BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (227 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 270 4e-71 UniRef50_Q1R1E2 Two component heavy metal response transcription... 266 4e-70 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 263 3e-69 UniRef50_Q026B5 Two component heavy metal response transcription... 240 3e-62 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 239 4e-62 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 237 2e-61 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 229 4e-59 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 216 3e-55 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 216 3e-55 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 214 1e-54 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 213 3e-54 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 212 6e-54 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 212 8e-54 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 212 9e-54 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 212 9e-54 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 212 1e-53 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 209 4e-53 UniRef50_A9AKM2 Two component heavy metal response transcription... 208 1e-52 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 207 3e-52 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 204 2e-51 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 204 2e-51 UniRef50_A6SYV4 Heavy metal response regulator n=1 Tax=Janthinob... 202 1e-50 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 200 3e-50 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 199 5e-50 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 198 1e-49 UniRef50_Q6AQP4 Probable two-component system response regulator... 197 2e-49 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 197 3e-49 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 195 1e-48 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 194 1e-48 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 194 2e-48 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 194 2e-48 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 193 4e-48 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 192 5e-48 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 192 8e-48 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 192 8e-48 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 192 9e-48 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 191 1e-47 UniRef50_A9GMJ5 Two-component response regulator n=3 Tax=Bacteri... 190 3e-47 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 190 3e-47 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 190 4e-47 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 189 6e-47 UniRef50_C3QD36 Two-component system response regulator n=8 Tax=... 189 6e-47 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 189 7e-47 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 189 7e-47 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 188 1e-46 UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellov... 186 3e-46 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 186 6e-46 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 185 9e-46 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 185 1e-45 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_B8G869 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 184 3e-45 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 183 4e-45 UniRef50_D1B4N2 Response regulator receiver n=1 Tax=Sulfurospiri... 182 6e-45 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 182 6e-45 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 182 8e-45 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 182 1e-44 UniRef50_A5FCZ9 Two component transcriptional regulator, winged ... 182 1e-44 UniRef50_Q2NSR4 Putative two-component regulator protein n=1 Tax... 181 2e-44 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 181 2e-44 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 180 3e-44 UniRef50_Q1NA75 DNA-binding response regulator n=3 Tax=Alphaprot... 179 4e-44 UniRef50_A1SID6 Two component transcriptional regulator, winged ... 179 4e-44 UniRef50_A0R7V0 Two component transcriptional regulator, winged ... 179 5e-44 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 179 5e-44 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 179 8e-44 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 178 1e-43 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 177 2e-43 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 177 2e-43 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 177 2e-43 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 177 3e-43 UniRef50_D2QPF4 Two component transcriptional regulator, winged ... 176 5e-43 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 176 5e-43 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 175 9e-43 UniRef50_Q1NHM9 DNA-binding response regulator n=1 Tax=Sphingomo... 175 1e-42 UniRef50_B1ZUL4 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 175 1e-42 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 175 1e-42 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 174 2e-42 UniRef50_C6W0A8 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_A5FFW8 Two component transcriptional regulator, winged ... 173 4e-42 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 173 5e-42 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 172 7e-42 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 172 8e-42 UniRef50_UPI00017468BB two component transcriptional regulator, ... 172 8e-42 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 172 9e-42 UniRef50_A9BRL1 Two component transcriptional regulator, winged ... 171 1e-41 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 171 2e-41 UniRef50_Q2IGB7 Two component transcriptional regulator, winged ... 170 3e-41 UniRef50_Q7M9V5 TRANSCRIPTIONAL ACTIVATOR PROTEIN COPR n=1 Tax=W... 170 3e-41 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 170 4e-41 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 169 6e-41 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 169 6e-41 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 169 7e-41 UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=S... 169 8e-41 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 169 8e-41 UniRef50_UPI0000164CF1 response regulator n=1 Tax=Deinococcus ra... 169 9e-41 UniRef50_C6JKI6 DNA-binding response regulator n=3 Tax=Bacteria ... 168 1e-40 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 166 5e-40 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 166 6e-40 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 166 6e-40 UniRef50_B2IER4 Two component transcriptional regulator, winged ... 166 7e-40 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 164 1e-39 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 164 1e-39 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 164 2e-39 UniRef50_B0TXI9 Response regulator receiver protein n=14 Tax=Fra... 164 2e-39 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 164 2e-39 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 164 3e-39 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_UPI0001B559F0 two-component system, response regulator ... 164 3e-39 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 163 3e-39 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 163 4e-39 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_D2QLY6 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_C4F9Y6 Putative uncharacterized protein n=2 Tax=Collins... 163 5e-39 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 162 6e-39 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 162 7e-39 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 162 7e-39 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 162 9e-39 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 162 1e-38 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 162 1e-38 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 161 2e-38 UniRef50_A4CE30 Probable two-component response regulator transc... 161 2e-38 UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaer... 160 3e-38 UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bact... 160 3e-38 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 160 3e-38 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_C8NR68 DNA-binding response regulator n=12 Tax=Bacteria... 160 3e-38 UniRef50_A9HHL1 Probable two-component response regulator transc... 159 5e-38 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 159 5e-38 UniRef50_Q1H1R2 Two component transcriptional regulator, winged ... 159 5e-38 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 159 5e-38 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 159 5e-38 UniRef50_B2V7S5 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_UPI00016C506D two component transcriptional regulator, ... 159 8e-38 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 159 8e-38 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 159 9e-38 UniRef50_B5ZHN8 Two component transcriptional regulator, winged ... 159 9e-38 UniRef50_A0AHH4 Complete genome n=7 Tax=Listeria RepID=A0AHH4_LISW6 158 1e-37 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_Q01RB2 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_C7Q501 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 158 2e-37 UniRef50_A4AL32 Putative two-component system response regulator... 158 2e-37 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 157 2e-37 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 157 2e-37 UniRef50_C9ZA01 Putative two-component system response regulator... 157 3e-37 UniRef50_B5WI25 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 157 3e-37 UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synecho... 157 3e-37 UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec... 157 3e-37 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_B0RUJ6 Two-component system regulatory protein n=85 Tax... 156 5e-37 UniRef50_B1C8W4 Putative uncharacterized protein n=1 Tax=Anaerof... 156 6e-37 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 156 6e-37 UniRef50_A6W2Y0 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 156 6e-37 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 156 7e-37 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 155 8e-37 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 155 8e-37 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 155 9e-37 UniRef50_B1X008 Two-component response regulator n=2 Tax=Cyanoth... 155 9e-37 UniRef50_C7RF78 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 155 1e-36 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 155 1e-36 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 154 2e-36 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 154 2e-36 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_D2PKG5 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 154 2e-36 UniRef50_P0A4H9 Transcriptional regulatory protein dltR n=9 Tax=... 154 2e-36 UniRef50_A5FGB3 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_C8WY20 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococ... 154 3e-36 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 153 3e-36 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 153 4e-36 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 153 4e-36 UniRef50_Q1J2V2 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 153 5e-36 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 153 5e-36 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 153 5e-36 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_D0MIF5 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_B1YFQ0 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 152 6e-36 UniRef50_B9CM45 DNA-binding response regulator n=1 Tax=Atopobium... 152 6e-36 UniRef50_A3Y7S2 DNA-binding response regulator ColR, putative n=... 152 6e-36 UniRef50_B0C620 Two component transcriptional regulator, winged ... 152 7e-36 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 152 8e-36 UniRef50_C6QB49 Two component transcriptional regulator, winged ... 152 8e-36 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 152 1e-35 UniRef50_Q2RZP1 PhoP3 response regulator n=2 Tax=Rhodothermaceae... 152 1e-35 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 151 1e-35 UniRef50_D0XW93 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 151 2e-35 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 151 2e-35 UniRef50_P0A5Z7 Transcriptional regulatory protein prrA n=41 Tax... 151 2e-35 UniRef50_C8W041 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 151 2e-35 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 151 2e-35 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 150 2e-35 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_P0A4I1 Transcriptional regulatory protein cutR n=91 Tax... 150 3e-35 UniRef50_C0Z6C7 Two-component response regulator n=3 Tax=Bacilla... 150 3e-35 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 150 3e-35 UniRef50_A5FVA6 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_B4WSE4 Response regulator receiver domain protein n=1 T... 150 4e-35 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 150 4e-35 UniRef50_Q2W278 Response regulator consisting of a CheY-like rec... 150 4e-35 UniRef50_C1XS75 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_UPI0001C318D2 two component transcriptional regulator, ... 150 5e-35 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 149 5e-35 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 149 5e-35 UniRef50_B2UQC6 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_B3EBC9 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_A5VCP5 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnos... 149 6e-35 UniRef50_Q1IW75 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 149 7e-35 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 149 8e-35 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 149 8e-35 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 149 8e-35 UniRef50_C3WHY2 Two-component response regulator n=8 Tax=Fusobac... 149 8e-35 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 149 1e-34 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 148 1e-34 UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrh... 148 1e-34 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 148 1e-34 UniRef50_C7MLF5 Response regulator with CheY-like receiver domai... 148 1e-34 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 148 1e-34 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 148 1e-34 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 148 1e-34 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 148 1e-34 UniRef50_B9L7R6 Response regulator receiver domain protein n=2 T... 147 2e-34 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 147 2e-34 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 147 2e-34 UniRef50_A5UQY1 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 147 2e-34 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 147 3e-34 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 136/225 (60%), Positives = 166/225 (73%), Gaps = 7/225 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE+KTG YL +GL E G+ DL +NG +G A G YDLIILD+MLP ++GW Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 I+ LR + P+L LTA + +VKGLELGADDYL+KPF F EL+ARVRTLLRR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 AA + +AD+ VD+V R V RSG +I LT KE+ LLE L+ GEVLPRSLI+S Sbjct: 123 QAATVC----TIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSL 178 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW+MNFDSDTN IDVAV+RLR KID+DFEPKLI TVRG GY+LE+ Sbjct: 179 VWNMNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEI 223 >UniRef50_Q1R1E2 Two component heavy metal response transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=Q1R1E2_CHRSD Length = 223 Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 131/222 (59%), Positives = 176/222 (79%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE KT +YL +GL EAG+ V++A +GL+G HL D++LIILD+MLP ++GW Sbjct: 1 MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R++R + +P+L LTA +E+RVKGLELGADDYLVKPF+F ELLARVRTLLRRG Sbjct: 61 ELLRLIRRHGQ-VPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGP 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E +FQVADL +D++ R+VTR TR+ LT+KEF LL+ L +GEVL R+LIAS+VW Sbjct: 120 LRERE-RFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 MNFDSDTN ++VAV+RLR K+D+ F +LI T RG+GY+LE Sbjct: 179 GMNFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 126/227 (55%), Positives = 177/227 (77%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE +T EYL KGL+E+GFVVD+A+NG +G H+A DYD+IILD+MLP ++GW Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +RS ++ P+L LTAL + RV+G ELGADDYLVKPFAFAELLAR+R LR+ Sbjct: 61 TVIKSIRSKSE-TPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E + ++ADL +D++ R+V R TRI LT++EF+LL +R +GEVL R+ IASQVW Sbjct: 120 SKESE-RLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +NFD+DTN +DVA++RLR K+D+ F+ KLI TVRG+GY+L+ G+ Sbjct: 179 GVNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPERGR 225 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/225 (52%), Positives = 157/225 (69%), Gaps = 2/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK+ ++L +GL AG+ VD A G L DYDL++LD MLPD++G Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +RS G P+L+L+A G ++ RVKGLE GADDYLVKPFAF ELLARVR LLRRG Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + QV+DL +D + RKVTR I L KEF +LE+ +R++G L R++I VW Sbjct: 121 PT--PERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 DM++D TN +DV ++ LR KID+ F+ KLIQTVRG+GYM+E PD Sbjct: 179 DMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPD 223 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 113/222 (50%), Positives = 160/222 (72%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+K YL+KGL E+G+VVD DNG G H+A T YDL+++D MLP+++G Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VRMLR+ P+L+L+ALG ++ RV+GL G DDYLVKPF+F+ELLAR+ LLRR Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 AVI-IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +VADL +DL++R V R+G I L +EF LLE+F+R+ G+VL R+++ +V Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 WD +FD TN IDV + RLR KID DFE L+ T+RG GY+L Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/219 (51%), Positives = 164/219 (74%), Gaps = 3/219 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED ++T E++T+GL+EAG+V+D +G +G +LA+ DY LIILDIMLP ++GW Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR+A K P++ LTA +++ RV+GL+ GA+DYLVKPF+F+ELLARVR LR+ Sbjct: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + S +++ L +D VS V+R ITLT KEF LL GE++PR++IAS++W Sbjct: 120 A--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +NFDSDTN +DVA++RLR K+D+ F KLI T+RG+GY Sbjct: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 229 bits (585), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 111/224 (49%), Positives = 158/224 (70%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE K YL KGL E+G+ + GL G + YDL+ILD+MLPD+ GW Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++LR +K +P++ LTA + RVKGLELGADDYL KPF++ ELLAR+++LLRR Sbjct: 61 SVLQVLRQFSK-IPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR-Q 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E++ ++DL +DLV KV R+G I L+ EF LL + L ++ +++ R I S+VW Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 ++NFD+DTN IDVAV+RLR KID +EPKLI T+RG+GY + V Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKISVS 222 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 102/222 (45%), Positives = 156/222 (70%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++K ++ GL ++GF VD A NG +G HLA T Y + I+D+MLP ++G Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR PI++L+A ++E RV+GLE G DDYL KPF+FAELLARV+ L+RR Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ V +L ++L++R+V+R T + L +EF LLE+F+R+ G+VL +++I VW Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D +FD TN +DV V RLR KID D++ K++ T+RGVGY+L+ Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLK 222 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 151/221 (68%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+++T ++L K L E G DLA +G G LA G YD++I+D MLP ++G Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ P+L+L+ALG ++ RVKGL G DDYL KP+A++ELLARV L RR A Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ V DL++D +S +VTRSG I L +E+ LLE+ ++H G+V+ R+++ VW Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD TN IDV V RLR KID +F+ L+ TVRG GY + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 156/223 (69%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE K + KGL E GF VD+A +G G LA + +YDL+ILD+ LP NG++ Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-GA 120 + ++R N +PI++LTALG ++ +++ ELGADDYLVKPF F EL+AR+R L+R G+ Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 121 AVIIESQFQ--VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 V +Q++ + DL +D ++VTR G +I LT+KE+ LLEF H+G+V+ + +IA + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VWD++FD+ TN I+V + LR KID DF+ KL+ T G+GY L Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 105/221 (47%), Positives = 153/221 (69%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDEKK +++ +GL E G+VV+LA++G +GY A + YD+I+LDIMLP +G Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + +P++L+TA G ++ R++GL LGADDYL KPF EL+AR++ L RR + Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S QV DL+V+L +R+V R G + LT++EF LLE+ +R G VL R+ I VW Sbjct: 137 GKSL-SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVW 195 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD TN +DV V+RLR K+D + LI+TVRG GY + Sbjct: 196 GYDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 212 bits (540), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 154/223 (69%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE K ++ KGL E VD+A +G G ++A+ YD+I+LDI LP +NG+ Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+V+ +R P+L+LTA+G+++ ++ G E GADDYLVKPF F EL+AR+R L +R + Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 AVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 +++ +VADL +DL + R RI LT+KEF LL++ +R++G V+ R IA +V Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 WD++FD+ TN IDV V LR KID DF KLI TV G+GYML+ Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLK 228 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 212 bits (539), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 111/223 (49%), Positives = 147/223 (65%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDE+ L K L + VD NG + YDLI+LDIM+P +NG Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ N P+LLLTA TI+ RVKGL+LGADDYLVKPFAF ELLAR+R L+RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + F++ADL+VD KVTR ITL+SKEF +LE+ +R++ VL R I VW Sbjct: 133 GN-TSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW 191 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +++ +N IDV V+ LR K+D+ FE KLI TVRG GY+L V Sbjct: 192 NYDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRV 234 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 106/225 (47%), Positives = 147/225 (65%), Gaps = 7/225 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEKKT ++ K L F VD++ +G LA +D I+LDIMLP +G Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 ++R LR P+LLL+A G + RV+GL GADDYL KPFA AEL+ARVR++ RR Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 120 --AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 +V++ QVADL +D ++R+ R GT LT++E+ LLEF +R G + R I Sbjct: 121 EPKSVLL----QVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILE 176 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +VWD +FD TN +DV +KRLR K+D FEPKL+ TVR VGY+++ Sbjct: 177 KVWDYDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMK 221 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 212 bits (539), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 148/221 (66%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++ED+ + +++ KGL EAG +V+ A +G G A +D+I+LD MLP V+G Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R+ P+L+L+ALG ++ R++GL G DDYL KPFA +EL+ARV L RRG Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A+ ++ + DL +DL+ R VTR+G RI LT +EF +LE+ +R G V+ RS++ VW Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D NFD TN ID V RLR K+D F+ LI+TVRG GY++ Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVV 221 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/223 (45%), Positives = 145/223 (65%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+++ YL K TEAG D+A +G GY LA G YD++++D MLP +G Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V LR+ P+L+L+ALG ++ RV GL G DDYL KP+AF+ELLARV L RR + Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ ++V DL +D ++ R ITL +EF LLE+ +RH G+V+ R+++ VW Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN IDV + RLR KI+ F+ L+ TVRG GYML+ Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKA 243 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 149/221 (67%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ G+ L +GL+EAG G +G A T +D ++LD+MLPD G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++VR +R G P+L+LTALG+++ RV GL GADDYLVKPFAF ELLAR+ + RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRR-T 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 SQ +V L++DL +RKVTR+ + ++LT EF+LLEF +R+ G+V+ R ++ +W Sbjct: 120 KDRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + +++ TN ++V + RLRGKID F LIQTVRG GY+L Sbjct: 180 ESDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_A9AKM2 Two component heavy metal response transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=A9AKM2_BURM1 Length = 232 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 157/226 (69%), Gaps = 4/226 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI+EDE K EYL GLTE G+VVD A +G +G A+ DYD+++LD+MLP ++G+ Sbjct: 1 MKVLIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR A K P+++LTA ++ RV+GL GADDYL KPF+F EL+ R+R L R Sbjct: 61 GVLRALR-AQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTR--R 117 Query: 121 AVIIESQF-QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 A + ES + DL VDL+ R+ TR GTR+ LT++EF LL R GEVL ++ IA V Sbjct: 118 ARVQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELV 177 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 WD+NFDS+ N ++ A+KRLR K+D F KL+ T+RG+GY+LE D Sbjct: 178 WDVNFDSNANVVETAIKRLRAKLDGPFPEKLLHTIRGMGYVLEARD 223 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 101/222 (45%), Positives = 145/222 (65%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ K ++ KGL + G+ VD A +G G LA + YD ++DIMLP+++G Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VR LR+ MP+L L+A ++E RVKGL+ G DDYL KPFAFAEL AR++ L+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ D+ +DLVSR VT G + L +EF+LLE+ LRH G + + +I VW Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D +FD TN +DV + RLR KID D I+T+RGVGY+ + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPD--KTRIETLRGVGYVFK 225 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/223 (45%), Positives = 151/223 (67%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VEDEKK +TK L + + VD +G +YD IILDIMLP ++G+ Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ +R+ +PILLLTA I+ +VKGL+ GADDYLVKPF F EL+AR+R LLRR + Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ VA+L VDL ++ V R G I L+ +E+++LE+ +R++G++LPR I +W Sbjct: 121 GN-ADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + ++ TN IDV ++ LR KID+ + PKLI T+RG+GY+L V Sbjct: 180 NYEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRV 222 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE +T L +GL E G+ VD+ +G + A YD I+LD+MLP ++G+ Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR A + P+L+LTA G ++ R++GL+ GADDYL KPF+F EL AR+R L+RRG Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRG- 148 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 AV + ++ DL +D +V R+G+ + L++KEF LL +RH EVL R+ I VW Sbjct: 149 AVERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D FD +N +D V+ +R KID P LI+TVRGVGY L P Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRTP 252 >UniRef50_A6SYV4 Heavy metal response regulator n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SYV4_JANMA Length = 232 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 111/234 (47%), Positives = 152/234 (64%), Gaps = 17/234 (7%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L VEDE K GE + GL +AGF+VD G NG A+ G YDLI+LD+ P +NGW Sbjct: 1 MKILFVEDEIKPGETMHHGLKDAGFIVDCVKAGSNGLTRALRGAYDLIVLDVKKPHLNGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR+A+ P+L LTA ++++V +LG DDY++K F+F EL+ RVR LLRR Sbjct: 61 KLLLELRAAHDA-PLLFLTAREAMDNQVSDAKLGVDDYMIKSFSFMELMERVRILLRREC 119 Query: 121 ---AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 IIE ++D+++D+ R V R+G I LT K+F+LL + GE L RSLIA+ Sbjct: 120 EQEPKIIE----ISDILIDVSKRCVLRNGRYIDLTRKQFSLLHLLAKRSGEALSRSLIAA 175 Query: 178 QVW------DMN---FDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 QVW D N FD DTN +DVAV RLR K+D+ + +LI+TVRG+GY+LE Sbjct: 176 QVWGADFDGDTNVVDFDGDTNVVDVAVCRLRAKLDDHYPQQLIRTVRGMGYVLE 229 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ +L G + G + A NG++G H A++ YD+I+LDIMLP +G+ Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+L+L+A +++ RVKGL+ GADDYLVKPFAF ELLAR ++L RRG Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 AVIIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 +S Q ++L +DL+ + R+G I L +EF L++ L + V+ ++ I QV Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W FD TN +DV V RLR K+D F+ LI T+RGVGY+L+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLK 223 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 199 bits (507), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 142/222 (63%), Gaps = 1/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD-VNGW 60 + LI+ED+ Y+ +GL + G V + +G+ G +A+ +D+IILD MLP+ +G Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LRS K P+L+L+AL + RV+GL+ G DDYL KPFAF+EL AR+ L+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ADL ++L++R R+G + L +EF LL F ++H +++ R+++ VW Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D FD TN IDV + RLRGK+D FEP LI TVRGVGY L Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLS 252 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/221 (44%), Positives = 146/221 (66%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+++ ++L + LTEAGF +D+A NG G+ LA+ YD II+D++LP ++G Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I++ LR+ P+L+L+A G++ RV GLELG DDYL KPF AELLARV +L+RR Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q + DL +DLVSR+V R L +EF LLE+ +R++G V+ R+ I VW Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 NF TN ++V + RLR K++ +P+L+QT R GY L Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 143/221 (64%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ + + KGL EAGF VD NG G A+ G Y I+DIMLP+ +G Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I+ +R+A K P+L+L+A +++ R++GL+ G DDY++KPF+F ELL RV+ L+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ + L +DL+ ++V R G +I L +KE+ LL + + G L ++ I +V+ Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 NFD TN +DV V RLR KID F +LIQT+RGVGY+L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 147/224 (65%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDE L +GL+ G+ A++G G +A+ D D+++LDIMLP ++G Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R LR G+P+L+LTA +E +V L+ GADDYL KPFAF ELLAR+R L+RR A Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +DL+SR+V R+G ++ L+S+EF LLE+ +RH +VL R I S VW Sbjct: 120 DQPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D FD +N +DV V+ LR K+D EP LI TVRG GY + P Sbjct: 180 DYAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPP 223 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 139/221 (62%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ ED+ K +L KGL EAG+ VDLA +G LA +YD I DIM+P +G Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR K P +LLTA +E RV+GL+ GADDYL KPF+ ELLAR+R +LRR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + V+DL +DLVS R I+LT++EF+LLE + + +S I +VW Sbjct: 121 PE-MNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D ++D+ TN + V +K LR KID + EP LIQT RG+GY + Sbjct: 180 DQSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAI 220 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+++ G +LTKGL E G+ V+ A +G L G +DL ILD+MLPD++G+ Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +++R P+L+L+ALG + ++K L+LGADDYL KP F ELL+R+ L RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 AVIIESQFQV-ADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + V ADL V+L + V R+G I L++KEF L + + +Q +VL RS I V Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W N D+ TN +DV + LR KID DF KLI+TV+G GYM+ Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMI 222 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 105/225 (46%), Positives = 152/225 (67%), Gaps = 8/225 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE + ++L +GL+E G+ V+ A++G G+ L + +DL+ILD LP +G Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 ++R R N+ P+L LTA + RV GL+ GADDYL KPFAF ELLARVR LLRR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + V++E AD+ DL +++VTR GT + LT+KEF+LL FFLR+ G+VL R+ I Sbjct: 124 ASGVVLE----YADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDT 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VWD ++D +N ++V VK LR K++ P++IQT+RG GY+LE Sbjct: 180 VWDDSYDGLSNTLEVHVKELRHKLEA-CGPRVIQTLRGRGYVLET 223 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 97/223 (43%), Positives = 144/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE K ++++ L E GF VD G + + YD +LDIMLP +G Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR +PILLL+A +++GL GADDYL KPF+ EL+AR+R L+RR A Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + S ++V +L ++L++R+V R +I LT+KEF++LE +R G V R+ + +VW Sbjct: 166 GIGL-SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +FD TN +DV +++LR KID E KLIQTVRGVGY +E Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 2/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ EDE ++ +GL E G V + +G G+ + +DL+ILDI++P +NG + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 IVRMLRSA-NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + R P+++LTALGT E VKGL+ GADDYLVKPF+F EL AR++ LLRR Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +Q +L++D +R+ R I LT KE+ LLE+F+ HQG L R + VW Sbjct: 144 ETVT-NQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 202 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D NFD++TN +DV V LR KID DF+ KLI TV G+GY++ Sbjct: 203 DKNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIM 243 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 97/223 (43%), Positives = 142/223 (63%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ G + +KGL AG VVD +NG A T DYD+++ D M+PD++G Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +R LR A P++LLTALG +E RV+GLE GADDYL KPFA +ELLAR+ L RRG Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 AV--IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ L +DL+S+ T GT + L KEF LLE +R +G + R+++ + Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VWD+NF+ T+ ++ + RLR KI+ F+ + I+T+RG GYM Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMF 223 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 136/221 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI+ED+ T YL +G D A +G G HLA YDLI+LD MLP ++G Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LRS+ P+L+L+AL ++ RVKGL G DDY+ KPFAFAELL RV L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ V L ++L++R VT + + L KEF LL++ + H +V+ R+L+ VW Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD TN IDV + +LR K + P++I+TVRG GY L Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 192 bits (488), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/225 (48%), Positives = 140/225 (62%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE + L + L E + VD+A +G G LA+T YDL ILDIMLP ++G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R +R A P+LLLTA T+E RV GL+ GADDYLVKPF ELLARVR L RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +DL +R VTR+G + LT+KEF LLE F+R+ +VL + +I +VW Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + D NA++ V LR KID P I TVRGVGYM PD Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMFH-PD 224 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 192 bits (487), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ ++L G + G V + +G++G H A+T D+D+IILDIMLP +G+ Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+++L+A ++E RV+GL+ GADDYLVKPFAF ELLAR +TL+RRG Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 AVIIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ + L +DL+ + R I + +EF L++ L + V+ ++ I V Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W FD TN +DV V RLR K+D F LI T+RGVGY+L+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 104/228 (45%), Positives = 151/228 (66%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED KK E + K L GF+VDLA +G G LA++ +YD IILDI+LP ++G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 DIVRMLRSANKG-MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 +I R LR K +PIL+LTALG++E+RV+GL +GADDY+ KPF EL+ARVR L+RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V E+ + DL+++L +R+V+ G + L+SKEF+LLE F+R+ G V R I ++ Sbjct: 121 QVVRQET-LKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 W+ F+ +N +DV V LR K+ + I+TV +GY L+ D + Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKEDDK 227 >UniRef50_A9GMJ5 Two-component response regulator n=3 Tax=Bacteria RepID=A9GMJ5_SORC5 Length = 256 Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++EDE+K +L +GL E G V + ++ GDYDL+++D LPD +G Sbjct: 34 MRILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPDGDGL 93 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R LR P + LTA + RV+GL GADDYL KPF+F ELLAR+ + RR Sbjct: 94 DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARIAAVSRRAG 153 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +VADL++DL + +V R+G I LT+KEF LL G VL R+ + +VW Sbjct: 154 R---SERVEVADLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVW 210 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D+ D TN +DVA+ LR K+D F LI TVRGVGY+LE Sbjct: 211 DVGHDPGTNVVDVAISALRAKVDRGFARPLIHTVRGVGYVLE 252 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 138/222 (62%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+ ED+ + + +T+GL E FVVD +G + +A+ YD +ILDI++P ++G Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I R LR+ +PILLLTA ++ R++GL+ GADDYL KPF F EL ARVR LLRR Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRR-M 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +V++ S V DL +D ++ R G + LT++EFTLL + RH G ++ R +A VW Sbjct: 120 SVVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D N D + N IDV V RLR K+D L+ T RG G +L Sbjct: 180 DENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLS 221 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 103/232 (44%), Positives = 147/232 (63%), Gaps = 10/232 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++EDE ++ + L EAG+ V +A +G +G +A ++ LIILD+MLP +NG Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + + LR PIL+LTALG+ E+ V GL+ GADDYLVKPF AELLAR+R+LLRR Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 120 ------AAVIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + +S +VADL +DL ++ +R G I LT+ E+ LLE+ +R+ VL Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 R I VW ++F+ +T +DV V LR K++ +P LIQTV G+GYML+ Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLK 232 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 142/224 (63%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++EDE + + LT G + +A +G +G + + +D+IILD+M+P +NG Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R R+A PIL+LTALGT E+ V GL+ GADDY+ KPF AEL AR+RTL+RRG Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 AVIIESQFQV---ADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 E +V DL++D V++ V R G I LT+ EF LLE+ L + VL R I Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VWD+NF+ TN +DV + LR KID + + KLI TV G+GY++ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVI 224 >UniRef50_C3QD36 Two-component system response regulator n=8 Tax=Bacteroides RepID=C3QD36_9BACE Length = 228 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 142/221 (64%), Gaps = 2/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+EDE + L GL E G+ +A +GL G L T +DL+I DI+LP ++G+++ Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--GA 120 + +R N +PIL+LTALG+ ++ G + GADDY+VKPF F EL AR++ LL+R G Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + + ADL +DL + V R+G I L+ KE+ LL + + + VL R IA +VW Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + +FD+ TN IDV + LR KID DFEPKLI T G+G++L Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFIL 224 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 99/221 (44%), Positives = 147/221 (66%), Gaps = 2/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI++D+K + +GLT G+ V +A+ G G +L + + DLIILDIM+PD++G + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + G+PIL++T + +I RV GLE GADDYLVKPFAF EL+ARV+ LLRR Sbjct: 64 VCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 VIIESQFQV-ADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + + +DL+VDL +R+ R I ++ EF LL FF++H +VL R L+ +VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +F ++N ++V V LR K++ EP+LI TVRG GY+L Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 147/224 (65%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVN 58 MK+LI+EDEKK G L KGL + G+VVDLA +G ++ YDL+ILDIMLP ++ Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G + + LR+ N PIL+LTA +E ++ GLE GADDYLVKPF++ ELLAR+R LLRR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + +V D+ +D VS++V R I LT+KEF +LE+ +R+ ++ + I S Sbjct: 121 PKN-LMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW D+ +N ++ +K LR K++ + +I+T+RG+GY ++ Sbjct: 180 VWGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIK 223 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE+ +TK L + VD +G DYDLII DIM+P+V+G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + ++ LR + P+++LTA T+E ++ GL+ GADDY+VKPF F EL AR+R L+RR Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q+ D+++D+ ++VTR+G I LT KE+ +LE+ ++++ +L R I + VW Sbjct: 121 G-LATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D ++D +N +DV +K +R K+DN + +I T RG+GY ++ Sbjct: 180 DYDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVK 221 >UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHZ0_BDEBA Length = 224 Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 140/222 (63%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+ L+VED+ + + +GL E VD+ NG + A T YD+I+LD+MLP+++G+ Sbjct: 1 MRCLVVEDDNEIATIVKQGLGELEGDVDVESNGRRAFEKAQTNHYDIIVLDLMLPEMDGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR PIL+L+AL ++ R+KGL +G DDYL KPFA AEL RV+ LL+R Sbjct: 61 TFAKSLREKEINTPILILSALRELDDRLKGLSMGGDDYLTKPFAMAELQIRVKNLLKRSQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +Q DL ++ ++R V R+G ++ L +EF LL+ F+ + +++ + I +VW Sbjct: 121 KASEVTQLVFQDLKLNRLNRDVVRAGRKLDLQEREFVLLDLFMSNPNKIIGKQTILKEVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + +FD TN +DV V RLR K++ DF +LI TVRGVGY+L+ Sbjct: 181 NYDFDPQTNVVDVLVCRLRNKLEKDFPTRLIYTVRGVGYVLK 222 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 103/230 (44%), Positives = 138/230 (60%), Gaps = 7/230 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLIV+DE+ L +GL+ GF VD A +G G +A YD I+LDIMLP VNG+ Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++LR PIL+LTA + L+ GADD L KPF+F L+AR+R LLRR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRN- 119 Query: 121 AVIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 +ES Q DL +D S +VTR I LT++EF+ LE LR++G VL + I + Sbjct: 120 ---VESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIA 176 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 VWD +F+ D+N ++V + LR KID F K I T+RGVGY LE G+ Sbjct: 177 HVWDYDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEEDGGR 226 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 185 bits (470), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 139/223 (62%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLLIVEDE L KG E V +A +G + ++D+++LD+MLPD+NG Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I R LR++ +PILLLTALGT E+ V GL GADDYLVKPF F EL ARV L RR Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 AVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + DL ++ ++ V R G I LT+KEF LL + ++ G ++ R I V Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 WD+NFD +TN +DV + LR K+D F+ KLI T++G+GY+++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIK 223 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 144/221 (65%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE++ G+++ K LTE + L + +D ++LD+ LPD +G Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R R++ P+L+L+A + RV+GL +GADDYL KPF+ E++ARVR+LLRR A Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + + +DL+ R VT +G + LTS+E+ LLE FL++ VL R+LIA +VW Sbjct: 165 GVKT-TVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVW 223 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + ++D +TN IDV V+RLR K++ +P LI+T+RG GY L Sbjct: 224 EASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 146/221 (66%), Gaps = 4/221 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+++D+ K L + LT G+ V++A++G G ++A +L+ILDIMLP ++GW+ Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + R N PIL+L+A +E +VKGL LGADDYL KPFA ELLARV+ LLRR Sbjct: 64 ICQRFRKDN-FTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR--R 120 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + Q +DL +DL +R+V R+G +TLTS+EF LL F+ H +VL R I +VW Sbjct: 121 ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWG 180 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++F +N ++V + LR KI+ D+ ++I TVRGVGY+L+ Sbjct: 181 LDFTGGSNVLEVYINMLRQKIE-DYGSRIIHTVRGVGYVLK 220 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/227 (44%), Positives = 141/227 (62%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 + ++++EDE E L GLT G V +A G + + DL+ILD+MLPD++G Sbjct: 17 LHVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGM 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR+ ++ +PI++LTA G ++ RVKGL+LGADDY+VKPF+F ELLARV + RR Sbjct: 77 VVCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAG 136 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + QVA L ++L +R+VT G I LT EF LLE F+RH V R + S+VW Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + D+N ++V + LR KI D E KLI+TV GVGY L PD + Sbjct: 197 GFTYVGDSNIVEVHISNLREKI-GDHERKLIRTVYGVGYTLR-PDDE 241 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 137/227 (60%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLI+EDE +L +GL E F VD A +G +G L M+ DYDL ++D MLP ++G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR A +P++ LTA T++ V GL GADDY+ KPFAF ELLAR+R LR+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 L +D + + + +TLT KEF LLE+ LR+ V RS I VW Sbjct: 121 PTT--GPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D++FD+DT+ IDV V LR K++ LI+TVRGVGY++ P+ Sbjct: 179 DIHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRTPEAN 225 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 143/223 (64%), Gaps = 4/223 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+K+ + L GL E G+ +A +G G L + + L+I DI+LP ++G+++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-- 120 + +R AN +P+L+LTALG+ + ++ G + GADDY+VKPF F EL AR++ LL+R A Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +V+ + DL +D R+V R G I L+ KE+ LL + +++ V+ R IA + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW+ +FD+ TN IDV + LR KID DFE KLI T G+G++L Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFIL 226 >UniRef50_D1B4N2 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B4N2_SULD5 Length = 224 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 140/221 (63%), Gaps = 2/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVED++ +L +GL E F V+L DNG + +LA YD+IILD+M+ V G Sbjct: 1 MKILIVEDDEGIASFLKQGLEEELFSVELCDNGEDALYLAQMNPYDMIILDLMIKGVQGD 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR PI++L+A TI +V L LGADDYL KPF+F ELLAR+ LR+ Sbjct: 61 VVCQKLREQKLHTPIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQLRKQN 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E +VADL ++ V++ VTRS I+LT+KE+ LLE+ +RH+G ++ ++ Q++ Sbjct: 121 DK--EPLLKVADLELNPVTKSVTRSKEVISLTAKEYMLLEYLMRHKGAIIEEKMLEEQLF 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 ++N + V + RLR KID +FE KLI+T R +GY L Sbjct: 179 SSEQSINSNMVSVYMYRLRSKIDKNFELKLIKTHRNLGYTL 219 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 100/229 (43%), Positives = 145/229 (63%), Gaps = 5/229 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+V+D++ E L + L+ G+ V+LA +G+ + + D ++LD+M+P ++G Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LRS +PIL+LTA ++ RV GL+ GADDYL KPFA ELLAR+R LLRR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 AVIIESQFQVA----DLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 E+ VA DL +D V+R+VTR RI+LT EF LLE + + VL RS I Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML-EVP 224 +VW +F + NA++V V LR K + + EP+LI TVRGVGY+L E P Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRETP 231 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 97/223 (43%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L +ED++ T + L GF VD NG +G A++ DYD+I LD MLP V+G Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ +RS P+L+L+ALG ++ RV+GL G DDYL KPF E+ AR+ LLRR A Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 E+ V L +DL+SRKV R G I L E+ +LEF +RH G+ + R ++ V Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W +FD TN IDV + RLR KID +I+TVRG GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYILS 272 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/229 (44%), Positives = 142/229 (62%), Gaps = 6/229 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLP-DVNGW 60 +L+VEDE+ +L +GL G+ V +AD G DLIILDIMLP D++G Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R +R+A +GMPIL+LTA + RV GL+ GADDYL+KPFAF ELLARVR LLRR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 AVII-----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ ADL +D SR R RI LT++E+ LL F+RH +VL R +I Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 +VW +F ++N ++V V LR ++ EP+L+QTVRG GY L +P Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRLP 234 >UniRef50_A5FCZ9 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FCZ9_FLAJ1 Length = 230 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 141/223 (63%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+ + ++ +GL E + V G + M D+D+IILDIMLPD+ G++ Sbjct: 3 KVLLVEDDPRVASFILRGLEENLYQVKTVSKGYEAVNEVMENDFDIIILDIMLPDITGFE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + +LR+ +PIL+L+AL T +VKGL+ GADDYL KPF F ELLAR+ LRR Sbjct: 63 VCEILRNRKIIVPILILSALDTPHEKVKGLQSGADDYLAKPFLFEELLARINAQLRRAEF 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ I++ Q A + +++ + +R G + L+S+E LL FF++++ + L R IA V Sbjct: 123 SSGILDFQ-SYAGIEINMKEQSASRDGKELNLSSRELKLLIFFMKNREKALSRIAIAEAV 181 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W++ D ++N +DV + LR K+D +F LI TV+G GYML+ Sbjct: 182 WNLELDMNSNTVDVYINYLRNKVDKNFSEPLIHTVKGTGYMLK 224 >UniRef50_Q2NSR4 Putative two-component regulator protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSR4_SODGM Length = 168 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/168 (53%), Positives = 122/168 (72%), Gaps = 1/168 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+++DE K EY+ GLTE+G+VVD+A NG G +A YDLI+LD+M+P++NGW Sbjct: 1 MKILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAEEYYYDLILLDVMMPELNGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ L S P++ LTA T++ R+KGLELGADDYLVKPF+FAELLAR+RT LRRG Sbjct: 61 EVMKTLDSL-LDTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRRGM 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGE 168 E VADL +D+ R+V RSG RI LT+KEF LL+ F+ + G Sbjct: 120 NGKREELLTVADLRLDIAKRRVERSGLRINLTNKEFNLLQLFISNPGH 167 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 140/223 (62%), Gaps = 5/223 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++ IVEDE++ +L L GF ++ +NG Y M G++DL++LD+MLP ++G Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 I + +R + +PI++LTA +E +V GL++GADDY+ KPFA EL+AR+R LR+ Sbjct: 65 TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 V +E + QV +L++ +V G + LT KE++LLE+ +R++ VL R I Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +VW ++ DTN +DV ++ LR K+D+ F K I TVRGVGY Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/229 (48%), Positives = 140/229 (61%), Gaps = 10/229 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNG-LNGYHLAM---TGDYDLIILDIMLPDV 57 ++L+VED+ T L GL GF V A NG LA DL+ILD MLP + Sbjct: 5 RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64 Query: 58 NGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 +G ++R LR+ + MP+LLLTA I+ RV+GLE GADDYL KPFAFAELLARVR LLR Sbjct: 65 DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124 Query: 118 RGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 R Q VADL ++L +R VTR+G I LT +EF LL + HQGE + R +A Sbjct: 125 RFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAR 184 Query: 178 QVWDMNFDSDT--NAIDVAVKRLRGKIDNDFEP---KLIQTVRGVGYML 221 ++W N + N IDV + RLR KID + P KL+ T+RG+GYML Sbjct: 185 EIWRENNRATPIDNVIDVHIARLRRKID-EASPGAEKLLHTLRGLGYML 232 >UniRef50_Q1NA75 DNA-binding response regulator n=3 Tax=Alphaproteobacteria RepID=Q1NA75_9SPHN Length = 236 Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 134/221 (60%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 + +L+VED++ + LT AG V+ +G G + A +G +D++ILD MLP ++G Sbjct: 7 ISVLLVEDDEAARTTIAAILTAAGMTVEQTADGPTGLNRAGSGGHDVVILDRMLPHLSGI 66 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DIV +R A G P+L+L+ALG EHRV+GLE G DDYL KPF EL+ARVR L RR + Sbjct: 67 DIVTRMRLAGIGAPVLMLSALGRSEHRVEGLESGVDDYLAKPFEPDELVARVRALWRRAS 126 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ES DL + +R R G + L+ KEF L + + H GEV+ R ++ VW Sbjct: 127 RRSHESVLLFGDLECHVKARTAFRQGRHLPLSPKEFELFRYLMDHAGEVVTREMLLRHVW 186 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 ++FD TN +DV V RLR K++ F+ +++TV G GY L Sbjct: 187 KLSFDPQTNVVDVNVGRLRRKLEEGFDTPVLETVWGTGYRL 227 >UniRef50_A1SID6 Two component transcriptional regulator, winged helix family n=1 Tax=Nocardioides sp. JS614 RepID=A1SID6_NOCSJ Length = 228 Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/223 (42%), Positives = 142/223 (63%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNG 59 M++L+ ED+ + + L + L EAG+ V++A +G + Y ++ D+ +LD MLP ++G Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R LR +PIL+LTA G + RV GL+ GADDYL KPF ELLAR+R L RRG Sbjct: 61 VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + ++ E+ Q+ DL+VD V+R+VTR G I L+++EF +L + H G V+ R +I +V Sbjct: 121 S-LVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEV 179 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 WD D +N IDV + +R KID F + I T+RGVGY ++ Sbjct: 180 WDGETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGYRVD 222 >UniRef50_A0R7V0 Two component transcriptional regulator, winged helix family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7V0_PELPD Length = 224 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 140/222 (63%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK L++EDE+K ++ +GL E V + +G G LA TG+Y L+ILD+ +P+++G Sbjct: 1 MKYLLIEDERKIAGFIKRGLEEGNCQVVIVGDGAEGLRLAQTGEYALVILDLGIPEIDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LRS +P+L+LTA E V GLE G+DDY+ KPFAF EL AR+ LLRR A Sbjct: 61 SVLKELRSTGNQVPVLILTARKLPEEVVAGLEAGSDDYMGKPFAFRELRARIAALLRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S+ +L +D V+ + RSG I+L+ KE+ L+E+ +R+ ++L RS+IAS W Sbjct: 120 GRNRGSEVVFGELKLDPVTHRFWRSGNEISLSEKEYCLMEYMIRNPNQILTRSMIASNCW 179 Query: 181 DMNFDSD-TNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 F+ +N IDV V LR K+D + K+I TVRG GY+L Sbjct: 180 VNTFEGKFSNIIDVYVTYLRRKVDVGYPTKMIHTVRGKGYIL 221 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 98/222 (44%), Positives = 136/222 (61%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL++EDE L +GL + G+ VD A +G G LA +YDLIILD+ LP ++G Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+ R LR+ + IL+LTA E RV GL+ GADDYL+KPF F ELLAR+R LLRR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + Q DL +D ++ V + R+ LT KEF +L + +RHQGEV+ + ++ VW Sbjct: 121 RV-RQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 D + TN + V + LR K+ + P + I+TV GVGY L Sbjct: 180 DGTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK + + + L + F VD+ +G G ++A+ D+D++ILD++LP +GW Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I++ +R P+L+LTAL +E+RVKGL +GADDYL KPF EL+ARV+ L+RR A Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + DL++D +RKV R G I LT KE+ +LE+ + ++ V+ + + +W Sbjct: 131 EN-KNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLW 189 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + ++ + +K LR KID F+ K+I TVRG+GY++ Sbjct: 190 SFDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVV 230 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 142/235 (60%), Gaps = 11/235 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA-----MTGDYD---LIILDI 52 M +L+VED+ + ++L +GL G+ V +A +G++G A M + D +I+LD+ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP + G ++ + LR++ P+L+LTALG ++ RV GL GADDYLVKPF+F ELLAR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RTLLRRG--AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 LLRR + ++ +D + +V+R G + LT++E LLE FL G VL Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 R I S VW ++ D TN +DV V+RLR KID I TVRG+GY LE PD Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE-PD 234 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 1/219 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L++EDE K ++ LT G+ V +A +G+ G A + DL++LD MLP ++G +I Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEI 70 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LRS +P++L+TA + R GL+ GADDY+VKPF+ ELL+R+R LR+ Sbjct: 71 CRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRRS 130 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + Q DL++D V+R+VTR ++ LT+KE+ LL + + H +VL R I VW Sbjct: 131 -RDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +F D+N I+V ++ LR KI+ E +LIQTVRGVGY+L Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 138/227 (60%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLI+ED + + L +G E G VD A +G NG L +G YD +ILDIMLP+++G+ Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R +P+++LTA ++E RV GLE GADDYL KPF F EL+ARV L+RR Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S + L +D V+R+ ++ L +EF +LE +R++ +V R I +QVW Sbjct: 121 DQ-RRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +D +N +DV +K LR K+ ++ TVRGVGY + P+G+ Sbjct: 180 QKEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVANPEGE 226 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 135/221 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+++ ++ +GL G + +G G + + DL+ILD MLP V+G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +R+ + IL+L+ALG +E R++GL GADDYL KPF F ELLAR+ L RR Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + ADL + L + +V R+ I LT+KE ++LE FLR G + R I + VW Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 ++ D TN +DV ++RLR KID F LIQT RG+GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ K + + + L GF V A+ G +G ++G +D++I+D MLP+++G Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR P+L+L+AL ++ RV GL+ G DDYL KPFA EL AR+ L+RR Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ V L +DL+ R VTR G I L +EF LLE+ +R +VL R+++ VW+ Sbjct: 156 T-RETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWN 214 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 F TN +DV + +LR KID+ LIQ++RG G+ML VP+ Sbjct: 215 YRFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRVPE 258 >UniRef50_D2QPF4 Two component transcriptional regulator, winged helix family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QPF4_9SPHI Length = 223 Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 146/222 (65%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++EDE+K ++ +GL + G V DL +G G G YDL++LD+MLP G+ Sbjct: 1 MKILVIEDERKLARFIKQGLEQHGHVADLTYSGSEGLDHIAGGLYDLVLLDLMLPGQTGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ LR+ +P+++L+AL E V+GL+LGA DYL KPF F ELLAR+R L RR A Sbjct: 61 EVLQNLRAFGLTVPVMILSALSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVLQRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +VADL + LVS +V ++ + LT++EF LLE +R G+++ ++ IA +VW Sbjct: 120 TMGNDVVLRVADLEMRLVSHEVHKNNVHLELTNREFALLELLMRRAGQLVTKNEIAEKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 M+FD +N I+V + +LR KID P LI+T+ G GY L+ Sbjct: 180 AMDFDMGSNVIEVHIYQLRKKIDATGIPGLIETLIGRGYRLK 221 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 138/222 (62%), Gaps = 4/222 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE +T+ L + G+ VD A NG YDLI+LD+M+P ++G Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R+A P+L+LTA ++ VKGL+ GADDYLVKPF F ELLARVRTL+RR + Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S+ +L +DL + V SG +I LT KE+ +LEF + ++G +L R I VW Sbjct: 121 GN-VASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D ++ +N IDV +K +R K+ E + IQT RG+GY+++ Sbjct: 180 DFDYTGGSNVIDVLIKNIRKKLG---ECEAIQTKRGLGYVVK 218 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 5/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VEDE+K +++ +GL F V +G GY A +D+IILDIMLP +G Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R LR PI+LLTA + RV+GL++GADDYL KPF EL AR++ LLRR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +V L +D ++R + G + LTS+EF+LLE +R +VL R + VW Sbjct: 121 GT-QQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKL---IQTVRGVGYMLEV 223 +FD TN +DV +KR+R K+ + + K+ I+++RG GY L + Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLSI 226 >UniRef50_Q1NHM9 DNA-binding response regulator n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHM9_9SPHN Length = 224 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ + ++ L G + G G A + ++D++I+D MLPD+ G Sbjct: 1 MRILLIEDDAEMAGFIADALAAQGQDTVIEAEGRQGLRRAQSENFDVLIVDRMLPDMEGA 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V +R PIL+LT+LG IE RVKGL GADDYLVKPFA AEL AR+ L RRG Sbjct: 61 QLVSQMRDLGLSEPILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + ++ + +D V R+ R G RI L +EF LLE +R Q +V+ R+++ QVW Sbjct: 121 SGLSDT-GACGTIKIDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD TN ++ + RLR K++ F+ IQTVRGVGY L Sbjct: 180 HFHFDPQTNIVETHMSRLRQKLNAGFDCDPIQTVRGVGYKL 220 >UniRef50_B1ZUL4 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B1ZUL4_OPITP Length = 226 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 133/224 (59%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++EDE + ++ + LT G V +G G + DL++LD+ LP V+G Sbjct: 1 MRILVIEDEAQLARHIVRALTRHGHVASAELDGEKGLQSVLRDPPDLVVLDLNLPGVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR AN +L+LTA +EHRVKGL+ GADDYL KPF+ EL+AR+ L RRGA Sbjct: 61 AVLARLREANSPARVLILTARSEVEHRVKGLKAGADDYLPKPFSLDELVARIEALGRRGA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +VADL +D+ R+V+R+ + L+ +EF +L+ ++ G V R+ + +VW Sbjct: 121 TPTAADFLKVADLQMDVQHRRVSRAARPVALSPREFDVLQVLMQEPGRVFSRTELCERVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + DT +++ + RLR K+D+ F LI T+R +GY + P Sbjct: 181 QRDHQYDTRTVEIFIARLRKKVDSGFNAPLIHTLRSIGYTIRGP 224 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/219 (45%), Positives = 137/219 (62%), Gaps = 1/219 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE K +++ L G+ V + ++GL+G A + DLI+LD MLP ++G DI Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LR +PI+LLTA I RV GL+ GADDY+VKPF ELLARVR LRR Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + Q DL ++ +R+V R I LT+KEF LLE+ + H +VL R I +VW Sbjct: 126 DPD-LLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGY 184 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +F D+N I+V V+ LR K++ + E +LIQTVRGVGY+L Sbjct: 185 DFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 144/224 (64%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VED+++ +L KGL+EAG+ + LAD+G L T D+D+I++DIMLP ++G Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +++R PIL+L+AL + + ++K L++GADDYL KPF F EL++R++ L RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 121 -AVIIESQF-QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + E Q+ ++ +D KVT++ I + E+ L F + ++ +VL R+ I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW ++FD+ TN +DV + +R KID + E K+I TV+G GY+++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKID-ETEQKIIHTVKGTGYLIK 223 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 3/221 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K LIVED++ E L KG GF VD+A +G A T YD+IILD+++P ++G Sbjct: 3 LKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGV 62 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR ++ +PI++LTA +E +++GLE GADDY+ KPF+F EL+ RV+T+LRR Sbjct: 63 KVCKQLRLQSE-IPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYN 121 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V E + + DL +DL KV G I LT KEF LL+ ++ + + R ++ ++VW Sbjct: 122 KV-QEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + D D+N +DV +K +R K++ D PKLI T+RG GYML Sbjct: 181 GIASDYDSNIVDVYIKNIRNKLE-DKPPKLILTIRGRGYML 220 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 138/221 (62%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + ++ KG + G++ +++ +G +G T +D ++D+MLP ++G Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +R + I++L+A ++E +V+ L GADDYL KPFA +ELLARV ++RR + Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + A + +DL++ R G RI L +EF LLE +R++G L + + ++W Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD TN +DV V RLR K+D F+ KLI T+RG+GY+ Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVF 227 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 ++LL+VED+ LT LT+AG+VVD A +G G+ L T YD ++LDI LP ++G Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R + MP+L+LTA +V+G + GADDY+ KPF E+LAR+R LLRR A Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +S+ +++D + +V+ G + LTS E+ LL + + H G V+ R+ + ++ Sbjct: 149 G-HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLY 207 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D +FD D+N I+V V R+R K+D D +IQTVRG+GY+L P Sbjct: 208 DQDFDRDSNTIEVFVGRIRKKLDVD----IIQTVRGLGYLLTPP 247 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 136/226 (60%), Gaps = 7/226 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD--VN 58 M++LIVEDEKK +++ L G+ +D+ N GY +A T YD +I+D M+P + Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G D+++ LR P ++LTALG ++ GL+ GADDYL KPFA ELLAR+R +LRR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + +V L +D +R V +I LT+KE+ LL++ ++ G+ L + I Sbjct: 121 PKKAQ-PTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEH 179 Query: 179 VWDMNFDSD--TNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW NFD+D N ++ +K LR KID ++ K I+TVRG+GY LE Sbjct: 180 VW--NFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223 >UniRef50_C6W0A8 Two component transcriptional regulator, winged helix family n=4 Tax=Flexibacteraceae RepID=C6W0A8_DYAFD Length = 231 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 143/222 (64%), Gaps = 3/222 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+ + + + + L F D+A +GL G +A+ G YDL++LDI LP +NG+D+ Sbjct: 7 VLIIEDDLRIAQNIYRVLQSENFNADIARDGLTGKKMALDGRYDLVLLDINLPGMNGFDV 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R + +P+++LTA G IE +V+GL GA DY+VKPF EL+AR+ LR A Sbjct: 67 CRHIGEFKPLLPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRLSDAG 126 Query: 123 IIESQFQV---ADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 +++ +V ADL +++ ++ VTR+G I LT+KEF LLE+FL + G V+ + + + Sbjct: 127 RLDAGNRVLGIADLQLNVDTKVVTRAGKFIGLTAKEFALLEYFLLNPGTVISKMDLVKNI 186 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W +NFD TN ++V + LR KID F+ KLIQT G+GY+L Sbjct: 187 WHLNFDPGTNFVEVYINYLRKKIDKGFDVKLIQTRPGLGYIL 228 >UniRef50_A5FFW8 Two component transcriptional regulator, winged helix family n=3 Tax=Flavobacteriales RepID=A5FFW8_FLAJ1 Length = 220 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LIVEDE ++L +GL E G+ + A++G G+ L +DLI+LD MLP +NG Sbjct: 1 MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+ + +R +K PI+ LTA T++ ++GL GA+DY+ KPF+F EL+ RV+ R A Sbjct: 61 DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFRNKA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + ++ VDL V ++ I LT +EF LL + +R +G+V R+ I VW Sbjct: 121 T---DEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVW 177 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 D+NF+ DT IDV + +R K++ E I+T+RG+GY+ Sbjct: 178 DINFEYDTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGYI 217 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 125/218 (57%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 LL+VEDE ++ +GL E G+ V + G G A G DL++LDI LPD++G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR +PIL+LTAL +E RV+GL GADDYL KPFAF ELLAR+ LLRR Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L++D +R T G + LT EF LL F + G+ L R I +VW Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +FD TN IDV V +R K+D I+TVRG+GY Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGY 223 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE++ + GL + GF V+LA +G G DYD I+LD+MLP ++G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR+A PIL+LTA E GL LGADDYL KPF++ L+AR+ LLRR A Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V DL++D R V R T I LT +EF++LE+ +R+ G ++ I VW Sbjct: 121 PA-RPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD + N ++V V LR KID F I+TVRG GY++ Sbjct: 180 GADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLM 220 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 132/227 (58%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+VEDE K L + LTE G VD +G + GDYD ++LD+MLP ++G+ Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR P+L+LTA G + R+ GL+ GADDYL KPF EL AR+R L RRG Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG- 141 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +D +V R+ T I L+ KEFTLLE +R G V R+ + + W Sbjct: 142 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 201 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D +++ +N +DV ++ LR KID F ++T+RG GY L G+ Sbjct: 202 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGR 248 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 6/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ L L E + VD A +G G+ A+ +YD+I+LD+MLP ++GW Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + ++ LR K P+L+LTA ++ RVKGL GADDYL KPF ELLAR+R L+RR A Sbjct: 72 EFLQKLRP-TKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +D +RKV G + +T++E+TL+E+ HQGEV+ R+ + ++ Sbjct: 131 GQ-PQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLF 189 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D + + +N +DV V LR K+ P+LI T RG GY +E Sbjct: 190 DEDDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE+K L L G+ V + NG G A G Y L++LD+MLP ++G ++ Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 +R LR + P++LLTA +I +V GL++GA+DY+ KPF ELLAR+R LR+ Sbjct: 66 LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125 Query: 123 I--IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 I + DL V+ +R+V R + LT +EF LL + L+H +VL R I S VW Sbjct: 126 TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++ DTN +DV ++ +R K+D +E +LI T+RGVGY ++ Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_A9BRL1 Two component transcriptional regulator, winged helix family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BRL1_DELAS Length = 230 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 145/226 (64%), Gaps = 2/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIV+ + +YL +GL + GF VD+ +GL G +LA++ Y L++LD+ LP +G Sbjct: 1 MKILIVDAHPPSAQYLCQGLCQDGFNVDVVHDGLQGRNLALSRAYSLLVLDLDLPGQSGR 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ L A P +++TA ++E +V L+ GADDYLVKP LAR R L RG+ Sbjct: 61 AVLQTLLQAGD-TPTIVVTANDSLEDQVFCLQNGADDYLVKPVRLPVFLARAR-LRMRGS 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + +ADL++DL ++V R+G R+ LT +EF +L L+ QG+V+ R+ + QVW Sbjct: 119 AGQEGLRLTLADLVLDLSKKRVERAGRRLDLTRQEFAVLWLLLQRQGDVVTRAELVQQVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 + D+ N +DVAV RLR K+D+ + KL+ TVRG+GY+L + DG Sbjct: 179 SLPVDALNNVVDVAVCRLRSKLDDPYAVKLLHTVRGMGYLLALRDG 224 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 13/231 (5%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L EDE K ++ GL E GFVV+ D+G Y A+ +YD+I+LDIM+P +G Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + P++LLTA ++ R++GL LGADDY+ KPF EL+AR+ ++RR A Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVT----------RSGTR--ITLTSKEFTLLEFFLRHQGE 168 + V +D ++R VT GT+ + LT++EF LLE+ +R G Sbjct: 121 GE-QPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGR 179 Query: 169 VLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 V R+ + VW +F+ TN +DV ++RLR KID + I++VRGVGY Sbjct: 180 VFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGY 230 >UniRef50_Q2IGB7 Two component transcriptional regulator, winged helix family n=5 Tax=Cystobacterineae RepID=Q2IGB7_ANADE Length = 227 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 133/227 (58%), Gaps = 4/227 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL+VEDE + L +GL E G VD+ GL A + YD+++LD LPD++G Sbjct: 1 MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLGAREQATSIAYDVVLLDWSLPDLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R RS P+LLLTA G+ +V GL GADDYLVKPF F ELLAR+ L RRG Sbjct: 61 SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELLARIEALHRRGG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + + + + +D R + TLT++E+ L+ RH GEVL R+ + VW Sbjct: 121 ATDVSA---LGPVTLDARRRALVVGARSETLTAREYGLVAELARHAGEVLSRTRLIETVW 177 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYMLEVPDG 226 F+ ++N +DV V LR K++ P + I++VRGVGY L VP G Sbjct: 178 GQEFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRLVVPPG 224 >UniRef50_Q7M9V5 TRANSCRIPTIONAL ACTIVATOR PROTEIN COPR n=1 Tax=Wolinella succinogenes RepID=Q7M9V5_WOLSU Length = 224 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 130/219 (59%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+ L K L + + +D+A + HL YDLI+LD+MLPD NG Sbjct: 1 MKILLVEDDLDLSLVLKKALQKELYTIDIAPCLADASHLLTHFRYDLILLDLMLPDGNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR+ +G+P+++LTA TI RV GL+ GADDYL KPF+ AEL+AR+R LR Sbjct: 61 TFCQKLRARGEGIPLIILTAKDTIMDRVFGLDSGADDYLAKPFSLAELMARIRARLRNPI 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ADL +D ++KVTR G I LT KE+ LLEF +Q L +I + Sbjct: 121 TPENPLALKIADLEIDQRTKKVTRGGKLILLTPKEYRLLEFLALNQDATLSEEIIKEALL 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 D + +N I V + RLR KID D KLI T+RG+GY Sbjct: 181 DFEEQTLSNVISVYIYRLRNKIDKDHSVKLIHTLRGIGY 219 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 141/226 (62%), Gaps = 6/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LIV+D+ + ++L + L + ++ A+NG YDLI+LDIMLP ++G Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R A P+L+LTA G +E RVKGL+ GADDYL KPF+ AEL+AR+R LLRR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ L ++ +SR VT I+LTSKEF++LEF L ++G + R +A VW Sbjct: 126 KR--DTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVW 183 Query: 181 DMNFD--SDTNAIDVAVKRLRGKID--NDFEPKLIQTVRGVGYMLE 222 FD S +N +DV +K LR KI D P +I+T+RG+G++++ Sbjct: 184 GNEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIID 229 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE+ K L VD NG T YD+I++DIM+P ++G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R+ P+LLLTA +++ +V L GADDYLVKPF EL AR+ L RR A Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ V L +++ R V R G ITLT+KEF LL + ++ VL R I VW Sbjct: 121 RH-AQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + +++S +N IDV +K LR KID D KLIQTVRGVGY+L+ + Sbjct: 180 EYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTEN 224 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL +ED + + + + LT G VD A + G LA YD +ILDIMLP +G Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ R P+LLLTAL ++E RV+GL GADDYL+KPFA EL AR+ L+RR Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +S+ +V L +D +R V+R G +TLT++EF LL+ RH G++ R I ++++ Sbjct: 121 GK-PDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +NA+D AV LR K+ P+LI T RG+GY+L Sbjct: 180 SETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+VED+ G + GL + G+ V L NG++ ++ +D+MLP++ G+ Sbjct: 19 LKILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGF 78 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I R LR +P+LLLTA +E RV GL+ GADDYL KPFAFAE AR+R L+RR Sbjct: 79 EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A ++ ++ +L +D + + T +G + ++SKEF LL H GE L RS I S+VW Sbjct: 139 AA-GKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVW 197 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D N +D V LR K++ I TVRGVGY L Sbjct: 198 GTTAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALSA 240 >UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUD1_SULAA Length = 222 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 149/222 (67%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI+EDEKK G+ + KGL E F+VDL G T YD IILD+MLPD++G Sbjct: 1 MKVLIIEDEKKLGKLIKKGLEEESFIVDLVHTGKEALDFLTTQSYDAIILDLMLPDISGK 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++ +R+++ P+++LTA ++ +++ L+ GADDY+ KPF F ELLAR+R ++RR Sbjct: 61 DVLIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 I S + DL +DL V +SG I L+SKE+ LL +F+ ++G++L + + + V+ Sbjct: 121 D-IKSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D++F+ ++NA++V + RLR KI+ D K I+++RG+GY+ + Sbjct: 180 DLSFELNSNALEVLISRLRSKIE-DENHKYIKSIRGLGYIFD 220 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVD-LADNGLNGYHLAMTGDYDLIILDIMLPDVNG 59 M +L+VED+ K G + L++ V+ +AD L ++ T YDL ILD M+ +G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTY-YDLYILDWMMQKKSG 59 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 ++ +R++N PIL+LTA I+ RV GL GADDYL+KPFAF EL AR+ L RR Sbjct: 60 LELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRI 119 Query: 120 AAVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + Q + A + +D ++ +V R G +TLT KEF LL+FFLRH +VL R I + Sbjct: 120 PVSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNY 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW ++ NA+D A+K LR K+D F KLI VRGVGY L V Sbjct: 180 VWGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRLYV 224 >UniRef50_UPI0000164CF1 response regulator n=1 Tax=Deinococcus radiodurans R1 RepID=UPI0000164CF1 Length = 243 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 98/248 (39%), Positives = 141/248 (56%), Gaps = 28/248 (11%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD--VN 58 M+ L+VEDE L L EAG+ VD A + LA + +D +++D+ LP+ + Sbjct: 1 MRFLVVEDELDIRRPLVANLREAGYAVDEAGSAAEARELAGSFPFDALMVDVGLPEGPLA 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G+D+VR LR+A K P+L LTA ++ R+ GL+ G DDYLVKPF E+ AR+R L+RR Sbjct: 61 GFDLVRDLRAAGKASPVLFLTARDSVTDRITGLDAGGDDYLVKPFHLGEVQARLRALVRR 120 Query: 119 GAAVI--------------------IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTL 158 G A S +++A L +D SR V RSG R+ LT+KEF+L Sbjct: 121 GRAEAQSARSWRDCGWTGQAAPCSGAASGWRLARLRLDWTSRAVFRSGERVALTAKEFSL 180 Query: 159 LEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVG 218 LE H G V R + +VWD FD+++N +D V+ LR K+ ++ ++QT+RGVG Sbjct: 181 LEVLASHPGRVYTRDELIDRVWDGRFDAESNVVDTYVRNLRRKLGDE----VVQTMRGVG 236 Query: 219 YMLEVPDG 226 Y PDG Sbjct: 237 YSF--PDG 242 >UniRef50_C6JKI6 DNA-binding response regulator n=3 Tax=Bacteria RepID=C6JKI6_FUSVA Length = 225 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 142/224 (63%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LI + + + +YL KGL EAG+ V+ + + + Y+ A++G+Y+L+ILD ++ D +G Sbjct: 1 MNILIAQKDMEIKKYLKKGLKEAGYSVEESSDWEDTYYHAISGNYELVILDSIIEDKSGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLA--RVRTLLRR 118 ++ +R N I+ +++ +E +V+ + GADDY+ KPF+F ELL R Sbjct: 61 ELCGKIRKENTESGIIFISSEDRVEKKVEAFDAGADDYVTKPFSFIELLGRIRAIIRRTI 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +V+ + + DL ++ ++R+V R I LT KEF+LLE+ +R++ VL R++I + Sbjct: 121 KTSVVGNNIITIKDLSINFLTREVRRGNKIIELTYKEFSLLEYLVRNKNLVLSRTMIKEK 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +W +NF S+TN +DV + LR KID + + KLI TVRGVGY+L+ Sbjct: 181 IWSINFTSNTNIVDVYMTHLRSKIDKNHKEKLIYTVRGVGYILK 224 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 136/226 (60%), Gaps = 7/226 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE + ++ KGL GFV +A + LA+ G +DL+ILD+ LP +G Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR + +PI++LTA I ++ E GADDYL KPF F ELL RV+ LR Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 VII---ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 V ES + ++++DL +RKV + L+++EFTL E F RH G+VL R + + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW ++D +N +DV V LR K+ N+ LI+TVRG+GY L++P Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNE----LIETVRGMGYRLKLP 224 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+ EDEK+ E L GL E G V + NG++ +AM+G++D ++LD+MLP ++G+ Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR + +PIL+LTA ++GL+ GADDY+ KPF+F+ELLAR+R + RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR-T 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S DL +D S +V R I LT EF LL+ +++ G + R + VW Sbjct: 120 GPHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 + + N +D ++ LR K+D PKLIQTVRG GY Sbjct: 180 GYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 138/222 (62%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+++D+K + L + L EAG VV+ A +G +G + A ++DL+ILDI LPD NG Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR+ +L+LTA +++ +VKGL+ GADDYL KPFA EL AR+R L RR Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + A + D VS +V T I LT+ E+ +LE+F+ + G ++ RS++ +W Sbjct: 121 LRVL-PVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 S +N ID +K+LR K+ D + I+T+RG GY L+ Sbjct: 180 GAESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRLD 221 >UniRef50_B2IER4 Two component transcriptional regulator, winged helix family n=9 Tax=Proteobacteria RepID=B2IER4_BEII9 Length = 277 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 133/221 (60%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 + +L+VEDE + LT+ G+ V + + G G A + L+I+D MLP+ +G Sbjct: 55 VSILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRMLPETDGL 114 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR P+L+++ALG+++ +++GL+ G DDYL KPFA EL ARV LLRR A Sbjct: 115 TLIETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPA 174 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + +V L +DL+ R V R+ + L +EF LLE+ +R G+ + R+++ VW Sbjct: 175 AEARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVW 234 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + NF TN +DV + +LR KID E ++I++VRG G+ L Sbjct: 235 NYNFLPQTNLVDVHIGKLRKKIDQPGEVQMIESVRGAGFRL 275 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ ED+ LT L G+ V+ +G + AM YDLI+LD+MLP +G+D Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + G+PIL+LTA G + +V GL+ GADDYL KPF ELLAR+ LLRR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + FQ+ + VD +VTR+G +TL+++E+ LL + + H GE + R + +QV Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 W + +DT +DV V LR K+ +N P+ +QTVRG+GY L Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 2/219 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL+VEDE YL L GF D+ +GL+G A+T +YDLI+LD+MLP+++G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R K +PI+++TA G + V GL+ GA+DYL KPFA EL AR+R LLR+ + Sbjct: 73 CRRIRET-KDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + V L + +R+V I LT +EF LL + ++++ + + R I + VW Sbjct: 132 A-NQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGF 190 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +F +TN +DV ++ LR KI++D KLI TVRG+GY L Sbjct: 191 DFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ + L + L A + +D+A +G G + + YD I+DI LP ++G Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR PIL+LTA + + +V GL+ GADDYL KPF ELLAR++ L+RR A Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S V+L S +V R + L+S E+ L EF + H GEV +S++ ++ Sbjct: 121 GK-ASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD D+N I+V ++RLR K+D D + +LI+T+RG GY L Sbjct: 180 DQDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 135/221 (61%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL++ED + + L GL +AG+VVD A +G G LA YDLIILDIMLP +NG+ Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ +L+LTA +E RV GL GADDYLVKPF F ELLAR+ LLRR A Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ +L ++L S++V+ SG ++L +E+ LLE ++ V+ R I +++ Sbjct: 121 GC-ASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D + +N +D A+ LR ID+ P I T RG GY + Sbjct: 180 DDKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220 >UniRef50_B0TXI9 Response regulator receiver protein n=14 Tax=Francisella RepID=B0TXI9_FRAP2 Length = 229 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 140/224 (62%), Gaps = 4/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ +D+KK +++ E G LA +G L T +YD++++D M+P ++G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++++LR N +P+++L+AL + E++++GL G+DDYL KPF+ EL+ RV L +R Sbjct: 66 LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125 Query: 122 VIIESQFQ---VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 I E+Q D+++D ++ +V R+ I L +E+ +L L+H+ EV+ +++I + Sbjct: 126 -IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKE 184 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VWD +FD TN ++V + RLR K+ + P I+T+RG GY+++ Sbjct: 185 VWDYDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVIQ 228 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDEK L + L +GFV DL +G L T YD IILD+ LP +G Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ RS P+L+LTA G + +++GL GADDYL KPF AEL+ARV+ L+RR A Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A S ++ + +D+ + +V GT I LT+ EF +L + ++H+G+V+ RS + ++ Sbjct: 120 AGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD D+N ++V + R+R K D LI+TVRG+GY + Sbjct: 180 AQDFDRDSNTVEVFIGRIRKKTHAD----LIETVRGLGYRI 216 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+DE + + L + LT G++VD+ NG +G LA T YDL+ILD MLP+ G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I + LR K +P+L LTA T++ RV+GL+ G DDYLVKPF ELLARVR LLRR + Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + I + V DL +D+ ++ R G I L+ KE LL++F+ + ++L I Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +W ++N I ++ LR KI+ E LI TV G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGY 253 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 139/224 (62%), Gaps = 4/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++ED+K+ E++ KGL E F V LA+ G L +D+I++DIMLP ++G Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V+++R PIL+L+AL + +V L+ GADDYLVKPF F EL++RV L RR Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 AVIIESQ--FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 E + + L ++ KVT + I L+ +E+ LL + L ++ +V+ R+ I + Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW +N+D++TN +DV + LR KI+++ K I T++G+GYML+ Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNH--KFIHTIKGIGYMLK 222 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ LT L AG+ V A +G A + DLI+LD+MLPD +G+ + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA- 121 R LR+ P+L LTA +E R+ GL G DDY+ KPF E+L RVR +LRR A Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 122 ---VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + A L +D + +V +G+ + L+ EF LL FL H VL ++ I + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW +F DT +D VK LR K+D+ P L+ TVRGVGY L +P Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRLP 238 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 132/226 (58%), Gaps = 2/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVED++ LT LT + V++ +G+ + L T DYDLI+LD++LP ++G Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +RS+ + MPILLLT + + GL+ GADDY+VKPF EL+ARVR LLRRG Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +L +D S +V + ++LT KE+ LLE FLRH V S+I +W Sbjct: 121 TT-AQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPD 225 A+ +K LR K+ N P L++TV G+GY L+ + Sbjct: 180 SYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQE 225 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 8/144 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+ +D+ L L + G+ V G A T D+I+LD+++P +NGW+ Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 VRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL---- 116 + ML+ + K +PI++ + + + D++ KP + LL +R + Sbjct: 1441 MAMLKESTETKHIPIVICSVYKPTTNNQPSSDFV--DWISKPVQESYLLHSLRQAIAKSS 1498 Query: 117 RRGAAVIIESQFQVADLMVDLVSR 140 RR +I+E +A+L V L R Sbjct: 1499 RRVRILIVEDDADLAELFVTLFER 1522 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L V+D+ + L L G V D+ + + DL+ILD+ +P NG + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 IVRMLRSANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 + +++R+ + +PIL LT E + +GADD++ KP EL+ R+ L R Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 142/235 (60%), Gaps = 12/235 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE+K ++ L G+ V A NG +A++GD+ LI+LDIMLP +NG ++ Sbjct: 11 ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLEV 70 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL------ 116 +R L+ K P++LLTA + +V GL+ GA DY+ KPFA ELLAR+R L Sbjct: 71 LRRLQQ-EKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDT 129 Query: 117 RRGAAVIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 RR A E + ++ L + +VT GT I LT++EF +L+ L +Q VL R Sbjct: 130 RRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTRE 189 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML--EVPDG 226 ++ ++V ++ +TN +DV ++ LR KID F+ K+IQTVRGVGY++ E PD Sbjct: 190 VLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVIKSEAPDA 244 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE + L +GLT+ G V LA +G G LA + +D I+LD+ LPD++G+ Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 ++ LR MPI+++TA I R++GL+ GADDYL KPFAF ELLAR+ + RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 G V + + V DL D + +TR+GT + LT KE +L + G V+ R+ I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW M D TN ++V + RLR K+ + P +++ VRG GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKL-HALGPPVVENVRGFGYRL 225 >UniRef50_D2QLY6 Two component transcriptional regulator, winged helix family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLY6_9SPHI Length = 226 Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+++ + + L + L+E + ++LA +G +G + + +D+I+LD LP +NG Sbjct: 1 MKILLIQSDADYLDVLHRTLSERQYTLELASDGYSGLAMGLHARFDMIVLDTHLPRMNGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTL-LRRG 119 D++R LR N P+LLL+ G + +GL GADDYLV+P ELLAR+ L RR Sbjct: 61 DVIRRLRQENDSTPVLLLSRFGESADKARGLYAGADDYLVRPCDSDELLARIYALHRRRT 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 S V +L +++ + R+ RI LT++EF LLEF +++ G V+ ++ I +V Sbjct: 121 GGFNAPSILTVDNLELNIAEKVAYRANQRIRLTAREFQLLEFLIKNAGRVVTKAQILEKV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 WD S TN ++V + LR KID DF+ KLI T GVGY+L Sbjct: 181 WDNPTVSSTNKVEVYINFLRKKIDRDFDHKLIHTAMGVGYLL 222 >UniRef50_C4F9Y6 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F9Y6_9ACTN Length = 245 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 136/223 (60%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED + E + + L ++G+ D+A G +G +A+TG YD+++LDIMLPD++G Sbjct: 16 MRVLLIEDTPRLAEAVAEILRKSGYGADVAHIGADGLAMALTGAYDVLLLDIMLPDMSGM 75 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R LR A +P++LLTA + RV GL+ GADDYL KPF +ELLAR+R + RR A Sbjct: 76 DVLRKLREAGSVVPVILLTARQGVGDRVAGLDAGADDYLPKPFHASELLARIRAVTRRPA 135 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRIT--LTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + L++D+ V G + LT KE LLE F+ G + +S +A + Sbjct: 136 TYRPNNAIEACGLVLDVEKLSVQARGGAVAVELTPKEALLLEAFMGRSGSPVSKSDLAVR 195 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +W + N I+V V LRGK++ P I+TVRGVGY L Sbjct: 196 LWGPHVSLVDNRIEVLVHALRGKLEKLESPARIETVRGVGYRL 238 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 96/237 (40%), Positives = 133/237 (56%), Gaps = 12/237 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+DE L L G+ V A +G G DL++LD+++P ++G Sbjct: 15 EVLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLT 74 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 R LR+A+ +P+L+LTA RV GL+ GADDYL KPF ELLARVR LLRRGA Sbjct: 75 ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134 Query: 122 VIIESQ------------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEV 169 ++ + DL +D ++R+VTR+G I LT E+ LLE FL H + Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194 Query: 170 LPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 L R I VW +F+ +N++DV V +R K + D P+L+QTVRGVGY L G Sbjct: 195 LTREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYALRTASG 251 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 141/224 (62%), Gaps = 4/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L++ED+ K L L GF V A +G G ++A G YD+I+LD+MLP ++G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-GA 120 + + +R ++ +PI++LTA I +V G + GADDY+ KPF+ ELLAR++ LLRR Sbjct: 64 VCKRIRETSQ-VPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTR--ITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +V+ + F+ DL ++ + +V R + I L+ +EF LL+F + ++G VL R I + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW ++ + N +D+ +K LR KID +E K IQTVRG+G++ + Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ T +++ LT+ + VD +NG G LA YD+I+LDIMLP ++G Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LRS PILLLTA V GLE GADDYLVKPF +AELLAR++ L RRG Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V+ + + +L+++ + +VT G + LT E++LLE FLRH V R +I Q+W Sbjct: 121 QVLPDV-LRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYML 221 ++ I +K LR K+ +I+TV G GY L Sbjct: 180 TLDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 2/112 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 L++++D+ E L LT GF V N + + + DL+ILD+ +P +G ++ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 VRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +R ++ +PIL L+ E + L GAD YL K A EL+ + Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELIECI 621 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 143/223 (64%), Gaps = 7/223 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+ LIVED+ L L + G+ VD A +G +G H A+ +YD+I+LD MLP ++G+ Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+++ LR+ K P+L+LTA + RV+GL+ GADDYLVKPF ELLAR+R L+RR A Sbjct: 61 DLLKQLRT-KKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 AVIIESQFQVAD-LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ES ++ + ++L+ RKV R I LT++E+++ E+ H+G V+PR+ + + Sbjct: 120 GE-SESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHI 178 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +D N +S +N +DV + LR K+ D +I+T RG+GY++ Sbjct: 179 FDENDESLSNLLDVHISNLRRKLGRD----VIETRRGLGYIIH 217 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE K ++ L G++VD +G G A+ G YDLIILD+MLP +NG + Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R LR ++ +P+++LTA I +V GL++GA+DY+ KPFA ELLAR+R + + + Sbjct: 65 VLRRLRQISE-IPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 VIIESQFQ--VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ L +D+ VT + I LT KEF LL++ + ++ L R I +V Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 W ++ DTN +DV ++ LR KID+ F K I T+RG+GY Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGY 223 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 138/219 (63%), Gaps = 3/219 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L++EDEK ++ L G+ ++A +G+ G + DL+ILD+MLP ++G ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R + PI++LTA I+ +V+GL+ GADDYL+KPF+ ELLARVR LRR Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + + +VADL+++L R++ R G R+ L++KEF LLE R+ G+V R I +VW Sbjct: 126 VT-GEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP- 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + +N +DV + LR K++ E +LI TVRGVGY+L Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 138/232 (59%), Gaps = 13/232 (5%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADN---GLNGYHLAMTGDYDLIILDIMLPDV 57 MK+LI+ED+ + + + + L EAG+ +A + G+ + + +T YDL++LD+MLP + Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVT--YDLVVLDLMLPGL 58 Query: 58 N-------GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLA 110 + G + R +R + +PIL+LTAL + +V+GL+ GADDYLVKPF ELLA Sbjct: 59 DVAGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLA 118 Query: 111 RVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 RVR LLRR V + +D +R R G RI LT+KEF +LE+ +R+ G ++ Sbjct: 119 RVRALLRRSPQAQA-PVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIV 177 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + WD N++ +N + ++ LR K+ EP +I+T RG GY++E Sbjct: 178 SSTELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 136/230 (59%), Gaps = 9/230 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG-DYDLIILDIMLPDVNG 59 +++L+V+DE E L L G+ V++A +G +G A + + DLI+LD LPD +G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 DI + +RS+ PIL+LT I RVK L+ G DDYLVKPF+ EL+AR+R + RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 AAVIIESQFQVAD--------LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 +Q AD L ++ +R V RSG +I L+ KE+ LL F +R G+VL Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 RS I VW +F D N +DV ++ LR K++N P LI TVRGVG++L Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFIL 241 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + +L +GL G+ + A +G G LA GD+ LI+LDIMLP +NG Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + LR +PI++LTA+ + +KGL LGADDY+ KPFA+ ELLAR+ + RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 AVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 I + + L D S V+ I+LT KE +LE + + G+ L R I S V Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 W M D TN +DV + +LR K+ + + +I+T RG+GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMR9_LYSSC Length = 225 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ ED+ + + + L + V DNGL+ + +DL+ILD M+P ++G Sbjct: 1 MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + LR IL+LTA ++GL+ GADDYLVKPF ELLAR+R +LRR Sbjct: 61 EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V IE QV +L +++ SR R T I LT EF LLEF ++G VL R I +W Sbjct: 121 KV-IEQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD N++D VK +R KID E IQ VRG+GY L Sbjct: 180 GYDFDVSNNSLDALVKLVRKKIDTSHEKSHIQNVRGIGYKL 220 >UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bacteria RepID=A5N1L7_CLOK5 Length = 228 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK E + + L + VDL NG +G ++G YD+IILDIMLP ++G Sbjct: 1 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P++LLTA G E +V+GL+ GADDYL KPF ELLAR+R L RR + Sbjct: 61 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ E + D+ +D ++ +++ LT KE LLE ++ +G ++ +++I ++W Sbjct: 121 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV-PDGQ 227 D + N ++V V LR K+ N IQTVRG GY++ + DG+ Sbjct: 181 GYETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVIGIEKDGK 228 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+D++ + L+K L +VVD+A +G +G++ + +Y L+ILDIMLP +NG Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LRS N MP+LLLTA + E +V GL+ GADDYLVKP EL+AR+R LLRR A Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL ++ +++ + + LT KE+ L+E F+R V I +W Sbjct: 120 TISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 + + N + +K LR K+ D +PKLI+ V G+GY ++ Sbjct: 180 SIEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 ++ + D+ + E L L G V + + + + DL+I+D+ +P NG D+ Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDL 547 Query: 63 VRMLRSANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 +++R+ + +PIL+LT E R + GADD++ KP EL+AR+ + L R Sbjct: 548 CQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADN-GLNGYHLAMTGDYDLIILDIMLPDVNG 59 M++L+V+D++K L +GL E G+ V+ A + + H + L+ILD MLP +G Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAHNCYA--FSLLILDWMLPGKSG 58 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R LR PIL+LTA I R+ GL+ GADDYL KPF F ELLA VR LLRR Sbjct: 59 VEFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRR- 117 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + + DL++D +R VTR+G R+ LT KE+ +L + H GE++ R+ +A + Sbjct: 118 VELAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHI 177 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 W + + N IDV +K LR K+D LIQTVRG G+ + P G Sbjct: 178 WHADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRIS-PSG 223 >UniRef50_C8NR68 DNA-binding response regulator n=12 Tax=Bacteria RepID=C8NR68_COREF Length = 224 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 139/225 (61%), Gaps = 11/225 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI ED+ +++ +GL + GF ++A +G + A +GD+DL+ILD+ LP ++G D Sbjct: 5 RILIAEDDDGIADFIRRGLVQEGFECEVAVSGAAAFARAHSGDFDLMILDLGLPHMDGAD 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR +PI++LTA IE R++ LE GADDY+ KPF FAELLARV+ LR + Sbjct: 65 VLEQLRVLKVSLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVK--LRLASR 122 Query: 122 VIIESQ-----FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 +E + L +DL ++KV + L+ +EF LLE +RH G++L R+ + Sbjct: 123 QPVERTTNTHLLKHGTLELDLRTQKVFVADKWRDLSRREFDLLETLMRHPGQILSRAQLL 182 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + VWDM+FD +N +DV ++ LR KI + ++T+RG GY L Sbjct: 183 NMVWDMSFDPGSNVVDVYIRALRKKIGTE----KVETIRGSGYRL 223 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++EDE + +++ +GL G+ VD A NG +G LA +YD+++LD+MLP + G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + R LR+ PI++LTAL E +V+GL++GADDYL KPF F EL+AR+ L RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 120 --AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 A + ++ + D S +V I LT KE LL+ L G VL R I + Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW +N D TN +DV V RLR K+ E + I T+R VGY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQ--EGQRIVTLRNVGYRM 222 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 5/221 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ G+ + GL++ GF VD G G + YD +ILD+ LP ++G Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R R K P+L+LTA + RV+GL LGADDYL KPFA E+ AR+ L+RR A Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S+ + + ++ + T +G + L KEF LLE LR++G VLPR LI +++ Sbjct: 120 SGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + D +NA++V V LR K+ ++F I+TV G+GY L Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKLGSEF----IRTVHGIGYTL 216 >UniRef50_Q1H1R2 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=Q1H1R2_METFK Length = 223 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 140/224 (62%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ E + L++AG+ VDLA+ G + G YD+++LDI LP ++G+ Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R LR N +P+L+++A ++ R+ GL+LGADD+++KPF AEL AR R LLRR Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRR-H 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + LMVDL +++ + +G I L+ +E+ +L + LR+ G+V+ + I + Sbjct: 120 TLSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLC 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D D NA++V + RLR K+D I+TVRG GY+L+ P Sbjct: 180 DWKTDISLNAVEVYISRLRSKLDA--HGIHIRTVRGFGYLLDDP 221 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 7/232 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVED+ + L+ L + + V + +G G L G++D +ILD+MLP V+G + Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R R+ + PI++ +A + HR+ GLELGADDYL KPF+ EL+ARV+ LLRR A Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 VIIESQ-----FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 + +S+ VA L +D ++R+ + G R+ LT +EF LL FF RH G+V R + Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVPDGQ 227 + VW + + ++ + RLR KI+ D EP I TV G GY L P GQ Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAP-GQ 236 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 5/228 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+V+DE+ + + L GF V+ +G DL++LD+ML D++G+ Sbjct: 79 VRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGF 138 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR A G+P L LTA T + +V+GL LG DDY+ KPF+ +EL+ARVR +LRR Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198 Query: 121 AVII----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 + + + + ADL +D +R+V R+G + LT+ E+ LL+F L + VL R+ + Sbjct: 199 SPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLL 258 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW +F + ++ + LR K+DN EP LI TVRGVGY+L +P Sbjct: 259 DHVWGHDFSGEGGVLETYISYLRRKVDN-VEPPLIHTVRGVGYVLRLP 305 >UniRef50_B2V7S5 Two component transcriptional regulator, winged helix family n=2 Tax=Sulfurihydrogenibium RepID=B2V7S5_SULSY Length = 220 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 136/223 (60%), Gaps = 3/223 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+K G + KGL E GF+VDL NG T +Y++I+LD+MLP+ +G Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I+ LR+ P+L+LTA G++E ++KGL GADDYL KPF F EL+AR++ L+RR Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + D+ VDLV++ V G + LT+ E LL +L ++ I ++ Sbjct: 121 NV-SKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D+N I+V + RLR K+D + K I+TV+G+GY+L++ Sbjct: 180 GWEGSPDSNVIEVLISRLRKKLDP--KGKYIKTVKGLGYILKI 220 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 134/224 (59%), Gaps = 2/224 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED + + L +G+ E GF VD+A +G + YD+++LD+MLP V+G + Sbjct: 1 MLLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSL 60 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP-FAFAELLARVRTLLRRGAA 121 ++ R++ +L+LTA +V GL+ GADDYL K EL AR+R L+RRG Sbjct: 61 LKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ 120 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + DL +D +R V R+G I LT +E+ LLEF H+G+V+ RS+I ++D Sbjct: 121 QK-DPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYD 179 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 ++ +N +DV ++ LR K+D +F+P+LI T G GYML D Sbjct: 180 EYDENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLRGED 223 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ + L K LT+ ++VD+A G G+ L + +YDLIILD++LP+++G Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR+ +P+L +TAL ++ GL GADDY+ KPF ELLARVR LLRRG Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + L +++ SR++T +++LT KE +LE FLR+ + R I +W Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYMLE 222 + + +K LR K+ P LI+TV GVGY L+ Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L V+D+ + + L L + + D L + + DL++LDI +P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 IVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + + +R A + +PI+ TA + + G D+ + K + A+LLA + ++R Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 144/224 (64%), Gaps = 6/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIV+DE + + L L ++ + VD A +G +G +Y LIILD+MLP ++G+ Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I+ +R A+ P+L+LTA + R+KGL+ G+DDYLVKPFA +ELLARVR LLRR Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 AVIIESQF-QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + ++ F +VAD++++ VS V + G + LT KE+ + E+ L ++ V+ ++ +A V Sbjct: 134 --LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHV 191 Query: 180 WDMNFD--SDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W FD + +N IDV +K LR KI D +I+T RG+GY++ Sbjct: 192 WGDEFDEFNASNFIDVHIKNLRKKI-GDENHLIIRTKRGIGYII 234 >UniRef50_B5ZHN8 Two component transcriptional regulator, winged helix family n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZHN8_GLUDA Length = 234 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 ++LL+VED+ T Y+ GL G V NG +G A+ +D+I+LD MLP ++G Sbjct: 8 VRLLLVEDDPHTAAYVRDGLARDGIGVTWVANGTDGLSAALGRHWDVIVLDRMLPGLDGM 67 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R +P+L LT + + RV GL GADDYLVKPFA EL ARV LLRR Sbjct: 68 AILKRVREVGIRIPVLFLTTMDGVNSRVGGLRGGADDYLVKPFAVRELAARVAVLLRRMG 127 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + A + +DL++R+VTR G ++ L +E +LE+F+R+ G +L R ++ W Sbjct: 128 LARDATVLRAAGITLDLLTREVTRHGEKLFLQPQEVRILEYFMRNPGTILSRRMLL-HAW 186 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +++F TN ++ + RLR K+ D ++IQT+RG GY++ Sbjct: 187 NVDFPVHTNLVETHLSRLRDKLGPDGR-QVIQTIRGAGYVM 226 >UniRef50_A0AHH4 Complete genome n=7 Tax=Listeria RepID=A0AHH4_LISW6 Length = 220 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 134/222 (60%), Gaps = 6/222 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI ED+ +T LTEAG+ V A NG+ YH +DLII+DIM+P ++G+ Sbjct: 3 KILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKEAFDLIIMDIMMPSMDGYT 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + ++RS + PIL++TAL +KG +LGADDY+ KPF++ LL RV+ LLRR Sbjct: 63 LTELIRSTSSA-PILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRSNQ 121 Query: 122 VIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + ++ V+ + +V +G I LT KEF +L +R+Q +V+ R +I SQVW Sbjct: 122 KEVDKKKLRCGNISVNTETFEVVSAGETIELTKKEFDILVLLIRNQKKVITREMILSQVW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D DT+ I+ +K LR K+ + I+T+RG GY ++ Sbjct: 182 DFAAIVDTSIINTHMKNLRKKLHTE----KIRTIRGAGYKMD 219 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 133/223 (59%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE E L++ L + + VDL +G +G A++ YDLI+LDIMLP ++G Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R P++LLTA G I +V GL+ GADDYL KPFA ELLAR+R + RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 VI++ + D+ ++ + K+++ + LT KE LL F + + LI ++W Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + D + N ++V + LR K+ +I T+RGVGY+LEV Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEV 223 >UniRef50_Q01RB2 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01RB2_SOLUE Length = 242 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVED++K L KG+ E+G LA +G G A ++D+I+LD+MLP ++G Sbjct: 17 MRILIVEDDRKLARQLKKGVDESGHASILAFDGREGLEAAQGNEFDVIVLDVMLPKLDGI 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR G PILLLTAL T + GL+ GADDYL KPF+F ++L L R Sbjct: 77 SVLRQLRQTRIGTPILLLTALDTPDDISTGLDAGADDYLTKPFSF-KVLLARLRALSRRR 135 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ ++ADL +D + V R+G ++L+ EF +LE +R G V+ R+ + VW Sbjct: 136 QADRQTLLRIADLALDPATHDVKRAGAMVSLSKTEFVILEILMRSSGRVITRTRLIDAVW 195 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +N +DV +++LR KI+ KL+ TVRG+GY L Sbjct: 196 GHERDVQSNTLDVFIRQLRTKIEPAGTTKLLHTVRGIGYTL 236 >UniRef50_C7Q501 Two component transcriptional regulator, winged helix family n=2 Tax=Actinomycetales RepID=C7Q501_CATAD Length = 242 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL+V+D+ L + L +GF V+ A +G + G D ++LD+ +P ++G D Sbjct: 9 RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +VR LR +P+L+L+AL + R+ GL GADDY+VKPF+ AEL RVR LLRRG Sbjct: 69 VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRP 128 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 V +++D +R VT +G + LT +EF +LE +R+ G VL R + +VW Sbjct: 129 V-PHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWG 187 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +F ++A+D V LR K++ D P+++ TVRGVG+ L Sbjct: 188 YDFQVRSDAVDTVVSYLRRKLEADDRPRVLHTVRGVGFALR 228 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LI+EDE E L L + G+ D A +G++G LA++ YD+I+LD+MLP + G+ Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR +++L+A +E ++ GL+ GADDYL KPF EL AR+R + RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLT--SKEFTLLEFFLRHQGEVLPRSLIASQ 178 V + + DL +++ + ++ S T TLT SKEF L+E+ +R+ +V+ RS I + Sbjct: 140 EV-VRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEK 198 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +W + + + N +DV + LR K+ + I+ VRG+GY L+ Sbjct: 199 IWGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQ 242 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ E + L AGF+V+ A +G A DLI+LD MLP ++G + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +RS +PI+LLTA+G+ + R+ GLE GADDY+ KPF+ EL+ RV+++LRR Sbjct: 101 VCRRIRSRGD-VPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 122 -VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E+ F + + +D + + R+G + LT++EF LL F L+H G+ R + VW Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 F D + + V V+RLR KI+ D P ++ TV GVGY L Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 131/220 (59%), Gaps = 9/220 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE+ +L LT + VD +G +G A++ YDLIILD+MLP +NG + Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R + PI+++TA +V GL+ GADDY+VKPF ELLAR+R +LRR Sbjct: 63 ICRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--- 118 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + Q + D+ L+ KVT +G I LT E+ LL ++ V+ R I + VW Sbjct: 119 ---QPQKDIIDVNGTLL--KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG 173 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N + +TN +DV ++ LR K+ K+I+TVRGVGY++ Sbjct: 174 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 9/223 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ G+ + GL++ GF VD G G + YD +ILD+ LP ++G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 DI+R R + P+L+LTA + RV+GL LGADDYL KPFA E+ AR+ L+RR Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 G A ++ + ++M+D R T +G +TL KEF LLE +R+ G VL R LI + Sbjct: 121 GQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 ++ + + +NA++V V LR K+ +DF I+TV G+GY L Sbjct: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+VED+ LT L AG+ V AD G A G DLI+LD+ LPD++G+ Sbjct: 14 NVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFA 73 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + R LR+ P+L LTA +E R+ GL G DDY+ KPF E+L R+R +LRR Sbjct: 74 VTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDM 133 Query: 120 --AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + DL +D + +V R+G I L+ EF LL L V+ + I S Sbjct: 134 PPSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILS 193 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +VW +F D +D V+ LR KID FEP+LIQTVRGVGY L Sbjct: 194 EVWHYDFAGDARIVDTYVRNLRRKIDR-FEPQLIQTVRGVGYCL 236 >UniRef50_B5WI25 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WI25_9BURK Length = 240 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ + ++ L + F V+ +G G A+ GD+D ++LD MLPDV+G Sbjct: 16 RILVVEDDDRVRLEVSTALEDYDFAVEGVSSGHAGLLRALNGDFDAVVLDRMLPDVDGLS 75 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LR+ P+L+L+AL ++ RV+GL G DDYL KPF EL AR+ LLRR ++ Sbjct: 76 ILSTLRNVGTETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSS 135 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + V DL++D+ + +V R+G I L +E+ LL++ + H + + R+++ VW+ Sbjct: 136 SEQANVLSVGDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN 195 Query: 182 MNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 +F+ TN ID+ + +LR KI N +I TVR VGY+L Sbjct: 196 YHFNVHTNVIDMHIGQLRRKISLNGRFSLMIHTVRNVGYVL 236 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 127/231 (54%), Gaps = 13/231 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT----------GDYDLIILD 51 +L++EDE E + L E G+ +A +G +L T G+ LIILD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 52 IMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLAR 111 +MLP +NG D+ R++R +PIL+++A G+ RV GLE+GADDYL KPF E+LAR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 112 VRTLLRRG--AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEV 169 R LLRR + + DL + + T G + L+ KE+ LLE F+RH V Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRV 202 Query: 170 LPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGY 219 PR + QVW +F D+ +DV ++ LR KI+ D P+ I TVRG GY Sbjct: 203 WPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGY 253 >UniRef50_Q0ICD5 Two-component response regulator n=5 Tax=Synechococcus RepID=Q0ICD5_SYNS3 Length = 295 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ + +L + T + G L +DL++LD LPD +G + Sbjct: 66 QVLLVDDDPELLSFLYEEFTSDKVTCTCSKTGSKALTLLRQQRFDLVVLDWNLPDFDGLE 125 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 I + LRS+ P+L+LTA ++ RV+ L+ GADDY+ KPF EL ARVR LRRG Sbjct: 126 ICQRLRSSGNTTPVLMLTAHDDLDARVQALDYGADDYISKPFELRELHARVRARLRRGTF 185 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 AA + Q ++ DL ++L+ R V R +++LT +EF LL + + H GEVL R I Sbjct: 186 AAAEKQKEQLELGDLRINLLKRAVHRGEHKLSLTQREFDLLCYLIGHHGEVLHRKNILEG 245 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 VW F D N +DV + LR K++ P+L+ T+RG+G+M Sbjct: 246 VWGAPFVGDPNTLDVYMGYLRRKVEKPDHPQLLHTIRGIGFM 287 >UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=12 Tax=Lactobacillales RepID=Q04HD6_OENOB Length = 231 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 140/222 (63%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L++ED+K + +T L+E V + NG +G + A+ YDLI+ D+MLP++NG Sbjct: 6 VKILLIEDDKILNDDITAMLSEIAEVKQVF-NGADGEYEAVEAPYDLIVSDLMLPEMNGL 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI++ +R A+ P+L+LTA +++ +VKG E+GADDYL KPF ELLARV LLRR Sbjct: 65 DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + + +L + L +R VT + L KE+ +L + +++ ++ + I +VW Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++ D+ T+ +++ + LR K+++ + LI+T+R VG++LE Sbjct: 185 GLDSDTTTSVVNIYLNNLRRKLESVGKNDLIKTLRNVGFILE 226 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE L + L AGF VDLAD+G L T +D ++LD+ LP ++G Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R R+A G+P+L+LTA G +V G E GADDY+ KPF E++ R++ L+RR A Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A ++ L +D S + + G + LT++E+ +L + L QG+ + RS I V+ Sbjct: 120 AGHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D + D D+N IDV V RLR K+ LI TVRG+GY LE Sbjct: 180 DRDSDRDSNVIDVLVGRLRRKLGA----PLIHTVRGLGYRLEA 218 >UniRef50_B0RUJ6 Two-component system regulatory protein n=85 Tax=cellular organisms RepID=B0RUJ6_XANCB Length = 248 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED + E + + L GF VD A +GL+GY LA YD+++LD+MLP ++G ++ Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81 Query: 63 VRMLRS-ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 R LR+ A K P+L+LTA T++ ++ GL GADDYL KPFA EL AR+R L+RR Sbjct: 82 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRERR 141 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + +VADL++D VS + TR+GT + L+ LL +R V+ R I ++W Sbjct: 142 QVGSEVLKVADLVLDPVSMRATRAGTELQLSPIGLRLLTILMRESPRVVTRQEIEREIWG 201 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N D++ + + LR ID F+ L+ TV+ GY + Sbjct: 202 -NGLPDSDTLRSHLYNLRKIIDKPFDRPLLHTVQSAGYRI 240 >UniRef50_B1C8W4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8W4_9FIRM Length = 226 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 1/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE L L + + D +G +G LA YD+I+LDIMLP+++G+ Sbjct: 1 MRVLIIEDEVNLALPLVALLEKNKILADTVADGTSGLMLARKPVYDVIVLDIMLPEIDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + PILLLTAL I+ RVKGL LGADDYL KPF EL+AR++ L RRG+ Sbjct: 61 TILKTLREEHNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 I E + ++ +++ + ++ TLT KE LLE ++++ VL + I +VW Sbjct: 121 GSITEEVLHIGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 ++ + N++++ + LR K+ +D + K++ T RG+GY L+ D Sbjct: 181 GIDSYAIDNSVEIYIHYLRKKLGSDADVKIV-TNRGLGYTLKEKDN 225 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 134/219 (61%), Gaps = 2/219 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ L LT G+ V +A++G G LA G DLII+D+MLP +NG+++ Sbjct: 19 VLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFEL 78 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 +R+LR+ + +P+++L+A G +V GLELGA+DY+ KPF+ AELLARV+ +LRR A Sbjct: 79 LRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAIA 138 Query: 123 IIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + +Q + D++++ +R+V R I LT+ EF +L G VL R I ++VW Sbjct: 139 RADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVWG 198 Query: 182 MNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGY 219 ID + +LR K+ +N P+ + TVRGVGY Sbjct: 199 PTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGY 237 >UniRef50_A6W2Y0 Two component transcriptional regulator, winged helix family n=2 Tax=Oceanospirillales RepID=A6W2Y0_MARMS Length = 223 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 138/227 (60%), Gaps = 5/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ GE +++ ++ G +DLA GL + +YDL++LD+ LPD+ G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + P+++LTA I+ R++ L+LGADDY+ KP F EL AR R LLRR Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + ++ ++L + VT G I L +EF LLE F+ H G VL + + ++ Sbjct: 121 GQ-AQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDG 226 + N + +++ I++ V RLR + D+D I+T+RG+GY+LE G Sbjct: 180 NFNENPNSSVIEIYVARLRKSLQDSDIN---IRTIRGLGYLLEKHHG 223 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 133/226 (58%), Gaps = 9/226 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ + L LT+AG VD+ +G +G A+T YDLI+LDIMLP +G+D Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R LR PIL++TA +V GLELGADDY+ KPF+ E+LARV+ L RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRR-VE 126 Query: 122 VIIESQFQVADLMVDL-------VSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 V E+Q Q D ++L RKVT G + LTSKEF LL F RH G R Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGY 219 + +VW + ++ ++ + RLR KI+ D EP+ ++TV GVGY Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGY 232 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 11/228 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + + LT+ +VVD+A +G G+ L +YDLI+LD++LP ++G Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR M ILLLTA T +V GL+ GADDY+VKPF F EL AR+R LLRRG Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + L++D + +VT + + LT+KEF+LL+ FLR+ + R+ I Q+W Sbjct: 121 TA-LPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLW 179 Query: 181 DMNFD-SDTNAIDVAVKRLRGKI-----DNDFEPKLIQTVRGVGYMLE 222 D + N I +K LR K+ + DF I+TV G+GY L+ Sbjct: 180 SAEKDPPEENTIKSHIKSLRQKLKTAGANYDF----IETVYGMGYRLK 223 Score = 39.3 bits (90), Expect = 0.093, Method: Compositional matrix adjust. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++++VED+ + + + L G + ++ + DL+ILD +P +NG + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + +++R+ K +P++ + + + + +GADD + KP + L+A + + R Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSADIVEQIFAIGADDCVSKPIVSSTLIACILNRMERN 618 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+V+DE + + L GF V+ ADNG +A T D ILD+M+P ++G+ Sbjct: 30 VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR A P L LTA +E R+ GL +GADDY+ KPF+ E++ R+R +LRR A Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 121 AVIIE--SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 E S D+ +D +VT++G + L+ EF LL + + + VL +S I Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW+ +F D N ++ V LR KID EP+LI TVRGVGY+L P Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDTK-EPRLIHTVRGVGYVLRKP 254 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL+VED++ E + + L ++V+LA +G G LA +YDLI+LD+MLP ++G Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R PILL+T +VK L+ GADDYLVKPF ELLARVR LLRRG Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRG- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + Q L ++ S +VT G I LT+KE+ +LE FLR++ + +S + +W Sbjct: 120 GLSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYML 221 + NA+ +K LR K+ P LI+TV G+GY L Sbjct: 180 SFDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + + L GF + L ++ + + DL+ILD+ +P+++G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 IVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +++R+ +PIL L+ + +G + GADDY+ KP +EL+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ GE + L G+ VD +G + H ++L+ILD+ LP ++G Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ LR+A +P+L+LTA R+ GL+ GADDYLVKPF AEL AR+R LLRR Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + +++D V+++V+ GT I L KEF LL L G VL R + ++ Sbjct: 136 NR-PEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLY 194 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + D ++NA++V + LR K F P+LI+TVRGVGY+++ Sbjct: 195 GWDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 232 >UniRef50_B1X008 Two-component response regulator n=2 Tax=Cyanothece RepID=B1X008_CYAA5 Length = 609 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED++ T EYL L F+VD+ NG G A DYD+IILD+ LP ++G Sbjct: 1 MKILLIEDDQLTSEYLAAVLESHHFIVDVVFNGQEGLEYANLWDYDVIILDLQLPKIDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR K PIL+LTA + GL+ GADDY++KP +L+AR+R L RRG Sbjct: 61 SLCRQLRMKKKQTPILILTACQETDKISIGLDAGADDYVLKPCDPPQLIARIRALTRRGY 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S L ++LVS +VT + L ++E+ LLE FLRH + RSLI +W Sbjct: 121 NISSSSVLTWGLLSLNLVSAQVTYQKQEVNLRNQEYHLLELFLRHPQRIFSRSLIIDHLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 ++ +A+ VK LR K+ E + +T+ G+GY L Sbjct: 181 EVGDVPSESAVTNLVKDLRNKLKAAGMEEDIFETIYGLGYRL 222 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 2/75 (2%) Query: 46 DLIILDIMLPDVNGWDIVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPF 103 DL+ILD+ +P +NG ++ R++R + +PI+++TA ++ + E GA+D+L KP Sbjct: 535 DLLILDLEMPTINGIELCRVVRQDKQYAKLPIIIVTAHTETKYLQQSFEAGANDFLGKPI 594 Query: 104 AFAELLARVRTLLRR 118 +EL+ARV +++ Sbjct: 595 IPSELVARVFNQIKK 609 >UniRef50_C7RF78 Two component transcriptional regulator, winged helix family n=3 Tax=Anaerococcus RepID=C7RF78_ANAPD Length = 223 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVEDE+K L +GL+ G+V D+A +G LA DYD+IILDI LP +G+ Sbjct: 1 MKVLIVEDERKLLRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLPKKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R +R +K + I++LTA I+ RVKGL+ GA+DY+ KPF EL AR+R+LLRR Sbjct: 61 EVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSLLRR-K 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ E + + D V R+V G+ +TLT+KE ++E+ ++ + + + VW Sbjct: 120 SIMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELMNHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D N D +N + V + LR KI I+ V G GY + Sbjct: 180 DSNADDFSNTVRVHMSSLRKKIKKATGKNYIENVIGKGYKI 220 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ E L+ AGF V A +GL G +A DLIILD+MLP ++G+ + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR---RG 119 R + + +PI+LLTAL HR+ GLELGA DY+VKPF+ ELLARVR +LR R Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + V + +D SR+V I L+ KEF LL + + G L R L+ +V Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVP 224 W +F IDV V+ LR K++ D P LI+TVRG+GY + P Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDP 228 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFV-VDLADNGLNGYHLAMTGDYDLIILDIMLPDVNG 59 M++L+ ED+ GE + L + G VD G + Y A+ YD+IILD MLP+ +G Sbjct: 4 MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 I + LR IL+LTA ++ RV+GLE GADDYLVKPF EL+AR++ L RR Sbjct: 64 VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 A I E + V+ S + + G +I LT +EF LL+ L+++G VL R +I ++ Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W + D ID VK LR KI D + +LI+TVRGVGY +E Sbjct: 184 WGYDADVSMKTIDATVKLLRKKI-GDEQQQLIKTVRGVGYTIE 225 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D+ LT L ++VD +G G+ A T DYDL++LD MLP ++G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR G+PILLLT ++++GLE GADDY+VKPF ELLAR+R LLRR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E +L +D +S +V SG +TLT+KE++LLE FLR +V +++ ++W Sbjct: 121 HE-TEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLE 222 + ++RLR K+ P LI+TV G+GY L+ Sbjct: 180 SSQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + + + L F + N + L DL++ D+ +P +NG++ Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 IVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPF---AFA 106 + R+LRS K +PI+ L+ G + + +GADDY+ KP AFA Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFA 619 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ + + + L AG+ VD + +G +G+ + +G YD ILD+ LP ++G Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R R A + MP+L+LTA + +V GL GADDYL KPF ELLAR+ L+RR A Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ VA L +D +++++R G + LT+ E+ L + + H +V+ ++ + ++ Sbjct: 120 SGHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + D D+N I+V V RLR KI D I+T RG GY L Sbjct: 180 GQDDDRDSNVIEVLVNRLRKKIGADA----IRTRRGQGYQL 216 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 122/224 (54%), Gaps = 1/224 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED++ + L K L G+ V LA +G L LIILD+MLP ++G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LRS N PI++LTA G +V GL LGADDYL KPF ELLAR+ +LRR Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 V DL +D V ++ ++ L+S+EF +LE R G+ + R I +VW Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 183 NFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPD 225 + ID + RLR K+ DN EP+ I TV G GY VP+ Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 139/226 (61%), Gaps = 11/226 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ GE + GL + G+ +D +G++G H +DL+ILD+ LP ++G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 +++R LR+ +P+L+LTA ++ R+ GL+ GADDYLVKPF EL AR+R LLRR Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 120 --AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 A V+IE A + +D +++V +G + LT KE+ LL L G+V R + Sbjct: 121 GRAKVLIEH----AGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQ 176 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++ + + ++N ++V + LR K+ N LI+TVRG+GY++EV Sbjct: 177 LLYGWDEEPESNTLEVNIYHLRKKLFN----GLIRTVRGIGYLVEV 218 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED + LT GL G+ VD +G + + + YDLIILD+ LP + G Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ R+A P+L+LTA G+ R++GL+ GADDYL KPF EL R++ LLRR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + + A L +D + V+R G I LT+ EF LL +F+ H ++L +S +A ++ Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 D + D+N ++V V LR K+ +I+T RG GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGR----SVIETRRGQGYI 216 >UniRef50_D2PKG5 Two component transcriptional regulator, winged helix family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PKG5_9ACTO Length = 226 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 5 IVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVR 64 +VEDE+ L GL AG+ VD A G T YDL ILDI LPD NG D+ R Sbjct: 1 MVEDEEGLVSALRSGLGRAGYAVDTALTGAEAVEKLATTAYDLAILDITLPDTNGLDLCR 60 Query: 65 MLR------SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 +R ++ + + +L+LTA ++ RV+GL+ GADDYL KPFA ELLAR+R LLRR Sbjct: 61 AVRRGEIEVASGRELRVLMLTARASLADRVRGLDEGADDYLTKPFALVELLARIRALLRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +Q V +L++D TR G ++LT KEF +L + + G V+ + Sbjct: 121 DVTNGT-TQLHVGELVLDSSRHLATRGGRELSLTLKEFGVLRYLMSRPGHVVSAEELLEH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VWD N D T ++ V V LR K+ + E L++TV G GY L Sbjct: 180 VWDENADPFTQSVRVTVGTLRRKLTQEGEEPLLETVIGRGYRL 222 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 10/230 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL+VEDE ++KGL ++G+ VD A +G L +YDLIILD+ LP ++G Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 +++ +R N+ + IL+L+A I ++ GL+ GA+DYL+KPF F EL AR+R LLRR Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 120 ---AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 +A+I ++ +D + V G I +T KE+ +LE+ + HQ +V+ + Sbjct: 121 SQKSAII-----SFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELI 175 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPD 225 VWD D +N++ + LR KI + E ++IQT+RG GY++ D Sbjct: 176 EHVWDSETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEND 225 >UniRef50_P0A4H9 Transcriptional regulatory protein dltR n=9 Tax=Streptococcus RepID=DLTR_STRA3 Length = 224 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 140/225 (62%), Gaps = 7/225 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VEDEK E + L + G+ VDLA +G +G +TG YDL++LDIMLP +G Sbjct: 1 MRLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R A PI+ LTA +V GL+LGADDY+ KPF ELLAR+R L R + Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIR-LRTRQS 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++I +Q ++ ++ ++ S ++ + + L++KEF L+E F+R+ +++P++ + S+VW Sbjct: 120 SLIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGK---IDNDFEPKLIQTVRGVGYMLE 222 + +S+ N ++V + LR K + D E I T +G GY LE Sbjct: 180 GPSDNSEYNQLEVFISFLRKKLRFLKADIE---IITTKGFGYSLE 221 >UniRef50_A5FGB3 Two component transcriptional regulator, winged helix family n=2 Tax=Flavobacteriaceae RepID=A5FGB3_FLAJ1 Length = 226 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ + ++ T F +G +YDLIILDI +P +NG Sbjct: 1 MKILLLEDDFTLSKEISAFFTTKQFECTPYYDGSLLLKKYFPYEYDLIILDINVPGINGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + +R +K PI++LTA IE ++ + GADDYLVKPF F EL AR+ +LLRR Sbjct: 61 EVCKGIREIDKKTPIIMLTAFSEIEDKLASFDSGADDYLVKPFHFEELYARISSLLRRKE 120 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 E + + DL + KV RSG I LT KEF L+ +G+VL + IA ++ Sbjct: 121 IPQQTEKKIIIEDLEILEDEMKVLRSGEEIKLTPKEFKLILILAHAKGKVLSKQFIAEKL 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 WD + +++ N I+V + LR KID D E KLI+T G GY L Sbjct: 181 WDYHIETNQNTIEVYINFLRKKIDKDHETKLIKTKIGYGYYL 222 >UniRef50_C8WY20 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WY20_ALIAD Length = 224 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 138/224 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ + L + L E F VD+A +G G +LA T YD +++D+MLP ++G+ Sbjct: 1 MRILLVEDDRGLSDALAELLREESFQVDVAHDGEEGLYLAETAVYDALVVDVMLPGLSGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+VR LR +P+L LTALG ++HRV+GL G DDYL KPFA E LAR+R LLRR Sbjct: 61 DLVRTLRDKRVHVPVLFLTALGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + L++D ++R+ I L+ KEF LLE+ L H+G++L R I ++VW Sbjct: 121 ELGTDMTLRSGLLVLDPLARRAAFGNEPIKLSDKEFDLLEYLLSHRGQILMRERIFNRVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 ++ D +D+ V LR K+ I+TVR VGYM P Sbjct: 181 GIDSDVMDTTVDLYVHYLRKKLQPFGYDTAIRTVRNVGYMWSDP 224 >UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z755_DEHE1 Length = 225 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 141/222 (63%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ + +T GL E G+ V+ NG G +A+ +D+IILDIMLP+++G+ Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +RS PI++LTA +V GL GADDYLVKPF+F ELLAR+R LLRR Sbjct: 63 AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S ++ L ++ V R+ G I LT+KE+ +LE+ + ++ ++ +++I +W Sbjct: 123 NQHSPS-IKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + D +N I+V + R+R K+DN+ + LI+TV+G+GY++E Sbjct: 182 ESESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGYIIE 223 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 13/238 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE L+ L +AG+ V A +G + L + + I+LD+MLP ++G + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR PI+++TA +V GLELGADDY+ KPF+ E+LAR++ ++RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 -----------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + V DL +D +V R+G I+LT KEF LL +F+ +G VL Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVPDGQ 227 R I + VW ++ S+T +D+ + LR KI+ D +P+LI+TVRG GY V DG Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF-VGDGH 241 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL++EDE L+ LT G+ V + D+G GY A+ D+DLI+LD+MLP +NG++ Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 I+ LRS P+++LTA E V+GL+ GADDY+ KPF AELLARV +LRR Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 121 -------AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 A SQ + L + +VT +G ITL KEF +L + R G V+ R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + + VW ++ +DV V LR K++ D + I ++RGVGY L V Q Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKKQ 237 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L AG+ V +G + + DLI+LD+MLP ++G Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR + +PI++LTAL + ++ GL+ GADDY+ KPF+ EL++R++ + RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 122 VIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + +++ F + L V R+V G I LT KEF LL F +H+G+VL R + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLEVPD 225 VWD +F DT +DV + LR KI+ N P+ I TVR VGY L P+ Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 128/227 (56%), Gaps = 3/227 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLLIVE+++ T LT L F VD A + + LA +YDLI+LD+MLPD NG Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR+ N+ PILLLT R+ G E GADDY+ KP+ +ELLAR+R LLRRG+ Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V+ + L +D + +V G + LT KE+ LLE FLRH + R + ++ Sbjct: 121 TVLTKV-LCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRIC 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLE-VPD 225 ++ AI ++ LR K+ I+T+ G+GY L+ VP+ Sbjct: 180 SIDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLKSVPE 226 Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 4/114 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGF-VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +LLIV+D+ L L GF V LAD+ +L T DL++LD+ +P +G Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTP-DLLLLDVAMPGFSGI 665 Query: 61 DIVRMLRSANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 ++ ++++S + +P+LLL+A + + L GADDY++KP A+L+ R+ Sbjct: 666 ELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 46 DLIILDIMLPDV--NGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPF 103 D IILD+ P+ +G ++ L+ +P+L+LT LG + RV+ LGA+ +L KP Sbjct: 526 DAIILDLTFPNTTESGLTLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPA 585 Query: 104 AFAELLARVRTLLRR 118 E+ V LL R Sbjct: 586 TPTEVFQAVSQLLHR 600 >UniRef50_Q1J2V2 Two component transcriptional regulator, winged helix family n=2 Tax=Deinococci RepID=Q1J2V2_DEIGD Length = 223 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/223 (46%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV--N 58 M+LLIVED+ E L GL E G+ VD A + G+ LA +DL+ILD+MLP+ Sbjct: 1 MRLLIVEDDPHIAELLRDGLREDGYAVDHAASAEEGFALAGLFPHDLLILDVMLPEGIDA 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G+ + + LR PIL LTA GT+E RV GLE G DDYL+KPFAF EL ARVR LLRR Sbjct: 61 GYRLGQRLREVGNLAPILYLTARGTVEDRVTGLEAGGDDYLIKPFAFRELRARVRALLRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + M+DL +++V RSGTR LT KE+ LLE H G R I + Sbjct: 121 AGGYAHNTLPLSGGFMLDLTAKEVYRSGTRCDLTRKEYALLELLAHHPGRTFTRDEIIER 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +WD + IDV V +R K E LI TVRGVGY L Sbjct: 181 LWDGEEGVEPKVIDVYVSSIRRKT----EEGLIGTVRGVGYRL 219 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ G L K + + VDL +G +G DY ++ILD+ LP +G+ Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++VR LR++ +P+LLLTAL +I RV+GL+ GADDYLVKPF ELLARVR L RR Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E+ + ++ +D + ++GT + + KEF LL+ + G + +S I ++ Sbjct: 121 GR-TETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D++ ++N I+V + LR K+ DF I+++RGVGYM+E Sbjct: 180 DISAMVESNTIEVTIYSLRKKLGADF----IKSIRGVGYMVE 217 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE +T L +A + V DNGL+ + G D +I+D+MLP ++G + Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + +R ++ +PI++LTA + ++ GLELGADDY+ KPF+ ELL+R++ +LRR Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 123 I----IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 I I+ Q ++ +D V ++ +I LT EF LL + ++ +VL R I + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGY 219 VW + T +D+ + LR K++ND + P+LI+T+RG GY Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGY 226 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++EDE ++ L+ F + +A +G G LA+ ++D+I+LD+MLP ++G Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +RS K PI++LTA +I RV GL+ GADDY+ KPFA ELLAR+R + RR Sbjct: 89 VCQKIRSVKK-TPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 V--IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + L+V + R VT++ + LT +E+ LL F+++ VLPR ++ V Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W +TN +DV V+ LR KID E I TVRG+GY++ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVM 249 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 133/230 (57%), Gaps = 12/230 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+D+K + L GF VD+A +G GY +Y+ +ILDIMLP+++GW+ Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 62 IVRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + +R++ N +PI++LTA + ++ GL+LGADDY++KPF+ EL+ARVR L+RR Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 120 AAVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + + DL VD S KV + L KEF LL +++ V R I + Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPK-----LIQTVRGVGYMLEV 223 +W +F T +D VKR+R K+ EP+ LIQTV GVGY EV Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKL----EPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_D0MIF5 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIF5_RHOM4 Length = 231 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 99/221 (44%), Positives = 127/221 (57%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VED+++ L +GL E G+ VD +G+ YD +I+D LP ++G Sbjct: 1 MWILLVEDDERLARALARGLREEGYQVDRVADGVEAEARVQASHYDALIVDWRLPRMDGQ 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VR LR A MPIL+LTAL +EHRV GL+ GADDYL KPFAF ELLAR+R LLRR Sbjct: 61 TLVRRLREAGYQMPILMLTALDDLEHRVAGLDAGADDYLGKPFAFEELLARLRALLRRSP 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ L ++ R+V + L KE+ LL F RH GEVL R+ IA QVW Sbjct: 121 VWQATDVIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 F N IDV V LR K+ I+TVRGVGY L Sbjct: 181 GDPFYVSDNTIDVTVSGLRQKLSEATPALQIETVRGVGYAL 221 >UniRef50_B1YFQ0 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFQ0_EXIS2 Length = 225 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI ED+K+ + L L AG+ VD+A +GL T YDL++LD M+P +G Sbjct: 1 MRILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHKSGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR IL+LTA T V GL+ GADDYLVKPF ELLAR+R L RR Sbjct: 61 EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S +L +D+ ++ ++ +G + LT +EF L LR +V+ R LI VW Sbjct: 121 KAFV-STVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + D NA+D V+ +R K+D P LIQTVRG GY L P Sbjct: 180 GIGADITDNALDALVRLVRKKLDAAGAPALIQTVRGFGYRLGGP 223 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDY--DLIILDIMLPDVNGW 60 +++VED+ + L A F V G +A GD L+++D+MLPD++G+ Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVA-GGDAPPSLVVMDVMLPDLDGF 85 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ L++ +P+L L+A G ++ R++GL GADDYL KPF+ EL+AR+R +LRR Sbjct: 86 EVCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRG 145 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S L +D +R+VT G I L+ E+ LL F LR+ G + R+ I VW Sbjct: 146 VLTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVW 205 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D FD ++ ++ + LR K+D P LI TVRGVGY L Sbjct: 206 DYGFDGESTVVETFISSLRKKVDT-APPTLIHTVRGVGYRLS 246 >UniRef50_B9CM45 DNA-binding response regulator n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM45_9ACTN Length = 257 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+VEDE++ + +GL G+ VDL DNG +A YDLI+LD+ LP V+G Sbjct: 29 LKILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGL 88 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R LR + +L+L+A ++ R+ GL+ GADDYLVKPFAF EL AR+R LLRR Sbjct: 89 DLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRR-E 147 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E+ +L +D SR+V + + LT KE +LE+ +R G V+ + S W Sbjct: 148 YTHGETSLVSGELRLDTASRQVFAKDSEVNLTKKETAILEYLMRRAGTVVSSEELLSHAW 207 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D N D +N++ V + +R K+ I G GY L+ Sbjct: 208 DSNVDPFSNSVRVHIFSVRKKLREVLGYDPISNKVGEGYYLK 249 >UniRef50_A3Y7S2 DNA-binding response regulator ColR, putative n=1 Tax=Marinomonas sp. MED121 RepID=A3Y7S2_9GAMM Length = 237 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 2/219 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVED + + L E D A NG+ LA +D+II DI++P ++G I Sbjct: 12 VLIVEDNTALAANIIESLKEFNIECDYAKNGIQALSLAQLYQFDVIISDILMPAMDGITI 71 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR+ + PILLLTALG IE +V G +GADDYLVKPF EL+AR+R+L + Sbjct: 72 CRKLRALDVTTPILLLTALGHIEDKVTGFSVGADDYLVKPFEMLELVARIRSLSEKQR-- 129 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 I S+ V DL VDL + V+R+G I L+ + LL F +R ++ + I +W Sbjct: 130 INPSRLVVEDLQVDLKTHTVSRAGKPIFLSPTCWELLVFLMRKSPSLVSKEQIEQHLWRH 189 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N +T+ V + RLR ID F+ L+ T+RG G +L Sbjct: 190 NGTPETDVTKVHLYRLRQAIDKSFDCPLLHTIRGQGVVL 228 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 7/228 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI ED ++L GL GF +A++G +LA + +DL+ILD+ LP +G Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 ++R +R + +PI++LTA ++ V+ LE GA+DY+ KPF F ELLAR++ LR Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 GA E+ QV +L +DL++R+ + L++KEF L E LRH +V+ + + ++ Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 VW ++D +N I+V ++ LR K F + I+TVRG+GY L G Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRLNSSGG 226 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDEK + + L + V +G + +DL+ILD+MLP V G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R N +PI++LTA G +E R+ GLELGADDYLVKPF+ EL+ARVR LLRR A Sbjct: 70 VCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 VIIESQFQV---ADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 E Q +V +L +D+ KV G + LT+ EF LL R+ G V R + + Sbjct: 129 -DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEK 187 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDGQ 227 V +F+ ID VK LR KI DN PK + TV GVGY E P Q Sbjct: 188 VLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQ 237 >UniRef50_C6QB49 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QB49_9RHIZ Length = 229 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L++ED+ + + L GL AGF V+ ADNG +GY + + Y ILD+ LP + G Sbjct: 13 IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+++ R++++ +P+L+L+A GT +V GL GADDY+ KPF E+ AR++ L+RR A Sbjct: 73 DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRR-A 131 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + I + +D S +V ++G I LT++E +L +F+ G ++ ++ + ++ Sbjct: 132 SGIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLY 191 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + ++N I+V + RLR K+ D +I TVRG+GY ++ Sbjct: 192 ALEDSRESNTIEVYISRLRRKLGAD----VITTVRGLGYRMD 229 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 10/232 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+ED+++ + L + L VVD+A +G+ G+ A G+YDLI+LD+MLP ++G Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR++N IL+LTA T +++ GL+ GADDYLVKPF EL AR+R L RR Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + DL +D + VT ++LT KE+ +LE FL++ +VL RS I ++W Sbjct: 121 ET-RQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKI-----DNDFEPKLIQTVRGVGYMLEVPDGQ 227 + + S + + LR K+ DF I+TV G+GY L +GQ Sbjct: 180 EFDKLSGEETVKTHITNLRKKLRAVGSSEDF----IETVYGIGYRLCPKEGQ 227 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 133/228 (58%), Gaps = 7/228 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI ED+ + L++ L G+ VD +GL +DL+ILD+ LP V G Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R LR+ N +P+L+LTA ++E RVKGL+LGADDY+ KPFA +EL ARVR L RRGA Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + L+ D R T + L+++E +LLE L G ++ ++ + + Sbjct: 121 GG-GSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLC 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQ--TVRGVGYMLEVPDG 226 + + TNAI+V V RLR K+ EP ++ TVRG+GY LE G Sbjct: 180 EWGEEVSTNAIEVYVHRLRKKL----EPSGVKIITVRGLGYCLERDQG 223 >UniRef50_Q2RZP1 PhoP3 response regulator n=2 Tax=Rhodothermaceae RepID=Q2RZP1_SALRD Length = 246 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA--MTGDYDLIILDIMLPDVNG 59 LL+VED+ + L L G+ V LA+ G A + G YDLI+LD LPD++G Sbjct: 10 SLLVVEDDSELSTSLLLYLESEGYEVTLAETGETALEEATRLPG-YDLIVLDAKLPDLSG 68 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 ++++R R P+L+LT LG EH+++G ++GADDYL KPF EL+AR+ LLRR Sbjct: 69 FEVLRQSRDDGVRTPVLMLTGLGDHEHKMRGFQVGADDYLTKPFETEELVARIDVLLRRE 128 Query: 120 AAVIIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 A E+ F+V L VDL V+R G + LT E+ LL + LR +G R I Sbjct: 129 AEATDETGTFRVGGLRVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRD 188 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYMLE 222 VWD+ + +T ID V LR +D + E + IQ+V G+GY LE Sbjct: 189 VWDLPTEVETRTIDRHVNALRDVMDGEAEDEWPIQSVYGIGYKLE 233 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 131/219 (59%), Gaps = 1/219 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVED+ + + L L E G+ D+ +G +G A GDYD+IILD+MLP ++G+ Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V LR + +P+LLLTA + ++ GL+ GADDY+ KPFA AELLA +R L RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V+ E + DL+++L S + I L+ KEF+L + + + G+V+ + ++ ++VW Sbjct: 121 EVLFE-KLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 + ++ N ++ V LR K+ I+T+R GY Sbjct: 180 GVESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGY 218 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+ ED+ GE L + L + G +V+L +G +G YD+++LDI +P G Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 +++R +R+ +PI+LLTA +E R+KGL+LGADDYL KPF EL+AR++ + RR Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 119 -GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + + + D + S VT+ G I ++ KE LL +++ G V+P++ + Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +V+ + + DTN ++V + LR KI+ P IQT+RGVGY ++ Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINI---PNFIQTIRGVGYFVQ 222 >UniRef50_D0XW93 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XW93_9CAUL Length = 231 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+ L++ED + GE T+ L +AGF VDL D +G+H + YD++ILDIML NG Sbjct: 1 MRALLIEDNVRLGEATTRSLVKAGFTVDLFDTLEDGWHAWRSVTYDVVILDIMLGRENGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++ R+A +L+LTALG+++ RV+GLE GADDYLVKPFA EL+AR+R L RR Sbjct: 61 DLLAQARAAGLRTQVLMLTALGSVDQRVQGLERGADDYLVKPFAIEELVARLRALGRR-- 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + D+ D +R++ R+ L+ E +LE FLRH V+ ++ + + Sbjct: 119 PDLTADVLRYGDIEYDQGAREICVGEARLPLSRGESIVLERFLRHPDRVVTKAQLGDSLH 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 ++ D N+I V V R+R K+ I+ +RG+GYM Sbjct: 179 SLDQDYTDNSIQVHVHRVRRKMAELGADVTIRALRGLGYM 218 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED E + + L + F VD A NG +G LA+ YD I+LD+M+P ++G+ Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ +R P+L LTA ++E RVKGL+ G DDY+VKPF EL AR+R LLRR Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + + + + V G + L+ K++ LLE+ +++ G++L R I +VW Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 181 DMNFDSDTNA--IDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 FDSDT ++V V LR K++ K IQTVRG+GY+L+ Sbjct: 189 --GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILK 230 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 123/227 (54%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ + L L ++VD +G G+ A YDLI++D+ LP +G Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR+ +PILL+TA R+ GL+ GADDYL KP AEL ARVR LLRRG+ Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 QV +L +D S +VT + + LT KE+ LLE FLRH G+V R + +W Sbjct: 121 ETKTPI-LQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + ++ VK LR K+ I+ + G+GY L PD + Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPDSE 226 Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 + +L+V+D+ E + L G + +N L + + + DL+ILD+ +P +G Sbjct: 380 VNVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGI 439 Query: 61 DIVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 ++ + LRS + +PI+ LTA E + +GADD++ KP ELL R+ L R Sbjct: 440 ELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499 >UniRef50_P0A5Z7 Transcriptional regulatory protein prrA n=41 Tax=Actinomycetales RepID=PRRA_MYCBO Length = 233 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 2/208 (0%) Query: 16 LTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPI 75 L +GL +GF V A +G A D I+LDI +P ++G +V LR+ + +P+ Sbjct: 23 LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQ--FQVADL 133 +L+A +++ RV GLE GADDYLVKPF AEL+ARV+ LLRR + S V L Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142 Query: 134 MVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDV 193 VD+ R+ +G + LT +EF LL H+ VL R+ + VW +F +DTN +DV Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202 Query: 194 AVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + LR K++ P+L+ TVRGVG++L Sbjct: 203 FIGYLRRKLEAGGGPRLLHTVRGVGFVL 230 >UniRef50_C8W041 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W041_DESAS Length = 384 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+D++ +Y++ GL G+ V A G + L D +ILD MLPD+ G D+ Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR + I+++T RV GL GADDY+VKPF FAELLAR+ LRR + Sbjct: 226 CRRLRELINPV-IIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTSS 284 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + AD+ + R+ R + LT EF LL F+RH +VLP+ +I Q+W Sbjct: 285 PEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWGH 344 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 NF D N ++V + LR K+ +P LI TVRGVGY+ E Sbjct: 345 NFTGDLNIVEVYIGYLRRKLQ---KPSLIHTVRGVGYLFE 381 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 133/233 (57%), Gaps = 16/233 (6%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNG---LNGYHLAMTGDYDLIILDIMLPDVN 58 K+LIV+DE + L L+ G+ V A +G LN +H M D++ILDIM+P ++ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMP---DVVILDIMMPKLD 72 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G+ + + +R + +PI++LTALG + R+ GLELGADDY+VKPF+ EL AR+R +LRR Sbjct: 73 GYGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131 Query: 119 GAAVIIESQFQVAD------LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 S + L +DL R++ + RI LT EF+LLE + G+ R Sbjct: 132 TNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSR 191 Query: 173 SLIASQVWDMNFDS--DTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLE 222 + I +VW + DT +DV + RLR K++ D P LI T RG GY+ + Sbjct: 192 ADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+ ++ L + VD+ +G G A++ YDLI+LD+MLP++NG + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R N+ PI+++TA +V GL+ GADDY+VKPF ELLAR+R +LRR Sbjct: 63 ICRQIRQ-NQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQPQ 121 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 ++ + +++D + KVT G + LT E+ LL + ++ VL R I + VW Sbjct: 122 ---KNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG 178 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + +TN +DV ++ LR K+ + K I+TVRGVGY++ Sbjct: 179 YDTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVV 218 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+ L G+ V A++G G LA+ LI+LD+MLP VNG++I Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR MPI++LTA G V GL+LGADDY+ KPF+ ELLARV LRR Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + + D D +R + R+G + L+ KEF LL F + + G L R I S VW Sbjct: 127 -TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGY 185 Query: 183 NFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVP 224 + +ID V LR KI+ D EP++++TVR GY E+P Sbjct: 186 DSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFELP 228 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+VED+ E + L F VD+A +G G +A+T Y+LIILD+MLP ++GW+I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 R LR +A + PI++LTA +V GL++GADDYL KPF E LARV LLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 V-IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L + S + + LT KEF LL R+ G L R + QVW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP--KLIQTVRGVGYMLEVPDG 226 + T ID +KRLR KI + EP +QTV GVGY LEV + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKI-SQLEPGYTFVQTVWGVGYKLEVKEN 235 >UniRef50_P0A4I1 Transcriptional regulatory protein cutR n=91 Tax=Actinobacteria (class) RepID=CUTR_STRCO Length = 217 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 128/223 (57%), Gaps = 8/223 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE+ + + GL VD+ +G DYD+++LD LP V+G Sbjct: 1 MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60 Query: 61 DIVRMLRSANKGMP--ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 D+ R + GMP +L+LTA G + RV+GLE+GADDYL KPFAF+EL+ARVR L RR Sbjct: 61 DVCRKI--VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +V + + A + +D R+V R G + L KEF +LE +R +G V+ + + Sbjct: 119 -TSVPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEK 177 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 WD N D TN + V V LR K+ EP +I TV G GY + Sbjct: 178 AWDENTDPFTNVVRVTVMTLRRKLG---EPPVIVTVPGSGYRI 217 >UniRef50_C0Z6C7 Two-component response regulator n=3 Tax=Bacillales RepID=C0Z6C7_BREBN Length = 230 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 136/219 (62%), Gaps = 3/219 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+V+DE ++L GL GF V A +G+N + ++ILD+M+P ++G+ Sbjct: 10 IKILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGF 69 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ RML+ + + ++LTA +E RVKGL LGADDY++KPF+F ELLAR+ +R Sbjct: 70 EVCRMLKKI-QNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHY 128 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ S+ + +D +++T GT + L+ E++LL++ + + G VL + +I VW Sbjct: 129 PHLL-SKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVW 187 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +F + N ++V ++ LR K+ ND + ++I+T+RG GY Sbjct: 188 GYDFGGEENIVEVYIRSLRDKL-NDRQHRIIRTLRGAGY 225 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED + L L G+ VD +G + + T YDLI+LD+ LP + G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ R P+L+LTA G+ R++GL+ GADDYL KPF EL R++ LLRR Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + A L +D + V+R G I LTS EF LL +F+ H G++L +S ++ ++ Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 D + D+N I+V V LR K+ +++T RG GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGR----AVVETRRGQGYL 216 >UniRef50_A5FVA6 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A5FVA6_ACICJ Length = 244 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/228 (42%), Positives = 137/228 (60%), Gaps = 6/228 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD----YDLIILDIMLPD 56 + +L+VED++ T + L G +V +A +G +G A G +DL+I+D MLP Sbjct: 18 LAILLVEDDELTANLVRAALGAEGHLVAVAADGRDGLLRAAAGHEGRAWDLLIVDRMLPG 77 Query: 57 VNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 ++G +VR LR A MP L LTAL I+ RV+GL G DDYLVKPFA AEL ARV L Sbjct: 78 LDGLALVRTLRGAGLSMPALFLTALSGIDDRVEGLRAGGDDYLVKPFAAAELAARVAALA 137 Query: 117 RRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 RRG +V DL +D ++R VTR+G RI L +E+ +LE+ +RH G V+ R+++ Sbjct: 138 RRGEMRPSGPVLRVEDLELDRLTRAVTRAGRRIDLKPREYEVLEYLMRHAGRVVTRTMLL 197 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW+ +FD T+ ++ V RLR K+ E L+ TVRG GY + P Sbjct: 198 EDVWNFHFDPRTSVVESHVSRLRAKLGAGRE--LLHTVRGAGYRIGDP 243 >UniRef50_B4WSE4 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSE4_9SYNE Length = 243 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 130/233 (55%), Gaps = 13/233 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGW 60 +LI ED+++T L K L A ++V A +G T DL++LD+M+P ++G+ Sbjct: 10 ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR A +PI++ T LG+ RV GLE+GA+DY+VKPF+ EL+AR+R++LRR A Sbjct: 70 QVCQRLR-ATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAA 128 Query: 121 -------AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 V+ S ++ ++D +R+ G + LT EF L+E G + R Sbjct: 129 RRQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRG 188 Query: 174 LIASQVW--DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEV 223 I +W D N +DT +DV + RLR K+ + PK I T+RG GYM V Sbjct: 189 DILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMFLV 241 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 126/220 (57%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L L AG+ V A NG + + DLII+D+MLPD++G+ Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR A P++ L+A + E ++ GL +G DDY+ KPF+ E+LARV +LRR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 +++ +V DL++D S +V G I L+ EF LL +F+ + VL +S I VWD Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD D++ ++ + +R K+ +I T RG GY++ Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 248 >UniRef50_Q2W278 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=11 Tax=Bacteria RepID=Q2W278_MAGSA Length = 225 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED + E+++ GL AGFV D+ + + Y ILD+ LPD +G Sbjct: 1 MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-G 119 DIVR R+ PI++LTA + RV GL GADDYL+KPFA EL+AR+R +LRR G Sbjct: 61 DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 AA+ +E + +L D R+V G + + +E +LE LR G+V+ + + + Sbjct: 121 AALSVE--LSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGL 178 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + D N+++V V RLR ++ + T+RG+GYML Sbjct: 179 YGFDDDVTPNSVEVLVSRLRKRLQQTGAGVTVHTLRGIGYML 220 >UniRef50_C1XS75 Two component transcriptional regulator, winged helix family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS75_9DEIN Length = 219 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 129/221 (58%), Gaps = 9/221 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVN-- 58 M +L+VED+ + L + L GF LA + + DLI+LD+MLP+ Sbjct: 1 MCVLLVEDDPSLSQTLLESLAAQGFKPRLATSAEAAWEALWRDPVDLIVLDVMLPEGEEA 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G+++ + LR A PIL LTA ++ RV+GLE+G DDYL KPFA AEL+AR+R L RR Sbjct: 61 GFELAKELREAGFHQPILFLTARESLPDRVRGLEVG-DDYLAKPFALAELVARLRALARR 119 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 G + Q L V L R+V G + LT+KE+ +LE F+ + G + R + + Sbjct: 120 GE--VRPRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVINPGRIFTREEVLER 177 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 VW F+SD+N IDV VK LR K+ ++ +I+TVRG+GY Sbjct: 178 VWGPGFESDSNLIDVYVKNLRKKLYDN----VIETVRGLGY 214 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++ED + + L + V +G G HL T +DLIILDIMLP ++G Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR+ N PIL+LTA + RV GLE GADDYL KPF+ EL ARV+ LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 122 VIIESQFQVAD------LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 ES Q D L +D R++T ITLT+KEF LL + H G+V R + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGY 219 VW + ++ + RLR K++ D PK + TV GVGY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGY 228 >UniRef50_UPI0001C318D2 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318D2 Length = 224 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++EDE +++ +GL G+ V +A +G+ G A+ D DL++LD+MLP +G Sbjct: 1 MRILVIEDETAIADFVQRGLQAEGYAVSIAGDGIEGERRALHDDVDLVVLDVMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +R +P+++L+A T++ RV GL+ GA DY+ KPF+F EL ARVR LRR Sbjct: 61 AVLSSIRRVKPELPVVMLSARATVDDRVAGLDGGATDYVTKPFSFDELAARVRAHLRRPR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + A + +DL+ R V R G + L+++EF LL +FLRH + L R I S VW Sbjct: 121 QRDA-TTLSAAGIELDLLGRNVRREGVELRLSAREFDLLAYFLRHPDQALSRQQILSAVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD TN ++V ++ LR K++ P I T+R VGY L Sbjct: 180 GYDFDPGTNVVEVYIRYLRRKLELPGRPTPIDTLRSVGYRL 220 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 131/232 (56%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNG---LNGYHL------AMTGDYDLIILDI 52 ++L+VEDE + + L + GF VD+A +G LN + ++T + DL++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP VNG D R+LR +PIL+L+A T RV GLE+GADDYL KPF EL+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RTLLRRGAAVIIESQ--FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 R LLRR E+ + L + +V +TL+ KEF LLE F+RH V Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 R + ++W ++F D+ IDV ++ LR KI+ N P + TVRG GY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ E L + L +A + +D+A +G G YD I+D+ LP ++G Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR PIL+LTA + +V+GL+ GADDYL KPF EL+AR++ L+RR A Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A Q ++ S ++ ++L+ E+ L E+F+ H GEV +S++ ++ Sbjct: 120 AGKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D +FD D+N I+V ++RLR K+D + + LI+T+RG GY L+ Sbjct: 180 DQDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLK 221 >UniRef50_B2UQC6 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiaceae RepID=B2UQC6_AKKM8 Length = 232 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI++DE++ L LT AG+ V +NG G D IILD+ LPD+NG ++ Sbjct: 8 ILIIDDERQIRRLLNLTLTGAGYHVRECENGQLGLSETALKRPDAIILDLGLPDINGLEV 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 ++ LR + +PIL+LTA + +V L+ GADDYL KPF+ ELLAR+R +LRR Sbjct: 68 LKQLREWTQ-VPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNRPD 126 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 S F++ ++VDL SR+V + I LTSKE+ +L L HQG+V+ + ++W Sbjct: 127 REPSVFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIWGP 186 Query: 183 NFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDG 226 + DT+ + V + LR K+ D+D E ++I+ G+GY + V DG Sbjct: 187 QHEEDTHYLRVHIAHLRQKLGDSDPENRIIRAESGLGYRI-VADG 230 >UniRef50_B3EBC9 Two component transcriptional regulator, winged helix family n=2 Tax=Geobacter RepID=B3EBC9_GEOLS Length = 232 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/228 (46%), Positives = 147/228 (64%), Gaps = 5/228 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDY-DLIILDIMLPDVNG 59 M++L+VEDE+K E L GL G+ V A +G G+ + DY DL++LD+MLP +G Sbjct: 1 MRVLVVEDERKIAEALKLGLEAEGYQVVTAASGEEGF-FCLNADYFDLMLLDLMLPGHDG 59 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 ++++ LR+ +P+L+LT T+E RV GL+ GADDYLVKPFAF ELLAR+R LLRRG Sbjct: 60 LEVLQTLRAKGFTLPVLILTGRDTVEDRVLGLDSGADDYLVKPFAFPELLARIRLLLRRG 119 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + +ADL ++L + + R G + LTS+EF LLE+ LRHQG V+ R ++A V Sbjct: 120 RHETA-NVLTLADLELNLPTHQALRDGQLLDLTSREFELLEYLLRHQGHVVSREMLAHDV 178 Query: 180 WDMNFDSDT--NAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 W + S N IDV + RLR K+D F KLI+T+RGVG+M D Sbjct: 179 WKVRERSTPLDNVIDVNIARLRRKLDGPFPLKLIRTIRGVGFMATAED 226 >UniRef50_A5VCP5 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A5VCP5_SPHWW Length = 232 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG-DYDLIILDIMLPDVNG 59 M+LL+VED + + GL GFV D+A + L AM G YD I+LD+ LPD +G Sbjct: 8 MRLLVVEDNDRMAALIADGLRRRGFVCDIALD-LAQADDAMAGAQYDAIVLDLGLPDGDG 66 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 D + R + P ++ TA G +E RV GL+ GADDY+VKP EL AR+R LLRR Sbjct: 67 IDWLAGRRKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLRR- 125 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V + +V L D SR + + + L+ +E LLE +R G V+ R +I + + Sbjct: 126 PGVRTQPVIEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENAL 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + N NA++ AV RLR K+D P + TVRGVGYML+ Sbjct: 186 YSFNDPVTPNAVEAAVSRLRRKLDEAAMPGTLHTVRGVGYMLK 228 >UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnospiraceae RepID=C2KX66_9FIRM Length = 228 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK + + L A + VD A +G A T YDL+ILD+M+P +NG+ Sbjct: 1 MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR G+PIL+LTA +E R++GLE GAD YL KPF ELLA + LLRR Sbjct: 61 QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +DL S+ ++ + L+ KEF L+ L+ + ++L + I +VW Sbjct: 121 QEV--NSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYML 221 + D+ N ++V V LR K+ E ++ IQ+ RG+GY L Sbjct: 179 GYDSDAVENHVEVYVGFLRKKL-RLLESRVSIQSRRGLGYFL 219 >UniRef50_Q1IW75 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococcus RepID=Q1IW75_DEIGD Length = 220 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 126/226 (55%), Gaps = 11/226 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ + E + L EAG+ V G G A+ G+Y LI+LD+MLP ++G+ Sbjct: 1 MRLLLVEDDPRIAEPTLEALREAGYAVTWRQTGPAGLEEALLGEYPLIVLDVMLPGMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 + R LR+AN IL LTA G +E RV+GL+LG D YLVKPFA ELLA +R L RR Sbjct: 61 AVARELRAANVAGAILFLTARGELEDRVQGLDLGGDAYLVKPFAVPELLATLRALTRRER 120 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 GA + F +D V+R VT G + +T +E+ LLE + R + Sbjct: 121 GQGAPRV---AFAGGRGRLDTVARTVTWDGEEVAVTGREYALLEVLVLSPDRWFTREELL 177 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +VW F + +DV V+ LR K+ P+ + + RG GY +E Sbjct: 178 DRVWGPEFGGEARIVDVYVRYLRRKL----APEAVSSERGRGYRVE 219 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ E + + L AGF VD A +G +A T DL++LD+MLP ++G + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR A++ +P+++LTA R+ GLE+GADDY+ KPF+ EL RV+++LRR Sbjct: 117 VFRRLR-AHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 122 VIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + ++ + L+VD +R TR G + LT +EF LL F LR G R + Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLE 222 VW ++ D + + V ++RLR KI++D P+++ TV GVGY + Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 279 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 137/228 (60%), Gaps = 8/228 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+LIVED+ + + L + G+ ++ A +GL +Y ++I+DIM+P ++G Sbjct: 4 LKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGI 63 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + +R +R +K +PI++L+A G ++ GL +GADDY+VKPF+ EL+ARV+ +RR Sbjct: 64 ESMRRIREKSK-VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAI 122 Query: 120 ----AAVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 I E++ ++ D+ D+ + VT+ G +TLT+KE +L+ F + V + Sbjct: 123 YYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQ 182 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 I VW F SD N + V ++RLR KI++D PKLI+TV G+GY L Sbjct: 183 IYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE L L + G+ V +A +G + A DL+++D MLP V+G ++ Sbjct: 5 VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64 Query: 63 VRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 R LR + +PI++LTA G RV+GL+ GADDY+VKPF+ EL AR+R +LRR Sbjct: 65 CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E + D+ +D V+ +V R+ I L EF LL++ ++H G V R + VW Sbjct: 125 PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + +DV V RLR ++N E I+TVR GY +V Sbjct: 185 GSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 127/218 (58%), Gaps = 1/218 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVED + + + L + G+ V A + + + + YD +++D++LP +NG++ Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 V LR + +PIL+LTAL I +V+GL GADDYL KPF F ELLAR+++L+RR + Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRR-SN 125 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L ++ SR+VT T + ++ +EF LLE FLR+ G V R I +VW+ Sbjct: 126 ITKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWE 185 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +N IDV + LR K+ + IQTV G GY Sbjct: 186 NEKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGY 223 >UniRef50_C3WHY2 Two-component response regulator n=8 Tax=Fusobacterium RepID=C3WHY2_9FUSO Length = 236 Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+VED+K LT L ++VD A +G G L YD+++LD+MLP +G Sbjct: 14 IKILLVEDDKNIQRLLTLELRHKEYLVDSAYDGEQGMELFERNYYDVVLLDLMLPKKSGK 73 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + R N PI+++TA +I +V+ L+LGA+DY+ KPFA ELLAR+R R Sbjct: 74 ELCQEFRKLN-NTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 132 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + D+ +DL +++V I LT EF +LE+F++++G R I VW Sbjct: 133 NFVDKQFYLEKDIKLDLSAKRVYLREEEINLTKTEFLILEYFMKNKGLSCSREKIIIDVW 192 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 +FD + +DV + LR KID D + I T+RG GYM + + Sbjct: 193 GYDFDGEEKIVDVYINSLRKKIDLD--NRYIHTIRGFGYMFQYKE 235 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE L L + G+ VD A++G +L YDL ++D+ LP G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ R K PIL+LTA G + +V GLE GADDYLVKPF AEL+AR+ LLRR + Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q + +D ++ V G+ + LT+ E+ LE+ + G+ + ++ + ++ Sbjct: 121 G-FSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 +FD D+N I+V + RLR K+D D K I T+RG GY Sbjct: 180 AQDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGY 218 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 133/224 (59%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ G+ L GL+++GF VD +G T + ++LD+ LP +G Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+L+LTA +E +V+GL+LGADDY++KPF E+ AR+R L+RR A Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ D+ +D +R VT+ G + LT +EF LL L+ G VL R ++ Q++ Sbjct: 120 HGKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + +NA++V V LR K+ ND +I+TVRGVGYM P Sbjct: 180 TWDEGVGSNALEVHVHHLRRKLGND----VIRTVRGVGYMAAPP 219 >UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89NT7_BRAJA Length = 224 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLIVED + + GL+ AG+ D+ + + Y +ILD+ LPD +G Sbjct: 1 MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR + +P+L+LTA G ++ RV GL GADDYL KPFA EL+AR+ +LRR Sbjct: 61 SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ S ++A+L+ D SR++ ++++E ++LE LR QG V+P+ + ++ Sbjct: 121 QLLGRS-LRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIF 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + +NA++V V RLR ++ +I T+RGVGY++ Sbjct: 180 GLEGEVASNAVEVYVSRLRKQLTEHGAKVVIHTIRGVGYLM 220 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 17/232 (7%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+DE E L+ L ++G+ V++A +G L + DL++LDIMLP+V+G Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTA--LQRAPEADLVLLDIMLPEVDGL 58 Query: 61 DIVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 ++ R L++ G+PI++LTA RV GLELGADDY+VKPF+ ELLARV+ +LRR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 GAAVII--------ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 A+V E + L +D S + I LT KE+ LL+ + + G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKL---IQTVRGVGY 219 R + ++W + DT +DV ++ LR K+ +D P + I+TVRGVGY Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDD--PTVSDAIETVRGVGY 228 >UniRef50_C7MLF5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=10 Tax=Bacteria RepID=C7MLF5_CRYCD Length = 234 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 11/230 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+K ++ L G+ VD A +G +G A++ DYDLI+LDI+LP +NG + Sbjct: 3 KILIVEDEEKIARFIELELKHEGYEVDKASDGRSGVEQALSADYDLILLDILLPQINGLE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R +R K P ++LTA + +V GL+ GADDYL KPFA ELLAR+R L+ + Sbjct: 63 VLRRIRR-EKDTPTIMLTARDAVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKHHKS 121 Query: 122 V----------IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 + +++D+ R+V + + LT++EF +L + H G V+ Sbjct: 122 PDQPTSLSPEPTATKTLSIKGVLLDIDRREVRVNSDPVELTNREFEVLRCLMEHAGVVMH 181 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 R IA+ F D+N +DV + LR KID+ + KLI TVRGVGY++ Sbjct: 182 RERIAADALGYEFMGDSNNVDVHIAHLRAKIDDKHDIKLISTVRGVGYVI 231 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+VED+ L+ L G+ V A +G G A+ DL++LD+MLP++NG++ Sbjct: 7 SILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFE 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 +++ LR + P+++L+A G ++ GL LGADDY+VKPF ELLAR++ +LRR Sbjct: 67 VLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYP 126 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 A D+ VD+ +R V R+ T + LT++EF LL FL H G R + S Sbjct: 127 SAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSG 186 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 W +++ +D +++LR K + D E P+ TVRG+GY E Sbjct: 187 AWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+K L+ L + G+ V++A +G+ + + DL++LDIMLP+ +GW+ Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTA +V GL++GADDY+ KPF ELLAR+ +LRR + Sbjct: 63 VCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 VIIESQFQVA-DLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +SQ VA +DLV R V G + L+ +EF +L+ L G V R +I +W Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLE 222 NF + A+DV ++ LR K+++D PK I TVR +GY + Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 130/226 (57%), Gaps = 7/226 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + L L + GF V A +G GD+DLI+LD+MLP V+G I Sbjct: 4 ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63 Query: 63 VRMLRSANKGM-PILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 R +R+A GM PI++LTA ++ GLELGADDY+ KPF EL+AR+R +LRR A Sbjct: 64 CREVRAA--GMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 122 VIIE---SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + V DL++ R+ +G + LT++E+ LLE RH G V R + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEV 223 VW +F D +DV V+R+R K++ D P+ ++T GVGY LE Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEA 227 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 136/231 (58%), Gaps = 11/231 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI++D+++ + + L + F A NGLN L ++DLIILDIMLP ++G D+ Sbjct: 13 ILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGLDL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 +M+R + MPI++L+A +I RV GLELGADDY+ KPF+ ELLARV+ LRR Sbjct: 73 CQMIRQTH-TMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQGD 131 Query: 123 IIESQFQVADL--------MVDLVSRK-VTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 + + + +++ L ++D + + R T I L+ +E+ +L FL H G +L R Sbjct: 132 LSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILNRD 191 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEV 223 + ++D + DS IDV + RLR KI+ D P+L+ T+RG GY + Sbjct: 192 QLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQFKT 242 >UniRef50_B9L7R6 Response regulator receiver domain protein n=2 Tax=Nautiliaceae RepID=B9L7R6_NAUPA Length = 221 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 150/221 (67%), Gaps = 3/221 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED++K + + K + G+ +D+A +G G ++A +YD++I+D MLP ++G Sbjct: 1 MKILLIEDDEKIAKNIEKVFRQIGYRIDIAKDGEEGLYMAQNNNYDVLIVDWMLPKISGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+++ L+ K P L+LTA IE +V+GL + ADDYL KPF F EL+ARV+ L RR Sbjct: 61 DLLKKLKKE-KNTPALILTAKSDIEDKVEGLNV-ADDYLTKPFEFEELIARVKALYRRSN 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ +VADL ++ +++V R+G I LT+K+F LL++ + ++ +++ +I S +W Sbjct: 119 N-LNDNIIRVADLELNPETKEVRRAGKLIELTAKQFELLKYLMINKNKIVNTDMIQSNLW 177 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +M+ + ++N I+V + LR KID DF+ KLI+T RG+G+ L Sbjct: 178 EMDDEINSNVINVYISHLRKKIDKDFDKKLIKTYRGMGFKL 218 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 7/224 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI ED+ + LT+ L ++G+ VD NG+ +DL+ILD+ LP + G Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R LR+ N +P+L+LTA +++ RVKGL+LGADDY+ KPFA EL ARVR L RRGA Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + L D V R + + L+++E LLE L+ G ++ + + + Sbjct: 165 GG-GPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLC 223 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK--LIQTVRGVGYMLE 222 + + NAI+V V RLR KI EP I TVRG+GY LE Sbjct: 224 EWGEEVSNNAIEVYVHRLRKKI----EPSGVRITTVRGLGYCLE 263 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 3/219 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D++ E + L GF +G + + DL++LD+MLP +G + Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R + +PI++LTA V+GLE GADDY+ KPF AEL+ARVR LR G Sbjct: 93 VCRQIRGESD-VPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ ++AD+ +D+ VTR G RI+LT EF LL R +V R L+ QVW Sbjct: 152 KAPET-LRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG 210 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGY 219 +DT ++V V+RLR KI+ D E P+++ TVRGVGY Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 249 >UniRef50_A5UQY1 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A5UQY1_ROSS1 Length = 227 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+++ + + L + + VD+ +G G A+ G Y + I+D MLP+ +G Sbjct: 1 MKVLLIEDDQRLARLIARVLRDEHYQVDMVHDGDTGLEYALRGVYQVAIIDWMLPERDGP 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I R +R+A +LLLTA G +E ++ G + GADDYLVKPFAF ELLARVR L RR + Sbjct: 61 SICRAVRAARLPTALLLLTARGQVEDKIVGFDSGADDYLVKPFAFEELLARVRALGRRFS 120 Query: 121 AVIIES-QFQVADLMVDLVSRKVTRSGTR-ITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +S + +V DL++DL R GTR + LT E+ LLE+ +R+ G+ L R I Sbjct: 121 LQPDDSNELRVGDLVLDL-RHHTARRGTRPLDLTPTEWNLLEYLMRNAGQALSRQQILDH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW + D +DV + LR K++ E I TVRGVGY LE Sbjct: 180 VWSYDHDVQPQMVDVYIAYLRRKLNASGERDPIVTVRGVGYRLE 223 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 9/224 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLAD--NGLNGYHLAMTGDYDLIILDIMLPDVNG 59 ++LIVED++ + L LT A F +L D NG + Y DL ILD+MLP +NG Sbjct: 3 RVLIVEDDENIRQLLK--LTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNG 60 Query: 60 WDIVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 +DI++ +RS K +P+++L+A ++ GL+LGADDYL KPF+ EL AR+R+LLR Sbjct: 61 YDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLR 120 Query: 118 RGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 R E Q+ L +DL R VT + LT KEF LL++ +++G + R + + Sbjct: 121 RSKKD--ERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELIN 178 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 Q+W +F ++ +DV + LR K+ N++ IQ+VR VGY L Sbjct: 179 QIWGYDFIGESRTLDVHINSLRKKLGNEY-AHWIQSVRQVGYRL 221 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 9/233 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+ E + L + V A NG G+ + +T DLIILD+M+P +GW+ Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + +R + +PI++LTA G R+ GL +GADDYL KPF+ EL+ RV+ +LRRG Sbjct: 63 LCGEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 VIIESQ------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 V I+++ + DL + +R V + LT KEF +L +H +V RS + Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLEVPDGQ 227 +WD + +N + V V RLR K++ + + I TV G+GY E P+G+ Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE-PNGR 233 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 133/222 (59%), Gaps = 5/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ G L L AGF VD A +G + T Y L+ILD+ LP ++G Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+++ LR +P+L+LTA T +V+GL+ GADDYL KPF AEL++R R L+RR Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + L VD V++ V++ G R+ LT++E+ +L L H G PR+ I ++ Sbjct: 130 GRGSE-LIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLY 188 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + ++NAI+V V LR K+ D +I+TVRG GY+++ Sbjct: 189 GWHEEVESNAIEVHVSNLRKKLGGD----VIRTVRGFGYVVD 226 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 336 3e-91 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 335 8e-91 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 333 3e-90 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 330 2e-89 UniRef50_Q026B5 Two component heavy metal response transcription... 330 3e-89 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 329 5e-89 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 329 6e-89 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 329 6e-89 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 328 1e-88 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 324 2e-87 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 323 3e-87 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 320 2e-86 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 319 4e-86 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 318 6e-86 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 317 1e-85 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 317 2e-85 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 317 2e-85 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 316 3e-85 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 316 3e-85 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 316 4e-85 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 315 6e-85 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 315 7e-85 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 315 9e-85 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 314 1e-84 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 314 1e-84 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 314 1e-84 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 314 2e-84 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_B8G179 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 313 2e-84 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 313 3e-84 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 313 3e-84 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 313 3e-84 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 312 4e-84 UniRef50_B8G869 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 312 6e-84 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 312 6e-84 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 312 8e-84 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 312 8e-84 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 311 1e-83 UniRef50_Q6AQP4 Probable two-component system response regulator... 