... 173 2e-42 UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 T... 173 3e-42 UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 T... 172 4e-42 UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 T... 170 2e-41 UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 T... 170 3e-41 UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 T... 169 3e-41 UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 T... 168 6e-41 UniRef50_A5TS63 Transcription antitermination protein nusG n=10 ... 166 2e-40 UniRef50_B0A697 Transcription antitermination protein nusG n=1 T... 166 2e-40 UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 ... 166 2e-40 UniRef50_O83264 Transcription antitermination protein nusG n=4 T... 165 6e-40 UniRef50_C7NC81 Transcription antitermination protein nusG n=10 ... 165 9e-40 UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 T... 164 1e-39 UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 T... 164 1e-39 UniRef50_C0W699 Transcription antitermination protein nusG n=1 T... 163 2e-39 UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 T... 163 2e-39 UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 T... 161 8e-39 UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 T... 161 1e-38 UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 T... 160 2e-38 UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 ... 158 1e-37 UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 T... 156 2e-37 UniRef50_O51355 Transcription antitermination protein nusG n=22 ... 155 8e-37 UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 T... 151 1e-35 UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacil... 149 3e-35 UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycopla... 149 3e-35 UniRef50_O84322 Transcription antitermination protein nusG n=14 ... 149 3e-35 UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=My... 148 9e-35 UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=My... 146 2e-34 UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 T... 146 3e-34 UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 T... 143 2e-33 UniRef50_A5CC98 Transcription antitermination protein nusG n=2 T... 143 4e-33 UniRef50_A6FV14 Transcription antitermination protein nusG n=2 T... 137 2e-31 UniRef50_B5Y935 Transcription antitermination protein nusG n=1 T... 137 2e-31 UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 T... 135 5e-31 UniRef50_UPI00016C58F1 transcription antitermination protein Nus... 134 1e-30 UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 T... 134 1e-30 UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 T... 131 1e-29 UniRef50_A3WUF1 Transcriptional antitermination protein, putativ... 130 2e-29 UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 T... 129 5e-29 UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 T... 129 6e-29 UniRef50_C6PET8 Transcription antitermination protein nusG n=1 T... 128 9e-29 UniRef50_Q982S4 Transcription antitermination protein nusG n=1 T... 128 9e-29 UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 T... 127 1e-28 UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 T... 127 2e-28 UniRef50_P29397 Transcription antitermination protein nusG n=12 ... 126 3e-28 UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacteriu... 126 4e-28 UniRef50_C2NS75 Transcription antitermination protein nusG n=2 T... 126 4e-28 UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 T... 124 1e-27 UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitro... 123 3e-27 UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 123 3e-27 UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella ... 122 6e-27 UniRef50_O67757 Transcription antitermination protein nusG n=7 T... 121 9e-27 UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 T... 121 1e-26 UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteri... 121 2e-26 UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella ... 121 2e-26 UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 T... 120 2e-26 UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomon... 120 2e-26 UniRef50_C8PLY0 Transcription antitermination protein, NusG fami... 119 3e-26 UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria Rep... 119 3e-26 UniRef50_Q98R28 TRANSCRIPTION ANTITERMINATION PROTEIN n=1 Tax=My... 119 4e-26 UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerot... 117 2e-25 UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobac... 116 4e-25 UniRef50_UPI0001692BF2 putative transcription antiterminator n=1... 115 7e-25 UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 T... 115 8e-25 UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomon... 114 9e-25 UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 T... 114 1e-24 UniRef50_B1AJM2 Transcription termination/antitermination factor... 113 3e-24 UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostri... 113 3e-24 UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 T... 112 5e-24 UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 T... 112 6e-24 UniRef50_Q1Q029 Similar to transcription antitermination protein... 112 6e-24 UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Cl... 112 6e-24 UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 T... 111 8e-24 UniRef50_Q4A648 Transcription antitermination protein n=1 Tax=My... 111 8e-24 UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobac... 111 1e-23 UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 T... 111 1e-23 UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 T... 110 3e-23 UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus... 108 6e-23 UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 T... 108 8e-23 UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofu... 108 9e-23 UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionale... 108 1e-22 UniRef50_B9HCH7 Predicted protein n=1 Tax=Populus trichocarpa Re... 107 1e-22 UniRef50_Q2GD85 Putative transcription termination/antiterminati... 106 4e-22 UniRef50_A4YU22 Transcription antitermination protein nusG n=1 T... 106 4e-22 UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanell... 104 1e-21 UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 T... 104 1e-21 UniRef50_B6TZG2 Transcription termination factor nusG family pro... 104 2e-21 UniRef50_B8KUX9 Transcription termination factor nusG domain pro... 104 2e-21 UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 T... 103 3e-21 UniRef50_A9BF38 Transcription antitermination protein nusG n=1 T... 102 5e-21 UniRef50_Q10BA7 Os03g0825500 protein n=3 Tax=Oryza sativa RepID=... 101 2e-20 UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacte... 100 2e-20 UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 T... 100 5e-20 UniRef50_A9SPI1 Predicted protein n=1 Tax=Physcomitrella patens ... 99 8e-20 UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 T... 97 2e-19 UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Ag... 96 5e-19 UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacte... 95 8e-19 UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 T... 95 1e-18 UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoeki... 95 1e-18 UniRef50_A5FN19 Transcription antitermination protein nusG n=1 T... 92 8e-18 UniRef50_B8IEU5 Putative uncharacterized protein n=1 Tax=Methylo... 91 2e-17 UniRef50_Q7NAK3 NusG n=2 Tax=Mycoplasma gallisepticum RepID=Q7NA... 90 4e-17 UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobiu... 90 4e-17 UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1... 90 4e-17 UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verru... 89 5e-17 UniRef50_Q8EUN7 Transcription antitermination factor n=1 Tax=Myc... 86 7e-16 UniRef50_Q94AA3 AT3g09210/F3L24_8 n=6 Tax=rosids RepID=Q94AA3_ARATH 84 2e-15 UniRef50_UPI00016B21AA transcription antitermination factor n=1 ... 78 2e-13 UniRef50_C5B0S5 Putative uncharacterized protein n=1 Tax=Methylo... 75 9e-13 UniRef50_P36262 Transcription antitermination protein nusG (Frag... 75 9e-13 UniRef50_UPI0001BCE1C5 transcription antitermination protein Nus... 74 3e-12 Sequences not found previously or not previously below threshold: UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella ... 114 2e-24 UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 T... 104 1e-21 UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter ... 103 3e-21 UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collins... 102 7e-21 UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collins... 102 7e-21 UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 T... 101 9e-21 UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosoco... 101 9e-21 UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibac... 101 2e-20 UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonad... 100 2e-20 UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomon... 100 3e-20 UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma pro... 99 4e-20 UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas... 98 9e-20 UniRef50_A4EGG1 Transcriptional antitermination protein, putativ... 97 3e-19 UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga... 96 3e-19 UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idioma... 95 8e-19 UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga... 95 1e-18 UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiacea... 95 1e-18 UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteob... 95 1e-18 UniRef50_Q73PT3 Transcription antitermination protein, NusG fami... 94 2e-18 UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga... 93 5e-18 UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 ... 93 5e-18 UniRef50_B6GA74 Putative uncharacterized protein n=1 Tax=Collins... 93 6e-18 UniRef50_Q2CAE9 Transcriptional antitermination protein, putativ... 93 6e-18 UniRef50_B5YJ95 Transcription termination factor NusG domain pro... 92 7e-18 UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium ... 91 2e-17 UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdema... 90 3e-17 UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein... 90 3e-17 UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobi... 90 5e-17 UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium El... 89 7e-17 UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus ... 89 8e-17 UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus Rep... 89 8e-17 UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanell... 88 9e-17 UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus S... 88 1e-16 UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=... 88 1e-16 UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas ... 88 1e-16 UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobi... 88 2e-16 UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterob... 87 3e-16 UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromon... 85 1e-15 UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira ... 85 1e-15 UniRef50_D1PRH1 Putative transcription termination factor NusG n... 85 1e-15 UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus... 84 2e-15 UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus ... 83 3e-15 UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 T... 83 3e-15 UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp... 83 3e-15 UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lenti... 83 5e-15 UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus S... 82 7e-15 UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma li... 81 2e-14 UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga... 80 3e-14 UniRef50_A9NQH7 Putative uncharacterized protein n=1 Tax=Picea s... 80 4e-14 UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacte... 79 6e-14 UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bactero... 79 7e-14 UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Gl... 78 2e-13 UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabac... 78 2e-13 UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga... 78 2e-13 UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobi... 78 2e-13 UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 T... 77 3e-13 UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia ... 76 6e-13 UniRef50_UPI0001972DAA NusG antitermination factor n=1 Tax=Clost... 75 8e-13 UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobac... 74 1e-12 UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like pro... 74 2e-12 UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavo... 73 5e-12 UniRef50_A4E6I1 Putative uncharacterized protein n=1 Tax=Collins... 72 9e-12 UniRef50_B0SHW0 Transcription antiterminator n=2 Tax=Leptospira ... 71 2e-11 UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter ... 71 2e-11 >UniRef50_P0AA01 Transcription antitermination protein nusG n=217 Tax=Proteobacteria RepID=NUSG_ECOL6 Length = 181 Score = 251 bits (641), Expect = 8e-66, Method: Composition-based stats. Identities = 180/181 (99%), Positives = 181/181 (100%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNME+LFGEVMVPTEEVVEIRGGQRRKS Sbjct: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKS 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD Sbjct: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK Sbjct: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 Query: 181 A 181 A Sbjct: 181 A 181 >UniRef50_P57151 Transcription antitermination protein nusG n=17 Tax=Proteobacteria RepID=NUSG_BUCAI Length = 181 Score = 234 bits (597), Expect = 1e-60, Method: Composition-based stats. Identities = 145/180 (80%), Positives = 169/180 (93%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M E+ KKRWYV+QAFSGFE RVA S+REH+KL+ MEDLFGEVMVP++EVVEIRGGQRRKS Sbjct: 1 MHESQKKRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKS 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E KFFPGYVL+QM M D++WHL+R+VP+V+GFIGG SD+P+PISDKEV+ I+NRL+++G+ Sbjct: 61 EYKFFPGYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGN 120 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KPRPKTLFEPGEM+RVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR+TPVELDF QVEK Sbjct: 121 KPRPKTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 Tax=Bacteria RepID=NUSG_PASMU Length = 183 Score = 231 bits (590), Expect = 8e-60, Method: Composition-based stats. Identities = 142/182 (78%), Positives = 159/182 (87%), Gaps = 1/182 (0%) Query: 1 MSEAP-KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M+E KKRWYV+QAFSGFEGRVAT+LRE+IKLH MED FGEV+VPTEEVVE G+RRK Sbjct: 1 MTETTTKKRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRK 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 SERKFFPGYVLVQM MND +WHLVRSVPRVMGFIGGT+D+PAPIS +E D I+NRLQ+ Sbjct: 61 SERKFFPGYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESS 120 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +KPR + F+PGE VRV +GPFADFNG VEEVDYEK RLKVSVSIFGRATPVEL+FSQVE Sbjct: 121 EKPRHRKEFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVE 180 Query: 180 KA 181 K Sbjct: 181 KT 182 >UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 Tax=cellular organisms RepID=Q01SW9_SOLUE Length = 239 Score = 230 bits (587), Expect = 2e-59, Method: Composition-based stats. Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 1/180 (0%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 E+ K+WY++ +SGFE +V SLR D G++++PTEEVVE+R G++ S+ Sbjct: 61 DESSAKKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSK 120 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 R +PGYVLV+M MNDA WH V++ PRV GF+GG + P P+S EV++I+ R ++ Sbjct: 121 RLVYPGYVLVEMEMNDALWHEVKNTPRVTGFVGG-GNSPVPLSADEVNSILYRQASSAER 179 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 PRPK FE + VR+ DGPFA+F+G V+EV+ E+ L+V V+IFGRATPVEL+F QVEK Sbjct: 180 PRPKMTFEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239 >UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=A6W3A4_MARMS Length = 177 Score = 221 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 122/175 (69%), Positives = 151/175 (86%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 KRWYVVQA+SG+E V SL E +++ E+ FG+++VPTEEVVEIR G++RKSERKF+P Sbjct: 3 KRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKFYP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLVQM MNDASWHLV+ RV+GFIGGT+D+P+PI+ +E DAI+ R+ DKPRPKT Sbjct: 63 GYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRPKT 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 LFE GE+VRVN+GPFADFNGVVEEVDY+KSR+KV+V IFGR+TPV+L+FSQVEKA Sbjct: 123 LFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEKA 177 >UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 Tax=Bacteria RepID=A5D5K3_PELTS Length = 175 Score = 216 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 124/175 (70%), Gaps = 3/175 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WYVV +SG+E +V +L + I NMED ++VP E+ VEI+ G+++ S+RK F Sbjct: 2 EKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKIF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYVLV+M+M D SW++VR+ P V GF+G + RP P++D E I+ ++ ++PR + Sbjct: 62 PGYVLVEMIMTDDSWYVVRNTPGVTGFVG-SGSRPIPLNDAEARQIIRQMG--VEEPRTR 118 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE +RV GPF +F G +EE++ EKS++KV +S+FGR TPVELDF+QVEK Sbjct: 119 VDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEK 173 >UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE5_HALO1 Length = 189 Score = 212 bits (540), Expect = 5e-54, Method: Composition-based stats. Identities = 87/179 (48%), Positives = 121/179 (67%), Gaps = 2/179 (1%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + K +WYVV +G+E RV +L++ +D GE++VPT V+E+ G+R+ S + Sbjct: 13 QNDKFKWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTK 72 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 KFFPGY+ VQM D+ +HL+R+ P+V GF+GG + P P+ + E+ I N + KP Sbjct: 73 KFFPGYIFVQMEFTDSVYHLIRNTPKVTGFVGGNT--PQPVPESEISVIHNTMSDNHSKP 130 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 RPK +FE G+ VRV DGPFA F VEEV +K +L+V V+IFGRATPVELDF+QVEKA Sbjct: 131 RPKVMFEQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEKA 189 >UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2W0_ACIFD Length = 243 Score = 211 bits (538), Expect = 8e-54, Method: Composition-based stats. Identities = 81/178 (45%), Positives = 114/178 (64%), Gaps = 5/178 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +SG+E RV +L I+ +ED EV +P E+V E++ G+R K +RK FPG Sbjct: 67 EWYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPG 126 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK-- 125 YVLV+ M+D W +R+ P + F+G + +P P+S KEV+A+ + +P+P+ Sbjct: 127 YVLVRAEMDDEVWSAIRNTPGITSFVG-SGSKPVPLSRKEVEAMFSFATPEELRPQPQRR 185 Query: 126 --TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 FE GE VRV +GP ADF G V EV+ ++ +LKV +IFGR TPVELDF+QV KA Sbjct: 186 STQEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSKA 243 >UniRef50_P65591 Transcription antitermination protein nusG n=84 Tax=Bacteria RepID=NUSG_NEIMA Length = 178 Score = 210 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 107/174 (61%), Positives = 136/174 (78%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYVVQA+SGFE V L E I M D FG+++VP E+VV+IR G++ SERK +P Sbjct: 3 KKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKSYP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLV+M M D SWHLV+S PRV GFIGG ++RP PIS +E + I+ ++Q +KP+PK Sbjct: 63 GYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKPKV 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE G+ VRVN+GPFADFNGVVEEV+YE+++L+VSV IFGR TPVEL+FSQVEK Sbjct: 123 EFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEK 176 >UniRef50_D1CD65 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=D1CD65_THET1 Length = 201 Score = 209 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 82/174 (47%), Positives = 120/174 (68%), Gaps = 3/174 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYV+ +SG+E +V L+ ++ M D +++VPT E +EIR G+R K ++K FP Sbjct: 28 FQWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFP 87 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLV+M M+DA+W++VR P V GF+G + +P P+ +KEV+ I+ R+ + + P+ K Sbjct: 88 GYVLVRMRMDDAAWNVVRYTPGVTGFVG-SGTKPTPLDEKEVEKILQRMSE--EPPKVKM 144 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GE VR+ DGPF DF G V+E++ EK ++KV +SIFGR TPVELDF QVEK Sbjct: 145 SLRLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEK 198 >UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 Tax=Bacteria RepID=NUSG_BACHD Length = 178 Score = 209 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 123/177 (69%), Gaps = 3/177 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K WYVV +SG+E +V T+L + ++ +M D VMVP EE E++ G+ ++ RK F Sbjct: 2 EKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKVF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 PGYVLV+MVM D SW++VR+ P V GF+G G +P P+ +EVDAI+ ++ + ++ + Sbjct: 62 PGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQMG-MQEERQ 120 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + F+ E V+V +GPFA+F G +EE+ +K +LKV V++FGR TPVEL+F+Q+EK Sbjct: 121 VEIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEK 177 >UniRef50_B4R8J9 Transcription antitermination protein nusG n=157 Tax=Proteobacteria RepID=B4R8J9_PHEZH Length = 189 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 96/177 (54%), Positives = 137/177 (77%), Gaps = 1/177 (0%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 P+ +WY+V A+S FE +VA S+RE + +E+ F E++VPTE+VVEIR G++ SERK Sbjct: 12 NPRHKWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERK 71 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FFPGYVLV+M M D ++HL+++ P+V GF+G + +P P+S+KEV+ I+ +++ ++P+ Sbjct: 72 FFPGYVLVKMEMTDEAYHLIKNTPKVTGFLG-SGSKPIPVSEKEVERIVGAIEEGVERPK 130 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P FE GE VRV DGPFA FNG VE+VD E++RL+V+VSIFGRATPVEL++ QVEK Sbjct: 131 PTITFEIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEK 187 >UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=C8XBG0_NAKMY Length = 306 Score = 207 bits (527), Expect = 1e-52, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 10/183 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +++G+E +V T+L IK +MED ++ VPTEEV EI+ GQR++ +RK +PG Sbjct: 123 EWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPG 182 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ----------Q 117 Y+LV+M + D SW VR+ P V GF+G T+ +P+ ++ EV I+ Sbjct: 183 YILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTP 242 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 R + F GE V V DGPFA + EV+ + +LKV VSIFGR TPVEL FSQ Sbjct: 243 GSAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQ 302 Query: 178 VEK 180 V K Sbjct: 303 VAK 305 >UniRef50_Q87A27 Transcription antitermination protein nusG n=71 Tax=Proteobacteria RepID=NUSG_XYLFT Length = 185 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 142/184 (77%), Gaps = 9/184 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 KRWYVV A+SGFE VA +LR+ I ++D FG+V+VP EEVVE+R GQ+R+SE KFFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61 Query: 67 GYVLVQMV---------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 GYVL+Q+ +++ WHLV+ P+VMGFIGGT+DRP PIS E D I+ R+Q Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQD 121 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 +KPRPK LFEPG+MVRV DGPF DF+G+VEEV+YEK+RL+V+V IFGR TPV+LDF Q Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQ 181 Query: 178 VEKA 181 V+K+ Sbjct: 182 VQKS 185 >UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 Tax=Proteobacteria RepID=C4XIP4_DESMR Length = 187 Score = 207 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 95/180 (52%), Positives = 129/180 (71%), Gaps = 1/180 (0%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 + E RWY+V +SGFE RV +LRE ++ EV+VPTE+++E+ G+++ S Sbjct: 8 VDEQSNARWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTS 67 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 RKF+PGYV+V+M M+D SWHLV+S+PRV GFIGG ++P P+ D E I++ + + Sbjct: 68 TRKFYPGYVMVKMAMDDNSWHLVQSIPRVTGFIGGK-NQPTPMRDSEAQKILSLMVSRQE 126 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PRPK FE G+ VRV DGPF FNGVVE+V+Y+K +L+VSVSIFGR TPVELDF QV K Sbjct: 127 QPRPKYHFERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 Tax=Proteobacteria RepID=Q2LQ92_SYNAS Length = 176 Score = 206 bits (524), Expect = 3e-52, Method: Composition-based stats. Identities = 86/172 (50%), Positives = 126/172 (73%), Gaps = 1/172 (0%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYVV +SGFE +V SL+E I+ M+ F ++++P E+VVE+ G+++ S+RKFFP Sbjct: 3 FKWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKFFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+LV+M ++D +WHLV+ P+V GFIG ++P+PI DK+V+ + R+ + KP+PK Sbjct: 63 GYILVKMELDDDTWHLVKDTPKVTGFIGSR-EKPSPIPDKDVELLKTRIDEGTLKPKPKF 121 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 FE G+ V + DGPF +F+GV++EV EK +L+V VSIFGR TPVELDF QV Sbjct: 122 KFEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173 >UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=B9KYX2_THERP Length = 198 Score = 205 bits (522), Expect = 6e-52, Method: Composition-based stats. Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 3/176 (1%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + WYV+ +SG+E +V +L ++ ++ D EV++P +E +EIRGGQR +RK Sbjct: 24 QQGEWYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKV 83 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVLV+M+++D SWH+VR+ P V GF+G +RP P+ E +AI+ ++P+ Sbjct: 84 FPGYVLVRMILDDESWHVVRNTPGVTGFVG-VGNRPVPLDRAEAEAIIR--GAKAEQPKV 140 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + PG++VR+ DGPF DF GVV+EVD EK +++V VS FGR TPV LDF QVE+ Sbjct: 141 RMTLLPGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196 >UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 Tax=Firmicutes RepID=B1I1L1_DESAP Length = 178 Score = 205 bits (521), Expect = 7e-52, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 129/177 (72%), Gaps = 4/177 (2%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+W+VV +SG+E +V +L + I+ +MED ++VP E+ +E++GG+R+ S+RK FP Sbjct: 3 KQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKIFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 GYV+V+M+++D S+ +VR+ P V GF+G G +P P++D E + I+++++ GD+PR Sbjct: 63 GYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQME--GDEPRI 120 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + PGE VRV GPF +F G V++V+YEK++++V +S+FGR TP+EL++ Q+EK Sbjct: 121 RIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177 >UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 Tax=Firmicutes RepID=Q1WST1_LACS1 Length = 186 Score = 201 bits (513), Expect = 6e-51, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRKSE 61 E+ +K+WYV+ ++G+E +V +L MED V+VP EE E + G+ + + Sbjct: 6 ESVEKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEK 65 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVG 119 K FPGYVLV+MVM D SW++VR+ P V GF+G G+ +PAP+ D+E++ I++ L Sbjct: 66 LKTFPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISS 125 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 E G+ V + DG F+ G + E+D EK +LKV + +FGR T EL++ QV+ Sbjct: 126 R--HSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVD 183 Query: 180 K 180 K Sbjct: 184 K 184 >UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJ02_BDEBA Length = 177 Score = 200 bits (508), Expect = 2e-50, Method: Composition-based stats. Identities = 87/175 (49%), Positives = 120/175 (68%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WY+V + E ++ E IK ME+ FGE+++P E VVE+ GQ++ RKFF Sbjct: 2 EKKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKFF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGY+ VQM +ND +WHLVR+ +V GF+GGT RP + + EV + ++ V +KPRPK Sbjct: 62 PGYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRPK 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE V V DGPF++F G VEE++ +K++LKV VSIFGR TPVELD+ QVEK Sbjct: 122 VKFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176 >UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=A3EVT3_9BACT Length = 184 Score = 199 bits (507), Expect = 3e-50, Method: Composition-based stats. Identities = 78/176 (44%), Positives = 114/176 (64%), Gaps = 1/176 (0%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 KK WYV+ ++GFE RV TS+ E + L ++ D+ G+V+VP + V E++ G+++ S RK Sbjct: 9 SKKNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKV 68 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVLV+M + + + + P+V GF+G P P+S +EV + +R++ P P Sbjct: 69 FPGYVLVEMEPTEEAIQFILATPKVTGFLGN-GTTPIPMSSREVSELFDRIESGTAMPSP 127 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F E VR+ DGPF F+G++ EVD + +LKV VSIFGR TPVELDF QVE+ Sbjct: 128 SQHFSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVER 183 >UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 Tax=Actinomycetales RepID=NUSG_MYCLE Length = 228 Score = 199 bits (506), Expect = 4e-50, Method: Composition-based stats. Identities = 76/190 (40%), Positives = 107/190 (56%), Gaps = 19/190 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +++G+E +V +L ++ ++ D +V VPTEEV EI+ GQRR RK PGY Sbjct: 39 WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG--------- 119 +LV+M + D SW VR+ P V GF+G TS RP+ ++ +V + Sbjct: 99 ILVRMDLTDDSWAAVRNTPGVTGFVGATS-RPSALALDDVVKFLLPSGSAKKDAKGAVST 157 Query: 120 ---------DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 ++ + +E GE V V DGPFA + EV+ E+ +LKV VSIFGR TP Sbjct: 158 AAAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETP 217 Query: 171 VELDFSQVEK 180 VEL FSQV K Sbjct: 218 VELTFSQVSK 227 >UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 Tax=Bacteria RepID=Q0AUG6_SYNWW Length = 203 Score = 199 bits (506), Expect = 4e-50, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 116/172 (67%), Gaps = 2/172 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVV +SG+E ++ L + ++ NM+D EV++P E+ VE + G+R+ + ++ FPGY Sbjct: 33 WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V+V M+M+D SW++VR P V GF+G + +P P+ +E+D I ++ + +K Sbjct: 93 VIVNMIMDDDSWYVVRHTPGVTGFVG-SGSKPIPLHQEEIDKIRRQMGLM-EKKTMIIDI 150 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 E GE +RV GPFA+F GVV E+ EK +++V++S+FGR TPVELD+ Q+EK Sbjct: 151 EIGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEK 202 >UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 Tax=Desulfotalea psychrophila RepID=Q6AP83_DESPS Length = 177 Score = 198 bits (505), Expect = 5e-50, Method: Composition-based stats. Identities = 90/173 (52%), Positives = 129/173 (74%), Gaps = 2/173 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++QA SGFE +V +L + IK +ED FG+++VPTE+VVE+ G R+ S +KFFP Sbjct: 3 KQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKFFP 62 Query: 67 GYVLVQMVMNDASWHLVR-SVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 GY+L+ M + D +WH V ++PRV+GF+G + P P+SD+E I+ R+Q+ ++PRPK Sbjct: 63 GYMLINMELTDETWHTVHENMPRVVGFVGDDRN-PMPLSDEEAAKIIGRIQEGSERPRPK 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +F+ GE VRV DGPF++F GVV+EV +K R++V VSIFGR TPVEL+F QV Sbjct: 122 VIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174 >UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 Tax=Propionibacterium acnes RepID=Q6A6K1_PROAC Length = 303 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 107/187 (57%), Gaps = 15/187 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ +SG E +V +L ++ NMED E +VPTEEVVEIR G RR R + PG Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM-------------NR 114 YVLV+M + D SW +VR P V GF+G S P P++ EV ++ ++ Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVG-QSTTPIPLTFDEVVKMLTPSVVARVSRENADK 235 Query: 115 LQQVGDKPRPKT-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 KP+ + +E GE V++ DGPFA + E++ R+K V I GR+TPV+L Sbjct: 236 TSSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDL 295 Query: 174 DFSQVEK 180 +F+Q+EK Sbjct: 296 EFNQIEK 302 >UniRef50_D1BP79 Transcription antitermination protein nusG n=5 Tax=Veillonellaceae RepID=D1BP79_VEIPT Length = 178 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 116/178 (65%), Gaps = 2/178 (1%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 K+WYV+ +SG+E +V T+L ++ ++D+ ++VP E+ ++ + G ++ +RK Sbjct: 2 EADKKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRK 61 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYVLV+M +ND SW++VR+ P V GF+G + +P P+SD EV+ I+ + Q + KP Sbjct: 62 IFPGYVLVEMEVNDRSWYVVRNTPGVTGFVGSAT-KPVPLSDSEVEHIL-KSQGLDKKPT 119 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 E GE VR+ G F D GV+ E++ EK LK+SV +F R T VEL+FSQVEKA Sbjct: 120 INVDVEVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEKA 177 >UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU17_RUBXD Length = 176 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 115/175 (65%), Gaps = 2/175 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYVV +SG E +V +L I+ ++ FGE+ +PTE+V+EI+ G++ + + FP Sbjct: 2 KKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKPRPK 125 GY+LV + MND +W ++R P V +G + D+P P+S EV+ +++ + + +K + Sbjct: 62 GYILVNVEMNDDTWRVIRQTPGVTQIVG-SGDKPTPLSRAEVERLLHPEEPEKREKVKAT 120 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ GE VRV GP +DF G + +++ ++S++KV VSIFGR TPVEL F+QV K Sbjct: 121 VDFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAK 175 >UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212 Tax=Bacilli RepID=NUSG_STAEQ Length = 182 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 72/183 (39%), Positives = 113/183 (61%), Gaps = 5/183 (2%) Query: 1 MSEA-PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 MSE KRWY V +SG+E +V +L + ++ NM + V++P EE +++ G+ +K Sbjct: 1 MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKK 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQ 117 +K FPGYVLV+++M D SW++VR+ P V GF+G G +P P+ +EV I+ ++ Sbjct: 61 LVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGL 120 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + GE VR+ GPFA+ G V+E++ +K +L V V +FGR TPVE++F Q Sbjct: 121 KEKTIDVELD--VGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQ 178 Query: 178 VEK 180 +EK Sbjct: 179 IEK 181 >UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6U2_THEAS Length = 181 Score = 196 bits (499), Expect = 3e-49, Method: Composition-based stats. Identities = 75/177 (42%), Positives = 111/177 (62%), Gaps = 2/177 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K+RWY+VQ +SG+E +V +L + I MED V+VP EE V ++ G+ ++ RK F Sbjct: 5 KRRWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVF 64 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRP 124 P YVLV+M+M+D SW++VR P V GF+G + + P P++D+EV +M ++ D KP+ Sbjct: 65 PSYVLVEMIMDDQSWYVVRHTPGVTGFVG-SGNHPIPLTDREVAEVMGKIGLPADRKPKV 123 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + E G+ VRV GPF G V EVD +K R++ SV++FGR T E +EK Sbjct: 124 ELDIEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKV 180 >UniRef50_P27309 Transcription antitermination protein nusG n=58 Tax=Bacteria RepID=NUSG_STRVG Length = 299 Score = 194 bits (494), Expect = 1e-48, Method: Composition-based stats. Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 17/189 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ ++G+E RV +L + N+E+ + VP EE+V+I+ G+R+ + PG Sbjct: 111 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 170 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG-------- 119 YVLV+M + + SW +VR+ P V GF+G D P P++ E+ ++ Q Sbjct: 171 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYD-PYPLTLDEIVKMLAPEAQEKAAKAAAEE 229 Query: 120 --------DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 + FE G+ V V DGPFA + E++ + ++K V IFGR TPV Sbjct: 230 AGLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPV 289 Query: 172 ELDFSQVEK 180 EL F Q++K Sbjct: 290 ELSFDQIQK 298 >UniRef50_P35872 Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 Length = 184 Score = 194 bits (493), Expect = 1e-48, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 9/182 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRKSERKFFP 66 WY V G E + +L + IK ++D +V++PTEEVVE+R GG++ +K FP Sbjct: 4 EWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFP 63 Query: 67 GYVLVQMVMNDA-----SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 GY+ +QM + D +W +VR P + GF+G RP P+S EV I+ +G K Sbjct: 64 GYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVG-AGMRPVPLSPDEVRHILEVSGLLGKK 122 Query: 122 PRPK--TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 PK F G+ VRV GPFADF G V E++ E+ ++KV V+IFGR TPVELDFSQV Sbjct: 123 EAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVV 182 Query: 180 KA 181 KA Sbjct: 183 KA 184 >UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 Tax=Elusimicrobia RepID=B2KEU4_ELUMP Length = 178 Score = 193 bits (491), Expect = 2e-48, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 117/180 (65%), Gaps = 4/180 (2%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSE K WY+V +G E +V + ++ N D +V+VPTE+VVE++ ++ + Sbjct: 1 MSEN--KAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQR 58 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 +RKFFP YVLV+M + ++ +R+V V GF+G + P P+ ++E+ AI++ Q Sbjct: 59 KRKFFPSYVLVEMDLTSEAYWFIRNVSGVTGFLGDPN--PVPLPEEEIAAILDLTQPGSG 116 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KP+ FE GE VR+ +GPF F GVV+EV+ +K++LK+ V++F R+TPVELDF QVEK Sbjct: 117 KPKHVIEFEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEK 176 >UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBR2_9BACT Length = 193 Score = 193 bits (491), Expect = 2e-48, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 114/181 (62%), Gaps = 9/181 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+V+ SG E +V + ++ + E +PTE+V E+R G++ + RK FPG Sbjct: 14 QWFVIHTLSGHENKVRDKILRQLQT-GDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPG 72 Query: 68 YVLVQMVM-------NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 Y+ V+M + N+ +W+ +RSV V+GF+GG ++P +++ EV+ IM Q Sbjct: 73 YIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGG-DNKPTALTESEVEDIMRPAQAGAP 131 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + +PK FE GE+VR+ DG F +F G ++E+D E+ +LK+ VSIFGR+TPVEL+F QVE+ Sbjct: 132 EVKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVER 191 Query: 181 A 181 Sbjct: 192 T 192 >UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9H7_PLALI Length = 204 Score = 192 bits (489), Expect = 4e-48, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 107/174 (61%), Gaps = 3/174 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV++ S E + +L I+ +E FGE+++PTE+VVE + G+++ E K +PGY Sbjct: 31 WYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLYPGY 90 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP--KT 126 ++VQM++ND +W++VR+ V F G +P P+ D E+ ++ + +Q + P K Sbjct: 91 LMVQMILNDDTWYIVRTTGGVGDFTGSAG-KPTPMQDHEIARMLQKQEQKQESAAPAMKI 149 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G++V++ +G F F G ++ +D ++ V V IFGR+TPVEL++ Q E+ Sbjct: 150 EFAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203 >UniRef50_B3E158 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B3E158_METI4 Length = 201 Score = 191 bits (487), Expect = 7e-48, Method: Composition-based stats. Identities = 78/187 (41%), Positives = 120/187 (64%), Gaps = 9/187 (4%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +++ +WY + SG E +V +L + IK M+DL GEV++P E V E+R G+R + Sbjct: 16 AKSQNMQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEIN 75 Query: 62 RKFFPGYVLVQMVMNDAS-------WHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 RK +PGYV +Q+ + D+S W+ VR V+GF D P P+ ++V+ ++ + Sbjct: 76 RKLYPGYVFLQIQLRDSSGKLIERAWYFVRETSGVIGF--ADGDNPLPMPREQVEGMLRQ 133 Query: 115 LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 +Q+ PKT+F G+ V+V DGPF + GV+EEVD E+ +L+VSV+IFGR+TPVEL+ Sbjct: 134 IQERTSSALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELE 193 Query: 175 FSQVEKA 181 + QVEKA Sbjct: 194 YWQVEKA 200 >UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 Tax=Bifidobacteriaceae RepID=B8DVU5_BIFA0 Length = 330 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 69/187 (36%), Positives = 107/187 (57%), Gaps = 13/187 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + +WYV+ +SG+E RV +++ ++ +ED +V VP EEV + ++ R Sbjct: 142 EGKWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRV 201 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM------NRLQQVG 119 PGYVL++M ++ + +VR V GF+G S PAP+S KEV ++M + L++ G Sbjct: 202 PGYVLIRMYPDENARRIVRETEGVTGFVG-PSREPAPLSRKEVVSMMAPMIASHALKEAG 260 Query: 120 DKPRP------KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 DKP + ++ G+ V V DGPF + VV +V+ +L V VSIFGR TPVEL Sbjct: 261 DKPAAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVEL 320 Query: 174 DFSQVEK 180 F QV++ Sbjct: 321 GFDQVQR 327 >UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 Tax=Sphingomonadales RepID=C8WBL1_ZYMMN Length = 179 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 85/177 (48%), Positives = 125/177 (70%), Gaps = 4/177 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY++ A+SGFE +V ++ + ++ L + VPTE+ VE+R G++ ERK FPG Sbjct: 3 RWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCFPG 62 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ---VGDKPRP 124 YVL ++ MN+ +HLV++ P+V GF+G + +P PISD E + I+N + G K + Sbjct: 63 YVLAKLNMNEDVYHLVKNTPKVTGFLGFSG-KPQPISDAEAEHILNHKAEAEVAGKKAQI 121 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 K FE G+ V+V +GPFA FNGVVE++D++++R+KVSVSIFGRATPVEL+F QVE+A Sbjct: 122 KVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVERA 178 >UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 Tax=Clostridiales RepID=A6LPP9_CLOB8 Length = 181 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 7/177 (3%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + + RWYVV +SG+E +V +L + I+ N+E L ++ VP EEVVE + G+++ S +K Sbjct: 10 SDRARWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKK 69 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYVLV+M+M D +W++VR+ V GF+G +P P+SD+EV+++ + Sbjct: 70 KFPGYVLVKMLMGDEAWYVVRNTRGVTGFVG-PGSKPVPLSDEEVESMGVL------EVP 122 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + E GE +R+ GP D ++E+ +K ++K V +FGR T ELDF+QVEK Sbjct: 123 VEIDLEVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEK 179 >UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=C4Z2Q9_EUBE2 Length = 178 Score = 190 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 109/175 (62%), Gaps = 2/175 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +WYVV +SG+E +V ++ + ++ N+ D EV+VP E VVEI+ G ++ +++K F Sbjct: 3 DAKWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMF 62 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRP 124 PGYVLV+MVMND SW++VR+ V GF+G +P P++ E+ + L++ + KP Sbjct: 63 PGYVLVKMVMNDDSWYVVRNTRGVTGFVG-PGSKPVPLTPTEIKNLGISLEEEQEVKPVI 121 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + + G+ V + G + D G + ++ K L ++V +FGR TPVE+DF+ V+ Sbjct: 122 QFAGKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176 >UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 Tax=Actinobacteria (class) RepID=B0RIR6_CLAMS Length = 345 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 17/189 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +++GFE RV +++ + NMED ++ VP E+VVEI+ GQR+ R PG Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK-- 125 YVLV+M +N+ SW +VR P V GF+G + P P+ +E +++ L ++ + + K Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHN-PTPLRFEEAFSMLKSLVEIKEVAQVKGQ 275 Query: 126 --------------TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 FE GE + + +G FA G + E+ E +L V VS+F R TPV Sbjct: 276 PTKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPV 335 Query: 172 ELDFSQVEK 180 EL F QV K Sbjct: 336 ELSFDQVTK 344 >UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 Tax=Leptospira RepID=B0SAG6_LEPBA Length = 184 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M ++ K+WYV+Q +SG E +V T++ + ++ +ED V +P+ EV E++ G+++ + Sbjct: 1 MGDSLDKKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVT 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ--QV 118 ++K PGYVLV+M M D ++++P V F+GG P P+S E+ + + + + Sbjct: 61 KKKLMPGYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVES 120 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + RP+ LF+ GE +++ DGPFA+F G+V+E+ +K RL+V V IFGR+TPVELD+ QV Sbjct: 121 EEVSRPRFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQV 180 Query: 179 E 179 + Sbjct: 181 K 181 >UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPF7_9ACTO Length = 274 Score = 190 bits (482), Expect = 3e-47, Method: Composition-based stats. Identities = 67/186 (36%), Positives = 97/186 (52%), Gaps = 14/186 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWYV+ +SG+E RV L + NMED ++ VP EEV EIR GQR+ R PG Sbjct: 88 RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL------------ 115 YVL++M + D SW +V+S V GF+G P +S+ EV +++ + Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFVGN-GRTPVALSENEVVSMLTPVIEAEAAAEAVAA 206 Query: 116 -QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 + P + + G+ V + P+A V EVD RL V +++ G+ TPVEL Sbjct: 207 GKAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELS 266 Query: 175 FSQVEK 180 F+QV K Sbjct: 267 FNQVRK 272 >UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 Tax=Synergistaceae RepID=C9M8Z2_9BACT Length = 185 Score = 188 bits (478), Expect = 7e-47, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 109/180 (60%), Gaps = 2/180 (1%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E +W+ VQ +SG+E +V +L + I N ED V+VP E+VV ++ G+ ++ R Sbjct: 7 EQANVQWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSR 66 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ-VGDK 121 K FP YVLV+M+M+D SW++VR P V GF+G P P+SD+EV ++ ++ + + Sbjct: 67 KLFPSYVLVEMIMDDQSWYVVRHTPGVTGFVG-AGAHPLPLSDEEVRDVLVKVGELEAET 125 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P+ + G+ VRV GPF GVV +V+ ++K +S+FGR T E++ +++E+ Sbjct: 126 PQIVVECQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185 >UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 Tax=Verrucomicrobiaceae RepID=B2UQY7_AKKM8 Length = 189 Score = 188 bits (478), Expect = 7e-47, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 103/185 (55%), Gaps = 8/185 (4%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 P ++WYV+ SG E V + K + D V VPTE + E+R G++ + K Sbjct: 6 EPHEQWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSK 65 Query: 64 FFPGYVLVQM-------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ 116 FPGYV M +N W+ ++ + V+ I G+ + P P+ +EV+ ++ L Sbjct: 66 LFPGYVYANMYLLEADGTLNKDLWYFIQQIDGVIS-IAGSRNAPLPMRKREVEDLLPLLD 124 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 RPK F G+ VRV +GPF G +EE+D EK +L+VSVSIFGRATPV+L++ Sbjct: 125 AEAVAARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYW 184 Query: 177 QVEKA 181 QVEKA Sbjct: 185 QVEKA 189 >UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 Tax=Rickettsia RepID=NUSG_RICBR Length = 190 Score = 187 bits (475), Expect = 1e-46, Method: Composition-based stats. Identities = 80/179 (44%), Positives = 114/179 (63%), Gaps = 3/179 (1%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 SE K+WYV+ SG E R+ + E I M D F +++VP V E++ + K E Sbjct: 13 SEKDTKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVE 72 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 +K P Y+L++M M D SWHLV+++P V GF+G + P +++ E+ I RL+ + Sbjct: 73 KKLMPSYILIKMNMTDKSWHLVKNIPGVTGFLGSKTT-PKALTESEIQNI--RLETEAKE 129 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + L+E GE+V V +GPF F G VEEVD EK+RLKVSVSIFG+ATP+EL F+QV+K Sbjct: 130 AKDAKLYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188 >UniRef50_A6CA55 Transcription antitermination protein nusG n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CA55_9PLAN Length = 194 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 111/181 (61%), Gaps = 3/181 (1%) Query: 3 EAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 E +KR WYV++ S E + +L IK +E+ FGE+++PTE+VVE +GG++R E Sbjct: 15 EGSEKRLWYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFE 74 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 RK +PGY+++Q+ +ND SW+LVRS V F G +P P+ + E+ ++ R + + Sbjct: 75 RKLYPGYLMIQVELNDDSWYLVRSTNGVGDFTGAAG-KPIPMQEHEIARMLGREESKEET 133 Query: 122 P-RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P + K F+ G++V+V D F F G ++ VD ++ V + IF R TP EL++ Q+EK Sbjct: 134 PVKIKLDFQVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEK 193 Query: 181 A 181 Sbjct: 194 V 194 >UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 Tax=Corynebacterineae RepID=A4QBE9_CORGB Length = 318 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 23/195 (11%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++Q +SG+E +V +L + +ED EV+VP E+V EIR G+R+ +RK PGY Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ----------- 117 VLV+M MND W +VR P V F+G + P+ ++V + +Q Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNA-TPVKHRDVAKFLMPQEQAVVTGEAAAAA 242 Query: 118 -----------VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 KP+ F GE V + G FA + + +D E +L+V VSIFG Sbjct: 243 DEGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFG 302 Query: 167 RATPVELDFSQVEKA 181 R TPV+L F QVEK Sbjct: 303 RETPVDLSFDQVEKV 317 >UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 Tax=Bacteria RepID=D0MHN6_RHOM4 Length = 186 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 127/185 (68%), Gaps = 6/185 (3%) Query: 1 MSEAPK----KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ 56 M+E K ++WYV++ FSG E +V L I+ ++D G++++PTE V E+RGG+ Sbjct: 1 MTEEKKQEGVRKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGK 60 Query: 57 RRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ 116 +R ER FFPGY+L++ V++ HL+ ++P V+GF+G + D+P P+ EV I+ ++ Sbjct: 61 KRTRERTFFPGYILIEAVLDRELQHLIANMPSVVGFLG-SGDQPTPLRPDEVRRILGKVD 119 Query: 117 QVGDK-PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 + + +P+ F+PG++VR+ +GPF +F GVVEEV +K +LKV VSIFGR TP+E+D+ Sbjct: 120 EAREMGEQPEIPFKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDY 179 Query: 176 SQVEK 180 QVE+ Sbjct: 180 LQVER 184 >UniRef50_A0Q872 Transcription antitermination protein nusG n=11 Tax=Francisella RepID=A0Q872_FRATN Length = 177 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 94/174 (54%), Positives = 133/174 (76%), Gaps = 3/174 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ SG+E RV L E+I++ +++ FG ++VPTE VVE++GGQ+RKSERK+FPGY Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ--QVGDKPRPKT 126 VL++ ++ +W+LV+SVPRV+ +G +P P+S EVD I+ ++ + +PR + Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKG-KPIPLSKAEVDRILGFVEGSKSTVEPRLRK 121 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + GE+VRV +GPF DF GV+EEV+YEKSRL+V+VSIFGR+TPVEL+FSQVEK Sbjct: 122 SYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 Tax=Spiroplasma citri RepID=Q14PQ9_SPICI Length = 217 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 11/184 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG E RV L + ++ NM+D+ ++ V E V +GG+ + E+ +PG Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRL---------Q 116 Y+ + M+MND +W++VR+ V GFIG G +P P++D+E ++++ Q Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 K FE + VR+ G F + G V ++D K V++ +FGR TP E++F Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211 Query: 177 QVEK 180 Q EK Sbjct: 212 QCEK 215 >UniRef50_B3T6R2 Putative transcription termination factor nusG n=2 Tax=prokaryotic environmental samples RepID=B3T6R2_9ZZZZ Length = 272 Score = 186 bits (473), Expect = 3e-46, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 122/177 (68%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + P +WY++QA+SG+EGRV ++RE +++ +E L E+ +P+E+++ + G++RK + Sbjct: 92 QNPNVKWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQ 151 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K+FPGYVL+ M + WHL+ +V RV GFIGGT +P P+ +KE++ I +++ + + Sbjct: 152 KYFPGYVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQK 211 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + + G+ V + +G F +F+G ++EV+ E+ +LKV VSIFGR TPVE++F V+ Sbjct: 212 ATEDEYSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVK 268 >UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=A4XLK3_CALS8 Length = 175 Score = 186 bits (472), Expect = 3e-46, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 118/180 (65%), Gaps = 6/180 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS+ + +WYVV + G+E +V +L + I+ N+ D ++ +PTE V EI+ G++ Sbjct: 1 MSDK-RAKWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVK 59 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E+K FP YVL++ VM++ W+ +R+V V GF+G S +P P++D+E++A+ + ++V + Sbjct: 60 EKKKFPSYVLIKAVMDNDIWYTIRNVRGVTGFVGPES-KPTPLTDEEIEAMGIKEEEVVE 118 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 E G+ V++ GPFADF G V +++ E+ ++KV +++FGR TPVE D+ QVEK Sbjct: 119 ----VFDIEVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174 >UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RNN9_ACIFE Length = 191 Score = 186 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 68/188 (36%), Positives = 110/188 (58%), Gaps = 13/188 (6%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 +K WYV+ +SG+E +V +L I ME+ +V+VP + V+ + +++ RK Sbjct: 2 ENQKHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARK 61 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK-- 121 FPGYVL++M+++D +W+ VR+ P V GF+G T +P P+SD+EV+ I+ + GDK Sbjct: 62 VFPGYVLIEMIVDDRTWYAVRNTPGVTGFVG-TGTKPIPLSDREVERILGAQPKEGDKAE 120 Query: 122 --------PRPKTLFEPG--EMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 P + G + VR+ F D G V E++ E+ ++KV V +FGR TP+ Sbjct: 121 AAGKAVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPI 180 Query: 172 ELDFSQVE 179 E+ F+QVE Sbjct: 181 EVKFTQVE 188 >UniRef50_C4LL90 Transcription antitermination protein nusG n=5 Tax=Corynebacterium RepID=C4LL90_CORK4 Length = 353 Score = 186 bits (472), Expect = 4e-46, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 29/208 (13%) Query: 1 MSEAPK--KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR 58 M E K WY+VQ +SG+E +V T L + +++ EV+VP EE VE++ G+R+ Sbjct: 145 MRELKKLPGEWYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRK 204 Query: 59 KSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM------ 112 + K PGYVL+++ ++DASW ++R P + F+G P P+ +EV + Sbjct: 205 VVKHKLLPGYVLMRIELDDASWSVIRDTPGITSFVGNEG-HPTPVKIREVAKFLLPPETA 263 Query: 113 -NRLQQVGDKP-------------------RPKTLFEPGEMVRVNDGPFADFNGVVEEVD 152 + +Q G++P + K +E GE V V GPFA + + E+D Sbjct: 264 TQKAEQEGEEPAAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEID 323 Query: 153 YEKSRLKVSVSIFGRATPVELDFSQVEK 180 E S+LK VSIFGR TPVELDF QVEK Sbjct: 324 AENSKLKALVSIFGRETPVELDFDQVEK 351 >UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 Tax=Chlorobiaceae RepID=B3QYK9_CHLT3 Length = 203 Score = 185 bits (470), Expect = 5e-46, Method: Composition-based stats. Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY V+ +SG E +V L + I + D +V +P E VE++ G+++ + FPG Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YVL++ V++ + +LV P V+GF+G D P P+ EV ++ Q++ K K Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLG-VGDEPTPLRPDEVKRLLEPEQEIERKMVTKAP 147 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 FE G V++ DGPF GV++EV+ EK ++KV ++ FGR+TP E+DFSQV+ Sbjct: 148 FEVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVK 199 >UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLA2_9ACTN Length = 184 Score = 185 bits (469), Expect = 7e-46, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 8/179 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR----KSER 62 KRWYV+ +SG+E +V L ++ + ++D +V P E V E++ + E Sbjct: 3 KRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTKEV 62 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK- 121 KF+PGYVLV+M ++D +W +VR+ P V GF+G +P+P+ +E + +M R D Sbjct: 63 KFYPGYVLVRMELDDNTWSVVRNTPGVTGFLG-VDGKPSPLRREEFNKMMRRSGGKADAT 121 Query: 122 --PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R T E G+ V V GP ADF+G+V EV+ E ++KV ++IFGR TPVEL Q+ Sbjct: 122 TLKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180 >UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 Tax=SAR11 cluster RepID=Q1UZH8_PELUB Length = 176 Score = 185 bits (469), Expect = 8e-46, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 126/175 (72%), Gaps = 1/175 (0%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K WY+VQ+ S FE +VA ++E + + D E++VPT +V E++ G+R + ++K+FP Sbjct: 2 KNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVL++ M++ +HL++++ RV GF+G P P+SDKE++ I+ +++ +P+ Sbjct: 62 GYVLIKSEMDNDLYHLIKNLKRVSGFLGSKG-IPVPVSDKEIEKILGQIKDGVAQPKSGI 120 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE V+V DGPFA F+G+VE++D EKSRLKVSVSIFGR TPV+L+++QVEKA Sbjct: 121 EYSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKA 175 >UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B1ZPC3_OPITP Length = 192 Score = 184 bits (468), Expect = 9e-46, Method: Composition-based stats. Identities = 71/183 (38%), Positives = 109/183 (59%), Gaps = 9/183 (4%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 +W+ + SG E +V + + K ++D EV++PTE V E++GG++ RK Sbjct: 9 ADAQWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKL 68 Query: 65 FPGYVLVQMVM-------NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 +PGYV +QM + + W+ V+ V V+GF+GG DRPA + E+D I R++ Sbjct: 69 YPGYVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVGG--DRPAALRQSEIDEIRARIEA 126 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 K PK + GE V++ DG FA G ++E+D E+ +LKVSVSIFGR TPVEL++ Q Sbjct: 127 ANGKEVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQ 186 Query: 178 VEK 180 V++ Sbjct: 187 VQR 189 >UniRef50_D2MPP9 Transcription termination/antitermination factor NusG n=2 Tax=Erysipelotrichaceae RepID=D2MPP9_9FIRM Length = 196 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 101/182 (55%), Gaps = 5/182 (2%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 + + RWYVV ++G E RV +L + ++ +++ + V EE + I+ + + + Sbjct: 13 DDENEVRWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVK 72 Query: 62 R-KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQV 118 + FPGY+ VQM M D +W++VR+ P V GFIG G +P P+S+ E+++I+ R+ Sbjct: 73 KVNMFPGYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHG 132 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 K F+ G+ V++ GPFA+ G + ++ + V +FGR TP E+ + + Sbjct: 133 DQK--VVVDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDL 190 Query: 179 EK 180 +K Sbjct: 191 QK 192 >UniRef50_P52852 Transcription antitermination protein nusG n=51 Tax=Bacteria RepID=NUSG_STRGB Length = 309 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 14/185 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ ++G+E RV T+L N+ED + VP EEVV+I+ G R+ ++ PG Sbjct: 126 EWYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPG 185 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-----KP 122 YVLV+M + + SW +VR+ P V GF+G D P P++ E+ ++ + KP Sbjct: 186 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYD-PYPLTLDEIVKMLAPEAEEKAARAEGKP 244 Query: 123 RPK-------TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 P+ FE G V V DGPFA + E+ + ++K V IFG TPVEL F Sbjct: 245 APQRKVEVQVLDFEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSF 303 Query: 176 SQVEK 180 Q++K Sbjct: 304 DQIQK 308 >UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5P4_9PLAN Length = 267 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRKSERKF 64 K WY+++ E + SL I ++ +E F +V+VPTE+V E + G+RR ++K Sbjct: 89 KFEWYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKI 148 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR---LQQVGDK 121 +PGY+LV MV ND +W +VR + F G +P P+ K+V+ I+ L++ ++ Sbjct: 149 YPGYILVNMVFNDETWFIVRETSGIGDFTGAMG-KPTPMDPKDVERILRSSKMLEEDTNQ 207 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 R F+ G+ VRV +G F +F G ++ +D R+ V ++IFGR+TPVEL+ Q+E Sbjct: 208 VRTAIPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267 >UniRef50_C2KN14 Transcription antitermination protein nusG n=3 Tax=Mobiluncus RepID=C2KN14_9ACTO Length = 280 Score = 183 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 100/190 (52%), Gaps = 18/190 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLH-NMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 RWYVV +S +E RV ++ + + + ME+ +V +P EE +E++ RRK R P Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ---------- 116 GYVLV+M M + SW LV+ P V GF+G D P P++ +EV ++ Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQD-PVPLTLQEVIDMLAPTAAQAAKATVTE 208 Query: 117 ------QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + T FE G+ V + GPF + E+ + S+LKV V+IF R TP Sbjct: 209 DGQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETP 268 Query: 171 VELDFSQVEK 180 VEL+F QVEK Sbjct: 269 VELNFDQVEK 278 >UniRef50_C8NX40 Transcription antitermination protein nusG n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NX40_9CORY Length = 342 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 25/196 (12%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFPG 67 WY++Q++SG+E +V T+L I+ +E+ +V+VP E+V E + G+++ +RK PG Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR------------- 114 YVLV+M +NDA+W +VR P V F+G + P+ ++V + Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNA-TPVKHRDVAKFLMPKAAPVDGEATASE 264 Query: 115 ----------LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 + + +KP F+ GE V + G A + + E+D E +++ VSI Sbjct: 265 ANTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSI 324 Query: 165 FGRATPVELDFSQVEK 180 FGR TPVEL Q+E+ Sbjct: 325 FGRETPVELTADQIER 340 >UniRef50_A7BC06 Transcription antitermination protein nusG n=2 Tax=Actinomyces RepID=A7BC06_9ACTO Length = 256 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 72/182 (39%), Positives = 101/182 (55%), Gaps = 11/182 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +SG E +V +L + I NMED V VP E V+E RG +++ PGY Sbjct: 73 WYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHVRIPGY 132 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR------LQQVGDKP 122 +V M N+AS+ +V+ P V GF+G + P P+S EV ++ + D+P Sbjct: 133 AIVCMDFNEASYRVVKETPAVTGFVGDQHN-PVPLSIDEVVMLLTPNVLEEAAEAAKDQP 191 Query: 123 RP----KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 P +T FE GE+V V DGPF + + E+ E +LKV V+IF R TP+EL F QV Sbjct: 192 APVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELGFDQV 251 Query: 179 EK 180 EK Sbjct: 252 EK 253 >UniRef50_B0S060 Transcription antitermination protein nusG n=5 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S060_FINM2 Length = 193 Score = 180 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 4/177 (2%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A + +WYVV +SG EG+V ++ + ++ D EV+VPTEE V GG ++ ERK Sbjct: 20 AKEGKWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERK 79 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV V+M + D SW+LVR+ V GF+G S +P +S+KE+ + Q K Sbjct: 80 IFPGYVFVKMTITDVSWYLVRNTRGVTGFVGPES-KPVAVSEKEIQKFALKNQSYSKK-- 136 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V + G F+D G++EE++ EK+ KV +S+FGR T VE+ F +EK Sbjct: 137 -EIDVNVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEK 192 >UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 Tax=Clostridiales RepID=B6G0A9_9CLOT Length = 180 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 107/181 (59%), Gaps = 3/181 (1%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRK 59 MSE + +WYVV +SG E +V ++ + ME++ V+VPTE VVE G + Sbjct: 1 MSELQEAKWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKI 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 +RK +P YVL++M++ D SW++VR+ V GF+G +P P+S++EV A+ L Sbjct: 61 RQRKVYPSYVLIKMIITDESWYVVRNTKGVTGFVG-PGSKPVPLSEEEVIAMGIEL-PAQ 118 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + FEPG++V++ +G FA G VEEV+ EK +K+ IFGR +PV + +E Sbjct: 119 EVVGGDVDFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIE 178 Query: 180 K 180 K Sbjct: 179 K 179 >UniRef50_P68893 Transcription antitermination protein nusG n=32 Tax=Streptococcus RepID=NUSG_STRP1 Length = 179 Score = 178 bits (452), Expect = 7e-44, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M ++ K W+V+Q +SG+E +V +L + + +NM D V +PT+ V + GQ ++ Sbjct: 1 MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEI 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD--RPAPISDKEVDAIMNRLQQV 118 E FPGYVLV+MVM D +W +VR+ P V GF+G + +P P+ ++E+ AI+ + Q Sbjct: 61 EENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQT 120 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 D T + G++V++ DG F G V E+ E +++K+ +++FG T E++ Q+ Sbjct: 121 IDVFD--TNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 176 >UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 Tax=Lactobacillales RepID=NUSG_LACLA Length = 185 Score = 178 bits (452), Expect = 8e-44, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+V+Q ++G+E +V L E +L+NM D V +PTE + G+ ++ E FPGY Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSD--RPAPISDKEVDAIMNRLQQVGDKPRPKT 126 VLV+M M D +W +VR+ P V GF+G + +P P+ ++E+ I+ + +V + Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ VR+ DG F+ F + E++ +K L ++V +FGRATPVELD Q+E Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIE 181 >UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 Tax=Brachyspira RepID=C0QWX1_BRAHW Length = 195 Score = 178 bits (451), Expect = 9e-44, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 107/190 (56%), Gaps = 10/190 (5%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +S+ +WY+V G+E +V + + K + M DL ++ +P+E V + G++ Sbjct: 5 ISDIKDYKWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSK 64 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR-------PAPISDKEVDAIMN 113 E F+PGYVLV+MVMNDA+ +VR P V GFIG + P P+S+ +V I Sbjct: 65 EEFFYPGYVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFE 124 Query: 114 RLQQVGDK---PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + F+ GE V+V DGPF NG++E ++ +K R+ V + IFGR+TP Sbjct: 125 NREDKSKTGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTP 184 Query: 171 VELDFSQVEK 180 EL+FS+V+K Sbjct: 185 TELEFSKVKK 194 >UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLI3_9PLAN Length = 294 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 102/174 (58%), Gaps = 4/174 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+++ S E + +L +K+ +E F EVMVPTE++VE + G+++ ++RK +PGY Sbjct: 120 WYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYPGY 179 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL- 127 ++V M +ND +W LVR + F G RP P+ EV+ I +++ P Sbjct: 180 IVVHMAINDDTWFLVRETGGIGDFTGAAG-RPTPMLAHEVERITKKVEDEETGEEPVKTN 238 Query: 128 --FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F+ G+ VR+ +G F +F G VE +D R+ V ++IFGR TPVE++ Q+E Sbjct: 239 IRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQME 292 >UniRef50_P36265 Transcription antitermination protein nusG n=48 Tax=cellular organisms RepID=NUSG_SYNY3 Length = 205 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 108/187 (57%), Gaps = 13/187 (6%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG-GQRRKSERK 63 + W+ VQ SG E RV +L + I ++ D +V +P +V+IR G R + E K Sbjct: 19 SEGHWFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEK 78 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----------PAPISDKEVDAIMN 113 FPGYVL++M+M+D +W +V++ P V+ F+G R P P+S EV+ I Sbjct: 79 IFPGYVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFR 138 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 + + +P K E G+ + V GPF DF G V EV E+S+LK +SIFGR TPVEL Sbjct: 139 HVDE--QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVEL 196 Query: 174 DFSQVEK 180 +F+QVEK Sbjct: 197 EFTQVEK 203 >UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 Tax=Tropheryma whipplei str. Twist RepID=Q83MQ7_TROWT Length = 217 Score = 175 bits (445), Expect = 5e-43, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 97/181 (53%), Gaps = 9/181 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYVV + +GFE R +L + N + +V VP E+VV IR GQR+ R PG Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR---- 123 YVLV+M +N++SW +VR+ P + GF+G +P P+S +EV ++ V Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNM-HQPVPLSFEEVFDMLKTTVSVSQTAARQKR 154 Query: 124 ----PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 E GE V + G FA G + E+ E RL V +S+F R TPVEL F QVE Sbjct: 155 SVTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVE 214 Query: 180 K 180 K Sbjct: 215 K 215 >UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 Tax=Epsilonproteobacteria RepID=NUSG_HELPJ Length = 176 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 113/173 (65%), Gaps = 3/173 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFPG 67 WY +Q +SG E V ++ H++ D E++VPTE+++E+ + + + ER +PG Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV +++ ++ WH ++S+PRV FIG + +P P+S+ ++ I+ ++ P+PK Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIG-ENKKPTPLSEADIGHILEKMNNRA-APKPKIF 121 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE GE+VRV +GPFA+F VEE D E +LK++VSIFGR TP+E+ +SQVEK Sbjct: 122 FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEK 174 >UniRef50_B3EL56 Transcription antitermination protein nusG n=8 Tax=Chlorobiaceae RepID=B3EL56_CHLPB Length = 193 Score = 173 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + RWY ++ +SG E +V + ++ +ED +V VP E+ VE+R G++R + Sbjct: 16 SRPRWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNA 75 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVL++ +++ + +L+ +P VMGF+G +D P P+ EV+ I+ V + Sbjct: 76 FPGYVLIEAILDKQTKNLIMDIPSVMGFLG-VNDIPTPLRPDEVEKILEPESTVEQRSVV 134 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + F G+ V+V DGPF+ GVV +V E+ ++KV +S FGR+TP ELDFSQV+ Sbjct: 135 EAPFRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVK 189 >UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQP9_9FIRM Length = 206 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 105/172 (61%), Gaps = 4/172 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 RWYV+ +SG+E +V +L + M+D ++++P + E++ G+++ R Sbjct: 30 SEKDIRWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSR 89 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K FPGY+L+QM +ND SW++VR+ P V GF+G T+ +P P+SD+E I ++ K Sbjct: 90 KVFPGYLLIQMEVNDRSWYVVRNTPGVTGFVG-TTTKPIPLSDEEAKRI---IEGKDKKQ 145 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 KT + G+ +++ GPFAD + VV +V ++S++K +S FG T +EL+ Sbjct: 146 TAKTDAKVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELE 197 >UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B8E0K4_DICTD Length = 176 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 109/177 (61%), Gaps = 3/177 (1%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + +W+VV +G E +V L +KL+++ED E++VP E+V+ ++GG++R +K Sbjct: 2 AEPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKV 61 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGY+ ++M+ ++ ++R+ V GF+G T RP+ ++ +E I L+Q + RP Sbjct: 62 FPGYLFIRMIEDEDVIRMIRNTTGVTGFVG-TPGRPSTLNPQEEHWIRRFLEQ--KEIRP 118 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + + G+ V + GPF + G V+EV EK ++V +SIFGR TP E+D +QVEK Sbjct: 119 ELKVKKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEKT 175 >UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYQ7_9FIRM Length = 198 Score = 173 bits (438), Expect = 3e-42, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 7/174 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 RWYVV +SG E +V ++ + ++ M DL ++ +PTEE VEI+ GQR+ + K F Sbjct: 31 ARWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFI 90 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+L++M + + SW++VR+ V GF+G +P P++ +EV + +K Sbjct: 91 GYILIKMKVTNESWYVVRNTQGVTGFVG-QGKKPVPLTAEEVRRLGI------EKVIVNL 143 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PG+ ++V +GPF NG V EVD E L+ + +FGR TPV+L++ Q++K Sbjct: 144 KIKPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDK 197 >UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6N2_GEMAT Length = 181 Score = 172 bits (437), Expect = 4e-42, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 108/178 (60%), Gaps = 5/178 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIK---LHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + RWY +Q SG E +V ++ I + L + +VPT++VVEI+ G++ ER Sbjct: 3 EHRWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVER 62 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K FPGYVLV+MV + + H + ++ V+ F+G D P P+ D EV ++ + + P Sbjct: 63 KIFPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKD-PMPLRDDEVRRLLGQADPADETP 121 Query: 123 -RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 R + F G+ V + +GPFADFNG VEE+ +K +++VSVS+FGR T VELD+ Q+ Sbjct: 122 VREEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179 >UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 Tax=Anaerococcus RepID=C7RDB1_ANAPD Length = 207 Score = 170 bits (432), Expect = 2e-41, Method: Composition-based stats. Identities = 63/174 (36%), Positives = 94/174 (54%), Gaps = 6/174 (3%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 RWYVV ++G+E RV ++ I D EV VPTEE VE++ ++ RK F Sbjct: 38 NARWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRKLF 96 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYV+V+M + + SW+++R+ V GF+G +P ++ EV + + P Sbjct: 97 PGYVMVKMNITNKSWYIIRNTQGVTGFVGPDG-KPVALTPAEVRKFGVK----DEAPILN 151 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ V + GPF F VEEVD EK +K V +FGR T ++LDF+ +E Sbjct: 152 INVNVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIE 205 >UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCJ0_9DELT Length = 176 Score = 170 bits (430), Expect = 3e-41, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 114/172 (66%), Gaps = 5/172 (2%) Query: 12 VQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLV 71 + FSG+E V SL + IK + +E+ F +++VP+E+V+E RG ++ K RKFFPGY+ V Sbjct: 1 MNTFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFV 60 Query: 72 QMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ----VGDKPRPKTL 127 +M + +WHLV++ P+V GF+ + P P+S +E+D ++ + + + P Sbjct: 61 RMRLTKPAWHLVKNTPKVSGFL-SSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDID 119 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ VRV G FA+F+G VEEV+ EK ++K+SVSIFGR T VE+DFS+VE Sbjct: 120 YSVGDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171 >UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 Tax=Acholeplasmataceae RepID=B1VAN1_PHYAS Length = 204 Score = 169 bits (429), Expect = 3e-41, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 6/179 (3%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG-GQRRKS 60 +EAP+ RWY+ Q + G+E V L ++ + +L V+ P E E R G++ Sbjct: 24 TEAPQFRWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSK 83 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQV 118 ER +PGYV ++M++ D SW +V++ PR+ GF+G G S +P P+S+KE++ ++ ++ Sbjct: 84 ERNLYPGYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKM--- 140 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 G +P G+ V + G A+ V +D ++ ++ V V +FGR PVE+ FS Sbjct: 141 GIMSKPNYDHLIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSD 199 >UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q133_9BACT Length = 182 Score = 168 bits (427), Expect = 6e-41, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 116/179 (64%), Gaps = 7/179 (3%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+V++ S E +V +L E I+ ME L V+VP+E++ E++GG++R S+RK +P Sbjct: 3 KEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKIYP 62 Query: 67 GYVLVQMVMND------ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 GY++V++ +++ W +R FIGG S +P P++ EV+ +++ L Q + Sbjct: 63 GYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQS-KPVPMTKYEVEKLLSDLDQKEE 121 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +PR K F GE VR+ +GPF +++G+VEEV R+KV +++FGRATPVEL++ QVE Sbjct: 122 RPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180 >UniRef50_A5TS63 Transcription antitermination protein nusG n=10 Tax=Fusobacterium RepID=A5TS63_FUSNP Length = 193 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 101/194 (52%), Gaps = 14/194 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS ++W+++ +SG+E +V T L + ++ ++ ++VP EE+ EI G+ +K Sbjct: 1 MSVENVRKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKI 60 Query: 61 ERKFFPGYVLVQMVMNDA-------------SWHLVRSVPRVMGFIGGTSDRPAPISDKE 107 RK FP YV+++M W+ VR+ V GF+G SD P P+ ++E Sbjct: 61 YRKLFPAYVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSD-PIPMEEEE 119 Query: 108 VDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 V I N + K K F G+ V++ G F D G V E+D E R+KV V IFGR Sbjct: 120 VKNIFNIIGVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGR 179 Query: 168 ATPVELDFSQVEKA 181 TPVE++ V K Sbjct: 180 MTPVEIEVDGVLKV 193 >UniRef50_B0A697 Transcription antitermination protein nusG n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A697_9CLOT Length = 179 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 113/181 (62%), Gaps = 6/181 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRK 59 MSE + +WYVV +SG E +V ++ +K MED +V+VPTE+V+E + G+ + Sbjct: 1 MSEIQEAKWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKV 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 +RK +P YVL+QM++ D SW++VR+ V GF+G +P P+S++EV ++ L ++G Sbjct: 61 RQRKIYPSYVLIQMIITDESWYIVRNTKGVTGFVG-PGSKPVPLSEEEVKSMGIDLDKIG 119 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF-GRATPVELDFSQV 178 +K +T E GE+V V DG F +GVV+E+D + ++K+SV+ +ELD + Sbjct: 120 EK---RTEIEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSI 176 Query: 179 E 179 E Sbjct: 177 E 177 >UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 Tax=Synechococcus RepID=Q2JTQ7_SYNJA Length = 223 Score = 166 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 13/184 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFP 66 RWY VQ SG E +V ++L + ++ D EV++P ++ R G+R++ E K FP Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----------PAPISDKEVDAIMNRLQ 116 GYVLV+M +ND +W +V++ P V+ F+G R P P+S EV I + ++ Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 ++ K PG+ + V GPF F G V +V E+ +LK +SIFGR TPVEL+F Sbjct: 160 --VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217 Query: 177 QVEK 180 QV K Sbjct: 218 QVRK 221 >UniRef50_O83264 Transcription antitermination protein nusG n=4 Tax=Treponema RepID=NUSG_TREPA Length = 185 Score = 165 bits (418), Expect = 6e-40, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 113/181 (62%), Gaps = 8/181 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNME-DLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K WY++ FSG E RV ++R ++ + ++ ++ +P E + E++ G++R RKFF Sbjct: 3 KEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRKFF 62 Query: 66 PGYVLVQMVMNDASWHLV----RSVPRVMGFIGGTSD-RPAPISDKEVDAIMNRLQQV-- 118 PGY+LV+M + + W +V R +P V GF+G + + +P +S E I+ + ++ Sbjct: 63 PGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEIKG 122 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 PR F G+ VR+ +GPFA F+G VEEV E+++++V+V+IFGRATPVEL+ QV Sbjct: 123 DRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELVQV 182 Query: 179 E 179 E Sbjct: 183 E 183 >UniRef50_C7NC81 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=C7NC81_LEPBD Length = 207 Score = 165 bits (417), Expect = 9e-40, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 110/191 (57%), Gaps = 17/191 (8%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WY++ +SG+E +VA L + I+ ++ D ++VP EEV+E + G++ K RK F Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 66 PGYVLVQM-------------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM 112 P YV+++M ++ +W+++R+ V GF+G SD P P+SD+E ++ Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSD-PIPLSDEEASNLL 133 Query: 113 NRLQ---QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 ++ + PR F+ GE+V V G F G + E+DYE ++KV + + GR T Sbjct: 134 AKIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLT 193 Query: 170 PVELDFSQVEK 180 PVE++ +++ K Sbjct: 194 PVEVEHTEIAK 204 >UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S1Q0_SALRD Length = 185 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 110/173 (63%), Gaps = 2/173 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV++ FS E +V L I+ +ED E+++PTE V E++GG+++ E+ FFPGY Sbjct: 10 WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFI-GGTSDRPAPISDKEVDAIMNRLQQVGDK-PRPKT 126 +L+ + L +P V+GF+ GT D P + ++E+ I+ ++ + + +P+ Sbjct: 70 ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQPEM 129 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F+ G+ V+V DGPF FNG+VE+V ++ ++KV VSIFGR TPVELD+ QVE Sbjct: 130 PFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182 >UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQP0_FIBSS Length = 179 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY V F+G E + L + I+ ++D FG ++VPT EVV G+RR S + FP Sbjct: 4 QWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNLFPA 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 Y++++M +++ + HLV ++ V F G S P P+ EVD ++ + + + Sbjct: 64 YIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEGEIQ 123 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE V + +GPF F GVV+E+ K +KV VS+FGR+TPVEL F+QVE A Sbjct: 124 IPYTIGENVCIKEGPFKGFVGVVDEIMEAK--IKVMVSVFGRSTPVELAFNQVESA 177 >UniRef50_C0W699 Transcription antitermination protein nusG n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W699_9ACTO Length = 263 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 30/208 (14%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRK 59 MS P WYV+ +SG+E RVA + + +ED + +VP E V+E++ G++++ Sbjct: 57 MSSLPG-EWYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKE 115 Query: 60 SERKFFPGYVLVQMVMND-----ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN- 113 R PGYV V+M ++D W ++ P V GF+G + P P++ E + + Sbjct: 116 VSRVRIPGYVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYN-PVPLTFDEAVSQLGP 174 Query: 114 ---------------------RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVD 152 R Q V + FE GE V V DGPF + E+ Sbjct: 175 TPEEVAAKQAAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISEIH 234 Query: 153 YEKSRLKVSVSIFGRATPVELDFSQVEK 180 E +L+V +S+FGR TP EL F+QV K Sbjct: 235 PETQKLQVLISLFGRDTPAELSFTQVAK 262 >UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 Tax=Selenomonas RepID=C4V5M2_9FIRM Length = 183 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 7/176 (3%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 P + WYV+ +SG+E +V +L + +M ++ +V+VP E +E++ G+ + RK Sbjct: 13 NPHRAWYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRK 72 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYVLV M++++ SW++VR+ V GF+G P P++ +E + I++ VG +P+ Sbjct: 73 VFPGYVLVDMIVDEHSWYVVRNTTGVTGFVGSE-KHPIPLTAEEAERILS--GSVGAEPK 129 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +T G+ VR+ G F D+ G + +D +KV V G++ VE+D QVE Sbjct: 130 RRTKVNVGDTVRITSGAFEDYAGKITSIDMSSMGVKVDVD--GKSLDVEID--QVE 181 >UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 Tax=Bacteroidetes RepID=C7PUF8_CHIPD Length = 196 Score = 161 bits (409), Expect = 8e-39, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 110/180 (61%), Gaps = 6/180 (3%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 +WYV++ SG E +V L ++ + ++ ++ +P E+V +++ G++ E+ F Sbjct: 17 QDTKWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNF 76 Query: 65 FPGYVLVQMV---MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 +PGYV+++ + M D +R+V V+ F+G D+P + EV+ ++ ++ ++ D Sbjct: 77 YPGYVMIEAIDGKMTDEVIQSIRNVSGVIHFLG--KDKPIALRKAEVNKMLGKVDEMSDN 134 Query: 122 -PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE +++ DGPF DFNG++EEV +K +LKV+V IFGRATPVEL+F QVEK Sbjct: 135 GLTMSEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEK 194 >UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETZ5_AMOA5 Length = 186 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 62/181 (34%), Positives = 111/181 (61%), Gaps = 6/181 (3%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +WYV++ SG E V L ++ ++D ++++P+E++ E+R G+R+ ER FF Sbjct: 4 DPKWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFF 63 Query: 66 PGYVLVQMVMND-ASWHLVRSVPRVMGFIG----GTSDRPAPISDKEVDAIMNRLQQVGD 120 PGY+++ ++D H ++ +P +GF+G +S +P P+ +KE++ I+ R+ ++ + Sbjct: 64 PGYLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAE 123 Query: 121 KP-RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + F GE V++ DGPF+ F G ++EV E+ +L V V IF R TP+EL ++QVE Sbjct: 124 DDNGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVE 183 Query: 180 K 180 K Sbjct: 184 K 184 >UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 Tax=Wolbachia RepID=Q5GRY4_WOLTR Length = 278 Score = 160 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 5/182 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRKSE 61 E K +WY+++ S +E +V + E+ + D F EV +P EE+ E+ ++ Sbjct: 95 EFNKYKWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMR 154 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPR---VMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 RK FPGYV + + + D + V ++P+ V GF+ P ISD E+ ++ N L Sbjct: 155 RKCFPGYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKN-GSVPKVISDDEIYSMCNALYNA 213 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + +E GE V++NDG F +F G V+ ++ EK + + VSI G+ T +ELD +QV Sbjct: 214 QETKKLSHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQV 273 Query: 179 EK 180 EK Sbjct: 274 EK 275 Score = 42.1 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 17/104 (16%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + +WY+++ G E + + + F EV +P + V + + E Sbjct: 4 EHKWYIIKVNYGHERNILELVSNAV-------YFKEVFIPYQTVCNSKSDIKEVCE---- 52 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVD 109 V V M + D S ++ +GF G S + D+EV+ Sbjct: 53 ---VYVCMYLCDESRDILSKT---LGFHSGDSSNFKIVLDEEVN 90 >UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 Tax=Anaplasmataceae RepID=B9KHV6_ANAMF Length = 188 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 2/182 (1%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 + WY+VQ SG E +VA + E + M +F EV +P EEV +++ ++ Sbjct: 5 HDDSGHEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMR 64 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV--G 119 RK PGYV + M ++D + + VR VP+V F+ + P I E++ + + + + Sbjct: 65 RKLSPGYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSS 124 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + FE G+ V +NDG F DFNG VE V+ +K VSV IFGR T +E S ++ Sbjct: 125 EAASEVCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQ 184 Query: 180 KA 181 K Sbjct: 185 KV 186 >UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 Tax=Rhodopirellula baltica RepID=Q7UMY8_RHOBA Length = 225 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 5/183 (2%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRK 59 + + WY+++ E +A +LR+ +++ +M + FG+++VP+E+V R G+RR Sbjct: 42 VDDESPMDWYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRV 101 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 S+RK PGY++V M +ND +W LVR V + F G +P P+ ++V+ +NR Sbjct: 102 SKRKLLPGYIMVYMSINDDTWFLVREVGGISDFTGSAG-KPQPMEPEDVERFINRPAVDD 160 Query: 120 DKPRP---KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + P F+ G+ VRV +G F + G V+ VD R+ V ++IFGR+ P+ELD Sbjct: 161 EDETPIKTAIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHW 220 Query: 177 QVE 179 QVE Sbjct: 221 QVE 223 >UniRef50_O51355 Transcription antitermination protein nusG n=22 Tax=Borrelia RepID=NUSG_BORBU Length = 184 Score = 155 bits (392), Expect = 8e-37, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 7/179 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +S +E ++ +R I + +V P E+V EIR G++R ERK +PGY Sbjct: 5 WYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKIWPGY 64 Query: 69 VLVQMVMNDASW----HLVRSVPRVMGFIG-GTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 +L+++ + + W + V V+ F+G RP PI+D+EV ++ ++ Sbjct: 65 ILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIKANKS 124 Query: 124 PKT--LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE GE VR+ GPF F G++ +DYE+ +LKV+V IFGR+TPVE+DF +EK Sbjct: 125 IFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQHIEK 183 >UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 Tax=Mollicutes RepID=Q2ST07_MYCCT Length = 214 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 25/198 (12%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 K +W+V+ +G E +V L++ IK ++ED + + V G + S + Sbjct: 15 EAKGQWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSG---KASIKN 71 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRL------ 115 FPGY+ + M+M++ +W L+R+ P V GFIG G +P+P++ +E ++ Sbjct: 72 KFPGYIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQ 131 Query: 116 --------------QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 + V K F+ G++V+V G + G V+++DY K V+ Sbjct: 132 AHEEEKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVA 191 Query: 162 VSIFGRATPVELDFSQVE 179 + +FGR T +E+ F VE Sbjct: 192 IEMFGRWTTLEVSFKNVE 209 >UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXH4_STRM9 Length = 190 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 100/187 (53%), Gaps = 20/187 (10%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++ +SG+E +V T L + I ++ D ++VP E++ E + G+ RK FP Sbjct: 10 KKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFP 69 Query: 67 GYVLVQM-------------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN 113 YVLV+M ++ +W+++R+ V GF+G SD P P+ +KEV+ I + Sbjct: 70 SYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSD-PLPMDEKEVEEIFS 128 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 ++ + + K +E G+ V+ DG G VE +DY ++K+ + + R T + L Sbjct: 129 KMS--NEDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTL 182 Query: 174 DFSQVEK 180 ++V K Sbjct: 183 GLNEVTK 189 >UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFX3_MYCFE Length = 205 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 19/193 (9%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGE--------------VMVPTEEVVE 51 +WY++ SG E +V +L+ I +ED F + P E + Sbjct: 8 NFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQ 67 Query: 52 IRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVD 109 G + + + GY+ + M M D +W +VR+ V G IG G +P P+S ++D Sbjct: 68 KNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQID 127 Query: 110 AIMNR---LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 + LQ+ DK T F+ GE+V + DGPF G V E ++ V + G Sbjct: 128 KSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLG 187 Query: 167 RATPVELDFSQVE 179 + TP + ++ +++ Sbjct: 188 KKTPADFEYKEIK 200 >UniRef50_O84322 Transcription antitermination protein nusG n=14 Tax=Chlamydiales RepID=NUSG_CHLTR Length = 182 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 70/174 (40%), Positives = 107/174 (61%), Gaps = 3/174 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYVVQ F+ E +V SL + + M D ++++P+E V+E++ G+ + E+ +P Sbjct: 2 FKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+LV+M + D SW V+ V+ F+GG + P +S++EV I+ L++ K Sbjct: 62 GYLLVKMHLTDESWSYVKKTQGVVEFLGGGA--PVALSEEEVKNILADLEEKKSGVVQKH 119 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVE 179 FE G V++NDG F +F GVV EV ++K RL V VSIFGR T V +L+F QVE Sbjct: 120 KFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVE 173 >UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=B3PLY8_MYCA5 Length = 197 Score = 148 bits (374), Expect = 9e-35, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 12/185 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV---P----TEEVVEIRGGQRRK 59 +WY++ SG E V SL+ I +M++ F E+ + P E + +G + + Sbjct: 10 FKWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKV 69 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQ 117 + GY+ + M+M D +W+LVR+ V G IG G +P PIS + + ++ + Sbjct: 70 KYLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIA 129 Query: 118 VGDKPR---PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 + +K +T+F+ G +V++ G F G + + + + V++ +GR P E+D Sbjct: 130 LAEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQYGRKVPTEID 189 Query: 175 FSQVE 179 + +E Sbjct: 190 HADLE 194 >UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=Q4A951_MYCHJ Length = 190 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 10/184 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVM---VPTEEVVEIRGGQRRKSERKF 64 +WY++ S E + L+ IK N+E+ F E+ VP E + G+++ R Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNR----LQQV 118 + GY ++M M D +W +VR+ V G +G G +P PIS ++ + + + + Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS-IFGRATPVELDFSQ 177 +E G+ V+V GPF+D G + E++ K+ + V + +FGR TP ++ Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEYKN 184 Query: 178 VEKA 181 ++K Sbjct: 185 LKKV 188 >UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC6_9BACT Length = 177 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 4/174 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG E +V T++ + + +E G ++VP + IR G++ + ++K F Sbjct: 2 KWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFTS 61 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 YV+++ M + + V F+G P P+S +EVD ++ D Sbjct: 62 YVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVYS 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + PG+MV+V GPF DF G+V++ ++L + V++FGR TPVEL+ SQVE Sbjct: 122 YM--PGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVE 173 >UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXI2_MYCAP Length = 199 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 19/194 (9%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGE--------------VMVPTEEVV 50 + WY++ SG E +V SL+ I +E+ F + V+ E Sbjct: 2 QRFMWYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEK 61 Query: 51 EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEV 108 + G + + GY+ + M M D +W +VR+ V G IG G +P P++ KE+ Sbjct: 62 KALGEPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEI 121 Query: 109 DAIMNRLQQVGDKP---RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 D + +Q+ + + F GE+V + DGPF G V E + ++ V V F Sbjct: 122 DLAFEKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHF 181 Query: 166 GRATPVELDFSQVE 179 G+ P + D+S VE Sbjct: 182 GKKVPTDFDYSVVE 195 >UniRef50_A5CC98 Transcription antitermination protein nusG n=2 Tax=Orientia tsutsugamushi RepID=A5CC98_ORITB Length = 184 Score = 143 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 2/173 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY+++ SG E + ++ E + F E+++P +VV+++ G+ +K PG Sbjct: 10 QWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTMPG 68 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+L++M M D ++ V ++ F G S + +++KEV +M +L+ P Sbjct: 69 YILIKMDMIDQVKDFMQKVVKLNRFPGNES-KIVQVTEKEVQEMMVQLENKAQDPSFLEK 127 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 ++ GE VRVNDGPF F G +EEVDY K LK+S+SIF R+T + +DFSQVEK Sbjct: 128 YQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEK 180 >UniRef50_A6FV14 Transcription antitermination protein nusG n=2 Tax=Rhodobacteraceae RepID=A6FV14_9RHOB Length = 177 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M+ + RWY+VQ I N++ + +P ++V R G+ + Sbjct: 1 MTLEAQIRWYLVQFKPNS---------HKIAARNLQRQSFQTFLPMQDVTRRRAGKFHTA 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 + FPGY+ V + W + + V + + RP P+ D V+A++ R G Sbjct: 52 PQPLFPGYMFVSLDTIRGPWRQINATLGVSKLV-SVAGRPQPVPDTLVNALLERCDDDGK 110 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 P+T F PGE V + GPFA F VE++ ++ R+ V + G+AT +++D + Sbjct: 111 LLPPET-FSPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQVDADIL 166 >UniRef50_B5Y935 Transcription antitermination protein nusG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y935_COPPD Length = 182 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 13/183 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR--KSERKF 64 K+WY+V G E VA +++ + +V+VP E +E RG + R + +R Sbjct: 2 KKWYIVTTVHGKESAVAEAIKLRAENAG-NTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60 Query: 65 FPGYVLVQMV-------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 +PGYV V++ ++ +W L+R P V GFI P P+ D E++ ++ Q+ Sbjct: 61 YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVL---QK 117 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 ++ K + G+ V V DG GVV +VD+EK ++ V +S+FGR +LD Q Sbjct: 118 SREQEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQ 177 Query: 178 VEK 180 V K Sbjct: 178 VRK 180 >UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZE8_DESAS Length = 164 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 11/174 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ +G E V + ++E +VP +VE R G + ER FPG Sbjct: 2 HWYVIHCLTGHEEDVRSRVKEK--------DIARAVVPRRLMVERRQGGWQYVERVVFPG 53 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV VQ M A+++ +R++P V+ +G + RP P+ EV + +L + GD + Sbjct: 54 YVFVQAHMTPAAYYAMRNLPGVIRVLG--TSRPVPLMGNEV-TLFLKLCRDGDPLGLSEV 110 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F G V+V GP G + ++D + R KV++S+ G VEL S ++K Sbjct: 111 FVKGGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKKT 164 >UniRef50_UPI00016C58F1 transcription antitermination protein NusG n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C58F1 Length = 223 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 25/203 (12%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG--------- 54 KK+WY ++ SG E + ++ I + +ED+FG++MVP E+V+E + Sbjct: 21 ENKKKWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTG 80 Query: 55 -----GQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG-----GTSDRPAPIS 104 ++ + + K F GY+ ++ ND +L+R V F+ + P P+S Sbjct: 81 EYNTVERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMS 140 Query: 105 DKEVDAIM-NRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKS-----RL 158 D EV ++ ++ + K FE G+ VR+ +G F D G V++V K ++ Sbjct: 141 DAEVKQMLGEKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKV 200 Query: 159 KVSVSIFGRATPVELDFSQVEKA 181 V+V+ +GR VEL++ QV KA Sbjct: 201 IVTVTFWGRPLDVELEYWQVTKA 223 >UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIE4_EGGLE Length = 170 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 5/173 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV Q +G E R + MED +P EV+ G+ R +R FPGY Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPSVMED----CFMPEYEVMWKIRGEWRLVKRLLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + +A + VP + +G + P++ KE D ++ + R + Sbjct: 58 LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMD-GNHTVRMSEGY 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ + V GP F G + ++D K R + VS+FGR P + V K+ Sbjct: 117 ISGDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRKS 169 >UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A2_THETN Length = 179 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 10/175 (5%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K WYVV + E RV + K + L + VP ++ R G+ ++ E K F Sbjct: 13 KPLWYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIF 72 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYV V+ VM +R + V F+GG + P PI+ +EV + + Sbjct: 73 PGYVFVKAVMTPEVMAAIRRINGVAHFVGG-GNEPVPITPEEVKRARIQDDLSEE----- 126 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ G+ V + DGPF +F G + ++ E ++ +++S+F R ++ Q+ K Sbjct: 127 --FKAGDTVMITDGPFENFIGKIIKI--EGRKINIALSLFDREMGIDFSPEQIMK 177 >UniRef50_A3WUF1 Transcriptional antitermination protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF1_9BRAD Length = 170 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 12/179 (6%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A ++WYVVQ EG+ A LR EV +P + + Sbjct: 3 ASGQQWYVVQTHPHAEGKAAAHLRR---------QGFEVYLPRYARRRRHARRVDITASP 53 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG-DKP 122 FP Y+ V + + W +RS V + + D PAP+ D V + R G + Sbjct: 54 LFPRYLFVAIDLVHQRWRAIRSTVGVTNLV-YSGDEPAPVPDDVVRRLKQREDSKGCVQL 112 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F G+ VRV DG F+D G+ E + + R+ V + + GR V +D +E A Sbjct: 113 DLAPRFSAGDTVRVVDGAFSDCLGLFESM-SDGERVLVLLDLLGRKVRVTMDIDTIEAA 170 >UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WZX9_RHOS5 Length = 174 Score = 129 bits (324), Expect = 5e-29, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 12/173 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+VQ I N+ V PT+ + G + R + ++ FPGY Sbjct: 13 WYLVQTKPNA---------FRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGY 63 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V+ W + + V + + P+P+ + + R G P+ L Sbjct: 64 LFVRFNPEFPQWRAINATYGVSRLVTF-GNIPSPVPHALIAGLRQRCANDGTLLPPEQL- 121 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ VR+ GPFAD+ VE+++ +K R+ + + I G T ++ + ++KA Sbjct: 122 SLGDRVRIISGPFADYVATVEQIEPDK-RVWILLDILGGQTKTQIQIAALQKA 173 >UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGE4_KOSOT Length = 354 Score = 129 bits (324), Expect = 6e-29, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 6/131 (4%) Query: 55 GQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 + + + +PGY+ ++M+M D +W+LV+S P V+ F+ P + KE+ A++ Sbjct: 223 KIFKITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQ-PIELKPKEIKALLRL 281 Query: 115 --LQQVGDKPRP---KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 L++ +K RP + FE EMVR+N GPF DF G + E+D E+ +KV VSIFGR T Sbjct: 282 VGLEEYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRET 341 Query: 170 PVELDFSQVEK 180 PV L+ S++EK Sbjct: 342 PVMLNLSEIEK 352 Score = 51.0 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTE 47 +K+WY++Q +SG E + +L ++ + + LFG ++VP E Sbjct: 2 RKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPEE 43 >UniRef50_C6PET8 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PET8_CLOTS Length = 187 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 4/174 (2%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 ++WYV+ +G E +V + N + + V++P ++E +G +R + + FP Sbjct: 5 EKWYVIYTRTGDELKVKRLIELLFSKLNKKPI--RVLIPKRAIIERKGKKRVEKIKFLFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV ++ M ++ + +P + F+ + PA + D E+ I++ + D T Sbjct: 63 GYVFIKTNMCFEIYYEISKLPHFLKFLKDEME-PAEVRDDEIRIILSLVGD-SDIVGFST 120 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G V++ DGP F G++E++D K R+KV +++ G A V+L VEK Sbjct: 121 GIKIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEK 174 >UniRef50_Q982S4 Transcription antitermination protein nusG n=1 Tax=Mesorhizobium loti RepID=Q982S4_RHILO Length = 182 Score = 128 bits (322), Expect = 9e-29, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 15/183 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK--- 59 + P+ RWYV++ E R ++ + + N+E VM+ TE + RG ++ + Sbjct: 8 DGPEARWYVLRV----EDRADIAVDKLLGEANVE----RVMLHTECEAKRRGRRKHQSLE 59 Query: 60 -SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 FPGY+ V++V A+W +R+V V+G IGG D P+P+S++E+ R++ Sbjct: 60 PVRVPSFPGYIFVKVVSCAATWAGLRTVSGVLGPIGGC-DGPSPVSEQEILKFQARIEND 118 Query: 119 GDKPRP-KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + + G+ V ++ GPFA F VV + +K ++ V V IFGR TP+ ++ Sbjct: 119 PEAIAVLTNALKAGDKVSIDSGPFAGFEAVVLML-GDKHKVHVEVDIFGRKTPIGFALAE 177 Query: 178 VEK 180 V K Sbjct: 178 VTK 180 >UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDM6_PARUW Length = 124 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 3/117 (2%) Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 +PGY+L++M ++D SW V++ V+ F+GG D+P P++D EV I+ L+ K Sbjct: 1 MWPGYLLIKMNLSDESWQYVKNTNGVIDFLGG--DKPTPLTDFEVGEILKDLEDKKRKIT 58 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVE 179 K FE G+ V++ DG F +F G V EV ++K RL V VSIFGR T V +L+F QVE Sbjct: 59 QKHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVE 115 >UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6V9_DESAP Length = 173 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 11/174 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W V E A L EV +P V RG + FPG Sbjct: 4 QWCAVNTKPKKEDFAARQLEAK---------GLEVFLPRISVTRKRGASKFSLWEPLFPG 54 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRPKT 126 Y+ V+++ V P V + D P P+ D+ + I R+ G P+P+ Sbjct: 55 YLFVKLLPEPVQVQRVNWTPGVRRLLC-AGDTPVPVPDEAIALIRQRVGPGGRLTPKPQA 113 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G V V GPFA GVVE+ + R++V + + R T VE+D +++ Sbjct: 114 EFPAGSRVAVRHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDR 167 >UniRef50_P29397 Transcription antitermination protein nusG n=12 Tax=Bacteria RepID=NUSG_THEMA Length = 353 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 59/131 (45%), Positives = 88/131 (67%), Gaps = 6/131 (4%) Query: 55 GQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 + RK FPGYV V+M+MND +++ VRSVP VMGF+ + +P P+ D+E+ I+ Sbjct: 222 RIYKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFV-SSGGQPVPVKDREMRPILRL 280 Query: 115 --LQQVGDKPRPKTL---FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 L++ +K +P + F+ G+MV++ GPF DF GV++E+D E+ LKV+V+IFGR T Sbjct: 281 AGLEEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRET 340 Query: 170 PVELDFSQVEK 180 PV L S+VEK Sbjct: 341 PVVLHVSEVEK 351 Score = 49.8 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 29/44 (65%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEV 49 KK+WY+V SG+E +V ++ + ++ +++L G +++P E V Sbjct: 2 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVV 45 >UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKF0_9FIRM Length = 186 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 6/174 (3%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +RWY VQ +G E V ++ I ++ E +P E ++ G+ K + FP Sbjct: 2 ERWYAVQVRTGREEAVLQLSKKMIDGSVLK----ECFIPYYERMKRYQGEWHKEQYILFP 57 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ + D + ++ VP + +G PI ++E I+ ++ Sbjct: 58 GYIFLVTEQVDELFWELKKVPGLTKILGD-GMEFVPIKEEE-KVILQKMGGSDHIAEMSK 115 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G++V V GP + G ++ +D K + + +FGR T V L V K Sbjct: 116 GYVIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMK 169 >UniRef50_C2NS75 Transcription antitermination protein nusG n=2 Tax=Bacillus cereus group RepID=C2NS75_BACCE Length = 179 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 10/172 (5%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + SG+E V + + ++ + V+VP + V E R G + RK PGY Sbjct: 6 WYALCVRSGYEDLVESLILR-----DLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----PAPISDKEVDAIMNRLQQVGDKPRP 124 +L+ M+ ++ ++ +P F+ D I D+E+ I+ L G Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + FE G V V GP G++ +D K R K+ ++ G +++ Sbjct: 121 EAYFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVE 171 >UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVW1_SYNAS Length = 167 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 12/174 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY V S E +V T L + +P EV R +R++ FPGY Sbjct: 3 WYAVHTRSRHEDKVFTGLVQKSIT---------TFLPKIEVWSKRKDRRKRIMTPLFPGY 53 Query: 69 VLVQMV-MNDASWHLVRSVPRVMGFIGG-TSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + V M +++ + V V+ +G T P P+ D ++DAI R+ + + Sbjct: 54 LFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIR-RIVDSRVEVQNLQ 112 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GE R+ DGPF G V + DY+K V++ + R+ ++LD SQ+EK Sbjct: 113 YPHVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEK 166 >UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitrosomonas europaea RepID=Q82X31_NITEU Length = 165 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 15/176 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WY+V E N++ +P V ++ G + FP Sbjct: 2 HWYLVHTKPKQEK---------CAFQNLQQQGYRCYLPMLPVEKLHLGNLTVVDEPLFPR 52 Query: 68 YVLVQMVMND--ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 Y+ +Q+ D SW +RS V + PA I D +D + R+Q+ + +P+ Sbjct: 53 YLFIQLEQGDSAKSWVPIRSTRGVNRLVCF-GSEPARIDDILID--LLRMQEASFQHKPE 109 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 LF+PGE VR+ +G FA G+ + + E+ R+ V + + + + + + + K Sbjct: 110 RLFKPGERVRLTEGAFAGIEGIYQMAEGER-RVMVLIELLSKPVAMRVSPTSLRKT 164 >UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DDG1_LARHH Length = 172 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 16/181 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 K WY+V E L N++ + +P ++R G+ SE Sbjct: 5 SEEKMHWYLVHTKPRQE---------QCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEE 55 Query: 63 KFFPGYVLVQMVM--NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FP Y+ +++ + +D SW +RS V + PA I D ++ + Sbjct: 56 ALFPRYLFIRLGLGQSDKSWAPIRSTRGVNQLVRF-GTEPARIDDGLIERLR---GHDAA 111 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + P+ LF GE VR+ DGPFA G+ + D E SR+ V + R + + K Sbjct: 112 RANPEPLFRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTRPVVARVAPGSLRK 170 Query: 181 A 181 Sbjct: 171 V 171 >UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP1_KANKD Length = 167 Score = 122 bits (306), Expect = 6e-27, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 14/181 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSE +K WY++ + E R L+ ++P EV I G+R+K+ Sbjct: 1 MSEC-EKSWYLINSKPKQELRALEHLKN---------QEINCVLPVLEVERIIRGKRQKA 50 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FPGY+ V++ N W +RS V F+ P + D ++ ++ + Sbjct: 51 IEPLFPGYLFVELQTNGQGWSKIRSTRGVRDFVRF-GGVPGRVPDSVLEHLL--ILDTSF 107 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P G+ V + DGPF D GV + + EK R V ++I G+ T +EL+ Q+ K Sbjct: 108 TPIETNAPGAGDKVIITDGPFKDLEGVFKISNGEK-RSIVLLTILGKVTEMELENKQLRK 166 Query: 181 A 181 A Sbjct: 167 A 167 >UniRef50_O67757 Transcription antitermination protein nusG n=7 Tax=Aquificales RepID=NUSG_AQUAE Length = 248 Score = 121 bits (305), Expect = 9e-27, Method: Composition-based stats. Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 46 TEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISD 105 E + + + K FPGY+L++ MND + P V + +P P+ + Sbjct: 116 KITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVM-VGGKPVPLKE 174 Query: 106 KEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 +EV I+N++++ K FE G+ VRV +GPF +F G VEEV EK +L V +SIF Sbjct: 175 EEVQNILNQIKRGVKP--SKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIF 232 Query: 166 GRATPVELDFSQVEK 180 GR TPVELDF QVEK Sbjct: 233 GRMTPVELDFDQVEK 247 Score = 49.5 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 1 MSEAP----KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ 56 MSE +K+WY +Q G E +L + ++L ++DL EV+VP EE V IR Sbjct: 1 MSEQQVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQG 60 Query: 57 RRK 59 + K Sbjct: 61 KEK 63 >UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVL5_CHRSD Length = 182 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 12/179 (6%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A + RWYVVQ G R L V P EV + R + Sbjct: 14 AARPRWYVVQCKGGESFRAGEHLTN---------QGYRVFHPVLEVQKKRRNKLVWIAEP 64 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKP 122 FP Y+ + + ++W +RS V+ +G D P P+ D ++ + R + Sbjct: 65 LFPHYLFIHLDRVASNWRPIRSTRGVLKLVGF-GDEPLPVPDALIETLAARAHLDEASRT 123 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F PGE+V + +GPF V + R V +++ +EL + ++ Sbjct: 124 SGNAYFRPGEIVEITEGPFQALQAVFD-TQQGDERAIVLLNMLHHQQRLELPVGHLRRS 181 >UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WL22_EGGLE Length = 172 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 5/172 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ G E V + + + E+L E +P EV + G + PGY Sbjct: 4 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 59 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V +RSVP+ +G D P+ D+EV I + + Sbjct: 60 IFVITDQPGKLREALRSVPKFTRLLGNN-DVFTPLDDQEVAFINAFTKPDHRVVEFSSGV 118 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G+ + + +GP + G+++++D K + + I GR V++ V K Sbjct: 119 MEGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170 >UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIA3_EGGLE Length = 170 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 5/172 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +G E V + ++ +D+ E VP EV + GQ R FPGY Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 ++V D +R VP ++ P+ EV I ++ Sbjct: 58 LIVVTDRVDELESQLRRVP-AFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGV 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G+ + V GP G + +++ K + + +FGR ++ V K Sbjct: 117 IEGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZB7_HALHL Length = 175 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 12/173 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+V + E R N++ +P R + + FP Y Sbjct: 15 WYLVYSKPRQEERA---------WWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRY 65 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + +++ W +RS V G + PA + D VD I R++ P+ L Sbjct: 66 LFIRLAAGLEDWSPIRSTTGVSGLVRF-GTWPARVPDGLVDTIRARIEDGHCDLAPEPL- 123 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +PGE VRV DGPF + G+ R+ + + + G+ T + + Q+E+A Sbjct: 124 QPGERVRVLDGPFQSYEGIF-RASRSDERVMILLDVAGQHTTLTVSQHQIERA 175 >UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomonas RepID=Q48H23_PSE14 Length = 170 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 16/179 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 A + RWY++Q E R LR + P + V+ + +++ Sbjct: 4 SAQEARWYLIQTKPRQEARAEEHLRR---------QHFQCYRPLQVDVKKTAAR-VQADE 53 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGY+ +QM +W+ +RS V + P P+ D ++ I RL P Sbjct: 54 PLFPGYLFIQMDQVQDNWYPIRSTRGVSRIVTF-GGHPVPVRDHLIEQIRQRL----STP 108 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 PK F G+ V + G ++D + D R + +++ R + L S + + Sbjct: 109 APKARFIQGDPVMITTGSWSDVEAIFLSED-GTERAVILLNMLQRQQKMGLPISSLSRV 166 >UniRef50_C8PLY0 Transcription antitermination protein, NusG family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PLY0_9SPIO Length = 186 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 8/175 (4%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 +Y VQ +G E L + I+ N E+ + P + + G R+K + FPGY Sbjct: 3 YYAVQVKTGKEPE----LLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGY 58 Query: 69 VLVQMVMNDAS--WHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + +++ W +R P F+ + P P+ D ++ + + L K Sbjct: 59 IFLEIDDLSLPLCWQ-LRKTPNFYHFLPNNQN-PLPLVDNDLSLLHHFLSFGEVTAPSKV 116 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F+ + V DG G + +VD K R KV + ++ + P++L F +E A Sbjct: 117 YFDANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIEPA 171 >UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RLT4_9MOLU Length = 173 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 76/175 (43%), Gaps = 5/175 (2%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 + WYV+Q +G E ++ + + I D+ E +P ++ G ++ + F Sbjct: 3 ENWYVIQVRTGKEEKIKNTCEKLISR----DILEECFIPKCIRLKKYQGTWKEVDEVLFK 58 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV + D ++ ++ +P + +G + PI +E + + + Sbjct: 59 GYVFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEE-AIFLLKFGKEKHIVDLSQ 117 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ + + GP + G+++++D K + V +F + T V++ + K+ Sbjct: 118 GYIEGDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGKS 172 >UniRef50_Q98R28 TRANSCRIPTION ANTITERMINATION PROTEIN n=1 Tax=Mycoplasma pulmonis RepID=Q98R28_MYCPU Length = 196 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 14/189 (7%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV-------PTEEVVEIRGGQR 57 K WY++ E V +++ + N+E F + + E + G Sbjct: 2 NKFNWYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDSY 61 Query: 58 RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRL 115 + +++ + GY+ ++MV+ + +W LVR+ V G +G G P PIS + ++ Sbjct: 62 KTTKKNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEEE 121 Query: 116 QQVGDKPRPKT---LFEPGEMVRVNDGPFADFNGV--VEEVDYEKSRLKVSVSIFGRATP 170 + ++ + F G V++ DGPF + V +++ ++EK + + G++ Sbjct: 122 TKKEEEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSVD 181 Query: 171 VELDFSQVE 179 ++D ++ Sbjct: 182 TQIDHKHLK 190 >UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P702_9FIRM Length = 169 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYV+Q +G E V +L HI + VP EE + + G FP Sbjct: 2 AKWYVLQVLAGQETAVRDAL--HI-------MGIRAAVPQEERLLRKNGGWTSRIYTLFP 52 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV + + + +++ V++VP V+ F+G + P+ ++ E + + L G+ +P Sbjct: 53 GYVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLR-LLSNGGEPLKPSR 111 Query: 127 LFE-PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 + E P VR+ +G +F D R +V +++ G + L Sbjct: 112 VEELPDGSVRIMEGVLQNFPVRSIHFDRRARRARVGITLCGEPKILTLS 160 >UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobacter RepID=A6F1J5_9ALTE Length = 163 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 15/172 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY +Q R T L ++ P V +I+ G+R K FPGY Sbjct: 3 WYALQHKPSQGDRALTHL---------QNQDIACFYPKITVEKIKAGKRTKQLEPLFPGY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V + D W +RS ++ + +++PA I D + I + L V ++ Sbjct: 54 LFVNLEQTDPMWAKLRSTRGILRIVSF-ANKPAAIPDDVIQHIKDSLHTVAEQGG----I 108 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PG+ V +++GPF + + D E R V +S + V++ S + + Sbjct: 109 KPGQAVELDEGPFKGIEAIFQAYDGE-ERAIVLISFMQKQQTVKVPLSTLHR 159 >UniRef50_UPI0001692BF2 putative transcription antiterminator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BF2 Length = 176 Score = 115 bits (288), Expect = 7e-25, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 75/177 (42%), Gaps = 13/177 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +G E V + ++ + +P + V E G RR R FPGY Sbjct: 3 WYVLFVTTGKEDVVGKYISNFCNHLSL-----QCFIPKKVVPECHKGVRRDVIRVLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP-------APISDKEVDAIMNRLQQVGDK 121 + ++ M+ ++L++ +P + + + + I ++E++ I + Sbjct: 58 IFIRTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTI 117 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + V+V GP ++++VD K R K+ V++ + V++ + + Sbjct: 118 EYSEVSI-INKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGINIL 173 >UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIP1_METNO Length = 230 Score = 115 bits (288), Expect = 8e-25, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 25/185 (13%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVP----TEEVVEIRGGQRRKSERK 63 RW++V +G K D +P +EEVV +R G+ ++ Sbjct: 58 RWHLVDCRAG-------------KARQFADALAAGAIPALRLSEEVVRVRSGRPIRTRMP 104 Query: 64 FFPGYVLVQMVMNDASWHLVRS-VPRVMGFIGGTSDRPAPISDKEVDAIMNRL------- 115 F + V + + H +R R + + ++ + +E+D L Sbjct: 105 LFGRLLFVGLDPHSEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLGGDVPPA 164 Query: 116 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 ++ FE GE VRV DGPFA F+G+VEE+D E LKVSVSIFGR+TPV L+ Sbjct: 165 ERRTGAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLEP 224 Query: 176 SQVEK 180 +QVEK Sbjct: 225 TQVEK 229 >UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCF2_PSEPF Length = 178 Score = 114 bits (287), Expect = 9e-25, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 13/178 (7%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + + WY++Q + R H+ L + + +E V+ G+R++ + Sbjct: 5 SSDQPNWYLLQCKPRQDERA------HLNLLQQNYVVFHPQLVSERVI---RGKRQRVQE 55 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGY+ +Q+ +D W +RS V F+ PA +++ ++ + R + Sbjct: 56 SLFPGYLFIQLSRDDN-WAPLRSTRGVSRFVEFNHG-PATVAEHVIEHLRARCLE-STLS 112 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P +PGE +++ GP A GV + + R+ + + R PV L S +E+ Sbjct: 113 EPDEALKPGENLQIVSGPLAPLEGVFLGL-HGTDRVMILLQFLNREQPVCLPLSVIER 169 >UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE68_9RHOB Length = 166 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 12/173 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+++Q H N+ E +P ++ + + + R FP Sbjct: 3 KEWFILQFKPNS---------HHQATKNLTRQGFETFLPLTDITSRKTSRFINTTRPLFP 53 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ + WH + + V + S+ + I V+ +M R + K P Sbjct: 54 GYMFITFDRTKPEWHKINNTYGVSRLVTFNSNLKS-IPTTLVENLMVRCD-LSSKILPVE 111 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V++ GPFA+F VE + + R+ V + + R T ++ +E Sbjct: 112 NLKKGDQVKILHGPFANFIATVETYETD-QRIWVLMDLMSRKTKIQTPLDALE 163 >UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella burnetii RepID=A9ND88_COXBR Length = 167 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ E I N+E + +P +V R G + FP Y Sbjct: 7 WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + + ++ +W +RS V + PA + V + N P+ LF Sbjct: 58 LFILLNIDKDNWGPIRSTRGVSALVRF-GGIPAKVPPDFVQFLKNNETSASVPPKVS-LF 115 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G+ V++ DG A + GV E+ R+ + + + G+ T VE+ V Sbjct: 116 QKGQRVQIIDGVMAGYEGVF-EMYSGAKRVTLLLDMVGKVTRVEVPLDSV 164 >UniRef50_B1AJM2 Transcription termination/antitermination factor NusG n=15 Tax=Ureaplasma RepID=B1AJM2_UREP2 Length = 258 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 89/225 (39%), Gaps = 51/225 (22%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR------------ 53 + +WY+V SG E +V ++++ + + D ++ + E++ E++ Sbjct: 23 RHQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82 Query: 54 ---GGQR--------------RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGT 96 + + E F GY+ ++ M D W L+R+ V G +G + Sbjct: 83 NRANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142 Query: 97 SD--RPAPISDKEV----------DAIMNRLQQVGDKPRPKTL----------FEPGEMV 134 +P P+ + ++ A+++ ++V + + + FE + V Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEVDQEV 202 Query: 135 RVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 ++ F + ++D K V FGR ++L+F+ ++ Sbjct: 203 KIIADTFFGEIAKIAKIDQNKKIATVEFEFFGRINTLDLNFNDIQ 247 >UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S2H9_9CLOT Length = 160 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 15/167 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +G E +A L D+ + + P E GG E FPGY Sbjct: 3 WYVVQVRTGEEKDIAAKL---------TDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V +QM N +++ +++VP ++ + GT ++ E + I Q G P + Sbjct: 54 VFLQMDYNAGNYYRLKAVPGIVKLLSGT------LTYLEAEWIRLLAGQGGRPLEPTLMR 107 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 E E + + G +F + +D R + +SI G V+L Sbjct: 108 ETEEGLEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLGI 154 >UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPM2_9BACT Length = 150 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 9/117 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY +QA SG E + L I+ +M+D EV++PTE+V +R G++ RKF+PG Sbjct: 6 QWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNRKFYPG 65 Query: 68 YVLVQMVMNDA-------SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 Y+ V + + D WH V++ ++ F+GG D+P P+SD E+ + L++ Sbjct: 66 YLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLGG--DKPVPLSDDEIQILSVSLRK 120 >UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QKQ8_NITHX Length = 196 Score = 112 bits (280), Expect = 6e-24, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 27/197 (13%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVM---VPTEEVVEIRGGQRRKSER 62 K WYV+Q E + A L D + V+ VPT + R+ R Sbjct: 4 KSIWYVLQTRPAHEDKAARGLVAR-----GFDPYAPVVYRRVPTGRRDDKGRKLTREIAR 58 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV---- 118 FPGY+ VQ D + VR VP + G++ + P + D +D I + Sbjct: 59 PMFPGYIFVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFGRY 118 Query: 119 --------------GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 + R F+ G+ VRV G + D+ V + D + R+ + I Sbjct: 119 LDEEERARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVLLFHI 177 Query: 165 FGRATPVELDFSQVEKA 181 FGR T + D + +E A Sbjct: 178 FGRETKIHADQADLEVA 194 >UniRef50_Q1Q029 Similar to transcription antitermination protein NusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q029_9BACT Length = 169 Score = 112 bits (280), Expect = 6e-24, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E W+ V S E +V + LRE +P + + R +++ + Sbjct: 2 EKNVAYWFAVHTRSRHEKQVDSFLREKNISS---------FLPLVKTISRRRDRKKFIDV 52 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR-PAPISDKEVDAIMNRLQQVGDK 121 FPGY+ V + +++ + ++S V+ IG D P+PI D E++ + L Sbjct: 53 PLFPGYLFVNITLDN--LYEIKSTRGVVRIIGNEDDFIPSPIPDAEINN-LKTLINSNVA 109 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 P + G VRV GP G++ + R+ VS+ I ++T E+ + +E Sbjct: 110 IDPYKYLQKGTKVRVVSGPLIGLEGLLVK-RKTNYRVVVSIDILQKSTSAEISIADIE 166 >UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Clostridiales RepID=C6LL07_9FIRM Length = 183 Score = 112 bits (280), Expect = 6e-24, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 6/172 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q +G E R+ R I +E + +P EV + G+ + ++ FPGY Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGEWKTQKQILFPGY 72 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V V ++ V + IG T PIS+ E + ++ + Sbjct: 73 VFVVTSDIQNLHEELKKVIGLTKLIG-TGREIVPISENEKEFLLG-FGGEEQVVQMSEGI 130 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G V ++ GP G + ++D K + + + + G V++ V K Sbjct: 131 ITGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182 >UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT Length = 186 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 11/179 (6%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +E P+ +WY ++A E A LR+ + +V P + Sbjct: 13 AEIPEAKWYCLRAQPKHEHIAAARLRQCEE--------IQVFCPRVRIQRSTRRGLVWFT 64 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP Y+ + S LVRS V G + P + +D + ++ + Sbjct: 65 EALFPNYLFARFEWV-QSHALVRSCQGVSGIVRFGDHVPE-VPAGTLDDLRAYMED-AEL 121 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V + +GPF NGVV+++ + R+KV + + G AT V+L + V K Sbjct: 122 KTVSFNIDEGDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180 >UniRef50_Q4A648 Transcription antitermination protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A648_MYCS5 Length = 202 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 86/193 (44%), Gaps = 19/193 (9%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLF---------GEVM-VPTEEVVEI 52 + K RWY++ +G E + +L+ IK N+E F +V VP+ E+ Sbjct: 2 QNSKFRWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTEL 61 Query: 53 RGGQR----RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVM--GFIGGTSDRPAPISDK 106 Q+ + + FPGY+ V+ M D W+++R+ +V GG ++P P+S Sbjct: 62 NKKQKGLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQN 121 Query: 107 EVDAIMNRLQQVGDKPRPK---TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS 163 ++ + + ++ + G++V + DG + V+E++ E + ++S Sbjct: 122 QIRKSLEKEEEAKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNMAEISFE 181 Query: 164 IFGRATPVELDFS 176 F + +++ Sbjct: 182 DFNKKVEFKINLD 194 >UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIY4_SYNFM Length = 212 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 11/175 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+ + E V L + + +P E R +R++ FP Sbjct: 39 KSWFALYVQVKHEKEVVRRLDQK---------SIDCFLPLMECWSKRLDRRKRITLPLFP 89 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV V V+++ + + P + + S+ P PI +++ + + Sbjct: 90 GYVFVHTVLDNYTNVNILKTPGALSILKN-SEGPLPIPVYQIEN-LQTILNSSKSLDLHP 147 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE VRV GP + G+++ +K RL VSV ++ VELD VE Sbjct: 148 YLKEGEWVRVIRGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVEAT 202 >UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGR2_BREBN Length = 177 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 13/180 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E V LR + +++ + VP V E + G + FFPG Sbjct: 2 KWYAIFVESGKEEVVQKYLRLYFNEQSLKSI-----VPKRLVPEKKSGIVYNVLKNFFPG 56 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTS----DRPAP---ISDKEVDAIMNRLQQVGD 120 YVL+Q M + +H ++ +PR + + S D A I +KE+ I+ + Sbjct: 57 YVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGEV 116 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 K E V V GP G++++VD K+R K+ ++ G +++ + K Sbjct: 117 VDYSKVYLE-NSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILSK 175 >UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IAM8_METNO Length = 255 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +RW+V+ A F R A L + + D V + E G+RR +R Sbjct: 90 RRWHVMVAKPRFARRAAKDLTKAGIPAVLTD--ERVELVEE------SGRRRIVKRPLLR 141 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + V + A + R V + R + ++ + L + P Sbjct: 142 RVLFVGLPRCAAPEVVHRETYFVRDAVRDGCGRAIQVPADQLRRFVRALADTLTERDPNA 201 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 FEPG+ +R+ GPFA F+G++E+ DY RLKV+V IFGR +PV LDFS+VE+A Sbjct: 202 -FEPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVERA 255 >UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKC4_ALKMQ Length = 162 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 9/168 (5%) Query: 12 VQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLV 71 + S E + + + I+ +V+VP + E R G+ R ++ F GY+ + Sbjct: 1 MHVKSNEEMKAKKLVEKEIED-------IKVIVPQRIIPEKRQGETRHVKKILFTGYLFL 53 Query: 72 QMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPG 131 + ++ +++ ++ +P + F+G ++P I +E+ ++ Q K + + G Sbjct: 54 NVELDVDTYYKLKRIPSIHRFLG--LEKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEG 111 Query: 132 EMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 V+V GP G + +VD K R KV +S+ G A V+L ++ Sbjct: 112 NKVQVVSGPLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIK 159 >UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z6E4_BACA2 Length = 176 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 13/180 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E V LR ++ ++P ++V E + G + ++ +K FPG Sbjct: 2 KWYALFVESGKEETVQKFLR-----LQFDEQALYSIIPKKKVTERKAGIKYEALKKMFPG 56 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTS-------DRPAPISDKEVDAIMNRLQQVGD 120 YVL + M + ++H ++ +P + + I D+E+ I+ + + GD Sbjct: 57 YVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGE-GD 115 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 ++ V V GP G+++++D K R K+ +S G V + + K Sbjct: 116 TVDYSKVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLSK 175 >UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F316_9PROT Length = 172 Score = 108 bits (270), Expect = 9e-23, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 14/170 (8%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 K+W+ ++ E A +L EV +P G+ R F Sbjct: 2 SDKQWFAIRVKPRQESLAAANLER---------QGFEVYLPMINTRISHAGKVSWQPRPF 52 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG---DK 121 F GY+ V + +++ W +RS V+ + + P P+SD+ + + R + G Sbjct: 53 FAGYLFVHLSIDEQRWTTIRSTVGVLAPVAFGTFYP-PLSDQVIALLQARHDENGLIAVS 111 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 P++ F GE VR+ DG GV E+ + R + + ++ V Sbjct: 112 STPESPFRAGEKVRMLDGAMKGLEGVFIEM-RGQDRALILLDWMKKSMRV 160 >UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionales RepID=Q7MMR1_VIBVY Length = 168 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 13/175 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++ G + R L E+ E PT EV +I G+R+ FP Sbjct: 2 KKWYLLYCKRGEQIRAKQHL---------ENQGVECFYPTIEVEKILRGKRQIKSEPLFP 52 Query: 67 GYVLVQMVMN-DASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP-RP 124 Y+ V+ ++ VRS V+ F+ P + + + Q+ + Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKF-GAHPKELQGDLIYELKLLEQEGHQSALQG 111 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 L +PG+ ++V G FA + +E D E R + V + + PV ++ S +E Sbjct: 112 SNLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165 >UniRef50_B9HCH7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HCH7_POPTR Length = 342 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 59/230 (25%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPT-EEVVEIRGGQRRKSERKFF 65 +W++V+ S G + + + N + +V P+ +E +++ G + F Sbjct: 109 PQWWIVRV-SRIRGDETSDVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKPKPIF 167 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTS-------DRPAPISDKEVDAIMNRLQQV 118 PG V + V+N VR V GF+G ++P P+SD +++A+ + ++ Sbjct: 168 PGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAVFQQAKEE 227 Query: 119 GDKPRPKTLFE------------------------------------------------- 129 +K E Sbjct: 228 QEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSRKKGDLP 287 Query: 130 -PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G VRV G FADF G +++++ + + V V++FG+ + VELD S++ Sbjct: 288 KTGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337 >UniRef50_Q2GD85 Putative transcription termination/antitermination factor NusG n=2 Tax=Neorickettsia RepID=Q2GD85_NEOSM Length = 176 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 15/182 (8%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS + W V++ SG E +V ++ + DLF +V + + Sbjct: 4 MSSSSDHTWCVLRVRSGSESKVCDLIKSRC-SDEVVDLFSPALVKFDA----------SA 52 Query: 61 ERKFFPGYVLVQMVMNDA---SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 ++F PGYV V++V A ++RS+ + + P +SDK++D + N + Sbjct: 53 SKRFLPGYVFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLS 112 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 P G V + F G V+E+D S+ KV + G+ V + Q Sbjct: 113 PEVTPES-GKISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQ 171 Query: 178 VE 179 ++ Sbjct: 172 LK 173 >UniRef50_A4YU22 Transcription antitermination protein nusG n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YU22_BRASO Length = 201 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 16/179 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+++ E +V + R + VM ++E +R G R Sbjct: 31 WYILRTHPHCEAKVMKAFRLRNISA-----YLPVMTVSKEFRRMRRGFEWIERRDVVSPL 85 Query: 69 VLVQMVMND--ASWHLVRSVPRVMGFI--GGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 +L +++ D W R V +G + G + R P +++ I + + + P+ Sbjct: 86 ILGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDIRKI----EDIANTPKS 141 Query: 125 KTL--FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 K FE G++VRV GPF F+ VE +D + RL V IFGR TP+++D ++E Sbjct: 142 KRARAFEVGQLVRVLSGPFRYFSARVERID-SRGRLSVGAEIFGRITPIDIDEGEIEAV 199 >UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V684_9RHOB Length = 171 Score = 104 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 4/152 (2%) Query: 29 HIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPR 88 + L N+E PTE E RG + + FPGYV VQ V S Sbjct: 21 LMALRNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAASGGVRAVNSTRG 80 Query: 89 VMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVV 148 + + PA + + A+ R P P+ F+ G+ VR+ DGPFA+F V Sbjct: 81 ITKLVT-LGQGPAIVPAGLIAALRIRFAPPDITPAPQ--FDQGDWVRILDGPFAEFVAQV 137 Query: 149 EEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 E R+ + + + GRAT V +D +++ Sbjct: 138 EAT-PAAERVYLLIDLMGRATRVAVDARSLKR 168 >UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 Tax=Thermoanaerobacter RepID=B0K4N5_THEPX Length = 179 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYV+ SG+E +V + K ++++P +++E GQ + + FP Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV V M+D ++ + V + G RPA + ++E+ I++ + K Sbjct: 56 GYVFVNAEMSDDLYYKISEVLK-RGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKG 114 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + E GE V++ +GP + G+++++D K R KV SI G V+L +E Sbjct: 115 IME-GERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166 >UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WBC3_MAGSA Length = 167 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 12/172 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+VV + E A L+ +V +P + + FP Y Sbjct: 4 WFVVHTHANAEKIAAGHLQR---------QHFDVYLPQYSKRRSHARKVEWVKAPLFPRY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG-DKPRPKTL 127 + ++M + W +RS V + P P+ +D I R G Sbjct: 55 LFLRMDPDLTPWFSIRSTVGVHSLVCRGGM-PVPLGQVIIDEIRGREDDSGLVSLGEAMP 113 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 F G+ + + +GP A+ G+ + +D + +R+ + + + GR V + V Sbjct: 114 FASGQRLEIVEGPLAEQLGLFQGLD-DMNRVVLLLDLLGRQVRVRVPLEAVR 164 >UniRef50_B6TZG2 Transcription termination factor nusG family protein n=2 Tax=Andropogoneae RepID=B6TZG2_MAIZE Length = 336 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 52/224 (23%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEV-VEIRGGQRRKSERKFF 65 +W++V+ S G L ++ ++ P+ +V ++ G + Sbjct: 103 PQWWLVRV-SMAPGTDYVDLLTKAISRRYSEVPFKIYNPSIQVKRRLKSGAISVKSKPLH 161 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-------RPAPISDKEVDAIMNRLQQV 118 G V + +N +R GFIG T +P PI EV++I+ ++ Sbjct: 162 AGLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDEVESIIREEKEE 221 Query: 119 GD-------------------KPRPKTL------------------------FEPGEMVR 135 + KP ++ F PG V Sbjct: 222 QERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTRHSAFSPGATVH 281 Query: 136 VNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 V GPFADF G + EV+ + + V +S+FG+ + V+LDF Q+E Sbjct: 282 VLSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIE 325 >UniRef50_B8KUX9 Transcription termination factor nusG domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX9_9GAMM Length = 214 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 16/164 (9%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A +RWYVV + EG + L P ++ + + G+ ++ Sbjct: 18 AAPRRWYVVASKPRSEGVAKSQLER---------QGFVTCAPRIKLRKRQRGKWQQVIEP 68 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP- 122 FPGY+ V + + +RS +G + P+ +A+M L +G+ P Sbjct: 69 LFPGYLFVALRLGVDDPAPIRSTLGCIGLV-RMGREFVPVP----EAVMQPLLSIGESPD 123 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 + +F+PG+ VR GPF +G+ ++ + R +V +++ G Sbjct: 124 ASEAVFQPGQAVRFEAGPFEGLSGIF-KMPKGQDRAEVLITLLG 166 >UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 Tax=Chlorobiaceae RepID=Q3AU98_CHLCH Length = 197 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 12/160 (7%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M+E + WY V S +E +V +L E +P E + +++K Sbjct: 1 MAEIITPQNWYAVYVRSRYEKKVYQALLEREVNS---------FLPLYETIRQWSDRKKK 51 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 F GYV V + M S V V+ FIG +P+ I+++E++ + +++ Sbjct: 52 VSEPLFRGYVFVNIAMQQESI-KVLDTEGVVKFIG-IGRKPSVIAEREIEWLKKLVREPE 109 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLK 159 R G+ VRV GPF D GVV + E + Sbjct: 110 AISRTVASLPAGQKVRVIAGPFKDMEGVVVKEGRESQIVI 149 >UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter sp. MED105 RepID=A6GM36_9BURK Length = 179 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ-RRKSERKFF 65 +WYV+ E +L+ V P V + + GQ + F Sbjct: 14 AQWYVMYTKPRQETVALENLQR---------QNYNVFFPQARVQKRKTGQGTVQVVEPLF 64 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P Y+ +Q+ + + + +RS + + +P+ + + ++ I ++L K Sbjct: 65 PRYMFIQLEVGVSDFSKLRSTKGCVDLVKF-GGKPSVVPIELIELIQHQLDSDSVLDLLK 123 Query: 126 T-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 E G VRV +GPF G + + R+ V +++ G VEL SQ++KA Sbjct: 124 LNELEVGGEVRVAEGPFEGMMGKIAARKSD-QRVIVLLNVLGAERSVELAQSQLDKA 179 >UniRef50_A9BF38 Transcription antitermination protein nusG n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF38_PETMO Length = 354 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGYV V+M+ + LV ++P V + +P ++ EV ++ + + + Sbjct: 231 NLFPGYVFVEMMYIKETEELVSNLPYVSTIL-NIGGKPVKLNKNEVRFVLRVMGEEAYQK 289 Query: 123 R----PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R +T FE GE V++ +GPF F G +++ D EK ++V V++FGR T V L ++ Sbjct: 290 RQVKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFGRETTVTLSLGEI 349 Query: 179 EK 180 EK Sbjct: 350 EK 351 Score = 55.6 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +K WYV+Q +SG E +V +L E IK E FG++++P EV E+ +R + Sbjct: 2 RKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIP--EVDELNYSNKRVQK 55 >UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCE7_9ACTN Length = 217 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 5/178 (2%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + + WYVV +G E ++L + I+ E + E P RGG+ E+ Sbjct: 32 SQEVPWYVVNVPTGRE----SALCKVIERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKT 87 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 PGYV+V L+R VP + + P++D E I ++ Sbjct: 88 LLPGYVIVATEQIGRVKRLLREVPEYTR-VLNMGESFVPLADGERAWIDAFTRKGERCVP 146 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ V V GP ++ V+ +S V + I GR ++ V +A Sbjct: 147 MSMGVMEGDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSRA 204 >UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB35_9ACTN Length = 170 Score = 102 bits (254), Expect = 7e-21, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 5/162 (3%) Query: 19 EGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDA 78 E R A + + + + VP EV + GQ + K FPGYV V+ Sbjct: 13 EDRAAALIAKIAQGA-----VDDCFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQ 67 Query: 79 SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVND 138 + VP + D P++ EV I G+ V V Sbjct: 68 IREALGRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEMSEGVIEGDCVMVIR 127 Query: 139 GPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GP + +D K V + +FGR + + V K Sbjct: 128 GPLKGHEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169 >UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACI7_ALHEH Length = 177 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 ++E + R WY++ E +L +P VV+ RG +R Sbjct: 6 VTEQQEHRAWYLIYTKPRQEEAARDNL---------GRQGFHAWLPRVRVVKRRGTRRVP 56 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 FP Y+ V++ W + S V + PA + V A+ R + Sbjct: 57 VVEPMFPRYLFVELDSAYQDWSPISSTLGVTSLVRF-GGVPAKVPGPLVAALQARADEDD 115 Query: 120 D-KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G+ VRV G FA + V + + R+ V + + G+ + V L + Sbjct: 116 ICDLSARQQPRAGDTVRVAHGAFAGYEAVFQA-RSGRERVLVLLEVAGKQSRVTLPADDI 174 >UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosococcus oceani ATCC 19707 RepID=Q3J8A9_NITOC Length = 174 Score = 101 bits (253), Expect = 9e-21, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 11/179 (6%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S + KK WY++ E + N+E E +P + R +R + Sbjct: 4 SPSSKKFWYLIYCKPRQE---------RLAQENLERQNFETYLPLVRQMRRRAYRRIATV 54 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP Y+ + + +W +RS V+ + +PA + D + + G + Sbjct: 55 EPLFPRYLFIHLDTEKDNWGSIRSTIGVISLVRF-GAQPAHVPDTLIRELQTHEGSDGIQ 113 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G+ V V +G A G + K R + + I G+ E++ + +++ Sbjct: 114 DLASPDFRKGQQVLVEEGLLAGHEG-IWLTSNGKKRAHILLEIMGKQIKTEVNENWLKR 171 >UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH43_DESAA Length = 178 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 13/175 (7%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 K+WY + S E V L E P ++ R +R+ + Sbjct: 8 NTKQWYALYTKSRHEACVNNYLAAR---------SIESFYPQMRILSRRKDRRKMIDVPM 58 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGY+ V+ + + P + IG T I + + ++ Q+ + P Sbjct: 59 FPGYLFVRAALRSRQHLSILKAPGAVTLIGNTRGA-IAIPEDTISSLRIVSQKEALETGP 117 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G++V + GPFA GV + ++ V++ G++ VE+ + V+ Sbjct: 118 --CYHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169 >UniRef50_Q10BA7 Os03g0825500 protein n=3 Tax=Oryza sativa RepID=Q10BA7_ORYSJ Length = 330 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 52/226 (23%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFF 65 +W++V+ S G L +L ++ P+ +V + + G + Sbjct: 104 PQWWLVRV-SMAPGTDYVDLLTKAISRRYPELSFKIYNPSIQVKKRLKNGSISTKSKPLH 162 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-------RPAPISDKEVDAIMNRLQQV 118 PG V + +N +R GFIG T +P PI +EV++I+ ++ Sbjct: 163 PGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEEVESIIREEKEE 222 Query: 119 GD--------------------------------------KPRPK-----TLFEPGEMVR 135 + KP K F PG V Sbjct: 223 QERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVH 282 Query: 136 VNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 V GPF F G + EV+ + + + +++FG+ + V+LDF Q+E Sbjct: 283 VLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 328 >UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonadaceae RepID=A0KGQ9_AERHH Length = 183 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 11/168 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY+ E R L +E + P E+ ++R G+R FP Sbjct: 19 KKWYLAYCKPKEEARARAHLE----AQGIESYY-----PMVEIEKLRRGKRVPVREPMFP 69 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Y+ + + + + + ++S + I + IS + V +M+R + + Sbjct: 70 NYLFIYVDLEEVTPVTLKSTRGISRIIHFGREW-TSISSQLVYQLMSRDDSDEARASYAS 128 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 L G+ V + GP A F + E D +K R + VS+ + T D Sbjct: 129 LPTQGDKVLIESGPLAGFEAIYLEPDGDK-RAILLVSLLNQETSSSFD 175 >UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8INV2_METNO Length = 178 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 22/185 (11%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+VVQ E RV L + +P V +R G++ K F Sbjct: 6 KTWFVVQTGPARERRVVELLARE---------GADTWLPLFRVTTVRRGRKVDDFEKVFA 56 Query: 67 GYVLVQMV---MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ------- 116 YV + M ++ V+ +G DRP P + + +RL Sbjct: 57 SYVFAGLDEETMRRRGTSVLFDCDHVLDVLG--VDRPLPFPADALQVLADRLAGHNRDET 114 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + G + + GEM R+ +GPF F VEEV +K V IFGR TPVE Sbjct: 115 EEGRRRTEAAKIQVGEMRRIINGPFMSFFAEVEEV-LSNGIIKAGVRIFGRITPVEFTPD 173 Query: 177 QVEKA 181 Q++ A Sbjct: 174 QLDAA 178 >UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomonadaceae RepID=Q4K6G2_PSEF5 Length = 239 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 17/172 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+VQ + R +LR P + G+R+ FPGY Sbjct: 84 WYLVQCKPRQDLRAEENLRR---------QGFHCYRPQRGCERVVQGRRQSGTESLFPGY 134 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + + +DASW +RS V + P + ++++ R+ + K Sbjct: 135 LFIALE-HDASWAPLRSTRGVNRLVAFNGQ-PLAVPVSLIESLRQRVTDMDTSLPYK--- 189 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G V + +G FAD + E + R+ + +++ + +EL S + K Sbjct: 190 --GTRVCITEGCFADLEAIFESSIGD-ERVVLLLTLLNQQRRIELPLSSIRK 238 >UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV4_9GAMM Length = 169 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+++Q S EGR +L + P +V ++ G R E FPGY Sbjct: 4 WFLLQTKSKQEGRAVENLER---------QGVKSFCPMIKVEKLSRGSRVVKEEALFPGY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V + S VRS V F+ P + + ++ +M R D+ Sbjct: 55 LFVNFDQSSVSSTTVRSTRGVSHFVTSAG-LPVKVPESLINQLMLRTDAGNDETVSSLP- 112 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 GE +++ DGPF N V + D ++ R V +++ + L F+ + Sbjct: 113 SKGERLQIIDGPFRGLNAVFSQPDGDR-RAIVLINLLNQQVSASLPFASL 161 >UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITB0_ACIBL Length = 182 Score = 99.5 bits (247), Expect = 5e-20, Method: Composition-based stats. Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 16/173 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEE-VVEIRGGQRRKSERKFFP 66 W+ VQ E RVA LR+ E +P V + G + FP Sbjct: 13 HWFAVQTRHRHEKRVAERLRQ---------SEIETFLPIHRAVHRWKNGINAEVNLPLFP 63 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ ++ L+R P V+ I +S+ P PI D E+ + RL K P Sbjct: 64 GYLFTRL-RGSQRIPLLRE-PGVIA-IAASSNSPTPIGDNEIAQL--RLVAESVKAEPHP 118 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ V+V GP G++ E R+ VSV I R+ V++ ++E Sbjct: 119 FLAIGQQVKVVAGPLFGMEGILIRKKSE-YRVVVSVKIIMRSVAVDVSELEIE 170 >UniRef50_A9SPI1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPI1_PHYPA Length = 719 Score = 98.8 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 43/210 (20%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNM-EDLFGEVMVPTEE-VVEIRGGQRRKSERKFFP 66 WY+V E A L HI+ M + EV+ P+ +++ G+ S + +P Sbjct: 119 WYMVSTPKKAEHEAAEQL--HIQFAQMFPGMKYEVLTPSIPSFRKLKSGRYSDSRVRLYP 176 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR--------PAPISDKEVDAIMNRLQQV 118 G +L++ VMN ++++RS R+ F G + P+ +S E++ + ++++ Sbjct: 177 GCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEA 236 Query: 119 GDK-------------------------------PRPKTLFEPGEMVRVNDGPFADFNGV 147 + P P E G ++R+N GPF + G+ Sbjct: 237 EAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGI 296 Query: 148 VEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 V VD+E +++SV IFG++T EL + Sbjct: 297 VNYVDHENETVQLSVVIFGQSTDAELRIDE 326 >UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T084_PSYIN Length = 169 Score = 98.4 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 12/175 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+VV S E R +L P +I +++ E FP Sbjct: 4 QWFVVYCKSREELRAQRNLENQGVYS---------FFPKICKEKILRSKKKVVEEPLFPS 54 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR-PKT 126 Y+ V + ND + +RS + F+ A I D+++ I + Sbjct: 55 YLFVNISKNDEKFSAIRSTRGINNFVKF-GLSIATIPDQQIKKIEQLCHVNNKLAVNSED 113 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +++ G+ + + GPF + ++ R + + I + + S ++K Sbjct: 114 VYQNGDKIEILSGPFKGLTAIFN-IEDGLERSMLLLKILNQDNNISFKNSALKKV 167 >UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 Tax=Nitrobacter winogradskyi Nb-255 RepID=Q3SSD1_NITWN Length = 234 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 26/190 (13%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGG------QRR 58 K W++++ G E +V + ++ + VV G +R Sbjct: 31 QPKYWFILRTHPGCERKVMREFERRNISA-----YCPLIAKQQRVVRRVHGSSWTYEIKR 85 Query: 59 KSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVD-------AI 111 + FP V V + + V G++ R S++E A Sbjct: 86 LVQVPLFPQLVFV-----PDFERVPADIGGVSGWLRFGGWRARIPSEREATSDRVACMAD 140 Query: 112 MNRLQQVGDKPRPK--TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 ++ L + + P+ K FE G +VR+ DGPF DF+G +E +D K RLKV++ IFGR + Sbjct: 141 IHALVAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLD-SKGRLKVAIEIFGRLS 199 Query: 170 PVELDFSQVE 179 P E+ +Q+E Sbjct: 200 PTEMSEAQIE 209 >UniRef50_A4EGG1 Transcriptional antitermination protein, putative n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGG1_9RHOB Length = 172 Score = 96.8 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 12/181 (6%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M++ +K W+V+Q T L ++P EV + R Sbjct: 1 MNDRNEKLGWFVLQLKPNGLSLARTHLAR---------QGFLTLMPLREVSQHARYGLRT 51 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 + FPGY+ + +W + V + GT +PA + ++ + G Sbjct: 52 VRQPLFPGYLFFSVTARQINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDG 111 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V V +GPFA + V D R+++ V + GR T V + +E Sbjct: 112 -MLGDVADLQTGDQVGVVNGPFAGWMAKVVSADTP-DRIQLLVDVMGRETAVNIAGRDLE 169 Query: 180 K 180 K Sbjct: 170 K 170 >UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUS0_CHIPD Length = 174 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 14/173 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV + FE +VA + D E +P + ++ E FP Sbjct: 14 KWYVAYTRANFERKVAKDI---------VDQQIEHYLPLRRETRKWSDRLKQIEVPLFPN 64 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ V++ + + +P V+ + + P +S++E+ I ++++ G + Sbjct: 65 YIFVKIKLQHKVN--ILGIPGVLSLVSFSGQ-PVSVSEREIQHIR-KIEERGQDIALEYY 120 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ VR+ G F G++ + R + + +A VE++ Q+E+ Sbjct: 121 YCVGDRVRITQGIFTGMEGILLR-KSGQMRFVLKLPAISQAVSVEIEGDQLER 172 >UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7D1F8_AGRT5 Length = 188 Score = 96.1 bits (238), Expect = 5e-19, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 23/186 (12%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE--IRGGQRRKSERK 63 K W+VV+ E V +LR+ +V +P E + E +RG R Sbjct: 12 KHEWFVVETKHKAEKAVEDALRK---------AGVKVFLPLETIGETVVRGRIIPAVSRP 62 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 PGYVLV +V + A+ + + V GF+GG P +SD+E++ P Sbjct: 63 LLPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMV-HPHRVSDEEMNRF-KAFGDDETAPD 120 Query: 124 PKT--LFEPGEMVRVNDGPFADFNGVVEE------VDYEK--SRLKVSVSIFGRATPVEL 173 K F+ G+ VR GPFA F G + + VD E+ + V+V +FG+ + +E Sbjct: 121 VKHCEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEA 180 Query: 174 DFSQVE 179 + +E Sbjct: 181 PLALLE 186 >UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacterium RepID=B0UIZ3_METS4 Length = 225 Score = 95.3 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 14/179 (7%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSER 62 AP + W V + + RV L + E EEV + G RR+ Sbjct: 47 APDRVWLVARTRPRWAPRVVRDL------AALGLCAFEA---REEVERVGPDGARRRVAV 97 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFI---GGTSDRPAPISDKEVDAIMNRLQQVG 119 V + + +DA + P V+ + G PAPI DA+ R + Sbjct: 98 PLLHRLVFLGL-RDDADLARAEAHPGVLRVLFREGRAVTIPAPILQAFADALAGRAGEGE 156 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 D+ L G+ VRV GP A G +E VD + R +V++ +FGRAT V+L +V Sbjct: 157 DEAVEAVLLALGDAVRVTRGPLAALRGTIEAVDPARRRYRVALGLFGRATRVDLAAEEV 215 >UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idiomarina RepID=Q5QWY1_IDILO Length = 165 Score = 95.3 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 16/179 (8%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M+E WY+V+ E R + N+E+ V P V ++R G R Sbjct: 1 MNELESDVWYIVRTKPKQEERA---------ILNLENQGFGVFAPELTVKKVRRGVRTSV 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 + FPGYV V+ ++ +RS V G + + P + + +D + + Q+ D Sbjct: 52 VERMFPGYVFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPK-VPQRWIDQMRG-VDQLTD 109 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + P + G+ V + GPF F + ++D E SR V + + + +++ Sbjct: 110 EQAP----QIGDTVEIQQGPFRGFLAKIVKLDGE-SRCFVMLEWMQKEVKANFSYKELQ 163 >UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTI0_CHIPD Length = 174 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +++ + +WYV+ + FE ++ L + D+ +P + V + ++ Sbjct: 7 ITQQRESKWYVLYTYPLFEKKIGRQL-------ALIDIIH--YLPVKTEVRKWSDRLKRM 57 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E FP Y+ V+ + + + + +P V+ F+ R IS+ +++ I +++Q Sbjct: 58 EVPLFPNYIFVKTNLLNKT--PILGIPGVVRFVSVEG-RAIAISEDDINKIR-QIEQSRQ 113 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI--FGRATPVELDFSQV 178 ++++ G+ +R+ +G F+ G E+ +RL+V + + +A VE+ + Sbjct: 114 DVEIESVYNTGDKIRILNGVFSGLEG---ELYKRSNRLRVLIKLPVIAQAVSVEISNCDI 170 Query: 179 EK 180 EK Sbjct: 171 EK 172 >UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiaceae RepID=B4S8Z4_PROA2 Length = 172 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 12/178 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M E WY V S FE +V L+E + +P + +++K Sbjct: 1 MDETGNLCWYAVYVRSRFEKKVHLLLQEKGIVS---------FLPLVDTWRQWSDRKKKV 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 F GYV V++ V V+ FIG + I D++++ I + Sbjct: 52 SMPLFRGYVFVRIHYRQD-HPFVLDTDGVVKFIG-IGRAASVIRDRDIEWIKILTGEPDV 109 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + L PG+ V+V GPF GVV + D +S+L V + V ++ + Sbjct: 110 RKEVLPLLPPGKQVKVIAGPFVGLEGVVRK-DGRESKLVVYFESIMQGIEVTINAEYL 166 >UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AEF0 Length = 175 Score = 94.9 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 14/178 (7%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K+ WY + E +VA L + E +P +EVV +R+K + Sbjct: 3 KENWYAMYVRMHHEKKVAEKL---------GQMGVEHYLPVQEVVRQWSDRRKKLQVVVI 53 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMG-FIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR- 123 P + ++ ++R++P V G I + RPA I D+E+ L + Sbjct: 54 PMMIFIRAS-EQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAVHF 112 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 T PG+ +RV GP A +G + E+D KS++ V + G A+ VE+ VE Sbjct: 113 INTPLAPGQKIRVIKGPLAGLDGELTEID-GKSQVMVRIEQLGYAS-VEMPVGYVEAT 168 >UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteobacteria RepID=D2C1D2_DICD5 Length = 162 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 14/173 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ G R L +D+ + P + +I G+R + FP Y Sbjct: 4 WYLLYCKRGQLLRAKEHLER-------QDVV--CLSPMIALEKIVRGKRTEVSEPLFPNY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V+ + S V F+ + PA + + ++ + + P Sbjct: 55 LFVEFDPEHIHTTTISSTRGVSHFVRF-GNLPALVPQQVIEDLQHHQCTTHVDPETP--- 110 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +PG+ V + +G F+ + E D E R + +++ + +D Q K Sbjct: 111 QPGDQVTITEGVFSGLEAIYTEPDGEA-RSMLLLNLLNKQVRQSIDNRQFRKV 162 >UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XR75_9FLAO Length = 158 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 16/173 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ E +VA++L + L +V PT E V + +++K + F Sbjct: 2 NWYVLYVKPQSEKKVASALEK---------LGVKVFCPTLEEVRVWSDRKKKIQVPLFKS 52 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV V + + V +VP V+ ++ +PA + D+E+ AI + L Sbjct: 53 YVFV--CLPNTERQQVFAVPGVVRYL-FWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRT 109 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + PG V++ G F G+V+EV + RLK+ + G VE + K Sbjct: 110 YTPGTEVKIAAGHFKGQKGIVQEV--GRKRLKMVIKSLG--VIVEARLKDLVK 158 >UniRef50_Q73PT3 Transcription antitermination protein, NusG family n=1 Tax=Treponema denticola RepID=Q73PT3_TREDE Length = 175 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 5/173 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 +YVVQ +G E + + + ++L ++ P + + G+ + + F GY Sbjct: 3 YYVVQVSTGKE---KNFIEDAEFKNKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFAGY 59 Query: 69 VLVQMV-MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 + + ++ + +R F+ + P + ++ + + + G + + Sbjct: 60 LFIGTDEISKDLYQHLRKCKGFYRFLPNNQE-PKFLEGRDFEILNQFISFGGLAKISQVV 118 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ + ++V +GP + G + V+ K R V + + A ++L F + K Sbjct: 119 FDENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171 >UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGB9_CHIPD Length = 185 Score = 92.6 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 12/158 (7%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E WY V +E +VA +L E P V +++ E Sbjct: 2 EQKTHTWYAVYTKPRWEKKVADALVRKQ---------IETYCPINRVTHQWSDRKKIVEE 52 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 F YV V+ + + LVR ++ F+ +PA I D EV+ I L++ D Sbjct: 53 PLFKSYVFVR--IPEDKKTLVRETSGIVNFV-YWLGKPASIPDHEVELIKRFLREYQDVQ 109 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV 160 + + +++R+ GP +G V E + + Sbjct: 110 VERFPIQEDDLIRITAGPLMHQHGRVVEAGKNTVKAVL 147 >UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWJ1_METI4 Length = 185 Score = 92.6 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + E +L++ EV P + +IR + FPGY Sbjct: 11 WYCLSIQPKKEKLAVENLKKEN---------IEVFFPQFQYQKIRSRKTSLVLEPLFPGY 61 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + + VRS V + S P I D ++ + + + G K + Sbjct: 62 LFAKFNLYSKL-TFVRSTKGVRKVVHFGSSYPV-IPDSFIEELRIQFGEEGIK-TIRERI 118 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G + + +GPF ++ +V K R++V + GRA +E++ ++ Sbjct: 119 DVGSTINIAEGPFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168 >UniRef50_B6GA74 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA74_9ACTN Length = 192 Score = 92.6 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 5/173 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+Q G E +A+ + + L EV P E G+ ++ PG Sbjct: 4 QWYVIQVMKGREDSMASLIGRVVPKS----LLQEVFSPKYETEIKVRGRWVPVQKTLLPG 59 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y++ + ++R +P + + P++ EV+ I + Sbjct: 60 YLIAVTNDPEGLEAVLRDLPEFARLL-AQGNEFVPLAPAEVEVIGSFTSPGKRVVPMSIG 118 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V V GP +V+E+ KS + V++ GR + + K Sbjct: 119 VKDGDRVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171 >UniRef50_Q2CAE9 Transcriptional antitermination protein, putative n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CAE9_9RHOB Length = 162 Score = 92.6 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 2/153 (1%) Query: 29 HIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPR 88 + N+ V P ++ GQ R + FPGY+ V + Sbjct: 10 RLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMRAASYTRG 69 Query: 89 VMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL-FEPGEMVRVNDGPFADFNGV 147 V + P + D ++ + R G P+ + G+ V V DGP A Sbjct: 70 VARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGPLAGQVSR 129 Query: 148 VEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + + E R+ + + + GR T V + V + Sbjct: 130 IIALAPEA-RIWLLLDLMGRQTRVAVKREAVRR 161 >UniRef50_B5YJ95 Transcription termination factor NusG domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ95_THEYD Length = 169 Score = 92.2 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 11/173 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 WY + S E +V L + E +P E + +++ + FP Sbjct: 6 FNWYCIYVKSRHEFKVFDRLTK---------AGIEAFLPAVERLRRWKDRKKLIKFPLFP 56 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ V + + V P V+ FI S P PI ++E+ + + + G + P Sbjct: 57 GYLFVCIEKSYELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAI-ENGREIDPYP 115 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V++ GP A G++++ ++ +S+ I RA V++D S+VE Sbjct: 116 YLKEGQRVKIKSGPLAGATGILKK-KEKQHFFIISIHILQRAVSVKIDASEVE 167 >UniRef50_A5FN19 Transcription antitermination protein nusG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN19_FLAJ1 Length = 154 Score = 92.2 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 12/154 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +E +VA L + + E P V+ +++K E F Sbjct: 2 NWYVVYTKPKWEKKVAEKLTQ---------IGIECYCPLITQVKQWSDRKKKVEMPLFNS 52 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV +Q+ DA + V V ++ ++ +PA + D+E++ I N L+ + Sbjct: 53 YVFIQIE--DADRNSVFEVAGIVRYL-FWLGKPAVVRDEEINVIKNSLKASNIADISVSQ 109 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 + G+ +++ G F++ N +V+EV L + Sbjct: 110 IQVGDKIKLETGAFSNQNAIVQEVSKTHYILVLE 143 >UniRef50_B8IEU5 Putative uncharacterized protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IEU5_METNO Length = 171 Score = 91.1 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 17/182 (9%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M E+ + W++V+ GR +L+E +VP V R G+ Sbjct: 1 MDES--RTWHLVRTAPSMMGRALDTLKE---------QGIPTVVPRTVAVGHREGRPYLR 49 Query: 61 ERKFFPGYVLVQMV---MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 + F V V + D R V RV+ P IS ++ A + + Sbjct: 50 RAQMFHRTVFVGVEGAADLDGKVPTARGVTRVLRNPTRADMAPMTISGPDMAAFVAAIG- 108 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + +K +P G+ V V GPFA F +VEEV RLKV+V IFGRATP E + Sbjct: 109 ITEKRKP-AGIAAGDRVVVQAGPFASFPAMVEEVLP-NERLKVAVQIFGRATPFECGHAD 166 Query: 178 VE 179 V Sbjct: 167 VR 168 >UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium RepID=B8I511_CLOCE Length = 188 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 75/182 (41%), Gaps = 18/182 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ SG E RV L++ + + D+ +P E + G ++ + FPG Sbjct: 16 HWYVLFVKSGREHRVEQYLKKIVGI----DMINP-FIPLHEFLFKISGTVKRELKPLFPG 70 Query: 68 YVLVQMVMNDASW--------HLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 YV ++ M + +L+ + R++ + SD + D E +++ Sbjct: 71 YVFIESDMAGQEFIRKLYNKIYLLSDIVRILKY----SDTEIAVRDSEKQMLLDLCNNEH 126 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + + + G+ + + +GP ++++V+ K + V + G V + VE Sbjct: 127 CIESSRGVIK-GDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVE 185 Query: 180 KA 181 K Sbjct: 186 KV 187 >UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBP8_9FIRM Length = 171 Score = 90.3 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 15/178 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ G E ++ +P +VV + G E+ FPG Sbjct: 2 NWYVLFVRGGMEEKIRDFFLS---------QGLNAFIPKMKVVFRKQGISELVEKIMFPG 52 Query: 68 YVLVQMVMNDASWHL-VRSVP----RVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 Y+ ++ + A+ ++ + ++ + P E + RL Sbjct: 53 YLFIESELEQAAMDEQIKELRMQKTGIVKLLKF-DKEGTPALRSEEKDYLERLLGKNKVL 111 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 T G V + +GP F + ++D K R + + + G+ V + V+K Sbjct: 112 EHSTGLIQGNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQK 169 >UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI35_DESAH Length = 174 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 12/177 (6%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + +K WY + S FE V +++ EV +P + R ++ + Sbjct: 2 SQEKSWYTLLTKSRFENVVFNDIQKK---------SIEVFLPKIKKRSQRKDRKLMIDVP 52 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGY+ V + ++ + V + +G +S P P+ ++++ D Sbjct: 53 LFPGYLFVNITLDPVTHLSVVKTTGAVRLLGYSSG-PVPVPSAHIESLKIVTGTGLDVVS 111 Query: 124 PKT-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + GE V V GPF+ G K R+ + + G+ VE+D +E Sbjct: 112 GTINTLQKGERVLVVRGPFSGVKGEFLR-HKGKDRVIIKIETLGQFAGVEIDREDLE 167 >UniRef50_Q7NAK3 NusG n=2 Tax=Mycoplasma gallisepticum RepID=Q7NAK3_MYCGA Length = 268 Score = 89.9 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 87/265 (32%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV---------------P 45 MS+ +WY+ +G E V +L+ ++ + ED + V P Sbjct: 2 MSKKSTAQWYIATTTNGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNNP 61 Query: 46 TEEV------------VEIRGG---QRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVM 90 T + V + G + + ++ +PGY+ ++M MN+A+W VR+ + Sbjct: 62 THNIPATMRNSTYIKWVTVDNGVYKKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNIT 121 Query: 91 GFIG--GTSDRPAPISDKEVDAIM------------------------------------ 112 G +G G +P PIS E ++ Sbjct: 122 GIVGSSGKGAKPIPISSSEELDLLNGESFDQNYRIVITPNAIIEMDRNLFNERGELILDE 181 Query: 113 NRLQQVGDKPRPKTLFEPGE------------------MVRVNDGPFADFNGVVEEVDYE 154 N + + K + + + G+ MV +N G ++ +G + + + Sbjct: 182 NAAKTIVHKKKSDSADKYGDMSTEKEQVDEAIELKVGHMVDINSGDYSGLSGQISRI-ID 240 Query: 155 KSRLKVSVSIFGRATPVELDFSQVE 179 V V I G+ V+L+ Q++ Sbjct: 241 NDEYIVDVQILGKLVSVKLNKKQLK 265 >UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UA20_SINMW Length = 219 Score = 89.5 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK--SERK 63 K W+ ++ ++G E V SL +VP + ++R R Sbjct: 49 KAPWFALRVWTGREKTVEKSLDIMA---------VRSLVPMRKGPDLRRRGRVIEGQMMP 99 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI--MNRLQQVGDK 121 GYVLVQM+ + V V+ +GG +RP +SDKEV+ + R + Sbjct: 100 VIHGYVLVQMMALSEYLAGLLGVEHVIDVLGGC-ERPMRLSDKEVNRFNGLARNGNFDWE 158 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVE-EVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + GE V + GPF D V + + VS+ G PV + + ++K Sbjct: 159 RPVDLVVRAGEPVLITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALLKK 218 >UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1 Tax=Sinorhizobium saheli RepID=D1CTG7_SINSA Length = 129 Score = 89.5 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 54 GGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN 113 Q R +F Y+ V + + W + S V + P P+ V++++ Sbjct: 4 RAQHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSEHA-PLPVPHGVVESLLA 62 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 G PK L EPG+ +RV +GPF D G ++ V +++ + I RA P+ + Sbjct: 63 ATDDEGF-LHPKELLEPGQKIRVTNGPFTDQLGTLDYV-GRSGAVRILIDIMNRAVPIYI 120 Query: 174 D 174 D Sbjct: 121 D 121 >UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QI43_9RHIZ Length = 175 Score = 89.5 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W VV A + E A++L++ E+ P R+S FPGY Sbjct: 15 WVVVNAQAHREFVAASNLKK---------QGYEIYAPVIRKTTRHARISRESLTPLFPGY 65 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + D W + S + + + P+ + VDA+ R ++ G R ++ Sbjct: 66 LFARWTAPDMRWRPILSTVGIRSIVRN-GNEPSRLDGAIVDALKAR-EKDGVIVRAESQR 123 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 E G++VR GPF + E+ +K RL V +++ R T V + Q+ Sbjct: 124 EIGQIVRFARGPFDGIAAEIVELC-DKDRLVVLMTLLNRPTKVTVLEDQL 172 >UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174528A Length = 158 Score = 89.1 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Query: 41 EVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP 100 E P + FP Y + V + + V+ V+ +G D P Sbjct: 8 ETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYS-EAHRAVKHTHNVIRIVGFGGD-P 65 Query: 101 APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV 160 API D ++ + + Q + K E G+ V V +GP GVVE + + R+K+ Sbjct: 66 APIPDLTIENLREEM-QGAELREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKL 124 Query: 161 SVSIFGRATPVELDFSQV--EKA 181 + GR + VE+ S++ EKA Sbjct: 125 LLEFLGRQSLVEVQASKLLSEKA 147 >UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XAW5_9BACT Length = 205 Score = 88.7 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 11/173 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + WY V++ E A +L + E P+ + F Sbjct: 31 EPAWYCVRSKPKHEHIAAANLSKL--------QVVETFNPSLRSRKATRRGPVWMTESLF 82 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P Y+ + + + V+ V + + P + ++ + K + Sbjct: 83 PNYIFARFPF-EQMFDEVKYTRGVSSLVHFGTGYPE-VPADVIEELRRNFPANELKLSSE 140 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G+ V + GVV + R++V + + G+ + VEL+ + V Sbjct: 141 VP-TAGDQVTITSRALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192 >UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0K9_PEDHD Length = 168 Score = 88.7 bits (219), Expect = 8e-17, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 15/178 (8%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 +K WYVV + E + +L + +P ++V +++ E Sbjct: 5 QQEKNWYVVVTYPNLERKALLNLLK---------NNFIAFLPLQKVQRKWSDRKKTIEIP 55 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FP Y+ + +N+ + V ++ RPA IS+ ++ I ++ V Sbjct: 56 LFPNYLFIN--INEKDRFEALDIYGVKRYVTF-GGRPAFISETDILNIKRIVESVDLYIE 112 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ V++ GPF D G++ + ++R + V + +E+ + + K Sbjct: 113 HSLV--KGDAVKIIGGPFKDMIGILFK-KSGQARFGIRVESMNQTLSIEICHTLIRKV 167 >UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus RepID=Q1D5E3_MYXXD Length = 168 Score = 88.7 bits (219), Expect = 8e-17, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W + E A L +H E +PT + G + + FPGY Sbjct: 11 WVALLVRVNHEKVAAAQLGKH---------GYEFFLPTYTPPKSSGVKAKL---PLFPGY 58 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + + + +VR+ P V+ +GG + P + +E++AI R+ G P Sbjct: 59 LFCRYQPLNP-YRIVRA-PGVIRLLGGDAG-PEAVPAQELEAIR-RVADSGVSSNPCDYL 114 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ VR+ +GP G + + R VSV + R+ VE+ Q+E Sbjct: 115 RVGQRVRIIEGPLTGLEGSLV-TSKSQLRFIVSVGLLQRSVSVEVSAEQLE 164 >UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanella RepID=B1KMD8_SHEWM Length = 179 Score = 88.4 bits (218), Expect = 9e-17, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 23/185 (12%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K WY++ E R +L L N+ + +PT + G+ FP Sbjct: 4 KAWYLLYCKPRGEARAVHNL----TLQNI-----DTYLPTIGEEKRVKGEVSIKRIPLFP 54 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP-- 124 GY+ + + S + S V +G ++ I D + +I R ++ + P Sbjct: 55 GYLFINIDPQVTSVARIHSTRGVGRIVG-CNELMTSIDDSIIHSIRLREHKLLSELLPAS 113 Query: 125 ----------KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 PG+ V+ +GPFAD G+ E +K R V I G+ V + Sbjct: 114 ELSQKCDGSSTVEINPGDQVKFTEGPFADLEGIFAEKSGDK-RCHVLFEIMGQKKRVSVP 172 Query: 175 FSQVE 179 ++ Sbjct: 173 RDSIK 177 >UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01XJ6_SOLUE Length = 179 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 16/169 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+ V+ S FE + A LRE + P+ + + ++ FPGY Sbjct: 20 WFAVKVRSNFEKKSADILREK---------GYQEFAPSYPSRRYWSDRVKVIDQPLFPGY 70 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V + N + V V+ +G + AP+ + E+ ++ + P + F Sbjct: 71 VFCRFHPN--HFLPVLQTAGVVQIVGF-GGKLAPVDEVELASLRTLMNS--SLPISQREF 125 Query: 129 -EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 G V + GP A G++EE+ + R+ VS+S+ R+ E+D + Sbjct: 126 LHVGRKVLIRRGPLAGVEGILEEI-RKGYRIVVSISLLQRSVTAEIDAN 173 >UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=Moritella sp. PE36 RepID=A6FES1_9GAMM Length = 174 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 11/174 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 KK WY++ E R +L+ E PT V + + E F Sbjct: 5 KKDWYLLYCKGKEEPRALINLKN---------QGIESFYPTMTVEKKLRNKLICQEIAIF 55 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P Y+ V + N A+++ +RS V+ F+ ++ + V + + Sbjct: 56 PNYLFVAIDKNTANFNSIRSTRGVIDFVKCGANY-TKVPAALVTELRATQRCRDKSANEV 114 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 T+F GE V + DG F + + D R + +++ +T + + +++ Sbjct: 115 TVFSEGETVIIQDGAFKGIEAIYQCKD-GLERSMLLINLINHSTTMSVANGEIK 167 >UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VS68_POLNA Length = 184 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 61/178 (34%), Gaps = 13/178 (7%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S + W++ E + L N++ +V +P + ++ + Sbjct: 16 STDSESLWFLAHTRPRLE---------TVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVF 66 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 F YV + S VRS V + A I +DAI Q Sbjct: 67 EPMFSRYVFFRTTSLAQSIAPVRSTRGVAQIVSF-GSEFATIRPDMLDAIRQLEQLRNAA 125 Query: 122 PRPKT-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + PG +VR + + GVV+ V R+ V + I GR V +D Q+ Sbjct: 126 DVAELSTLRPGHLVRFCNSALSGLEGVVKSV--SSCRVAVLLEIMGRQQLVRVDHHQL 181 >UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAS1_RHISN Length = 169 Score = 87.6 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 16/178 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR--GGQRRKSERKFF 65 WYVV+ +G + + ED V P + E F Sbjct: 3 HWYVVRTRAGQQQKA---------TREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLF 53 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ--QVGDKPR 123 GYV + ++D + +R + V+ + P P++ V+ I + + Sbjct: 54 TGYVFAYLRISD--FGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRP 111 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P + G+ V+V DGP V + + +K V IFG VE+ + + Sbjct: 112 PVRRLKAGDTVQVKDGPLTGHYAAVTNI-VGRRAIKAFVEIFGSLREVEIGLESIRRV 168 >UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterobacteriaceae RepID=RFAH_ECO57 Length = 162 Score = 86.8 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ G R L + P + +I G+R FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V+ + + V F+ PA + + + + + D P T + Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQL--SVYKPKDIVDPATPY 111 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 PG+ V + +G F F + E D E R + +++ + Sbjct: 112 -PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKE 149 >UniRef50_Q8EUN7 Transcription antitermination factor n=1 Tax=Mycoplasma penetrans RepID=Q8EUN7_MYCPE Length = 348 Score = 85.7 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 30/143 (20%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI---------- 52 + + +WY+V + +G E V ++ + ++ +++ ++ E+ + + I Sbjct: 14 KKDEAKWYIVTSINGNEDTVYKNIEDKVRAYDLGNVVQEMRLLKTREITIEVFDPINNPP 73 Query: 53 ------------------RGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG 94 R + R E FPGY+ ++M+M D +W+++R+ V GF+G Sbjct: 74 PSRFRNTKSITWETLPGGRYKKTRIREINRFPGYIYIKMIMEDDAWYVIRNTFGVTGFVG 133 Query: 95 --GTSDRPAPISDKEVDAIMNRL 115 G +P P+SD EV + N Sbjct: 134 SSGKGAKPIPMSDIEVANLFNPE 156 Score = 59.9 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 G+ LF G V + + GV+E +D EK + KV V I G+ T V++ FS+ Sbjct: 284 KGNSDSKSPLFAVGNTVEILVESMQGYEGVIESIDLEKDKAKVLVDILGKETIVDVHFSE 343 Query: 178 VEK 180 + K Sbjct: 344 IRK 346 >UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromonadales RepID=A0XZ39_9GAMM Length = 161 Score = 84.9 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 68/172 (39%), Gaps = 17/172 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+V E R +L + E P ++ +R + FP Y Sbjct: 4 WYLVICKPRQEERAKANL---------NNQGIEAFYPILTTEKLVKSRRTVKQVALFPNY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIG-GTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 + V + + + V++ + GF+ G + + P+ AI+ L L Sbjct: 55 LFVCLDSKNGPFAAVKNTRGIGGFVTYGANYQVVPL------AIIEHLNNHTSNTVESQL 108 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V V++ F + + + +E D + R + +++ + + +D + +E Sbjct: 109 PKQGDAVSVSNHSFKNIDAIYKEPDGD-MRSILLINLLNKQVEMSVDNTDIE 159 >UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira RepID=Q04WD1_LEPBJ Length = 179 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 15/182 (8%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M E K WY + E ++ L+E E +P + + + Sbjct: 1 MIENSKVNEWYALYTNPRAEKKLKRLLQER---------KIECFLPLISKKKKWSDRWKV 51 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 E +P Y+ V++ + +P F+ S +P I D++++ I L+ Sbjct: 52 VEEPMYPSYIFVKISFFQDRV-KILQLPGAHHFV-FYSGKPYVIPDEDLNLIRIFLETYP 109 Query: 120 DKPRPKTLFE--PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 D+ + + PG+ + + +GPFA F + + EK + V T V LD Sbjct: 110 DRIQVEIQERLLPGKKILIQEGPFAGFKAEIIQRKNEKQ-IIVKFPGMNLMTSVTLDIKT 168 Query: 178 VE 179 ++ Sbjct: 169 LK 170 >UniRef50_D1PRH1 Putative transcription termination factor NusG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRH1_9FIRM Length = 185 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 14/171 (8%) Query: 10 YVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYV 69 YV+Q +G E + LR+ P RGG+ ++ +P Y+ Sbjct: 4 YVLQVITGREKDICGRLRK---------AGIPAYCPRAVRQIRRGGRWQEQTYTLYPAYI 54 Query: 70 LVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFE 129 VQ ++ VR V+ ++G T P P+S E I+ L G +P K + Sbjct: 55 FVQCERVVDVYYAVRREDGVLYWLGATRGTPEPLSADEEANIL-WLAGDGPQPVSKAVCR 113 Query: 130 PGEMVRVNDGPFA---DFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + GP + + V + R + + G+ + L F Sbjct: 114 ADGSLDFTSGPLKRLAELEA-LRSVFRRERRATAVLPLHGKEHKINLSFEI 163 >UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3I2H8_9SPHI Length = 170 Score = 84.1 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + +W+V+ S E +VA LRE+ K EV +P E + +++K E+ Sbjct: 2 NELKWFVMYTASRSEKKVAKRLRENGK---------EVYLPIIEEIRQWSDRKKKVEKPL 52 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 F GYV V+ N W ++ VP + F+ + A + D+E++ I + Sbjct: 53 FNGYVFVKTTRN-QLWECLQ-VPGAVKFVHFSGQH-ATVRDEELETIERIISTGVAVESD 109 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEE 150 ++ E GE V V G G V E Sbjct: 110 GSVIEAGEKVEVIGGALQHMTGEVIE 135 >UniRef50_Q94AA3 AT3g09210/F3L24_8 n=6 Tax=rosids RepID=Q94AA3_ARATH Length = 333 Score = 84.1 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 66/238 (27%) Query: 4 APKKRWYVVQA--FSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEV-VEIRGGQRRKS 60 +W+ V+ G E + ++ V P+ +V +++ G Sbjct: 93 ESGPQWWAVRVSRLRGHE---TAQILARALARQFPEMEFTVYAPSVQVKRKLKNGSISVK 149 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGF----IGGTSD-----RPAPISDKE-VDA 110 + FPG + ++ ++N +R V V GF +G T RP SD E + Sbjct: 150 PKPVFPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFK 209 Query: 111 IMNRLQQVGD----------------------------------KPRPK----------- 125 Q+ D + +PK Sbjct: 210 QAKEAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATE 269 Query: 126 -----TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G VRV G FA+F G +++++ + ++ V ++FG+ T VE+D +++ Sbjct: 270 TKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINEL 327 >UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVK8_PEDHD Length = 176 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 12/152 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY V S E + +L E +P + + +++ E Sbjct: 11 KKWYPVYTQSRAEKKAYQALLSK---------GIEAYLPLQRQLRQWSDRKKWVEEPLIK 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Y+ V + + L+ + FI + + A + D++++ + L + + Sbjct: 62 SYLFVHIARQQQTEVLM--TTGISRFIYFSG-KIAAMPDRQIEELKLLLASPYELEITEE 118 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRL 158 PGE + + GP G + E +K L Sbjct: 119 RLLPGEKIEIKAGPLKGIRGEIIEYRSQKQLL 150 >UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKV1_ACIBL Length = 194 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 16/166 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTE-EVVEIRGGQRRKSERKFFPG 67 W + + E +VA L E +P E + Q FPG Sbjct: 27 WSALFTYPRHEKKVAEQLLCR---------GVESFLPLYAEKRTWKNRQTVTLTLPLFPG 77 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV + D V S+P V+ + + ISD ++ + ++ +P + + Sbjct: 78 YVFARFARRDRVR--VMSLPGVVSIVERAGAV-SSISDHYIEKLRAGIRLGRVRPFREAI 134 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 G+ V++ GP + GV+ + R+ VS+ + G++ +E+ Sbjct: 135 L--GDRVQITSGPLSGLEGVLMHF-RSEFRVVVSIGMIGQSVSIEV 177 >UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp. At-9b RepID=C8QDS8_9ENTR Length = 170 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 15/169 (8%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 + WYV Q E R L V EV GG RR +E+ FP Sbjct: 2 ENWYVAQTKYAQEKRAQQQLLSQGVT-----CLFPVFS---EVRLQNGGIRRIAEQPLFP 53 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Y+ V+ +++ V I P+ + D +++ RL Q ++ T Sbjct: 54 NYIFVRFDPEVVHTTAIKATRGVSSLISF-GGLPSVVPD----SVIIRLNQGWERAPLNT 108 Query: 127 LFEP-GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 G+ V + DG F V E D K R + +++ R V ++ Sbjct: 109 DAPVHGDRVVIRDGAFEGLEAVWYEPDGLK-RAMLLLTLMNREVRVPVE 156 >UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRM3_9BACT Length = 169 Score = 82.6 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 11/173 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + E + + D P EV ++R G+ FP Y Sbjct: 6 WYCLYTKPRQEN---------LTAQSALDAGFPTFNPKIEVRKVRRGKATYVHAALFPSY 56 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V +Q N+ + R + V IG D + + ++ + Sbjct: 57 VFIQA--NEGNLDKARYLRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDMHEL 114 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ V+V DGP + ++ + R V +F +++ + K+ Sbjct: 115 KDGDKVQVLDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIEDLIKS 167 >UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC5_SOLUE Length = 193 Score = 82.2 bits (202), Expect = 7e-15, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 14/167 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+ + + L +E E P + R Q + FPG Sbjct: 18 QWFALSVTPK---------LTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPG 68 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV ++ + LV P V G +G +PAP+ D E+ A+ +Q + Sbjct: 69 YVFARIDVRFRLPVLV--TPGVRGIVG-YGRQPAPVDDGEIFALRRVMQS-QLPAKSAPY 124 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 G+ V++ +GP + G++ + +R+ V V++ +A V+++ Sbjct: 125 LRTGDRVQLVEGPLSGLTGLLIQ-QKGANRVLVQVTLINQALAVDVE 170 >UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QI92_9SPHI Length = 161 Score = 81.0 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ E +A L E EV P + + E FP Y Sbjct: 3 WYVLCTKPRKEKFLAKLLAEKQ---------IEVYCPLIRRKRRWSDRIKTVEEPLFPCY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V + ++ + V P ++ ++ +PA + DKE+D I L Q F Sbjct: 54 CFVNVKESERADVFV--TPGIVRYL-YWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESF 110 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 P + V +N G F G V + +KV + + Sbjct: 111 NPKDKVVINSGSFMGQGGTV----VNQQGIKVLIHL 142 >UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PT75_CHIPD Length = 174 Score = 80.3 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ E RVA M D ++ +P V + + E FP Y Sbjct: 8 WYLLYTRPRQEARVAK---------EMADKNIQIYLPYTTVTRRWTDRIKVLEVPLFPSY 58 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V V + ++ ++ ++ + A +SD VDA+ + + F Sbjct: 59 VFVHLTNMHEFYYG-SNLESACSYVRF-GNEVARVSDAAVDAVRTIAKAGNNLEVSSERF 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 PG+ + + +GP N V + K ++ V V + R+ ++ S + Sbjct: 117 TPGQQMMIKEGPLCGLNCEVIQY-KGKDKILVRVHMLQRSIMADMPASVL 165 >UniRef50_A9NQH7 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9NQH7_PICSI Length = 379 Score = 79.9 bits (196), Expect = 4e-14, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 9/130 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEE-VVEIRGGQRRKSERKFFP 66 +W+++ E VA L + D+ + +P +++ G +S+++ FP Sbjct: 80 QWWMLLVPRNSERLVAEDLSKAFPSE-FPDIEFQAYLPEIPSRRKLKNGSYSESKKRMFP 138 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-------RPAPISDKEVDAIMNRLQQVG 119 GY+ ++ +N +R+ PRV GF+G +P P+ E++ ++++ Sbjct: 139 GYLFIRCPLNKEIHDFIRNTPRVRGFVGRKVGSMIRQMIKPKPVPIAEMEETFRKVKEEQ 198 Query: 120 DKPRPKTLFE 129 + + E Sbjct: 199 EAYDIEIQEE 208 Score = 45.2 bits (106), Expect = 9e-04, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 25/46 (54%) Query: 130 PGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 G VRV G F +F G ++E+D + + K+ + + G PV ++ Sbjct: 309 AGSPVRVISGAFTEFTGHLKEIDADAGKAKLMLMMSGHELPVNMEI 354 >UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IE36_METNO Length = 196 Score = 79.1 bits (194), Expect = 6e-14, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 14/169 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEE-VVEIRGGQRRKSERKFFPG 67 +Y E R L++ + P VV +R R FPG Sbjct: 36 YYAASVAGHGEYRACEWLQQ---------AGFATLAPGRTAVVRQASSGKRLVRRPVFPG 86 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y V + SW + VP V + T + P + + ++ ++G RP+ Sbjct: 87 YAFVG-KRPEQSWRDILRVPGVRALVT-TGEAPTELPPW-MMKMLIAADEMGAYDRPRPQ 143 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 G+ VR+ D + G V E R+ V + FG+ + +D Sbjct: 144 LAVGDKVRIRDELWQGLIGEVMRA-PEGRRIAVLLKAFGKKHVLSVDVD 191 >UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ3_9BACE Length = 171 Score = 79.1 bits (194), Expect = 7e-14, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 14/182 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M + WY E + A L +H +P +EV+ +++K Sbjct: 1 MEAKKETHWYAFYVRMHHEKKTAEKLEMLKVVH---------FLPIQEVIRQWSDRKKKI 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMG-FIGGTSDRPAPISDKEVDAIMNRLQQVG 119 ++ P + + L++++P + G I + RPA I ++E++ L Sbjct: 52 KQVVIPMLIFICTD-EKGRIELLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSD 110 Query: 120 DKPRPKTL-FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + R ++ PGE V V G G + E+ + S++ + + G AT VE+ V Sbjct: 111 ETIRFQSEPLAPGEKVEVIKGSLKGLQGELVEL-EDHSQVMIRIEHLGYAT-VEIPVGYV 168 Query: 179 EK 180 +K Sbjct: 169 KK 170 >UniRef50_UPI00016B21AA transcription antitermination factor n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21AA Length = 75 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 ++P+ + FE GE+V V DGPF F+G + E+D K ++KV VS+FGR TPVELD QV+ Sbjct: 14 EEPKHQIDFEEGEVVSVIDGPFKGFDGTISEIDTVKGKIKVMVSMFGRDTPVELDALQVK 73 Query: 180 K 180 K Sbjct: 74 K 74 >UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5F6 Length = 176 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 14/172 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ + EGR L + + P + ++ G+R+ E FP Y Sbjct: 17 WYLLYCKAKEEGRAVMHL---------ANQGIDAFYPKANITKVLRGKRQTVEEALFPNY 67 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V Q+ + ++ VRS V+GF+ D +S +D +Q L Sbjct: 68 VFAQLDHDVHNFTSVRSTRGVIGFVKQGKDY-QKVSQALIDVF---VQCDTVDKLDSALP 123 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G+ V + + + + +E E R + + + + + +D SQ K Sbjct: 124 TKGDNVMLQHPQYQNIPAIYQEPKGEN-RAILLIHLLNKPVELVVDNSQFTK 174 >UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AFP3_9PORP Length = 180 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 19/171 (11%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A K WYV+ E +V R+ I +E +P + + + E Sbjct: 20 ADKTSWYVLYTAPRAEKQV----RDRINALGVE-----CWLPLHRAPRVWSDRVKIVELP 70 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 F Y+ V+ D + V V + +PA + KE+DAI + L Q + Sbjct: 71 LFNSYLFVRC--TDPELRNLTRVYGVARIVYYNG-KPAVVRQKEIDAIQDFLDQASE--- 124 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 PGE V + G +G V+++ +K+ L + + G V+LD Sbjct: 125 --HALCPGEEVEILCGAMKHVSGKVKKI--KKNHLVLYLEQLGATVCVKLD 171 >UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PS65_CHIPD Length = 170 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 12/160 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + E + L + N+ +P ++ +++ E FP Y Sbjct: 8 WYALYTMPRHEKK----LHTRLSELNVTS-----FLPMTRMLRTWHDRKKYVEMPLFPSY 58 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V + N ++ V + + ++ T + + IS++ + I +Q F Sbjct: 59 IFVYLN-NIEHYYNVLNTNGALYYV-KTGNELSRISEQIIHYIRIVSEQSTGIELSADYF 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 PG+ + ++ GP A F+ V ++ V VS+ R+ Sbjct: 117 PPGKELLISSGPLAGFSCEVVSY-KNSEKILVRVSLLQRS 155 >UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJZ0_RHOVA Length = 169 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 12/174 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M +W V+ E +L P + + Sbjct: 1 MLLPVNSKWVVLTTHPHRENFAVENLAR---------QDFTAYCPMTVKHVRHARRAYDA 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 R FPGYV V+ + V + D PA + ++++ R + G Sbjct: 52 PRPLFPGYVFVEHQSAFQYLRPILGTYGVRSIL-RIGDSPAVLPVGFIESLKAR-EMDGV 109 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 +P+ + G+ V ++ GPF G + E E+ R+ + + + + T V+++ Sbjct: 110 ISKPEAPLKAGQTVTISGGPFDGLVGQILEF-RERDRVLLLLDLLNQQTRVQVE 162 >UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 Tax=Agrobacterium vitis S4 RepID=B9JXL7_AGRVS Length = 220 Score = 76.8 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 23/183 (12%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR--KSERK 63 + RW V + SG E + +L + + P E ++ ER Sbjct: 49 QARWVVARCKSGLEQVIRDAL---------AEQGIDCWCPCERRRLPPRRRKPALVVERP 99 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI--------MNRL 115 F GY+ V+++ ++ ++ + R+ +G +P + + + + + Sbjct: 100 LFRGYLFVRVIPDNEAYAGLLLASRLQSLMG-QDGKPYLMPETLMRQLQLSAKAAERRHM 158 Query: 116 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 P P L G+ V + GPFADF V +V ++ ++ V V +FG + V + Sbjct: 159 DAGDVPPMPDML---GKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTVGV 215 Query: 176 SQV 178 + Sbjct: 216 EAI 218 >UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9ECY4_9FLAO Length = 188 Score = 76.0 bits (186), Expect = 6e-13, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 76/178 (42%), Gaps = 15/178 (8%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVP-TEEVVEIRGGQRRKSER 62 + + W+V+ E + +E EV +P T+ + + Q++ + Sbjct: 24 SKNRNWFVLYTAPRAEKKAK---------LELEYRGYEVFLPMTKSLRIWKNRQKKLIDS 74 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FP Y+ V+ + + + ++ +I +P +S + ++AI + + + Sbjct: 75 VLFPSYIFVKTD--ERYLAEICRINKIATYI-HCGGKPCKVSPECIEAIKC-MLSMDQEI 130 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE VR+ +GP A +NGV+ + K++ + + + +E+ S +EK Sbjct: 131 SVGNDFIEGESVRIVEGPLAGYNGVLVQ-QKSKTKFGIHLKEINQVASIEICTSALEK 187 >UniRef50_UPI0001972DAA NusG antitermination factor n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972DAA Length = 176 Score = 75.3 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 9/164 (5%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q +G E +A +R ++ L+G E+++ GG+ FP Y Sbjct: 2 WYVIQTTTGKEEELAGIVRRNVSHA----LYGSCFSMKRELLKRLGGRWTAVTETMFPSY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP---- 124 V ++ + ++ ++ +P +G PI +KE + +N L++ + Sbjct: 58 VFLETEQPERLFYELKRLPEYTRLLGDNEGCFIPI-EKEEENFLNILRRNEKETCVAGLT 116 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 + +R DGP F + +++ K V + + G+ Sbjct: 117 TLDLDEDGGIRKADGPLQFFLDKIVKLNLRKRFAVVELKVAGKE 160 >UniRef50_C5B0S5 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B0S5_METEA Length = 187 Score = 75.3 bits (184), Expect = 9e-13, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 28/191 (14%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W +V+A G +V L+ V E+ G+ + + Sbjct: 7 WLIVRAQLGRFSQVVEGLKS---------AGCPVFEARREIRVQTDGKPKVTNAPMMGRT 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGT-------------SDRPAPISDKEVDAIMNRL 115 + V + L+ + V G + RPA I K + + + Sbjct: 58 LFVGVE-EPEYACLLAGLDYVHGILCRGEGMWIWADEIAIQGARPAMIPPKMMTEFADHI 116 Query: 116 -----QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 G + +TLF G+ VR+++G FA F +E VD ++ R V+V +FGR P Sbjct: 117 TGHKKAGKGVQDFVETLFSVGDEVRISNGAFATFMAKIEGVDVKRGRYTVAVDVFGRPVP 176 Query: 171 VELDFSQVEKA 181 E+ +E A Sbjct: 177 FEIAEESLEAA 187 >UniRef50_P36262 Transcription antitermination protein nusG (Fragment) n=8 Tax=Alphaproteobacteria RepID=NUSG_LIBAS Length = 70 Score = 75.3 bits (184), Expect = 9e-13, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 48/68 (70%) Query: 113 NRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE 172 N+++ +P FE GE V V+DGPFA FNG+V+ VD EKSR+ V V IFGR TPVE Sbjct: 1 NQVEAAVQRPVSSVFFEVGERVCVSDGPFASFNGIVKNVDEEKSRVHVEVVIFGRVTPVE 60 Query: 173 LDFSQVEK 180 L ++QVEK Sbjct: 61 LAYNQVEK 68 >UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBM5_9SPHI Length = 170 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 63/177 (35%), Gaps = 21/177 (11%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +E K+WY V S E + + L +P + ++ +++ E Sbjct: 4 TERDIKKWYPVCTQSRAEKKAYSELTRKNITS---------YLPLQRQMKQWSDRKKWVE 54 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 Y+ V + + L+ + FI + A + +++++ + + Sbjct: 55 EPLIRSYLFVHISRQQQAEVLM--TSGIARFIYFSG-HIASMPEQQIEQLKLLTASPYEL 111 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + GE + + GP +G V V Y + K+ V + EL+ + + Sbjct: 112 EITENNLLEGEKITIKAGPLQGMSGEV--VAYRSQK-KLLVRM------TELNHAIL 159 >UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like protein n=57 Tax=Bacteroides RepID=A6L3Q7_BACV8 Length = 166 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 15/176 (8%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+W V E + A E + N+E+ +P +E + +++K +R P Sbjct: 2 KKWLVAYVRLHHEKKTA----ERLTAMNIEN-----FLPVQEEIRQWTYRKKKIKRVVIP 52 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGF-IGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP- 124 + V + + S V ++ + + + PA I D++++ L + Sbjct: 53 MMIFVHVDAAERS--QVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMC 110 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 PGE++RV GP G + EVD K+++ V + + G V++ VEK Sbjct: 111 TAPLAPGELIRVVKGPLKGLEGELVEVD-GKAKVVVRLDLLG-CAGVDMPVGFVEK 164 >UniRef50_UPI0001BCE1C5 transcription antitermination protein NusG n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE1C5 Length = 77 Score = 73.7 bits (180), Expect = 3e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 40/64 (62%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WY +Q ++G E V ++ + H +E+ EV+VPTE+V+EI+ G+++ +E +P Sbjct: 3 HKWYAIQTYAGSEMSVKRAIENLVVDHGIEEQLLEVVVPTEDVIEIKNGKQKINEESLYP 62 Query: 67 GYVL 70 GY Sbjct: 63 GYAF 66 >UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J1W0_9FLAO Length = 154 Score = 73.0 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 21/156 (13%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WY + E +VA L+ L P + +++K P Sbjct: 2 NWYALYTKPRNEQKVAQKLQA---------LGIIAYCPLVLSSKQWSDRKKKVLVPLLPS 52 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV VQ+ + + V V V+ ++ +PA I E++A+ +L D P Sbjct: 53 YVFVQIE--EQNRKDVFQVGGVVQYV-FWLGKPAIIKPNEIEALKQQL----DSSIPVVH 105 Query: 128 FE-----PGEMVRVNDGPFADFNGVVEEVDYEKSRL 158 FE E +++ +G F + +V+++ K RL Sbjct: 106 FEMTTWRSNETIQITEGVFKGQDAIVDKISTNKVRL 141 >UniRef50_A4E6I1 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I1_9ACTN Length = 167 Score = 71.8 bits (175), Expect = 9e-12, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 1/152 (0%) Query: 27 REHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSV 86 RE I+ E+ P + G+ + + FPGY++ + + Sbjct: 2 RERIERMVPASAMQELFYPQYQTEIKVHGEWVSTTKPLFPGYLICDTADPRTVQQYLLRM 61 Query: 87 PRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNG 146 + + P++ +E I + + + G+ V V GP G Sbjct: 62 DDFAR-VLSQDGQFVPLAKEETQLIGSFTNRGDRVVPMSEALKDGDQVVVTAGPLLGHEG 120 Query: 147 VVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +++ ++ KS + + + GR + + + Sbjct: 121 LIKTINRRKSTAYLELDLCGRRVTTRVGLAVL 152 >UniRef50_B0SHW0 Transcription antiterminator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SHW0_LEPBA Length = 179 Score = 71.0 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 17/157 (10%) Query: 1 MSE----APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ 56 MSE + + WY+V E +++ LR+ E +P + + + Sbjct: 1 MSETNPHSEESAWYIVYTKPRAEKKLSELLRK---------YHIENYLPIRKERKKWTDR 51 Query: 57 RRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ 116 + P Y+ V++V + V +P + F+ +PA + ++D + LQ Sbjct: 52 FKWIHVPVLPSYIFVRIVFWRDK-NKVLQLPGSVQFV-FHKGQPAIVEQNDLDVLEKGLQ 109 Query: 117 QVGDKPR--PKTLFEPGEMVRVNDGPFADFNGVVEEV 151 + + + P+ L + G++VR+ DG F + +V Sbjct: 110 EYAESLKMNPELLLQKGKLVRIIDGSFVGKTMEIIKV 146 >UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8J5_9SPHI Length = 173 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 13/146 (8%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 ++W+ V +E +V L+ P +V + + E F Sbjct: 12 QKWFAVYTRPRWEKKVEQQLKM---------QGITCYCPLRKVQSQWADRIKVVELPLFS 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 YV V + + VR V+ F+ A I ++ I + L++ D Sbjct: 63 SYVFVCIHPREELN--VRLNIGVVNFVYYMGHL-AEIRHSVIEEIKSNLEKYPDAEIVSM 119 Query: 127 -LFEPGEMVRVNDGPFADFNGVVEEV 151 E G+ VR+ G + G V +V Sbjct: 120 RDLEVGDRVRIKAGLMGEQEGKVLQV 145 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AA01 Transcription antitermination protein nusG n=217... 208 8e-53 UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 ... 199 4e-50 UniRef50_P57151 Transcription antitermination protein nusG n=17 ... 197 1e-49 UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 ... 195 5e-49 UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 T... 190 1e-47 UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 T... 189 4e-47 UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 T... 188 6e-47 UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 ... 185 6e-46 UniRef50_D1CD65 Transcription antitermination protein nusG n=5 T... 183 3e-45 UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 T... 182 3e-45 UniRef50_P65591 Transcription antitermination protein nusG n=84 ... 182 4e-45 UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 ... 182 5e-45 UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 T... 181 8e-45 UniRef50_B4R8J9 Transcription antitermination protein nusG n=157... 180 1e-44 UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 ... 180 1e-44 UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 T... 180 1e-44 UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 T... 180 2e-44 UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 T... 180 3e-44 UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212... 179 3e-44 UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 T... 178 6e-44 UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 T... 178 6e-44 UniRef50_D1BP79 Transcription antitermination protein nusG n=5 T... 177 2e-43 UniRef50_P35872 Transcription antitermination protein nusG n=13 ... 176 3e-43 UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 T... 175 5e-43 UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 T... 175 6e-43 UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 ... 175 7e-43 UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 T... 174 9e-43 UniRef50_Q87A27 Transcription antitermination protein nusG n=71 ... 174 9e-43 UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 T... 174 1e-42 UniRef50_P27309 Transcription antitermination protein nusG n=58 ... 174 1e-42 UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 T... 173 2e-42 UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 T... 172 3e-42 UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 T... 172 3e-42 UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 T... 172 3e-42 UniRef50_B3E158 Transcription antitermination protein nusG n=3 T... 172 7e-42 UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 ... 171 8e-42 UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 T... 171 8e-42 UniRef50_B3T6R2 Putative transcription termination factor nusG n... 171 1e-41 UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 ... 170 1e-41 UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 T... 170 1e-41 UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 T... 169 4e-41 UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 ... 168 5e-41 UniRef50_D2MPP9 Transcription termination/antitermination factor... 168 7e-41 UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 ... 168 8e-41 UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 T... 168 8e-41 UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 T... 168 9e-41 UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 T... 168 9e-41 UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 T... 168 9e-41 UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 ... 167 1e-40 UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 T... 167 1e-40 UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula st... 167 2e-40 UniRef50_A6CA55 Transcription antitermination protein nusG n=1 T... 167 2e-40 UniRef50_C4LL90 Transcription antitermination protein nusG n=5 T... 166 2e-40 UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 ... 166 2e-40 UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 T... 166 3e-40 UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 ... 166 3e-40 UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 T... 165 5e-40 UniRef50_P52852 Transcription antitermination protein nusG n=51 ... 165 7e-40 UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococ... 165 9e-40 UniRef50_A0Q872 Transcription antitermination protein nusG n=11 ... 164 1e-39 UniRef50_B0S060 Transcription antitermination protein nusG n=5 T... 163 2e-39 UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 ... 163 2e-39 UniRef50_C8NX40 Transcription antitermination protein nusG n=1 T... 163 3e-39 UniRef50_P68893 Transcription antitermination protein nusG n=32 ... 163 3e-39 UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 ... 