311 1e-83 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 311 1e-83 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 311 1e-83 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 310 2e-83 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 310 2e-83 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 310 2e-83 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 310 3e-83 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 309 3e-83 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 309 4e-83 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 308 7e-83 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 308 7e-83 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 308 9e-83 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 308 1e-82 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 308 1e-82 UniRef50_UPI0001B559F0 two-component system, response regulator ... 308 1e-82 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 308 1e-82 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 308 1e-82 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 307 2e-82 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 307 2e-82 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 307 2e-82 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 307 2e-82 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 307 3e-82 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 306 5e-82 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 305 5e-82 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 305 1e-81 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 304 1e-81 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 304 1e-81 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 304 1e-81 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 304 2e-81 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 303 2e-81 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 303 2e-81 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 303 3e-81 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 303 3e-81 UniRef50_UPI00017468BB two component transcriptional regulator, ... 303 3e-81 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 303 3e-81 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 303 4e-81 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 303 4e-81 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 302 4e-81 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 302 4e-81 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 302 5e-81 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 302 5e-81 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 302 6e-81 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 302 6e-81 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 302 7e-81 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 302 7e-81 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 301 1e-80 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 301 1e-80 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 300 2e-80 UniRef50_C3QD36 Two-component system response regulator n=8 Tax=... 300 2e-80 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 300 2e-80 UniRef50_A4CE30 Probable two-component response regulator transc... 300 2e-80 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 300 2e-80 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 300 2e-80 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 300 2e-80 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 299 4e-80 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_UPI00016C506D two component transcriptional regulator, ... 298 6e-80 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 298 7e-80 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 298 8e-80 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 298 8e-80 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 298 9e-80 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 298 1e-79 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 298 1e-79 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C9ZA01 Putative two-component system response regulator... 297 2e-79 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 297 2e-79 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 297 2e-79 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 297 2e-79 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 297 3e-79 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 296 3e-79 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 296 3e-79 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 296 3e-79 UniRef50_D1C280 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 296 4e-79 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 296 4e-79 UniRef50_C8W041 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 295 5e-79 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 295 5e-79 UniRef50_A4AL32 Putative two-component system response regulator... 295 6e-79 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 295 7e-79 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 295 8e-79 UniRef50_Q1R1E2 Two component heavy metal response transcription... 295 8e-79 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 295 1e-78 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 294 1e-78 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 294 1e-78 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 294 1e-78 UniRef50_B0C620 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bact... 294 2e-78 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 293 2e-78 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 293 2e-78 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_B8G223 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 293 3e-78 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 293 3e-78 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B7KB48 Multi-component transcriptional regulator, winge... 293 4e-78 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 293 4e-78 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 292 5e-78 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 292 7e-78 UniRef50_B2IER4 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_A4J267 Two component transcriptional regulator, winged ... 292 8e-78 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 292 8e-78 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 292 8e-78 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 292 8e-78 UniRef50_B0TXI9 Response regulator receiver protein n=14 Tax=Fra... 292 9e-78 UniRef50_A9HHL1 Probable two-component response regulator transc... 291 1e-77 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 291 1e-77 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 291 1e-77 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 290 2e-77 UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaer... 290 2e-77 UniRef50_A1SID6 Two component transcriptional regulator, winged ... 290 2e-77 Sequences not found previously or not previously below threshold: UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 314 2e-84 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 308 6e-83 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 299 4e-80 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 299 4e-80 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 297 3e-79 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 297 3e-79 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 296 4e-79 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 295 8e-79 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 295 1e-78 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 293 4e-78 UniRef50_C4L340 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 291 1e-77 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 291 1e-77 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 291 1e-77 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 290 2e-77 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 290 2e-77 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 102/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE +T L +GL E G+ VD+ +G + A YD I+LD+MLP ++G+ Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR A + P+L+LTA G ++ R++GL+ GADDYL KPF+F EL AR+R L+RRGA Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + ++ DL +D +V R+G+ + L++KEF LL +RH EVL R+ I VW Sbjct: 150 -VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D FD +N +D V+ +R KID P LI+TVRGVGY L P Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRTP 252 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 106/221 (47%), Positives = 138/221 (62%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE + L + L E + VD+A +G G LA+T YDL ILDIMLP ++G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R +R A P+LLLTA T+E RV GL+ GADDYLVKPF ELLARVR L RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +DL +R VTR+G + LT+KEF LLE F+R+ +VL + +I +VW Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + D NA++ V LR KID P I TVRGVGYM Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 335 bits (860), Expect = 8e-91, Method: Composition-based stats. Identities = 97/223 (43%), Positives = 144/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE K ++++ L E GF VD G + + YD +LDIMLP +G Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR +PILLL+A +++GL GADDYL KPF+ EL+AR+R L+RR A Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + S ++V +L ++L++R+V R +I LT+KEF++LE +R G V R+ + +VW Sbjct: 166 GIGL-SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +FD TN +DV +++LR KID E KLIQTVRGVGY +E Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 137/221 (61%), Gaps = 1/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE K +++ L G+ V + ++GL+G A + DLI+LD MLP ++G DI Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LR +PI+LLTA I RV GL+ GADDY+VKPF ELLARVR LRR Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + Q DL ++ +R+V R I LT+KEF LLE+ + H +VL R I +VW Sbjct: 126 DPD-LLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGY 184 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F D+N I+V V+ LR K++ + E +LIQTVRGVGY+L Sbjct: 185 DFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 105/224 (46%), Positives = 153/224 (68%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDEKK +++ +GL E G+VV+LA++G +GY A + YD+I+LDIMLP +G Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + +P++L+TA G ++ R++GL LGADDYL KPF EL+AR++ L RR + Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S QV DL+V+L +R+V R G + LT++EF LLE+ +R G VL R+ I VW Sbjct: 137 GKSL-SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVW 195 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 +FD TN +DV V+RLR K+D + LI+TVRG GY + Sbjct: 196 GYDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 117/225 (52%), Positives = 157/225 (69%), Gaps = 2/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK+ ++L +GL AG+ VD A G L DYDL++LD MLPD++G Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +RS G P+L+L+A G ++ RVKGLE GADDYLVKPFAF ELLARVR LLRRG Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + QV+DL +D + RKVTR I L KEF +LE+ +R++G L R++I VW Sbjct: 121 PT--PERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 DM++D TN +DV ++ LR KID+ F+ KLIQTVRG+GYM+E PD Sbjct: 179 DMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPD 223 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 150/228 (65%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED KK E + K L GF+VDLA +G G LA++ +YD IILDI+LP ++G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 DIVRMLR-SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 +I R LR +PIL+LTALG++E+RV+GL +GADDY+ KPF EL+ARVR L+RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V+ + + DL+++L +R+V+ G + L+SKEF+LLE F+R+ G V R I ++ Sbjct: 121 -QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 W+ F+ +N +DV V LR K+ + I+TV +GY L+ D + Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKEDDK 227 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 99/226 (43%), Positives = 136/226 (60%), Gaps = 2/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLI+EDE +L +GL E F VD A +G +G L M+ DYDL ++D MLP ++G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR A +P++ LTA T++ V GL GADDY+ KPFAF ELLAR+R LR Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLR--Q 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 L +D + + + +TLT KEF LLE+ LR+ V RS I VW Sbjct: 119 NTPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 D++FD+DT+ IDV V LR K++ LI+TVRGVGY++ P+ Sbjct: 179 DIHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRTPEA 224 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 113/223 (50%), Positives = 159/223 (71%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+K YL+KGL E+G+VVD DNG G H+A T YDL+++D MLP+++G Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VRMLR+ P+L+L+ALG ++ RV+GL G DDYLVKPF+F+ELLAR+ LLRR Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 AVII-ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + +VADL +DL++R V R+G I L +EF LLE+F+R+ G+VL R+++ +V Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 WD +FD TN IDV + RLR KID DFE L+ T+RG GY+L Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLR 223 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 102/223 (45%), Positives = 151/223 (67%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+++T ++L K L E G DLA +G G LA G YD++I+D MLP ++G Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ P+L+L+ALG ++ RVKGL G DDYL KP+A++ELLARV L RR A Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ V DL++D +S +VTRSG I L +E+ LLE+ ++H G+V+ R+++ VW Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN IDV V RLR KID +F+ L+ TVRG GY + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRD 259 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 97/224 (43%), Positives = 147/224 (65%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVN 58 MK+LI+EDEKK G L KGL + G+VVDLA +G ++ YDL+ILDIMLP ++ Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G + + LR+ N PIL+LTA +E ++ GLE GADDYLVKPF++ ELLAR+R LLRR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + +V D+ +D VS++V R I LT+KEF +LE+ +R+ ++ + I S Sbjct: 121 PKN-LMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW D+ +N ++ +K LR K++ + +I+T+RG+GY ++ Sbjct: 180 VWGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIK 223 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 102/222 (45%), Positives = 156/222 (70%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++K ++ GL ++GF VD A NG +G HLA T Y + I+D+MLP ++G Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR PI++L+A ++E RV+GLE G DDYL KPF+FAELLARV+ L+RR Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ V +L ++L++R+V+R T + L +EF LLE+F+R+ G+VL +++I VW Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D +FD TN +DV V RLR KID D++ K++ T+RGVGY+L+ Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLK 222 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 145/223 (65%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ K ++ KGL + G+ VD A +G G LA + YD ++DIMLP+++G Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VR LR+ MP+L L+A ++E RVKGL+ G DDYL KPFAFAEL AR++ L+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ D+ +DLVSR VT G + L +EF+LLE+ LRH G + + +I VW Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN +DV + RLR KID D I+T+RGVGY+ + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPD--KTRIETLRGVGYVFKA 226 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 101/225 (44%), Positives = 152/225 (67%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VEDEKK +TK L + + VD +G +YD IILDIMLP ++G+ Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ +R+ +PILLLTA I+ +VKGL+ GADDYLVKPF F EL+AR+R LLRR + Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ VA+L VDL ++ V R G I L+ +E+++LE+ +R++G++LPR I +W Sbjct: 121 GN-ADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + ++ TN IDV ++ LR KID+ + PKLI T+RG+GY+L V + Sbjct: 180 NYEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRVDN 224 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 108/223 (48%), Positives = 154/223 (69%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE K ++ KGL E VD+A +G G ++A+ YD+I+LDI LP +NG+ Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+V+ +R P+L+LTA+G+++ ++ G E GADDYLVKPF F EL+AR+R L +R + Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 A + + +VADL +DL + R RI LT+KEF LL++ +R++G V+ R IA +V Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 WD++FD+ TN IDV V LR KID DF KLI TV G+GYML+ Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLK 228 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 145/223 (65%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+++ YL K TEAG D+A +G GY LA G YD++++D MLP +G Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V LR+ P+L+L+ALG ++ RV GL G DDYL KP+AF+ELLARV L RR + Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ ++V DL +D ++ R ITL +EF LLE+ +RH G+V+ R+++ VW Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN IDV + RLR KI+ F+ L+ TVRG GYML+ Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKA 243 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 111/224 (49%), Positives = 147/224 (65%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDE+ L K L + VD NG + YDLI+LDIM+P +NG Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ N P+LLLTA TI+ RVKGL+LGADDYLVKPFAF ELLAR+R L+RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + F++ADL+VD KVTR ITL+SKEF +LE+ +R++ VL R I VW Sbjct: 133 GN-TSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW 191 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + +++ +N IDV V+ LR K+D+ FE KLI TVRG GY+L V Sbjct: 192 NYDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRVE 235 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LIVEDE+K L L G+ V + NG G A G Y L++LD+MLP ++G + Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R LR + P++LLTA +I +V GL++GA+DY+ KPF ELLAR+R LR+ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 VIIE--SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + DL V+ +R+V R + LT +EF LL + L+H +VL R I S V Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W ++ DTN +DV ++ +R K+D +E +LI T+RGVGY ++ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 105/222 (47%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEKKT ++ K L F VD++ +G LA +D I+LDIMLP +G Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR P+LLL+A G + RV+GL GADDYL KPFA AEL+ARVR++ RR Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRS- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 QVADL +D ++R+ R GT LT++E+ LLEF +R G + R I +VW Sbjct: 120 NEPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D +FD TN +DV +KRLR K+D FEPKL+ TVR VGY+++ Sbjct: 180 DYDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMK 221 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 146/235 (62%), Gaps = 10/235 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++EDE ++ + L EAG+ V +A +G +G +A ++ LIILD+MLP +NG Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR PIL+LTALG+ E+ V GL+ GADDYLVKPF AELLAR+R+LLRR Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 ----------AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + +VADL +DL ++ +R G I LT+ E+ LLE+ +R+ VL Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 R I VW ++F+ +T +DV V LR K++ +P LIQTV G+GYML+ + Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEEE 235 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 137/222 (61%), Gaps = 1/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L++EDE K ++ LT G+ V +A +G+ G A + DL++LD MLP ++G + Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R LRS +P++L+TA + R GL+ GADDY+VKPF+ ELL+R+R LR Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR-QPR 128 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + Q DL++D V+R+VTR ++ LT+KE+ LL + + H +VL R I VW Sbjct: 129 RSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F D+N I+V ++ LR KI+ E +LIQTVRGVGY+L Sbjct: 189 CDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 103/227 (45%), Positives = 147/227 (64%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDE L +GL+ G+ A++G G +A+ D D+++LDIMLP ++G Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R LR G+P+L+LTA +E +V L+ GADDYL KPFAF ELLAR+R L+RR Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +DL+SR+V R+G ++ L+S+EF LLE+ +RH +VL R I S VW Sbjct: 121 Q-PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D FD +N +DV V+ LR K+D EP LI TVRG GY + P + Sbjct: 180 DYAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPPREE 226 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 146/221 (66%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+++ ++L + LTEAGF +D+A NG G+ LA+ YD II+D++LP ++G Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I++ LR+ P+L+L+A G++ RV GLELG DDYL KPF AELLARV +L+RR Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q + DL +DLVSR+V R L +EF LLE+ +R++G V+ R+ I VW Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 NF TN ++V + RLR K++ +P+L+QT R GY L Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+ E L L + G+ ++ A++GL L+ILD+MLP ++G++ Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R++R+ + +PIL+LTA + +V GLE GADDYL KPF ELLAR++ LLRR Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 VIIESQ----FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 +++ ++ DL + + V R+G + + KEF L F ++++ V R + Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 +VW ++ T +DV + LR KI+ D P+ + TVRG GY E Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM---------TGDYDLIILDI 52 ++L+VEDE + + L + GF VD+A +G + T + DL++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP VNG D R+LR +PIL+L+A T RV GLE+GADDYL KPF EL+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RTLLRRGAAVIIES--QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 R LLRR E+ + L + +V +TL+ KEF LLE F+RH V Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 R + ++W ++F D+ IDV ++ LR KI+ N P + TVRG GY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+D+K + L GF VD+A +G GY +Y+ +ILDIMLP+++GW+ Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 62 IVRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + +R++ N +PI++LTA + ++ GL+LGADDY++KPF+ EL+ARVR L+RR Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 120 AA-VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + DL VD S KV + L KEF LL +++ V R I + Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVPD 225 +W +F T +D VKR+R K++ + LIQTV GVGY EV + Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVKN 232 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 103/223 (46%), Positives = 154/223 (69%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE K + KGL E GF VD+A +G G LA + +YDL+ILD+ LP NG++ Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + ++R N +PI++LTALG ++ +++ ELGADDYLVKPF F EL+AR+R L+R + Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 VIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + E+ + + DL +D ++VTR G +I LT+KE+ LLEF H+G+V+ + +IA + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VWD++FD+ TN I+V + LR KID DF+ KL+ T G+GY L Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+ L+ LT + V++A++G + L T +YDLI+LDI+LP ++G Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +RS+ + +PILLLT + + GL+ GADDY+VKP EL+ARVR LLRRG Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRG- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + + L +D S +VT +++LT KE+ LLE +R+ V +I +W Sbjct: 120 GVTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDG 226 +A+ +K LR K+ P L++TV G+GY L+ + Sbjct: 180 SYEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEN 226 Score = 96.7 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+V+D+ KT E L LT G + + + D++ILDI +P ++G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 DIVRMLRS--ANKGMPILLLTALG--TIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 ++ +M+RS + +PIL LT I ++V +GADD++ KP +EL+ R+ L Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILNRL 499 Query: 117 RR 118 R Sbjct: 500 ER 501 Score = 68.2 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+ +D+ T + L L + G+ V D+G A+ D+I+LD+++P +NGW+ Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 VRMLRS--ANKGMPILL 77 + L+ K +PI++ Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 44.4 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI+ED+ + L +A G HL+ + DL+ILD++LP+ +G+ Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 IVRMLRSANK--GMPILLLTALGTIEH 86 +V L+ ++ +P+++ +A ++ Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKD-LDD 1290 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE+ +TK L + VD +G DYDLII DIM+P+V+G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + ++ LR + P+++LTA T+E ++ GL+ GADDY+VKPF F EL AR+R L+RR Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q+ D+++D+ ++VTR+G I LT KE+ +LE+ ++++ +L R I + VW Sbjct: 121 G-LATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D ++D +N +DV +K +R K+DN + +I T RG+GY ++ Sbjct: 180 DYDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVK 221 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE+ K L VD NG T YD+I++DIM+P ++G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R+ P+LLLTA +++ +V L GADDYLVKPF EL AR+ L RR A Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ V L +++ R V R G ITLT+KEF LL + ++ VL R I VW Sbjct: 121 RH-AQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + +++S +N IDV +K LR KID D KLIQTVRGVGY+L+ + Sbjct: 180 EYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTEN 224 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 123/227 (54%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ + L L ++VD +G G+ A YDLI++D+ LP +G Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR+ +PILL+TA R+ GL+ GADDYL KP AEL ARVR LLRRG+ Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 QV +L +D S +VT + + LT KE+ LLE FLRH G+V R + +W Sbjct: 121 -ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + ++ VK LR K+ I+ + G+GY L PD + Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPDSE 226 Score = 91.7 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+D+ E + L G + +N L + + + DL+ILD+ +P +G ++ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 VRMLRS--ANKGMPILLLTA-LG-TIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 + LRS + +PI+ LTA +V +GADD++ KP ELL R+ L R Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 GA 120 Sbjct: 500 TR 501 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++ED + + L + V +G G HL T +DLIILDIMLP ++G Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR+ N PIL+LTA + RV GLE GADDYL KPF+ EL ARV+ LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 122 VIIESQ------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 ES +L +D R++T ITLT+KEF LL + H G+V R + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 VW + ++ + RLR K++ D PK + TV GVGY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 104/223 (46%), Positives = 149/223 (66%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ G+ L +GL+EAG G +G A T +D ++LD+MLPD G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++VR +R G P+L+LTALG+++ RV GL GADDYLVKPFAF ELLAR+ + RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 SQ +V L++DL +RKVTR+ + ++LT EF+LLEF +R+ G+V+ R ++ +W Sbjct: 121 DRP-SSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +++ TN ++V + RLRGKID F LIQTVRG GY+L Sbjct: 180 ESDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLRT 222 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE + E + + L AG+V + A +G L G +DL+ILD+M+P ++G Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 +R +R+ + P+++LTA G ++ GLE GADDY+VKPF+ EL+ARV+ +L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +L +D S V +G ++LT KEF LL F ++G L R I +V Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 W+ ++ + +D VK LRG + I TV G+GY + + Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFDPDAAR 299 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 141/224 (62%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK + + + L + F VD+ +G G ++A+ D+D++ILD++LP +GW Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I++ +R P+L+LTAL +E+RVKGL +GADDYL KPF EL+ARV+ L+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRR-K 129 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + DL++D +RKV R G I LT KE+ +LE+ + ++ V+ + + +W Sbjct: 130 AENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLW 189 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + ++ + +K LR KID F+ K+I TVRG+GY++ Sbjct: 190 SFDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVRDE 233 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 138/224 (61%), Gaps = 4/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L++ED+ K L L GF V A +G G ++A G YD+I+LD+MLP ++G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTA I +V G + GADDY+ KPF+ ELLAR++ LLRR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 VII-ESQFQVADLMVDLVSRKVTRS--GTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + F+ DL ++ + +V R I L+ +EF LL+F + ++G VL R I + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW ++ + N +D+ +K LR KID +E K IQTVRG+G++ + Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 135/227 (59%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLIV+DE+ L +GL+ GF VD A +G G +A YD I+LDIMLP VNG+ Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++LR PIL+LTA + L+ GADD L KPF+F L+AR+R LLRR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRN- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q DL +D S +VTR I LT++EF+ LE LR++G VL + I + VW Sbjct: 120 VESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D +F+ D+N ++V + LR KID F K I T+RGVGY LE G+ Sbjct: 180 DYDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEEDGGR 226 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 13/234 (5%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L EDE K ++ GL E GFVV+ D+G Y A+ +YD+I+LDIM+P +G Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + P++LLTA ++ R++GL LGADDY+ KPF EL+AR+ ++RR A Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRS------------GTRITLTSKEFTLLEFFLRHQGE 168 + V +D ++R VT + LT++EF LLE+ +R G Sbjct: 121 GEQ-PNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGR 179 Query: 169 VLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 V R+ + VW +F+ TN +DV ++RLR KID + I++VRGVGY Sbjct: 180 VFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFR 233 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 146/221 (66%), Gaps = 4/221 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+++D+ K L + LT G+ V++A++G G ++A +L+ILDIMLP ++GW+ Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + R N PIL+L+A +E +VKGL LGADDYL KPFA ELLARV+ LLRR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR--R 120 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + Q +DL +DL +R+V R+G +TLTS+EF LL F+ H +VL R I +VW Sbjct: 121 ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWG 180 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++F +N ++V + LR KI+ D+ ++I TVRGVGY+L+ Sbjct: 181 LDFTGGSNVLEVYINMLRQKIE-DYGSRIIHTVRGVGYVLK 220 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 142/226 (62%), Gaps = 4/226 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+V+D++ E L + L+ G+ V+LA +G+ + + D ++LD+M+P ++G Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LRS +PIL+LTA ++ RV GL+ GADDYL KPFA ELLAR+R LLRR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 AVIIES----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 E+ +DL +D V+R+VTR RI+LT EF LLE + + VL RS I Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +VW +F + NA++V V LR K + + EP+LI TVRGVGY+L Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLR 228 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 8/228 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++LI +DEK+ + L K L + VD A +G L Y+L+ILD+M+P ++G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 ++ R LR+ N +PIL+LTA ++ GL +GADDY+ KPF+ E++AR++ L+RR Sbjct: 64 EVCRRLRN-NTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 A ++ L +D+ VT I+LT KE LL+FF + +V ++ Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 + VWD N+ D N + V +++LR KI+ D PK IQTV G+GY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 126/227 (55%), Positives = 176/227 (77%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE +T EYL KGL+E+GFVVD+A+NG +G H+A DYD+IILD+MLP ++GW Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +RS + P+L LTAL + RV+G ELGADDYLVKPFAFAELLAR+R LR+ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E + ++ADL +D++ R+V R TRI LT++EF+LL +R +GEVL R+ IASQVW Sbjct: 120 SKESE-RLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +NFD+DTN +DVA++RLR K+D+ F+ KLI TVRG+GY+L+ G+ Sbjct: 179 GVNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPERGR 225 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 132/227 (58%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+VEDE K L + LTE G VD +G + GDYD ++LD+MLP ++G+ Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR P+L+LTA G + R+ GL+ GADDYL KPF EL AR+R L RRG Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRG- 141 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +D +V R+ T I L+ KEFTLLE +R G V R+ + + W Sbjct: 142 PIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCW 201 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D +++ +N +DV ++ LR KID F ++T+RG GY L G+ Sbjct: 202 DAAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGR 248 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL+VED++ E + + L ++V+LA +G G LA +YDLI+LD+MLP ++G Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R PILL+T +VK L+ GADDYLVKPF ELLARVR LLRRG Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRG- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + Q L ++ S +VT G I LT+KE+ +LE FLR++ + +S + +W Sbjct: 120 GLSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 + NA+ +K LR K+ P LI+TV G+GY L Sbjct: 180 SFDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 102 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + + L GF + L ++ + + DL+ILD+ +P+++G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +++R+ +PIL L+ + +G + GADDY+ KP +EL+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 46.3 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNG-- 59 LLIV+++ + + G + +A + D+I+LD+ PD Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP 102 ++++ +R +P ++ + RVK LGA +L KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKP 476 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVED++ LT LT + V++ +G+ + L T DYDLI+LD++LP ++G Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +RS+ + MPILLLT + + GL+ GADDY+VKPF EL+ARVR LLRRG Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRG- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +L +D S +V + ++LT KE+ LLE FLRH V S+I +W Sbjct: 120 GTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDGQ 227 A+ +K LR K+ N P L++TV G+GY L+ + + Sbjct: 180 SYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEE 227 Score = 90.2 bits (224), Expect = 4e-17, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 6/121 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L V+D+ + L L G V D+ + + DL+ILD+ +P NG + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 IVRMLRS--ANKGMPILLLTAL--GTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + +++R+ +PIL LT G I ++V +GADD++ KP EL+ R+ L Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRIINRLE 499 Query: 118 R 118 R Sbjct: 500 R 500 Score = 79.8 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+ +D+ L L + G+ V G A T D+I+LD+++P +NGW+ Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 VRMLRS--ANKGMPILL 77 + ML+ K +PI++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 45.1 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++LIVED+ E A G HL+ + DL+ILD++LP+ +G+ Sbjct: 1501 VRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF 1560 Query: 61 DIVRMLRSANK--GMPILLLTALG-TIEHRVKGLELGADDYL------VKPFAFA--ELL 109 +V L+ + +P+++ +A R + L+LG ++L K F ELL Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELL 1619 Query: 110 ARV 112 R+ Sbjct: 1620 QRI 1622 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 135/238 (56%), Gaps = 13/238 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE L+ L +AG+ V A +G + L + + I+LD+MLP ++G + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR PI+++TA +V GLELGADDY+ KPF+ E+LAR++ ++RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 -----------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + V DL +D +V R+G I+LT KEF LL +F+ +G VL Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPDGQ 227 R I + VW ++ S+T +D+ + LR KI+ D + P+LI+TVRG GY V DG Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF-VGDGH 241 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED++ L + LT+ + V++A++G G+ A +YDLI+ D++LP ++G Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LRS PILL+TA R++GL+ GADDYL+KP EL ARVR LLRRG Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +V L +D +VT + LT KE++LLE LR+ V R I +W Sbjct: 121 -TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + +K LR K+ I+ V G+GY L+ Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLK 221 Score = 101 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+D+ L L G + D+ L + + + DL+ILD+ +P ++G ++ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 VRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R+ + +PI+ LTA +E + G DDY+VKP AELLAR+ L R Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 142/226 (62%), Gaps = 5/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++ IVEDE++ +L L GF ++ +NG Y M G++DL++LD+MLP ++G Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 I + +R + +PI++LTA +E +V GL++GADDY+ KPFA EL+AR+R LR+ Sbjct: 65 TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 120 ---AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 V +E + QV +L++ +V G + LT KE++LLE+ +R++ VL R I Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +VW ++ DTN +DV ++ LR K+D+ F K I TVRGVGY ++ Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVK 229 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 138/227 (60%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLI+ED + + L +G E G VD A +G NG L +G YD +ILDIMLP+++G+ Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R +P+++LTA ++E RV GLE GADDYL KPF F EL+ARV L+RR Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRS- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S + L +D V+R+ ++ L +EF +LE +R++ +V R I +QVW Sbjct: 120 GDQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +D +N +DV +K LR K+ ++ TVRGVGY + P+G+ Sbjct: 180 QKEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVANPEGE 226 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+VED+ E +T L G+ V +A+ G L DL++LD+MLP+++G Sbjct: 2 VKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGL 61 Query: 61 DIVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR- 117 D+ + +R +P+++L+A + RV GLELGADDY+ KPF+ ELLAR++ LR Sbjct: 62 DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121 Query: 118 -RGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 R + DL + S VT G ++TLT KEF LL F++ +V R + Sbjct: 122 ERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLL 181 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +VW DT +DV + LR K+ + +I++VRGVGY L V Sbjct: 182 QKVWGYTVSGDTRTVDVHISNLRSKLKSVS--PIIESVRGVGYRLAV 226 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+ + LTK LT ++VD+ +G G+ T +YDLIILDIMLP+++G Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + R+ +PILLLTA I +V+GL+ GADDY+VKPF EL+AR+R LLRRG+ Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 DL+++ + +VT +G + LT+ E+ LLE LR+ V + ++W Sbjct: 121 NNPF-PLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDGQ 227 + V+RLR K+ P I T+ G GY L+ P + Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPSTE 227 Score = 94.4 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++I++D++ L L GF V + + + D ++LD+ +P +NG++ Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 + ++LRS + +P+L L+ L + + +G DDYL KP EL R+ LRR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ +L G + G + A NG++G H A++ YD+I+LDIMLP +G+ Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+L+L+A +++ RVKGL+ GADDYLVKPFAF ELLAR ++L RRG Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 AVIIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 +S Q ++L +DL+ + R+G I L +EF L++ L + V+ ++ I QV Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W FD TN +DV V RLR K+D F+ LI T+RGVGY+L+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLK 223 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 148/223 (66%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++ED+ + +++ KGL EAG +V+ A +G G A +D+I+LD MLP V+G Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R+ P+L+L+ALG ++ R++GL G DDYL KPFA +EL+ARV L RRG Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A+ ++ + DL +DL+ R VTR+G RI LT +EF +LE+ +R G V+ RS++ VW Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D NFD TN ID V RLR K+D F+ LI+TVRG GY++ Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVRP 223 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 5/228 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+V+DE+ + + L GF V+ +G DL++LD+ML D++G+ Sbjct: 79 VRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGF 138 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR A G+P L LTA T + +V+GL LG DDY+ KPF+ +EL+ARVR +LRR Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198 Query: 121 AVII----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 + + + + ADL +D +R+V R+G + LT+ E+ LL+F L + VL R+ + Sbjct: 199 SPVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLL 258 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW +F + ++ + LR K+DN EP LI TVRGVGY+L +P Sbjct: 259 DHVWGHDFSGEGGVLETYISYLRRKVDNV-EPPLIHTVRGVGYVLRLP 305 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MK--LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVN 58 MK +L+VEDE L L + G+ V +A +G + A DL+++D MLP V+ Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 59 GWDIVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 G ++ R LR +PI++LTA G RV+GL+ GADDY+VKPF+ EL AR+R +L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 117 RRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 RR + E + D+ +D V+ +V R+ I L EF LL++ ++H G V R + Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW + + +DV V RLR ++N E I+TVR GY +V Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 131/232 (56%), Gaps = 13/232 (5%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+DE E L+ L ++G+ V++A +G A DL++LDIMLP+V+G Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 DIVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 ++ R L++ G+PI++LTA RV GLELGADDY+VKPF+ ELLARV+ +LRR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 GAAVII--------ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 A+V E + L +D S + I LT KE+ LL+ + + G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 R + ++W + DT +DV ++ LR K+ +D I+TVRGVGY Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDEK + + L + V +G + +DL+ILD+MLP V G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--G 119 + R +R N +PI++LTA G +E R+ GLELGADDYLVKPF+ EL+ARVR LLRR Sbjct: 70 VCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +L +D+ KV G + LT+ EF LL R+ G V R + +V Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 180 WDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDGQ 227 +F+ ID VK LR KI DN PK + TV GVGY E P Q Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQ 237 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 5/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VEDE+K +++ +GL F V +G GY A +D+IILDIMLP +G Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R LR PI+LLTA + RV+GL++GADDYL KPF EL AR++ LLRR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +V L +D ++R + G + LTS+EF+LLE +R +VL R + VW Sbjct: 121 GTQ-QHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGK---IDNDFE-PKLIQTVRGVGYMLEV 223 +FD TN +DV +KR+R K ++ + I+++RG GY L + Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLSI 226 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+V+DE + + L GF V+ ADNG +A T D ILD+M+P ++G+ Sbjct: 30 VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR A P L LTA +E R+ GL +GADDY+ KPF+ E++ R+R +LRR A Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 121 AVIIE--SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 E S D+ +D +VT++G + L+ EF LL + + + VL +S I Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW+ +F D N ++ V LR KID EP+LI TVRGVGY+L P Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDT-KEPRLIHTVRGVGYVLRKP 254 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++++EDE E L GLT G V +A G + + DL+ILD+MLPD++G Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR+ ++ +PI++LTA G ++ RVKGL+LGADDY+VKPF+F ELLARV + RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + QVA L ++L +R+VT G I LT EF LLE F+RH V R + S+VW Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + D+N ++V + LR KI D E KLI+TV GVGY L D Sbjct: 198 FTYVGDSNIVEVHISNLREKIG-DHERKLIRTVYGVGYTLRPDD 240 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 138/223 (61%), Gaps = 4/223 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE +T+ L + G+ VD A NG YDLI+LD+M+P ++G Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R+A P+L+LTA ++ VKGL+ GADDYLVKPF F ELLARVRTL+RR + Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S+ +L +DL + V SG +I LT KE+ +LEF + ++G +L R I VW Sbjct: 121 GNVA-SEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D ++ +N IDV +K +R K+ E + IQT RG+GY+++ Sbjct: 180 DFDYTGGSNVIDVLIKNIRKKL---GECEAIQTKRGLGYVVKD 219 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L AG+ V +G + + DLI+LD+MLP ++G Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 + R LR + +PI++LTAL + ++ GL+ GADDY+ KPF+ EL++R++ + RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + F + L V R+V G I LT KEF LL F +H+G+VL R + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPD 225 VWD +F DT +DV + LR KI+ + P+ I TVR VGY L P+ Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 98/222 (44%), Positives = 146/222 (65%), Gaps = 2/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI++D+K + +GLT G+ V +A+ G G +L + + DLIILDIM+PD++G + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-GA 120 + + LR + G+PIL++T + +I RV GLE GADDYLVKPFAF EL+ARV+ LLRR Sbjct: 64 VCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +DL+VDL +R+ R I ++ EF LL FF++H +VL R L+ +VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +F ++N ++V V LR K++ EP+LI TVRG GY+L Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLR 224 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ T +++ LT+ + VD +NG G LA YD+I+LDIMLP ++G Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LRS PILLLTA V GLE GADDYLVKPF +AELLAR++ L RRG Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V+ + + +L+++ + +VT G + LT E++LLE FLRH V R +I Q+W Sbjct: 121 QVLPD-VLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 ++ I +K LR K+ + +I+TV G GY L Sbjct: 180 TLDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 84.0 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 L++++D+ E L LT GF V N + + + DL+ILD+ +P +G ++ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 VRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELL 109 + +R ++ +PIL L+ E + L GAD YL K A EL+ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + + LT+ +VVD+A +G G+ L +YDLI+LD++LP ++G Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR M ILLLTA T +V GL+ GADDY+VKPF F EL AR+R LLRRG Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRG- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + L++D + +VT + + LT+KEF+LL+ FLR+ + R+ I Q+W Sbjct: 120 NTALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLW 179 Query: 181 DMNFD-SDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 D + N I +K LR K+ I+TV G+GY L+ Sbjct: 180 SAEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKA 224 Score = 75.2 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++++VED+ + + + L G + ++ + DL+ILD +P +NG + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 IVRMLRSANKG--MPILL----LTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +++R+ +P++ L+A I ++ +GADD + KP + L+A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 100/224 (44%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLLIVEDE L KG E V +A +G + ++D+++LD+MLPD+NG Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I R LR++ +PILLLTALGT E+ V GL GADDYLVKPF F EL ARV L RR Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 AVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + DL ++ ++ V R G I LT+KEF LL + ++ G ++ R I V Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 WD+NFD +TN +DV + LR K+D F+ KLI T++G+GY+++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIKP 224 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 135/221 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+++ ++ +GL G + +G G + + DL+ILD MLP V+G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +R+ + IL+L+ALG +E R++GL GADDYL KPF F ELLAR+ L RR Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + ADL + L + +V R+ I LT+KE ++LE FLR G + R I + VW Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 ++ D TN +DV ++RLR KID F LIQT RG+GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 96/222 (43%), Positives = 143/222 (64%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ + + KGL EAGF VD NG G A+ G Y I+DIMLP+ +G Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I+ +R+A K P+L+L+A +++ R++GL+ G DDY++KPF+F ELL RV+ L+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ + L +DL+ ++V R G +I L +KE+ LL + + G L ++ I +V+ Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 NFD TN +DV V RLR KID F +LIQT+RGVGY+L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLR 222 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+V+DE + L L + GF V A +G GD+DLI+LD+MLP V+G Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R+A PI++LTA ++ GLELGADDY+ KPF EL+AR+R +LRR A Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 122 VIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + V DL++ R+ +G + LT++E+ LLE RH G V R + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 VW +F D +DV V+R+R K++ D P+ ++T GVGY LE Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD--VN 58 M++LIVEDEKK +++ L G+ +D+ N GY +A T YD +I+D M+P + Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G D+++ LR P ++LTALG ++ GL+ GADDYL KPFA ELLAR+R +LRR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + +V L +D +R V +I LT+KE+ LL++ ++ G+ L + I Sbjct: 121 PKKAQ-PTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW+ + D N ++ +K LR KID ++ K I+TVRG+GY LE Sbjct: 180 VWNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI+ED+ + L++ G D+A +GL+G A++ +YD+IILD+MLP ++G + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + +PIL+LT+ + +V L GADDY+ KPF+ EL ARV +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 VIIESQFQ------VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 S L +D + KVT + I +T+KEF LL F+++ G R+ + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 VW ++ + ++ + RLR KI +N +PK I TV GVGY Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 100/225 (44%), Positives = 141/225 (62%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++EDE + + LT G + +A +G +G + + +D+IILD+M+P +NG Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R R+A PIL+LTALGT E+ V GL+ GADDY+ KPF AEL AR+RTL+RRG Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 AVIIE---SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 E + DL++D V++ V R G I LT+ EF LLE+ L + VL R I Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VWD+NF+ TN +DV + LR KID + + KLI TV G+GY++ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIR 225 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+ED+++ + L + L VVD+A +G+ G+ A G+YDLI+LD+MLP ++G Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR++N IL+LTA T +++ GL+ GADDYLVKPF EL AR+R L RR Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRS- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + DL +D + VT ++LT KE+ +LE FL++ +VL RS I ++W Sbjct: 120 QETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYMLEVPDGQ 227 + + S + + LR K+ + I+TV G+GY L +GQ Sbjct: 180 EFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKEGQ 227 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DEK + L L + VD A +G YD+I+LDIMLP ++G Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 + + +R + +PI++LTA G ++ GL+ GADDY+ KPF E+ AR++ +LRR Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 119 -GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + D+ +D SR + + I LT+KEF LLE + G+V R + Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLEV 223 VW ++ D +DV ++RLR KI+ N EPK + T GVGY V Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ ++L G + G V + +G++G H A+T D+D+IILDIMLP +G+ Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+++L+A ++E RV+GL+ GADDYLVKPFAF ELLAR +TL+RRG Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 AVIIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ + L +DL+ + R I + +EF L++ L + V+ ++ I V Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W FD TN +DV V RLR K+D F LI T+RGVGY+L+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 103/222 (46%), Positives = 148/222 (66%), Gaps = 2/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE + ++L +GL+E G+ V+ A++G G+ L + +DL+ILD LP +G Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R R N+ P+L LTA + RV GL+ GADDYL KPFAF ELLARVR LLRR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRR-PG 122 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + AD+ DL +++VTR GT + LT+KEF+LL FFLR+ G+VL R+ I VWD Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++D +N ++V VK LR K++ P++IQT+RG GY+LE Sbjct: 183 DSYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLET 223 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+D++K + LT L + G+ V A +G A D+++LD+MLP ++GW Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 + + +R + +PI++LTA R+ GLELGADDY++KPF+ E+LAR+R + RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 E +V D ++D SR +T +GT + LT E+ LLE FL H G+V R + Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYML 221 +V D F+ +D +K LR K+ EP I+T+ GVGY L Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED + GF + +GL GY ++DLIILDIMLP ++G Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 I R +R + +PI++LTA T +V G E+GADDY+ KPF+ L+AR++ ++RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRIT-LTSKEFTLLEFFLRHQGEVLPRSLI 175 G AVI E + ++ +R+V +G + LT KEF LL + +++ +V R + Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 QVW F D +DV +KRLR K+ ++ +P + TV GVGY + Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFD 225 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 8/229 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DE+ L L + GFV ++ +G LA YD I+LDIMLP ++G + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LRS PI++++A +V LELGADDY+ KPF+ ELLARV+ +LRR A Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 122 VII-------ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 I E + ++ L + +V + + LT KE+ LL + ++H L R Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 + ++W +F +T +DV + +LR KI DN P+ IQT+RG GY + Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFK 239 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 137/220 (62%), Gaps = 3/220 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L++EDEK ++ L G+ ++A +G+ G + DL+ILD+MLP ++G ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R + PI++LTA I+ +V+GL+ GADDYL+KPF+ ELLARVR LRR Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + +VADL+++L R++ R G R+ L++KEF LLE R+ G+V R I +VW Sbjct: 126 VTGEV-RVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-P 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + +N +DV + LR K++ E +LI TVRGVGY+L Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLR 223 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 103/232 (44%), Positives = 143/232 (61%), Gaps = 6/232 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLP-DVNGW 60 +L+VEDE+ +L +GL G+ V +AD G DLIILDIMLP D++G Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R +R+A +GMPIL+LTA + RV GL+ GADDYL+KPFAF ELLARVR LLRR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 A-----VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ ADL +D SR R RI LT++E+ LL F+RH +VL R +I Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +VW +F ++N ++V V LR ++ EP+L+QTVRG GY L +P + Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRLPTEE 237 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+ EDEK+ E L GL E G V + NG++ +AM+G++D ++LD+MLP ++G+ Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR + +PIL+LTA ++GL+ GADDY+ KPF+F+ELLAR+R + RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S DL +D S +V R I LT EF LL+ +++ G + R + VW Sbjct: 121 PH-RSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 + + N +D ++ LR K+D PKLIQTVRG GY Sbjct: 180 GYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED++ L + L + + VD AD+G G A + YDL+++D+ LP ++G Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR N PILL+TA + +++GL+ GADDYL KP EL AR+R LLRRG Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRG- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V S ++ L +D VS +VT + + LT KE++LLE FLR+ V RS I +W Sbjct: 120 EVSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + +++ VK LR ++ I+ V G+GY L Sbjct: 180 TFDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKL 220 Score = 84.8 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 14/138 (10%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL V+D+ L+ L GF + + + D DL+ILDI +P +G ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 VRMLRSANKG------MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV---- 112 +R+ + +PIL LTA V DDY+VKP EL+ R+ Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 113 -RT-LLRRGAAVIIESQF 128 R LL+R ++ ++ Sbjct: 521 ERARLLKRLSSRDAQTGL 538 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ E L L + + V+LA +G L +YDLI+ D+MLP ++G Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LRS +PILLLT + R GL+ GADDY+VKPF EL ARVR LLRRG Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A I + +L +D + +V + LT KE+ L+E +R+ V +I +W Sbjct: 121 A-IKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 A+ +K LR K+ P LI+TV G+GY L+ Sbjct: 180 TYEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKP 223 Score = 91.3 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 13/149 (8%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +++IV+D+ + E + G V D + DL++LD+ +P++ G D Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 IVRMLRS--ANKGMPILLLTALG--TIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + R++R+ + +PI+ LTA + ++V GADD++ KP EL+ R+ L Sbjct: 549 LCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYA--SGADDFISKPIVGPELVVRI---LN 603 Query: 118 RGAAVIIESQFQVADLMVDLVSRKVTRSG 146 R ++ + +D ++R ++R Sbjct: 604 RLERTRLQRRLS----TIDPLARVLSRHE 628 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + + L L + + A NG L + L++LD+M+P+++G Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +R + +PI++LTA R+ GL++GADDY+ KPF+ ELLAR+ LRR Sbjct: 67 ACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V + + L +D SR V SG I+LT KEF LL F+++ +V R + Q+ Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W ++ + +D +K LR K+ IQTV G+GY E Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFE 226 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 1/217 (0%) Query: 7 EDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRML 66 ED++ + + L +V+DLA +G+ G +A YDLI++D MLP ++G + + L Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIES 126 R+ PI+LLTA RV GL+ GADDYLVKPF F ELLAR+R LLRR I+ Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEG-IVSP 120 Query: 127 QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDS 186 Q DL +D S +VT I LT KE+ LLE FLR+ + + +VW Sbjct: 121 VLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTP 180 Query: 187 DTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++ +K LR K+ +I TV G+GY L Sbjct: 181 TVASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLRT 217 Score = 97.9 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL+V+D+ L K L GF +++ + + + DL++LDI +P ++G+D+ Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 VRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++RS +PIL ++A + + +GADDY+ KP EL+ARV L R Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 121 AVIIESQF 128 + ++ Sbjct: 691 DRRLRTEI 698 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 126/222 (56%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L L AG+ V A NG + + DLII+D+MLPD++G+ Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR A P++ L+A + E ++ GL +G DDY+ KPF+ E+LARV +LRR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 +++ +V DL++D S +V G I L+ EF LL +F+ + VL +S I VWD Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +FD D++ ++ + +R K+ +I T RG GY++ Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRT 250 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 128/241 (53%), Gaps = 20/241 (8%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE + + L + G+ V+ +G ++ DYDLIILD+MLP ++G + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 IVRMLR-SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR-RG 119 + R +R +++ +P+++LTA ++ GLE+GADDY+ KPF+ ELLARV+ LR R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 -----------------AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFF 162 E + L + + + LT KEF LL Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 163 LRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 + + G+VL R + ++W +F DT +DV ++ LR KI + P L++TVRG+GY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 222 E 222 + Sbjct: 243 K 243 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+ E + L + V A NG G+ + +T DLIILD+M+P +GW+ Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + +R + +PI++LTA G R+ GL +GADDYL KPF+ EL+ RV+ +LRRG Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 120 ----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 A + + DL + +R V + LT KEF +L +H +V RS + Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPDGQ 227 +WD + +N + V V