162 5e-39 UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 T... 162 6e-39 UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 T... 162 6e-39 UniRef50_C2KN14 Transcription antitermination protein nusG n=3 T... 161 9e-39 UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 T... 161 9e-39 UniRef50_B3EL56 Transcription antitermination protein nusG n=8 T... 161 1e-38 UniRef50_P36265 Transcription antitermination protein nusG n=48 ... 159 4e-38 UniRef50_A7BC06 Transcription antitermination protein nusG n=2 T... 159 5e-38 UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 T... 158 6e-38 UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 T... 158 9e-38 UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 T... 157 1e-37 UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 T... 157 1e-37 UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 T... 157 2e-37 UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 ... 154 1e-36 UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 ... 154 1e-36 UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 T... 153 2e-36 UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 T... 153 2e-36 UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 T... 153 2e-36 UniRef50_A5TS63 Transcription antitermination protein nusG n=10 ... 153 3e-36 UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 T... 152 7e-36 UniRef50_C7NC81 Transcription antitermination protein nusG n=10 ... 151 1e-35 UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 T... 150 2e-35 UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 T... 150 2e-35 UniRef50_O83264 Transcription antitermination protein nusG n=4 T... 148 6e-35 UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 T... 147 2e-34 UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 T... 147 3e-34 UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 T... 145 6e-34 UniRef50_C0W699 Transcription antitermination protein nusG n=1 T... 145 8e-34 UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 ... 145 9e-34 UniRef50_B0A697 Transcription antitermination protein nusG n=1 T... 144 1e-33 UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 T... 144 1e-33 UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 T... 143 2e-33 UniRef50_O51355 Transcription antitermination protein nusG n=22 ... 141 8e-33 UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 T... 141 1e-32 UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 T... 137 2e-31 UniRef50_A6FV14 Transcription antitermination protein nusG n=2 T... 136 4e-31 UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycopla... 135 5e-31 UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 T... 135 7e-31 UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 T... 135 7e-31 UniRef50_A3WUF1 Transcriptional antitermination protein, putativ... 135 7e-31 UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella ... 133 3e-30 UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=My... 132 4e-30 UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 T... 132 4e-30 UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella ... 132 6e-30 UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 T... 132 7e-30 UniRef50_O84322 Transcription antitermination protein nusG n=14 ... 132 7e-30 UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomon... 131 9e-30 UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 T... 131 1e-29 UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 T... 131 1e-29 UniRef50_A5CC98 Transcription antitermination protein nusG n=2 T... 130 2e-29 UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=My... 130 2e-29 UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 T... 130 2e-29 UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacil... 130 2e-29 UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 129 4e-29 UniRef50_C6PET8 Transcription antitermination protein nusG n=1 T... 129 4e-29 UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobac... 128 6e-29 UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitro... 128 6e-29 UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomon... 128 1e-28 UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 T... 128 1e-28 UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 T... 127 2e-28 UniRef50_Q1Q029 Similar to transcription antitermination protein... 127 2e-28 UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobac... 126 3e-28 UniRef50_B5Y935 Transcription antitermination protein nusG n=1 T... 126 3e-28 UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteri... 126 4e-28 UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria Rep... 125 5e-28 UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella ... 124 1e-27 UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 T... 124 1e-27 UniRef50_C2NS75 Transcription antitermination protein nusG n=2 T... 124 1e-27 UniRef50_UPI0001692BF2 putative transcription antiterminator n=1... 123 2e-27 UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosoco... 123 2e-27 UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomon... 123 3e-27 UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacteriu... 123 3e-27 UniRef50_Q982S4 Transcription antitermination protein nusG n=1 T... 122 5e-27 UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 T... 121 8e-27 UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collins... 121 1e-26 UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofu... 121 1e-26 UniRef50_UPI00016C58F1 transcription antitermination protein Nus... 120 2e-26 UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonad... 120 2e-26 UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibac... 120 3e-26 UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 T... 118 6e-26 UniRef50_C8PLY0 Transcription antitermination protein, NusG fami... 118 9e-26 UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collins... 118 1e-25 UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteob... 117 1e-25 UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 T... 117 1e-25 UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter ... 117 2e-25 UniRef50_A4EGG1 Transcriptional antitermination protein, putativ... 117 2e-25 UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas... 116 2e-25 UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma pro... 116 3e-25 UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionale... 116 4e-25 UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 T... 116 4e-25 UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idioma... 115 8e-25 UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Cl... 115 9e-25 UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 T... 114 1e-24 UniRef50_P29397 Transcription antitermination protein nusG n=12 ... 114 2e-24 UniRef50_O67757 Transcription antitermination protein nusG n=7 T... 114 2e-24 UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lenti... 113 2e-24 UniRef50_B8KUX9 Transcription termination factor nusG domain pro... 113 3e-24 UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 T... 113 3e-24 UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 T... 113 4e-24 UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiacea... 111 8e-24 UniRef50_Q2CAE9 Transcriptional antitermination protein, putativ... 111 9e-24 UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 T... 111 1e-23 UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium El... 111 1e-23 UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga... 111 1e-23 UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein... 110 2e-23 UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus ... 110 2e-23 UniRef50_B5YJ95 Transcription termination factor NusG domain pro... 110 2e-23 UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdema... 110 3e-23 UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas ... 110 3e-23 UniRef50_B6GA74 Putative uncharacterized protein n=1 Tax=Collins... 110 3e-23 UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerot... 110 3e-23 UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanell... 109 3e-23 UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus S... 109 4e-23 UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus... 109 4e-23 UniRef50_Q98R28 TRANSCRIPTION ANTITERMINATION PROTEIN n=1 Tax=My... 109 5e-23 UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga... 108 6e-23 UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 T... 108 7e-23 UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga... 108 8e-23 UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanell... 108 1e-22 UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus ... 108 1e-22 UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira ... 107 1e-22 UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 T... 107 2e-22 UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 T... 106 2e-22 UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromon... 106 2e-22 UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 ... 106 3e-22 UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=... 106 3e-22 UniRef50_B6TZG2 Transcription termination factor nusG family pro... 106 3e-22 UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 T... 106 4e-22 UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterob... 106 5e-22 UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobi... 105 7e-22 UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 T... 105 7e-22 UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus S... 105 9e-22 UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus Rep... 105 9e-22 UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium ... 104 1e-21 UniRef50_A4YU22 Transcription antitermination protein nusG n=1 T... 104 1e-21 UniRef50_Q73PT3 Transcription antitermination protein, NusG fami... 104 1e-21 UniRef50_Q10BA7 Os03g0825500 protein n=3 Tax=Oryza sativa RepID=... 104 1e-21 UniRef50_B1AJM2 Transcription termination/antitermination factor... 104 2e-21 UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga... 103 2e-21 UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga... 103 2e-21 UniRef50_Q2GD85 Putative transcription termination/antiterminati... 103 3e-21 UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoeki... 103 4e-21 UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobi... 103 4e-21 UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp... 101 8e-21 UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobac... 101 8e-21 UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia ... 101 1e-20 UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 T... 101 1e-20 UniRef50_Q4A648 Transcription antitermination protein n=1 Tax=My... 100 2e-20 UniRef50_B9HCH7 Predicted protein n=1 Tax=Populus trichocarpa Re... 100 2e-20 UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 T... 100 2e-20 UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 T... 100 3e-20 UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostri... 99 6e-20 UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobiu... 99 6e-20 UniRef50_A5FN19 Transcription antitermination protein nusG n=1 T... 98 1e-19 UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacte... 98 1e-19 UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Gl... 98 1e-19 UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Ag... 98 1e-19 UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 T... 97 2e-19 UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobi... 97 3e-19 UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabac... 97 4e-19 UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma li... 96 4e-19 UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bactero... 96 4e-19 UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algic... 96 7e-19 UniRef50_A9BF38 Transcription antitermination protein nusG n=1 T... 95 8e-19 UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus... 95 1e-18 UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacte... 95 1e-18 UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verru... 95 1e-18 UniRef50_D1PRH1 Putative transcription termination factor NusG n... 94 2e-18 UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q... 94 2e-18 UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacte... 93 3e-18 UniRef50_UPI00016C34F5 transcription antitermination protein nus... 93 3e-18 UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=De... 93 4e-18 UniRef50_UPI0001972DAA NusG antitermination factor n=1 Tax=Clost... 93 4e-18 UniRef50_A4E6I1 Putative uncharacterized protein n=1 Tax=Collins... 92 7e-18 UniRef50_Q5LEP1 Putative LPS-related regulatory protein n=4 Tax=... 91 2e-17 UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like pro... 91 2e-17 UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavo... 91 2e-17 UniRef50_C8WIA4 NusG antitermination factor n=1 Tax=Eggerthella ... 90 3e-17 UniRef50_UPI0001B49F58 putative LPS-related regulatory protein n... 90 4e-17 UniRef50_A4E6Y7 Putative uncharacterized protein n=1 Tax=Collins... 90 4e-17 UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 T... 89 5e-17 UniRef50_A9SPI1 Predicted protein n=1 Tax=Physcomitrella patens ... 89 7e-17 UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimont... 88 8e-17 UniRef50_Q7NAK3 NusG n=2 Tax=Mycoplasma gallisepticum RepID=Q7NA... 88 9e-17 UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1... 88 1e-16 UniRef50_C3RM78 NusG antitermination factor n=2 Tax=Bacteria Rep... 88 2e-16 Sequences not found previously or not previously below threshold: >UniRef50_P0AA01 Transcription antitermination protein nusG n=217 Tax=Proteobacteria RepID=NUSG_ECOL6 Length = 181 Score = 208 bits (529), Expect = 8e-53, Method: Composition-based stats. Identities = 180/181 (99%), Positives = 181/181 (100%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNME+LFGEVMVPTEEVVEIRGGQRRKS Sbjct: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKS 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD Sbjct: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK Sbjct: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 Query: 181 A 181 A Sbjct: 181 A 181 >UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 Tax=cellular organisms RepID=Q01SW9_SOLUE Length = 239 Score = 199 bits (506), Expect = 4e-50, Method: Composition-based stats. Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 1/180 (0%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 E+ K+WY++ +SGFE +V SLR D G++++PTEEVVE+R G++ S+ Sbjct: 61 DESSAKKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSK 120 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 R +PGYVLV+M MNDA WH V++ PRV GF+GG + P P+S EV++I+ R ++ Sbjct: 121 RLVYPGYVLVEMEMNDALWHEVKNTPRVTGFVGG-GNSPVPLSADEVNSILYRQASSAER 179 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 PRPK FE + VR+ DGPFA+F+G V+EV+ E+ L+V V+IFGRATPVEL+F QVEK Sbjct: 180 PRPKMTFEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239 >UniRef50_P57151 Transcription antitermination protein nusG n=17 Tax=Proteobacteria RepID=NUSG_BUCAI Length = 181 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 145/180 (80%), Positives = 169/180 (93%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M E+ KKRWYV+QAFSGFE RVA S+REH+KL+ MEDLFGEVMVP++EVVEIRGGQRRKS Sbjct: 1 MHESQKKRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKS 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E KFFPGYVL+QM M D++WHL+R+VP+V+GFIGG SD+P+PISDKEV+ I+NRL+++G+ Sbjct: 61 EYKFFPGYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGN 120 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KPRPKTLFEPGEM+RVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR+TPVELDF QVEK Sbjct: 121 KPRPKTLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 Tax=Bacteria RepID=NUSG_PASMU Length = 183 Score = 195 bits (496), Expect = 5e-49, Method: Composition-based stats. Identities = 142/182 (78%), Positives = 159/182 (87%), Gaps = 1/182 (0%) Query: 1 MSEAP-KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M+E KKRWYV+QAFSGFEGRVAT+LRE+IKLH MED FGEV+VPTEEVVE G+RRK Sbjct: 1 MTETTTKKRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRK 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 SERKFFPGYVLVQM MND +WHLVRSVPRVMGFIGGT+D+PAPIS +E D I+NRLQ+ Sbjct: 61 SERKFFPGYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESS 120 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +KPR + F+PGE VRV +GPFADFNG VEEVDYEK RLKVSVSIFGRATPVEL+FSQVE Sbjct: 121 EKPRHRKEFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVE 180 Query: 180 KA 181 K Sbjct: 181 KT 182 >UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE5_HALO1 Length = 189 Score = 190 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 86/179 (48%), Positives = 120/179 (67%), Gaps = 2/179 (1%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + K +WYVV +G+E RV +L++ +D GE++VPT V+E+ G+R+ S + Sbjct: 13 QNDKFKWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTK 72 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 KFFPGY+ VQM D+ +HL+R+ P+V GF+G + P P+ + E+ I N + KP Sbjct: 73 KFFPGYIFVQMEFTDSVYHLIRNTPKVTGFVG--GNTPQPVPESEISVIHNTMSDNHSKP 130 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 RPK +FE G+ VRV DGPFA F VEEV +K +L+V V+IFGRATPVELDF+QVEKA Sbjct: 131 RPKVMFEQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEKA 189 >UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2W0_ACIFD Length = 243 Score = 189 bits (479), Expect = 4e-47, Method: Composition-based stats. Identities = 81/178 (45%), Positives = 113/178 (63%), Gaps = 5/178 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +SG+E RV +L I+ +ED EV +P E+V E++ G+R K +RK FPG Sbjct: 67 EWYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPG 126 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK-- 125 YVLV+ M+D W +R+ P + F+G +P P+S KEV+A+ + +P+P+ Sbjct: 127 YVLVRAEMDDEVWSAIRNTPGITSFVGS-GSKPVPLSRKEVEAMFSFATPEELRPQPQRR 185 Query: 126 --TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 FE GE VRV +GP ADF G V EV+ ++ +LKV +IFGR TPVELDF+QV KA Sbjct: 186 STQEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSKA 243 >UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 Tax=Bacteria RepID=A5D5K3_PELTS Length = 175 Score = 188 bits (478), Expect = 6e-47, Method: Composition-based stats. Identities = 84/175 (48%), Positives = 122/175 (69%), Gaps = 3/175 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WYVV +SG+E +V +L + I NMED ++VP E+ VEI+ G+++ S+RK F Sbjct: 2 EKKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKIF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGYVLV+M+M D SW++VR+ P V GF+G RP P++D E I+ ++ +PR + Sbjct: 62 PGYVLVEMIMTDDSWYVVRNTPGVTGFVGS-GSRPIPLNDAEARQIIRQMGVE--EPRTR 118 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE +RV GPF +F G +EE++ EKS++KV +S+FGR TPVELDF+QVEK Sbjct: 119 VDFTVGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEK 173 >UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=A6W3A4_MARMS Length = 177 Score = 185 bits (470), Expect = 6e-46, Method: Composition-based stats. Identities = 122/175 (69%), Positives = 151/175 (86%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 KRWYVVQA+SG+E V SL E +++ E+ FG+++VPTEEVVEIR G++RKSERKF+P Sbjct: 3 KRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKFYP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLVQM MNDASWHLV+ RV+GFIGGT+D+P+PI+ +E DAI+ R+ DKPRPKT Sbjct: 63 GYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRPKT 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 LFE GE+VRVN+GPFADFNGVVEEVDY+KSR+KV+V IFGR+TPV+L+FSQVEKA Sbjct: 123 LFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEKA 177 >UniRef50_D1CD65 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=D1CD65_THET1 Length = 201 Score = 183 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 118/176 (67%), Gaps = 3/176 (1%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 +WYV+ +SG+E +V L+ ++ M D +++VPT E +EIR G+R K ++K Sbjct: 26 DGFQWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKV 85 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVLV+M M+DA+W++VR P V GF+G +P P+ +KEV+ I+ R+ + P+ Sbjct: 86 FPGYVLVRMRMDDAAWNVVRYTPGVTGFVGS-GTKPTPLDEKEVEKILQRMSEE--PPKV 142 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 K GE VR+ DGPF DF G V+E++ EK ++KV +SIFGR TPVELDF QVEK Sbjct: 143 KMSLRLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEK 198 >UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=C8XBG0_NAKMY Length = 306 Score = 182 bits (463), Expect = 3e-45, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 10/183 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +++G+E +V T+L IK +MED ++ VPTEEV EI+ GQR++ +RK +PG Sbjct: 123 EWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPG 182 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ----------Q 117 Y+LV+M + D SW VR+ P V GF+G T+ +P+ ++ EV I+ Sbjct: 183 YILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTP 242 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 R + F GE V V DGPFA + EV+ + +LKV VSIFGR TPVEL FSQ Sbjct: 243 GSAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQ 302 Query: 178 VEK 180 V K Sbjct: 303 VAK 305 >UniRef50_P65591 Transcription antitermination protein nusG n=84 Tax=Bacteria RepID=NUSG_NEIMA Length = 178 Score = 182 bits (463), Expect = 4e-45, Method: Composition-based stats. Identities = 107/174 (61%), Positives = 136/174 (78%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYVVQA+SGFE V L E I M D FG+++VP E+VV+IR G++ SERK +P Sbjct: 3 KKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKSYP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVLV+M M D SWHLV+S PRV GFIGG ++RP PIS +E + I+ ++Q +KP+PK Sbjct: 63 GYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKPKV 122 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE G+ VRVN+GPFADFNGVVEEV+YE+++L+VSV IFGR TPVEL+FSQVEK Sbjct: 123 EFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEK 176 >UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 Tax=Bacteria RepID=NUSG_BACHD Length = 178 Score = 182 bits (462), Expect = 5e-45, Method: Composition-based stats. Identities = 80/177 (45%), Positives = 123/177 (69%), Gaps = 3/177 (1%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K WYVV +SG+E +V T+L + ++ +M D VMVP EE E++ G+ ++ RK F Sbjct: 2 EKNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKVF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 PGYVLV+MVM D SW++VR+ P V GF+G G +P P+ +EVDAI+ ++ + ++ + Sbjct: 62 PGYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQMG-MQEERQ 120 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + F+ E V+V +GPFA+F G +EE+ +K +LKV V++FGR TPVEL+F+Q+EK Sbjct: 121 VEIDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEK 177 >UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=A3EVT3_9BACT Length = 184 Score = 181 bits (460), Expect = 8e-45, Method: Composition-based stats. Identities = 78/179 (43%), Positives = 114/179 (63%), Gaps = 1/179 (0%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 KK WYV+ ++GFE RV TS+ E + L ++ D+ G+V+VP + V E++ G+++ S Sbjct: 6 DSDSKKNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSS 65 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 RK FPGYVLV+M + + + + P+V GF+G P P+S +EV + +R++ Sbjct: 66 RKVFPGYVLVEMEPTEEAIQFILATPKVTGFLGN-GTTPIPMSSREVSELFDRIESGTAM 124 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P P F E VR+ DGPF F+G++ EVD + +LKV VSIFGR TPVELDF QVE+ Sbjct: 125 PSPSQHFSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVER 183 >UniRef50_B4R8J9 Transcription antitermination protein nusG n=157 Tax=Proteobacteria RepID=B4R8J9_PHEZH Length = 189 Score = 180 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 96/177 (54%), Positives = 136/177 (76%), Gaps = 1/177 (0%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 P+ +WY+V A+S FE +VA S+RE + +E+ F E++VPTE+VVEIR G++ SERK Sbjct: 12 NPRHKWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERK 71 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FFPGYVLV+M M D ++HL+++ P+V GF+G +P P+S+KEV+ I+ +++ ++P+ Sbjct: 72 FFPGYVLVKMEMTDEAYHLIKNTPKVTGFLGS-GSKPIPVSEKEVERIVGAIEEGVERPK 130 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P FE GE VRV DGPFA FNG VE+VD E++RL+V+VSIFGRATPVEL++ QVEK Sbjct: 131 PTITFEIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEK 187 >UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 Tax=Firmicutes RepID=Q1WST1_LACS1 Length = 186 Score = 180 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 109/181 (60%), Gaps = 5/181 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSE 61 E+ +K+WYV+ ++G+E +V +L MED V+VP EE E + G+ + + Sbjct: 6 ESVEKKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEK 65 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVG 119 K FPGYVLV+MVM D SW++VR+ P V GF+G G+ +PAP+ D+E++ I++ L Sbjct: 66 LKTFPGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISS 125 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 E G+ V + DG F+ G + E+D EK +LKV + +FGR T EL++ QV+ Sbjct: 126 R--HSNFDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVD 183 Query: 180 K 180 K Sbjct: 184 K 184 >UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=B9KYX2_THERP Length = 198 Score = 180 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 81/176 (46%), Positives = 119/176 (67%), Gaps = 3/176 (1%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + WYV+ +SG+E +V +L ++ ++ D EV++P +E +EIRGGQR +RK Sbjct: 24 QQGEWYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKV 83 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVLV+M+++D SWH+VR+ P V GF+G +RP P+ E +AI+ ++P+ Sbjct: 84 FPGYVLVRMILDDESWHVVRNTPGVTGFVG-VGNRPVPLDRAEAEAIIR--GAKAEQPKV 140 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + PG++VR+ DGPF DF GVV+EVD EK +++V VS FGR TPV LDF QVE+ Sbjct: 141 RMTLLPGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196 >UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 Tax=Proteobacteria RepID=Q2LQ92_SYNAS Length = 176 Score = 180 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 86/172 (50%), Positives = 126/172 (73%), Gaps = 1/172 (0%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYVV +SGFE +V SL+E I+ M+ F ++++P E+VVE+ G+++ S+RKFFP Sbjct: 3 FKWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKFFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+LV+M ++D +WHLV+ P+V GFIG ++P+PI DK+V+ + R+ + KP+PK Sbjct: 63 GYILVKMELDDDTWHLVKDTPKVTGFIGSR-EKPSPIPDKDVELLKTRIDEGTLKPKPKF 121 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 FE G+ V + DGPF +F+GV++EV EK +L+V VSIFGR TPVELDF QV Sbjct: 122 KFEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173 >UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 Tax=Propionibacterium acnes RepID=Q6A6K1_PROAC Length = 303 Score = 180 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 73/187 (39%), Positives = 101/187 (54%), Gaps = 15/187 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ +SG E +V +L ++ NMED E +VPTEEVVEIR G RR R + PG Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR------------- 114 YVLV+M + D SW +VR P V GF+G S P P++ EV ++ Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVG-QSTTPIPLTFDEVVKMLTPSVVARVSRENADK 235 Query: 115 -LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 +E GE V++ DGPFA + E++ R+K V I GR+TPV+L Sbjct: 236 TSSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDL 295 Query: 174 DFSQVEK 180 +F+Q+EK Sbjct: 296 EFNQIEK 302 >UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212 Tax=Bacilli RepID=NUSG_STAEQ Length = 182 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 72/183 (39%), Positives = 114/183 (62%), Gaps = 5/183 (2%) Query: 1 MSEAPK-KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 MSE KRWY V +SG+E +V +L + ++ NM + V++P EE +++ G+ +K Sbjct: 1 MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKK 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQ 117 +K FPGYVLV+++M D SW++VR+ P V GF+G G +P P+ +EV I+ ++ Sbjct: 61 LVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQM-- 118 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + + GE VR+ GPFA+ G V+E++ +K +L V V +FGR TPVE++F Q Sbjct: 119 GLKEKTIDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQ 178 Query: 178 VEK 180 +EK Sbjct: 179 IEK 181 >UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 Tax=Proteobacteria RepID=C4XIP4_DESMR Length = 187 Score = 178 bits (452), Expect = 6e-44, Method: Composition-based stats. Identities = 95/180 (52%), Positives = 129/180 (71%), Gaps = 1/180 (0%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 + E RWY+V +SGFE RV +LRE ++ EV+VPTE+++E+ G+++ S Sbjct: 8 VDEQSNARWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTS 67 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 RKF+PGYV+V+M M+D SWHLV+S+PRV GFIGG ++P P+ D E I++ + + Sbjct: 68 TRKFYPGYVMVKMAMDDNSWHLVQSIPRVTGFIGGK-NQPTPMRDSEAQKILSLMVSRQE 126 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PRPK FE G+ VRV DGPF FNGVVE+V+Y+K +L+VSVSIFGR TPVELDF QV K Sbjct: 127 QPRPKYHFERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 Tax=Firmicutes RepID=B1I1L1_DESAP Length = 178 Score = 178 bits (452), Expect = 6e-44, Method: Composition-based stats. Identities = 77/177 (43%), Positives = 129/177 (72%), Gaps = 4/177 (2%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+W+VV +SG+E +V +L + I+ +MED ++VP E+ +E++GG+R+ S+RK FP Sbjct: 3 KQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKIFP 62 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 GYV+V+M+++D S+ +VR+ P V GF+G G +P P++D E + I+++++ GD+PR Sbjct: 63 GYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQME--GDEPRI 120 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + PGE VRV GPF +F G V++V+YEK++++V +S+FGR TP+EL++ Q+EK Sbjct: 121 RIDLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177 >UniRef50_D1BP79 Transcription antitermination protein nusG n=5 Tax=Veillonellaceae RepID=D1BP79_VEIPT Length = 178 Score = 177 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 116/178 (65%), Gaps = 2/178 (1%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 K+WYV+ +SG+E +V T+L ++ ++D+ ++VP E+ ++ + G ++ +RK Sbjct: 2 EADKKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRK 61 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYVLV+M +ND SW++VR+ P V GF+G + +P P+SD EV+ I+ + Q + KP Sbjct: 62 IFPGYVLVEMEVNDRSWYVVRNTPGVTGFVGSAT-KPVPLSDSEVEHIL-KSQGLDKKPT 119 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 E GE VR+ G F D GV+ E++ EK LK+SV +F R T VEL+FSQVEKA Sbjct: 120 INVDVEVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEKA 177 >UniRef50_P35872 Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 Length = 184 Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 9/182 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRKSERKFFP 66 WY V G E + +L + IK ++D +V++PTEEVVE+R GG++ +K FP Sbjct: 4 EWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFP 63 Query: 67 GYVLVQMVM-----NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 GY+ +QM + + +W +VR P + GF+G RP P+S EV I+ +G K Sbjct: 64 GYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVG-AGMRPVPLSPDEVRHILEVSGLLGKK 122 Query: 122 PRPK--TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 PK F G+ VRV GPFADF G V E++ E+ ++KV V+IFGR TPVELDFSQV Sbjct: 123 EAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVV 182 Query: 180 KA 181 KA Sbjct: 183 KA 184 >UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBR2_9BACT Length = 193 Score = 175 bits (444), Expect = 5e-43, Method: Composition-based stats. Identities = 73/194 (37%), Positives = 119/194 (61%), Gaps = 15/194 (7%) Query: 1 MSEAPKK------RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG 54 M+E+ + +W+V+ SG E +V + ++ + E +PTE+V E+R Sbjct: 1 MNESAETERDKRGQWFVIHTLSGHENKVRDKILRQLQT-GDQVPVYEAFIPTEKVAEVRQ 59 Query: 55 GQRRKSERKFFPGYVLVQMVM-------NDASWHLVRSVPRVMGFIGGTSDRPAPISDKE 107 G++ + RK FPGY+ V+M + N+ +W+ +RSV V+GF+GG ++P +++ E Sbjct: 60 GKKTTTTRKLFPGYIWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGG-DNKPTALTESE 118 Query: 108 VDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 V+ IM Q + +PK FE GE+VR+ DG F +F G ++E+D E+ +LK+ VSIFGR Sbjct: 119 VEDIMRPAQAGAPEVKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGR 178 Query: 168 ATPVELDFSQVEKA 181 +TPVEL+F QVE+ Sbjct: 179 STPVELEFWQVERT 192 >UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU17_RUBXD Length = 176 Score = 175 bits (444), Expect = 6e-43, Method: Composition-based stats. Identities = 71/175 (40%), Positives = 114/175 (65%), Gaps = 2/175 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYVV +SG E +V +L I+ ++ FGE+ +PTE+V+EI+ G++ + + FP Sbjct: 2 KKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKPRPK 125 GY+LV + MND +W ++R P V +G D+P P+S EV+ +++ + + +K + Sbjct: 62 GYILVNVEMNDDTWRVIRQTPGVTQIVGS-GDKPTPLSRAEVERLLHPEEPEKREKVKAT 120 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ GE VRV GP +DF G + +++ ++S++KV VSIFGR TPVEL F+QV K Sbjct: 121 VDFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAK 175 >UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 Tax=Bacteria RepID=Q0AUG6_SYNWW Length = 203 Score = 175 bits (444), Expect = 7e-43, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 114/172 (66%), Gaps = 2/172 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVV +SG+E ++ L + ++ NM+D EV++P E+ VE + G+R+ + ++ FPGY Sbjct: 33 WYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPGY 92 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V+V M+M+D SW++VR P V GF+G +P P+ +E+D I ++ + K Sbjct: 93 VIVNMIMDDDSWYVVRHTPGVTGFVGS-GSKPIPLHQEEIDKIRRQMGLME-KKTMIIDI 150 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 E GE +RV GPFA+F GVV E+ EK +++V++S+FGR TPVELD+ Q+EK Sbjct: 151 EIGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEK 202 >UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 Tax=Actinomycetales RepID=NUSG_MYCLE Length = 228 Score = 174 bits (442), Expect = 9e-43, Method: Composition-based stats. Identities = 76/190 (40%), Positives = 106/190 (55%), Gaps = 19/190 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +++G+E +V +L ++ ++ D +V VPTEEV EI+ GQRR RK PGY Sbjct: 39 WYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPGY 98 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR----- 123 +LV+M + D SW VR+ P V GF+G TS RP+ ++ +V + + Sbjct: 99 ILVRMDLTDDSWAAVRNTPGVTGFVGATS-RPSALALDDVVKFLLPSGSAKKDAKGAVST 157 Query: 124 -------------PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + +E GE V V DGPFA + EV+ E+ +LKV VSIFGR TP Sbjct: 158 AAAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETP 217 Query: 171 VELDFSQVEK 180 VEL FSQV K Sbjct: 218 VELTFSQVSK 227 >UniRef50_Q87A27 Transcription antitermination protein nusG n=71 Tax=Proteobacteria RepID=NUSG_XYLFT Length = 185 Score = 174 bits (442), Expect = 9e-43, Method: Composition-based stats. Identities = 111/184 (60%), Positives = 142/184 (77%), Gaps = 9/184 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 KRWYVV A+SGFE VA +LR+ I ++D FG+V+VP EEVVE+R GQ+R+SE KFFP Sbjct: 2 KRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFFP 61 Query: 67 GYVLVQMV---------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 GYVL+Q+ +++ WHLV+ P+VMGFIGGT+DRP PIS E D I+ R+Q Sbjct: 62 GYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQD 121 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 +KPRPK LFEPG+MVRV DGPF DF+G+VEEV+YEK+RL+V+V IFGR TPV+LDF Q Sbjct: 122 GAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQ 181 Query: 178 VEKA 181 V+K+ Sbjct: 182 VQKS 185 >UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 Tax=Elusimicrobia RepID=B2KEU4_ELUMP Length = 178 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 76/180 (42%), Positives = 117/180 (65%), Gaps = 4/180 (2%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSE K WY+V +G E +V + ++ N D +V+VPTE+VVE++ ++ + Sbjct: 1 MSE--NKAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQR 58 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 +RKFFP YVLV+M + ++ +R+V V GF+G + P P+ ++E+ AI++ Q Sbjct: 59 KRKFFPSYVLVEMDLTSEAYWFIRNVSGVTGFLGDPN--PVPLPEEEIAAILDLTQPGSG 116 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 KP+ FE GE VR+ +GPF F GVV+EV+ +K++LK+ V++F R+TPVELDF QVEK Sbjct: 117 KPKHVIEFEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEK 176 >UniRef50_P27309 Transcription antitermination protein nusG n=58 Tax=Bacteria RepID=NUSG_STRVG Length = 299 Score = 174 bits (442), Expect = 1e-42, Method: Composition-based stats. Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 17/189 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ ++G+E RV +L + N+E+ + VP EE+V+I+ G+R+ + PG Sbjct: 111 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 170 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR---- 123 YVLV+M + + SW +VR+ P V GF+G D P P++ E+ ++ Q Sbjct: 171 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYD-PYPLTLDEIVKMLAPEAQEKAAKAAAEE 229 Query: 124 ------------PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 FE G+ V V DGPFA + E++ + ++K V IFGR TPV Sbjct: 230 AGLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPV 289 Query: 172 ELDFSQVEK 180 EL F Q++K Sbjct: 290 ELSFDQIQK 298 >UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJ02_BDEBA Length = 177 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 87/175 (49%), Positives = 120/175 (68%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WY+V + E ++ E IK ME+ FGE+++P E VVE+ GQ++ RKFF Sbjct: 2 EKKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKFF 61 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGY+ VQM +ND +WHLVR+ +V GF+GGT RP + + EV + ++ V +KPRPK Sbjct: 62 PGYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRPK 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE V V DGPF++F G VEE++ +K++LKV VSIFGR TPVELD+ QVEK Sbjct: 122 VKFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176 >UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6U2_THEAS Length = 181 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 2/180 (1%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + K+RWY+VQ +SG+E +V +L + I MED V+VP EE V ++ G+ ++ R Sbjct: 2 KDDKRRWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRR 61 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDK 121 K FP YVLV+M+M+D SW++VR P V GF+G + P P++D+EV +M ++ K Sbjct: 62 KVFPSYVLVEMIMDDQSWYVVRHTPGVTGFVGS-GNHPIPLTDREVAEVMGKIGLPADRK 120 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P+ + E G+ VRV GPF G V EVD +K R++ SV++FGR T E +EK Sbjct: 121 PKVELDIEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKV 180 >UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPF7_9ACTO Length = 274 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 67/188 (35%), Positives = 97/188 (51%), Gaps = 14/188 (7%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 RWYV+ +SG+E RV L + NMED ++ VP EEV EIR GQR+ R Sbjct: 86 DGRWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRM 145 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL---------- 115 PGYVL++M + D SW +V+S V GF+G P +S+ EV +++ + Sbjct: 146 PGYVLIRMDLTDDSWRVVQSTNGVTGFVGN-GRTPVALSENEVVSMLTPVIEAEAAAEAV 204 Query: 116 ---QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE 172 + P + + G+ V + P+A V EVD RL V +++ G+ TPVE Sbjct: 205 AAGKAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVE 264 Query: 173 LDFSQVEK 180 L F+QV K Sbjct: 265 LSFNQVRK 272 >UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 Tax=Leptospira RepID=B0SAG6_LEPBA Length = 184 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 119/181 (65%), Gaps = 2/181 (1%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M ++ K+WYV+Q +SG E +V T++ + ++ +ED V +P+ EV E++ G+++ + Sbjct: 1 MGDSLDKKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVT 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 ++K PGYVLV+M M D ++++P V F+GG P P+S E+ + + + V Sbjct: 61 KKKLMPGYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVES 120 Query: 121 KP--RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + RP+ LF+ GE +++ DGPFA+F G+V+E+ +K RL+V V IFGR+TPVELD+ QV Sbjct: 121 EEVSRPRFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQV 180 Query: 179 E 179 + Sbjct: 181 K 181 >UniRef50_B3E158 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B3E158_METI4 Length = 201 Score = 172 bits (435), Expect = 7e-42, Method: Composition-based stats. Identities = 77/187 (41%), Positives = 119/187 (63%), Gaps = 9/187 (4%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +++ +WY + SG E +V +L + IK M+DL GEV++P E V E+R G+R + Sbjct: 16 AKSQNMQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEIN 75 Query: 62 RKFFPGYVLVQMVMND-------ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 RK +PGYV +Q+ + D +W+ VR V+GF D P P+ ++V+ ++ + Sbjct: 76 RKLYPGYVFLQIQLRDSSGKLIERAWYFVRETSGVIGF--ADGDNPLPMPREQVEGMLRQ 133 Query: 115 LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 +Q+ PKT+F G+ V+V DGPF + GV+EEVD E+ +L+VSV+IFGR+TPVEL+ Sbjct: 134 IQERTSSALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELE 193 Query: 175 FSQVEKA 181 + QVEKA Sbjct: 194 YWQVEKA 200 >UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=C4Z2Q9_EUBE2 Length = 178 Score = 171 bits (434), Expect = 8e-42, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 109/176 (61%), Gaps = 2/176 (1%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 +WYVV +SG+E +V ++ + ++ N+ D EV+VP E VVEI+ G ++ +++K Sbjct: 2 DDAKWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKM 61 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI-MNRLQQVGDKPR 123 FPGYVLV+MVMND SW++VR+ V GF+G +P P++ E+ + ++ ++ KP Sbjct: 62 FPGYVLVKMVMNDDSWYVVRNTRGVTGFVG-PGSKPVPLTPTEIKNLGISLEEEQEVKPV 120 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + + G+ V + G + D G + ++ K L ++V +FGR TPVE+DF+ V+ Sbjct: 121 IQFAGKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176 >UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9H7_PLALI Length = 204 Score = 171 bits (434), Expect = 8e-42, Method: Composition-based stats. Identities = 63/181 (34%), Positives = 108/181 (59%), Gaps = 3/181 (1%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S WYV++ S E + +L I+ +E FGE+++PTE+VVE + G+++ E Sbjct: 24 STENAMLWYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVE 83 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD- 120 K +PGY++VQM++ND +W++VR+ V F G +P P+ D E+ ++ + +Q + Sbjct: 84 HKLYPGYLMVQMILNDDTWYIVRTTGGVGDFTGSAG-KPTPMQDHEIARMLQKQEQKQES 142 Query: 121 -KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 P K F G++V++ +G F F G ++ +D ++ V V IFGR+TPVEL++ Q E Sbjct: 143 AAPAMKIEFAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAE 202 Query: 180 K 180 + Sbjct: 203 R 203 >UniRef50_B3T6R2 Putative transcription termination factor nusG n=2 Tax=prokaryotic environmental samples RepID=B3T6R2_9ZZZZ Length = 272 Score = 171 bits (433), Expect = 1e-41, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 122/177 (68%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + P +WY++QA+SG+EGRV ++RE +++ +E L E+ +P+E+++ + G++RK + Sbjct: 92 QNPNVKWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQ 151 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K+FPGYVL+ M + WHL+ +V RV GFIGGT +P P+ +KE++ I +++ + + Sbjct: 152 KYFPGYVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQK 211 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + + G+ V + +G F +F+G ++EV+ E+ +LKV VSIFGR TPVE++F V+ Sbjct: 212 ATEDEYSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVK 268 >UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 Tax=Clostridiales RepID=A6LPP9_CLOB8 Length = 181 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 7/177 (3%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + + RWYVV +SG+E +V +L + I+ N+E L ++ VP EEVVE + G+++ S +K Sbjct: 10 SDRARWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKK 69 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYVLV+M+M D +W++VR+ V GF+G +P P+SD+EV+++ + Sbjct: 70 KFPGYVLVKMLMGDEAWYVVRNTRGVTGFVG-PGSKPVPLSDEEVESM------GVLEVP 122 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + E GE +R+ GP D ++E+ +K ++K V +FGR T ELDF+QVEK Sbjct: 123 VEIDLEVGESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEK 179 >UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 Tax=Desulfotalea psychrophila RepID=Q6AP83_DESPS Length = 177 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 89/173 (51%), Positives = 129/173 (74%), Gaps = 2/173 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++QA SGFE +V +L + IK +ED FG+++VPTE+VVE+ G R+ S +KFFP Sbjct: 3 KQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKFFP 62 Query: 67 GYVLVQMVMNDASWH-LVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 GY+L+ M + D +WH + ++PRV+GF+G + P P+SD+E I+ R+Q+ ++PRPK Sbjct: 63 GYMLINMELTDETWHTVHENMPRVVGFVGDDRN-PMPLSDEEAAKIIGRIQEGSERPRPK 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +F+ GE VRV DGPF++F GVV+EV +K R++V VSIFGR TPVEL+F QV Sbjct: 122 VIFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174 >UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 Tax=Synergistaceae RepID=C9M8Z2_9BACT Length = 185 Score = 169 bits (428), Expect = 4e-41, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 110/180 (61%), Gaps = 2/180 (1%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E +W+ VQ +SG+E +V +L + I N ED V+VP E+VV ++ G+ ++ R Sbjct: 7 EQANVQWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSR 66 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK- 121 K FP YVLV+M+M+D SW++VR P V GF+G P P+SD+EV ++ ++ ++ + Sbjct: 67 KLFPSYVLVEMIMDDQSWYVVRHTPGVTGFVG-AGAHPLPLSDEEVRDVLVKVGELEAET 125 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P+ + G+ VRV GPF GVV +V+ ++K +S+FGR T E++ +++E+ Sbjct: 126 PQIVVECQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185 >UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 Tax=Bifidobacteriaceae RepID=B8DVU5_BIFA0 Length = 330 Score = 168 bits (427), Expect = 5e-41, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 13/187 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + +WYV+ +SG+E RV +++ ++ +ED +V VP EEV + ++ R Sbjct: 142 EGKWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRV 201 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG------ 119 PGYVL++M ++ + +VR V GF+G S PAP+S KEV ++M + Sbjct: 202 PGYVLIRMYPDENARRIVRETEGVTGFVG-PSREPAPLSRKEVVSMMAPMIASHALKEAG 260 Query: 120 ------DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 K + ++ G+ V V DGPF + VV +V+ +L V VSIFGR TPVEL Sbjct: 261 DKPAAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVEL 320 Query: 174 DFSQVEK 180 F QV++ Sbjct: 321 GFDQVQR 327 >UniRef50_D2MPP9 Transcription termination/antitermination factor NusG n=2 Tax=Erysipelotrichaceae RepID=D2MPP9_9FIRM Length = 196 Score = 168 bits (426), Expect = 7e-41, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 101/182 (55%), Gaps = 5/182 (2%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 + + RWYVV ++G E RV +L + ++ +++ + V EE + I+ + + + Sbjct: 13 DDENEVRWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVK 72 Query: 62 R-KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD--RPAPISDKEVDAIMNRLQQV 118 + FPGY+ VQM M D +W++VR+ P V GFIG + +P P+S+ E+++I+ R+ Sbjct: 73 KVNMFPGYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHG 132 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 K F+ G+ V++ GPFA+ G + ++ + V +FGR TP E+ + + Sbjct: 133 DQKV--VVDFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDL 190 Query: 179 EK 180 +K Sbjct: 191 QK 192 >UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 Tax=Corynebacterineae RepID=A4QBE9_CORGB Length = 318 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 71/201 (35%), Positives = 102/201 (50%), Gaps = 23/201 (11%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + WY++Q +SG+E +V +L + +ED EV+VP E+V EIR G+R+ +R Sbjct: 118 KKQPGVWYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKR 177 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ----- 117 K PGYVLV+M MND W +VR P V F+G + P+ ++V + +Q Sbjct: 178 KLLPGYVLVRMDMNDRVWSVVRDTPGVTSFVGNEGNA-TPVKHRDVAKFLMPQEQAVVTG 236 Query: 118 -----------------VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV 160 KP+ F GE V + G FA + + +D E +L+V Sbjct: 237 EAAAAADEGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEV 296 Query: 161 SVSIFGRATPVELDFSQVEKA 181 VSIFGR TPV+L F QVEK Sbjct: 297 LVSIFGRETPVDLSFDQVEKV 317 >UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 Tax=SAR11 cluster RepID=Q1UZH8_PELUB Length = 176 Score = 168 bits (426), Expect = 8e-41, Method: Composition-based stats. Identities = 80/175 (45%), Positives = 126/175 (72%), Gaps = 1/175 (0%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K WY+VQ+ S FE +VA ++E + + D E++VPT +V E++ G+R + ++K+FP Sbjct: 2 KNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYVL++ M++ +HL++++ RV GF+G P P+SDKE++ I+ +++ +P+ Sbjct: 62 GYVLIKSEMDNDLYHLIKNLKRVSGFLGSKG-IPVPVSDKEIEKILGQIKDGVAQPKSGI 120 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE V+V DGPFA F+G+VE++D EKSRLKVSVSIFGR TPV+L+++QVEKA Sbjct: 121 EYSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEKA 175 >UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 Tax=Chlorobiaceae RepID=B3QYK9_CHLT3 Length = 203 Score = 168 bits (425), Expect = 9e-41, Method: Composition-based stats. Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY V+ +SG E +V L + I + D +V +P E VE++ G+++ + FPG Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YVL++ V++ + +LV P V+GF+G D P P+ EV ++ Q++ K K Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLG-VGDEPTPLRPDEVKRLLEPEQEIERKMVTKAP 147 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 FE G V++ DGPF GV++EV+ EK ++KV ++ FGR+TP E+DFSQV+ Sbjct: 148 FEVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVK 199 >UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 Tax=Verrucomicrobiaceae RepID=B2UQY7_AKKM8 Length = 189 Score = 168 bits (425), Expect = 9e-41, Method: Composition-based stats. Identities = 70/185 (37%), Positives = 101/185 (54%), Gaps = 8/185 (4%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 P ++WYV+ SG E V + K + D V VPTE + E+R G++ + K Sbjct: 6 EPHEQWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSK 65 Query: 64 FFPGYVLVQM-------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ 116 FPGYV M +N W+ ++ + V+ G + P P+ +EV+ ++ L Sbjct: 66 LFPGYVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSR-NAPLPMRKREVEDLLPLLD 124 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 RPK F G+ VRV +GPF G +EE+D EK +L+VSVSIFGRATPV+L++ Sbjct: 125 AEAVAARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYW 184 Query: 177 QVEKA 181 QVEKA Sbjct: 185 QVEKA 189 >UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 Tax=Sphingomonadales RepID=C8WBL1_ZYMMN Length = 179 Score = 168 bits (425), Expect = 9e-41, Method: Composition-based stats. Identities = 84/178 (47%), Positives = 124/178 (69%), Gaps = 4/178 (2%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 RWY++ A+SGFE +V ++ + ++ L + VPTE+ VE+R G++ ERK FP Sbjct: 2 SRWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCFP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG---DKPR 123 GYVL ++ MN+ +HLV++ P+V GF+G + +P PISD E + I+N + K + Sbjct: 62 GYVLAKLNMNEDVYHLVKNTPKVTGFLGFSG-KPQPISDAEAEHILNHKAEAEVAGKKAQ 120 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 K FE G+ V+V +GPFA FNGVVE++D++++R+KVSVSIFGRATPVEL+F QVE+A Sbjct: 121 IKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVERA 178 >UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 Tax=Rickettsia RepID=NUSG_RICBR Length = 190 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 79/179 (44%), Positives = 113/179 (63%), Gaps = 3/179 (1%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 SE K+WYV+ SG E R+ + E I M D F +++VP V E++ + K E Sbjct: 13 SEKDTKKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVE 72 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 +K P Y+L++M M D SWHLV+++P V GF+G + P +++ E+ I L+ + Sbjct: 73 KKLMPSYILIKMNMTDKSWHLVKNIPGVTGFLGSKTT-PKALTESEIQNIR--LETEAKE 129 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + L+E GE+V V +GPF F G VEEVD EK+RLKVSVSIFG+ATP+EL F+QV+K Sbjct: 130 AKDAKLYEVGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188 >UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B1ZPC3_OPITP Length = 192 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 70/183 (38%), Positives = 108/183 (59%), Gaps = 9/183 (4%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 +W+ + SG E +V + + K ++D EV++PTE V E++GG++ RK Sbjct: 9 ADAQWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKL 68 Query: 65 FPGYVLVQMVM-------NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 +PGYV +QM + + W+ V+ V V+GF+G DRPA + E+D I R++ Sbjct: 69 YPGYVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG--GDRPAALRQSEIDEIRARIEA 126 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 K PK + GE V++ DG FA G ++E+D E+ +LKVSVSIFGR TPVEL++ Q Sbjct: 127 ANGKEVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQ 186 Query: 178 VEK 180 V++ Sbjct: 187 VQR 189 >UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5P4_9PLAN Length = 267 Score = 167 bits (423), Expect = 2e-40, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 105/180 (58%), Gaps = 5/180 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRKSERKF 64 K WY+++ E + SL I ++ +E F +V+VPTE+V E + G+RR ++K Sbjct: 89 KFEWYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKI 148 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN---RLQQVGDK 121 +PGY+LV MV ND +W +VR + F G +P P+ K+V+ I+ L++ ++ Sbjct: 149 YPGYILVNMVFNDETWFIVRETSGIGDFTGAMG-KPTPMDPKDVERILRSSKMLEEDTNQ 207 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 R F+ G+ VRV +G F +F G ++ +D R+ V ++IFGR+TPVEL+ Q+E Sbjct: 208 VRTAIPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267 >UniRef50_A6CA55 Transcription antitermination protein nusG n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CA55_9PLAN Length = 194 Score = 167 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 2/179 (1%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + K+ WYV++ S E + +L IK +E+ FGE+++PTE+VVE +GG++R ERK Sbjct: 17 SEKRLWYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERK 76 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP- 122 +PGY+++Q+ +ND SW+LVRS V F G +P P+ + E+ ++ R + + P Sbjct: 77 LYPGYLMIQVELNDDSWYLVRSTNGVGDFTGAAG-KPIPMQEHEIARMLGREESKEETPV 135 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + K F+ G++V+V D F F G ++ VD ++ V + IF R TP EL++ Q+EK Sbjct: 136 KIKLDFQVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194 >UniRef50_C4LL90 Transcription antitermination protein nusG n=5 Tax=Corynebacterium RepID=C4LL90_CORK4 Length = 353 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 29/208 (13%) Query: 1 MSEAPK--KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR 58 M E K WY+VQ +SG+E +V T L + +++ EV+VP EE VE++ G+R+ Sbjct: 145 MRELKKLPGEWYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRK 204 Query: 59 KSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 + K PGYVL+++ ++DASW ++R P + F+G P P+ +EV + + Sbjct: 205 VVKHKLLPGYVLMRIELDDASWSVIRDTPGITSFVGNEG-HPTPVKIREVAKFLLPPETA 263 Query: 119 GDKP--------------------------RPKTLFEPGEMVRVNDGPFADFNGVVEEVD 152 K + K +E GE V V GPFA + + E+D Sbjct: 264 TQKAEQEGEEPAAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEID 323 Query: 153 YEKSRLKVSVSIFGRATPVELDFSQVEK 180 E S+LK VSIFGR TPVELDF QVEK Sbjct: 324 AENSKLKALVSIFGRETPVELDFDQVEK 351 >UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 Tax=Bacteria RepID=D0MHN6_RHOM4 Length = 186 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 79/185 (42%), Positives = 126/185 (68%), Gaps = 6/185 (3%) Query: 1 MSEAPK----KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ 56 M+E K ++WYV++ FSG E +V L I+ ++D G++++PTE V E+RGG+ Sbjct: 1 MTEEKKQEGVRKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGK 60 Query: 57 RRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ 116 +R ER FFPGY+L++ V++ HL+ ++P V+GF+G D+P P+ EV I+ ++ Sbjct: 61 KRTRERTFFPGYILIEAVLDRELQHLIANMPSVVGFLGS-GDQPTPLRPDEVRRILGKVD 119 Query: 117 QVGDK-PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 + + +P+ F+PG++VR+ +GPF +F GVVEEV +K +LKV VSIFGR TP+E+D+ Sbjct: 120 EAREMGEQPEIPFKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDY 179 Query: 176 SQVEK 180 QVE+ Sbjct: 180 LQVER 184 >UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 Tax=Spiroplasma citri RepID=Q14PQ9_SPICI Length = 217 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 11/184 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG E RV L + ++ NM+D+ ++ V E V +GG+ + E+ +PG Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRL---------Q 116 Y+ + M+MND +W++VR+ V GFIG G +P P++D+E ++++ Q Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 K FE + VR+ G F + G V ++D K V++ +FGR TP E++F Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211 Query: 177 QVEK 180 Q EK Sbjct: 212 QCEK 215 >UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=A4XLK3_CALS8 Length = 175 Score = 166 bits (421), Expect = 3e-40, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 115/180 (63%), Gaps = 6/180 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS+ + +WYVV + G+E +V +L + I+ N+ D ++ +PTE V EI+ G++ Sbjct: 1 MSDK-RAKWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVK 59 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E+K FP YVL++ VM++ W+ +R+V V GF+G +P P++D+E++A+ + ++ Sbjct: 60 EKKKFPSYVLIKAVMDNDIWYTIRNVRGVTGFVG-PESKPTPLTDEEIEAMGIKEEE--- 115 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 E G+ V++ GPFADF G V +++ E+ ++KV +++FGR TPVE D+ QVEK Sbjct: 116 -VVEVFDIEVGDNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174 >UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLA2_9ACTN Length = 184 Score = 165 bits (419), Expect = 5e-40, Method: Composition-based stats. Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 8/179 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS----ER 62 KRWYV+ +SG+E +V L ++ + ++D +V P E V E++ + E Sbjct: 3 KRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTKEV 62 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ---QVG 119 KF+PGYVLV+M ++D +W +VR+ P V GF+G +P+P+ +E + +M R Sbjct: 63 KFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDG-KPSPLRREEFNKMMRRSGGKADAT 121 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R T E G+ V V GP ADF+G+V EV+ E ++KV ++IFGR TPVEL Q+ Sbjct: 122 TLKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180 >UniRef50_P52852 Transcription antitermination protein nusG n=51 Tax=Bacteria RepID=NUSG_STRGB Length = 309 Score = 165 bits (417), Expect = 7e-40, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 14/185 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ ++G+E RV T+L N+ED + VP EEVV+I+ G R+ ++ PG Sbjct: 126 EWYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPG 185 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN------------RL 115 YVLV+M + + SW +VR+ P V GF+G D P P++ E+ ++ + Sbjct: 186 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYD-PYPLTLDEIVKMLAPEAEEKAARAEGKP 244 Query: 116 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 FE G V V DGPFA + E+ + ++K V IFG TPVEL F Sbjct: 245 APQRKVEVQVLDFEVGASVTVTDGPFATLQ-TINEIKSDSKKVKGLVEIFGWETPVELSF 303 Query: 176 SQVEK 180 Q++K Sbjct: 304 DQIQK 308 >UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RNN9_ACIFE Length = 191 Score = 165 bits (417), Expect = 9e-40, Method: Composition-based stats. Identities = 68/189 (35%), Positives = 110/189 (58%), Gaps = 13/189 (6%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 +K WYV+ +SG+E +V +L I ME+ +V+VP + V+ + +++ RK Sbjct: 2 ENQKHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARK 61 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK-- 121 FPGYVL++M+++D +W+ VR+ P V GF+G T +P P+SD+EV+ I+ + GDK Sbjct: 62 VFPGYVLIEMIVDDRTWYAVRNTPGVTGFVG-TGTKPIPLSDREVERILGAQPKEGDKAE 120 Query: 122 --------PRPKTLFEPG--EMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 P + G + VR+ F D G V E++ E+ ++KV V +FGR TP+ Sbjct: 121 AAGKAVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPI 180 Query: 172 ELDFSQVEK 180 E+ F+QVE Sbjct: 181 EVKFTQVEA 189 >UniRef50_A0Q872 Transcription antitermination protein nusG n=11 Tax=Francisella RepID=A0Q872_FRATN Length = 177 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 94/174 (54%), Positives = 133/174 (76%), Gaps = 3/174 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ SG+E RV L E+I++ +++ FG ++VPTE VVE++GGQ+RKSERK+FPGY Sbjct: 3 WYVVQVHSGYEKRVKAQLEENIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPGY 62 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ--QVGDKPRPKT 126 VL++ ++ +W+LV+SVPRV+ +G +P P+S EVD I+ ++ + +PR + Sbjct: 63 VLIEADLSTDAWNLVKSVPRVLTVVGSKG-KPIPLSKAEVDRILGFVEGSKSTVEPRLRK 121 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + GE+VRV +GPF DF GV+EEV+YEKSRL+V+VSIFGR+TPVEL+FSQVEK Sbjct: 122 SYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >UniRef50_B0S060 Transcription antitermination protein nusG n=5 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S060_FINM2 Length = 193 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 4/177 (2%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A + +WYVV +SG EG+V ++ + ++ D EV+VPTEE V GG ++ ERK Sbjct: 20 AKEGKWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERK 79 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV V+M + D SW+LVR+ V GF+G +P +S+KE+ + Q K Sbjct: 80 IFPGYVFVKMTITDVSWYLVRNTRGVTGFVG-PESKPVAVSEKEIQKFALKNQSYSKK-- 136 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V + G F+D G++EE++ EK+ KV +S+FGR T VE+ F +EK Sbjct: 137 -EIDVNVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEK 192 >UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 Tax=Actinobacteria (class) RepID=B0RIR6_CLAMS Length = 345 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 70/193 (36%), Positives = 104/193 (53%), Gaps = 17/193 (8%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + +WYV+ +++GFE RV +++ + NMED ++ VP E+VVEI+ GQR+ R Sbjct: 153 SKPGKWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRV 212 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL-------- 115 PGYVLV+M +N+ SW +VR P V GF+G + P P+ +E +++ L Sbjct: 213 RIPGYVLVRMALNEDSWSVVRHTPGVTGFVGNAHN-PTPLRFEEAFSMLKSLVEIKEVAQ 271 Query: 116 --------QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 Q + FE GE + + +G FA G + E+ E +L V VS+F R Sbjct: 272 VKGQPTKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFER 331 Query: 168 ATPVELDFSQVEK 180 TPVEL F QV K Sbjct: 332 ETPVELSFDQVTK 344 >UniRef50_C8NX40 Transcription antitermination protein nusG n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NX40_9CORY Length = 342 Score = 163 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 25/196 (12%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFPG 67 WY++Q++SG+E +V T+L I+ +E+ +V+VP E+V E + G+++ +RK PG Sbjct: 146 WYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLPG 205 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR------------- 114 YVLV+M +NDA+W +VR P V F+G + P+ ++V + Sbjct: 206 YVLVRMDLNDAAWSVVRETPGVTSFVGNEGNA-TPVKHRDVAKFLMPKAAPVDGEATASE 264 Query: 115 ----------LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 + + +KP F+ GE V + G A + + E+D E +++ VSI Sbjct: 265 ANTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSI 324 Query: 165 FGRATPVELDFSQVEK 180 FGR TPVEL Q+E+ Sbjct: 325 FGRETPVELTADQIER 340 >UniRef50_P68893 Transcription antitermination protein nusG n=32 Tax=Streptococcus RepID=NUSG_STRP1 Length = 179 Score = 163 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 106/180 (58%), Gaps = 6/180 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M ++ K W+V+Q +SG+E +V +L + + +NM D V +PT+ V + GQ ++ Sbjct: 1 MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEI 60 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD--RPAPISDKEVDAIMNRLQQV 118 E FPGYVLV+MVM D +W +VR+ P V GF+G + +P P+ ++E+ AI+ + Q Sbjct: 61 EENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQ- 119 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 T + G++V++ DG F G V E+ E +++K+ +++FG T E++ Q+ Sbjct: 120 -TIDVFDTNIKEGDVVQIIDGAFMGQEGRVVEI--ENNKVKLMLNMFGSETVAEVELYQI 176 >UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 Tax=Lactobacillales RepID=NUSG_LACLA Length = 185 Score = 162 bits (410), Expect = 5e-39, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 6/173 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+V+Q ++G+E +V L E +L+NM D V +PTE + G+ ++ E FPGY Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSD--RPAPISDKEVDAIMNRLQQVGDKPRPKT 126 VLV+M M D +W +VR+ P V GF+G + +P P+ ++E+ I+ + +V + Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ VR+ DG F+ F + E++ +K L ++V +FGRATPVELD Q+E Sbjct: 133 F--VGKRVRIVDGAFSGFEAPITEINGDK--LTLTVDMFGRATPVELDMHQIE 181 >UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 Tax=Clostridiales RepID=B6G0A9_9CLOT Length = 180 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 106/181 (58%), Gaps = 3/181 (1%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR-GGQRRK 59 MSE + +WYVV +SG E +V ++ + ME++ V+VPTE VVE G + Sbjct: 1 MSELQEAKWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKI 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 +RK +P YVL++M++ D SW++VR+ V GF+G +P P+S++EV A+ L Sbjct: 61 RQRKVYPSYVLIKMIITDESWYVVRNTKGVTGFVG-PGSKPVPLSEEEVIAMGIELPAQE 119 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 FEPG++V++ +G FA G VEEV+ EK +K+ IFGR +PV + +E Sbjct: 120 -VVGGDVDFEPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIE 178 Query: 180 K 180 K Sbjct: 179 K 179 >UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 Tax=Brachyspira RepID=C0QWX1_BRAHW Length = 195 Score = 162 bits (409), Expect = 6e-39, Method: Composition-based stats. Identities = 69/190 (36%), Positives = 107/190 (56%), Gaps = 10/190 (5%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +S+ +WY+V G+E +V + + K + M DL ++ +P+E V + G++ Sbjct: 5 ISDIKDYKWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSK 64 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGG-------TSDRPAPISDKEVDAIMN 113 E F+PGYVLV+MVMNDA+ +VR P V GFIG + P P+S+ +V I Sbjct: 65 EEFFYPGYVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFE 124 Query: 114 RLQQVGDK---PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + F+ GE V+V DGPF NG++E ++ +K R+ V + IFGR+TP Sbjct: 125 NREDKSKTGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTP 184 Query: 171 VELDFSQVEK 180 EL+FS+V+K Sbjct: 185 TELEFSKVKK 194 >UniRef50_C2KN14 Transcription antitermination protein nusG n=3 Tax=Mobiluncus RepID=C2KN14_9ACTO Length = 280 Score = 161 bits (408), Expect = 9e-39, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 101/190 (53%), Gaps = 18/190 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLH-NMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 RWYVV +S +E RV ++ + + + ME+ +V +P EE +E++ RRK R P Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP---- 122 GYVLV+M M + SW LV+ P V GF+G D P P++ +EV ++ K Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQD-PVPLTLQEVIDMLAPTAAQAAKATVTE 208 Query: 123 ------------RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + T FE G+ V + GPF + E+ + S+LKV V+IF R TP Sbjct: 209 DGQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETP 268 Query: 171 VELDFSQVEK 180 VEL+F QVEK Sbjct: 269 VELNFDQVEK 278 >UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B8E0K4_DICTD Length = 176 Score = 161 bits (408), Expect = 9e-39, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 108/177 (61%), Gaps = 3/177 (1%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + +W+VV +G E +V L +KL+++ED E++VP E+V+ ++GG++R +K Sbjct: 2 AEPKWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKV 61 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGY+ ++M+ ++ ++R+ V GF+G RP+ ++ +E I L+Q + RP Sbjct: 62 FPGYLFIRMIEDEDVIRMIRNTTGVTGFVGTPG-RPSTLNPQEEHWIRRFLEQ--KEIRP 118 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + + G+ V + GPF + G V+EV EK ++V +SIFGR TP E+D +QVEK Sbjct: 119 ELKVKKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEKT 175 >UniRef50_B3EL56 Transcription antitermination protein nusG n=8 Tax=Chlorobiaceae RepID=B3EL56_CHLPB Length = 193 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + RWY ++ +SG E +V + ++ +ED +V VP E+ VE+R G++R + Sbjct: 16 SRPRWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNA 75 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYVL++ +++ + +L+ +P VMGF+G +D P P+ EV+ I+ V + Sbjct: 76 FPGYVLIEAILDKQTKNLIMDIPSVMGFLG-VNDIPTPLRPDEVEKILEPESTVEQRSVV 134 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + F G+ V+V DGPF+ GVV +V E+ ++KV +S FGR+TP ELDFSQV+ Sbjct: 135 EAPFRVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVK 189 >UniRef50_P36265 Transcription antitermination protein nusG n=48 Tax=cellular organisms RepID=NUSG_SYNY3 Length = 205 Score = 159 bits (402), Expect = 4e-38, Method: Composition-based stats. Identities = 75/187 (40%), Positives = 108/187 (57%), Gaps = 13/187 (6%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG-GQRRKSERK 63 + W+ VQ SG E RV +L + I ++ D +V +P +V+IR G R + E K Sbjct: 19 SEGHWFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEK 78 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----------PAPISDKEVDAIMN 113 FPGYVL++M+M+D +W +V++ P V+ F+G R P P+S EV+ I Sbjct: 79 IFPGYVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFR 138 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 + + +P K E G+ + V GPF DF G V EV E+S+LK +SIFGR TPVEL Sbjct: 139 HVDE--QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVEL 196 Query: 174 DFSQVEK 180 +F+QVEK Sbjct: 197 EFTQVEK 203 >UniRef50_A7BC06 Transcription antitermination protein nusG n=2 Tax=Actinomyces RepID=A7BC06_9ACTO Length = 256 Score = 159 bits (402), Expect = 5e-38, Method: Composition-based stats. Identities = 70/182 (38%), Positives = 97/182 (53%), Gaps = 11/182 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +SG E +V +L + I NMED V VP E V+E RG +++ PGY Sbjct: 73 WYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHVRIPGY 132 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRL----------QQV 118 +V M N+AS+ +V+ P V GF+G + P P+S EV ++ Q Sbjct: 133 AIVCMDFNEASYRVVKETPAVTGFVGDQHN-PVPLSIDEVVMLLTPNVLEEAAEAAKDQP 191 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +T FE GE+V V DGPF + + E+ E +LKV V+IF R TP+EL F QV Sbjct: 192 APVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELGFDQV 251 Query: 179 EK 180 EK Sbjct: 252 EK 253 >UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLI3_9PLAN Length = 294 Score = 158 bits (401), Expect = 6e-38, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+++ S E + +L +K+ +E F EVMVPTE++VE + G+++ ++RK +PGY Sbjct: 120 WYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYPGY 179 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK--- 125 ++V M +ND +W LVR + F G RP P+ EV+ I +++ P Sbjct: 180 IVVHMAINDDTWFLVRETGGIGDFTGAAG-RPTPMLAHEVERITKKVEDEETGEEPVKTN 238 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F+ G+ VR+ +G F +F G VE +D R+ V ++IFGR TPVE++ Q+E Sbjct: 239 IRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294 >UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYQ7_9FIRM Length = 198 Score = 158 bits (399), Expect = 9e-38, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 7/174 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 RWYVV +SG E +V ++ + ++ M DL ++ +PTEE VEI+ GQR+ + K F Sbjct: 31 ARWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFI 90 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+L++M + + SW++VR+ V GF+G +P P++ +EV + +K Sbjct: 91 GYILIKMKVTNESWYVVRNTQGVTGFVG-QGKKPVPLTAEEVRRL------GIEKVIVNL 143 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PG+ ++V +GPF NG V EVD E L+ + +FGR TPV+L++ Q++K Sbjct: 144 KIKPGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIFMFGRETPVDLEYEQIDK 197 >UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6N2_GEMAT Length = 181 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 108/178 (60%), Gaps = 5/178 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIK---LHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + RWY +Q SG E +V ++ I + L + +VPT++VVEI+ G++ ER Sbjct: 3 EHRWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVER 62 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K FPGYVLV+MV + + H + ++ V+ F+G D P P+ D EV ++ + + P Sbjct: 63 KIFPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKD-PMPLRDDEVRRLLGQADPADETP 121 Query: 123 -RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 R + F G+ V + +GPFADFNG VEE+ +K +++VSVS+FGR T VELD+ Q+ Sbjct: 122 VREEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179 >UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 Tax=Anaerococcus RepID=C7RDB1_ANAPD Length = 207 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 6/176 (3%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 RWYVV ++G+E RV ++ I D EV VPTEE VE++ ++ RK Sbjct: 36 KENARWYVVHTYTGYENRVNDKIQMMIDNEQNPD-ILEVTVPTEEYVEVKNDTKKVKTRK 94 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV+V+M + + SW+++R+ V GF+G +P ++ EV + P Sbjct: 95 LFPGYVMVKMNITNKSWYIIRNTQGVTGFVG-PDGKPVALTPAEVRKF----GVKDEAPI 149 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ V + GPF F VEEVD EK +K V +FGR T ++LDF+ +E Sbjct: 150 LNINVNVGDDVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIE 205 >UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 Tax=Tropheryma whipplei str. Twist RepID=Q83MQ7_TROWT Length = 217 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 70/181 (38%), Positives = 98/181 (54%), Gaps = 9/181 (4%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYVV + +GFE R +L + N + +V VP E+VV IR GQR+ R PG Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN--------RLQQVG 119 YVLV+M +N++SW +VR+ P + GF+G +P P+S +EV ++ +Q Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNM-HQPVPLSFEEVFDMLKTTVSVSQTAARQKR 154 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 E GE V + G FA G + E+ E RL V +S+F R TPVEL F QVE Sbjct: 155 SVTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVE 214 Query: 180 K 180 K Sbjct: 215 K 215 >UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 Tax=Synechococcus RepID=Q2JTQ7_SYNJA Length = 223 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 70/184 (38%), Positives = 103/184 (55%), Gaps = 13/184 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFP 66 RWY VQ SG E +V ++L + ++ D EV++P ++ R G+R++ E K FP Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR----------PAPISDKEVDAIMNRLQ 116 GYVLV+M +ND +W +V++ P V+ F+G R P P+S EV I + ++ Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + K PG+ + V GPF F G V +V E+ +LK +SIFGR TPVEL+F Sbjct: 160 VE--EVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFG 217 Query: 177 QVEK 180 QV K Sbjct: 218 QVRK 221 >UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 Tax=Epsilonproteobacteria RepID=NUSG_HELPJ Length = 176 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 113/173 (65%), Gaps = 3/173 (1%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFFPG 67 WY +Q +SG E V ++ H++ D E++VPTE+++E+ + + + ER +PG Sbjct: 4 WYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSLYPG 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV +++ ++ WH ++S+PRV FIG + +P P+S+ ++ I+ ++ P+PK Sbjct: 64 YVFIKVDLDTVLWHKIQSLPRVSRFIG-ENKKPTPLSEADIGHILEKM-NNRAAPKPKIF 121 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE GE+VRV +GPFA+F VEE D E +LK++VSIFGR TP+E+ +SQVEK Sbjct: 122 FEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEK 174 >UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQP9_9FIRM Length = 206 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 4/173 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 RWYV+ +SG+E +V +L + M+D ++++P + E++ G+++ R Sbjct: 30 SEKDIRWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSR 89 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 K FPGY+L+QM +ND SW++VR+ P V GF+G T+ +P P+SD+E I+ + K Sbjct: 90 KVFPGYLLIQMEVNDRSWYVVRNTPGVTGFVG-TTTKPIPLSDEEAKRII---EGKDKKQ 145 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 KT + G+ +++ GPFAD + VV +V ++S++K +S FG T +EL+ Sbjct: 146 TAKTDAKVGDTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELEV 198 >UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 Tax=Acholeplasmataceae RepID=B1VAN1_PHYAS Length = 204 Score = 153 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 6/181 (3%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG-GQRRKS 60 +EAP+ RWY+ Q + G+E V L ++ + +L V+ P E E R G++ Sbjct: 24 TEAPQFRWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSK 83 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTS--DRPAPISDKEVDAIMNRLQQV 118 ER +PGYV ++M++ D SW +V++ PR+ GF+G + +P P+S+KE++ ++ ++ + Sbjct: 84 ERNLYPGYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKMGIM 143 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 +P G+ V + G A+ V +D ++ ++ V V +FGR PVE+ FS Sbjct: 144 S---KPNYDHLIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDF 200 Query: 179 E 179 + Sbjct: 201 K 201 >UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCJ0_9DELT Length = 176 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 73/172 (42%), Positives = 114/172 (66%), Gaps = 5/172 (2%) Query: 12 VQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLV 71 + FSG+E V SL + IK + +E+ F +++VP+E+V+E RG ++ K RKFFPGY+ V Sbjct: 1 MNTFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFV 60 Query: 72 QMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ----VGDKPRPKTL 127 +M + +WHLV++ P+V GF+ + P P+S +E+D ++ + + + P Sbjct: 61 RMRLTKPAWHLVKNTPKVSGFL-SSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDID 119 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ VRV G FA+F+G VEEV+ EK ++K+SVSIFGR T VE+DFS+VE Sbjct: 120 YSVGDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171 >UniRef50_A5TS63 Transcription antitermination protein nusG n=10 Tax=Fusobacterium RepID=A5TS63_FUSNP Length = 193 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 66/194 (34%), Positives = 101/194 (52%), Gaps = 14/194 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS ++W+++ +SG+E +V T L + ++ ++ ++VP EE+ EI G+ +K Sbjct: 1 MSVENVRKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKI 60 Query: 61 ERKFFPGYVLVQMVMNDAS-------------WHLVRSVPRVMGFIGGTSDRPAPISDKE 107 RK FP YV+++M W+ VR+ V GF+G SD P P+ ++E Sbjct: 61 YRKLFPAYVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSD-PIPMEEEE 119 Query: 108 VDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 V I N + K K F G+ V++ G F D G V E+D E R+KV V IFGR Sbjct: 120 VKNIFNIIGVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGR 179 Query: 168 ATPVELDFSQVEKA 181 TPVE++ V K Sbjct: 180 MTPVEIEVDGVLKV 193 >UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S1Q0_SALRD Length = 185 Score = 152 bits (383), Expect = 7e-36, Method: Composition-based stats. Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 3/182 (1%) Query: 1 MSEAPKK-RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M+E + WYV++ FS E +V L I+ +ED E+++PTE V E++GG+++ Sbjct: 1 MAEDTETDTWYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKT 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFI-GGTSDRPAPISDKEVDAIMNRLQQV 118 E+ FFPGY+L+ + L +P V+GF+ GT D P + ++E+ I+ ++ + Sbjct: 61 KEKTFFPGYILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRA 120 Query: 119 GDK-PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + +P+ F+ G+ V+V DGPF FNG+VE+V ++ ++KV VSIFGR TPVELD+ Q Sbjct: 121 EEMGEQPEMPFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQ 180 Query: 178 VE 179 VE Sbjct: 181 VE 182 >UniRef50_C7NC81 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=C7NC81_LEPBD Length = 207 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 110/191 (57%), Gaps = 17/191 (8%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +K+WY++ +SG+E +VA L + I+ ++ D ++VP EEV+E + G++ K RK F Sbjct: 15 EKKWYIIHTYSGYEKKVAADLEKRIESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 66 PGYVLVQM-------------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM 112 P YV+++M ++ +W+++R+ V GF+G SD P P+SD+E ++ Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSD-PIPLSDEEASNLL 133 Query: 113 NRLQ---QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 ++ + PR F+ GE+V V G F G + E+DYE ++KV + + GR T Sbjct: 134 AKIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLT 193 Query: 170 PVELDFSQVEK 180 PVE++ +++ K Sbjct: 194 PVEVEHTEIAK 204 >UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q133_9BACT Length = 182 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 71/179 (39%), Positives = 114/179 (63%), Gaps = 7/179 (3%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+V++ S E +V +L E I+ ME L V+VP+E++ E++GG++R S+RK +P Sbjct: 3 KEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKIYP 62 Query: 67 GYVLVQMV------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 GY++V++ + W +R FIGG S +P P++ EV+ +++ L Q + Sbjct: 63 GYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQS-KPVPMTKYEVEKLLSDLDQKEE 121 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +PR K F GE VR+ +GPF +++G+VEEV R+KV +++FGRATPVEL++ QVE Sbjct: 122 RPRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVE 180 >UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQP0_FIBSS Length = 179 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY V F+G E + L + I+ ++D FG ++VPT EVV G+RR S + FP Sbjct: 4 QWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNLFPA 63 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGF--IGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 Y++++M +++ + HLV ++ V F + S P P+ EVD ++ + + + Sbjct: 64 YIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEGEIQ 123 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE V + +GPF F GVV+E+ K +KV VS+FGR+TPVEL F+QVE A Sbjct: 124 IPYTIGENVCIKEGPFKGFVGVVDEIMEAK--IKVMVSVFGRSTPVELAFNQVESA 177 >UniRef50_O83264 Transcription antitermination protein nusG n=4 Tax=Treponema RepID=NUSG_TREPA Length = 185 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 69/182 (37%), Positives = 112/182 (61%), Gaps = 8/182 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNME-DLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K WY++ FSG E RV ++R ++ + ++ ++ +P E + E++ G++R RKFF Sbjct: 3 KEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRKFF 62 Query: 66 PGYVLVQMVMNDASWHLV----RSVPRVMGFIGGTSD-RPAPISDKEVDAIMNRLQQ--V 118 PGY+LV+M + + W +V R +P V GF+G + + +P +S E I+ + + Sbjct: 63 PGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEIKG 122 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 PR F G+ VR+ +GPFA F+G VEEV E+++++V+V+IFGRATPVEL+ QV Sbjct: 123 DRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELVQV 182 Query: 179 EK 180 E Sbjct: 183 EA 184 >UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 Tax=Bacteroidetes RepID=C7PUF8_CHIPD Length = 196 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 110/180 (61%), Gaps = 6/180 (3%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 +WYV++ SG E +V L ++ + ++ ++ +P E+V +++ G++ E+ F Sbjct: 17 QDTKWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNF 76 Query: 65 FPGYVLVQMV---MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV-GD 120 +PGYV+++ + M D +R+V V+ F+G D+P + EV+ ++ ++ ++ + Sbjct: 77 YPGYVMIEAIDGKMTDEVIQSIRNVSGVIHFLGK--DKPIALRKAEVNKMLGKVDEMSDN 134 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE +++ DGPF DFNG++EEV +K +LKV+V IFGRATPVEL+F QVEK Sbjct: 135 GLTMSEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEK 194 >UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETZ5_AMOA5 Length = 186 Score = 147 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 109/183 (59%), Gaps = 6/183 (3%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 +WYV++ SG E V L ++ ++D ++++P+E++ E+R G+R+ ER Sbjct: 2 KTDPKWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERN 61 Query: 64 FFPGYVLVQMVMND-ASWHLVRSVPRVMGFIGGTS----DRPAPISDKEVDAIMNRLQQV 118 FFPGY+++ ++D H ++ +P +GF+G +P P+ +KE++ I+ R+ ++ Sbjct: 62 FFPGYLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEI 121 Query: 119 GDKPR-PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + + F GE V++ DGPF+ F G ++EV E+ +L V V IF R TP+EL ++Q Sbjct: 122 AEDDNGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQ 181 Query: 178 VEK 180 VEK Sbjct: 182 VEK 184 >UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 Tax=Rhodopirellula baltica RepID=Q7UMY8_RHOBA Length = 225 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 63/183 (34%), Positives = 106/183 (57%), Gaps = 5/183 (2%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEV-VEIRGGQRRK 59 + + WY+++ E +A +LR+ +++ +M + FG+++VP+E+V R G+RR Sbjct: 42 VDDESPMDWYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRV 101 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR---LQ 116 S+RK PGY++V M +ND +W LVR V + F G +P P+ ++V+ +NR Sbjct: 102 SKRKLLPGYIMVYMSINDDTWFLVREVGGISDFTGSAG-KPQPMEPEDVERFINRPAVDD 160 Query: 117 QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + + F+ G+ VRV +G F + G V+ VD R+ V ++IFGR+ P+ELD Sbjct: 161 EDETPIKTAIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHW 220 Query: 177 QVE 179 QVE Sbjct: 221 QVE 223 >UniRef50_C0W699 Transcription antitermination protein nusG n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W699_9ACTO Length = 263 Score = 145 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 30/208 (14%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG-GQRRK 59 MS P WYV+ +SG+E RVA + + +ED + +VP E V+E++ G++++ Sbjct: 57 MSSLP-GEWYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKE 115 Query: 60 SERKFFPGYVLVQMVMND-----ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR 114 R PGYV V+M ++D W ++ P V GF+G + P P++ E + + Sbjct: 116 VSRVRIPGYVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYN-PVPLTFDEAVSQLGP 174 Query: 115 LQQVGDKP----------------------RPKTLFEPGEMVRVNDGPFADFNGVVEEVD 152 + + FE GE V V DGPF + E+ Sbjct: 175 TPEEVAAKQAAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISEIH 234 Query: 153 YEKSRLKVSVSIFGRATPVELDFSQVEK 180 E +L+V +S+FGR TP EL F+QV K Sbjct: 235 PETQKLQVLISLFGRDTPAELSFTQVAK 262 >UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 Tax=Anaplasmataceae RepID=B9KHV6_ANAMF Length = 188 Score = 145 bits (365), Expect = 9e-34, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 2/182 (1%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 + WY+VQ SG E +VA + E + M +F EV +P EEV +++ ++ Sbjct: 5 HDDSGHEWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMR 64 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ--VG 119 RK PGYV + M ++D + + VR VP+V F+ + P I E++ + + + + Sbjct: 65 RKLSPGYVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSS 124 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + FE G+ V +NDG F DFNG VE V+ +K VSV IFGR T +E S ++ Sbjct: 125 EAASEVCSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQ 184 Query: 180 KA 181 K Sbjct: 185 KV 186 >UniRef50_B0A697 Transcription antitermination protein nusG n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A697_9CLOT Length = 179 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 113/181 (62%), Gaps = 6/181 (3%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE-IRGGQRRK 59 MSE + +WYVV +SG E +V ++ +K MED +V+VPTE+V+E + G+ + Sbjct: 1 MSEIQEAKWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKV 60 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 +RK +P YVL+QM++ D SW++VR+ V GF+G +P P+S++EV ++ L ++G Sbjct: 61 RQRKIYPSYVLIQMIITDESWYIVRNTKGVTGFVG-PGSKPVPLSEEEVKSMGIDLDKIG 119 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF-GRATPVELDFSQV 178 +K +T E GE+V V DG F +GVV+E+D + ++K+SV+ +ELD + Sbjct: 120 EK---RTEIEVGEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSI 176 Query: 179 E 179 E Sbjct: 177 E 177 >UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 Tax=Wolbachia RepID=Q5GRY4_WOLTR Length = 278 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 5/182 (2%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSE 61 E K +WY+++ S +E +V + E+ + D F EV +P EE+ E+ ++ Sbjct: 95 EFNKYKWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMR 154 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPR---VMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 RK FPGYV + + + D + V ++P+ V GF+ P ISD E+ ++ N L Sbjct: 155 RKCFPGYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKN-GSVPKVISDDEIYSMCNALYNA 213 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + +E GE V++NDG F +F G V+ ++ EK + + VSI G+ T +ELD +QV Sbjct: 214 QETKKLSHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQV 273 Query: 179 EK 180 EK Sbjct: 274 EK 275 Score = 42.3 bits (98), Expect = 0.008, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 17/115 (14%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + +WY+++ G E + + + F EV +P + V + + E Sbjct: 4 EHKWYIIKVNYGHERNILELVSNAV-------YFKEVFIPYQTVCNSKSDIKEVCE---- 52 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 V V M + D S ++ +GF G S + D+EV+ + Sbjct: 53 ---VYVCMYLCDESRDILSKT---LGFHSGDSSNFKIVLDEEVNLKRKEFNKYKW 101 >UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 Tax=Selenomonas RepID=C4V5M2_9FIRM Length = 183 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 103/176 (58%), Gaps = 7/176 (3%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 P + WYV+ +SG+E +V +L + +M ++ +V+VP E +E++ G+ + RK Sbjct: 13 NPHRAWYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRK 72 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYVLV M++++ SW++VR+ V GF+G P P++ +E + I++ VG +P+ Sbjct: 73 VFPGYVLVDMIVDEHSWYVVRNTTGVTGFVGSE-KHPIPLTAEEAERILS--GSVGAEPK 129 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 +T G+ VR+ G F D+ G + +D +KV V G++ VE+D QVE Sbjct: 130 RRTKVNVGDTVRITSGAFEDYAGKITSIDMSSMGVKVDVD--GKSLDVEID--QVE 181 >UniRef50_O51355 Transcription antitermination protein nusG n=22 Tax=Borrelia RepID=NUSG_BORBU Length = 184 Score = 141 bits (356), Expect = 8e-33, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 7/179 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +S +E ++ +R I + +V P E+V EIR G++R ERK +PGY Sbjct: 5 WYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKIWPGY 64 Query: 69 VLVQMVMNDASW----HLVRSVPRVMGFIG-GTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 +L+++ + + W + V V+ F+G RP PI+D+EV ++ ++ Sbjct: 65 ILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIKANKS 124 Query: 124 PKT--LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 FE GE VR+ GPF F G++ +DYE+ +LKV+V IFGR+TPVE+DF +EK Sbjct: 125 IFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQHIEK 183 >UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC6_9BACT Length = 177 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 95/174 (54%), Gaps = 4/174 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WYV+ +SG E +V T++ + + +E G ++VP + IR G++ + ++K F Sbjct: 2 KWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFTS 61 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 YV+++ M + + V F+G P P+S +EVD ++ D Sbjct: 62 YVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVYS 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + PG+MV+V GPF DF G+V++ ++L + V++FGR TPVEL+ SQVE Sbjct: 122 --YMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVE 173 >UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WZX9_RHOS5 Length = 174 Score = 137 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 12/177 (6%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 WY+VQ I N+ V PT+ + G + R + ++ Sbjct: 9 DTAPWYLVQTKPNA---------FRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQL 59 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGY+ V+ W + + V + + P+P+ + + R G P Sbjct: 60 FPGYLFVRFNPEFPQWRAINATYGVSRLVTF-GNIPSPVPHALIAGLRQRCANDGTLLPP 118 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ VR+ GPFAD+ VE+++ +K R+ + + I G T ++ + ++KA Sbjct: 119 EQ-LSLGDRVRIISGPFADYVATVEQIEPDK-RVWILLDILGGQTKTQIQIAALQKA 173 >UniRef50_A6FV14 Transcription antitermination protein nusG n=2 Tax=Rhodobacteraceae RepID=A6FV14_9RHOB Length = 177 Score = 136 bits (342), Expect = 4e-31, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 12/178 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M+ + RWY+VQ I N++ + +P ++V R G+ + Sbjct: 1 MTLEAQIRWYLVQFKPNS---------HKIAARNLQRQSFQTFLPMQDVTRRRAGKFHTA 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 + FPGY+ V + W + + V + RP P+ D V+A++ R G Sbjct: 52 PQPLFPGYMFVSLDTIRGPWRQINATLGVSKLVSVAG-RPQPVPDTLVNALLERCDDDGK 110 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 P+T F PGE V + GPFA F VE++ ++ R+ V + G+AT +++D + Sbjct: 111 LLPPET-FSPGEQVTLRSGPFASFVATVEKMQPDR-RVWVLLEFMGQATRIQVDADIL 166 >UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFX3_MYCFE Length = 205 Score = 135 bits (341), Expect = 5e-31, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 19/194 (9%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLF--------------GEVMVPTEEVV 50 +WY++ SG E +V +L+ I +ED F + P E Sbjct: 7 KNFQWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEK 66 Query: 51 EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEV 108 + G + + + GY+ + M M D +W +VR+ V G IG G +P P+S ++ Sbjct: 67 QKNGEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQI 126 Query: 109 DAIMNR---LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 D + LQ+ DK T F+ GE+V + DGPF G V E ++ V + Sbjct: 127 DKSFKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYL 186 Query: 166 GRATPVELDFSQVE 179 G+ TP + ++ +++ Sbjct: 187 GKKTPADFEYKEIK 200 >UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZB7_HALHL Length = 175 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 12/173 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+V + E R N++ +P R + + FP Y Sbjct: 15 WYLVYSKPRQEERA---------WWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRY 65 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + +++ W +RS V G + PA + D VD I R++ P+ Sbjct: 66 LFIRLAAGLEDWSPIRSTTGVSGLVRF-GTWPARVPDGLVDTIRARIEDGHCDLAPEP-L 123 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +PGE VRV DGPF + G+ R+ + + + G+ T + + Q+E+A Sbjct: 124 QPGERVRVLDGPFQSYEGIF-RASRSDERVMILLDVAGQHTTLTVSQHQIERA 175 >UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIE4_EGGLE Length = 170 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 5/173 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV Q +G E R + MED +P EV+ G+ R +R FPGY Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPSVMED----CFMPEYEVMWKIRGEWRLVKRLLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + +A + VP + +G + P++ KE D ++ + R + Sbjct: 58 LFFVTDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMD-GNHTVRMSEGY 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ + V GP F G + ++D K R + VS+FGR P + V K+ Sbjct: 117 ISGDKITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRKS 169 >UniRef50_A3WUF1 Transcriptional antitermination protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF1_9BRAD Length = 170 Score = 135 bits (340), Expect = 7e-31, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 13/182 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M+ + + +WYVVQ EG+ A LR EV +P + + Sbjct: 1 MTASGQ-QWYVVQTHPHAEGKAAAHLRR---------QGFEVYLPRYARRRRHARRVDIT 50 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FP Y+ V + + W +RS V + + D PAP+ D V + R G Sbjct: 51 ASPLFPRYLFVAIDLVHQRWRAIRSTVGVTNLV-YSGDEPAPVPDDVVRRLKQREDSKGC 109 Query: 121 -KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + F G+ VRV DG F+D G+ E + + R+ V + + GR V +D +E Sbjct: 110 VQLDLAPRFSAGDTVRVVDGAFSDCLGLFESM-SDGERVLVLLDLLGRKVRVTMDIDTIE 168 Query: 180 KA 181 A Sbjct: 169 AA 170 >UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella burnetii RepID=A9ND88_COXBR Length = 167 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 14/178 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS WY++ E I N+E + +P +V R G + Sbjct: 1 MSTDSD--WYLIYTKPRQE---------RIAEENLERQGYRIYLPFIQVNRRRLGCYQLI 49 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FP Y+ + + ++ +W +RS V + PA + V + + Sbjct: 50 TEPLFPRYLFILLNIDKDNWGPIRSTRGVSALVRF-GGIPAKVPPDFVQ-FLKNNETSAS 107 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 P +LF+ G+ V++ DG A + GV E K R+ + + + G+ T VE+ V Sbjct: 108 VPPKVSLFQKGQRVQIIDGVMAGYEGVFEMYSGAK-RVTLLLDMVGKVTRVEVPLDSV 164 >UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=Q4A951_MYCHJ Length = 190 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 10/184 (5%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVM---VPTEEVVEIRGGQRRKSERKF 64 +WY++ S E + L+ IK N+E+ F E+ VP E + G+++ R Sbjct: 5 KWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYRNL 64 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIM----NRLQQV 118 + GY ++M M D +W +VR+ V G +G G +P PIS ++ + + ++ Sbjct: 65 YKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQILNF 124 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS-IFGRATPVELDFSQ 177 +E G+ V+V GPF+D G + E++ K+ + V + +FGR TP ++ Sbjct: 125 QQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEYKN 184 Query: 178 VEKA 181 ++K Sbjct: 185 LKKV 188 >UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6V9_DESAP Length = 173 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 11/174 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W V E A L EV +P V RG + FPG Sbjct: 4 QWCAVNTKPKKEDFAARQLEAK---------GLEVFLPRISVTRKRGASKFSLWEPLFPG 54 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD-KPRPKT 126 Y+ V+++ V P V + D P P+ D+ + I R+ G P+P+ Sbjct: 55 YLFVKLLPEPVQVQRVNWTPGVRRLLC-AGDTPVPVPDEAIALIRQRVGPGGRLTPKPQA 113 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G V V GPFA GVVE+ + R++V + + R T VE+D +++ Sbjct: 114 EFPAGSRVAVRHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDR 167 >UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP1_KANKD Length = 167 Score = 132 bits (332), Expect = 6e-30, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 14/181 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MSE +K WY++ + E R L+ + ++P EV I G+R+K+ Sbjct: 1 MSEC-EKSWYLINSKPKQELRALEHLK---------NQEINCVLPVLEVERIIRGKRQKA 50 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FPGY+ V++ N W +RS V F+ P + D ++ ++ + Sbjct: 51 IEPLFPGYLFVELQTNGQGWSKIRSTRGVRDFVRF-GGVPGRVPDSVLEHLL--ILDTSF 107 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P G+ V + DGPF D GV ++ + R V ++I G+ T +EL+ Q+ K Sbjct: 108 TPIETNAPGAGDKVIITDGPFKDLEGVF-KISNGEKRSIVLLTILGKVTEMELENKQLRK 166 Query: 181 A 181 A Sbjct: 167 A 167 >UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 Tax=Mollicutes RepID=Q2ST07_MYCCT Length = 214 Score = 132 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 25/198 (12%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 K +W+V+ +G E +V L++ IK ++ED + + V G + S + Sbjct: 15 EAKGQWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSG---KASIKN 71 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRLQQVGDK 121 FPGY+ + M+M++ +W L+R+ P V GFIG G +P+P++ +E ++ + + Sbjct: 72 KFPGYIFINMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQ 131 Query: 122 PR--------------------PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 F+ G++V+V G + G V+++DY K V+ Sbjct: 132 AHEEEKEQETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVA 191 Query: 162 VSIFGRATPVELDFSQVE 179 + +FGR T +E+ F VE Sbjct: 192 IEMFGRWTTLEVSFKNVE 209 >UniRef50_O84322 Transcription antitermination protein nusG n=14 Tax=Chlamydiales RepID=NUSG_CHLTR Length = 182 Score = 132 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 69/176 (39%), Positives = 106/176 (60%), Gaps = 3/176 (1%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYVVQ F+ E +V SL + + M D ++++P+E V+E++ G+ + E+ +P Sbjct: 2 FKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIWP 61 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+LV+M + D SW V+ V+ F+G P +S++EV I+ L++ K Sbjct: 62 GYLLVKMHLTDESWSYVKKTQGVVEFLG--GGAPVALSEEEVKNILADLEEKKSGVVQKH 119 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVEKA 181 FE G V++NDG F +F GVV EV ++K RL V VSIFGR T V +L+F QVE+ Sbjct: 120 KFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomonas RepID=Q48H23_PSE14 Length = 170 Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 16/179 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 A + RWY++Q E R LR + P + V + R +++ Sbjct: 4 SAQEARWYLIQTKPRQEARAEEHLRR---------QHFQCYRPLQ-VDVKKTAARVQADE 53 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGY+ +QM +W+ +RS V + P P+ D ++ I RL P Sbjct: 54 PLFPGYLFIQMDQVQDNWYPIRSTRGVSRIVTF-GGHPVPVRDHLIEQIRQRLS----TP 108 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 PK F G+ V + G ++D + D R + +++ R + L S + + Sbjct: 109 APKARFIQGDPVMITTGSWSDVEAIFLSED-GTERAVILLNMLQRQQKMGLPISSLSRV 166 >UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVW1_SYNAS Length = 167 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 12/174 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY V S E +V T L + +P EV R +R++ FPGY Sbjct: 3 WYAVHTRSRHEDKVFTGLVQKSIT---------TFLPKIEVWSKRKDRRKRIMTPLFPGY 53 Query: 69 VLVQMV-MNDASWHLVRSVPRVMGFIGG-TSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + V M +++ + V V+ +G T P P+ D ++DAI R+ + + Sbjct: 54 LFVDMPCLDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIR-RIVDSRVEVQNLQ 112 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GE R+ DGPF G V + DY+K V++ + R+ ++LD SQ+EK Sbjct: 113 YPHVGEAARIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEK 166 >UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVL5_CHRSD Length = 182 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 12/181 (6%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 A + RWYVVQ G R L + V P EV + R + Sbjct: 12 DTAARPRWYVVQCKGGESFRAGEHL---------TNQGYRVFHPVLEVQKKRRNKLVWIA 62 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP Y+ + + ++W +RS V+ +G D P P+ D ++ + R Sbjct: 63 EPLFPHYLFIHLDRVASNWRPIRSTRGVLKLVGF-GDEPLPVPDALIETLAARAHLDEAS 121 Query: 122 PRP-KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F PGE+V + +GPF V + R V +++ +EL + + Sbjct: 122 RTSGNAYFRPGEIVEITEGPFQALQAVFD-TQQGDERAIVLLNMLHHQQRLELPVGHLRR 180 Query: 181 A 181 + Sbjct: 181 S 181 >UniRef50_A5CC98 Transcription antitermination protein nusG n=2 Tax=Orientia tsutsugamushi RepID=A5CC98_ORITB Length = 184 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 102/173 (58%), Gaps = 2/173 (1%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY+++ SG E + ++ E + F E+++P +VV+++ G+ +K PG Sbjct: 10 QWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTMPG 68 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+L++M M D ++ V ++ F G S + +++KEV +M +L+ P Sbjct: 69 YILIKMDMIDQVKDFMQKVVKLNRFPGNES-KIVQVTEKEVQEMMVQLENKAQDPSFLEK 127 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 ++ GE VRVNDGPF F G +EEVDY K LK+S+SIF R+T + +DFSQVEK Sbjct: 128 YQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEK 180 >UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=B3PLY8_MYCA5 Length = 197 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 93/192 (48%), Gaps = 13/192 (6%) Query: 1 MSEAPKK-RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPT-------EEVVEI 52 M+ K +WY++ SG E V SL+ I +M++ F E+ + E + Sbjct: 3 MNNQDKAFKWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKS 62 Query: 53 RGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDA 110 +G + + + GY+ + M+M D +W+LVR+ V G IG G +P PIS + + Sbjct: 63 KGEEYKVKYLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEK 122 Query: 111 IMNR---LQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGR 167 ++ + L + +T+F+ G +V++ G F G + + + + V++ +GR Sbjct: 123 MVQKEIALAEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQYGR 182 Query: 168 ATPVELDFSQVE 179 P E+D + +E Sbjct: 183 KVPTEIDHADLE 194 >UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZE8_DESAS Length = 164 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 11/174 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ +G E V + ++E +VP +VE R G + ER FPG Sbjct: 2 HWYVIHCLTGHEEDVRSRVKEK--------DIARAVVPRRLMVERRQGGWQYVERVVFPG 53 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV VQ M A+++ +R++P V+ +G + RP P+ EV + + + Sbjct: 54 YVFVQAHMTPAAYYAMRNLPGVIRVLG--TSRPVPLMGNEVTLFLKLCRDGDPLGLSEV- 110 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 F G V+V GP G + ++D + R KV++S+ G VEL S ++K Sbjct: 111 FVKGGSVKVISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKKT 164 >UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXH4_STRM9 Length = 190 Score = 130 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 20/187 (10%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++ +SG+E +V T L + I ++ D ++VP E++ E + G+ RK FP Sbjct: 10 KKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIFP 69 Query: 67 GYVLVQM-------------VMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN 113 YVLV+M ++ +W+++R+ V GF+G SD P P+ +KEV+ I + Sbjct: 70 SYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSD-PLPMDEKEVEEIFS 128 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 ++ + K +E G+ V+ DG G VE +DY ++K+ + + R T + L Sbjct: 129 KMSNEDFQE--KLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTL 182 Query: 174 DFSQVEK 180 ++V K Sbjct: 183 GLNEVTK 189 >UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DDG1_LARHH Length = 172 Score = 129 bits (325), Expect = 4e-29, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 16/181 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 K WY+V E +L++ + +P ++R G+ SE Sbjct: 5 SEEKMHWYLVHTKPRQEQCALQNLQQ---------QGYQCYLPMLATEKLRQGRLVVSEE 55 Query: 63 KFFPGYVLVQMVM--NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FP Y+ +++ + +D SW +RS V + PA I D ++ + Sbjct: 56 ALFPRYLFIRLGLGQSDKSWAPIRSTRGVNQLVRF-GTEPARIDDGLIERLRGH---DAA 111 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + P+ LF GE VR+ DGPFA G+ + D E SR+ V + R + + K Sbjct: 112 RANPEPLFRTGERVRLTDGPFAGIEGIYQMTDGE-SRVMVLIEFLTRPVVARVAPGSLRK 170 Query: 181 A 181 Sbjct: 171 V 171 >UniRef50_C6PET8 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PET8_CLOTS Length = 187 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 4/177 (2%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 ++WYV+ +G E +V + N V++P ++E +G +R + + Sbjct: 2 EDGEKWYVIYTRTGDELKVKRLIELLFSKLN--KKPIRVLIPKRAIIERKGKKRVEKIKF 59 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV ++ M ++ + +P + F+ PA + D E+ I++ + Sbjct: 60 LFPGYVFIKTNMCFEIYYEISKLPHFLKFLKDE-MEPAEVRDDEIRIILSLVGDSD-IVG 117 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 T + G V++ DGP F G++E++D K R+KV +++ G A V+L VEK Sbjct: 118 FSTGIKIGGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEK 174 >UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobacter RepID=A6F1J5_9ALTE Length = 163 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY +Q R T L ++ P V +I+ G+R K FPGY Sbjct: 3 WYALQHKPSQGDRALTHL---------QNQDIACFYPKITVEKIKAGKRTKQLEPLFPGY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V + D W +RS ++ + ++PA I D + I + L + Sbjct: 54 LFVNLEQTDPMWAKLRSTRGILRIVSFA-NKPAAIPDDVIQHIKDSL----HTVAEQGGI 108 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 +PG+ V +++GPF + + D E R V +S + V++ S + + Sbjct: 109 KPGQAVELDEGPFKGIEAIFQAYDGE-ERAIVLISFMQKQQTVKVPLSTLHR 159 >UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitrosomonas europaea RepID=Q82X31_NITEU Length = 165 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 15/176 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WY+V E +L++ +P V ++ G + FP Sbjct: 2 HWYLVHTKPKQEKCAFQNLQQ---------QGYRCYLPMLPVEKLHLGNLTVVDEPLFPR 52 Query: 68 YVLVQMVMND--ASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 Y+ +Q+ D SW +RS V + PA I D +D + +Q+ + +P+ Sbjct: 53 YLFIQLEQGDSAKSWVPIRSTRGVNRLVCF-GSEPARIDDILIDLLR--MQEASFQHKPE 109 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 LF+PGE VR+ +G FA G + ++ + R+ V + + + + + + + K Sbjct: 110 RLFKPGERVRLTEGAFAGIEG-IYQMAEGERRVMVLIELLSKPVAMRVSPTSLRKT 164 >UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCF2_PSEPF Length = 178 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 13/178 (7%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + + WY++Q + R +L + V P + G+R++ + Sbjct: 5 SSDQPNWYLLQCKPRQDERAHLNLLQ---------QNYVVFHPQLVSERVIRGKRQRVQE 55 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGY+ +Q+ D +W +RS V F+ PA +++ ++ + R + Sbjct: 56 SLFPGYLFIQLSR-DDNWAPLRSTRGVSRFVEFNHG-PATVAEHVIEHLRARCLESTLS- 112 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 P +PGE +++ GP A GV + + R+ + + R PV L S +E+ Sbjct: 113 EPDEALKPGENLQIVSGPLAPLEGVFLGL-HGTDRVMILLQFLNREQPVCLPLSVIER 169 >UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACI7_ALHEH Length = 177 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 13/180 (7%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 ++E + R WY++ E +L +P VV+ RG +R Sbjct: 6 VTEQQEHRAWYLIYTKPRQEEAARDNL---------GRQGFHAWLPRVRVVKRRGTRRVP 56 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 FP Y+ V++ W + S V + PA + V A+ R + Sbjct: 57 VVEPMFPRYLFVELDSAYQDWSPISSTLGVTSLVRF-GGVPAKVPGPLVAALQARADEDD 115 Query: 120 -DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G+ VRV G FA + V + + R+ V + + G+ + V L + Sbjct: 116 ICDLSARQQPRAGDTVRVAHGAFAGYEAVFQ-ARSGRERVLVLLEVAGKQSRVTLPADDI 174 >UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A2_THETN Length = 179 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 10/177 (5%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 K WYVV + E RV + K + L + VP ++ R G+ ++ E K Sbjct: 11 KEKPLWYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEK 70 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGYV V+ VM +R + V F+GG + P PI+ +EV + Sbjct: 71 IFPGYVFVKAVMTPEVMAAIRRINGVAHFVGG-GNEPVPITPEEVKR-------ARIQDD 122 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F+ G+ V + DGPF +F G + ++ E ++ +++S+F R ++ Q+ K Sbjct: 123 LSEEFKAGDTVMITDGPFENFIGKIIKI--EGRKINIALSLFDREMGIDFSPEQIMK 177 >UniRef50_Q1Q029 Similar to transcription antitermination protein NusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q029_9BACT Length = 169 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E W+ V S E +V + LRE +P + + R +++ + Sbjct: 2 EKNVAYWFAVHTRSRHEKQVDSFLREKNISS---------FLPLVKTISRRRDRKKFIDV 52 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-RPAPISDKEVDAIMNRLQQVGDK 121 FPGY+ V + +++ + ++S V+ IG D P+PI D E++ + + Sbjct: 53 PLFPGYLFVNITLDN--LYEIKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLI-NSNVA 109 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 P + G VRV GP G++ + R+ VS+ I ++T E+ + +E Sbjct: 110 IDPYKYLQKGTKVRVVSGPLIGLEGLLVK-RKTNYRVVVSIDILQKSTSAEISIADIE 166 >UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIY4_SYNFM Length = 212 Score = 126 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 11/177 (6%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 K W+ + E V L + + +P E R +R++ Sbjct: 37 DTKSWFALYVQVKHEKEVVRRLDQKS---------IDCFLPLMECWSKRLDRRKRITLPL 87 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYV V V+++ + + P + + + P PI +++ + L Sbjct: 88 FPGYVFVHTVLDNYTNVNILKTPGALSILKNSEG-PLPIPVYQIENLQTIL-NSSKSLDL 145 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GE VRV GP + G+++ +K RL VSV ++ VELD VE Sbjct: 146 HPYLKEGEWVRVIRGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVEAT 202 >UniRef50_B5Y935 Transcription antitermination protein nusG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y935_COPPD Length = 182 Score = 126 bits (317), Expect = 3e-28, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 13/183 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR--KSERKF 64 K+WY+V G E VA +++ + +V+VP E +E RG + R + +R Sbjct: 2 KKWYIVTTVHGKESAVAEAIKLRAENAG-NTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60 Query: 65 FPGYVLVQMV-------MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 +PGYV V++ ++ +W L+R P V GFI P P+ D E++ ++ + ++ Sbjct: 61 YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQKSRE 120 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + K + G+ V V DG GVV +VD+EK ++ V +S+FGR +LD Q Sbjct: 121 ---QEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQ 177 Query: 178 VEK 180 V K Sbjct: 178 VRK 180 >UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WL22_EGGLE Length = 172 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 5/172 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ G E V + + + E+L E +P EV + G + PGY Sbjct: 4 WYVVQTVGGQEKHVLDLINKLVD----EELIQESFIPQYEVKKRIQGVWKMRSEVLLPGY 59 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V +RSVP+ +G D P+ D+EV I + + Sbjct: 60 IFVITDQPGKLREALRSVPKFTRLLGNN-DVFTPLDDQEVAFINAFTKPDHRVVEFSSGV 118 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G+ + + +GP + G+++++D K + + I GR V++ V K Sbjct: 119 MEGDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170 >UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RLT4_9MOLU Length = 173 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 5/174 (2%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+Q +G E ++ + + I +E E +P ++ G ++ + F G Sbjct: 4 NWYVIQVRTGKEEKIKNTCEKLISRDILE----ECFIPKCIRLKKYQGTWKEVDEVLFKG 59 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV + D ++ ++ +P + +G + PI +E + + + Sbjct: 60 YVFMISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEE-AIFLLKFGKEKHIVDLSQG 118 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ + + GP + G+++++D K + V +F + T V++ + K+ Sbjct: 119 YIEGDKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGKS 172 >UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIA3_EGGLE Length = 170 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 5/172 (2%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +G E V + ++ +D+ E VP EV + GQ R FPGY Sbjct: 2 WYVVQTVAGREFAVCRLIESLVE----DDVLQECFVPRYEVQKQFRGQWRTCTATLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 ++V D +R VP ++ P+ EV I ++ Sbjct: 58 LIVVTDRVDELESQLRRVPAFA-WVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGV 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G+ + V GP G + +++ K + + +FGR ++ V K Sbjct: 117 IEGDRIIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXI2_MYCAP Length = 199 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 19/194 (9%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLF--------------GEVMVPTEEVV 50 + WY++ SG E +V SL+ I +E+ F V+ E Sbjct: 2 QRFMWYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEK 61 Query: 51 EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEV 108 + G + + GY+ + M M D +W +VR+ V G IG G +P P++ KE+ Sbjct: 62 KALGEPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEI 121 Query: 109 DAIMNRLQ---QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 D + + + + + F GE+V + DGPF G V E + ++ V V F Sbjct: 122 DLAFEKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHF 181 Query: 166 GRATPVELDFSQVE 179 G+ P + D+S VE Sbjct: 182 GKKVPTDFDYSVVE 195 >UniRef50_C2NS75 Transcription antitermination protein nusG n=2 Tax=Bacillus cereus group RepID=C2NS75_BACCE Length = 179 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 10/172 (5%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + SG+E V + + ++ + V+VP + V E R G + RK PGY Sbjct: 6 WYALCVRSGYEDLVESLILR-----DLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFI----GGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 +L+ M+ ++ ++ +P F+ I D+E+ I+ L G Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 + FE G V V GP G++ +D K R K+ ++ G +++ Sbjct: 121 EAYFE-GSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVE 171 >UniRef50_UPI0001692BF2 putative transcription antiterminator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BF2 Length = 176 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 75/177 (42%), Gaps = 13/177 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ +G E V + +++ +P + V E G RR R FPGY Sbjct: 3 WYVLFVTTGKEDVVGKYISNFCNHLSLQ-----CFIPKKVVPECHKGVRRDVIRVLFPGY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDR-------PAPISDKEVDAIMNRLQQVGDK 121 + ++ M+ ++L++ +P + + + + I ++E++ I + Sbjct: 58 IFIRTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTI 117 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + V+V GP ++++VD K R K+ V++ + V++ + + Sbjct: 118 EYSEVSI-INKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGINIL 173 >UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosococcus oceani ATCC 19707 RepID=Q3J8A9_NITOC Length = 174 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 11/179 (6%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S + KK WY++ E +L E +P + R +R + Sbjct: 4 SPSSKKFWYLIYCKPRQERLAQENLER---------QNFETYLPLVRQMRRRAYRRIATV 54 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP Y+ + + +W +RS V+ + +PA + D + + G + Sbjct: 55 EPLFPRYLFIHLDTEKDNWGSIRSTIGVISLVRF-GAQPAHVPDTLIRELQTHEGSDGIQ 113 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G+ V V +G A G+ + K R + + I G+ E++ + +++ Sbjct: 114 DLASPDFRKGQQVLVEEGLLAGHEGIWLTSN-GKKRAHILLEIMGKQIKTEVNENWLKR 171 >UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomonadaceae RepID=Q4K6G2_PSEF5 Length = 239 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 17/172 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+VQ + R +LR P + G+R+ FPGY Sbjct: 84 WYLVQCKPRQDLRAEENLRR---------QGFHCYRPQRGCERVVQGRRQSGTESLFPGY 134 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + + DASW +RS V + +P + ++++ R+ + K Sbjct: 135 LFIALEH-DASWAPLRSTRGVNRLVAFNG-QPLAVPVSLIESLRQRVTDMDTSLPYK--- 189 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G V + +G FAD + E + R+ + +++ + +EL S + K Sbjct: 190 --GTRVCITEGCFADLEAIFESSIGD-ERVVLLLTLLNQQRRIELPLSSIRK 238 >UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKF0_9FIRM Length = 186 Score = 123 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 6/173 (3%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY VQ +G E V ++ I ++ E +P E ++ G+ K + FPG Sbjct: 3 RWYAVQVRTGREEAVLQLSKKMIDGSVLK----ECFIPYYERMKRYQGEWHKEQYILFPG 58 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ + D + ++ VP + +G PI ++E I+ ++ Sbjct: 59 YIFLVTEQVDELFWELKKVPGLTKILG-DGMEFVPIKEEE-KVILQKMGGSDHIAEMSKG 116 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G++V V GP + G ++ +D K + + +FGR T V L V K Sbjct: 117 YVIGDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMK 169 >UniRef50_Q982S4 Transcription antitermination protein nusG n=1 Tax=Mesorhizobium loti RepID=Q982S4_RHILO Length = 182 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 7/179 (3%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + P+ RWYV++ E R ++ + + N+E + + + Sbjct: 8 DGPEARWYVLRV----EDRADIAVDKLLGEANVERVMLHTECEAKRRGRRKHQSLEPVRV 63 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGY+ V++V A+W +R+V V+G IGG P+P+S++E+ R++ + Sbjct: 64 PSFPGYIFVKVVSCAATWAGLRTVSGVLGPIGGCDG-PSPVSEQEILKFQARIENDPEAI 122 Query: 123 RP-KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V ++ GPFA F VV + +K ++ V V IFGR TP+ ++V K Sbjct: 123 AVLTNALKAGDKVSIDSGPFAGFEAVVLML-GDKHKVHVEVDIFGRKTPIGFALAEVTK 180 >UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE68_9RHOB Length = 166 Score = 121 bits (305), Expect = 8e-27, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 12/173 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K W+++Q + +L E +P ++ + + + R FP Sbjct: 3 KEWFILQFKPNSHHQATKNLTR---------QGFETFLPLTDITSRKTSRFINTTRPLFP 53 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ + WH + + V + S+ I V+ +M R + K P Sbjct: 54 GYMFITFDRTKPEWHKINNTYGVSRLVTFNSN-LKSIPTTLVENLMVRCD-LSSKILPVE 111 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V++ GPFA+F VE + + R+ V + + R T ++ +E Sbjct: 112 NLKKGDQVKILHGPFANFIATVETYETD-QRIWVLMDLMSRKTKIQTPLDALE 163 >UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB35_9ACTN Length = 170 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 5/162 (3%) Query: 19 EGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDA 78 E R A + + + + VP EV + GQ + K FPGYV V+ Sbjct: 13 EDRAAALIAKIA-----QGAVDDCFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQ 67 Query: 79 SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVND 138 + VP + D P++ EV I G+ V V Sbjct: 68 IREALGRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEMSEGVIEGDCVMVIR 127 Query: 139 GPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 GP + +D K V + +FGR + + V K Sbjct: 128 GPLKGHEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169 >UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F316_9PROT Length = 172 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 14/170 (8%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 K+W+ ++ E A +L EV +P G+ R F Sbjct: 2 SDKQWFAIRVKPRQESLAAANLER---------QGFEVYLPMINTRISHAGKVSWQPRPF 52 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP-- 122 F GY+ V + +++ W +RS V+ + + P P+SD+ + + R + G Sbjct: 53 FAGYLFVHLSIDEQRWTTIRSTVGVLAPVAFGTFYP-PLSDQVIALLQARHDENGLIAVS 111 Query: 123 -RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV 171 P++ F GE VR+ DG GV E+ + R + + ++ V Sbjct: 112 STPESPFRAGEKVRMLDGAMKGLEGVFIEM-RGQDRALILLDWMKKSMRV 160 >UniRef50_UPI00016C58F1 transcription antitermination protein NusG n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C58F1 Length = 223 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 25/203 (12%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRG--------- 54 KK+WY ++ SG E + ++ I + +ED+FG++MVP E+V+E + Sbjct: 21 ENKKKWYAIKVQSGREDTIKAAILRKIAIEGLEDVFGQIMVPVEKVIEKKAVKVKDKKTG 80 Query: 55 -----GQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG-----GTSDRPAPIS 104 ++ + + K F GY+ ++ ND +L+R V F+ + P P+S Sbjct: 81 EYNTVERKVERKVKKFQGYIFAELEFNDRLLYLIRETSGVGDFLKLRPRPNDTPVPEPMS 140 Query: 105 DKEVDAIM-NRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKS-----RL 158 D EV ++ ++ + K FE G+ VR+ +G F D G V++V K ++ Sbjct: 141 DAEVKQMLGEKVGPEKGPTKVKVDFEKGDRVRIKEGSFKDSEGDVKDVILPKDPTDPPKV 200 Query: 159 KVSVSIFGRATPVELDFSQVEKA 181 V+V+ +GR VEL++ QV KA Sbjct: 201 IVTVTFWGRPLDVELEYWQVTKA 223 >UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonadaceae RepID=A0KGQ9_AERHH Length = 183 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 66/174 (37%), Gaps = 11/174 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY+ E R L E P E+ ++R G+R FP Sbjct: 19 KKWYLAYCKPKEEARARAHLEA---------QGIESYYPMVEIEKLRRGKRVPVREPMFP 69 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Y+ + + + + + ++S + I + IS + V +M+R + + Sbjct: 70 NYLFIYVDLEEVTPVTLKSTRGISRIIHFGREW-TSISSQLVYQLMSRDDSDEARASYAS 128 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 L G+ V + GP A F + E D +K R + VS+ + T D + Sbjct: 129 LPTQGDKVLIESGPLAGFEAIYLEPDGDK-RAILLVSLLNQETSSSFDNQSFRR 181 >UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH43_DESAA Length = 178 Score = 120 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 13/175 (7%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 K+WY + S E V L E P ++ R +R+ + Sbjct: 8 NTKQWYALYTKSRHEACVNNYLAARS---------IESFYPQMRILSRRKDRRKMIDVPM 58 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGY+ V+ + + P + IG T I + + ++ Q+ + P Sbjct: 59 FPGYLFVRAALRSRQHLSILKAPGAVTLIGNTRGA-IAIPEDTISSLRIVSQKEALETGP 117 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G++V + GPFA GV + ++ V++ G++ VE+ + V+ Sbjct: 118 --CYHAGDLVLIVSGPFAGVTGVFMR-NKGGGKILVNIDALGQSVAVEMGGADVQ 169 >UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT Length = 186 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 11/179 (6%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +E P+ +WY ++A E A LR+ + +V P + Sbjct: 13 AEIPEAKWYCLRAQPKHEHIAAARLRQCEE--------IQVFCPRVRIQRSTRRGLVWFT 64 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP Y+ + S LVRS V G + P + +D + ++ K Sbjct: 65 EALFPNYLFARFEWV-QSHALVRSCQGVSGIVRFGDHVP-EVPAGTLDDLRAYMEDAELK 122 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V + +GPF NGVV+++ + R+KV + + G AT V+L + V K Sbjct: 123 -TVSFNIDEGDDVEIVEGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180 >UniRef50_C8PLY0 Transcription antitermination protein, NusG family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PLY0_9SPIO Length = 186 Score = 118 bits (296), Expect = 9e-26, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 6/173 (3%) Query: 10 YVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYV 69 Y VQ +G E L + I+ N E+ + P + + G R+K + FPGY+ Sbjct: 4 YAVQVKTGKEPE----LLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGYI 59 Query: 70 LVQMVMNDASWH-LVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 +++ +R P F+ + P P+ D ++ + + L K F Sbjct: 60 FLEIDDLSLPLCWQLRKTPNFYHFLPNNQN-PLPLVDNDLSLLHHFLSFGEVTAPSKVYF 118 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + + V DG G + +VD K R KV + ++ + P++L F +E A Sbjct: 119 DANSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIEPA 171 >UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCE7_9ACTN Length = 217 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 5/178 (2%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + + WYVV +G E + + E + E P RGG+ E+ Sbjct: 32 SQEVPWYVVNVPTGRESALCKVIERIAP----EGVVRECFSPLYSTQIKRGGEWLDVEKT 87 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 PGYV+V L+R VP + + P++D E I ++ Sbjct: 88 LLPGYVIVATEQIGRVKRLLREVPEYTR-VLNMGESFVPLADGERAWIDAFTRKGERCVP 146 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ V V GP ++ V+ +S V + I GR ++ V +A Sbjct: 147 MSMGVMEGDHVVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSRA 204 >UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteobacteria RepID=D2C1D2_DICD5 Length = 162 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 14/173 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ G R L + P + +I G+R + FP Y Sbjct: 4 WYLLYCKRGQLLRAKEHLER---------QDVVCLSPMIALEKIVRGKRTEVSEPLFPNY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V+ + S V F+ + PA + + ++ + + P Sbjct: 55 LFVEFDPEHIHTTTISSTRGVSHFVRF-GNLPALVPQQVIEDLQHHQCTTHVDPETP--- 110 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +PG+ V + +G F+ + E D E R + +++ + +D Q K Sbjct: 111 QPGDQVTITEGVFSGLEAIYTEPDGEA-RSMLLLNLLNKQVRQSIDNRQFRKV 162 >UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WBC3_MAGSA Length = 167 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 12/173 (6%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+VV + E A L+ +V +P + + FP Y Sbjct: 4 WFVVHTHANAEKIAAGHLQR---------QHFDVYLPQYSKRRSHARKVEWVKAPLFPRY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG-DKPRPKTL 127 + ++M + W +RS V + P P+ +D I R G Sbjct: 55 LFLRMDPDLTPWFSIRSTVGVHSLVCRGGM-PVPLGQVIIDEIRGREDDSGLVSLGEAMP 113 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F G+ + + +GP A+ G+ + +D + +R+ + + + GR V + V Sbjct: 114 FASGQRLEIVEGPLAEQLGLFQGLD-DMNRVVLLLDLLGRQVRVRVPLEAVRA 165 >UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter sp. MED105 RepID=A6GM36_9BURK Length = 179 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 13/177 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ-RRKSERKFF 65 +WYV+ E +L+ V P V + + GQ + F Sbjct: 14 AQWYVMYTKPRQETVALENLQR---------QNYNVFFPQARVQKRKTGQGTVQVVEPLF 64 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P Y+ +Q+ + + + +RS + + +P+ + + ++ I ++L K Sbjct: 65 PRYMFIQLEVGVSDFSKLRSTKGCVDLVKF-GGKPSVVPIELIELIQHQLDSDSVLDLLK 123 Query: 126 T-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 E G VRV +GPF G + + R+ V +++ G VEL SQ++KA Sbjct: 124 LNELEVGGEVRVAEGPFEGMMGKIAARKSD-QRVIVLLNVLGAERSVELAQSQLDKA 179 >UniRef50_A4EGG1 Transcriptional antitermination protein, putative n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGG1_9RHOB Length = 172 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 12/181 (6%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M++ +K W+V+Q T L ++P EV + R Sbjct: 1 MNDRNEKLGWFVLQLKPNGLSLARTHLAR---------QGFLTLMPLREVSQHARYGLRT 51 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 + FPGY+ + +W + V + GT +PA + ++ + G Sbjct: 52 VRQPLFPGYLFFSVTARQINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDG 111 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V V +GPFA + V D R+++ V + GR T V + +E Sbjct: 112 -MLGDVADLQTGDQVGVVNGPFAGWMAKVVSADTP-DRIQLLVDVMGRETAVNIAGRDLE 169 Query: 180 K 180 K Sbjct: 170 K 170 >UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T084_PSYIN Length = 169 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 12/175 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+VV S E R +L + P +I +++ E FP Sbjct: 4 QWFVVYCKSREELRAQRNLE---------NQGVYSFFPKICKEKILRSKKKVVEEPLFPS 54 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKPRPKT 126 Y+ V + ND + +RS + F+ A I D+++ I + Sbjct: 55 YLFVNISKNDEKFSAIRSTRGINNFVKF-GLSIATIPDQQIKKIEQLCHVNNKLAVNSED 113 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 +++ G+ + + GPF + ++ R + + I + + S ++K Sbjct: 114 VYQNGDKIEILSGPFKGLTAIFN-IEDGLERSMLLLKILNQDNNISFKNSALKKV 167 >UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV4_9GAMM Length = 169 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+++Q S EGR +L + P +V ++ G R E FPGY Sbjct: 4 WFLLQTKSKQEGRAVENLER---------QGVKSFCPMIKVEKLSRGSRVVKEEALFPGY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V + S VRS V F+ P + + ++ +M R D+ Sbjct: 55 LFVNFDQSSVSSTTVRSTRGVSHFVTSAG-LPVKVPESLINQLMLRTDAGNDETVSSLP- 112 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 GE +++ DGPF N V + D ++ R V +++ + L F+ + Sbjct: 113 SKGERLQIIDGPFRGLNAVFSQPDGDR-RAIVLINLLNQQVSASLPFASL 161 >UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionales RepID=Q7MMR1_VIBVY Length = 168 Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 13/175 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WY++ G + R L + E PT EV +I G+R+ FP Sbjct: 2 KKWYLLYCKRGEQIRAKQHLE---------NQGVECFYPTIEVEKILRGKRQIKSEPLFP 52 Query: 67 GYVLVQMVMN-DASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 Y+ V+ ++ VRS V+ F+ P + + + Q+ Sbjct: 53 SYIFVRFDFEIGPTFTTVRSTRGVVDFVKF-GAHPKELQGDLIYELKLLEQEGHQSALQG 111 Query: 126 TLF-EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + +PG+ ++V G FA + +E D E R + V + + PV ++ S +E Sbjct: 112 SNLPKPGDSIKVKSGQFAGIEAIFQEQDGET-RSIMLVKMISQTVPVSIENSDLE 165 >UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGR2_BREBN Length = 177 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 13/180 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E V LR + + +VP V E + G + FFPG Sbjct: 2 KWYAIFVESGKEEVVQKYLR-----LYFNEQSLKSIVPKRLVPEKKSGIVYNVLKNFFPG 56 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGG-------TSDRPAPISDKEVDAIMNRLQQVGD 120 YVL+Q M + +H ++ +PR + + + I +KE+ I+ + Sbjct: 57 YVLIQTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGEV 116 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 K E V V GP G++++VD K+R K+ ++ G +++ + K Sbjct: 117 VDYSKVYLE-NSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILSK 175 >UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idiomarina RepID=Q5QWY1_IDILO Length = 165 Score = 115 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 16/179 (8%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M+E WY+V+ E R + N+E+ V P V ++R G R Sbjct: 1 MNELESDVWYIVRTKPKQEERA---------ILNLENQGFGVFAPELTVKKVRRGVRTSV 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 + FPGYV V+ ++ +RS V G + + P + + +D + D Sbjct: 52 VERMFPGYVFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPK-VPQRWIDQMR-----GVD 105 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + + + G+ V + GPF F + ++D E SR V + + + +++ Sbjct: 106 QLTDEQAPQIGDTVEIQQGPFRGFLAKIVKLDGE-SRCFVMLEWMQKEVKANFSYKELQ 163 >UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Clostridiales RepID=C6LL07_9FIRM Length = 183 Score = 115 bits (287), Expect = 9e-25, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 6/172 (3%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q +G E R+ R I +E + +P EV + G+ + ++ FPGY Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLE----QCFIPRYEVKKHIQGEWKTQKQILFPGY 72 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V V ++ V + IG T PIS+ E + ++ + + Sbjct: 73 VFVVTSDIQNLHEELKKVIGLTKLIG-TGREIVPISENEKEFLLGFGGE-EQVVQMSEGI 130 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 G V ++ GP G + ++D K + + + + G V++ V K Sbjct: 131 ITGSQVVIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182 >UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGE4_KOSOT Length = 354 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 85/142 (59%), Gaps = 10/142 (7%) Query: 44 VPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPI 103 +P + ++I + + + +PGY+ ++M+M D +W+LV+S P V+ F+ +P + Sbjct: 216 LPGRKEIKI----FKITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSN-GGQPIEL 270 Query: 104 SDKEVDAIMNRL-----QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRL 158 KE+ A++ + ++ + + FE EMVR+N GPF DF G + E+D E+ + Sbjct: 271 KPKEIKALLRLVGLEEYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEV 330 Query: 159 KVSVSIFGRATPVELDFSQVEK 180 KV VSIFGR TPV L+ S++EK Sbjct: 331 KVVVSIFGRETPVMLNLSEIEK 352 Score = 46.1 bits (108), Expect = 6e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 29/47 (61%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI 52 +K+WY++Q +SG E + +L ++ + + LFG ++VP E ++ Sbjct: 2 RKKWYIIQTYSGLENSIKEALEAKVRSYGYDHLFGRILVPEEVKLDR 48 >UniRef50_P29397 Transcription antitermination protein nusG n=12 Tax=Bacteria RepID=NUSG_THEMA Length = 353 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 6/136 (4%) Query: 50 VEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVD 109 + RK FPGYV V+M+MND +++ VRSVP VMGF+ + +P P+ D+E+ Sbjct: 217 TRKEIRIYKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFV-SSGGQPVPVKDREMR 275 Query: 110 AIMNRL-----QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 I+ ++ + + F+ G+MV++ GPF DF GV++E+D E+ LKV+V+I Sbjct: 276 PILRLAGLEEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTI 335 Query: 165 FGRATPVELDFSQVEK 180 FGR TPV L S+VEK Sbjct: 336 FGRETPVVLHVSEVEK 351 Score = 46.5 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 KK+WY+V SG+E +V ++ + ++ +++L G +++P E V++ R Sbjct: 2 KKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIPEEVVLDATSPSERLILSP 59 >UniRef50_O67757 Transcription antitermination protein nusG n=7 Tax=Aquificales RepID=NUSG_AQUAE Length = 248 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 3/135 (2%) Query: 46 TEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISD 105 E + + + K FPGY+L++ MND + P V + +P P+ + Sbjct: 116 KITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVM-VGGKPVPLKE 174 Query: 106 KEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF 165 +EV I+N++++ K FE G+ VRV +GPF +F G VEEV EK +L V +SIF Sbjct: 175 EEVQNILNQIKRG--VKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIF 232 Query: 166 GRATPVELDFSQVEK 180 GR TPVELDF QVEK Sbjct: 233 GRMTPVELDFDQVEK 247 Score = 50.3 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 1 MSEAP----KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ 56 MSE +K+WY +Q G E +L + ++L ++DL EV+VP EE V IR Sbjct: 1 MSEQQVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPAEEKVVIRAQG 60 Query: 57 R 57 + Sbjct: 61 K 61 >UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRM3_9BACT Length = 169 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 11/176 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + WY + E + + D P EV ++R G+ F Sbjct: 3 EGDWYCLYTKPRQEN---------LTAQSALDAGFPTFNPKIEVRKVRRGKATYVHAALF 53 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P YV +Q N+ + R + V IG D + + ++ + Sbjct: 54 PSYVFIQA--NEGNLDKARYLRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDM 111 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ V+V DGP + ++ + R V +F +++ + K+ Sbjct: 112 HELKDGDKVQVLDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIEDLIKS 167 >UniRef50_B8KUX9 Transcription termination factor nusG domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX9_9GAMM Length = 214 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 14/163 (8%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A +RWYVV + EG + L P ++ + + G+ ++ Sbjct: 18 AAPRRWYVVASKPRSEGVAKSQLER---------QGFVTCAPRIKLRKRQRGKWQQVIEP 68 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGY+ V + + +RS +G + P+ + + +++ + Sbjct: 69 LFPGYLFVALRLGVDDPAPIRSTLGCIGLVR-MGREFVPVPEAVMQPLLSIGESPD---A 124 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 + +F+PG+ VR GPF +G+ ++ + R +V +++ G Sbjct: 125 SEAVFQPGQAVRFEAGPFEGLSGIF-KMPKGQDRAEVLITLLG 166 >UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z6E4_BACA2 Length = 176 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 13/180 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY + SG E V LR ++ ++P ++V E + G + ++ +K FPG Sbjct: 2 KWYALFVESGKEETVQKFLR-----LQFDEQALYSIIPKKKVTERKAGIKYEALKKMFPG 56 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTS-------DRPAPISDKEVDAIMNRLQQVGD 120 YVL + M + ++H ++ +P + + I D+E+ I+ + + Sbjct: 57 YVLFKTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGD- 115 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 ++ V V GP G+++++D K R K+ +S G V + + K Sbjct: 116 TVDYSKVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLSK 175 >UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IAM8_METNO Length = 255 Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 9/175 (5%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +RW+V+ A F R A L + + D + G+RR +R Sbjct: 90 RRWHVMVAKPRFARRAAKDLTKAGIPAVLTD--------ERVELVEESGRRRIVKRPLLR 141 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + V + A + R V + R + ++ + L + P Sbjct: 142 RVLFVGLPRCAAPEVVHRETYFVRDAVRDGCGRAIQVPADQLRRFVRALADTLTERDPNA 201 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 FEPG+ +R+ GPFA F+G++E+ DY RLKV+V IFGR +PV LDFS+VE+A Sbjct: 202 -FEPGDEIRIKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVERA 255 >UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiaceae RepID=B4S8Z4_PROA2 Length = 172 Score = 111 bits (279), Expect = 8e-24, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 12/178 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M E WY V S FE +V L+E +P + +++K Sbjct: 1 MDETGNLCWYAVYVRSRFEKKVHLLLQEK---------GIVSFLPLVDTWRQWSDRKKKV 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 F GYV V++ V V+ FIG + I D++++ I + Sbjct: 52 SMPLFRGYVFVRIHYRQD-HPFVLDTDGVVKFIG-IGRAASVIRDRDIEWIKILTGEPDV 109 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + L PG+ V+V GPF GVV + D +S+L V + V ++ + Sbjct: 110 RKEVLPLLPPGKQVKVIAGPFVGLEGVVRK-DGRESKLVVYFESIMQGIEVTINAEYL 166 >UniRef50_Q2CAE9 Transcriptional antitermination protein, putative n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CAE9_9RHOB Length = 162 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 2/153 (1%) Query: 29 HIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPR 88 + N+ V P ++ GQ R + FPGY+ V + Sbjct: 10 RLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMRAASYTRG 69 Query: 89 VMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL-FEPGEMVRVNDGPFADFNGV 147 V + P + D ++ + R G P+ + G+ V V DGP A Sbjct: 70 VARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGPLAGQVSR 129 Query: 148 VEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + + E R+ + + + GR T V + V + Sbjct: 130 IIALAPEA-RIWLLLDLMGRQTRVAVKREAVRR 161 >UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDM6_PARUW Length = 124 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 3/117 (2%) Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 +PGY+L++M ++D SW V++ V+ F+G D+P P++D EV I+ L+ K Sbjct: 1 MWPGYLLIKMNLSDESWQYVKNTNGVIDFLG--GDKPTPLTDFEVGEILKDLEDKKRKIT 58 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPV-ELDFSQVE 179 K FE G+ V++ DG F +F G V EV ++K RL V VSIFGR T V +L+F QVE Sbjct: 59 QKHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVE 115 >UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XAW5_9BACT Length = 205 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 11/173 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + WY V++ E A +L + E P+ + F Sbjct: 31 EPAWYCVRSKPKHEHIAAANLSKL--------QVVETFNPSLRSRKATRRGPVWMTESLF 82 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P Y+ + + + V+ V + + P + ++ + K + Sbjct: 83 PNYIFARFPF-EQMFDEVKYTRGVSSLVHFGTGYP-EVPADVIEELRRNFPANELKLSSE 140 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G+ V + GVV + R++V + + G+ + VEL+ + V Sbjct: 141 VP-TAGDQVTITSRALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192 >UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUS0_CHIPD Length = 174 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 +WYV + FE +VA + D E +P + ++ E F Sbjct: 12 DTKWYVAYTRANFERKVAKDIV---------DQQIEHYLPLRRETRKWSDRLKQIEVPLF 62 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 P Y+ V++ + + +P V+ + + +P +S++E+ I ++++ G + Sbjct: 63 PNYIFVKIKL--QHKVNILGIPGVLSLVSFSG-QPVSVSEREIQHIR-KIEERGQDIALE 118 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ VR+ G F G++ + R + + +A VE++ Q+E+ Sbjct: 119 YYYCVGDRVRITQGIFTGMEGILLR-KSGQMRFVLKLPAISQAVSVEIEGDQLER 172 >UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI35_DESAH Length = 174 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 12/177 (6%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + +K WY + S FE V +++ EV +P + R ++ + Sbjct: 2 SQEKSWYTLLTKSRFENVVFNDIQKKS---------IEVFLPKIKKRSQRKDRKLMIDVP 52 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGY+ V + ++ + V + +G +S P P+ ++++ D Sbjct: 53 LFPGYLFVNITLDPVTHLSVVKTTGAVRLLGYSSG-PVPVPSAHIESLKIVTGTGLDVVS 111 Query: 124 PKTL-FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + GE V V GPF+ G K R+ + + G+ VE+D +E Sbjct: 112 GTINTLQKGERVLVVRGPFSGVKGEFLR-HKGKDRVIIKIETLGQFAGVEIDREDLE 167 >UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0K9_PEDHD Length = 168 Score = 110 bits (276), Expect = 2e-23, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 72/178 (40%), Gaps = 15/178 (8%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 +K WYVV + E + +L ++ +P ++V +++ E Sbjct: 5 QQEKNWYVVVTYPNLERKALLNLLKNN---------FIAFLPLQKVQRKWSDRKKTIEIP 55 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FP Y+ + + D L + V ++ RPA IS+ ++ I ++ V Sbjct: 56 LFPNYLFININEKDRFEAL--DIYGVKRYVTF-GGRPAFISETDILNIKRIVESVDLY-- 110 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + G+ V++ GPF D G++ + ++R + V + +E+ + + K Sbjct: 111 IEHSLVKGDAVKIIGGPFKDMIGILFK-KSGQARFGIRVESMNQTLSIEICHTLIRKV 167 >UniRef50_B5YJ95 Transcription termination factor NusG domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ95_THEYD Length = 169 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 WY + S E +V L + E +P E + +++ + FP Sbjct: 6 FNWYCIYVKSRHEFKVFDRLTK---------AGIEAFLPAVERLRRWKDRKKLIKFPLFP 56 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GY+ V + + V P V+ FI S P PI ++E+ + ++ + P Sbjct: 57 GYLFVCIEKSYELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAIENGR-EIDPYP 115 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V++ GP A G++++ ++ +S+ I RA V++D S+VE Sbjct: 116 YLKEGQRVKIKSGPLAGATGILKK-KEKQHFFIISIHILQRAVSVKIDASEVE 167 >UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBP8_9FIRM Length = 171 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ G E ++ +P +VV + G E+ FPG Sbjct: 2 NWYVLFVRGGMEEKIRDFFLS---------QGLNAFIPKMKVVFRKQGISELVEKIMFPG 52 Query: 68 YVLVQMV-----MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 Y+ ++ M++ L ++ + P E + RL Sbjct: 53 YLFIESELEQAAMDEQIKELRMQKTGIVKLLKF-DKEGTPALRSEEKDYLERLLGKNKVL 111 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 T G V + +GP F + ++D K R + + + G+ V + V+K Sbjct: 112 EHSTGLIQGNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQK 169 >UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VS68_POLNA Length = 184 Score = 110 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 13/181 (7%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S + W++ E +L++ +V +P + ++ + Sbjct: 16 STDSESLWFLAHTRPRLETVALQNLQQ---------QGFDVYLPLYKRLKKIDAGMQAVF 66 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGD 120 F YV + S VRS V + A I +DAI Q + Sbjct: 67 EPMFSRYVFFRTTSLAQSIAPVRSTRGVAQIVSF-GSEFATIRPDMLDAIRQLEQLRNAA 125 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + PG +VR + + GVV+ V R+ V + I GR V +D Q+ Sbjct: 126 DVAELSTLRPGHLVRFCNSALSGLEGVVKSV--SSCRVAVLLEIMGRQQLVRVDHHQLVA 183 Query: 181 A 181 A Sbjct: 184 A 184 >UniRef50_B6GA74 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA74_9ACTN Length = 192 Score = 110 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 5/175 (2%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 + +WYV+Q G E +A+ + + ++ EV P E G+ ++ Sbjct: 2 RVQWYVIQVMKGREDSMASLIGRVVPKSLLQ----EVFSPKYETEIKVRGRWVPVQKTLL 57 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGY++ + ++R +P + + P++ EV+ I + Sbjct: 58 PGYLIAVTNDPEGLEAVLRDLPEFARLLA-QGNEFVPLAPAEVEVIGSFTSPGKRVVPMS 116 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + G+ V V GP +V+E+ KS + V++ GR + + K Sbjct: 117 IGVKDGDRVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171 >UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P702_9FIRM Length = 169 Score = 110 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 9/171 (5%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 +WYV+Q +G E V +L + VP EE + + G FP Sbjct: 2 AKWYVLQVLAGQETAVRDAL---------HIMGIRAAVPQEERLLRKNGGWTSRIYTLFP 52 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV + + + +++ V++VP V+ F+G + P+ ++ E + + + Sbjct: 53 GYVFLSLEYSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLRLLSNGGEPLKPSRV 112 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 P VR+ +G +F D R +V +++ G + L Sbjct: 113 EELPDGSVRIMEGVLQNFPVRSIHFDRRARRARVGITLCGEPKILTLSMGS 163 >UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V684_9RHOB Length = 171 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 13/176 (7%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 W++ Q +L H PTE E RG + + Sbjct: 6 DTAAWHIAQLRPNGLLMALRNLERQSVAH---------FAPTELRTERRGAKFVTRDVPA 56 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGYV VQ V S + + PA + + A+ R P P Sbjct: 57 FPGYVFVQPSAASGGVRAVNSTRGITKLVT-LGQGPAIVPAGLIAALRIRFAPPDITPAP 115 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + F+ G+ VR+ DGPFA+F V E R+ + + + GRAT V +D +++ Sbjct: 116 Q--FDQGDWVRILDGPFAEFVAQV-EATPAAERVYLLIDLMGRATRVAVDARSLKR 168 >UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01XJ6_SOLUE Length = 179 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 14/170 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+ V+ S FE + A LRE + P+ + + ++ FPGY Sbjct: 20 WFAVKVRSNFEKKSADILREK---------GYQEFAPSYPSRRYWSDRVKVIDQPLFPGY 70 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V + N + V V+ +G + AP+ + E+ ++ + + Sbjct: 71 VFCRFHPN--HFLPVLQTAGVVQIVGF-GGKLAPVDEVELASLRTLM-NSSLPISQREFL 126 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G V + GP A G++EE+ + R+ VS+S+ R+ E+D + V Sbjct: 127 HVGRKVLIRRGPLAGVEGILEEI-RKGYRIVVSISLLQRSVTAEIDANWV 175 >UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKC4_ALKMQ Length = 162 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 9/168 (5%) Query: 12 VQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLV 71 + S E + + + I+ +V+VP + E R G+ R ++ F GY+ + Sbjct: 1 MHVKSNEEMKAKKLVEKEIED-------IKVIVPQRIIPEKRQGETRHVKKILFTGYLFL 53 Query: 72 QMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPG 131 + ++ +++ ++ +P + F+G ++P I +E+ ++ Q K + + G Sbjct: 54 NVELDVDTYYKLKRIPSIHRFLG--LEKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEG 111 Query: 132 EMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 V+V GP G + +VD K R KV +S+ G A V+L ++ Sbjct: 112 NKVQVVSGPLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIK 159 >UniRef50_Q98R28 TRANSCRIPTION ANTITERMINATION PROTEIN n=1 Tax=Mycoplasma pulmonis RepID=Q98R28_MYCPU Length = 196 Score = 109 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 84/189 (44%), Gaps = 14/189 (7%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV-------PTEEVVEIRGGQR 57 K WY++ E V +++ + N+E F + + E + G Sbjct: 2 NKFNWYMISTIPNKEKEVIEAIKNKVVSENLEAYFSDFKIFWESRISAKELEKKQAGDSY 61 Query: 58 RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIG--GTSDRPAPISDKEVDAIMNRL 115 + +++ + GY+ ++MV+ + +W LVR+ V G +G G P PIS + ++ Sbjct: 62 KTTKKNMYNGYIFIEMVITNETWFLVRNTENVSGLVGSHGLGAWPTPISKLKFKKMIEEE 121 Query: 116 QQVGDKPRPKT---LFEPGEMVRVNDGPFADFNGV--VEEVDYEKSRLKVSVSIFGRATP 170 + ++ + F G V++ DGPF + V +++ ++EK + + G++ Sbjct: 122 TKKEEEFQLSLNLSKFREGLFVKIVDGPFKNDEIVYKIKKTNHEKKYSILEIESLGKSVD 181 Query: 171 VELDFSQVE 179 ++D ++ Sbjct: 182 TQIDHKHLK 190 >UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGB9_CHIPD Length = 185 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 14/176 (7%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 E WY V +E +VA +L E P V +++ E Sbjct: 2 EQKTHTWYAVYTKPRWEKKVADALVRK---------QIETYCPINRVTHQWSDRKKIVEE 52 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 F YV V+ + + LVR ++ F+ +PA I D EV+ I L++ D Sbjct: 53 PLFKSYVFVR--IPEDKKTLVRETSGIVNFV-YWLGKPASIPDHEVELIKRFLREYQDVQ 109 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + + +++R+ GP +G V E K+ +K + G + + S + Sbjct: 110 VERFPIQEDDLIRITAGPLMHQHGRVVE--AGKNTVKAVLYSMGFSLIATVKTSDL 163 >UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIP1_METNO Length = 230 Score = 108 bits (271), Expect = 7e-23, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 17/181 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RW++V +G + A +L + +EEVV +R G+ ++ F Sbjct: 58 RWHLVDCRAGKARQFADALAAGA---------IPALRLSEEVVRVRSGRPIRTRMPLFGR 108 Query: 68 YVLVQMVMNDASWHLVRS-VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR--- 123 + V + + H +R R + + ++ + +E+D L Sbjct: 109 LLFVGLDPHSEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLGGDVPPAERRT 168 Query: 124 ----PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 FE GE VRV DGPFA F+G+VEE+D E LKVSVSIFGR+TPV L+ +QVE Sbjct: 169 GAALTVEDFEIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLEPTQVE 228 Query: 180 K 180 K Sbjct: 229 K 229 >UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PT75_CHIPD Length = 174 Score = 108 bits (271), Expect = 8e-23, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ E RVA M D ++ +P V + + E FP Y Sbjct: 8 WYLLYTRPRQEARVAK---------EMADKNIQIYLPYTTVTRRWTDRIKVLEVPLFPSY 58 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V V + ++ ++ ++ + A +SD VDA+ + + F Sbjct: 59 VFVHLTNMHEFYY-GSNLESACSYVRF-GNEVARVSDAAVDAVRTIAKAGNNLEVSSERF 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 PG+ + + +GP N V + K ++ V V + R+ ++ S + Sbjct: 117 