RLR K++ + I TV G+GY E P+G+ Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE-PNGR 233 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 143/223 (64%), Gaps = 4/223 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+K+ + L GL E G+ +A +G G L + + L+I DI+LP ++G+++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-- 120 + +R AN +P+L+LTALG+ + ++ G + GADDY+VKPF F EL AR++ LL+R A Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +V+ + DL +D R+V R G I L+ KE+ LL + +++ V+ R IA + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW+ +FD+ TN IDV + LR KID DFE KLI T G+G++L Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFIL 226 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+K L+ L + G+ V++A +G+ + + DL++LDIMLP+ +GW+ Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTA +V GL++GADDY+ KPF ELLAR+ +LRR + Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 VIIESQFQVAD-LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +SQ VA +DLV R V G + L+ +EF +L+ L G V R +I +W Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 NF + A+DV ++ LR K+++D PK I TVR +GY + Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 135/227 (59%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE++ + GL + GF V+LA +G G DYD I+LD+MLP ++G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR+A PIL+LTA E GL LGADDYL KPF++ L+AR+ LLRR A Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + V DL++D R V R T I LT +EF++LE+ +R+ G ++ I VW Sbjct: 121 PARPVN-LVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +FD + N ++V V LR KID F I+TVRG GY++ D + Sbjct: 180 GADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDEDPR 226 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 140/227 (61%), Gaps = 6/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LIV+D+ + ++L + L + ++ A+NG YDLI+LDIMLP ++G Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R A P+L+LTA G +E RVKGL+ GADDYL KPF+ AEL+AR+R LLRR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ L ++ +SR VT I+LTSKEF++LEF L ++G + R +A VW Sbjct: 126 KR--DTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVW 183 Query: 181 DMNFDSD--TNAIDVAVKRLRGKIDNDFE--PKLIQTVRGVGYMLEV 223 FD +N +DV +K LR KI + P +I+T+RG+G++++ Sbjct: 184 GNEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDD 230 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 127/229 (55%), Gaps = 4/229 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ LT L AG+ V A +G A + DLI+LD+MLPD +G+ + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA- 121 R LR+ P+L LTA +E R+ GL G DDY+ KPF E+L RVR +LRR A Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 122 ---VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + A L +D + +V +G+ + L+ EF LL FL H VL ++ I + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 VW +F DT +D VK LR K+D+ P L+ TVRGVGY L +P + Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRLPRDE 241 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L L + +D A+NG + +YDLI+LD+M+P +G + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R PI++LTA G +RV+G E G DDY+VKPF+ E++ RV+ LLRR + Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 V-------IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 ++ + L +D + +VT GT ++LT KE+ LL F + +V R Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDN--DFEPKLIQTVRGVGYMLEV 223 + +VW F D +D VKRLR K++ K I TV GVGY EV Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 1/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ + L K LT+ ++VD+A G G+ L + +YDLIILD++LP+++G Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR+ +P+L +TAL ++ GL GADDY+ KPF ELLARVR LLRRG Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + L +++ SR++T +++LT KE +LE FLR+ + R I +W Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDGQ 227 + + +K LR K+ P LI+TV GVGY L+ + + Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPIETE 228 Score = 73.6 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L V+D+ + + L L + + D L + + DL++LDI +P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + + +R + + +PI+ TA + + G D+ + K + A+LLA + ++R Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 2/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ EDE ++ +GL E G V + +G G+ + +DL+ILDI++P +NG + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 IVRMLRSA-NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + R P+++LTALGT E VKGL+ GADDYLVKPF+F EL AR++ LLRR Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +Q +L++D +R+ R I LT KE+ LLE+F+ HQG L R + VW Sbjct: 144 ETVT-NQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 202 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D NFD++TN +DV V LR KID DF+ KLI TV G+GY++ Sbjct: 203 DKNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIM 243 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 111/223 (49%), Positives = 158/223 (70%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE K YL KGL E+G+ + GL G + YDL+ILD+MLPD+ GW Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++LR +K +P++ LTA + RVKGLELGADDYL KPF++ ELLAR+++LLRR Sbjct: 61 SVLQVLRQFSK-IPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR-Q 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E++ ++DL +DLV KV R+G I L+ EF LL + L ++ +++ R I S+VW Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++NFD+DTN IDVAV+RLR KID +EPKLI T+RG+GY + V Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKISV 221 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 ++LL+VED+ LT LT+AG+VVD A +G G+ L T YD ++LDI LP ++G Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R + MP+L+LTA +V+G + GADDY+ KPF E+LAR+R LLRR A Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +S+ +++D + +V+ G + LTS E+ LL + + H G V+ R+ + ++ Sbjct: 149 GH-AQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLY 207 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D +FD D+N I+V V R+R K+D D +IQTVRG+GY+L P Sbjct: 208 DQDFDRDSNTIEVFVGRIRKKLDVD----IIQTVRGLGYLLTPP 247 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ E L+ AGF V A +GL G +A DLIILD+MLP ++G+ + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR---RG 119 R + + +PI+LLTAL HR+ GLELGA DY+VKPF+ ELLARVR +LR R Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + V + +D SR+V I L+ KEF LL + + G L R L+ +V Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 W +F IDV V+ LR K++ D P LI+TVRG+GY + P Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDP 228 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+VED+ E + L F VD+A +G G +A+T Y+LIILD+MLP ++GW+I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 R LR +A + PI++LTA +V GL++GADDYL KPF E LARV LLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 -VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L + S + + LT KEF LL R+ G L R + QVW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVPDG 226 + T ID +KRLR KI + +QTV GVGY LEV + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEN 235 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 132/221 (59%), Gaps = 2/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL+VEDE YL L GF D+ +GL+G A+T +YDLI+LD+MLP+++G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R +PI+++TA G + V GL+ GA+DYL KPFA EL AR+R LLR Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLR-QRES 130 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + V L + +R+V I LT +EF LL + ++++ + + R I + VW Sbjct: 131 KANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGF 190 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F +TN +DV ++ LR KI++D KLI TVRG+GY L Sbjct: 191 DFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 10/233 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-----GDYD---LIILDI 52 M +L+VED+ + ++L +GL G+ V +A +G++G A + D +I+LD+ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP + G ++ + LR++ P+L+LTALG ++ RV GL GADDYLVKPF+F ELLAR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RTLLRRG--AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 LLRR + ++ +D + +V+R G + LT++E LLE FL G VL Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 R I S VW ++ D TN +DV V+RLR KID I TVRG+GY LE Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEP 233 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 135/227 (59%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+D++ + L+K L +VVD+A +G +G++ + +Y L+ILDIMLP +NG Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LRS N MP+LLLTA + E +V GL+ GADDYLVKP EL+AR+R LLRR A Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRR-A 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL ++ +++ + + LT KE+ L+E F+R V I +W Sbjct: 120 TISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDG 226 + + N + +K LR K+ D +PKLI+ V G+GY ++ D Sbjct: 180 SIEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSLDD 226 Score = 89.0 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 8 DEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLR 67 D+ + E L L G V + + + + DL+I+D+ +P NG D+ +++R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 SANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +PIL+LT E R + GADD++ KP EL+AR+ + L R Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 96/221 (43%), Positives = 141/221 (63%), Gaps = 1/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLP-DVNGW 60 + LI+ED+ Y+ +GL + G V + +G+ G +A+ +D+IILD MLP +G Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LRS K P+L+L+AL + RV+GL+ G DDYL KPFAF+EL AR+ L+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ADL ++L++R R+G + L +EF LL F ++H +++ R+++ VW Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D FD TN IDV + RLRGK+D FEP LI TVRGVGY L Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSL 251 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 126/232 (54%), Gaps = 13/232 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA----------MTGDYDLIILDI 52 +L++EDE E + L E G+ +A +G +L G+ LIILD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP +NG D+ R++R +PIL+++A G+ RV GLE+GADDYL KPF E+LAR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 RTLLRRG--AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 R LLRR + + DL + + T G + L+ KE+ LLE F+RH V Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 PR + QVW +F D+ +DV ++ LR KI+ + P+ I TVRG GY Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DE + + L GF V A G A DL+ILD+MLPD +G++ Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR+ + ++ LTA ++ GL G DDY+ KPFA EL+ARVR +LRR Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 VIIES-----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 E AD+ +D + V R+ + L+ EF+LL +FL + VL R+ I Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + VWD +FD + +D V LR K+ P LI T RG GY L Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHG-PPLIHTQRGFGYALR 246 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 125/219 (57%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 LL+VEDE ++ +GL E G+ V + G G A G DL++LDI LPD++G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR +PIL+LTAL +E RV+GL GADDYL KPFAF ELLAR+ LLRR Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L++D +R T G + LT EF LL F + G+ L R I +VW Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 +FD TN IDV V +R K+D I+TVRG+GY Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +++V+DE E L L AGF V+ A +G + DLI+LD+MLPD++G+ + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-A 121 R +R P+L LTA + +V GL +G DDY+ KPF+ E++AR+R +LRR Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 V + +V DL ++ S V+R+G I L+ E+ LL + + ++G VL ++ I VW Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 182 MNFDSDTNAIDVAVKRLRGKID----------NDFEPKLIQTVRGVGYMLEVP 224 ++ D ++ + LR K+D LI+T RG+GYM+ P Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAP 246 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE + L L F + A NG Y LAM +Y I+LD+MLP+++G + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 LR +K PI++LTA G +RV+G E GADDY+VKPF+ E++ RV+ LLRR + Sbjct: 65 ATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 123 IIE-------SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 +E + L +D + +V + LT KE+ LL + + +V R + Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEP--KLIQTVRGVGYMLEVPDG 226 +VW F D +D VKRLR K++ +IQTV GVGY EV Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSN 236 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVED+ LT LT + V++A +G + DYDLI+LD++LP ++G Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +RS N MPILL+T + + GL+ GADDYLVKPF EL+AR+R LLRR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRR-P 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 AV + L +D S + + + LT KEF LLE FLR+ V +I +W Sbjct: 120 AVTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 A+ +K LR K+ P L++TV G+GY L+ Sbjct: 180 SYEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKP 223 Score = 92.9 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 6/121 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+D+ + L L+ G +N L + D++ILD+ LP +NG + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 IVRMLRSAN--KGMPILLLTALGTIE--HRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + R++R+ + +PIL LT E ++V +GADD++ KP EL+ R+ L Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQV--FSIGADDFVSKPIVGPELVTRIVNRLE 514 Query: 118 R 118 R Sbjct: 515 R 515 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+LI+ED+ E + + +AG+ A +G G L + D IILDIMLP +NGW Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 ++ + +R ++ +PI++LT G +KGL +GADDY+VKPF EL+ARV+T+LRR Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + + Q ++++ + +V + + + KE L + + +VL R + +V Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W F+ D +DV +KR+R K+ I T+RGVGY E Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFE 227 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 136/221 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI+ED+ T YL +G D A +G G HLA YDLI+LD MLP ++G Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LRS+ P+L+L+AL ++ RVKGL G DDY+ KPFAFAELL RV L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ V L ++L++R VT + + L KEF LL++ + H +V+ R+L+ VW Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD TN IDV + +LR K + P++I+TVRG GY L Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + L LT + VDL ++G G+ + YDL++LDI LP ++G Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LRS N +PILLLTA + +VKGL+ GADDY+VKP AEL AR+R LLRR + Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S +++D + V+ +G + LT KE+ LLE + ++ I ++W Sbjct: 121 -EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 + N + +K LR K+ + I+TV G+GY L Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRL 221 Score = 107 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +++IV+D+ + + L G D+ + + DL++LDI +P +NG + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 IVRMLRS--ANKGMPILLLTALGT--IEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + +++R+ +G+P+L +TA I +V + GADDYL KPF +EL R+ L+ Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQV--FQAGADDYLTKPFTGSELATRIVNRLK 614 Query: 118 RGAAVIIESQFQV 130 R + + F Sbjct: 615 RTQNLATRTDFAY 627 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL++EDE L +GL + G+ VD A +G G LA +YDLIILD+ LP ++G Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+ R LR+ + IL+LTA E RV GL+ GADDYL+KPF F ELLAR+R LLRR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRR-D 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q DL +D ++ V + R+ LT KEF +L + +RHQGEV+ + ++ VW Sbjct: 120 LRVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 D + TN + V + LR K+ + P + I+TV GVGY L Sbjct: 180 DGTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D+ LT L ++VD +G G+ A T DYDL++LD MLP ++G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR G+PILLLT ++++GLE GADDY+VKPF ELLAR+R LLRR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRT- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E +L +D +S +V SG +TLT+KE++LLE FLR +V +++ ++W Sbjct: 120 PHETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 + ++RLR K+ P LI+TV G+GY L+ Sbjct: 180 SSQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 84.8 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 10/128 (7%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + + + L F + N + L DL++ D+ +P +NG++ Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 IVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKP-----FAFAELLARVR- 113 + R+LRS K +PI+ L+ G + + +GADDY+ KP FA LL R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -TLLRRGA 120 +RR A Sbjct: 629 TADIRRPA 636 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 111/221 (50%), Positives = 161/221 (72%), Gaps = 3/221 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED ++T E++T+GL+EAG+V+D +G +G +LA+ DY LIILDIMLP ++GW Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR+A P++ LTA +++ RV+GL+ GA+DYLVKPF+F+ELLARVR LR Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--Q 117 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S +++ L +D VS V+R ITLT KEF LL GE++PR++IAS++W Sbjct: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +NFDSDTN +DVA++RLR K+D+ F KLI T+RG+GY Sbjct: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+++ G +LTKGL E G+ V+ A +G L G +DL ILD+MLPD++G+ Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +++R P+L+L+ALG + ++K L+LGADDYL KP F ELL+R+ L RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 AV-IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ ADL V+L + V R+G I L++KEF L + + +Q +VL RS I V Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W N D+ TN +DV + LR KID DF KLI+TV+G GYM+ Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMI 222 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ +D+ KT + L LT GF V A +G LA++ DL+ILD+M+P V+G+ Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + +R+A+ +PILLLTA G +V G LGADDY+ KPF EL+ RV +LRR Sbjct: 66 VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L ++ +R V LT +EF LL H G R + ++VW Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 182 MNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDGQ 227 + +D + + V ++RLR KI DN +P+ I+TV G+GY + + Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 128/221 (57%), Gaps = 9/221 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE+ +L LT + VD +G +G A++ YDLIILD+MLP +NG + Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R + PI+++TA +V GL+ GADDY+VKPF ELLAR+R +LRR Sbjct: 63 ICRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQ 121 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 I + V+ KVT +G I LT E+ LL ++ V+ R I + VW Sbjct: 122 KDI--------IDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG 173 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 N + +TN +DV ++ LR K+ K+I+TVRGVGY++ Sbjct: 174 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 2/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L +ED++ T + L GF VD NG +G A++ DYD+I LD MLP V+G Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ +RS P+L+L+ALG ++ RV+GL G DDYL KPF E+ AR+ LLRR A Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 VII--ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 E+ V L +DL+SRKV R G I L E+ +LEF +RH G+ + R ++ V Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W +FD TN IDV + RLR KID +I+TVRG GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 136/222 (61%), Gaps = 6/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ L L E + VD A +G G+ A+ +YD+I+LD+MLP ++GW Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + ++ LR P+L+LTA ++ RVKGL GADDYL KPF ELLAR+R L+RR A Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +D +RKV G + +T++E+TL+E+ HQGEV+ R+ + ++ Sbjct: 131 GQP-QPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLF 189 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D + + +N +DV V LR K+ P+LI T RG GY +E Sbjct: 190 DEDDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ K + + + L GF V A+ G +G ++G +D++I+D MLP+++G Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR P+L+L+AL ++ RV GL+ G DDYL KPFA EL AR+ L+RR Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ V L +DL+ R VTR G I L +EF LLE+ +R +VL R+++ VW+ Sbjct: 156 T-RETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWN 214 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 F TN +DV + +LR KID+ LIQ++RG G+ML VP+ Sbjct: 215 YRFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRVPE 258 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+DE + + L + LT G++VD+ NG +G LA T YDL+ILD MLP+ G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I + LR K +P+L LTA T++ RV+GL+ G DDYLVKPF ELLARVR LLRR + Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + I + V DL +D+ ++ R G I L+ KE LL++F+ + ++L I Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +W ++N I ++ LR KI+ E LI TV G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 136/226 (60%), Gaps = 7/226 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE + ++ KGL GFV +A + LA+ G +DL+ILD+ LP +G Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR + +PI++LTA I ++ E GADDYL KPF F ELL RV+ LR Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 VI---IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 V ES + ++++DL +RKV + L+++EFTL E F RH G+VL R + + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW ++D +N +DV V LR K+ N +LI+TVRG+GY L++P Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN----ELIETVRGMGYRLKLP 224 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGW 60 ++LIVED+ + + L+ G + +G L + +DL++LD+MLP ++G Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 DIVRMLRSAN---KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + R LR ++ + +P+++LTA V GLE+GADDY+ KPF+ +L +RVR LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RG----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 R A + + + L +DL+ R+VT G ++ LT++EF +L + G V R Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 I +W F + + DV ++ LR KI+ D + P+ IQTVRG+GY Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D+ + L + L + +VVD+A +G + YD IILD+ LPD+ G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR PIL+LTA + +VK L GADDY+VKPF F EL AR+R L RR Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q DL VD + +V + +T KE+T+LE FLRH +V I +W Sbjct: 147 NTLA-AVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLW 205 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYMLEV 223 +A+ VK LR K+ PK IQTV G+GY L+ Sbjct: 206 SFEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKA 249 Score = 81.3 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++ ++D+ + L L+ GF +N + + DL+++D+ +P+ NG + Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 I R+LR+ + +PIL L+ + + +GADD++ K EL R+ L+R Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 AAVII 124 + Sbjct: 633 GRAVP 637 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ ED+ K +L KGL EAG+ VDLA +G LA +YD I DIM+P +G Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR K P +LLTA +E RV+GL+ GADDYL KPF+ ELLAR+R +LRR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + V+DL +DLVS R I+LT++EF+LLE + + +S I +VW Sbjct: 121 PEM-NNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D ++D+ TN + V +K LR KID + EP LIQT RG+GY + Sbjct: 180 DQSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIRD 222 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 122/224 (54%), Gaps = 1/224 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED++ + L K L G+ V LA +G L LIILD+MLP ++G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LRS N PI++LTA G +V GL LGADDYL KPF ELLAR+ +LRR Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 V DL +D V ++ ++ L+S+EF +LE R G+ + R I +VW Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 183 NFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPD 225 + ID + RLR K+ DN EP+ I TV G GY VP+ Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +++V+DE E L L AGF V+ A +G + + +LI++D+MLPD++G+ + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R +P+L LTA + ++ GL +G DDY+ KPF+ E++AR+R +LRR Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 IIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ +VADL ++ S VTR G I L+ E+ LL + + ++G VL +S I + VW Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 182 MNFDSDTNAIDVAVKRLRGKID-----NDFEPK-----LIQTVRGVGYMLEVP 224 ++ D ++ + LR KID +D + LI+T RG+GYM+ P Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREP 241 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++EDE ++ L+ F + +A +G G LA+ ++D+I+LD+MLP ++G Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + + +RS K PI++LTA +I RV GL+ GADDY+ KPFA ELLAR+R + RR Sbjct: 89 VCQKIRSVKK-TPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + L+V + R VT++ + LT +E+ LL F+++ VLPR ++ V Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W +TN +DV V+ LR KID E I TVRG+GY++ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMR 250 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 134/224 (59%), Positives = 166/224 (74%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE+KTG YL +GL E G+ DL +NG +G A G YDLIILD+MLP ++GW Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LR + P+L LTA + +VKGLELGADDYL+KPF F EL+ARVRTLLRR + Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + +AD+ VD+V R V RSG +I LT KE+ LLE L+ GEVLPRSLI+S VW+ Sbjct: 123 QAA-TVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 MNFDSDTN IDVAV+RLR KID+DFEPKLI TVRG GY+LE+ + Sbjct: 182 MNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIRE 225 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ T LT+ L+ + VD+A +G +G LA T +YDL +LD+++P ++G Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LRS PI+LLTA + ++ GL+ GADDY++KP L+AR+R LLRR Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRR-K 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S + +L ++L + +V I LT+KE+ LLE FL + + R +I ++W Sbjct: 120 NASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 D+ + +K LR K+ N I+TV G+GY L D Sbjct: 180 DIGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRKAD 224 Score = 66.7 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 26 VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLTALGT 83 V N + + T +L++LD+ +P NG ++ +++R +PIL L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 IEHRVKGLELGADDYLVK 101 E + GADDY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 63.6 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 +L+++D+ E + +++A + + + +IILD+ +G+ Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP 102 ++ L + +PI++ T ++ R+K LGA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 1 MK-LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNG 59 MK +L+V+DE L L + F V A +G +A+ +D IILD+MLP ++G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + + +R A PI++LTA ++ GLE+GADDY+ KPF+ E++AR+R + RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 AAVIIESQ------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 I + V DL VD + ++ LT KEF LL +F+ +V R Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVP 224 + + VW ++ ++T +D+ V LR KI DN P ++TVRG GY LE P Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDP 232 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+ ++ L + VD+ +G G A++ YDLI+LD+MLP++NG + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R N+ PI+++TA +V GL+ GADDY+VKPF ELLAR+R +LRR Sbjct: 63 ICRQIRQ-NQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQPQ 121 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + ++D + KVT G + LT E+ LL + ++ VL R I + VW Sbjct: 122 KNLIDIKGI---IIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG 178 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + +TN +DV ++ LR K+ + K I+TVRGVGY++ Sbjct: 179 YDTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVVR 219 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L V+D+ K + L L + GF V A +G A DL+ILD+M+P ++G++ Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--G 119 + L++ +PI++L+A RV G +G DDY KPF+ EL RV+ +LRR Sbjct: 64 TYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V +E+ + +L +D R V + +++ LT K+F LL + V ++ + ++ Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLE 222 WD +F D N + V ++RLR K++ + P+ I+TV G+GY E Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 8/234 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+D+ E ++ L G+ V A + + D+ I+DIMLP ++G++ Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 IVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR- 118 +VR LR + P++ L+A G +V GLELGADDY+ KPF+ E++AR++ + RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + L +D+ +V +++LT EF LL F ++G+V R + Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPDGQ 227 + ++W ++ DT +DV ++RLR KI+ D PK I TVRG GY P + Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 262 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ + L LT+AG VD+ +G +G A+T YDLI+LDIMLP +G+D Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 I R LR PIL++TA +V GLELGADDY+ KPF+ E+LARV+ L RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 ++ ++ ++V+ RKVT G + LTSKEF LL F RH G R + Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 +VW + ++ ++ + RLR KI+ D EP+ ++TV GVGY Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE + L +GLT+ G V LA +G G LA + +D I+LD+ LPD++G+ Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 ++ LR MPI+++TA I R++GL+ GADDYL KPFAF ELLAR+ + RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 G V + + V DL D + +TR+GT + LT KE +L + G V+ R+ I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW M D TN ++V + RLR K+ P +++ VRG GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALG-PPVVENVRGFGYRL 225 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + E L L + VD+ +G G A +G YD +LD+MLP +G+ Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR +PIL+LTA G I +V+GL+ GADDY+ KPFA ELLAR+R+L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +V E+ D+ +DL + ++ G RI L+ KEF ++ + V + + S+VW Sbjct: 121 SVEFET-LSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + N ++ V LR K+ I T+RG GY L Sbjct: 180 GYDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 134/230 (58%), Gaps = 9/230 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG-DYDLIILDIMLPDVN- 58 MK+LI+ED+ + + + + L EAG+ +A + +G YDL++LD+MLP ++ Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 G + R +R + +PIL+LTAL + +V+GL+ GADDYLVKPF ELLARV Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 RTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 R LLRR V + +D +R R G RI LT+KEF +LE+ +R+ G ++ Sbjct: 121 RALLRRSPQAQA-PVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSS 179 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + WD N++ +N + ++ LR K+ EP +I+T RG GY++E Sbjct: 180 TELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE K ++ L G++VD +G G A+ G YDLIILD+MLP +NG + Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R LR + +P+++LTA I +V GL++GA+DY+ KPFA ELLAR+R + + + Sbjct: 65 VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 VIIESQFQ--VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ L +D+ VT + I LT KEF LL++ + ++ L R I +V Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W ++ DTN +DV ++ LR KID+ F K I T+RG+GY Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFR 226 >UniRef50_C3QD36 Two-component system response regulator n=8 Tax=Bacteroides RepID=C3QD36_9BACE Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 142/221 (64%), Gaps = 2/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+EDE + L GL E G+ +A +GL G L T +DL+I DI+LP ++G+++ Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--GA 120 + +R N +PIL+LTALG+ ++ G + GADDY+VKPF F EL AR++ LL+R G Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + + ADL +DL + V R+G I L+ KE+ LL + + + VL R IA +VW Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + +FD+ TN IDV + LR KID DFEPKLI T G+G++L Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFIL 224 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 8/231 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+++V+DEK + L L + G+ V A +G + L + D+++LDIMLP +G + Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R MPI++LTA + +V GLELGADDY+ KPF+ EL+ARV+ LRR + Sbjct: 64 VCREVRKK-YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 VIIE------SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ + D+++ + + + G I LT +EF L + +H G+V+ R + Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPD 225 VW ++ D +DV ++RLR KI++D P+ I T RGVGY L+ + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 233 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + +L +GL G+ + A +G G LA GD+ LI+LDIMLP +NG Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + LR +PI++LTA+ + +KGL LGADDY+ KPFA+ ELLAR+ + RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 AVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 I + + L D S V+ I+LT KE +LE + + G+ L R I S V Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 W M D TN +DV + +LR K+ + + + +I+T RG+GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 141/225 (62%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VED+++ +L KGL+EAG+ + LAD+G L T D+D+I++DIMLP ++G Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + +++R PIL+L+AL + + ++K L++GADDYL KPF F EL++R++ L RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + ++ +D KVT++ I + E+ L F + ++ +VL R+ I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW ++FD+ TN +DV + +R KID E K+I TV+G GY+++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDE-TEQKIIHTVKGTGYLIKD 224 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+D+ E ++ L + F + +G +LI+LD+MLP ++G++ Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R + +PI++L+A G I +V GLELGADDY++KPF EL+ARV+ +LRR Sbjct: 66 VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 122 VIIESQ----------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 S+ DL+++ + VT G I + KE L F H +V Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 R + +W + DT +DV +KRLR KI + +L TV G+GY EV Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEV 235 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ ED+ LT L G+ V+ +G + AM YDLI+LD+MLP +G+D Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + + LR + G+PIL+LTA G + +V GL+ GADDYL KPF ELLAR+ LLRR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + FQ+ + VD +VTR+G +TL+++E+ LL + + H GE + R + +QV Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPD 225 W + +DT +DV V LR K+ +N P+ +QTVRG+GY L + Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE L L +A F V A NG + + YD+++LD+MLP+++G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +++ +R P+++LTA T +V GLE+GADDY+ KPF+ E++AR+ +LRR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 VIIESQ-----FQVADLM------VDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 +Q + D+ +D KV+ + + LT KEF L+++ + H+ +VL Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 R + VW ++ + +D+ + LR KI+ + PK ++T+RG GY Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL+V+DE+ LT L G+ V A G D DLI+LD+ LPD+ G++ Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR +P+L LT LG ++ RV+GL++G DD++ KPF E+ ARVR LLRR Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 ---VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + + +D + +V + + LT+ EF LL + + + G VL R I + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW+ + + +D + LR K+ + LI+TVRGVGY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQ-SLIRTVRGVGYQL 248 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ E + + L AGF VD A +G +A T DL++LD+MLP ++G + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR+ ++ +P+++LTA R+ GLE+GADDY+ KPF+ EL RV+++LRR Sbjct: 117 VFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 122 VIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + + L+VD +R TR G + LT +EF LL F LR G R + Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYM 220 VW ++ D + + V ++RLR KI++D P+++ TV GVGY Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI+EDE L L G+ V A +G G M DL++LD+M+P ++G+ Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR +PIL+LTA G IE RV GL+ GADDYLVKPF+ ELLARVR +LRR Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 VIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + ++ +D+V + R + T+KE+ +L GE + R VW Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 T +D + LR KI++D E P+ I+TV GVGY LE Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED++ + + L ++V++A + G +DL+ILD+ LP ++G Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R +PIL+LTA T +V GL+ GADDY+VKPF ELLARVR LLRR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRR-K 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L++D KVT + + LT KE+ +LE LRH +L RS I W Sbjct: 120 PLPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 ++ + V ++ LR K+ P LI+TV G GY L Sbjct: 180 PLDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRL 221 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 131/226 (57%), Gaps = 2/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+VEDE ++T L AG+ V A++G + L DL++LD+MLP ++G Sbjct: 6 VKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + +R I++LTA G ++ GLELGADDY+VKPF EL+AR++ +LRR Sbjct: 66 EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125 Query: 121 AVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + L +D + K+ ++ + LT E++LL+ F+ + G+ L R + + + Sbjct: 126 RYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGI 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVP 224 W ++ DT +DV ++RLR KI DN +P+ I+T+ G GY + Sbjct: 186 WGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ GE + L G+ VD +G + H ++L+ILD+ LP ++G Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ LR+A +P+L+LTA R+ GL+ GADDYLVKPF AEL AR+R LLRR Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + +++D V+++V+ GT I L KEF LL L G VL R + ++ Sbjct: 136 NRP-EPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLY 194 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + D ++NA++V + LR K F P+LI+TVRGVGY+++ Sbjct: 195 GWDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 232 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 9/232 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVED+++ + + + L F + ++G G + DLI+LD+MLP ++G ++ Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 VRMLRSA-NKGMP-ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 +R P IL+LTA G R+ GL GADDYLVKPF+ EL+ARVR LLRR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTR----SGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + ++ VDL + +R + LT EF LL F+ + G V R+ Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPD 225 + ++W +F D +D ++RLR KI+ D P I+TV G+GY E PD Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 144/221 (65%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE++ G+++ K LTE + L + +D ++LD+ LPD +G Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R R++ P+L+L+A + RV+GL +GADDYL KPF+ E++ARVR+LLRR A Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + + +DL+ R VT +G + LTS+E+ LLE FL++ VL R+LIA +VW Sbjct: 165 GVKT-TVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVW 223 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + ++D +TN IDV V+RLR K++ +P LI+T+RG GY L Sbjct: 224 EASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 131/236 (55%), Gaps = 12/236 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE L L G+ V A +G G DL++LD+++P ++G Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR+A+ +P+L+LTA RV GL+ GADDYL KPF ELLARVR LLRRGA Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALT 135 Query: 123 ------------IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + + DL +D ++R+VTR+G I LT E+ LLE FL H + L Sbjct: 136 GEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQAL 195 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 R I VW +F+ +N++DV V +R K + D P+L+QTVRGVGY L G Sbjct: 196 TREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYALRTASG 251 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+VED + + L +G+ E GF VD+A +G + YD+++LD+MLP V+G ++ Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 RMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP-FAFAELLARVRTLLRRGAAV 122 + R++ +L+LTA +V GL+ GADDYL K EL AR+R L+RRG Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + + DL +D +R V R+G I LT +E+ LLEF H+G+V+ RS+I ++D Sbjct: 122 -KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 ++ +N +DV ++ LR K+D +F+P+LI T G GYML D Sbjct: 181 YDENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLRGEDD 224 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 9/233 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD-YDLIILDIMLPDVNG 59 +++L+V+DE E L L G+ V++A +G +G A + DLI+LD LPD +G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 DI + +RS+ PIL+LT I RVK L+ G DDYLVKPF+ EL+AR+R + RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 AAVIIESQ--------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 +Q V L ++ +R V RSG +I L+ KE+ LL F +R G+VL Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 RS I VW +F D N +DV ++ LR K++N P LI TVRGVG++L Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFILRDE 244 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 298 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 139/223 (62%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K LIVED++ E L KG GF VD+A +G A T YD+IILD+++P ++G Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + +PI++LTA +E +++GLE GADDY+ KPF+F EL+ RV+T+LRR Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 V E + + DL +DL KV G I LT KEF LL+ ++ + + R ++ ++VW Sbjct: 123 VQ-EEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWG 181 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + D D+N +DV +K +R K++ D PKLI T+RG GYML Sbjct: 182 IASDYDSNIVDVYIKNIRNKLE-DKPPKLILTIRGRGYMLSTE 223 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 133/225 (59%), Gaps = 6/225 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE+ + L L + GF + +G + D+++LD+MLP ++G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LR+ + +P++++TA + +V GLELGADDY+ KP++ EL+AR+R +LRRGA Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 IIES----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + +D+ V+ +G ITL KEF LLE+ +R+ G VL R + + Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 VW ++ DT +DV VKRLR KI+ D P + TVRG+GY LE Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE L AG+ V A G G +A+ + DLI+LD+MLP ++G +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 LR + + IL+LTA RV GL +GADDYL KPF+ EL+ARV +LRR Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 I-IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 S + + +D +R+ +G + LT EF LL R+ VL R + +VW Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +F +DV V ++R KI+ LI+T RGVGY Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 130/234 (55%), Gaps = 8/234 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL++EDE L+ LT G+ V + D+G GY A+ D+DLI+LD+MLP +NG++ Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LRS P+++LTA E V+GL+ GADDY+ KPF AELLARV +LRR Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 --------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 SQ + L + +VT +G ITL KEF +L + R G V+ R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + + VW ++ +DV V LR K++ D + I ++RGVGY L V Q Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKKQ 237 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE+ + L A F A+NG + D+I++D+M+P ++G+ + Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-AA 121 +R + +PIL LTA G +VKGL+LG DDY+VKPF+ EL+AR+ ++RR Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 L++D RKVT G + LT KEF LL F +H G+V R + +QVW Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++ + +D +K LR K+ + IQTV G+GY EV Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQASD--FIQTVWGIGYKFEV 224 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 135/221 (61%), Gaps = 5/221 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDEK L + L +GFV DL +G L T YD IILD+ LP +G Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ RS P+L+LTA G + +++GL GADDYL KPF AEL+ARV+ L+RR A Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S ++ + +D+ + +V GT I LT+ EF +L + ++H+G+V+ RS + ++ Sbjct: 121 GN-ASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD D+N ++V + R+R K D LI+TVRG+GY + Sbjct: 180 AQDFDRDSNTVEVFIGRIRKKTHAD----LIETVRGLGYRI 216 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 6/229 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVED+ + L+ L + + V + +G G L G++D +ILD+MLP V+G + Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R R+ + PI++ +A + HR+ GLELGADDYL KPF+ EL+ARV+ LLRR A Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 VIIES-----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 + +S VA L +D ++R+ + G R+ LT +EF LL FF RH G+V R + Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 + VW + + ++ + RLR KI+ D EP I TV G GY L P Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAP 234 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED E + + L + F VD A NG +G LA+ YD I+LD+M+P ++G+ Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ +R P+L LTA ++E RVKGL+ G DDY+VKPF EL AR+R LLRR Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + + + + V G + L+ K++ LLE+ +++ G++L R I +VW Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + D+ ++V V LR K++ K IQTVRG+GY+L+ Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILK 230 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI++DEK + L K + GF V +A +G + +G +D IILD+MLP ++G Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + +R + + I++LTA ++ GLELGADDY+ KPF EL+AR+RTL+RR Sbjct: 77 TLCNRIRQQS-DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + ++Q DLMVD+ SR V R I LT KEF +L +R++G V R I V Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLE 222 W DT IDV VK LR K+ + + +I+T GVGY Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFR 238 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ LT L AG+ V AD G A G DLI+LD+ LPD++G+ + Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG--- 119 R LR+ P+L LTA +E R+ GL G DDY+ KPF E+L R+R +LRR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + DL +D + +V R+G I L+ EF LL L V+ + I S+ Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW +F D +D V+ LR KID FEP+LIQTVRGVGY L Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDR-FEPQLIQTVRGVGYCL 236 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VED+ K G + L++ V+ + YDL ILD M+ +G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +R++N PIL+LTA I+ RV GL GADDYL+KPFAF EL AR+ L RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ E + A + +D ++ +V R G +TLT KEF LL+FFLRH +VL R I + V Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W ++ NA+D A+K LR K+D F KLI VRGVGY L Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DEKK + L L + F +++A +G + DLIILD+MLP+++G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R +K PIL+LTA GT E +V G GADDYLVKPF+ ELLAR++ +LRR Sbjct: 64 VCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 VIIESQF---QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +++ Q L + KV +G LT EF +L +R+ G+V R +A + Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 V + + ID +K +R K+ N + +LI TV GVGY E Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFE 225 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE +T L +A + V DNGL+ + G D +I+D+MLP ++G + Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + +R ++ +PI++LTA + ++ GLELGADDY+ KPF+ ELL+R++ +LRR Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 123 II----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 I + Q ++ +D V ++ +I LT EF LL + ++ +VL R I + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 VW + T +D+ + LR K++ND P+LI+T+RG GY Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L++EDE L+ LT+ G+ + D+G G A+ ++DLIILDIMLP +NG++ Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LR PI++LTA E V+GL+ GADDY+ KPF AELLARV +LRR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 ------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 E V DL + +V +G + L KEF +L + ++ G V+ R + Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + VW ++ +DV V LR K++ + I+++RGVGY L Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLEL-GQSVQIESIRGVGYKL 228 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 138/224 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + ++ KG + G++ +++ +G +G T +D ++D+MLP ++G Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +R + I++L+A ++E +V+ L GADDYL KPFA +ELLARV ++RR + Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + A + +DL++ R G RI L +EF LLE +R++G L + + ++W Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D +FD TN +DV V RLR K+D F+ KLI T+RG+GY+ Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVFRPE 230 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 140/236 (59%), Gaps = 12/236 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+VEDE+K ++ L G+ V A NG +A++GD+ LI+LDIMLP +NG + Sbjct: 10 HILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLE 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL----- 116 ++R L K P++LLTA + +V GL+ GA DY+ KPFA ELLAR+R L Sbjct: 70 VLRRL-QQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128 Query: 117 -RRGAAVIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 RR A E ++ L + +VT GT I LT++EF +L+ L +Q VL R Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML--EVPDG 226 ++ ++V ++ +TN +DV ++ LR KID F+ K+IQTVRGVGY++ E PD Sbjct: 189 EVLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVIKSEAPDA 244 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVED+ + + L L E G+ D+ +G +G A GDYD+IILD+MLP ++G+ Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V LR + +P+LLLTA + ++ GL+ GADDY+ KPFA AELLA +R L RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V+ E + DL+++L S + I L+ KEF+L + + + G+V+ + ++ ++VW Sbjct: 121 EVLFE-KLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + ++ N ++ V LR K+ I+T+R GY Sbjct: 180 GVESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 9/230 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+V+DE+ + + L GF + + NG + + + +L ILD+MLPD++G+ Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 + + +R N P+++LTA ++ GL LGADDY+ KPF EL+ARV+ LRR Sbjct: 63 TLCQRIRE-NHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 E + L++D+ + + T + +I+LT KEF++L ++G V+ Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 175 IASQVWDMNFDSDT-NAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 + +VW + +++ N + V ++ LR K+ + PK I+TV GVGY +E Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVED+ + + L + G+ ++ A +GL +Y ++I+DIM+P ++G + Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 +R +R +K +PI++L+A G ++ GL +GADDY+VKPF+ EL+ARV+ +RR Sbjct: 65 SMRRIREKSK-VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 ++ ++ D+ D+ + VT+ G +TLT+KE +L+ F + V + I Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 VW F SD N + V ++RLR KI++D PKLI+TV G+GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE E + L + GF A++ + + DLI+LD MLP +G Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 ++ L+ + + +P+++LTA G E RV+GLE GADDY+ KPF+ EL+AR++ ++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +E ++ L +D S +V + + EF LL FF+ H V R + + V Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W N + +DV ++RLR ++ +++QTVRG GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M LLIVED+++ L KGL + D++ +G +G + YD +ILDI LP ++G Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +R P+L+LTA + RV GL+ GADDYL KPF F EL AR+ L+RR Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ ++ DL +D ++ V ITLT++E+ +LE + ++ I VW Sbjct: 121 NKP-SNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N + +N I V + LR KI LI+T++G GY L Sbjct: 180 GDNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 107/229 (46%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD----YDLIILDIMLPDV 57 ++L+VED+ T L GL GF V A NG DL+ILD MLP + Sbjct: 5 RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64 Query: 58 NGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 +G ++R LR+ + MP+LLLTA I+ RV+GLE GADDYL KPFAFAELLARVR LLR Sbjct: 65 DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124 Query: 118 RGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 R Q VADL ++L +R VTR+G I LT +EF LL + HQGE + R +A Sbjct: 125 RFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAR 184 Query: 178 QVWDMN--FDSDTNAIDVAVKRLRGKIDN--DFEPKLIQTVRGVGYMLE 222 ++W N N IDV + RLR KID KL+ T+RG+GYML Sbjct: 185 EIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYMLR 233 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 5/224 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE+ + L L + GF + +G D+++LD+MLP ++G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-- 120 + LR+ + +P++++TA + +V GLELGADDY+ KP++ EL+AR+R +LRRG Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + + + + +D+ V+ +G ITL KEF LLE+ +R+ G VL R + +V Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 W ++ DT +DV VKRLR KI+ D P + TVRG+GY LE Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 12/233 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM---TGDYDLIILDIMLPDVNG 59 +++VEDE++ + + L E G V++ +G + DLI+LD+MLP+V+G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR- 118 +I R +R + PIL+LTA T RV GLELGADDYL KPF+ EL ARV +LRR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 ------GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 ++ DL +D +SR+VT G + LT+KEF LL + G V R Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVP 224 + +VW ++ +D + RLR K+ P + I T+ GVGY E P Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYERP 235 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 117/223 (52%), Gaps = 1/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ E + + L AG A +G LA+ DL++LD MLP V+G + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R P+L+LTA +HRV+ L GADDYL KPF+ EL+ARV+ LLRR A Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 L+VD +R+V G I L ++EF LL H G V R + +VW Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 +F+ IDV V++LR K++ D P + TV GVGY P Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 97/223 (43%), Positives = 142/223 (63%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ G + +KGL AG VVD +NG A T DYD+++ D M+PD++G Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +R LR A P++LLTALG +E RV+GLE GADDYL KPFA +ELLAR+ L RRG Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 AV--IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ L +DL+S+ T GT + L KEF LLE +R +G + R+++ + Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VWD+NF+ T+ ++ + RLR KI+ F+ + I+T+RG GYM Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMF 223 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ L+ L G+ V A +G G A+ DL++LD+MLP++NG+++ Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR---G 119 ++ LR + P+++L+A G ++ GL LGADDY+VKPF ELLAR++ +LRR Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 A D+ VD+ +R V R+ T + LT++EF LL FL H G R + S Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 W +++ +D +++LR K + D E P+ TVRG+GY E Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_C8W041 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W041_DESAS Length = 384 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+D++ +Y++ GL G+ V A G + L D +ILD MLPD+ G D+ Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR + I+++T RV GL GADDY+VKPF FAELLAR+ LRR + Sbjct: 226 CRRLRELINPV-IIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTSS 284 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + AD+ + R+ R + LT EF LL F+RH +VLP+ +I Q+W Sbjct: 285 PEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWGH 344 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 NF D N ++V + LR K+ P LI TVRGVGY+ E Sbjct: 345 NFTGDLNIVEVYIGYLRRKLQK---PSLIHTVRGVGYLFE 381 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ + L + L A + +D+A +G G + + YD I+DI LP ++G Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR PIL+LTA + + +V GL+ GADDYL KPF ELLAR++ L+RR A Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S V+L S +V R + L+S E+ L EF + H GEV +S++ ++ Sbjct: 121 GK-ASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD D+N I+V ++RLR K+D D + +LI+T+RG GY L Sbjct: 180 DQDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 3/220 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 + +L+V+DE+ E++ GL + GF++ A +G LA + +IILDIMLP +NG+ Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ ++ I++LTA I+ RVKGL+LGADDY++KPF+F ELLAR+ LR Sbjct: 208 EVCSEIKKWVNAS-IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + + ++ + ++ + L+ E+ LL++ L + G VL + I +VW Sbjct: 267 PELND-VMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVW 325 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 +F+ D N ++V ++ LR KI D E +I+TVRGVGY Sbjct: 326 GFDFNGDVNIVEVYIRYLRDKIG-DNEHSIIRTVRGVGYK 364 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ E L L G+ +G D+++LD+MLP NG Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + +R+ + +PI++LTA G V+GLE GADDY+ KPF EL+ARVR LRRG Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ + D+ +D+ + +VTR G I LT EF LL R +V R L+ QVW Sbjct: 136 GQAEN-LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG 194 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 +DT ++V V+RLR KI+ D E P+++ TVRGVGY P Sbjct: 195 YRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYKAGPP 238 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 133/223 (59%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE E L++ L + + VDL +G +G A++ YDLI+LDIMLP ++G Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R P++LLTA G I +V GL+ GADDYL KPFA ELLAR+R + RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 VI++ + D+ ++ + K+++ + LT KE LL F + + LI ++W Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + D + N ++V + LR K+ +I T+RGVGY+LEV Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEV 223 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+ +VEDE+ L L GF VD G DL+ILD MLP V+G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63 Query: 62 IVRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R LR + +PI++LTA G RV+GL GADDY+VKPF+ EL+ARV+ +LRR Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ + + D+ +D + +V R + L EF LLEF + G V RS + V Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W + D +DV V RLR ++ P +I+TVRG GY LE Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D++K L +GL E G+ V+ A + + L+ILD MLP +G Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR PIL+LTA I R+ GL+ GADDYL KPF F ELLA VR LLRR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRV- 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + DL++D +R VTR+G R+ LT KE+ +L + H GE++ R+ +A +W Sbjct: 119 ELAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + N IDV +K LR K+D LIQTVRG G+ + Sbjct: 179 HADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRI 219 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE + L L+ G+ V A +G +L D++ILDIM+P ++G+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTALG + R+ GLELGADDY+VKPF+ EL AR+R +LRR Sbjct: 76 VCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134 Query: 122 VIIESQFQVAD------LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 S + L +DL R++ + RI LT EF+LLE + G+ R+ I Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 176 ASQVWDMNFD--SDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLE 222 +VW + DT +DV + RLR K++ + P LI T RG GY+ + Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ E + L AGF+V+ A +G A DLI+LD MLP ++G + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-A 120 + R +RS +PI+LLTA+G+ + R+ GLE GADDY+ KPF+ EL+ RV+++LRR Sbjct: 101 VCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E+ F + + +D + + R+G + LT++EF LL F L+H G+ R + VW Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 F D + + V V+RLR KI+ D P ++ TV GVGY L Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+ L G+ V A++G G LA+ LI+LD+MLP VNG++I Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR MPI++LTA G V GL+LGADDY+ KPF+ ELLARV LRR Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + + D D +R + R+G + L+ KEF LL F + + G L R I S VW Sbjct: 127 -TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGY 185 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 + +ID V LR KI+ D EP++++TVR GY E+P Sbjct: 186 DSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFELP 228 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 2/220 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWD 61 +++VED+ + L A F V G +A L+++D+MLPD++G++ Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + L++ +P+L L+A G ++ R++GL GADDYL KPF+ EL+AR+R +LRR Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + S L +D +R+VT G I L+ E+ LL F LR+ G + R+ I VWD Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 FD ++ ++ + LR K+D P LI TVRGVGY L Sbjct: 207 YGFDGESTVVETFISSLRKKVDT-APPTLIHTVRGVGYRL 245 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 97/218 (44%), Positives = 136/218 (62%), Gaps = 1/218 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+ ED+ + + +T+GL E FVVD +G + +A+ YD +ILDI++P ++G Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I R LR+ +PILLLTA ++ R++GL+ GADDYL KPF F EL ARVR LLRR + Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V++ S V DL +D ++ R G + LT++EFTLL + RH G ++ R +A VW Sbjct: 121 -VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVG 218 D N D + N IDV V RLR K+D L+ T RG G Sbjct: 180 DENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQG 217 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +++V+DEK+ + + L G+ V A+NG+ L DLIILDIM+P+++G + Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR---- 118 +R MPI++L+A ++ GL GADDY+ KPF EL+ARV++ LRR Sbjct: 66 CTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 I + ++ +L ++ + +V ++ LT +EF +LE R++G V I Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 +VW F N + V +++LR KI +N +PK ++TV GVGY +E Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + E + L V A +GL DL++LD+M+P ++GW Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 ++ +R + +P+++LTA G + RV+GL +GADDY+ KPF EL ARV+ +LRR A Sbjct: 68 LQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 123 IIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + + L + R +G + LT KEF LL H G+V R + ++W Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML-EVPDGQ 227 +F D +D +K LR K+ LI TV GVGY EVPD Q Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRFAEVPDAQ 231 >UniRef50_Q1R1E2 Two component heavy metal response transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=Q1R1E2_CHRSD Length = 223 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 130/223 (58%), Positives = 175/223 (78%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE KT +YL +GL EAG+ V++A +GL+G HL D++LIILD+MLP ++GW Sbjct: 1 MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R++R +P+L LTA +E+RVKGLELGADDYLVKPF+F ELLARVRTLLRRG Sbjct: 61 ELLRLIRRHG-QVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRG- 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +FQVADL +D++ R+VTR TR+ LT+KEF LL+ L +GEVL R+LIAS+VW Sbjct: 119 PLRERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 MNFDSDTN ++VAV+RLR K+D+ F +LI T RG+GY+LE Sbjct: 179 GMNFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLED 221 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 125/229 (54%), Gaps = 2/229 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++L+VEDE+ + + LT F V A + L DL++LD MLPD +G Sbjct: 21 VQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGL 80 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + + LR+ + MP++LLTA V GLE GADDY+ KPF+ EL AR + LLRR Sbjct: 81 LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 +A + L +DL SR+V ++LT+KEF LL F RH +V R+ + V Sbjct: 141 SAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVPDGQ 227 W FD + ++ + RLRGK+ + +L+QTV GVGY +P Q Sbjct: 201 WGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTLPSMQ 249 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE K + L + G+ V A NG + DLI+LD M+P+++G + Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--G 119 ++R +R + +PI++LTA ++ G E G DDY+VKPF+ EL AR++T+L+R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + E DL + R+V G + LT EF LLE FL++ G+ R + Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPDGQ 227 ++ ID + LR KI+ D P+ IQTV G+GY L+ P G+ Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLK-PRGE 230 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+ L++E++ + K L E G++VD+ +G G+ YDL++++ LP +NG Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+ + +R +PILLLT + V LE G DD+L+KPF+ EL AR+R LLR Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLR-SP 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L +D +SR+VT ++L+ KE++LLE FLR+ VL ++ I +W Sbjct: 120 RQANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + + +KRLR K+ K+I+TV GVGY L+ Sbjct: 180 SFESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRLKP 222 Score = 96.4 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 13/134 (9%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L V+D+ T L + L G V D+ + +L+ILD+ +P NG + Sbjct: 529 QILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVE 588 Query: 62 IVRMLRSAN--KGMPILLLTALGT---IEHRVKGLELGADDYLVKPFAFAELLARV---- 112 + + +R+ +PIL L+A I+ + GADDY+ KPFA AEL+ R+ Sbjct: 589 LCQTVRTDRSWNALPILFLSARKEPQTIQDI---YQAGADDYISKPFAEAELITRIFNRL 645 Query: 113 -RTLLRRGAAVIIE 125 R L R A Sbjct: 646 DRIHLLRSLAETDP 659 Score = 64.