TPGQQMMIKEGPLCGLNCEVIQY-KGKDKILVRVHMLQRSIMADMPASVL 165 >UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanella RepID=B1KMD8_SHEWM Length = 179 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 23/187 (12%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K WY++ E R +L + +PT + G+ FP Sbjct: 4 KAWYLLYCKPRGEARAVHNL---------TLQNIDTYLPTIGEEKRVKGEVSIKRIPLFP 54 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP-- 124 GY+ + + S + S V +G ++ I D + +I R ++ + P Sbjct: 55 GYLFINIDPQVTSVARIHSTRGVGRIVG-CNELMTSIDDSIIHSIRLREHKLLSELLPAS 113 Query: 125 ----------KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 PG+ V+ +GPFAD G+ E +K R V I G+ V + Sbjct: 114 ELSQKCDGSSTVEINPGDQVKFTEGPFADLEGIFAEKSGDK-RCHVLFEIMGQKKRVSVP 172 Query: 175 FSQVEKA 181 ++ Sbjct: 173 RDSIKPV 179 >UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVK8_PEDHD Length = 176 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 13/177 (7%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 + K+WY V S E + +L E +P + + +++ E Sbjct: 8 SDIKKWYPVYTQSRAEKKAYQALLSK---------GIEAYLPLQRQLRQWSDRKKWVEEP 58 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 Y+ V + + L+ + FI + + A + D++++ + L + Sbjct: 59 LIKSYLFVHIARQQQTEVLM--TTGISRFIYFSG-KIAAMPDRQIEELKLLLASPYELEI 115 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + PGE + + GP G + E + +L + + + V + S +E+ Sbjct: 116 TEERLLPGEKIEIKAGPLKGIRGEIIEY-RSQKQLLLRLGDISHSIVVNVSASLIER 171 >UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira RepID=Q04WD1_LEPBJ Length = 179 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 15/182 (8%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M E K WY + E ++ L+E E +P + + + Sbjct: 1 MIENSKVNEWYALYTNPRAEKKLKRLLQERK---------IECFLPLISKKKKWSDRWKV 51 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ--Q 117 E +P Y+ V++ + +P F+ S +P I D++++ I L+ Sbjct: 52 VEEPMYPSYIFVKISFFQDRV-KILQLPGAHHFV-FYSGKPYVIPDEDLNLIRIFLETYP 109 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + + PG+ + + +GPFA F + + EK + V T V LD Sbjct: 110 DRIQVEIQERLLPGKKILIQEGPFAGFKAEIIQRKNEKQ-IIVKFPGMNLMTSVTLDIKT 168 Query: 178 VE 179 ++ Sbjct: 169 LK 170 >UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 Tax=Nitrobacter winogradskyi Nb-255 RepID=Q3SSD1_NITWN Length = 234 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 26/190 (13%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ------RR 58 K W++++ G E +V + ++ + VV G +R Sbjct: 31 QPKYWFILRTHPGCERKVMREFERRNISA-----YCPLIAKQQRVVRRVHGSSWTYEIKR 85 Query: 59 KSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118 + FP V V + + V G++ R S++E + Sbjct: 86 LVQVPLFPQLVFV-----PDFERVPADIGGVSGWLRFGGWRARIPSEREATSDRVACMAD 140 Query: 119 ---------GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT 169 + + FE G +VR+ DGPF DF+G +E +D K RLKV++ IFGR + Sbjct: 141 IHALVAIANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLD-SKGRLKVAIEIFGRLS 199 Query: 170 PVELDFSQVE 179 P E+ +Q+E Sbjct: 200 PTEMSEAQIE 209 >UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 Tax=Chlorobiaceae RepID=Q3AU98_CHLCH Length = 197 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 13/174 (7%) Query: 1 MSEAPKKR-WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK 59 M+E + WY V S +E +V +L E +P E + +++K Sbjct: 1 MAEIITPQNWYAVYVRSRYEKKVYQALLEREVNS---------FLPLYETIRQWSDRKKK 51 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVG 119 F GYV V + M S V V+ FIG +P+ I+++E++ + +++ Sbjct: 52 VSEPLFRGYVFVNIAMQQESI-KVLDTEGVVKFIG-IGRKPSVIAEREIEWLKKLVREPE 109 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 R G+ VRV GPF D GVV + + +S++ + + V + Sbjct: 110 AISRTVASLPAGQKVRVIAGPFKDMEGVVVK-EGRESQIVIYFDSIMQGVEVSI 162 >UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromonadales RepID=A0XZ39_9GAMM Length = 161 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 68/172 (39%), Gaps = 17/172 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+V E R +L + E P ++ +R + FP Y Sbjct: 4 WYLVICKPRQEERAKANL---------NNQGIEAFYPILTTEKLVKSRRTVKQVALFPNY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSD-RPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 + V + + + V++ + GF+ ++ + P+ AI+ L L Sbjct: 55 LFVCLDSKNGPFAAVKNTRGIGGFVTYGANYQVVPL------AIIEHLNNHTSNTVESQL 108 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 + G+ V V++ F + + + +E D + R + +++ + + +D + +E Sbjct: 109 PKQGDAVSVSNHSFKNIDAIYKEPDGD-MRSILLINLLNKQVEMSVDNTDIE 159 >UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWJ1_METI4 Length = 185 Score = 106 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 12/170 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + E +L++ EV P + +IR + FPGY Sbjct: 11 WYCLSIQPKKEKLAVENLKKEN---------IEVFFPQFQYQKIRSRKTSLVLEPLFPGY 61 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + + + VRS V + S P I D ++ + + + G K + Sbjct: 62 LFAKFNLYSK-LTFVRSTKGVRKVVHFGSSYPV-IPDSFIEELRIQFGEEGIK-TIRERI 118 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G + + +GPF ++ +V K R++V + GRA +E++ ++ Sbjct: 119 DVGSTINIAEGPFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168 >UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=Moritella sp. PE36 RepID=A6FES1_9GAMM Length = 174 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 12/179 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M++ KK WY++ E R +L+ + E PT V + + Sbjct: 1 MAD-DKKDWYLLYCKGKEEPRALINLK---------NQGIESFYPTMTVEKKLRNKLICQ 50 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E FP Y+ V + N A+++ +RS V+ F+ + V + + Sbjct: 51 EIAIFPNYLFVAIDKNTANFNSIRSTRGVIDFVK-CGANYTKVPAALVTELRATQRCRDK 109 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 T+F GE V + DG F + + R + +++ +T + + +++ Sbjct: 110 SANEVTVFSEGETVIIQDGAFKGIEA-IYQCKDGLERSMLLINLINHSTTMSVANGEIK 167 >UniRef50_B6TZG2 Transcription termination factor nusG family protein n=2 Tax=Andropogoneae RepID=B6TZG2_MAIZE Length = 336 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 52/226 (23%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFF 65 +W++V+ S G L ++ ++ P+ +V + G + Sbjct: 103 PQWWLVRV-SMAPGTDYVDLLTKAISRRYSEVPFKIYNPSIQVKRRLKSGAISVKSKPLH 161 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-------RPAPISDKEVDAIMNRLQQV 118 G V + +N +R GFIG T +P PI EV++I+ ++ Sbjct: 162 AGLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDEVESIIREEKEE 221 Query: 119 GDKPRPKTL-------------------------------------------FEPGEMVR 135 ++ + F PG V Sbjct: 222 QERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTRHSAFSPGATVH 281 Query: 136 VNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 V GPFADF G + EV+ + + V +S+FG+ + V+LDF Q+E Sbjct: 282 VLSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIEVV 327 >UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AEF0 Length = 175 Score = 106 bits (265), Expect = 4e-22, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K+ WY + E +VA L + E +P +EVV +R+K + Sbjct: 3 KENWYAMYVRMHHEKKVAEKL---------GQMGVEHYLPVQEVVRQWSDRRKKLQVVVI 53 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMG-FIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR- 123 P + ++ ++R++P V G I + RPA I D+E+ L + Sbjct: 54 PMMIFIRAS-EQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAVHF 112 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 T PG+ +RV GP A +G + E+D KS++ V + G A VE+ VE Sbjct: 113 INTPLAPGQKIRVIKGPLAGLDGELTEID-GKSQVMVRIEQLGYA-SVEMPVGYVEAT 168 >UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterobacteriaceae RepID=RFAH_ECO57 Length = 162 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 14/172 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY++ G R L + P + +I G+R FP Y Sbjct: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V+ + + V F+ PA + + + + P Sbjct: 55 LFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKDIVDPATPY-- 111 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 PG+ V + +G F F + E D E R + +++ + + ++ K Sbjct: 112 -PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 >UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QI43_9RHIZ Length = 175 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 12/173 (6%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K W VV A + E A++L++ E+ P R+S F Sbjct: 12 KPCWVVVNAQAHREFVAASNLKK---------QGYEIYAPVIRKTTRHARISRESLTPLF 62 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 PGY+ + D W + S + + + P+ + VDA+ R + Sbjct: 63 PGYLFARWTAPDMRWRPILSTVGIRSIVRN-GNEPSRLDGAIVDALKAREKDGVIVRAES 121 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 E G++VR GPF + E+ +K RL V +++ R T V + Q+ Sbjct: 122 QR-EIGQIVRFARGPFDGIAAEIVELC-DKDRLVVLMTLLNRPTKVTVLEDQL 172 >UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QKQ8_NITHX Length = 196 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 21/191 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q E + A L ++ V PT + R+ R FPGY Sbjct: 7 WYVLQTRPAHEDKAARGLVARGFDPYAPVVYRRV--PTGRRDDKGRKLTREIARPMFPGY 64 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV---------- 118 + VQ D + VR VP + G++ + P + D +D I + Sbjct: 65 IFVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFGRYLDEEER 124 Query: 119 --------GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATP 170 + R F+ G+ VRV G + D+ V + D + R+ + IFGR T Sbjct: 125 ARRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKAD-DLGRVVLLFHIFGRETK 183 Query: 171 VELDFSQVEKA 181 + D + +E A Sbjct: 184 IHADQADLEVA 194 >UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC5_SOLUE Length = 193 Score = 105 bits (261), Expect = 9e-22, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 14/172 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +W+ + + L +E E P + R Q + FPG Sbjct: 18 QWFALSVTPK---------LTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPG 68 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV ++ + V P V G +G +PAP+ D E+ A+ +Q + Sbjct: 69 YVFARIDVRFRL--PVLVTPGVRGIVGY-GRQPAPVDDGEIFALRRVMQS-QLPAKSAPY 124 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ V++ +GP + G++ + +R+ V V++ +A V+++ + V Sbjct: 125 LRTGDRVQLVEGPLSGLTGLLIQ-QKGANRVLVQVTLINQALAVDVESAWVR 175 >UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus RepID=Q1D5E3_MYXXD Length = 168 Score = 105 bits (261), Expect = 9e-22, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 17/175 (9%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + W + E A L +H E +PT + G + + Sbjct: 7 AENDWVALLVRVNHEKVAAAQLGKH---------GYEFFLPTYTPPKSSGVKAKL---PL 54 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 FPGY+ + + + +VR+ P V+ +GG + P + +E++AI R+ G P Sbjct: 55 FPGYLFCRYQPLNP-YRIVRA-PGVIRLLGGDAG-PEAVPAQELEAIR-RVADSGVSSNP 110 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 G+ VR+ +GP G + + R VSV + R+ VE+ Q+E Sbjct: 111 CDYLRVGQRVRIIEGPLTGLEGSLV-TSKSQLRFIVSVGLLQRSVSVEVSAEQLE 164 >UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium RepID=B8I511_CLOCE Length = 188 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 12/179 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ SG E RV L++ + + +P E + G ++ + FPG Sbjct: 16 HWYVLFVKSGREHRVEQYLKKIVGID-----MINPFIPLHEFLFKISGTVKRELKPLFPG 70 Query: 68 YVLVQMVMN-----DASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 YV ++ M ++ + + ++ + + + D E ++ L Sbjct: 71 YVFIESDMAGQEFIRKLYNKIYLLSDIVRILKYSDTE-IAVRDSE-KQMLLDLCNNEHCI 128 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ + + +GP ++++V+ K + V + G V + VEK Sbjct: 129 ESSRGVIKGDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVEKV 187 >UniRef50_A4YU22 Transcription antitermination protein nusG n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YU22_BRASO Length = 201 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 10/176 (5%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY+++ E +V + R + VM ++E +R G R Sbjct: 31 WYILRTHPHCEAKVMKAFRLRNISAYL-----PVMTVSKEFRRMRRGFEWIERRDVVSPL 85 Query: 69 VL--VQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ-QVGDKPRPK 125 +L V + + W R V +G + P ++ K I K + Sbjct: 86 ILGAVLIPDFEERWQCWRGVDGAVGLLRFGEWTP-RLTPKLFQDIRKIEDIANTPKSKRA 144 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 FE G++VRV GPF F+ VE +D + RL V IFGR TP+++D ++E Sbjct: 145 RAFEVGQLVRVLSGPFRYFSARVERID-SRGRLSVGAEIFGRITPIDIDEGEIEAV 199 >UniRef50_Q73PT3 Transcription antitermination protein, NusG family n=1 Tax=Treponema denticola RepID=Q73PT3_TREDE Length = 175 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 5/172 (2%) Query: 10 YVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYV 69 YVVQ +G E + + + ++L ++ P + + G+ + + F GY+ Sbjct: 4 YVVQVSTGKE---KNFIEDAEFKNKFDELSYSIVFPQRILKIRKAGKVTEKQLPVFAGYL 60 Query: 70 LVQMV-MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + ++ + +R F+ P + ++ + + + G + +F Sbjct: 61 FIGTDEISKDLYQHLRKCKGFYRFLPNN-QEPKFLEGRDFEILNQFISFGGLAKISQVVF 119 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + + ++V +GP + G + V+ K R V + + A ++L F + K Sbjct: 120 DENDRIKVIEGPLSGLEGYIVRVNKRKGRATVCLDMCQTAFSIDLGFEILNK 171 >UniRef50_Q10BA7 Os03g0825500 protein n=3 Tax=Oryza sativa RepID=Q10BA7_ORYSJ Length = 330 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 52/226 (23%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFF 65 +W++V+ S G L +L ++ P+ +V + + G + Sbjct: 104 PQWWLVRV-SMAPGTDYVDLLTKAISRRYPELSFKIYNPSIQVKKRLKNGSISTKSKPLH 162 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-------RPAPISDKEVDAIMNRLQQV 118 PG V + +N +R GFIG T +P PI +EV++I+ ++ Sbjct: 163 PGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEEVESIIREEKEE 222 Query: 119 GDKPRPKTL-------------------------------------------FEPGEMVR 135 ++ + F PG V Sbjct: 223 QERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSNHNAFTPGASVH 282 Query: 136 VNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 V GPF F G + EV+ + + + +++FG+ + V+LDF Q+E Sbjct: 283 VLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIEAV 328 >UniRef50_B1AJM2 Transcription termination/antitermination factor NusG n=15 Tax=Ureaplasma RepID=B1AJM2_UREP2 Length = 258 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 51/225 (22%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR------------ 53 + +WY+V SG E +V ++++ + + D ++ + E++ E++ Sbjct: 23 RHQWYIVTVVSGNEQKVIENIKDKLNGYGYGDKLSDLKIIKEKIKEVKIYEPSEAPRSMK 82 Query: 54 -----------------GGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGT 96 + E F GY+ ++ M D W L+R+ V G +G + Sbjct: 83 NRANTKWETIVVDGATKYRCTKIKEGNKFNGYIFLKAEMTDQIWFLIRNTQMVTGLVGSS 142 Query: 97 SD--RPAPISDKEVDAIMNRLQQVG--------------------DKPRPKTLFEPGEMV 134 +P P+ + ++ ++ + T FE + V Sbjct: 143 GKNVKPIPVPEDKILKLIADNDAKRALISLNEKVDHEENIEVIELHEDENFTNFEVDQEV 202 Query: 135 RVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 ++ F + ++D K V FGR ++L+F+ ++ Sbjct: 203 KIIADTFFGEIAKIAKIDQNKKIATVEFEFFGRINTLDLNFNDIQ 247 >UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTI0_CHIPD Length = 174 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 14/180 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +++ + +WYV+ + FE ++ L + D+ +P + V + ++ Sbjct: 7 ITQQRESKWYVLYTYPLFEKKIGRQL-------ALIDIIH--YLPVKTEVRKWSDRLKRM 57 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 E FP Y+ V+ + + + + +P V+ F+ R IS+ +++ I +++Q Sbjct: 58 EVPLFPNYIFVKTNLLNKT--PILGIPGVVRFVSVEG-RAIAISEDDINKIR-QIEQSRQ 113 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 ++++ G+ +R+ +G F+ G + + + R+ + + + +A VE+ +EK Sbjct: 114 DVEIESVYNTGDKIRILNGVFSGLEGELYK-RSNRLRVLIKLPVIAQAVSVEISNCDIEK 172 >UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PS65_CHIPD Length = 170 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 12/160 (7%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY + E ++ T L E +P ++ +++ E FP Y Sbjct: 8 WYALYTMPRHEKKLHTRLSELNVTS---------FLPMTRMLRTWHDRKKYVEMPLFPSY 58 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 + V + N ++ V + + ++ T + + IS++ + I +Q F Sbjct: 59 IFVYLN-NIEHYYNVLNTNGALYYVK-TGNELSRISEQIIHYIRIVSEQSTGIELSADYF 116 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 PG+ + ++ GP A F+ V ++ V VS+ R+ Sbjct: 117 PPGKELLISSGPLAGFSCEVVSY-KNSEKILVRVSLLQRS 155 >UniRef50_Q2GD85 Putative transcription termination/antitermination factor NusG n=2 Tax=Neorickettsia RepID=Q2GD85_NEOSM Length = 176 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 15/182 (8%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 MS + W V++ SG E +V ++ D ++ P + +R Sbjct: 4 MSSSSDHTWCVLRVRSGSESKVCDLIKSRCS-----DEVVDLFSPALVKFDASASKR--- 55 Query: 61 ERKFFPGYVLVQMVMNDA---SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117 F PGYV V++V A ++RS+ + + P +SDK++D + N + Sbjct: 56 ---FLPGYVFVKVVPGSAFLSEISVMRSLYGIPCRFLNQAGSPKFLSDKDIDEMRNFMLS 112 Query: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 P G V + F G V+E+D S+ KV + G+ V + Q Sbjct: 113 PEVTPE-SGKISVGSRVAILCEYFEACVGEVDEIDERTSKAKVKIVFCGQDVVVSFNLDQ 171 Query: 178 VE 179 ++ Sbjct: 172 LK 173 >UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XR75_9FLAO Length = 158 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 16/173 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV+ E +VA++L + L +V PT E V + +++K + F Sbjct: 2 NWYVLYVKPQSEKKVASALEK---------LGVKVFCPTLEEVRVWSDRKKKIQVPLFKS 52 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV V + + V +VP V+ ++ +PA + D+E+ AI + L Sbjct: 53 YVFVCLPNTER--QQVFAVPGVVRYL-FWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRT 109 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + PG V++ G F G+V+EV + RLK+ + G VE + K Sbjct: 110 YTPGTEVKIAAGHFKGQKGIVQEV--GRKRLKMVIKSLG--VIVEARLKDLVK 158 >UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAS1_RHISN Length = 169 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 64/178 (35%), Gaps = 16/178 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIR--GGQRRKSERKFF 65 WYVV+ +G + + ED V P + E F Sbjct: 3 HWYVVRTRAGQQQKA---------TREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLF 53 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP--R 123 GYV + ++D + +R + V+ + P P++ V+ I + ++ Sbjct: 54 TGYVFAYLRISD--FGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRP 111 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P + G+ V+V DGP V + + +K V IFG VE+ + + Sbjct: 112 PVRRLKAGDTVQVKDGPLTGHYAAVTNI-VGRRAIKAFVEIFGSLREVEIGLESIRRV 168 >UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp. At-9b RepID=C8QDS8_9ENTR Length = 170 Score = 101 bits (253), Expect = 8e-21, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 15/168 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYV Q E R L V EV GG RR +E+ FP Sbjct: 3 NWYVAQTKYAQEKRAQQQLLSQGVT-----CLFPVFS---EVRLQNGGIRRIAEQPLFPN 54 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 Y+ V+ +++ V I P+ + D + RL Q ++ T Sbjct: 55 YIFVRFDPEVVHTTAIKATRGVSSLISF-GGLPSVVPDSVI----IRLNQGWERAPLNTD 109 Query: 128 FEP-GEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 G+ V + DG F V E D K R + +++ R V ++ Sbjct: 110 APVHGDRVVIRDGAFEGLEAVWYEPDGLK-RAMLLLTLMNREVRVPVE 156 >UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBM5_9SPHI Length = 170 Score = 101 bits (253), Expect = 8e-21, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 62/177 (35%), Gaps = 13/177 (7%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 +E K+WY V S E + + L +P + ++ +++ E Sbjct: 4 TERDIKKWYPVCTQSRAEKKAYSELTRKNITS---------YLPLQRQMKQWSDRKKWVE 54 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 Y+ V + + L+ + FI + A + +++++ + + Sbjct: 55 EPLIRSYLFVHISRQQQAEVLM--TSGIARFIYFSGHI-ASMPEQQIEQLKLLTASPYEL 111 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + GE + + GP +G V + +L V ++ A V + S + Sbjct: 112 EITENNLLEGEKITIKAGPLQGMSGEVVAY-RSQKKLLVRMTELNHAILVHIPASLI 167 >UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9ECY4_9FLAO Length = 188 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 15/178 (8%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQ-RRKSER 62 + + W+V+ E + L EV +P + + I + ++ + Sbjct: 24 SKNRNWFVLYTAPRAEKKAKLELEYR---------GYEVFLPMTKSLRIWKNRQKKLIDS 74 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FP Y+ V+ + + + ++ +I +P +S + ++AI L + + Sbjct: 75 VLFPSYIFVKTD--ERYLAEICRINKIATYIH-CGGKPCKVSPECIEAIKCML-SMDQEI 130 Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 F GE VR+ +GP A +NGV+ + K++ + + + +E+ S +EK Sbjct: 131 SVGNDFIEGESVRIVEGPLAGYNGVLVQ-QKSKTKFGIHLKEINQVASIEICTSALEK 187 >UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 Tax=Thermoanaerobacter RepID=B0K4N5_THEPX Length = 179 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 8/173 (4%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+WYV+ SG+E +V + K ++++P +++E GQ + + FP Sbjct: 2 KKWYVIFTRSGYENKVRDIIENCFKEE------VKLLIPKRKIIERVKGQPVEKIKLLFP 55 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 GYV V M+D ++ + V + G RPA + ++E+ I++ + Sbjct: 56 GYVFVNAEMSDDLYYKISEVLK-RGIFLKEGKRPAFVKEEEMKIILSLTKNSD-LIDLSK 113 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVE 179 GE V++ +GP + G+++++D K R KV SI G V+L +E Sbjct: 114 GIMEGERVKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166 >UniRef50_Q4A648 Transcription antitermination protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A648_MYCS5 Length = 202 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 19/197 (9%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLF---------GEVM-VPTEEVVEI 52 + K RWY++ +G E + +L+ IK N+E F +V VP+ E+ Sbjct: 2 QNSKFRWYLISTITGKEAVIVEALKNRIKSENIEQFFDFSATEDGPFKVFKVPSITKTEL 61 Query: 53 RGGQR----RKSERKFFPGYVLVQMVMNDASWHLVRSVPRVM--GFIGGTSDRPAPISDK 106 Q+ + + FPGY+ V+ M D W+++R+ +V GG ++P P+S Sbjct: 62 NKKQKGLAYKVKWKNMFPGYIFVKADMQDLVWYIIRNTLQVTGIIGSGGGGEKPTPVSQN 121 Query: 107 EVDAIMNRLQQVGDKPRPK---TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS 163 ++ + + ++ + G++V + DG + V+E++ E + ++S Sbjct: 122 QIRKSLEKEEEAKKLFEENKNLLNLKVGDLVLITDGNWVGNEAVIEKIIVEDNMAEISFE 181 Query: 164 IFGRATPVELDFSQVEK 180 F + +++ + + Sbjct: 182 DFNKKVEFKINLDWLTR 198 >UniRef50_B9HCH7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HCH7_POPTR Length = 342 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 59/230 (25%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSERKFF 65 +W++V+ S G + + + N + +V P+ + + G + F Sbjct: 109 PQWWIVRV-SRIRGDETSDVLARLLARNFPQMDFKVYAPSVKERRKLKNGTYSVKPKPIF 167 Query: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSD-------RPAPISDKEVDAIMNRLQQV 118 PG V + V+N VR V GF+G +P P+SD +++A+ + ++ Sbjct: 168 PGCVFLWCVLNKEIHDFVRECDGVGGFVGAKVGNTKRQINKPRPVSDDDMEAVFQQAKEE 227 Query: 119 GDKPRPKTL--------------------------------------------------F 128 +K Sbjct: 228 QEKADIGFEEEQQAQGALNSVKLGSNNITQSFIDSNSERGLRKISGPLVSSSSRKKGDLP 287 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + G VRV G FADF G +++++ + + V V++FG+ + VELD S++ Sbjct: 288 KTGSTVRVVSGTFADFVGSLKKLNRKTGKATVVVTLFGKESLVELDLSEI 337 >UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPM2_9BACT Length = 150 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 9/111 (8%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 +WY +QA SG E + L I+ +M+D EV++PTE+V +R G++ RKF+PG Sbjct: 6 QWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNRKFYPG 65 Query: 68 YVLVQMVMNDA-------SWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI 111 Y+ V + + D WH V++ ++ F+G D+P P+SD E+ + Sbjct: 66 YLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG--GDKPVPLSDDEIQIL 114 >UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITB0_ACIBL Length = 182 Score = 100 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 16/178 (8%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEE-VVEIRGGQRRKSERK 63 + W+ VQ E RVA LR+ E +P V + G + Sbjct: 10 DELHWFAVQTRHRHEKRVAERLRQ---------SEIETFLPIHRAVHRWKNGINAEVNLP 60 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 FPGY+ ++ + + P V+ I +S+ P PI D E+ + + V +P Sbjct: 61 LFPGYLFTRLRGSQRI--PLLREPGVIA-IAASSNSPTPIGDNEIAQLRLVAESVKAEPH 117 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 P G+ V+V GP G++ + R+ VSV I R+ V++ ++E Sbjct: 118 P--FLAIGQQVKVVAGPLFGMEGILIR-KKSEYRVVVSVKIIMRSVAVDVSELEIEPV 172 >UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S2H9_9CLOT Length = 160 Score = 99.3 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 15/167 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYVVQ +G E +A L D+ + + P E GG E FPGY Sbjct: 3 WYVVQVRTGEEKDIAAKL---------TDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V +QM N +++ +++VP ++ + GT ++ E + I Q G P + Sbjct: 54 VFLQMDYNAGNYYRLKAVPGIVKLLSGT------LTYLEAEWIRLLAGQGGRPLEPTLMR 107 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 E E + + G +F + +D R + +SI G V+L Sbjct: 108 ETEEGLEIETGILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLGI 154 >UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UA20_SINMW Length = 219 Score = 99.3 bits (246), Expect = 6e-20, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 15/180 (8%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRK--SERK 63 K W+ ++ ++G E V SL +VP + ++R R Sbjct: 49 KAPWFALRVWTGREKTVEKSLDIMAVRS---------LVPMRKGPDLRRRGRVIEGQMMP 99 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI--MNRLQQVGDK 121 GYVLVQM+ + V V+ +GG +RP +SDKEV+ + R + Sbjct: 100 VIHGYVLVQMMALSEYLAGLLGVEHVIDVLGGC-ERPMRLSDKEVNRFNGLARNGNFDWE 158 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEV-DYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + GE V + GPF D V + + VS+ G PV + + ++K Sbjct: 159 RPVDLVVRAGEPVLITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALLKK 218 >UniRef50_A5FN19 Transcription antitermination protein nusG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN19_FLAJ1 Length = 154 Score = 98.5 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 12/154 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WYVV +E +VA L + + E P V+ +++K E F Sbjct: 2 NWYVVYTKPKWEKKVAEKLTQ---------IGIECYCPLITQVKQWSDRKKKVEMPLFNS 52 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV +Q+ D + V V ++ ++ +PA + D+E++ I N L+ + Sbjct: 53 YVFIQIEDADR--NSVFEVAGIVRYL-FWLGKPAVVRDEEINVIKNSLKASNIADISVSQ 109 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 + G+ +++ G F++ N +V+EV L + Sbjct: 110 IQVGDKIKLETGAFSNQNAIVQEVSKTHYILVLE 143 >UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacterium RepID=B0UIZ3_METS4 Length = 225 Score = 98.5 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 72/179 (40%), Gaps = 14/179 (7%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-RGGQRRKSER 62 AP + W V + + RV L L EEV + G RR+ Sbjct: 47 APDRVWLVARTRPRWAPRVVRDLAA---------LGLCAFEAREEVERVGPDGARRRVAV 97 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR---PAPISDKEVDAIMNRLQQVG 119 V + + +DA + P V+ + PAPI DA+ R + Sbjct: 98 PLLHRLVFLGL-RDDADLARAEAHPGVLRVLFREGRAVTIPAPILQAFADALAGRAGEGE 156 Query: 120 DKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 D+ L G+ VRV GP A G +E VD + R +V++ +FGRAT V+L +V Sbjct: 157 DEAVEAVLLALGDAVRVTRGPLAALRGTIEAVDPARRRYRVALGLFGRATRVDLAAEEV 215 >UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5F6 Length = 176 Score = 98.1 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 14/179 (7%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S K WY++ + EGR L + + P + ++ G+R+ E Sbjct: 10 SGPQGKVWYLLYCKAKEEGRAVMHL---------ANQGIDAFYPKANITKVLRGKRQTVE 60 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 FP YV Q+ + ++ VRS V+GF+ +S +D +Q Sbjct: 61 EALFPNYVFAQLDHDVHNFTSVRSTRGVIGFVK-QGKDYQKVSQALIDVF---VQCDTVD 116 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 L G+ V + + + + +E E R + + + + + +D SQ K Sbjct: 117 KLDSALPTKGDNVMLQHPQYQNIPAIYQEPKGEN-RAILLIHLLNKPVELVVDNSQFTK 174 >UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7D1F8_AGRT5 Length = 188 Score = 98.1 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 21/189 (11%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVE--IRGGQRRK 59 ++ K W+VV+ E V +LR+ +V +P E + E +RG Sbjct: 8 NQPGKHEWFVVETKHKAEKAVEDALRK---------AGVKVFLPLETIGETVVRGRIIPA 58 Query: 60 SERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNR-LQQV 118 R PGYVLV +V + A+ + + V GF+GG P +SD+E++ + Sbjct: 59 VSRPLLPGYVLVNIVYSPAAVCGIARLEGVAGFVGGMV-HPHRVSDEEMNRFKAFGDDET 117 Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSR--------LKVSVSIFGRATP 170 + F+ G+ VR GPFA F G + ++ +++ V+V +FG+ + Sbjct: 118 APDVKHCEQFKRGDKVRFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVST 177 Query: 171 VELDFSQVE 179 +E + +E Sbjct: 178 IEAPLALLE 186 >UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKV1_ACIBL Length = 194 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 16/171 (9%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS-ERKFFPG 67 W + + E +VA L E +P ++ + FPG Sbjct: 27 WSALFTYPRHEKKVAEQLLCR---------GVESFLPLYAEKRTWKNRQTVTLTLPLFPG 77 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV + D V S+P V+ + + ISD ++ + ++ +P + + Sbjct: 78 YVFARFARRDRVR--VMSLPGVVSIVERAGAV-SSISDHYIEKLRAGIRLGRVRPFREAI 134 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G+ V++ GP + GV+ + R+ VS+ + G++ +E+ ++ Sbjct: 135 L--GDRVQITSGPLSGLEGVLMHF-RSEFRVVVSIGMIGQSVSIEVLRDEI 182 >UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJZ0_RHOVA Length = 169 Score = 97.0 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 12/176 (6%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M +W V+ E +L P + + Sbjct: 1 MLLPVNSKWVVLTTHPHRENFAVENLAR---------QDFTAYCPMTVKHVRHARRAYDA 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 R FPGYV V+ + V + D PA + ++++ R Sbjct: 52 PRPLFPGYVFVEHQSAFQYLRPILGTYGVRSILR-IGDSPAVLPVGFIESLKAREMDG-V 109 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFS 176 +P+ + G+ V ++ GPF G + E E+ R+ + + + + T V+++ Sbjct: 110 ISKPEAPLKAGQTVTISGGPFDGLVGQILEF-RERDRVLLLLDLLNQQTRVQVEAK 164 >UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AFP3_9PORP Length = 180 Score = 96.6 bits (239), Expect = 4e-19, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 19/171 (11%) Query: 4 APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERK 63 A K WYV+ E +V + L E +P + + + E Sbjct: 20 ADKTSWYVLYTAPRAEKQVRDRINA---------LGVECWLPLHRAPRVWSDRVKIVELP 70 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR 123 F Y+ V+ D + V V + +PA + KE+DAI + L Q Sbjct: 71 LFNSYLFVRC--TDPELRNLTRVYGVARIVYYNG-KPAVVRQKEIDAIQDFLDQ-----A 122 Query: 124 PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 + PGE V + G +G V+++ K+ L + + G V+LD Sbjct: 123 SEHALCPGEEVEILCGAMKHVSGKVKKIK--KNHLVLYLEQLGATVCVKLD 171 >UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QI92_9SPHI Length = 161 Score = 96.2 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 16/156 (10%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+ E +A L E EV P + + E FP Y Sbjct: 3 WYVLCTKPRKEKFLAKLLAEK---------QIEVYCPLIRRKRRWSDRIKTVEEPLFPCY 53 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V + ++ + V P ++ ++ +PA + DKE+D I L Q F Sbjct: 54 CFVNVKESERADVFV--TPGIVRYL-YWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESF 110 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSI 164 P + V +N G F G V + +KV + + Sbjct: 111 NPKDKVVINSGSFMGQGGTVV----NQQGIKVLIHL 142 >UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ3_9BACE Length = 171 Score = 96.2 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 14/182 (7%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M + WY E + A L +H +P +EV+ +++K Sbjct: 1 MEAKKETHWYAFYVRMHHEKKTAEKLEMLKVVH---------FLPIQEVIRQWSDRKKKI 51 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMG-FIGGTSDRPAPISDKEVDAIMNRLQQVG 119 ++ P + + L++++P + G I + RPA I ++E++ L Sbjct: 52 KQVVIPMLIFICTD-EKGRIELLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSD 110 Query: 120 DKPRP-KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 + R PGE V V G G + E+ + S++ + + G AT VE+ V Sbjct: 111 ETIRFQSEPLAPGEKVEVIKGSLKGLQGELVEL-EDHSQVMIRIEHLGYAT-VEIPVGYV 168 Query: 179 EK 180 +K Sbjct: 169 KK 170 >UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algicida OT-1 RepID=A9DI26_9FLAO Length = 170 Score = 95.8 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 71/175 (40%), Gaps = 14/175 (8%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 W+V+ S +E +V SL ++ + +P + V+ +++ FP Y Sbjct: 7 WHVLYVKSRWEKKVHNSLE---------NISIKSFLPKTKTVQQWSDRKKTILTPLFPSY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP--KT 126 V V + + +H SV +I A +++KE++ I + + T Sbjct: 58 VFVYIE-SPLDFHKALSVDGACCYIRF-GKEYARVTEKEINQIKLLVDSKEIEEIELNPT 115 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 + GEM ++ GP + + + E + ++ V +S + + + +KA Sbjct: 116 FPKIGEMKKIEQGPLSGLDCEIIEAENYN-KIIVRISSLRQNILATIPLNSFKKA 169 >UniRef50_A9BF38 Transcription antitermination protein nusG n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF38_PETMO Length = 354 Score = 95.4 bits (236), Expect = 8e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 5/122 (4%) Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 FPGYV V+M+ + LV ++P V + +P ++ EV ++ + + + Sbjct: 231 NLFPGYVFVEMMYIKETEELVSNLPYVSTIL-NIGGKPVKLNKNEVRFVLRVMGEEAYQK 289 Query: 123 R----PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 R +T FE GE V++ +GPF F G +++ D EK ++V V++FGR T V L ++ Sbjct: 290 RQVKEVRTDFELGEHVKIINGPFEYFTGKIKDFDLEKQEVQVVVTMFGRETTVTLSLGEI 349 Query: 179 EK 180 EK Sbjct: 350 EK 351 Score = 49.6 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 +K WYV+Q +SG E +V +L E IK E FG++++P + + + +K Sbjct: 2 RKEWYVLQVYSGMENKVKETLEERIKNLGYEKYFGKIIIPEVDELNYSNKRVQKI 56 >UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3I2H8_9SPHI Length = 170 Score = 95.0 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 13/170 (7%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 + +W+V+ S E +VA LR + EV +P E + +++K E+ Sbjct: 2 NELKWFVMYTASRSEKKVAKRLR---------ENGKEVYLPIIEEIRQWSDRKKKVEKPL 52 Query: 65 FPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRP 124 F GYV V+ N W + VP + F+ + A + D+E++ I + Sbjct: 53 FNGYVFVKTTRN-QLWECL-QVPGAVKFVHFSGQH-ATVRDEELETIERIISTGVAVESD 109 Query: 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 ++ E GE V V G G V E K + + + V + Sbjct: 110 GSVIEAGEKVEVIGGALQHMTGEVIE-KGNKDYFLIRIPSIYQNMLVSIP 158 >UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IE36_METNO Length = 196 Score = 95.0 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 14/170 (8%) Query: 10 YVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVP-TEEVVEIRGGQRRKSERKFFPGY 68 Y E R L++ + P VV +R R FPGY Sbjct: 37 YAASVAGHGEYRACEWLQQ---------AGFATLAPGRTAVVRQASSGKRLVRRPVFPGY 87 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLF 128 V + SW + VP V + T + P + + ++ ++G RP+ Sbjct: 88 AFVG-KRPEQSWRDILRVPGVRALVT-TGEAPTELPPW-MMKMLIAADEMGAYDRPRPQL 144 Query: 129 EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G+ VR+ D + G V E R+ V + FG+ + +D ++ Sbjct: 145 AVGDKVRIRDELWQGLIGEVMRA-PEGRRIAVLLKAFGKKHVLSVDVDRL 193 >UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174528A Length = 158 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 5/143 (3%) Query: 41 EVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP 100 E P + FP Y + V + + V+ V+ +G D P Sbjct: 8 ETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYS-EAHRAVKHTHNVIRIVGFGGD-P 65 Query: 101 APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV 160 API D ++ + +Q + K E G+ V V +GP GVVE + + R+K+ Sbjct: 66 APIPDLTIENLREEMQ-GAELREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVKL 124 Query: 161 SVSIFGRATPVELDFSQV--EKA 181 + GR + VE+ S++ EKA Sbjct: 125 LLEFLGRQSLVEVQASKLLSEKA 147 >UniRef50_D1PRH1 Putative transcription termination factor NusG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRH1_9FIRM Length = 185 Score = 94.3 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 14/171 (8%) Query: 10 YVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYV 69 YV+Q +G E + LR+ P RGG+ ++ +P Y+ Sbjct: 4 YVLQVITGREKDICGRLRK---------AGIPAYCPRAVRQIRRGGRWQEQTYTLYPAYI 54 Query: 70 LVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFE 129 VQ ++ VR V+ ++G T P P+S E I+ +P K + Sbjct: 55 FVQCERVVDVYYAVRREDGVLYWLGATRGTPEPLSADEEANILWLAGDG-PQPVSKAVCR 113 Query: 130 PGEMVRVNDGPFA---DFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 + GP + + V + R + + G+ + L F Sbjct: 114 ADGSLDFTSGPLKRLAELEA-LRSVFRRERRATAVLPLHGKEHKINLSFEI 163 >UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NMQ2_9DELT Length = 176 Score = 93.9 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 28/180 (15%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WY ++ E + V +P VV +R+ R FPGY Sbjct: 10 WYAIRTKPHKEEMARQH---------YLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGY 60 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPR---PK 125 + +++ W + + +G + + P+ D ++ + R + G K Sbjct: 61 LFLRLNPETCDWAAIHATRGSIGPLRF-GEHYVPVPDWVIEGLQAREDEEGVIAPGAFQK 119 Query: 126 TLFEPGEMVRVN-------DGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 PG V V G F F G K +++ + I R + +V Sbjct: 120 EKLVPGCEVEVTMADGSAGKGFFCSFRG--------KENVEILMDILKRQVRTTVPLDRV 171 >UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8INV2_METNO Length = 178 Score = 93.5 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 73/187 (39%), Gaps = 22/187 (11%) Query: 5 PKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKF 64 K W+VVQ E RV L + +P V +R G++ K Sbjct: 4 QAKTWFVVQTGPARERRVVELLAR---------EGADTWLPLFRVTTVRRGRKVDDFEKV 54 Query: 65 FPGYVLVQMV---MNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQ----- 116 F YV + M ++ V+ +G DRP P + + +RL Sbjct: 55 FASYVFAGLDEETMRRRGTSVLFDCDHVLDVLGV--DRPLPFPADALQVLADRLAGHNRD 112 Query: 117 --QVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELD 174 + G + + GEM R+ +GPF F VEEV +K V IFGR TPVE Sbjct: 113 ETEEGRRRTEAAKIQVGEMRRIINGPFMSFFAEVEEV-LSNGIIKAGVRIFGRITPVEFT 171 Query: 175 FSQVEKA 181 Q++ A Sbjct: 172 PDQLDAA 178 >UniRef50_UPI00016C34F5 transcription antitermination protein nusG n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C34F5 Length = 177 Score = 93.1 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 12/174 (6%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RW ++ + +E V L V +P V + + ++ FPG Sbjct: 12 RWAALRTAARWEKAVTEQLAA---------AGVPVFLPLLTRVSRTKSKTQTAQLPVFPG 62 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 YV R P I P P K+ + L + + Sbjct: 63 YVFCG---EREYRDSTRVPPSCRKLIAQLLRAPDPDQLKDELRSVADLLANRQLLQERVY 119 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G+ VR+ GP A G + + R+ + VS G ++ +EKA Sbjct: 120 GVIGDTVRIVGGPLAGSLGTILRLKPGTRRVLIEVSFLGARMEATVEERLLEKA 173 >UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=Desulfotalea psychrophila RepID=Q6AIA2_DESPS Length = 193 Score = 93.1 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 14/181 (7%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 + WY ++ + E N + V +P + Sbjct: 22 DNETEGHWYAIRTKNKKEEVAK---------FNYQRQGYTVYLPLLRKTVHHARSTTEKL 72 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD- 120 FFPGY+ + + + +W + S +G + D I + + R + Sbjct: 73 VAFFPGYLFLNLAPAEQNWTAIASTRGSLGALCF-GDSYIEIPGWVISDLKAREDKGLSI 131 Query: 121 --KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 K K PG +V VN VV + + V ++I R + ++ Sbjct: 132 LAKDLIKENLTPGSVVTVNIPGLESVEAVVYSI-RGSENVDVLLNILSRQVKTTVSLDRI 190 Query: 179 E 179 + Sbjct: 191 K 191 >UniRef50_UPI0001972DAA NusG antitermination factor n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972DAA Length = 176 Score = 93.1 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 7/163 (4%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGY 68 WYV+Q +G E +A +R ++ L+G E+++ GG+ FP Y Sbjct: 2 WYVIQTTTGKEEELAGIVRRNVSHA----LYGSCFSMKRELLKRLGGRWTAVTETMFPSY 57 Query: 69 VLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDA---IMNRLQQVGDKPRPK 125 V ++ + ++ ++ +P +G PI +E + + ++ Sbjct: 58 VFLETEQPERLFYELKRLPEYTRLLGDNEGCFIPIEKEEENFLNILRRNEKETCVAGLTT 117 Query: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRA 168 + +R DGP F + +++ K V + + G+ Sbjct: 118 LDLDEDGGIRKADGPLQFFLDKIVKLNLRKRFAVVELKVAGKE 160 >UniRef50_A4E6I1 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6I1_9ACTN Length = 167 Score = 92.3 bits (228), Expect = 7e-18, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 1/153 (0%) Query: 26 LREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRS 85 +RE I+ E+ P + G+ + + FPGY++ + Sbjct: 1 MRERIERMVPASAMQELFYPQYQTEIKVHGEWVSTTKPLFPGYLICDTADPRTVQQYLLR 60 Query: 86 VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFN 145 + + + P++ +E I + + + G+ V V GP Sbjct: 61 MDDFAR-VLSQDGQFVPLAKEETQLIGSFTNRGDRVVPMSEALKDGDQVVVTAGPLLGHE 119 Query: 146 GVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178 G+++ ++ KS + + + GR + + + Sbjct: 120 GLIKTINRRKSTAYLELDLCGRRVTTRVGLAVL 152 >UniRef50_Q5LEP1 Putative LPS-related regulatory protein n=4 Tax=Bacteroides RepID=Q5LEP1_BACFN Length = 176 Score = 90.8 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 14/165 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + WY V E +V L + + E +P + VV + +++K Sbjct: 9 KENTSCWYAVYTAPRAEKKVKEQLDK---------IGVENYLPLQPVVRLWNNRKKKIFI 59 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 PG + V + + + + V F+ + I + +++ ++ + Sbjct: 60 PVVPGCLFVHISSEEIAHVA--GIHGVA-FLLKEKGQYVSIPEVQMETFKTMIEHSCELV 116 Query: 123 RPKT-LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 F PG +VRV G + E ++L + V G Sbjct: 117 EFAPNEFVPGTVVRVISGQLQGLEAELVEC-QGNNKLLLRVEGLG 160 >UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like protein n=57 Tax=Bacteroides RepID=A6L3Q7_BACV8 Length = 166 Score = 90.8 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 13/175 (7%) Query: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 K+W V E + A L E +P +E + +++K +R P Sbjct: 2 KKWLVAYVRLHHEKKTAERLTAMN---------IENFLPVQEEIRQWTYRKKKIKRVVIP 52 Query: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 + V + + S L S + PA I D++++ L + T Sbjct: 53 MMIFVHVDAAERSQVLTLSAIS-RYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCT 111 Query: 127 -LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 PGE++RV GP G + EVD K+++ V + + G V++ VEK Sbjct: 112 APLAPGELIRVVKGPLKGLEGELVEVD-GKAKVVVRLDLLG-CAGVDMPVGFVEK 164 >UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J1W0_9FLAO Length = 154 Score = 90.8 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 15/166 (9%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 WY + E +VA L+ L P + +++K P Sbjct: 2 NWYALYTKPRNEQKVAQKLQA---------LGIIAYCPLVLSSKQWSDRKKKVLVPLLPS 52 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT- 126 YV VQ+ + + V V V+ ++ +PA I E++A+ +L + Sbjct: 53 YVFVQIE--EQNRKDVFQVGGVVQYV-FWLGKPAIIKPNEIEALKQQLDSSIPVVHFEMT 109 Query: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVE 172 + E +++ +G F + +V+++ +++++ + +E Sbjct: 110 TWRSNETIQITEGVFKGQDAIVDKI--STNKVRLLLKSLNMYITIE 153 >UniRef50_C8WIA4 NusG antitermination factor n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIA4_EGGLE Length = 173 Score = 90.0 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 63/181 (34%), Gaps = 8/181 (4%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKS 60 M + R YV+Q G E VA +K +L + + +++ G R Sbjct: 1 MPSRGRAR-YVLQVVPGRERAVAE----RVKALAGPELVRDCFALSYCILKKNQGVWRLL 55 Query: 61 ERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 FPGY+ V +A ++ +G R + +E + + Sbjct: 56 TETMFPGYLFVASDDIEAFEKTIKRSTAFARLLG-AERRAFALRPEEASFVHDFGGPSHV 114 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 + + G + +++GP ++++D K + + + + V + V K Sbjct: 115 VGFSRGTIDNGRTI-IDEGPLRGHVDRIKKIDRHKRIAYLDIGLLDQKQ-VRVGLEIVRK 172 Query: 181 A 181 Sbjct: 173 T 173 >UniRef50_UPI0001B49F58 putative LPS-related regulatory protein n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B49F58 Length = 177 Score = 90.0 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 14/165 (8%) Query: 3 EAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSER 62 + WY V E +V L + + + +P + V+ + +++K Sbjct: 9 KENASCWYAVYTAPRAEKKVKEQLDK---------IGIDNYLPLQPVIRMWNNRKKKIFI 59 Query: 63 KFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKP 122 PG + V ++ + S+ V F+ + I + +++ +++ + Sbjct: 60 PVVPGCLFVY--ISSEEIAQITSIHGVA-FLLKEKGQYVSIPEVQMETFRTMIERSHELV 116 Query: 123 RP-KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 T F PG V+V G + E ++L + + G Sbjct: 117 EFAPTDFVPGSTVQVIRGQLQGLVAELVEC-QGNNKLLLRIEGLG 160 >UniRef50_A4E6Y7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Y7_9ACTN Length = 196 Score = 89.6 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 5/161 (3%) Query: 2 SEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSE 61 S+ + RWY+V +G E +R I + M+D V +E R G Sbjct: 22 SQHGRVRWYLVHTPNGKERETCEKVRCIIPHNLMQD----AFVMQKEFWFKRDGAWSLQT 77 Query: 62 RKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDK 121 + + Y V A + + G P+ D D + L + G Sbjct: 78 KPMYKEYFFVATHDAAALDRALAQLSFGCRIAGSRERAYMPMPDDAQDWYRSVLDEDGVV 137 Query: 122 PRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSV 162 E G ++ + GP V ++D K V V Sbjct: 138 RNSVARIEDG-VLHIEQGPLVGQEARVHKIDRRKRWCLVDV 177 >UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 Tax=Agrobacterium vitis S4 RepID=B9JXL7_AGRVS Length = 220 Score = 89.2 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 23/183 (12%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR--KSERK 63 + RW V + SG E + +L + + P E ++ ER Sbjct: 49 QARWVVARCKSGLEQVIRDAL---------AEQGIDCWCPCERRRLPPRRRKPALVVERP 99 Query: 64 FFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAI--------MNRL 115 F GY+ V+++ ++ ++ + R+ +G +P + + + + + Sbjct: 100 LFRGYLFVRVIPDNEAYAGLLLASRLQSLMGQDG-KPYLMPETLMRQLQLSAKAAERRHM 158 Query: 116 QQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDF 175 P P L G+ V + GPFADF V +V ++ ++ V V +FG + V + Sbjct: 159 DAGDVPPMPDML---GKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTVGV 215 Query: 176 SQV 178 + Sbjct: 216 EAI 218 >UniRef50_A9SPI1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPI1_PHYPA Length = 719 Score = 88.9 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 41/209 (19%) Query: 9 WYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEE-VVEIRGGQRRKSERKFFPG 67 WY+V E A L + EV+ P+ +++ G+ S + +PG Sbjct: 119 WYMVSTPKKAEHEAAEQLHIQFAQM-FPGMKYEVLTPSIPSFRKLKSGRYSDSRVRLYPG 177 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR--------PAPISDKEVDAIMNRLQQVG 119 +L++ VMN ++++RS R+ F G + P+ +S E++ + ++++ Sbjct: 178 CLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSIIEIEELFRKMEEAE 237 Query: 120 DK-------------------------------PRPKTLFEPGEMVRVNDGPFADFNGVV 148 + P P E G ++R+N GPF + G+V Sbjct: 238 AEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIRINVGPFINHTGIV 297 Query: 149 EEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 VD+E +++SV IFG++T EL + Sbjct: 298 NYVDHENETVQLSVVIFGQSTDAELRIDE 326 >UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9V3_VIBHO Length = 171 Score = 88.5 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 54/174 (31%), Gaps = 13/174 (7%) Query: 8 RWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFFPG 67 RWY V E + L EV +P ++ E G +RR + F Sbjct: 5 RWYAVYTHFNEEKVLRDELLAK---------GYEVYLPERKLWETLGNRRRVTYEPLFKC 55 Query: 68 YVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTL 127 ++ V+ V+ + A IS+ + I L D Sbjct: 56 HLFVRT--TPEGLKNVKQAQGFSHLVRY-GKYVATISESHIIKIKTILYYYEDATSVSNS 112 Query: 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 G V V +GP GV+ + E+ + G + V + + + Sbjct: 113 NVEGLAVAVVNGPLKGMIGVLPAGEGERPIAM-EIGQLGYSVNVTVPMDTIFRT 165 >UniRef50_Q7NAK3 NusG n=2 Tax=Mycoplasma gallisepticum RepID=Q7NAK3_MYCGA Length = 268 Score = 88.5 bits (218), Expect = 9e-17, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 87/265 (32%) Query: 1 MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEI-------- 52 MS+ +WY+ +G E V +L+ ++ + ED + V VE Sbjct: 2 MSKKSTAQWYIATTTNGNEDSVIKTLKAKVRALHFEDQILDCKVIKFRSVEETIFDSNNP 61 Query: 53 ----------------------RGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVM 90 + + ++ +PGY+ ++M MN+A+W VR+ + Sbjct: 62 THNIPATMRNSTYIKWVTVDNGVYKKYKITDTNKYPGYIYIKMEMNEAAWFAVRNTVNIT 121 Query: 91 GFIG--GTSDRPAPISDKEVDAIM------------------------------------ 112 G +G G +P PIS E ++ Sbjct: 122 GIVGSSGKGAKPIPISSSEELDLLNGESFDQNYRIVITPNAIIEMDRNLFNERGELILDE 181 Query: 113 NRLQQVGDKPRPKTLFEPGE------------------MVRVNDGPFADFNGVVEEVDYE 154 N + + K + + + G+ MV +N G ++ +G + + + Sbjct: 182 NAAKTIVHKKKSDSADKYGDMSTEKEQVDEAIELKVGHMVDINSGDYSGLSGQISRII-D 240 Query: 155 KSRLKVSVSIFGRATPVELDFSQVE 179 V V I G+ V+L+ Q++ Sbjct: 241 NDEYIVDVQILGKLVSVKLNKKQLK 265 >UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1 Tax=Sinorhizobium saheli RepID=D1CTG7_SINSA Length = 129 Score = 88.1 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 54 GGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMN 113 Q R +F Y+ V + + W + S V + P P+ V++++ Sbjct: 4 RAQHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSE-HAPLPVPHGVVESLLA 62 Query: 114 RLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVEL 173 G PK L EPG+ +RV +GPF D G ++ V +++ + I RA P+ + Sbjct: 63 ATDDEGF-LHPKELLEPGQKIRVTNGPFTDQLGTLDYV-GRSGAVRILIDIMNRAVPIYI 120 Query: 174 DFS 176 D Sbjct: 121 DRD 123 >UniRef50_C3RM78 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RM78_9MOLU Length = 166 Score = 87.7 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 19/177 (10%) Query: 6 KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65 K WYV+ A E ++ + LR + +P E R + + + F Sbjct: 2 KDNWYVLFALVAKENKLCSVLRRK---------GLDAFIPKIEYY--RRDIKGNTLKMLF 50 Query: 66 PGYVLVQMVM-----NDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGD 120 PGY+ V+ M ++ + L ++ + + D+E++ + N+L Sbjct: 51 PGYIFVRSEMKQSDFDNLLYELGEQRDGLIKQLKDDG--VTALRDEEIE-MFNKLLNSEG 107 Query: 121 KPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177 F +V GP + + ++D + + R L+ Sbjct: 108 ILEMSQAFIEDNKAKVIYGPLIHYQDHIVKIDKHNRIAILDIEFLNRHILAGLEIKS 164 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.144 0.397 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,136,436,884 Number of Sequences: 3077464 Number of extensions: 46473511 Number of successful extensions: 134255 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 751 Number of HSP's successfully gapped in prelim test: 337 Number of HSP's that attempted gapping in prelim test: 131692 Number of HSP's gapped (non-prelim): 1285 length of query: 181 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 60 effective length of database: 668,023,212 effective search space: 40081392720 effective search space used: 40081392720 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 89 (38.8 bits)