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD-VNG- 59 ++L+++D+ + E L + +D+ + DL++LD++ PD +G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVK 101 + ++ L+ +P+L+ T + R LG + +L K Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSK 505 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI ED+ E + L + G+ + A +G L T DL+ILDIM+P ++G+++ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR---- 118 VR++R MPI+ L+A + ++ GL +GADDY+ KPF ELLARV LRR Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 A S L +D R VT RI LT KEF +L H +V Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 175 IASQVWDMN-FDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLE 222 I QVW ++S N + V ++ LR K+ D + + I+TV GVGY + Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+DE++ L L + G+ V A++G G L +DL+ILD+MLP +GW Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+R + P+++LTA E V G E+GADDY+ KPF LLARV++LLR+ Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 ++ES ++ DL+++ S V+ S I L KE+ LL + +++ L R + ++VW Sbjct: 127 -MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWG 185 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F D ID +K LR KI + I+T+RG+GY L++ Sbjct: 186 YDFLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKLDL 223 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE L L + G+ VD A++G +L YDL ++D+ LP G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ R K PIL+LTA G + +V GLE GADDYLVKPF AEL+AR+ LLRR + Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q + +D ++ V G+ + LT+ E+ LE+ + G+ + ++ + ++ Sbjct: 121 GF-SSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD D+N I+V + RLR K+D D K I T+RG GY Sbjct: 180 AQDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRF 220 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 3/221 (1%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+V+D+ E L AGF V A +G D+++LD+MLP+++G+ ++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 RMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG--AA 121 +R +P+++LTALG E R+ GL+ GADDYL+KPF+ EL++RVR +LRR A Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + L+VD+ R+V + LT +EF LL F H +V R + +VW Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 ++FD D+ +DV V RLR K+ P + ++TV G GY Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 135/223 (60%), Gaps = 7/223 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI ED ++L GL GF +A++G +LA + +DL+ILD+ LP +G Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR-R-- 118 ++R +R + +PI++LTA ++ V+ LE GA+DY+ KPF F ELLAR++ LR R Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 GA E+ QV +L +DL++R+ + L++KEF L E LRH +V+ + + ++ Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW ++D +N I+V ++ LR K F + I+TVRG+GY L Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRL 221 >UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bacteria RepID=A5N1L7_CLOK5 Length = 228 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK E + + L + VDL NG +G ++G YD+IILDIMLP ++G Sbjct: 1 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P++LLTA G E +V+GL+ GADDYL KPF ELLAR+R L RR + Sbjct: 61 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ E + D+ +D ++ +++ LT KE LLE ++ +G ++ +++I ++W Sbjct: 121 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP-DGQ 227 D + N ++V V LR K+ N IQTVRG GY++ + DG+ Sbjct: 181 GYETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVIGIEKDGK 228 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +KL++VED+KK L L G+ V ++GL+ + +L+ILDIMLPD++G+ Sbjct: 5 VKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGY 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + LR + IL+LTALG + ++ G E GADDYL KPF ELLAR++ LLRR Sbjct: 65 EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 I + + L + R V +G + L+ EF LL + +++ V+ + I VW Sbjct: 125 ISISQP-IKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVW 183 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +++ N ++V V +R K+ P+LI+T+RGVGY L Sbjct: 184 GIDYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE + L++ G+ + A NG + LIILD+M+P+++GW+ Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + +R N +PIL+LTA +VKGL++GADDYL KPF EL+ARV LLRR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 Q +L +D+ KV + LT KEF LL+ L + +V R + ++ Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPD 225 W ++F D +D +K +R K+ + +I+TV GVGY L+ D Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEID 230 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ E L + L +A + +D+A +G G YD I+D+ LP ++G Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR PIL+LTA + +V+GL+ GADDYL KPF EL+AR++ L+RR A Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q ++ S ++ ++L+ E+ L E+F+ H GEV +S++ ++ Sbjct: 121 GK-SSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 D +FD D+N I+V ++RLR K+D + + LI+T+RG GY L+ D Sbjct: 180 DQDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLKPLDN 225 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L++ED+ E +++ L+ G+ VD A++GL G G YDL+ILDIM+P+++G+ + Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 +M+R ++ +PI+ LTAL ++KG +L DDY+ KPF+F L+ RV +LRR Sbjct: 65 CKMIRKSS-SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKT 123 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 I + L +DL + G I LT KEF +L+ + +V+ R + +W Sbjct: 124 INDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGY 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++ DT +D +K +R KI I+TV+G+GY LE Sbjct: 184 DYYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLE 219 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 9/221 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE E + + L G + +G YDLIILDIMLP ++G+++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + P + L+A ++ R+KG +GADDYL KPF ELLARV +LRR Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 S F+ ++ +D S +V +G + T KE+ LLE + ++ L R + VW Sbjct: 120 A--SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGY 177 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F+ DT +DV +++LR K++ + I+TV +GY LEV Sbjct: 178 DFEGDTRTVDVHIQKLRKKLEWEDR---IKTVYKLGYRLEV 215 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 9/228 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE+ + + L + + ADNG DL+ILD+MLP ++G++ Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + R +R +K +PIL+L+A G I + G LGADDYLVKPF+ EL RV+ LLRR Sbjct: 66 VCRTIRETSK-VPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 120 -----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + V ++ +L ++ S +V G + LT KEF LL F H +V R Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 + + +W + +DT+ I V +++LR KI+ D +P+ IQTV G+GY Sbjct: 185 LFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 1/220 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+ E + + + G++ +A +G G D I LDIMLP ++GW++ Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + +R NK +PI++LT G + ++KGL++GADDY+VKPF EL+AR++ ++RR + Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 123 IIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E Q + L+VD K IT+ KE LL + + +V R + Q+W Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 F+ D IDV +KR+R K+ I+T+RGVGY Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LI+EDE E L L + G+ D A +G++G LA++ YD+I+LD+MLP + G+ Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR +++L+A +E ++ GL+ GADDYL KPF EL AR+R + RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRR-H 138 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLT--SKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + DL +++ + ++ S T TLT SKEF L+E+ +R+ +V+ RS I + Sbjct: 139 GEVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEK 198 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +W + + + N +DV + LR K+ + I+ VRG+GY L+ Sbjct: 199 IWGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQ 242 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 9/228 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI++DEK+ + L L G V A NG G A DLI+LDIM+PD++G++ Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDGYE 61 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R PI+ L+A + R+KG LG DDY+VKPF+ ELLAR+ LRR Sbjct: 62 VCRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 122 VI------IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 I + ++ +DL SR+V G I LT KEF +LE H G+V + I Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLE 222 +VW + + DT + +K +R KI+N D + + I+TV G+GY E Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+DE + + GF V +G + YDL+ILDI LP ++G+ Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 ++R +R+ P+++LTA RV GLELGADDY+VKPF+ EL+ARVR LLRR A Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 121 -----AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 I ++ + L +D R+ T ++TL KEF LL + H G+V R ++ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 QVW + D +DV ++RLR K+ + D E LIQT G+GY Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED + + GLT+ +VVDLA +G G A+ +YDLI+LDI LP ++ Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR A PI+LL+A T + V GL+ GADDY++KP L ARVR LLRR Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + Q +L +D + +VT G + L+ KE+ LL + + + I ++W Sbjct: 121 DASTPT-LQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + VK LR K+ +I+TV G GY L+ Sbjct: 180 TFGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_B7KB48 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KB48_CYAP7 Length = 597 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 126/229 (55%), Gaps = 2/229 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ + ++ L + VDL +G G A+ G Y LI+LD+++P ++G Sbjct: 1 MKILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR + PI++LTA + E + GL+ GADDY+ KPF +LLAR+R L+RR Sbjct: 61 SLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S L D + KVT I L+ KE+++LE FLRH + RS I ++W Sbjct: 121 IKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE-VPDGQ 227 ++ A+ +K LR K+ + +LI+T+ +GY L+ PD Q Sbjct: 181 MIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRLKSAPDCQ 229 Score = 79.4 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + L L V + + T + D+++LD+ +P NG + Sbjct: 477 KVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNGLE 536 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R++R + +PI+++TA + GADD++ KP +E+LARV + R Sbjct: 537 LCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIERS 596 Query: 120 A 120 Sbjct: 597 R 597 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED + LT GL G+ VD +G + + + YDLIILD+ LP + G Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ R+A P+L+LTA G+ R++GL+ GADDYL KPF EL R++ LLRR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + + A L +D + V+R G I LT+ EF LL +F+ H ++L +S +A ++ Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 D + D+N ++V V LR K+ +I+T RG GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGR----SVIETRRGQGYI 216 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM---TGDYDLIILDIMLPDVN 58 ++L+V+DE + + L + L G VD+A G + + L YDL++LD MLP ++ Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G + + +R ++ PIL LTA T++ RV+GL+ GADDYLVKPF ELLARVR LLRR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 GAAVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 A + Q+ DL +D ++ R G I L+ KEF LLE+F+ H G++L I Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +VW +N + V+ LR ++ P+LI V G GY Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRF 226 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE L + L AGF VDLAD+G L T +D ++LD+ LP ++G Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R R+A G+P+L+LTA G +V G E GADDY+ KPF E++ R++ L+RR A Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ L +D S + + G + LT++E+ +L + L QG+ + RS I V+ Sbjct: 121 GHP-STELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 D + D D+N IDV V RLR K+ LI TVRG+GY LE Sbjct: 180 DRDSDRDSNVIDVLVGRLRRKLGAP----LIHTVRGLGYRLEAESA 221 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL+VEDE ++KGL ++G+ VD A +G L +YDLIILD+ LP ++G Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R N+ + IL+L+A I ++ GL+ GA+DYL+KPF F EL AR+R LLRR Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + ++ +D + V G I +T KE+ +LE+ + HQ +V+ + VW Sbjct: 121 SQ-KSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPD 225 D D +N++ + LR KI D E ++IQT+RG GY++ D Sbjct: 180 DSETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEND 225 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 292 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ +DE++ + L L + G+ A NGL + L++LD+M+P+++G Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +R + +PI+LLTA R+ GL++GADDY+ KPF+ ELLAR+ LRR + Sbjct: 67 ACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 E+ F V L +D+ R V+ G + LT KEF LL F+ + +V R + Q+ Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 W + + +D +K LR K+ IQTV G+GY E Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEA 227 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 4/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++ED+K+ E++ KGL E F V LA+ G L +D+I++DIMLP ++G Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V+++R PIL+L+AL + +V L+ GADDYLVKPF F EL++RV L RR Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 E+ + L ++ KVT + I L+ +E+ LL + L ++ +V+ R+ I + Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW +N+D++TN +DV + LR KI+ K I T++G+GYML+ Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIE--HNHKFIHTIKGIGYMLK 222 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE+ ++++ L +AG+ VD A+NG ++ YDL +LDIM+P +NG+++ Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR+ P+L L+A + +V GLE+GADDYL KPF EL+ARVR LLRRG Sbjct: 68 CRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMD 126 Query: 123 IIE---SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + +D I LT +EF LL ++ G+V R + + Sbjct: 127 AEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREA 186 Query: 180 WDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEV 223 W + ++T +D +KRLR K+ F+P +I+TVRG GY Sbjct: 187 WGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_B2IER4 Two component transcriptional regulator, winged helix family n=9 Tax=Proteobacteria RepID=B2IER4_BEII9 Length = 277 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 132/219 (60%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE + LT+ G+ V + + G G A + L+I+D MLP+ +G + Sbjct: 57 ILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRMLPETDGLTL 116 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LR P+L+++ALG+++ +++GL+ G DDYL KPFA EL ARV LLRR AA Sbjct: 117 IETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPAAE 176 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + +V L +DL+ R V R+ + L +EF LLE+ +R G+ + R+++ VW+ Sbjct: 177 ARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVWNY 236 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 NF TN +DV + +LR KID E ++I++VRG G+ L Sbjct: 237 NFLPQTNLVDVHIGKLRKKIDQPGEVQMIESVRGAGFRL 275 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI +D+ + + ++ L + G+ V A +G LA T D++I+DIM+P ++G + Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + + +PI++L+A + ++ G ++G DDY KPF+ AEL RV+ +LRR AV Sbjct: 66 SQKI-KMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 123 IIE---SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + ++ +R V G +TLT+KEF +L H ++ R + Q+ Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVP 224 W+ +F+ D + + V ++RLR KI+ D +P+LI+TV GVGY E P Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + L L A + V A + + L + DLI+LD MLP +G ++ Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 63 VRMLRSANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 R L+ +PI++LTA G +++V+GLE+GADDY+ KPF+ EL+AR++ +LRR Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ I QV L +D +S +VT S + + E+ LLEFFL HQ V R+ + VW Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N + +DV ++RLR + + + IQTVRG GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 136/223 (60%), Gaps = 5/223 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ GE + GL + G+ +D +G++G H +DL+ILD+ LP ++G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R LR+ +P+L+LTA ++ R+ GL+ GADDYLVKPF EL AR+R LLRR Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + A + +D +++V +G + LT KE+ LL L G+V R + ++ Sbjct: 121 GR-AKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + ++N ++V + LR K+ N LI+TVRG+GY++EV Sbjct: 180 GWDEEPESNTLEVNIYHLRKKLFNG----LIRTVRGIGYLVEV 218 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 133/235 (56%), Gaps = 10/235 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++LIV+D+KK +T LT G+ V A +G+ G + +G + +ILD+M+P ++G+ Sbjct: 11 IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 ++++ LR + +P+L+LTA+G R+ GLE+GADDYL K F+ ELLAR+R + RR Sbjct: 71 EMLKQLRKQS-DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 120 -------AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 + + ++ +L + L +R SG + LT E+ LL + VL R Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDG 226 + V ++D ++DV + LR K+ ++ P+ IQTVR VGYM PD Sbjct: 190 DQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDPDA 244 >UniRef50_B0TXI9 Response regulator receiver protein n=14 Tax=Francisella RepID=B0TXI9_FRAP2 Length = 229 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 137/223 (61%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ +D+KK +++ E G LA +G L T +YD++++D M+P ++G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++++LR N +P+++L+AL + E++++GL G+DDYL KPF+ EL+ RV L +R Sbjct: 66 LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + D+++D ++ +V R+ I L +E+ +L L+H+ EV+ +++I +V Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 WD +FD TN ++V + RLR K+ + P I+T+RG GY+++ Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVIQ 228 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDEKK + L+K L + GF V LA +GL + DLI+LD+MLP ++GW++ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 ++ +R N PI++LTA ++ GLELGADDY+ KPF+ EL R++ +LRR Sbjct: 65 MKKIRQKNN-TPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + +++L ++ + T + LT EF +L + G+V R I +V+ Sbjct: 124 EQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYMLEVPD 225 ++ ID + LR KI+ + ++ I+TV G+GY L + Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAEE 227 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ +D+ E + + + A +G + D++ILD+M+P ++G+ Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +R PI++LTA RV GLELGADDY+ KPF+ E++AR+R ++RR Sbjct: 93 EACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 AVIIES------QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 F L +DL R+V +G +++ KEF LL ++ G V R Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + QVW ++ D IDV +K++R ++D IQTV G+GY V Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPY-DCIQTVWGIGYKFGV 259 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI+EDEK + + L + + NG + +D +ILD+MLPD++G + Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + +R + +PIL+LTA R+ GL++GADDY+ KPF+ EL+ARVR ++RR Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 VIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +++ + DL VDL + + + LT+ EF LL F+++ G+V R + + Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 V ++ IDV +K LR KI+ ++ K I TV GVGY Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYY-KYIVTVYGVGYRF 227 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++EDE + +++ +GL G+ VD A NG +G LA +YD+++LD+MLP + G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR+ PI++LTAL E +V+GL++GADDYL KPF F EL+AR+ L RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 A---VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + ++ + D S +V I LT KE LL+ L G VL R I + Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW +N D TN +DV V RLR K+ + + I T+R VGY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEGQR--IVTLRNVGYRM 222 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 6/229 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI+ED++ E L + + V A +G G ++ + L++LDI+LP + G++ Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 I + +R ++ PI+ L+ I +VKGL+ GADDYL KPF F EL AR++ LRR Sbjct: 64 ICQKIRMLSEA-PIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKM 122 Query: 121 ---AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + F +L +DL S V G +++L +KE LL + ++ V I Sbjct: 123 NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYD 182 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPD 225 Q+W ++ D + V + LR KI +N +PKLI+TVRG GY D Sbjct: 183 QIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTAD 231 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 134/221 (60%), Gaps = 5/221 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+VED+++ E + + L + V +A +GL G +DLI+LD+M+P++NG++ Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + +M+RS + +PI++LTAL E ++KG +LG DDY+ KPF+F L+ RV +LRR Sbjct: 65 VSKMIRSQSN-VPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + ++ +D+ + +V + I LT+KEF +L+ +++ +VL R I +VW Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++ +T ID +K LR K+ I+T++G+GY ++ Sbjct: 184 YDYFGETRIIDTHIKNLRKKLAIP----YIKTIKGIGYKID 220 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED++K + L L + A +G ++DL+ILD+ LP +G+ Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-GA 120 +++ + + +P+++LTA G ++ G LG DDYL KPF+ AEL+ R++ +LRR Sbjct: 63 VLKEI-KNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + + V+L +R+V ++G + LTSKE+ LLE ++ + + I ++W Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 F D N + V V+RLR KI+ D P++I+TV GVGY E Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAE 224 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+ G + GL + G+ V L NG++ ++ +D+MLP++ G++ Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R LR +P+LLLTA +E RV GL+ GADDYL KPFAFAE AR+R L+RR A Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 ++ ++ +L +D + + T +G + ++SKEF LL H GE L RS I S+VW Sbjct: 140 A-GKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWG 198 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D N +D V LR K++ I TVRGVGY L Sbjct: 199 TTAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALSA 240 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 1 MK---LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV 57 MK +LI +DE + + + L + G+ V A +G H+ T DL++LDIM+P + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 NGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 +G+++ R +R+ + MPI+ L+A + +V GL LGADDY+ KPF EL+ARV LR Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 R------GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 R +S +V +++D R V G +I LT KEF +L H +V Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 I QVW ++ N + V ++ LR K+ D + KLI+TV GVGY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ EDE ++ L AG+ V A+NG +D+++LDIM+P+V+G+ Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + RS ++ + I++LTA E +V GL +GADDY+ KPF+ AELLAR+++LLRR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + +DL +++V ++G + +T E+ LL F++++ +V+ R + Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYM 220 VW N+ D +DV ++RLR KI +N EP+ I+T+ G GY Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYK 225 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ G+ L GL+++GF VD +G T + ++LD+ LP +G Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+L+LTA +E +V+GL+LGADDY++KPF E+ AR+R L+RR Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ D+ +D +R VT+ G + LT +EF LL L+ G VL R ++ Q++ Sbjct: 121 GKSA-PLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + +NA++V V LR K+ ND +I+TVRGVGYM P Sbjct: 180 TWDEGVGSNALEVHVHHLRRKLGND----VIRTVRGVGYMAAPP 219 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + L L + GF V A +G ++A DL++LD+M+P++ G++ Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 +R + P+++LTA ++ GLELGADDY+ KPF EL+AR+R +LRR Sbjct: 64 LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122 Query: 123 IIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 +E + AD+++D R V G + LT EF +L + G+V R + +V Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 F+ IDV ++ LR KI+ D P+ I+TV G+GY +P Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFALP 226 >UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMR9_LYSSC Length = 225 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ ED+ + + + L + V DNGL+ + +DL+ILD M+P ++G Sbjct: 1 MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + LR IL+LTA ++GL+ GADDYLVKPF ELLAR+R +LRR Sbjct: 61 EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 VI E QV +L +++ SR R T I LT EF LLEF ++G VL R I +W Sbjct: 121 KVI-EQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +FD N++D VK +R KID E IQ VRG+GY L Sbjct: 180 GYDFDVSNNSLDALVKLVRKKIDTSHEKSHIQNVRGIGYKLRD 222 >UniRef50_A1SID6 Two component transcriptional regulator, winged helix family n=1 Tax=Nocardioides sp. JS614 RepID=A1SID6_NOCSJ Length = 228 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 142/224 (63%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD-YDLIILDIMLPDVNG 59 M++L+ ED+ + + L + L EAG+ V++A +G + Y ++ D+ +LD MLP ++G Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R LR +PIL+LTA G + RV GL+ GADDYL KPF ELLAR+R L RRG Sbjct: 61 VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + ++ E+ Q+ DL+VD V+R+VTR G I L+++EF +L + H G V+ R +I +V Sbjct: 121 S-LVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEV 179 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 WD D +N IDV + +R KID F + I T+RGVGY ++ Sbjct: 180 WDGETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGYRVDP 223 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 343 3e-93 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 342 6e-93 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 340 2e-92 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 337 3e-91 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 334 1e-90 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 333 3e-90 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 333 3e-90 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 333 3e-90 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 332 4e-90 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 332 6e-90 UniRef50_Q026B5 Two component heavy metal response transcription... 331 1e-89 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 330 3e-89 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 329 5e-89 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 328 8e-89 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 328 9e-89 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 328 1e-88 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 328 1e-88 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 328 1e-88 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 327 2e-88 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 327 2e-88 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 327 2e-88 UniRef50_B8G179 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 327 3e-88 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 326 3e-88 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 326 4e-88 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 326 4e-88 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 325 7e-88 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 325 9e-88 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 324 2e-87 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 323 2e-87 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 322 5e-87 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 322 5e-87 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 322 7e-87 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 321 9e-87 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 321 9e-87 UniRef50_B8G869 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 320 2e-86 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 320 2e-86 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 320 2e-86 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 320 3e-86 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 319 4e-86 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 319 4e-86 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 319 5e-86 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 319 5e-86 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 319 5e-86 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 318 6e-86 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 318 8e-86 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 318 1e-85 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 318 1e-85 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 318 1e-85 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 318 1e-85 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 316 3e-85 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 316 4e-85 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 316 4e-85 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 316 4e-85 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 316 4e-85 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 316 5e-85 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 315 6e-85 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 315 7e-85 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 315 8e-85 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 315 8e-85 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 315 9e-85 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 314 1e-84 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 314 1e-84 UniRef50_UPI0001B559F0 two-component system, response regulator ... 314 2e-84 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 313 2e-84 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 313 2e-84 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 313 3e-84 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 313 3e-84 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 313 3e-84 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 313 4e-84 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 313 4e-84 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 313 4e-84 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 312 4e-84 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 312 7e-84 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 312 7e-84 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 312 8e-84 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 312 9e-84 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 311 1e-83 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 311 1e-83 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 311 1e-83 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 311 1e-83 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 310 2e-83 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q6AQP4 Probable two-component system response regulator... 310 2e-83 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 310 2e-83 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 310 2e-83 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 310 2e-83 UniRef50_C4L340 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 310 3e-83 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 310 3e-83 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 310 3e-83 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 310 3e-83 UniRef50_D1C280 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 309 4e-83 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 309 6e-83 UniRef50_B8G223 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 308 1e-82 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 308 1e-82 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 308 1e-82 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 308 1e-82 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 308 1e-82 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 308 1e-82 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 307 2e-82 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 307 2e-82 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 307 2e-82 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 307 2e-82 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 307 2e-82 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 307 2e-82 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 307 3e-82 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 307 3e-82 UniRef50_A4CE30 Probable two-component response regulator transc... 306 3e-82 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 306 3e-82 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 306 4e-82 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 305 5e-82 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 305 5e-82 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 305 6e-82 UniRef50_A4AL32 Putative two-component system response regulator... 305 6e-82 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 305 6e-82 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 305 7e-82 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_B8I014 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 304 1e-81 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 304 2e-81 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_A4J267 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 303 2e-81 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 303 3e-81 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 303 3e-81 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 303 3e-81 UniRef50_UPI00016C506D two component transcriptional regulator, ... 303 4e-81 UniRef50_C3QD36 Two-component system response regulator n=8 Tax=... 303 4e-81 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 303 4e-81 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_UPI00017468BB two component transcriptional regulator, ... 302 4e-81 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 302 5e-81 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 302 6e-81 UniRef50_C9ZA01 Putative two-component system response regulator... 302 6e-81 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 302 6e-81 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 302 6e-81 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 302 7e-81 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 302 7e-81 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 302 7e-81 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_C8W041 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 302 9e-81 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 301 1e-80 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 301 1e-80 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 301 1e-80 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 300 2e-80 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 300 2e-80 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 300 2e-80 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 300 2e-80 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 300 3e-80 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 300 3e-80 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 300 3e-80 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 300 4e-80 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 299 4e-80 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 299 4e-80 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 299 5e-80 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 299 6e-80 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 298 6e-80 Sequences not found previously or not previously below threshold: >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 136/221 (61%), Gaps = 1/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE K +++ L G+ V + ++GL+G A + DLI+LD MLP ++G DI Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LR +PI+LLTA I RV GL+ GADDY+VKPF ELLARVR LRR Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH-E 124 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 Q DL ++ +R+V R I LT+KEF LLE+ + H +VL R I +VW Sbjct: 125 EDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGY 184 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F D+N I+V V+ LR K++ + E +LIQTVRGVGY+L Sbjct: 185 DFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 342 bits (878), Expect = 6e-93, Method: Composition-based stats. Identities = 102/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE +T L +GL E G+ VD+ +G + A YD I+LD+MLP ++G+ Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR A + P+L+LTA G ++ R++GL+ GADDYL KPF+F EL AR+R L+RRGA Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + ++ DL +D +V R+G+ + L++KEF LL +RH EVL R+ I VW Sbjct: 150 -VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVW 208 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D FD +N +D V+ +R KID P LI+TVRGVGY L P Sbjct: 209 DFAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRTP 252 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 106/224 (47%), Positives = 138/224 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE + L + L E + VD+A +G G LA+T YDL ILDIMLP ++G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R +R A P+LLLTA T+E RV GL+ GADDYLVKPF ELLARVR L RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +DL +R VTR+G + LT+KEF LLE F+R+ +VL + +I +VW Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + D NA++ V LR KID P I TVRGVGYM Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMFHPD 224 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 97/223 (43%), Positives = 144/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE K ++++ L E GF VD G + + YD +LDIMLP +G Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR +PILLL+A +++GL GADDYL KPF+ EL+AR+R L+RR A Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + S ++V +L ++L++R+V R +I LT+KEF++LE +R G V R+ + +VW Sbjct: 166 GIGL-SVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW 224 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +FD TN +DV +++LR KID E KLIQTVRGVGY +E Sbjct: 225 NYHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 150/228 (65%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED KK E + K L GF+VDLA +G G LA++ +YD IILDI+LP ++G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 DIVRMLR-SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 +I R LR +PIL+LTALG++E+RV+GL +GADDY+ KPF EL+ARVR L+RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V+ + + DL+++L +R+V+ G + L+SKEF+LLE F+R+ G V R I ++ Sbjct: 121 -QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKL 179 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 W+ F+ +N +DV V LR K+ + I+TV +GY L+ D + Sbjct: 180 WESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKEDDK 227 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 334 bits (858), Expect = 1e-90, Method: Composition-based stats. Identities = 99/226 (43%), Positives = 136/226 (60%), Gaps = 2/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLI+EDE +L +GL E F VD A +G +G L M+ DYDL ++D MLP ++G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR A +P++ LTA T++ V GL GADDY+ KPFAF ELLAR+R LR Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLR--Q 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 L +D + + + +TLT KEF LLE+ LR+ V RS I VW Sbjct: 119 NTPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 D++FD+DT+ IDV V LR K++ LI+TVRGVGY++ P+ Sbjct: 179 DIHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRTPEA 224 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT---------GDYDLIILDI 52 ++L+VEDE + + L + GF VD+A +G + + + DL++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP VNG D R+LR +PIL+L+A T RV GLE+GADDYL KPF EL+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RTLLRRGAAVIIES--QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 R LLRR E+ + L + +V +TL+ KEF LLE F+RH V Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 R + ++W ++F D+ IDV ++ LR KI+ N P + TVRG GY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 105/224 (46%), Positives = 153/224 (68%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDEKK +++ +GL E G+VV+LA++G +GY A + YD+I+LDIMLP +G Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + +P++L+TA G ++ R++GL LGADDYL KPF EL+AR++ L RR + Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S QV DL+V+L +R+V R G + LT++EF LLE+ +R G VL R+ I VW Sbjct: 137 GKSL-SMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVW 195 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 +FD TN +DV V+RLR K+D + LI+TVRG GY + Sbjct: 196 GYDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE + E + + L AG+V + A +G L G +DL+ILD+M+P ++G Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 +R +R+ + P+++LTA G ++ GLE GADDY+VKPF+ EL+ARV+ +L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +L +D S V +G ++LT KEF LL F ++G L R I +V Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 W+ ++ + +D VK LRG + I TV G+GY + + Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFDPDAAR 299 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 97/225 (43%), Positives = 147/225 (65%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVN 58 MK+LI+EDEKK G L KGL + G+VVDLA +G ++ YDL+ILDIMLP ++ Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G + + LR+ N PIL+LTA +E ++ GLE GADDYLVKPF++ ELLAR+R LLRR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + +V D+ +D VS++V R I LT+KEF +LE+ +R+ ++ + I S Sbjct: 121 PKNLM-PTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW D+ +N ++ +K LR K++ + +I+T+RG+GY ++ Sbjct: 180 VWGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++ED + + L + V +G G HL T +DLIILDIMLP ++G Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + + LR+ N PIL+LTA + RV GLE GADDYL KPF+ EL ARV+ LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 120 ----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + + +L +D R++T ITLT+KEF LL + H G+V R + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 VW + ++ + RLR K++ D PK + TV GVGY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+ E L L + G+ ++ A++GL L+ILD+MLP ++G++ Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R++R+ + +PIL+LTA + +V GLE GADDYL KPF ELLAR++ LLRR Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 VIIESQ----FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 +++ ++ DL + + V R+G + + KEF L F ++++ V R + Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEV 223 +VW ++ T +DV + LR KI+ D P+ + TVRG GY E Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 116/225 (51%), Positives = 156/225 (69%), Gaps = 2/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK+ ++L +GL AG+ VD A G L DYDL++LD MLPD++G Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +RS G P+L+L+A G ++ RVKGLE GADDYLVKPFAF ELLARVR LLRR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR-- 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + QV+DL +D + RKVTR I L KEF +LE+ +R++G L R++I VW Sbjct: 119 GQPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 DM++D TN +DV ++ LR KID+ F+ KLIQTVRG+GYM+E PD Sbjct: 179 DMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPD 223 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 102/223 (45%), Positives = 151/223 (67%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+++T ++L K L E G DLA +G G LA G YD++I+D MLP ++G Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ P+L+L+ALG ++ RVKGL G DDYL KP+A++ELLARV L RR A Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ V DL++D +S +VTRSG I L +E+ LLE+ ++H G+V+ R+++ VW Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN IDV V RLR KID +F+ L+ TVRG GY + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRD 259 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 113/224 (50%), Positives = 159/224 (70%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+K YL+KGL E+G+VVD DNG G H+A T YDL+++D MLP+++G Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VRMLR+ P+L+L+ALG ++ RV+GL G DDYLVKPF+F+ELLAR+ LLRR Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 AVII-ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + +VADL +DL++R V R+G I L +EF LLE+F+R+ G+VL R+++ +V Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 WD +FD TN IDV + RLR KID DFE L+ T+RG GY+L Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 101/225 (44%), Positives = 152/225 (67%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VEDEKK +TK L + + VD +G +YD IILDIMLP ++G+ Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ +R+ +PILLLTA I+ +VKGL+ GADDYLVKPF F EL+AR+R LLRR + Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ VA+L VDL ++ V R G I L+ +E+++LE+ +R++G++LPR I +W Sbjct: 121 GN-ADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + ++ TN IDV ++ LR KID+ + PKLI T+RG+GY+L V + Sbjct: 180 NYEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRVDN 224 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 8/228 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++LI +DEK+ + L K L + VD A +G L Y+L+ILD+M+P ++G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 ++ R LR+ N +PIL+LTA ++ GL +GADDY+ KPF+ E++AR++ L+RR Sbjct: 64 EVCRRLRN-NTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 A ++ L +D+ VT I+LT KE LL+FF + +V ++ Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 + VWD N+ D N + V +++LR KI+ D PK IQTV G+GY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+D+K + L GF VD+A +G GY +Y+ +ILDIMLP+++GW++ Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 VRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +R++ N +PI++LTA + ++ GL+LGADDY++KPF+ EL+ARVR L+RR Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 A-VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + DL VD S KV + L KEF LL +++ V R I ++ Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYMLEVPD 225 W +F T +D VKR+R K++ + LIQTV GVGY EV + Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVKN 232 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LIVEDE+K L L G+ V + NG G A G Y L++LD+MLP ++G + Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R LR + P++LLTA +I +V GL++GA+DY+ KPF ELLAR+R LR+ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 VIIE--SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + DL V+ +R+V R + LT +EF LL + L+H +VL R I S V Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W ++ DTN +DV ++ +R K+D +E +LI T+RGVGY ++ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 145/223 (65%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ K ++ KGL + G+ VD A +G G LA + YD ++DIMLP+++G Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +VR LR+ MP+L L+A ++E RVKGL+ G DDYL KPFAFAEL AR++ L+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ D+ +DLVSR VT G + L +EF+LLE+ LRH G + + +I VW Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN +DV + RLR KID D I+T+RGVGY+ + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPD--KTRIETLRGVGYVFKA 226 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 129/227 (56%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+ L+ LT + V++A++G + L T +YDLI+LDI+LP ++G Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +RS+ + +PILLLT + + GL+ GADDY+VKP EL+ARVR LLRR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR-G 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + + L +D S +VT +++LT KE+ LLE +R+ V +I +W Sbjct: 120 GVTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDG 226 +A+ +K LR K+ P L++TV G+GY L+ + Sbjct: 180 SYEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEN 226 Score = 99.4 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+L+V+D+ KT E L LT G + + + D++ILDI +P ++G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 DIVRMLRS--ANKGMPILLLTALG--TIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 ++ +M+RS + +PIL LT I ++V +GADD++ KP +EL+ R+ L Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILNRL 499 Query: 117 RRGA 120 R Sbjct: 500 ERVR 503 Score = 70.9 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+ +D+ T + L L + G+ V D+G A+ D+I+LD+++P +NGW+ Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 VRMLRS--ANKGMPILL 77 + L+ K +PI++ Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 42.8 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI+ED+ + L +A G HL+ + DL+ILD++LP+ +G+ Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 IVRMLRSANK--GMPILLLTALG 82 +V L+ ++ +P+++ +A Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKD 1287 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 103/227 (45%), Positives = 147/227 (64%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDE L +GL+ G+ A++G G +A+ D D+++LDIMLP ++G Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R LR G+P+L+LTA +E +V L+ GADDYL KPFAF ELLAR+R L+RR Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +DL+SR+V R+G ++ L+S+EF LLE+ +RH +VL R I S VW Sbjct: 121 Q-PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D FD +N +DV V+ LR K+D EP LI TVRG GY + P + Sbjct: 180 DYAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPPREE 226 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 137/222 (61%), Gaps = 1/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L++EDE K ++ LT G+ V +A +G+ G A + DL++LD MLP ++G + Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R LRS +P++L+TA + R GL+ GADDY+VKPF+ ELL+R+R LR Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR-QPR 128 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + Q DL++D V+R+VTR ++ LT+KE+ LL + + H +VL R I VW Sbjct: 129 RSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F D+N I+V ++ LR KI+ E +LIQTVRGVGY+L Sbjct: 189 CDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 111/225 (49%), Positives = 147/225 (65%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDE+ L K L + VD NG + YDLI+LDIM+P +NG Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR+ N P+LLLTA TI+ RVKGL+LGADDYLVKPFAF ELLAR+R L+RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + F++ADL+VD KVTR ITL+SKEF +LE+ +R++ VL R I VW Sbjct: 133 GN-TSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVW 191 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + +++ +N IDV V+ LR K+D+ FE KLI TVRG GY+L V Sbjct: 192 NYDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRVES 236 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDEK + + L + V +G + +DL+ILD+MLP V G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 + R +R N +PI++LTA G +E R+ GLELGADDYLVKPF+ EL+ARVR LLRR Sbjct: 70 VCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +L +D+ KV G + LT+ EF LL R+ G V R + +V Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 180 WDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDGQ 227 +F+ ID VK LR KI DN PK + TV GVGY E P Q Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQ 237 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 146/235 (62%), Gaps = 10/235 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++EDE ++ + L EAG+ V +A +G +G +A ++ LIILD+MLP +NG Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR PIL+LTALG+ E+ V GL+ GADDYLVKPF AELLAR+R+LLRR Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 ----------AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + +VADL +DL ++ +R G I LT+ E+ LLE+ +R+ VL Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 R I VW ++F+ +T +DV V LR K++ +P LIQTV G+GYML+ + Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEEE 235 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + + L L + + A NG L + L++LD+M+P+++G Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +R + +PI++LTA R+ GL++GADDY+ KPF+ ELLAR+ LRR Sbjct: 67 ACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V + + L +D SR V SG I+LT KEF LL F+++ +V R + Q+ Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 W ++ + +D +K LR K+ IQTV G+GY E Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEE 227 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 102/223 (45%), Positives = 156/223 (69%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++K ++ GL ++GF VD A NG +G HLA T Y + I+D+MLP ++G Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR PI++L+A ++E RV+GLE G DDYL KPF+FAELLARV+ L+RR Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ V +L ++L++R+V+R T + L +EF LLE+F+R+ G+VL +++I VW Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN +DV V RLR KID D++ K++ T+RGVGY+L+ Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE L+ L +AG+ V A +G + L + + I+LD+MLP ++G + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR PI+++TA +V GLELGADDY+ KPF+ E+LAR++ ++RR Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 -----------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + V DL +D +V R+G I+LT KEF LL +F+ +G VL Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 R I + VW ++ S+T +D+ + LR KI+ D + P+LI+TVRG GY Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 131/232 (56%), Gaps = 13/232 (5%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+DE E L+ L ++G+ V++A +G A DL++LDIMLP+V+G Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 DIVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 ++ R L++ G+PI++LTA RV GLELGADDY+VKPF+ ELLARV+ +LRR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 GAAVII--------ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 A+V E + L +D S + I LT KE+ LL+ + + G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 R + ++W + DT +DV ++ LR K+ +D I+TVRGVGY Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+ E +T L G+ V +A+ G L DL++LD+MLP+++G D Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 IVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR-- 117 + + +R +P+++L+A + RV GLELGADDY+ KPF+ ELLAR++ LR Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 118 RGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 R + DL + S VT G ++TLT KEF LL F++ +V R + Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +VW DT +DV + LR K+ + +I++VRGVGY L Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVS--PIIESVRGVGYRL 224 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+VEDE L L + G+ V +A +G + A DL+++D MLP V+G + Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 IVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R LR +PI++LTA G RV+GL+ GADDY+VKPF+ EL AR+R +LRR Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + E + D+ +D V+ +V R+ I L EF LL++ ++H G V R + V Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 W + + +DV V RLR ++N E I+TVR GY +V Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 123/227 (54%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ + L L ++VD +G G+ A YDLI++D+ LP +G Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR+ +PILL+TA R+ GL+ GADDYL KP AEL ARVR LLRRG+ Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 QV +L +D S +VT + + LT KE+ LLE FLRH G+V R + +W Sbjct: 121 -ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + ++ VK LR K+ I+ + G+GY L PD + Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPDSE 226 Score = 92.9 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+D+ E + L G + +N L + + + DL+ILD+ +P +G ++ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 VRMLRSANK--GMPILLLTA-LG-TIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 + LRS + +PI+ LTA +V +GADD++ KP ELL R+ L R Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 GA 120 Sbjct: 500 TR 501 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED++ L + LT+ + V++A++G G+ A +YDLI+ D++LP ++G Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LRS PILL+TA R++GL+ GADDYL+KP EL ARVR LLRRG Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +V L +D +VT + LT KE++LLE LR+ V R I +W Sbjct: 121 -TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + +K LR K+ I+ V G+GY L+ Sbjct: 180 TFDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLK 221 Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+D+ L L G + D+ L + + + DL+ILD+ +P ++G ++ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 VRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R+ + +PI+ LTA +E + G DDY+VKP AELLAR+ L R Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DEK + L L + VD A +G YD+I+LDIMLP ++G Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 + + +R + +PI++LTA G ++ GL+ GADDY+ KPF E+ AR++ +LRR Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 119 -GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + D+ +D SR + + I LT+KEF LLE + G+V R + Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 VW ++ D +DV ++RLR KI+ N EPK + T GVGY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+D++K + LT L + G+ V A +G A D+++LD+MLP ++GW Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 + + +R + +PI++LTA R+ GLELGADDY++KPF+ E+LAR+R + RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 E +V D ++D SR +T +GT + LT E+ LLE FL H G+V R + Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYML 221 +V D F+ +D +K LR K+ EP I+T+ GVGY L Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 13/237 (5%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L EDE K ++ GL E GFVV+ D+G Y A+ +YD+I+LDIM+P +G Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR + P++LLTA ++ R++GL LGADDY+ KPF EL+AR+ ++RR A Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRS------------GTRITLTSKEFTLLEFFLRHQGE 168 + V +D ++R VT + LT++EF LLE+ +R G Sbjct: 121 GEQ-PNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGR 179 Query: 169 VLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 V R+ + VW +F+ TN +DV ++RLR KID + I++VRGVGY + Sbjct: 180 VFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFRQAE 236 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+V+DE + L L + GF V A +G GD+DLI+LD+MLP V+G Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R+A PI++LTA ++ GLELGADDY+ KPF EL+AR+R +LRR A Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 122 VIIESQ---FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + V DL++ R+ +G + LT++E+ LLE RH G V R + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 VW +F D +DV V+R+R K++ D P+ ++T GVGY LE Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 105/223 (47%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEKKT ++ K L F VD++ +G LA +D I+LDIMLP +G Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR P+LLL+A G + RV+GL GADDYL KPFA AEL+ARVR++ RR Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRS- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 QVADL +D ++R+ R GT LT++E+ LLEF +R G + R I +VW Sbjct: 120 NEPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D +FD TN +DV +KRLR K+D FEPKL+ TVR VGY+++ Sbjct: 180 DYDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKE 222 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVED++ LT LT + V++ +G+ + L T DYDLI+LD++LP ++G Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +RS+ + MPILLLT + + GL+ GADDY+VKPF EL+ARVR LLRR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR-G 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +L +D S +V + ++LT KE+ LLE FLRH V S+I +W Sbjct: 120 GTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDGQ 227 A+ +K LR K+ N P L++TV G+GY L+ + + Sbjct: 180 SYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEE 227 Score = 92.9 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L V+D+ + L L G V D+ + + DL+ILD+ +P NG + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 IVRMLRS--ANKGMPILLLTAL--GTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +++R+ +PIL LT G I ++V +GADD++ KP EL+ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 82.8 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+ +D+ L L + G+ V G A T D+I+LD+++P +NGW+ Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 VRMLRS--ANKGMPILL 77 + ML+ K +PI++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 45.1 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 12/122 (9%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVED+ E A G HL+ + DL+ILD++LP+ +G+ Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 IVRMLRSANK--GMPILLLTALG-TIEHRVKGLELGADDYL------VKPFAFA--ELLA 110 +V L+ + +P+++ +A R + L+LG ++L K F ELL Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620 Query: 111 RV 112 R+ Sbjct: 1621 RI 1622 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 108/225 (48%), Positives = 154/225 (68%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE K ++ KGL E VD+A +G G ++A+ YD+I+LDI LP +NG+ Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+V+ +R P+L+LTA+G+++ ++ G E GADDYLVKPF F EL+AR+R L +R + Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 A + + +VADL +DL + R RI LT+KEF LL++ +R++G V+ R IA +V Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 WD++FD+ TN IDV V LR KID DF KLI TV G+GYML+ Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKED 230 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L AG+ V +G + + DLI+LD+MLP ++G Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 + R LR + +PI++LTAL + ++ GL+ GADDY+ KPF+ EL++R++ + RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + F + L V R+V G I LT KEF LL F +H+G+VL R + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPD 225 VWD +F DT +DV + LR KI+ + P+ I TVR VGY L P+ Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L L + +D A+NG + +YDLI+LD+M+P +G + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R PI++LTA G +RV+G E G DDY+VKPF+ E++ RV+ LLRR + Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 -------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 ++ + L +D + +VT GT ++LT KE+ LL F + +V R Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDN--DFEPKLIQTVRGVGYMLEV 223 + +VW F D +D VKRLR K++ K I TV GVGY EV Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE+ K L VD NG T YD+I++DIM+P ++G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R+ P+LLLTA +++ +V L GADDYLVKPF EL AR+ L RR A Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V L +++ R V R G ITLT+KEF LL + ++ VL R I VW Sbjct: 121 RHAQND-IHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + +++S +N IDV +K LR KID D KLIQTVRGVGY+L+ + Sbjct: 180 EYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTEN 224 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI+ED+ + L++ G D+A +GL+G A++ +YD+IILD+MLP ++G + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + +PIL+LT+ + +V L GADDY+ KPF+ EL ARV +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 VIIESQFQ------VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 S L +D + KVT + I +T+KEF LL F+++ G R+ + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 VW ++ + ++ + RLR KI +N +PK I TV GVGY Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 146/227 (64%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+++ YL K TEAG D+A +G GY LA G YD++++D MLP +G Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V LR+ P+L+L+ALG ++ RV GL G DDYL KP+AF+ELLARV L RR + Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ ++V DL +D ++ R ITL +EF LLE+ +RH G+V+ R+++ VW Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D +FD TN IDV + RLR KI+ F+ L+ TVRG GYML+ + Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKAGRAK 247 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 4/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L++ED+ K L L GF V A +G G ++A G YD+I+LD+MLP ++G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTA I +V G + GADDY+ KPF+ ELLAR++ LLRR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 VI-IESQFQVADLMVDLVSRKVTRS--GTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + F+ DL ++ + +V R I L+ +EF LL+F + ++G VL R I + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VW ++ + N +D+ +K LR KID +E K IQTVRG+G++ + Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 128/242 (52%), Gaps = 20/242 (8%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE + + L + G+ V+ +G ++ DYDLIILD+MLP ++G + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 IVRMLR-SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR-RG 119 + R +R +++ +P+++LTA ++ GLE+GADDY+ KPF+ ELLARV+ LR R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 -----------------AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFF 162 E + L + + + LT KEF LL Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 163 LRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 + + G+VL R + ++W +F DT +DV ++ LR KI + P L++TVRG+GY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 222 EV 223 + Sbjct: 243 KE 244 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 141/219 (64%), Gaps = 1/219 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE+ +TK L + VD +G DYDLII DIM+P+V+G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + ++ LR + P+++LTA T+E ++ GL+ GADDY+VKPF F EL AR+R L+RR Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q+ D+++D+ ++VTR+G I LT KE+ +LE+ ++++ +L R I + VW Sbjct: 121 GLAT-NVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 D ++D +N +DV +K +R K+DN + +I T RG+GY Sbjct: 180 DYDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL+VED++ E + + L ++V+LA +G G LA +YDLI+LD+MLP ++G Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R PILL+T +VK L+ GADDYLVKPF ELLARVR LLRR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRR-G 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + Q L ++ S +VT G I LT+KE+ +LE FLR++ + +S + +W Sbjct: 120 GLSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 + NA+ +K LR K+ P LI+TV G+GY L Sbjct: 180 SFDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 2/113 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + + L GF + L ++ + + DL+ILD+ +P+++G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +++R+ +PIL L+ + +G + GADDY+ KP +EL+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 43.2 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNG-- 59 LLIV+++ + + G + +A + D+I+LD+ PD Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFA 106 ++++ +R +P ++ + RVK LGA +L KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPE 480 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ E L L + + V+LA +G L +YDLI+ D+MLP ++G Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LRS +PILLLT + R GL+ GADDY+VKPF EL ARVR LLRRG Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 I + +L +D + +V + LT KE+ L+E +R+ V +I +W Sbjct: 121 -AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 A+ +K LR K+ P LI+TV G+GY L+ Sbjct: 180 TYEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKP 223 Score = 95.9 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 11/148 (7%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +++IV+D+ + E + G V D + DL++LD+ +P++ G D Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 IVRMLRS--ANKGMPILLLTALGTIEHRV-KGLELGADDYLVKPFAFAELLARVRTLLRR 118 + R++R+ + +PI+ LTA T V + GADD++ KP EL+ R+ L R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRI---LNR 604 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSG 146 ++ + +D ++R ++R Sbjct: 605 LERTRLQRRLS----TIDPLARVLSRHE 628 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED + GF + +GL GY ++DLIILDIMLP ++G Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 I R +R + +PI++LTA T +V G E+GADDY+ KPF+ L+AR++ ++RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 119 --GAAVIIESQFQVADLMVDLVSRKVTRSGTRIT-LTSKEFTLLEFFLRHQGEVLPRSLI 175 G AVI E + ++ +R+V +G + LT KEF LL + +++ +V R + Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 QVW F D +DV +KRLR K+ ++ +P + TV GVGY + Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 135/227 (59%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLIV+DE+ L +GL+ GF VD A +G G +A YD I+LDIMLP VNG+ Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++LR PIL+LTA + L+ GADD L KPF+F L+AR+R LLRR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRN- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q DL +D S +VTR I LT++EF+ LE LR++G VL + I + VW Sbjct: 120 VESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 D +F+ D+N ++V + LR KID F K I T+RGVGY LE G+ Sbjct: 180 DYDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEEDGGR 226 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++++EDE E L GLT G V +A G + + DL+ILD+MLPD++G Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR+ ++ +PI++LTA G ++ RVKGL+LGADDY+VKPF+F ELLARV + RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + QVA L ++L +R+VT G I LT EF LLE F+RH V R + S+VW Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + D+N ++V + LR KI D E KLI+TV GVGY L D Sbjct: 198 FTYVGDSNIVEVHISNLREKIG-DHERKLIRTVYGVGYTLRPDD 240 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 138/227 (60%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LLI+ED + + L +G E G VD A +G NG L +G YD +ILDIMLP+++G+ Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R +P+++LTA ++E RV GLE GADDYL KPF F EL+ARV L+RR Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRS- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S + L +D V+R+ ++ L +EF +LE +R++ +V R I +QVW Sbjct: 120 GDQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +D +N +DV +K LR K+ ++ TVRGVGY + P+G+ Sbjct: 180 QKEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVANPEGE 226 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 145/222 (65%), Gaps = 4/222 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+++D+ K L + LT G+ V++A++G G ++A +L+ILDIMLP ++GW+ Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + R N PIL+L+A +E +VKGL LGADDYL KPFA ELLARV+ LLRR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR--R 120 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + Q +DL +DL +R+V R+G +TLTS+EF LL F+ H +VL R I +VW Sbjct: 121 ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWG 180 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++F +N ++V + LR KI++ ++I TVRGVGY+L+ Sbjct: 181 LDFTGGSNVLEVYINMLRQKIEDYGS-RIIHTVRGVGYVLKE 221 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + + LT+ +VVD+A +G G+ L +YDLI+LD++LP ++G Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR M ILLLTA T +V GL+ GADDY+VKPF F EL AR+R LLRR Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRR-G 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + L++D + +VT + + LT+KEF+LL+ FLR+ + R+ I Q+W Sbjct: 120 NTALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLW 179 Query: 181 DMNFD-SDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 D + N I +K LR K+ I+TV G+GY L+ Sbjct: 180 SAEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKA 224 Score = 77.5 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++++VED+ + + + L G + ++ + DL+ILD +P +NG + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 IVRMLRSANKG--MPILL----LTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 + +++R+ +P++ L+A I ++ +GADD + KP + L+A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+ + LTK LT ++VD+ +G G+ T +YDLIILDIMLP+++G Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + R+ +PILLLTA I +V+GL+ GADDY+VKPF EL+AR+R LLRRG+ Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 DL+++ + +VT +G + LT+ E+ LLE LR+ V + ++W Sbjct: 121 NNPFP-LLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDGQ 227 + V+RLR K+ P I T+ G GY L+ P + Sbjct: 180 SSEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPSTE 227 Score = 96.3 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++I++D++ L L GF V + + + D ++LD+ +P +NG++ Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 IVRMLRSANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + ++LRS +P+L L+ L + + +G DDYL KP EL R+ LRR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRRL 643 Query: 120 AAVII 124 V Sbjct: 644 QRVRA 648 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 1/226 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE K L + LTE G VD +G + GDYD ++LD+MLP ++G++ Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR P+L+LTA G + R+ GL+ GADDYL KPF EL AR+R L RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR-GP 142 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + DL +D +V R+ T I L+ KEFTLLE +R G V R+ + + WD Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +++ +N +DV ++ LR KID F ++T+RG GY L G+ Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRKDGGR 248 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 146/221 (66%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+++ ++L + LTEAGF +D+A NG G+ LA+ YD II+D++LP ++G Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I++ LR+ P+L+L+A G++ RV GLELG DDYL KPF AELLARV +L+RR Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q + DL +DLVSR+V R L +EF LLE+ +R++G V+ R+ I VW Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 NF TN ++V + RLR K++ +P+L+QT R GY L Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 8/234 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+D+ E ++ L G+ V A + + D+ I+DIMLP ++G++ Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 IVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR- 118 +VR LR + P++ L+A G +V GLELGADDY+ KPF+ E++AR++ + RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + L +D+ +V +++LT EF LL F ++G+V R + Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPDGQ 227 + ++W ++ DT +DV ++RLR KI+ D PK I TVRG GY P + Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 262 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 126/233 (54%), Gaps = 9/233 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+ E + L + V A NG G+ + +T DLIILD+M+P +GW+ Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + +R + +PI++LTA G R+ GL +GADDYL KPF+ EL+ RV+ +LRRG Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 ------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + + DL + +R V + LT KEF +L +H +V RS + Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPDGQ 227 +WD + +N + V V RLR K++ + I TV G+GY E P+G+ Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE-PNGR 233 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 137/222 (61%), Gaps = 3/222 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L++EDEK ++ L G+ ++A +G+ G + DL+ILD+MLP ++G ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R + PI++LTA I+ +V+GL+ GADDYL+KPF+ ELLARVR LRR Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + +VADL+++L R++ R G R+ L++KEF LLE R+ G+V R I +VW Sbjct: 126 VTGEV-RVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-P 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + +N +DV + LR K++ E +LI TVRGVGY+L Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE 225 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ T +++ LT+ + VD +NG G LA YD+I+LDIMLP ++G Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LRS PILLLTA V GLE GADDYLVKPF +AELLAR++ L RRG Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V+ + + +L+++ + +VT G + LT E++LLE FLRH V R +I Q+W Sbjct: 121 QVLPD-VLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 ++ I +K LR K+ + +I+TV G GY L Sbjct: 180 TLDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 84.4 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 5 IVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVR 64 +++D+ E L LT GF V N + + + DL+ILD+ +P +G ++ + Sbjct: 512 LIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNLCQ 571 Query: 65 MLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELL 109 +R ++ +PIL L+ E + L GAD YL K A EL+ Sbjct: 572 AVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 141/226 (62%), Gaps = 5/226 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++ IVEDE++ +L L GF ++ +NG Y M G++DL++LD+MLP ++G Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 I + +R + +PI++LTA +E +V GL++GADDY+ KPFA EL+AR+R LR+ Sbjct: 66 ICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 120 --AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 V +E + QV +L++ +V G + LT KE++LLE+ +R++ VL R I Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +VW ++ DTN +DV ++ LR K+D+ F K I TVRGVGY ++ Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DE+ L L + GFV ++ +G LA YD I+LDIMLP ++G + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LRS PI++++A +V LELGADDY+ KPF+ ELLARV+ +LRR A Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 122 VII-------ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 I E + ++ L + +V + + LT KE+ LL + ++H L R Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEV 223 + ++W +F +T +DV + +LR KI++ P+ IQT+RG GY + Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKE 240 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 2/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+ED+++ + L + L VVD+A +G+ G+ A G+YDLI+LD+MLP ++G Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR++N IL+LTA T +++ GL+ GADDYLVKPF EL AR+R L RR Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRS- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + DL +D + VT ++LT KE+ +LE FL++ +VL RS I ++W Sbjct: 120 QETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPDGQ 227 + + S + + LR K+ I+TV G+GY L +GQ Sbjct: 180 EFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKEGQ 227 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 126/232 (54%), Gaps = 13/232 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA----------MTGDYDLIILDI 52 +L++EDE E + L E G+ +A +G +L G+ LIILD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP +NG D+ R++R +PIL+++A G+ RV GLE+GADDYL KPF E+LAR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 RTLLRRGA--AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 R LLRR + + DL + + T G + L+ KE+ LLE F+RH V Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 PR + QVW +F D+ +DV ++ LR KI+ + P+ I TVRG GY Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ E L+ AGF V A +GL G +A DLIILD+MLP ++G+ + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR---RG 119 R + + +PI+LLTAL HR+ GLELGA DY+VKPF+ ELLARVR +LR R Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + V + +D SR+V I L+ KEF LL + + G L R L+ +V Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 W +F IDV V+ LR K++ D P LI+TVRG+GY + P Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDP 228 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+LI+ED+ E + + +AG+ A +G G L + D IILDIMLP +NGW Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 ++ + +R ++ +PI++LT G +KGL +GADDY+VKPF EL+ARV+T+LRR Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + + Q ++++ + +V + + + KE L + + +VL R + +V Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 W F+ D +DV +KR+R K+ I T+RGVGY E Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEENSN 231 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 92/225 (40%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VEDE+K +++ +GL F V +G GY A +D+IILDIMLP +G Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 DI+R LR PI+LLTA + RV+GL++GADDYL KPF EL AR++ LLRR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +V L +D ++R + G + LTS+EF+LLE +R +VL R + VW Sbjct: 121 GTQ-QHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGK---IDNDFE-PKLIQTVRGVGYML 221 +FD TN +DV +KR+R K ++ + I+++RG GY L Sbjct: 180 GYDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 141/226 (62%), Gaps = 4/226 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D++ E L + L+ G+ V+LA +G+ + + D ++LD+M+P ++G + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LRS +PIL+LTA ++ RV GL+ GADDYL KPFA ELLAR+R LLRR Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 122 VIIES----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 E+ +DL +D V+R+VTR RI+LT EF LLE + + VL RS I Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +VW +F + NA++V V LR K + + EP+LI TVRGVGY+L Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED+K L+ L + G+ V++A +G+ + + DL++LDIMLP+ +GW+ Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTA +V GL++GADDY+ KPF ELLAR+ +LRR + Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 VIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +SQ +DLV R V G + L+ +EF +L+ L G V R +I +W Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPD 225 NF + A+DV ++ LR K+++D PK I TVR +GY + + Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 122/235 (51%), Gaps = 12/235 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+D+ E ++ L + F + +G +LI+LD+MLP ++G++ Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R + +PI++L+A G I +V GLELGADDY++KPF EL+ARV+ +LRR Sbjct: 66 VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 122 VIIESQ----------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 S+ DL+++ + VT G I + KE L F H +V Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 R + +W + DT +DV +KRLR KI + +L TV G+GY EV Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVKKN 238 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 141/224 (62%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDEK + + + L + F VD+ +G G ++A+ D+D++ILD++LP +GW Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I++ +R P+L+LTAL +E+RVKGL +GADDYL KPF EL+ARV+ L+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRR-K 129 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A + DL++D +RKV R G I LT KE+ +LE+ + ++ V+ + + +W Sbjct: 130 AENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLW 189 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + ++ + +K LR KID F+ K+I TVRG+GY++ Sbjct: 190 SFDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVRDE 233 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE + L L F + A NG Y LAM +Y I+LD+MLP+++G + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 LR +K PI++LTA G +RV+G E GADDY+VKPF+ E++ RV+ LLRR + Sbjct: 65 ATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 123 IIE-------SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 +E + L +D + +V + LT KE+ LL + + +V R + Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEP--KLIQTVRGVGYMLEVPDG 226 +VW F D +D VKRLR K++ +IQTV GVGY EV Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSN 236 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+VED+ E + L F VD+A +G G +A+T Y+LIILD+MLP ++GW+I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 R LR +A + PI++LTA +V GL++GADDYL KPF E LARV LLRR Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 -VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L + S + + LT KEF LL R+ G L R + QVW Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVPDG 226 + T ID +KRLR KI + +QTV GVGY LEV + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEN 235 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 1/216 (0%) Query: 7 EDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRML 66 ED++ + + L +V+DLA +G+ G +A YDLI++D MLP ++G + + L Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIES 126 R+ PI+LLTA RV GL+ GADDYLVKPF F ELLAR+R LLRR ++ Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIV-SP 120 Query: 127 QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDS 186 Q DL +D S +VT I LT KE+ LLE FLR+ + + +VW Sbjct: 121 VLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTP 180 Query: 187 DTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 ++ +K LR K+ +I TV G+GY L Sbjct: 181 TVASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLR 216 Score = 99.0 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL+V+D+ L K L GF +++ + + + DL++LDI +P ++G+D+ Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 VRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++RS +PIL ++A + + +GADDY+ KP EL+ARV L R Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 121 AVIIESQF 128 + ++ Sbjct: 691 DRRLRTEI 698 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ +D+ KT + L LT GF V A +G LA++ DL+ILD+M+P V+G+ Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + +R+A+ +PILLLTA G +V G LGADDY+ KPF EL+ RV +LRR Sbjct: 66 VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L ++ +R V LT +EF LL H G R + ++VW Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 182 MNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVPDGQ 227 + +D + + V ++RLR KI++ +P+ I+TV G+GY + + Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L V+D+ K + L L + GF V A +G A DL+ILD+M+P ++G++ Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--G 119 + L++ + +PI++L+A RV G +G DDY KPF+ EL RV+ +LRR Sbjct: 64 TYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 V +E+ + +L +D R V + +++ LT K+F LL + V ++ + ++ Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 WD +F D N + V ++RLR K++ D P+ I+TV G+GY E Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYE 228 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 98/223 (43%), Positives = 146/223 (65%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI++D+K + +GLT G+ V +A+ G G +L + + DLIILDIM+PD++G + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-GA 120 + + LR + G+PIL++T + +I RV GLE GADDYLVKPFAF EL+ARV+ LLRR Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + +DL+VDL +R+ R I ++ EF LL FF++H +VL R L+ +VW Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F ++N ++V V LR K++ EP+LI TVRG GY+L Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 100/224 (44%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLLIVEDE L KG E V +A +G + ++D+++LD+MLPD+NG Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I R LR++ +PILLLTALGT E+ V GL GADDYLVKPF F EL ARV L RR Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 AVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + DL ++ ++ V R G I LT+KEF LL + ++ G ++ R I V Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 WD+NFD +TN +DV + LR K+D F+ KLI T++G+GY+++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIKP 224 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+ EDEK+ E L GL E G V + NG++ +AM+G++D ++LD+MLP ++G+ Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR + +PIL+LTA ++GL+ GADDY+ KPF+F+ELLAR+R + RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRT- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S DL +D S +V R I LT EF LL+ +++ G + R + VW Sbjct: 120 GPHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 + + N +D ++ LR K+D PKLIQTVRG GY Sbjct: 180 GYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 5/227 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DE+ + + L GF V+ +G DL++LD+ML D++G+ Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR A G+P L LTA T + +V+GL LG DDY+ KPF+ +EL+ARVR +LRR + Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 VII----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + + ADL +D +R+V R+G + LT+ E+ LL+F L + VL R+ + Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW +F + ++ + LR K+DN EP LI TVRGVGY+L +P Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNV-EPPLIHTVRGVGYVLRLP 305 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGW 60 ++LIVED+ + + L+ G + +G L + +DL++LD+MLP ++G Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 DIVRMLRSAN---KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + R LR ++ + +P+++LTA V GLE+GADDY+ KPF+ +L +RVR LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 R----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 R A + + + L +DL+ R+VT G ++ LT++EF +L + G V R Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 I +W F + + DV ++ LR KI+ D + P+ IQTVRG+GY Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 104/222 (46%), Positives = 149/222 (67%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ G+ L +GL+EAG G +G A T +D ++LD+MLPD G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++VR +R G P+L+LTALG+++ RV GL GADDYLVKPFAF ELLAR+ + RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 SQ +V L++DL +RKVTR+ + ++LT EF+LLEF +R+ G+V+ R ++ +W Sbjct: 121 DRP-SSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + +++ TN ++V + RLRGKID F LIQTVRG GY+L Sbjct: 180 ESDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLR 221 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 103/226 (45%), Positives = 154/226 (68%), Gaps = 3/226 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE K + KGL E GF VD+A +G G LA + +YDL+ILD+ LP NG++ Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + ++R N +PI++LTALG ++ +++ ELGADDYLVKPF F EL+AR+R L+R + Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 VIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + E+ + + DL +D ++VTR G +I LT+KE+ LLEF H+G+V+ + +IA + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VWD++FD+ TN I+V + LR KID DF+ KL+ T G+GY L Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 9/232 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVED+++ + + + L F + ++G G + DLI+LD+MLP ++G ++ Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 VRMLRSA-NKGMP-ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 +R P IL+LTA G R+ GL GADDYLVKPF+ EL+ARVR LLRR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTR----SGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + ++ VDL + +R + LT EF LL F+ + G V R+ Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPD 225 + ++W +F D +D ++RLR KI+ D P I+TV G+GY E PD Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 8/231 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+++V+DEK + L L + G+ V A +G + L + D+++LDIMLP +G + Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R MPI++LTA + +V GLELGADDY+ KPF+ EL+ARV+ LRR + Sbjct: 64 VCREVRKK-YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 VIIE------SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ + D+++ + + + G I LT +EF L + +H G+V+ R + Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPD 225 VW ++ D +DV ++RLR KI++D P+ I T RGVGY L+ + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 233 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 136/223 (60%), Gaps = 4/223 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE +T+ L + G+ VD A NG YDLI+LD+M+P ++G Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R+A P+L+LTA ++ VKGL+ GADDYLVKPF F ELLARVRTL+RR + Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +L +DL + V SG +I LT KE+ +LEF + ++G +L R I VW Sbjct: 121 GNVASE-ICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D ++ +N IDV +K +R K+ E + IQT RG+GY+++ Sbjct: 180 DFDYTGGSNVIDVLIKNIRKKL---GECEAIQTKRGLGYVVKD 219 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + + L GF V+ ADNG +A T D ILD+M+P ++G+ Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR A P L LTA +E R+ GL +GADDY+ KPF+ E++ R+R +LRR A Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 S D+ +D +VT++G + L+ EF LL + + + VL +S I V Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 W+ +F D N ++ V LR KID EP+LI TVRGVGY+L P Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKIDT-KEPRLIHTVRGVGYVLRKP 254 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 126/221 (57%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE + L L AG+ V A NG + + DLII+D+MLPD++G+ Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR A P++ L+A + E ++ GL +G DDY+ KPF+ E+LARV +LRR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 +++ +V DL++D S +V G I L+ EF LL +F+ + VL +S I VWD Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +FD D++ ++ + +R K+ +I T RG GY++ Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMR 249 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 99/225 (44%), Positives = 141/225 (62%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++EDE + + LT G + +A +G +G + + +D+IILD+M+P +NG Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R R+A PIL+LTALGT E+ V GL+ GADDY+ KPF AEL AR+RTL+RRG Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 ---AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + DL++D V++ V R G I LT+ EF LLE+ L + VL R I Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 VWD+NF+ TN +DV + LR KID + + KLI TV G+GY++ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIR 225 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 125/227 (55%), Positives = 174/227 (76%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE +T EYL KGL+E+GFVVD+A+NG +G H+A DYD+IILD+MLP ++GW Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +RS + P+L LTAL + RV+G ELGADDYLVKPFAFAELLAR+R LR + Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLR-QS 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ADL +D++ R+V R TRI LT++EF+LL +R +GEVL R+ IASQVW Sbjct: 119 TSKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +NFD+DTN +DVA++RLR K+D+ F+ KLI TVRG+GY+L+ G+ Sbjct: 179 GVNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPERGR 225 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED++ L + L + + VD AD+G G A + YDL+++D+ LP ++G Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR N PILL+TA + +++GL+ GADDYL KP EL AR+R LLRRG Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S ++ L +D VS +VT + + LT KE++LLE FLR+ V RS I +W Sbjct: 121 VSPT-SILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +++ VK LR ++ I+ V G+GY L Sbjct: 180 TFDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSP 222 Score = 87.5 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 8/124 (6%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL V+D+ L+ L GF + + + D DL+ILDI +P +G ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 VRMLRSANKG------MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 +R+ + +PIL LTA V DDY+VKP EL+ R+ L Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 117 RRGA 120 R Sbjct: 521 ERAR 524 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 148/225 (65%), Gaps = 2/225 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE + ++L +GL+E G+ V+ A++G G+ L + +DL+ILD LP +G Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R R N+ P+L LTA + RV GL+ GADDYL KPFAF ELLARVR LLRR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRR-PG 122 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + AD+ DL +++VTR GT + LT+KEF+LL FFLR+ G+VL R+ I VWD Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 ++D +N ++V VK LR K++ P++IQT+RG GY+LE Sbjct: 183 DSYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLETTSD 226 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ + L LT+AG VD+ +G +G A+T YDLI+LDIMLP +G+D Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 I R LR PIL++TA +V GLELGADDY+ KPF+ E+LARV+ L RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 ++ ++ ++V+ RKVT G + LTSKEF LL F RH G R + Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 +VW + ++ ++ + RLR KI+ D EP+ ++TV GVGY Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+DE + + L GF V A G A DL+ILD+MLPD +G++ Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR+ + ++ LTA ++ GL G DDY+ KPFA EL+ARVR +LRR Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 VIIES-----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 E AD+ +D + V R+ + L+ EF+LL +FL + VL R+ I Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + VWD +FD + +D V LR K+ P LI T RG GY L Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHG-PPLIHTQRGFGYALR 246 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 135/223 (60%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+++ ++ +GL G + +G G + + DL+ILD MLP V+G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +R+ + IL+L+ALG +E R++GL GADDYL KPF F ELLAR+ L RR Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + ADL + L + +V R+ I LT+KE ++LE FLR G + R I + VW Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++ D TN +DV ++RLR KID F LIQT RG+GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYLGD 223 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 140/237 (59%), Gaps = 10/237 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-----GDYD---LIILDI 52 M +L+VED+ + ++L +GL G+ V +A +G++G A + D +I+LD+ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 MLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 MLP + G ++ + LR++ P+L+LTALG ++ RV GL GADDYLVKPF+F ELLAR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RTLLRRGA--AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 LLRR + ++ +D + +V+R G + LT++E LLE FL G VL Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 R I S VW ++ D TN +DV V+RLR KID I TVRG+GY LE + Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEPDPAK 237 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 11/235 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +++V+DE E L L AGF V+ A +G + DLI+LD+MLPD++G+ + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-A 121 R +R P+L LTA + +V GL +G DDY+ KPF+ E++AR+R +LRR Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 V + +V DL ++ S V+R+G I L+ E+ LL + + ++G VL ++ I VW Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 182 MNFDSDTNAIDVAVKRLRGKI----------DNDFEPKLIQTVRGVGYMLEVPDG 226 ++ D ++ + LR K+ + LI+T RG+GYM+ P Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAPKN 248 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 1/228 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ + L K LT+ ++VD+A G G+ L + +YDLIILD++LP+++G Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR+ +P+L +TAL ++ GL GADDY+ KPF ELLARVR LLRRG Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + L +++ SR++T +++LT KE +LE FLR+ + R I +W Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDGQ 227 + + +K LR K+ P LI+TV GVGY L+ + + Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPIETE 228 Score = 76.3 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L V+D+ + + L L + + D L + + DL++LDI +P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + + +R + + +PI+ TA + + G D+ + K + A+LLA + ++R Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 132/221 (59%), Gaps = 2/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 LL+VEDE YL L GF D+ +GL+G A+T +YDLI+LD+MLP+++G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R +PI+++TA G + V GL+ GA+DYL KPFA EL AR+R LLR Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLR-QRES 130 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + V L + +R+V I LT +EF LL + ++++ + + R I + VW Sbjct: 131 KANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGF 190 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F +TN +DV ++ LR KI++D KLI TVRG+GY L Sbjct: 191 DFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ LT L AG+ V A +G A + DLI+LD+MLPD +G+ + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR+ P+L LTA +E R+ GL G DDY+ KPF E+L RVR +LRR A Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 II----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + A L +D + +V +G+ + L+ EF LL FL H VL ++ I + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 VW +F DT +D VK LR K+D+ P L+ TVRGVGY L +P + Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRLPRDE 241 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE K + L + G+ V A NG + DLI+LD M+P+++G + Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--G 119 ++R +R + +PI++LTA ++ G E G DDY+VKPF+ EL AR++T+L+R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + E DL + R+V G + LT EF LLE FL++ G+ R + Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEV 223 ++ ID + LR KI+ D P+ IQTV G+GY L+ Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKP 227 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 1 MK-LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNG 59 MK +L+V+DE L L + F V A +G +A+ +D IILD+MLP ++G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + + +R A PI++LTA ++ GLE+GADDY+ KPF+ E++AR+R + RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 AAVIIESQ------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 I + V DL VD + ++ LT KEF LL +F+ +V R Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVP 224 + + VW ++ ++T +D+ V LR KI++ P ++TVRG GY LE P Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDP 232 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 132/230 (57%), Gaps = 6/230 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ E + + L AGF VD A +G +A T DL++LD+MLP ++G + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 + R LR+ ++ +P+++LTA R+ GLE+GADDY+ KPF+ EL RV+++LRR Sbjct: 117 VFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + L+VD +R TR G + LT +EF LL F LR G R + Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPDGQ 227 VW ++ D + + V ++RLR KI++D P+++ TV GVGY + + Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDPGTPR 284 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE+ + L A F A+NG + D+I++D+M+P ++G+ + Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-AA 121 +R + +PIL LTA G +VKGL+LG DDY+VKPF+ EL+AR+ ++RR Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 L++D RKVT G + LT KEF LL F +H G+V R + +QVW Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++ + +D +K LR K+ IQTV G+GY EV Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQ--ASDFIQTVWGIGYKFEV 224 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VEDE ++T L AG+ V A++G + L DL++LD+MLP ++G + Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R I++LTA G ++ GLELGADDY+VKPF EL+AR++ +LRR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 VIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L +D + K+ ++ + LT E++LL+ F+ + G+ L R + + +W Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVP 224 ++ DT +DV ++RLR KI++ +P+ I+T+ G GY + Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE L AG+ V A G G +A+ + DLI+LD+MLP ++G +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 LR + + IL+LTA RV GL +GADDYL KPF+ EL+ARV +LRR Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 I-IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 S + + +D +R+ +G + LT EF LL R+ VL R + +VW Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F +DV V ++R KI+ LI+T RGVGY Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFVD 225 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 148/223 (66%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++ED+ + +++ KGL EAG +V+ A +G G A +D+I+LD MLP V+G Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R+ P+L+L+ALG ++ R++GL G DDYL KPFA +EL+ARV L RRG Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 A+ ++ + DL +DL+ R VTR+G RI LT +EF +LE+ +R G V+ RS++ VW Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D NFD TN ID V RLR K+D F+ LI+TVRG GY++ Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVRP 223 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LIVED+ LT LT + V++A +G + DYDLI+LD++LP ++G Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +RS N MPILL+T + + GL+ GADDYLVKPF EL+AR+R LLRR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRR-P 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 AV + L +D S + + + LT KEF LLE FLR+ V +I +W Sbjct: 120 AVTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 A+ +K LR K+ P L++TV G+GY L+ Sbjct: 180 SYEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKP 223 Score = 94.0 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+D+ + L L+ G +N L + D++ILD+ LP +NG + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 IVRMLRSANK--GMPILLLTALGTIE--HRVKGLELGADDYLVKPFAFAELLARV 112 + R++R+ + +PIL LT E ++V +GADD++ KP EL+ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQV--FSIGADDFVSKPIVGPELVTRI 509 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L++ED+ T LT+ L+ + VD+A +G +G LA T +YDL +LD+++P ++G Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LRS PI+LLTA + ++ GL+ GADDY++KP L+AR+R LLRR Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRR-K 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S + +L ++L + +V I LT+KE+ LLE FL + + R +I ++W Sbjct: 120 NASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 D+ + +K LR K+ N I+TV G+GY L D Sbjct: 180 DIGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRKAD 224 Score = 69.8 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 26 VVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLTALGT 83 V N + + T +L++LD+ +P NG ++ +++R +PIL L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 IEHRVKGLELGADDYLVK 101 E + GADDY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 62.4 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 +L+++D+ E + +++A + + + +IILD+ +G+ Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP 102 ++ L + +PI++ T ++ R+K LGA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD--VN 58 M++LIVEDEKK +++ L G+ +D+ N GY +A T YD +I+D M+P + Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G D+++ LR P ++LTALG ++ GL+ GADDYL KPFA ELLAR+R +LRR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + +V L +D +R V +I LT+KE+ LL++ ++ G+ L + I Sbjct: 121 PKKAQ-PTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEH 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW+ + D N ++ +K LR KID ++ K I+TVRG+GY LE Sbjct: 180 VWNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 102/232 (43%), Positives = 142/232 (61%), Gaps = 6/232 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD-VNGW 60 +L+VEDE+ +L +GL G+ V +AD G DLIILDIMLP ++G Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R +R+A +GMPIL+LTA + RV GL+ GADDYL+KPFAF ELLARVR LLRR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 A-----VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ ADL +D SR R RI LT++E+ LL F+RH +VL R +I Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +VW +F ++N ++V V LR ++ EP+L+QTVRG GY L +P + Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRLPTEE 237 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 140/227 (61%), Gaps = 6/227 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +LIV+D+ + ++L + L + ++ A+NG YDLI+LDIMLP ++G Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ +R A P+L+LTA G +E RVKGL+ GADDYL KPF+ AEL+AR+R LLRR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ L ++ +SR VT I+LTSKEF++LEF L ++G + R +A VW Sbjct: 126 K--RDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVW 183 Query: 181 DMNFDSD--TNAIDVAVKRLRGKIDNDFE--PKLIQTVRGVGYMLEV 223 FD +N +DV +K LR KI + P +I+T+RG+G++++ Sbjct: 184 GNEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDD 230 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VEDE E + L + GF A++ + + DLI+LD MLP +G Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 IVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 ++ L+ + + +P+++LTA G E RV+GLE GADDY+ KPF+ EL+AR++ ++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + +E ++ L +D S +V + + EF LL FF+ H V R + + V Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W N + +DV ++RLR ++ +++QTVRG GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 12/232 (5%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE L L +A F V A NG + + YD+++LD+MLP+++G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +++ +R P+++LTA T +V GLE+GADDY+ KPF+ E++AR+ +LRR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 VIIESQ-----FQVADLM------VDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 +Q + D+ +D KV+ + + LT KEF L+++ + H+ +VL Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 R + VW ++ + +D+ + LR KI+ + PK ++T+RG GY Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 127/220 (57%), Gaps = 9/220 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE+ +L LT + VD +G +G A++ YDLIILD+MLP +NG +I Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R + PI+++TA +V GL+ GADDY+VKPF ELLAR+R +LRR Sbjct: 64 CRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR---Q 119 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + V ++ KVT +G I LT E+ LL ++ V+ R I + VW Sbjct: 120 PQKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 174 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 N + +TN +DV ++ LR K+ K+I+TVRGVGY++ Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + L LT + VDL ++G G+ + YDL++LDI LP ++G Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LRS N +PILLLTA + +VKGL+ GADDY+VKP AEL AR+R LLRR + Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S +++D + V+ +G + LT KE+ LLE + ++ I ++W Sbjct: 121 -EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 + N + +K LR K+ + I+TV G+GY L Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRL 221 Score = 109 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +++IV+D+ + + L G D+ + + DL++LDI +P +NG + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 IVRMLRSANKG--MPILLLTALGT--IEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 + +++R+ + +P+L +TA I +V + GADDYL KPF +EL R+ L+ Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQV--FQAGADDYLTKPFTGSELATRIVNRLK 614 Query: 118 RGAAVIIES 126 R + + Sbjct: 615 RTQNLATRT 623 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D+ LT L ++VD +G G+ A T DYDL++LD MLP ++G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR G+PILLLT ++++GLE GADDY+VKPF ELLAR+R LLRR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRT- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E +L +D +S +V SG +TLT+KE++LLE FLR +V +++ ++W Sbjct: 120 PHETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 + ++RLR K+ P LI+TV G+GY L+ Sbjct: 180 SSQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 83.6 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 10/128 (7%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++IV+D+ + + + L F + N + L DL++ D+ +P +NG++ Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 IVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKP-----FAFAELLARVR- 113 + R+LRS K +PI+ L+ G + + +GADDY+ KP FA LL R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -TLLRRGA 120 +RR A Sbjct: 629 TADIRRPA 636 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 134/227 (59%), Gaps = 2/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+D++ + L+K L +VVD+A +G +G++ + +Y L+ILDIMLP +NG Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LRS N MP+LLLTA + E +V GL+ GADDYLVKP EL+AR+R LLRR Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA- 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL ++ +++ + + LT KE+ L+E F+R V I +W Sbjct: 120 TISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPDG 226 + + N + +K LR K+ D +PKLI+ V G+GY ++ D Sbjct: 180 SIEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSLDD 226 Score = 88.6 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 8 DEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLR 67 D+ + E L L G V + + + + DL+I+D+ +P NG D+ +++R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 SANKG--MPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + +PIL+LT E R + GADD++ KP EL+AR+ + L R Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 125/219 (57%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 LL+VEDE ++ +GL E G+ V + G G A G DL++LDI LPD++G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR +PIL+LTAL +E RV+GL GADDYL KPFAF ELLAR+ LLRR Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L++D +R T G + LT EF LL F + G+ L R I +VW Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 +FD TN IDV V +R K+D I+TVRG+GY Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ +D+ E + + + A +G + D++ILD+M+P ++G+ Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R +R PI++LTA RV GLELGADDY+ KPF+ E++AR+R ++RR Sbjct: 93 EACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 AVIIES------QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 F L +DL R+V +G +++ KEF LL ++ G V R Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + QVW ++ D IDV +K++R ++D IQTV G+GY V Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPY-DCIQTVWGIGYKFGVDS 261 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 143/226 (63%), Gaps = 4/226 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+K+ + L GL E G+ +A +G G L + + L+I DI+LP ++G+++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-- 120 + +R AN +P+L+LTALG+ + ++ G + GADDY+VKPF F EL AR++ LL+R A Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +V+ + DL +D R+V R G I L+ KE+ LL + +++ V+ R IA + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW+ +FD+ TN IDV + LR KID DFE KLI T G+G++L Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDE 229 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE +T L +A + V DNGL+ + G D +I+D+MLP ++G + Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + +R ++ +PI++LTA + ++ GLELGADDY+ KPF+ ELL+R++ +LRR Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 123 II----ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 I + Q ++ +D V ++ +I LT EF LL + ++ +VL R I + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 VW + T +D+ + LR K++ND P+LI+T+RG GY Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +++V+DEK+ + + L G+ V A+NG+ L DLIILDIM+P+++G + Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-- 120 +R MPI++L+A ++ GL GADDY+ KPF EL+ARV++ LRR Sbjct: 66 CTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124 Query: 121 ----AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 I + ++ +L ++ + +V ++ LT +EF +LE R++G V I Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 +VW F N + V +++LR KI +N +PK ++TV GVGY +E Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 135/227 (59%), Gaps = 1/227 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VEDE++ + GL + GF V+LA +G G DYD I+LD+MLP ++G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R LR+A PIL+LTA E GL LGADDYL KPF++ L+AR+ LLRR A Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + V DL++D R V R T I LT +EF++LE+ +R+ G ++ I VW Sbjct: 121 PARPVN-LVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 +FD + N ++V V LR KID F I+TVRG GY++ D + Sbjct: 180 GADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDEDPR 226 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +++V+DE E L L AGF V+ A +G + + +LI++D+MLPD++G+ + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R +P+L LTA + ++ GL +G DDY+ KPF+ E++AR+R +LRR Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 IIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ +VADL ++ S VTR G I L+ E+ LL + + ++G VL +S I + VW Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 182 MNFDSDTNAIDVAVKRLRGKID-----NDFEPK-----LIQTVRGVGYMLEVP 224 ++ D ++ + LR KID +D + LI+T RG+GYM+ P Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREP 241 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 6/232 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVED+ + L+ L + + V + +G G L G++D +ILD+MLP V+G + Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R R+ + PI++ +A + HR+ GLELGADDYL KPF+ EL+ARV+ LLRR A Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 VIIESQFQVA-----DLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 + +S+ L +D ++R+ + G R+ LT +EF LL FF RH G+V R + Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPDGQ 227 + VW + + ++ + RLR KI+ D EP I TV G GY L P + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 96/222 (43%), Positives = 143/222 (64%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MKLL++ED+ + + KGL EAGF VD NG G A+ G Y I+DIMLP+ +G Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I+ +R+A K P+L+L+A +++ R++GL+ G DDY++KPF+F ELL RV+ L+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +++ + L +DL+ ++V R G +I L +KE+ LL + + G L ++ I +V+ Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 NFD TN +DV V RLR KID F +LIQT+RGVGY+L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLR 222 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 122/224 (54%), Gaps = 1/224 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED++ + L K L G+ V LA +G L LIILD+MLP ++G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LRS N PI++LTA G +V GL LGADDYL KPF ELLAR+ +LRR Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 V DL +D V ++ ++ L+S+EF +LE R G+ + R I +VW Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 183 NFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVPD 225 + ID + RLR K+++ EP+ I TV G GY VP+ Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI ED+ E + L + G+ + A +G L T DL+ILDIM+P ++G+++ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 VR++R MPI+ L+A + ++ GL +GADDY+ KPF ELLARV LRR + Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 123 IIE--------SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 S L +D R VT RI LT KEF +L H +V Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 175 IASQVWDMN-FDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 I QVW ++S N + V ++ LR K+ D + I+TV GVGY + Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE+ ++ L + VD+ +G G A++ YDLI+LD+MLP++NG + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I R +R N+ PI+++TA +V GL+ GADDY+VKPF ELLAR+R +LRR Sbjct: 63 ICRQIR-QNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--- 118 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 ++ + +++D + KVT G + LT E+ LL + ++ VL R I + VW Sbjct: 119 QPQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG 178 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 + + +TN +DV ++ LR K+ + K I+TVRGVGY++ Sbjct: 179 YDTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVVR 219 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 117/223 (52%), Gaps = 1/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ E + + L AG A +G LA+ DL++LD MLP V+G + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R P+L+LTA +HRV+ L GADDYL KPF+ EL+ARV+ LLRR A Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 L+VD +R+V G I L ++EF LL H G V R + +VW Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 +F+ IDV V++LR K++ D P + TV GVGY P Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ +DE++ + L L + G+ A NGL + L++LD+M+P+++G Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +R + +PI+LLTA R+ GL++GADDY+ KPF+ ELLAR+ LRR + Sbjct: 67 ACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 122 --VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 E+ F V L +D+ R V+ G + LT KEF LL F+ + +V R + Q+ Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 W + + +D +K LR K+ IQTV G+GY E Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEA 227 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 2/221 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ EDE ++ +GL E G V + +G G+ + +DL+ILDI++P +NG + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 IVRMLRS-ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + R P+++LTALGT E VKGL+ GADDYLVKPF+F EL AR++ LLRR Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + +Q +L++D +R+ R I LT KE+ LLE+F+ HQG L R + VW Sbjct: 144 -ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVW 202 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D NFD++TN +DV V LR KID DF+ KLI TV G+GY++ Sbjct: 203 DKNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIM 243 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 133/225 (59%), Gaps = 6/225 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE+ + L L + GF + +G + D+++LD+MLP ++G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + LR+ + +P++++TA + +V GLELGADDY+ KP++ EL+AR+R +LRRGA Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 IIES----QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + +D+ V+ +G ITL KEF LLE+ +R+ G VL R + + Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 VW ++ DT +DV VKRLR KI+ D P + TVRG+GY LE Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 9/230 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+V+DE+ + + L GF + + NG + + + +L ILD+MLPD++G+ Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 + + +R N P+++LTA ++ GL LGADDY+ KPF EL+ARV+ LRR Sbjct: 63 TLCQRIRE-NHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 119 ----GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 E + L++D+ + + T + +I+LT KEF++L ++G V+ Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 175 IASQVWDMNFDSDT-NAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 + +VW + +++ N + V ++ LR K+ + PK I+TV GVGY +E Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 143/223 (64%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ +L G + G + A NG++G H A++ YD+I+LDIMLP +G+ Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+L+L+A +++ RVKGL+ GADDYLVKPFAF ELLAR ++L RRG Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 AVIIES-QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 +S Q ++L +DL+ + R+G I L +EF L++ L + V+ ++ I QV Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W FD TN +DV V RLR K+D F+ LI T+RGVGY+L+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLK 223 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 124/235 (52%), Gaps = 12/235 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM---TGDYDLIILDIMLPDVNG 59 +++VEDE++ + + L E G V++ +G + DLI+LD+MLP+V+G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR- 118 +I R +R + PIL+LTA T RV GLELGADDYL KPF+ EL ARV +LRR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 ------GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 ++ DL +D +SR+VT G + LT+KEF LL + G V R Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEVPDG 226 + +VW ++ +D + RLR K+ P + I T+ GVGY E P Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYERPRD 237 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED++ + + L ++V++A + G +DL+ILD+ LP ++G Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R +PIL+LTA T +V GL+ GADDY+VKPF ELLARVR LLRR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRR-K 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L++D KVT + + LT KE+ +LE LRH +L RS I W Sbjct: 120 PLPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYMLEV 223 ++ + V ++ LR K+ P LI+TV G GY L Sbjct: 180 PLDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNP 223 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DEKK + L L + F +++A +G + DLIILD+MLP+++G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R +K PIL+LTA GT E +V G GADDYLVKPF+ ELLAR++ +LRR Sbjct: 64 VCQKIR-QDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 VIIESQF---QVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +++ Q L + KV +G LT EF +L +R+ G+V R +A + Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 V + + ID +K +R K+ N + +LI TV GVGY E Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFE 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ L+ L G+ V A +G G A+ DL++LD+MLP++NG+++ Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR---G 119 ++ LR + P+++L+A G ++ GL LGADDY+VKPF ELLAR++ +LRR Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 A D+ VD+ +R V R+ T + LT++EF LL FL H G R + S Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 W +++ +D +++LR K + D E P+ TVRG+GY E Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE+ + + L + + ADNG DL+ILD+MLP ++G++ Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + R +R +K +PIL+L+A G I + G LGADDYLVKPF+ EL RV+ LLRR Sbjct: 66 VCRTIRETSK-VPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 120 -----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + V ++ +L ++ S +V G + LT KEF LL F H +V R Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 + + +W + +DT+ I V +++LR KI+ D P+ IQTV G+GY Sbjct: 185 LFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+D++ E + GF V D+G + D++ILDIMLP +G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR+ +PI++LTA G RV GLE+GADDY+ KPF+ EL+AR++ +LRR A Sbjct: 66 LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 122 VIIES--QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + Q + L + RKV +T +EF LL ++ V R + V Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 W ++ D +DV ++RLR K+ + + +QTV GVGY P Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPH-EYLQTVWGVGYKFTPP 228 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI+EDE L L G+ V A +G G M DL++LD+M+P ++G+ Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + LR +PIL+LTA G IE RV GL+ GADDYLVKPF+ ELLARVR +LRR Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 VIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + ++ +D+V + R + T+KE+ +L GE + R VW Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 T +D + LR KI++D E P+ I+TV GVGY LE Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 136/226 (60%), Gaps = 7/226 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE + ++ KGL GFV +A + LA+ G +DL+ILD+ LP +G Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR + +PI++LTA I ++ E GADDYL KPF F ELL RV+ LR Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 VI---IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 V ES + ++++DL +RKV + L+++EFTL E F RH G+VL R + + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW ++D +N +DV V LR K+ N +LI+TVRG+GY L++P Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN----ELIETVRGMGYRLKLP 224 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL++EDE L+ LT G+ V + D+G GY A+ D+DLI+LD+MLP +NG++ Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LRS P+++LTA E V+GL+ GADDY+ KPF AELLARV +LRR Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 --------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 SQ + L + +VT +G ITL KEF +L + R G V+ R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + VW ++ +DV V LR K++ D + I ++RGVGY L Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ E L L G+ +G D+++LD+MLP NG Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + +R+ + +PI++LTA G V+GLE GADDY+ KPF EL+ARVR LRRG Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ + D+ +D+ + +VTR G I LT EF LL R +V R L+ QVW Sbjct: 136 GQAEN-LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG 194 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 +DT ++V V+RLR KI+ D E P+++ TVRGVGY P Sbjct: 195 YRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYKAGPP 238 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + E + L V A +GL DL++LD+M+P ++GW Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 ++ +R + +P+++LTA G + RV+GL +GADDY+ KPF EL ARV+ +LRR A Sbjct: 68 LQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 123 IIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + + L + R +G + LT KEF LL H G+V R + ++W Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML-EVPDGQ 227 +F D +D +K LR K+ LI TV GVGY EVPD Q Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRFAEVPDAQ 231 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D+ + L + L + +VVD+A +G + YD IILD+ LPD+ G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + + LR PIL+LTA + +VK L GADDY+VKPF F EL AR+R LRR Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRA-LRRRD 145 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q DL VD + +V + +T KE+T+LE FLRH +V I +W Sbjct: 146 NNTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLW 205 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYMLEV 223 +A+ VK LR K+ PK IQTV G+GY L+ Sbjct: 206 SFEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKA 249 Score = 83.2 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 2/125 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K++ ++D+ + L L+ GF +N + + DL+++D+ +P+ NG + Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 IVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 I R+LR+ + +PIL L+ + + +GADD++ K EL R+ L+R Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 AAVII 124 + Sbjct: 633 GRAVP 637 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 1 MK---LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV 57 MK +LI +DE + + + L + G+ V A +G H+ T DL++LDIM+P + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 NGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 +G+++ R +R+ + MPI+ L+A + +V GL LGADDY+ KPF EL+ARV LR Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 R------GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 R +S +V +++D R V G +I LT KEF +L H +V Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 I QVW ++ N + V ++ LR K+ D KLI+TV GVGY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 137/227 (60%), Gaps = 3/227 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+ ED+ LT L G+ V+ +G + AM YDLI+LD+MLP +G+D Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + + LR + G+PIL+LTA G + +V GL+ GADDYL KPF ELLAR+ LLRR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + FQ+ + VD +VTR+G +TL+++E+ LL + + H GE + R + +QV Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVPD 225 W + +DT +DV V LR K++ + + P+ +QTVRG+GY L + Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 3/221 (1%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+V+D+ E L AGF V A +G D+++LD+MLP+++G+ ++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 RMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG--AA 121 +R +P+++LTALG E R+ GL+ GADDYL+KPF+ EL++RVR +LRR A Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + L+VD+ R+V + LT +EF LL F H +V R + +VW Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 ++FD D+ +DV V RLR K+ P + ++TV G GY Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 5/224 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE+ + L L + GF + +G D+++LD+MLP ++G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-- 120 + LR+ + +P++++TA + +V GLELGADDY+ KP++ EL+AR+R +LRRG Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + + + + +D+ V+ +G ITL KEF LLE+ +R+ G VL R + +V Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 W ++ DT +DV VKRLR KI+ D P + TVRG+GY LE Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 125/228 (54%), Gaps = 9/228 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI++DEK+ + L L G V A NG G A DLI+LDIM+PD++G++ Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDIDGYE 61 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R PI+ L+A + R+KG LG DDY+VKPF+ ELLAR+ LRR Sbjct: 62 VCRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 122 ------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ +DL SR+V G I LT KEF +LE H G+V + I Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLE 222 +VW + + DT + +K +R KI+N D + + I+TV G+GY E Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 3/225 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE K ++ L G++VD +G G A+ G YDLIILD+MLP +NG + Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++R LR + +P+++LTA I +V GL++GA+DY+ KPFA ELLAR+R + + + Sbjct: 65 VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 VIIESQFQ--VADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ L +D+ VT + I LT KEF LL++ + ++ L R I +V Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 W ++ DTN +DV ++ LR KID+ F K I T+RG+GY Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRYE 228 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L++EDE L+ LT+ G+ + D+G G A+ ++DLIILDIMLP +NG++ Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LR PI++LTA E V+GL+ GADDY+ KPF AELLARV +LRR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 ------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 E V DL + +V +G + L KEF +L + ++ G V+ R + Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + VW ++ +DV V LR K++ + I+++RGVGY L Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKL 228 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + L L + GF V A +G ++A DL++LD+M+P++ G++ Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 +R + P+++LTA ++ GLELGADDY+ KPF EL+AR+R +LRR Sbjct: 64 LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122 Query: 123 I-IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + AD+++D R V G + LT EF +L + G+V R + +V Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 F+ IDV ++ LR KI+ D P+ I+TV G+GY +P Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFALP 226 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDEKK + L+K L + GF V LA +GL + DLI+LD+MLP ++GW++ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 ++ +R N PI++LTA ++ GLELGADDY+ KPF+ EL R++ +LRR Sbjct: 65 MKKIRQKNN-TPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + +++L ++ + T + LT EF +L + G+V R I +V+ Sbjct: 124 EQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYMLEVPD 225 ++ ID + LR KI+ + ++ I+TV G+GY L + Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAEE 227 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 133/234 (56%), Gaps = 9/234 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD-YDLIILDIMLPDVNG 59 +++L+V+DE E L L G+ V++A +G +G A + DLI+LD LPD +G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 DI + +RS+ PIL+LT I RVK L+ G DDYLVKPF+ EL+AR+R + RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 AA--------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLP 171 + V L ++ +R V RSG +I L+ KE+ LL F +R G+VL Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 172 RSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 RS I VW +F D N +DV ++ LR K++N P LI TVRGVG++L Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFILRDES 245 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL+V+DE+ LT L G+ V A G D DLI+LD+ LPD+ G++ Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R LR +P+L LT LG ++ RV+GL++G DD++ KPF E+ ARVR LLRR Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 ---VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 ++ + + +D + +V + + LT+ EF LL + + + G VL R I + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW+ + + +D + LR K+ + LI+TVRGVGY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQ-SLIRTVRGVGYQL 248 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++EDE ++ L+ F + +A +G G LA+ ++D+I+LD+MLP ++G Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +RS K PI++LTA +I RV GL+ GADDY+ KPFA ELLAR+R + RR Sbjct: 89 VCQKIRSVKK-TPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 VI--IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + L+V + R VT++ + LT +E+ LL F+++ VLPR ++ V Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W +TN +DV V+ LR KID E I TVRG+GY++ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMR 250 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 139/223 (62%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED+ ++L G + G V + +G++G H A+T D+D+IILDIMLP +G+ Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ LR P+++L+A ++E RV+GL+ GADDYLVKPFAF ELLAR +TL+RRG Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 AVIIESQ-FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ L +DL+ + R I + +EF L++ L + V+ ++ I V Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W FD TN +DV V RLR K+D F LI T+RGVGY+L+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 2/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL++EDE L +GL + G+ VD A +G G LA +YDLIILD+ LP ++G Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+ R LR+ + IL+LTA E RV GL+ GADDYL+KPF F ELLAR+R LLRR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + Q DL +D ++ V + R+ LT KEF +L + +RHQGEV+ + ++ VW Sbjct: 121 R-VRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEP-KLIQTVRGVGYML 221 D + TN + V + LR K+ + P + I+TV GVGY L Sbjct: 180 DGTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LI+EDEK + + L + + NG + +D +ILD+MLPD++G + Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I + +R + +PIL+LTA R+ GL++GADDY+ KPF+ EL+ARVR ++RR Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 VIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 +++ + DL VDL + + + LT+ EF LL F+++ G+V R + + Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 V ++ IDV +K LR KI+ ++ K I TV GVGY Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYY-KYIVTVYGVGYRF 227 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + E L L + VD+ +G G A +G YD +LD+MLP +G+ Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + LR +PIL+LTA G I +V+GL+ GADDY+ KPFA ELLAR+R+L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 +V E+ D+ +DL + ++ G RI L+ KEF ++ + V + + S+VW Sbjct: 121 SVEFET-LSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + + N ++ V LR K+ I T+RG GY L Sbjct: 180 GYDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+DE + + GF V +G + YDL+ILDI LP ++G+ Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 ++R +R+ P+++LTA RV GLELGADDY+VKPF+ EL+ARVR LLRR Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 120 ----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 I ++ + L +D R+ T ++TL KEF LL + H G+V R ++ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYML 221 QVW + D +DV ++RLR K+ + D E LIQT G+GY Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 1/226 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+ E + + + G++ +A +G G D I LDIMLP ++GW++ Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA-A 121 + +R NK +PI++LT G + ++KGL++GADDY+VKPF EL+AR++ ++RR Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + + L+VD K IT+ KE LL + + +V R + Q+W Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 F+ D IDV +KR+R K+ I+T+RGVGY + + Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEKEHE 233 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + +L +GL G+ + A +G G LA GD+ LI+LDIMLP +NG Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ + LR +PI++LTA+ + +KGL LGADDY+ KPFA+ ELLAR+ + RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 AVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 I + + L D S V+ I+LT KE +LE + + G+ L R I S V Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYML 221 W M D TN +DV + +LR K+ +I+T RG+GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE + L++ G+ + A NG + LIILD+M+P+++GW+ Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + +R N +PIL+LTA +VKGL++GADDYL KPF EL+ARV LLRR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 Q +L +D+ KV + LT KEF LL+ L + +V R + ++ Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPD 225 W ++F D +D +K +R K+ + +I+TV GVGY L+ D Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEID 230 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+DE + + L + LT G++VD+ NG +G LA T YDL+ILD MLP+ G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +I + LR K +P+L LTA T++ RV+GL+ G DDYLVKPF ELLARVR LLRR + Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + I + V DL +D+ ++ R G I L+ KE LL++F+ + ++L I Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +W ++N I ++ LR KI+ E LI TV G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 96/236 (40%), Positives = 131/236 (55%), Gaps = 12/236 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE L L G+ V A +G G DL++LD+++P ++G Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR+A+ +P+L+LTA RV GL+ GADDYL KPF ELLARVR LLRRGA Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALT 135 Query: 123 II------------ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVL 170 + + DL +D ++R+VTR+G I LT E+ LLE FL H + L Sbjct: 136 GEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQAL 195 Query: 171 PRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 R I VW +F+ +N++DV V +R K + D P+L+QTVRGVGY L G Sbjct: 196 TREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYALRTASG 251 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 136/221 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI+ED+ T YL +G D A +G G HLA YDLI+LD MLP ++G Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LRS+ P+L+L+AL ++ RVKGL G DDY+ KPFAFAELL RV L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ V L ++L++R VT + + L KEF LL++ + H +V+ R+L+ VW Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 D +FD TN IDV + +LR K + P++I+TVRG GY L Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVED+ + + L + G+ ++ A +GL +Y ++I+DIM+P ++G + Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR--- 118 +R +R +K +PI++L+A G ++ GL +GADDY+VKPF+ EL+ARV+ +RR Sbjct: 65 SMRRIREKSK-VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 ++ ++ D+ D+ + VT+ G +TLT+KE +L+ F + V + I Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 VW F SD N + V ++RLR KI++D PKLI+TV G+GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED + + GLT+ +VVDLA +G G A+ +YDLI+LDI LP ++ Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR A PI+LL+A T + V GL+ GADDY++KP L ARVR LLRR Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q +L +D + +VT G + L+ KE+ LL + + + I ++W Sbjct: 121 -DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + VK LR K+ +I+TV G GY L+ Sbjct: 180 TFGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+ +VEDE+ L L GF VD G DL+ILD MLP V+G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63 Query: 62 IVRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + R LR + +PI++LTA G RV+GL GADDY+VKPF+ EL+ARV+ +LRR Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ + + D+ +D + +V R + L EF LLEF + G V RS + V Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 W + D +DV V RLR ++ P +I+TVRG GY LE Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 132/222 (59%), Gaps = 4/222 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ E + L AGF+V+ A +G A DLI+LD MLP ++G + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +RS +PI+LLTA+G+ + R+ GLE GADDY+ KPF+ EL+ RV+++LRR Sbjct: 101 VCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 122 V-IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E+ F + + +D + + R+G + LT++EF LL F L+H G+ R + VW Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYML 221 F D + + V V+RLR KI+ D P ++ TV GVGY L Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 135/223 (60%), Gaps = 5/223 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LL+VED+ LT LT+AG+VVD A +G G+ L T YD ++LDI LP ++G Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ R + MP+L+LTA +V+G + GADDY+ KPF E+LAR+R LLRR A Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 +++D + +V+ G + LTS E+ LL + + H G V+ R+ + ++D Sbjct: 150 HAQSE-LTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 +FD D+N I+V V R+R K+D D +IQTVRG+GY+L P Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLDVD----IIQTVRGLGYLLTPP 247 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 111/223 (49%), Positives = 158/223 (70%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE K YL KGL E+G+ + GL G + YDL+ILD+MLPD+ GW Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++LR +K +P++ LTA + RVKGLELGADDYL KPF++ ELLAR+++LLRR Sbjct: 61 SVLQVLRQFSK-IPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR-Q 118 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + E++ ++DL +DLV KV R+G I L+ EF LL + L ++ +++ R I S+VW Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++NFD+DTN IDVAV+RLR KID +EPKLI T+RG+GY + V Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKISV 221 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE + L L A + V A + + L + DLI+LD MLP +G ++ Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 63 VRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 R L+ +PI++LTA G +++V+GLE+GADDY+ KPF+ EL+AR++ +LRR Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ I QV L +D +S +VT S + + E+ LLEFFL HQ V R+ + VW Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N + +DV ++RLR + + + IQTVRG GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 135/234 (57%), Gaps = 9/234 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG-DYDLIILDIMLPDVN- 58 MK+LI+ED+ + + + + L EAG+ +A + +G YDL++LD+MLP ++ Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 G + R +R + +PIL+LTAL + +V+GL+ GADDYLVKPF ELLARV Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 RTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 R LLRR V + +D +R R G RI LT+KEF +LE+ +R+ G ++ Sbjct: 121 RALLRRSPQAQAP-VLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSS 179 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 + + WD N++ +N + ++ LR K+ EP +I+T RG GY++E + Sbjct: 180 TELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQSEP 233 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 1 MK--LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVN 58 MK + +VED+ + L AGF V G + +L +LDIM+P + Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 59 GWDIVRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116 G +I R +R + P++ LTA + ++ GL+LGADDY+ KPF+ EL+AR++ +L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 117 RRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 RR + + D+++D + +T G +T T+ EF LLE+ RH G V R + Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 VW ++DV V+R+R KI+ + E P+ ++TVRG GY EVP Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEVP 229 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +K+LIVED+++ + L + G+ +G ++ L+ILDIMLP V G+ Sbjct: 5 IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 ++++ +R P+L+L+A ++ GL LGADDYL KPF EL ARV+ LRR Sbjct: 65 EVLQKIREKGN-TPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYL 123 Query: 120 ----AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + ++ +++ + +V +TLT+KEF +L+ FL++ +V ++ + Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 +W N+ +D N + V ++RLR KI+ D P IQT+ G+GY L Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L++ED+ + + LT+ G V A +G G L G D++++D+MLPD++G++ Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 R LR ++ +PI+++TA V GLE GADDY+ KPF EL AR+R LLRR Sbjct: 80 CCRRLRRSS-DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + DL + + V R+G + LT EF LL V R + +V Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEV 223 W ++ D +DV V+RLR KI+ D P+++ TVRG+GY ++ Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 123/227 (54%), Gaps = 2/227 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE+ + + LT F V A + L DL++LD MLPD +G + Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-AA 121 + LR+ + MP++LLTA V GLE GADDY+ KPF+ EL AR + LLRR +A Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + L +DL SR+V ++LT+KEF LL F RH +V R+ + VW Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 182 MNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLEVPDGQ 227 FD + ++ + RLRGK+ + +L+QTV GVGY +P Q Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTLPSMQ 249 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE + L L+ G+ V A +G +L D++ILDIM+P ++G+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + +PI++LTALG + R+ GLELGADDY+VKPF+ EL AR+R +LRR Sbjct: 76 VCQEIRKDS-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134 Query: 122 VIIESQFQVAD------LMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 S + L +DL R++ + RI LT EF+LLE + G+ R+ I Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 176 ASQVWDM--NFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 +VW DT +DV + RLR K++ D P LI T RG GY+ + Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+ED+ L G+ V A++G G LA+ LI+LD+MLP VNG++I Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR MPI++LTA G V GL+LGADDY+ KPF+ ELLARV LRR Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR-QRK 125 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + + D D +R + R+G + L+ KEF LL F + + G L R I S VW Sbjct: 126 QTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGY 185 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVP 224 + +ID V LR KI+ D EP++++TVR GY E+P Sbjct: 186 DSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFELP 228 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 141/223 (63%), Gaps = 1/223 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLP-DVNGW 60 + LI+ED+ Y+ +GL + G V + +G+ G +A+ +D+IILD MLP +G Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LRS K P+L+L+AL + RV+GL+ G DDYL KPFAF+EL AR+ L+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ++ADL ++L++R R+G + L +EF LL F ++H +++ R+++ VW Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D FD TN IDV + RLRGK+D FEP LI TVRGVGY L Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSD 253 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 9/226 (3%) Query: 1 MK--LLIVEDEKKTGEYLTKGLTEAG-FVVDLADNGLNGYHLAMTGDYDLIILDIMLPDV 57 MK ++I+ED+ + + L + G F V + G G + +LI+LDI LP + Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 NGWDIVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTL 115 NG++I R LR A +PI++LTA ++ GL LGADDY+ KPF+ EL+AR+ + Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 LRR S + L +D V G I LT KEF LL+ + +G VL R + Sbjct: 121 LRRTEGTP-SSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYL 179 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +VW +++D +T +DV ++R+R K+ D I+T G+GY Sbjct: 180 LDRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+LI++DEK + L K + GF V +A +G + +G +D IILD+MLP ++G Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG- 119 + +R + + I++LTA ++ GLELGADDY+ KPF EL+AR+RTL+RR Sbjct: 77 TLCNRIRQQS-DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 120 AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + ++Q DLMVD+ SR V R I LT KEF +L +R++G V R I V Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDN-DFEPKLIQTVRGVGYMLE 222 W DT IDV VK LR K+ + + +I+T GVGY Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFR 238 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 114/227 (50%), Gaps = 7/227 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE E + LT AG+ V+ A + ++IILD MLP +G Sbjct: 4 RILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQ 63 Query: 62 IVRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 + LR K +PIL+LTA +V GL+ GADDY+ KPF+ EL+ARVR +LRR Sbjct: 64 FAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQ 123 Query: 120 AAVIIESQFQVADLMVDLVSRKVT-----RSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + V L +D S +V I L EF LL+FF+ + V R+ Sbjct: 124 MPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRAS 183 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + +VW + +DV +KRLR + + I+TVRG GY + Sbjct: 184 LLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRI 230 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI +D+ + + ++ L + G+ V A +G LA T D++I+DIM+P ++G + Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + + +PI++L+A + ++ G ++G DDY KPF+ AEL RV+ +LRR AV Sbjct: 66 SQKI-KMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 123 IIE---SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + + ++ +R V G +TLT+KEF +L H ++ R + Q+ Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEVP 224 W+ +F+ D + + V ++RLR KI+ D P+LI+TV GVGY E P Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 10/235 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 +++LIV+D+KK +T LT G+ V A +G+ G + +G + +ILD+M+P ++G+ Sbjct: 11 IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ LR + +P+L+LTA+G R+ GLE+GADDYL K F+ ELLAR+R + RR Sbjct: 71 EMLKQLRKQS-DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 121 --------AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 + + ++ +L + L +R SG + LT E+ LL + VL R Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEVPDG 226 + V ++D ++DV + LR K+ D P+ IQTVR VGYM PD Sbjct: 190 DQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDPDA 244 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +LI +D + L + V +A +G + + +++LD+M+P +G++ Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + R +R+ + +P++L+TA G ++ GL++GADDY+VKPF+ +E++AR+R +LRR Sbjct: 63 VCRKIRAKS-DVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121 Query: 122 ----VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 E+ +A+L ++L + GT+I+LT KE + + +V R + Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYMLEVPDG 226 +W ++ D+ +D +KRLR K+D P I+T+ GVGY EV + Sbjct: 182 SLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVDED 231 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 111/221 (50%), Positives = 162/221 (73%), Gaps = 3/221 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L++ED ++T E++T+GL+EAG+V+D +G +G +LA+ DY LIILDIMLP ++GW Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ LR+A P++ LTA +++ RV+GL+ GA+DYLVKPF+F+ELLARVR LR+ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + S +++ L +D VS V+R ITLT KEF LL GE++PR++IAS++W Sbjct: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +NFDSDTN +DVA++RLR K+D+ F KLI T+RG+GY Sbjct: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE + + + GF V A +G + DL ILDIM+P ++G + Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R + PI+LLTA E ++ G ELGADDY+ KPF+ LLA+ + LLRR + Sbjct: 65 CRNIREVSN-TPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 123 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 ++ L ++ +S +V +G + L+ KE+ LL + ++G L R I VW Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 183 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 ++ D +D +KRLR K+ + I TVRG GY EV Sbjct: 184 DYFGDIRTVDTNIKRLREKL--LDKANYIATVRGSGYKFEV 222 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+ ED+ K +L KGL EAG+ VDLA +G LA +YD I DIM+P +G Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++R LR K P +LLTA +E RV+GL+ GADDYL KPF+ ELLAR+R +LRR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + V+DL +DLVS R I+LT++EF+LLE + + +S I +VW Sbjct: 121 PEMN-NLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 D ++D+ TN + V +K LR KID + EP LIQT RG+GY + Sbjct: 180 DQSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIRD 222 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 L+VED + + L +G+ E GF VD+A +G + YD+++LD+MLP V+G ++ Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 RMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP-FAFAELLARVRTLLRRGAAV 122 + R++ +L+LTA +V GL+ GADDYL K EL AR+R L+RRG Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ- 120 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + + DL +D +R V R+G I LT +E+ LLEF H+G+V+ RS+I ++D Sbjct: 121 QKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 ++ +N +DV ++ LR K+D +F+P+LI T G GYML D Sbjct: 181 YDENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLRGEDD 224 >UniRef50_C3QD36 Two-component system response regulator n=8 Tax=Bacteroides RepID=C3QD36_9BACE Length = 228 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 139/223 (62%), Gaps = 2/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LI+EDE + L GL E G+ +A +GL G L T +DL+I DI+LP ++G+++ Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + +R N +PIL+LTALG+ ++ G + GADDY+VKPF F EL AR++ LL+R Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123 Query: 123 II--ESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + ADL +DL + V R+G I L+ KE+ LL + + + VL R IA +VW Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + +FD+ TN IDV + LR KID DFEPKLI T G+G++L Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFILTD 226 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED E + + L + F VD A NG +G LA+ YD I+LD+M+P ++G+ Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ +R P+L LTA ++E RVKGL+ G DDY+VKPF EL AR+R LLRR Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + + + + + V G + L+ K++ LLE+ +++ G++L R I +VW Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + D+ ++V V LR K++ K IQTVRG+GY+L+ Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKE 231 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+++ G +LTKGL E G+ V+ A +G L G +DL ILD+MLPD++G+ Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +++R P+L+L+ALG + ++K L+LGADDYL KP F ELL+R+ L RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 AV-IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ ADL V+L + V R+G I L++KEF L + + +Q +VL RS I V Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W N D+ TN +DV + LR KID DF KLI+TV+G GYM+ Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMI 222 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 139/223 (62%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K LIVED++ E L KG GF VD+A +G A T YD+IILD+++P ++G Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + +PI++LTA +E +++GLE GADDY+ KPF+F EL+ RV+T+LRR Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 V E + + DL +DL KV G I LT KEF LL+ ++ + + R ++ ++VW Sbjct: 123 VQ-EEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWG 181 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 + D D+N +DV +K +R K++ D PKLI T+RG GYML Sbjct: 182 IASDYDSNIVDVYIKNIRNKLE-DKPPKLILTIRGRGYMLSTE 223 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE+ + + L + GF V A +G + + + LI+LD+MLP + G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + +R+ + +PI++LTA + +++G+ +GADDYL KPF+ EL+ RVR LLRR Sbjct: 66 VCNRIRAVS-SVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR 124 Query: 122 VIIE--SQFQV--ADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 DL VD+ V + G + LT+ EF +L FL + +V R + Sbjct: 125 DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVE 184 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKID-NDFEPKLIQTVRGVGYMLEVPDGQ 227 + + N++ +D +K +R KI+ N EP I TV G+GY +G+ Sbjct: 185 KAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSNGE 235 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 9/221 (4%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE E + + L G + +G YDLIILDIMLP ++G+++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 + P + L+A ++ R+KG +GADDYL KPF ELLARV +LRR Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 S F+ ++ +D S +V +G + T KE+ LLE + ++ L R + VW Sbjct: 120 A--SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGY 177 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F+ DT +DV +++LR K++ + I+TV +GY LEV Sbjct: 178 DFEGDTRTVDVHIQKLRKKLEWE---DRIKTVYKLGYRLEV 215 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE + L +GLT+ G V LA +G G LA + +D I+LD+ LPD++G+ Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-- 118 ++ LR MPI+++TA I R++GL+ GADDYL KPFAF ELLAR+ + RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ---GAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 G V + + V DL D + +TR+GT + LT KE +L + G V+ R+ I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW M D TN ++V + RLR K+ P +++ VRG GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALG-PPVVENVRGFGYRL 225 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 136/222 (61%), Gaps = 6/222 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ L L E + VD A +G G+ A+ +YD+I+LD+MLP ++GW Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + ++ LR P+L+LTA ++ RVKGL GADDYL KPF ELLAR+R L+RR A Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + DL +D +RKV G + +T++E+TL+E+ HQGEV+ R+ + ++ Sbjct: 131 GQP-QPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLF 189 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 D + + +N +DV V LR K+ P+LI T RG GY +E Sbjct: 190 DEDDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 6/229 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LI+ED++ E L + + V A +G G ++ + L++LDI+LP + G++ Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 I + +R ++ PI+ L+ I +VKGL+ GADDYL KPF F EL AR++ LRR Sbjct: 64 ICQKIRMLSEA-PIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKM 122 Query: 121 ---AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + F +L +DL S V G +++L +KE LL + ++ V I Sbjct: 123 NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYD 182 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVPD 225 Q+W ++ D + V + LR KI +N +PKLI+TVRG GY D Sbjct: 183 QIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTAD 231 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDE E L L AG A + + D++++D MLP ++G + Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66 Query: 63 VRMLR--SANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 R LR + K +PI++LTA +V+GL+ GADDY+ KPF+ ELLAR+R +LRR A Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSG-----TRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 + Q Q+ L VD SR+ I L EF LL + + H V R + Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +VW + + +DV +KRLR + ++++TVRG GY Sbjct: 187 LDKVWGDHVFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRFTA 234 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+ EDE ++ L AG+ V A+NG +D+++LDIM+P+V+G+ Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG-- 119 + RS ++ + I++LTA E +V GL +GADDY+ KPF+ AELLAR+++LLRR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + +DL +++V ++G + +T E+ LL F++++ +V+ R + Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLEVP 224 VW N+ D +DV ++RLR KI +N EP+ I+T+ G GY Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 + ++ED++ E LT + GF V NG + D+++LD+M+P+V+G + Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 VRMLRSANK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++RS + +P+++LTA T ++ GLELGADDY+ KPF+F ELLARV+ LLRR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 A---VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + + +++ DL + +VT G + LT+ +F LL + QG+VL R I Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 VW + D IDV +K+LR + I+T+RGVGY E Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWECE 228 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+V+DE+ ++++ L +AG+ VD A+NG ++ YDL +LDIM+P +NG+++ Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR+ P+L L+A + +V GLE+GADDYL KPF EL+ARVR LLRRG Sbjct: 68 CRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMD 126 Query: 123 IIE---SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + +D I LT +EF LL ++ G+V R + + Sbjct: 127 AEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREA 186 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLEV 223 W + ++T +D +KRLR K+ +P +I+TVRG GY Sbjct: 187 WGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED+ LT L AG+ V AD G A G DLI+LD+ LPD++G+ + Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG--- 119 R LR+ P+L LTA +E R+ GL G DDY+ KPF E+L R+R +LRR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 120 -AAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + + DL +D + +V R+G I L+ EF LL L V+ + I S+ Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 VW +F D +D V+ LR KID FEP+LIQTVRGVGY L Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDR-FEPQLIQTVRGVGYCL 236 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+ L++E++ + K L E G++VD+ +G G+ YDL++++ LP +NG Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+ + +R +PILLLT + V LE G DD+L+KPF+ EL AR+R LLR Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLR-SP 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + L +D +SR+VT ++L+ KE++LLE FLR+ VL ++ I +W Sbjct: 120 RQANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + + +KRLR K+ K+I+TV GVGY L+ Sbjct: 180 SFESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRLKP 222 Score = 98.6 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 13/133 (9%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L V+D+ T L + L G V D+ + +L+ILD+ +P NG ++ Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589 Query: 63 VRMLRSAN--KGMPILLLTALGT---IEHRVKGLELGADDYLVKPFAFAELLARV----- 112 + +R+ +PIL L+A I+ + GADDY+ KPFA AEL+ R+ Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDI---YQAGADDYISKPFAEAELITRIFNRLD 646 Query: 113 RTLLRRGAAVIIE 125 R L R A Sbjct: 647 RIHLLRSLAETDP 659 Score = 62.4 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPD-VNG- 59 ++L+++D+ + E L + +D+ + DL++LD++ PD +G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 WDIVRMLRSANKGMPILLLTALGTIEHR 87 + ++ L+ +P+L+ T + R Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDR 491 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 144/221 (65%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VEDE++ G+++ K LTE + L + +D ++LD+ LPD +G Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D++R R++ P+L+L+A + RV+GL +GADDYL KPF+ E++ARVR+LLRR A Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 V + + +DL+ R VT +G + LTS+E+ LLE FL++ VL R+LIA +VW Sbjct: 165 GVKT-TVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVW 223 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + ++D +TN IDV V+RLR K++ +P LI+T+RG GY L Sbjct: 224 EASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 134/221 (60%), Gaps = 5/221 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVEDEK L + L +GFV DL +G L T YD IILD+ LP +G Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++ RS P+L+LTA G + +++GL GADDYL KPF AEL+ARV+ L+RR A Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 S ++ + +D+ + +V GT I LT+ EF +L + ++H+G+V+ RS + ++ Sbjct: 121 GN-ASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +FD D+N ++V + R+R K LI+TVRG+GY + Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRI 216 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+VED+ K + + + L GF V A+ G +G ++G +D++I+D MLP+++G Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 ++ LR P+L+L+AL ++ RV GL+ G DDYL KPFA EL AR+ L+RR Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRR-PN 154 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 E+ V L +DL+ R VTR G I L +EF LLE+ +R +VL R+++ VW+ Sbjct: 155 NTRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWN 214 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 F TN +DV + +LR KID+ LIQ++RG G+ML VP+ Sbjct: 215 YRFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRVPE 258 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIV+DE++ L L + G+ V A++G G L +DL+ILD+MLP +GW Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+R + P+++LTA E V G E+GADDY+ KPF LLARV++LLR+ Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 ++ ES ++ DL+++ S V+ S I L KE+ LL + +++ L R + ++VW Sbjct: 127 MV-ESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWG 185 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +F D ID +K LR KI + I+T+RG+GY L+ Sbjct: 186 YDFLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKLD 222 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 140/225 (62%), Gaps = 3/225 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VED+++ +L KGL+EAG+ + LAD+G L T D+D+I++DIMLP ++G Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +++R PIL+L+AL + + ++K L++GADDYL KPF F EL++R++ L RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 121 --AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 + ++ +D KVT++ I + E+ L F + ++ +VL R+ I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 VW ++FD+ TN +DV + +R KID E K+I TV+G GY+++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDE-TEQKIIHTVKGTGYLIKD 224 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+V+D++K L +GL E G+ V+ A + + L+ILD MLP +G Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + R LR PIL+LTA I R+ GL+ GADDYL KPF F ELLA VR LLRR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + DL++D +R VTR+G R+ LT KE+ +L + H GE++ R+ +A +W Sbjct: 120 -LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIW 178 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 + + N IDV +K LR K+D LIQTVRG G+ + Sbjct: 179 HADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRISP 221 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 12/234 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VED E L + L+ G+ V A +G L DL+ILD MLP ++G ++ Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA- 121 +R +R P+L+LTA V GLELGADDYL KPF EL+ARVR LLRR Sbjct: 68 LRTIRQTK-STPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRI 126 Query: 122 --------VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 + DL++D V + LT EF +L+ LR+ G R+ Sbjct: 127 QQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRN 186 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 + +W ++ ++D A+ RLR K+ + + I+TV G+GY L+ + Sbjct: 187 YLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA--IETVWGLGYRLQAEAPR 238 >UniRef50_C8W041 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W041_DESAS Length = 384 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+D++ +Y++ GL G+ V A G + L D +ILD MLPD+ G D+ Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR + I+++T RV GL GADDY+VKPF FAELLAR+ LRR + Sbjct: 226 CRRLRELINPV-IIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTSS 284 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 + AD+ + R+ R + LT EF LL F+RH +VLP+ +I Q+W Sbjct: 285 PEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWGH 344 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 NF D N ++V + LR K+ P LI TVRGVGY+ E Sbjct: 345 NFTGDLNIVEVYIGYLRRKLQK---PSLIHTVRGVGYLFE 381 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 3/220 (1%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 + +L+V+DE+ E++ GL + GF++ A +G LA + +IILDIMLP +NG+ Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ ++ I++LTA I+ RVKGL+LGADDY++KPF+F ELLAR+ LR Sbjct: 208 EVCSEIKKWVNAS-IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + + + ++ + ++ + L+ E+ LL++ L + G VL + I +VW Sbjct: 267 PELND-VMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVW 325 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYM 220 +F+ D N ++V ++ LR KI D E +I+TVRGVGY Sbjct: 326 GFDFNGDVNIVEVYIRYLRDKIG-DNEHSIIRTVRGVGYK 364 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 96/222 (43%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L +ED++ T + L GF VD NG +G A++ DYD+I LD MLP V+G Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ +RS P+L+L+ALG ++ RV+GL G DDYL KPF E+ AR+ LLRR A Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 VIIE--SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + V L +DL+SRKV R G I L E+ +LEF +RH G+ + R ++ V Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W +FD TN IDV + RLR KID +I+TVRG GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 134/224 (59%), Positives = 166/224 (74%), Gaps = 1/224 (0%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++LIVEDE+KTG YL +GL E G+ DL +NG +G A G YDLIILD+MLP ++GW Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 I+ LR + P+L LTA + +VKGLELGADDYL+KPF F EL+ARVRTLLRR + Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + +AD+ VD+V R V RSG +I LT KE+ LLE L+ GEVLPRSLI+S VW+ Sbjct: 123 QAA-TVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 MNFDSDTN IDVAV+RLR KID+DFEPKLI TVRG GY+LE+ + Sbjct: 182 MNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIRE 225 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVEDEK + + + + G AD+G++ + + DL+ILD+M+P ++G+ + Sbjct: 23 VLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFSV 82 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 ++ R + MPI++LTA G + ++KG E GADDY+ KPF+ LLA+ LLRR + Sbjct: 83 CKLAREMSN-MPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 123 IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDM 182 +++ V +MV S KV G ITLT KE+ LL F + + G++ R + +++W Sbjct: 142 PLDA-LNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWGY 200 Query: 183 NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +F+ T +D +K LR K+ ++ K I T+ GY EV Sbjct: 201 DFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 239 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L+VED+ K G + L++ V+ + YDL ILD M+ +G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +R++N PIL+LTA I+ RV GL GADDYL+KPFAF EL AR+ L RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 ++ E + A + +D ++ +V R G +TLT KEF LL+FFLRH +VL R I + V Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 W ++ NA+D A+K LR K+D F KLI VRGVGY L Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 3/221 (1%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIV+DE E + L AG+ A+N + + + DLI+LD MLP +G ++ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 63 VRMLRSA--NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 R L+ +PI++LTA G +++++GLE+GADDY+ KPF+ EL+AR++ +LRR Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E+ +V L++D +S +VT G + E+ LL+FF+ HQ R + QVW Sbjct: 126 PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 N + +DV ++RLR + +E L+QTVRG GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+D+ + + F V A++ N + DLI+LDIMLPD +G Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 D+++ L+ + +P++ LTA + + GLELGADDY+ KPF L+AR++ + RR Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + ++ D+ +D+ S + + G + L KEF LL+ + + G+V R I +V Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDGQ 227 W M+F D +DV + +LR KI ++F I+TVRGVGY L +P+ + Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGSEF----IKTVRGVGYKLVIPEDE 224 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED++ + + L + GFVV +G+ + YDL++LD+MLP ++G+ Sbjct: 5 KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQ 64 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R + PI++LTA G +E +VKGL +GADDY+ KPF ELLAR+ +LRR Sbjct: 65 VCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 VIIE------SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 E ++ + +L+ D+ + + + I + +E LL++ + + +V R + Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183 Query: 176 ASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKL-IQTVRGVGYMLEVP 224 +W +F+ + ID+ +KRLR ++ + + I+TV G+GY EV Sbjct: 184 IEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 138/232 (59%), Gaps = 10/232 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 +L+VEDE+K ++ L G+ V A NG +A++GD+ LI+LDIMLP +NG + Sbjct: 10 HILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLE 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL----- 116 ++R L K P++LLTA + +V GL+ GA DY+ KPFA ELLAR+R L Sbjct: 70 VLRRL-QQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128 Query: 117 -RRGAAVIIES---QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 RR A E ++ L + +VT GT I LT++EF +L+ L +Q VL R Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 ++ ++V ++ +TN +DV ++ LR KID F+ K+IQTVRGVGY+++ Sbjct: 189 EVLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVIKSE 240 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+VED++K + L L + A +G ++DL+ILD+ LP +G+ Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR-GA 120 +++ +++ + +P+++LTA G ++ G LG DDYL KPF+ AEL+ R++ +LRR Sbjct: 63 VLKEIKNR-EDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + + V+L +R+V ++G + LTSKE+ LLE ++ + + I ++W Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222 F D N + V V+RLR KI+ D P++I+TV GVGY E Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAE 224 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LIVED+ + + L L E G+ D+ +G +G A GDYD+IILD+MLP ++G+ Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +V LR + +P+LLLTA + ++ GL+ GADDY+ KPFA AELLA +R L RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRR-Q 119 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 ++ + DL+++L S + I L+ KEF+L + + + G+V+ + ++ ++VW Sbjct: 120 GEVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVW 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 + ++ N ++ V LR K+ I+T+R GY Sbjct: 180 GVESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIV+DE ++ + G+ V A NG D D+I+LDIM+P+++G+ Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYC-DKDIDIILLDIMMPNIDGFQ 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + +R PI+ L+A + ++KGL +G DDY+VKPF+ EL ARV+ LRR Sbjct: 63 VCQKIRDK-VSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 VI--IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 + S+ L +D+ SRKV I T+KEF ++E H +V + I +V Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 180 WDMNFDSDTNAIDVAVKRLRGK-IDNDFEPKLIQTVRGVGYMLEV 223 W + + D N + +K++R K I + I TV GVGY E+ Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEI 226 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 ++L+V+D+ + + + L AG+ V+LA +G L DL++LD+MLP V G + Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 + R LR +P+++LTALG RV GLE GADDY+VKPF+ EL+ RV ++LRR Sbjct: 70 VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 121 -AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQV 179 L +DL +R+ T G + LT +EF LL F LRH G R+ + QV Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 180 WDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLEV 223 W +F D + + V ++RLR K++ D P I TV GVGY + Sbjct: 189 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 KL++VED+KK L L G+ V ++GL+ + +L+ILDIMLPD++G++ Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + + LR + IL+LTALG + ++ G E GADDYL KPF ELLAR++ LLRR Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 I + + L + R V +G + L+ EF LL + +++ V+ + I VW Sbjct: 126 SISQP-IKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWG 184 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML 221 +++ N ++V V +R K+ P+LI+T+RGVGY L Sbjct: 185 IDYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWD 61 +++VED+ + L A F V G +A L+++D+MLPD++G++ Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 + L++ +P+L L+A G ++ R++GL GADDYL KPF+ EL+AR+R +LRR Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 122 VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 + S L +D +R+VT G I L+ E+ LL F LR+ G + R+ I VWD Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206 Query: 182 MNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 FD ++ ++ + LR K+D P LI TVRGVGY L Sbjct: 207 YGFDGESTVVETFISSLRKKVDTAP-PTLIHTVRGVGYRLSEE 248 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 132/219 (60%), Gaps = 5/219 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED++ GE + L G+ VD +G + H ++L+ILD+ LP ++G Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++++ LR+A +P+L+LTA R+ GL+ GADDYLVKPF AEL AR+R LLRR Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 E + +++D V+++V+ GT I L KEF LL L G VL R + ++ Sbjct: 136 NRP-EPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLY 194 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGY 219 + D ++NA++V + LR K F P+LI+TVRGVGY Sbjct: 195 GWDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGY 229 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M +L++ED++ + + L F V +G +GYH G Y L+++D+MLP ++G+ Sbjct: 1 MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 + +R+++ +PI++++A T +V+ LGADDY+ KPF+ EL ARV+ +RR Sbjct: 61 ALCEKIRASS-EVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119 Query: 121 A--VIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQ 178 E + Q D+ +D+ R+V G +I+LT+KEF LL F H G V + + + Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179 Query: 179 VWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 VW+ + D+ + V VK +R K+ + PK I+TV GVGY Sbjct: 180 VWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M+LL+VED+ E L + L +A + +D+A +G G YD I+D+ LP ++G Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ LR PIL+LTA + +V+GL+ GADDYL KPF EL+AR++ L+RR A Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Q ++ S ++ ++L+ E+ L E+F+ H GEV +S++ ++ Sbjct: 121 GK-SSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIY 179 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPDG 226 D +FD D+N I+V ++RLR K+D + + LI+T+RG GY L+ D Sbjct: 180 DQDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLKPLDN 225 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+L+V+DE L LT G+ V A NG + L++LD+M+P ++G+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA- 120 + + LR + +PI++LTALG + R+ GLE+GADDY+VKPF+ EL AR+R++LRR Sbjct: 67 VCQELRKES-DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125 Query: 121 -----AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLI 175 V + L +D R+V ++ R+ LT EF+LLE + GE R+ I Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 176 ASQVWDM--NFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYMLE 222 +VW DT +DV + RLR K+++D P LI T RG GY+ + Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+VED+ +T L G+ V A +G A D+IILDIM+P +NG+ Sbjct: 1 MKVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGY 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ R L + + +LLLT I +V GLELGADDY+ KPF E+LARV+ L RR Sbjct: 61 EVFRKL-NQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSH 119 Query: 121 ------AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSL 174 + I + ++ L ++ SR V G + LT KEF LL + +V R + Sbjct: 120 FTTFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKV 179 Query: 175 IASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYML--EVPDGQ 227 + +VWD+++ T +D+ ++RLR K+ LIQT+ G+GY + PD + Sbjct: 180 LLKKVWDIHYAGGTRTVDIHIQRLRKKLGR--WHGLIQTINGIGYKFISKPPDNE 232 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 133/225 (59%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++LI+EDE E L++ L + + VDL +G +G A++ YDLI+LDIMLP ++G Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 I++ +R P++LLTA G I +V GL+ GADDYL KPFA ELLAR+R + RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 VI++ + D+ ++ + K+++ + LT KE LL F + + LI ++W Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVPD 225 + D + N ++V + LR K+ +I T+RGVGY+LEV Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVKS 225 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 120/233 (51%), Gaps = 13/233 (5%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +L+VEDE+K L L + F V A+ + G DL+ILD+M+P ++GW Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R +R + +PIL LTA G RV G ELGADDY++KPF+ EL+ RV+ LLRR ++ Sbjct: 67 CRKIREFS-EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSST 125 Query: 123 IIESQ----------FQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPR 172 + +L + RK G ++L+ E+ LL + ++ G VL R Sbjct: 126 PPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185 Query: 173 SLIASQVWDMNFDSDTNAIDVAVKRLRGKIDN--DFEPKLIQTVRGVGYMLEV 223 L+ +VW F D+ +D V+RLR K+ + TVRG GY EV Sbjct: 186 DLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEV 238 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 138/224 (61%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 M++L+VED+ + ++ KG + G++ +++ +G +G T +D ++D+MLP ++G Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 ++ +R + I++L+A ++E +V+ L GADDYL KPFA +ELLARV ++RR + Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 + + A + +DL++ R G RI L +EF LLE +R++G L + + ++W Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEVP 224 D +FD TN +DV V RLR K+D F+ KLI T+RG+GY+ Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVFRPE 230 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM---TGDYDLIILDIMLPDVN 58 ++L+V+DE + + L + L G VD+A G + + L YDL++LD MLP ++ Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 G + + +R ++ PIL LTA T++ RV+GL+ GADDYLVKPF ELLARVR LLRR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 GAAVIIE-SQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 A + Q+ DL +D ++ R G I L+ KEF LLE+F+ H G++L I Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 +VW +N + V+ LR ++ P+LI V G GY Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRFGP 228 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 MK+L+V+DE + L G+ V A +G G D++ILD+MLPD +G+ Sbjct: 19 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 77 Query: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 +++R+ R ++ +P+L+LTA + ++ GL+LGADDY+ KPF +AEL+ RV+ + RR Sbjct: 78 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137 Query: 121 AVI---IESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 + ++ + RKV SG I LT +EF L + F+ + V R + Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197 Query: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLE 222 +VW + +T A+D+ V+RLR K+ N E I+T+ GVGY L+ Sbjct: 198 KVWGFEYIGNTRAVDIMVQRLRKKLGNSGE--YIKTIYGVGYKLD 240 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 K+LIVEDE + + L GF V +A +G + +++L ILDIMLPD++G + Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 +++ +R P+++LTA +V LGADDY+VKPF+ EL ARV+ +LRR Sbjct: 63 VLQYIRRKTSK-PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 122 V--------IIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRS 173 E+ L ++ + +V G I+L +KEFTLL++ V+ + Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 174 LIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFE-PKLIQTVRGVGYML 221 I VW F D N + V + RLR KI+ D P+ +QTVRG+GY L Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 8/226 (3%) Query: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDI 62 +LIVED+ + + L + + V+ ++GL+ A D+DLI+LD+ +P +NG ++ Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 63 VRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAV 122 R LR PI+++TA +V GLE+GADDY+ KPF+ EL AR + ++RR A Sbjct: 70 CRELRKTKN-TPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 123 IIES------QFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIA 176 ++ + DL V++ R+VT G +I L+ KEF LL + G RS + Sbjct: 129 NQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELL 188 Query: 177 SQVWDMNFDSDTNAIDVAVKRLRGKIDND-FEPKLIQTVRGVGYML 221 +W NF + ++ + RLR KI+ D P I T G+GY Sbjct: 189 DVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.221 0.866 Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,428,843,156 Number of Sequences: 3077464 Number of extensions: 184368775 Number of successful extensions: 512332 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 37440 Number of HSP's successfully gapped in prelim test: 13944 Number of HSP's that attempted gapping in prelim test: 402304 Number of HSP's gapped (non-prelim): 60169 length of query: 227 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 103 effective length of database: 658,790,820 effective search space: 67855454460 effective search space used: 67855454460 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 92 (39.3 bits)