18/01/2012 02:09:14 : INFO  : Run start: Wed Jan 18 02:09:12 GMT 2012
18/01/2012 02:09:25 : INFO  : Initialised job
18/01/2012 02:09:28 : INFO  : Renaming log file 'phyre2_20120118_020911.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/phyre_20120118_020911.log'
18/01/2012 02:09:31 : INFO  : Initialised job:
Sequence
>batch____
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIM
TQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAA
LKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMVA
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
DPKIRY

18/01/2012 02:09:33 : INFO  : Checked sequence
18/01/2012 02:09:40 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 02:09:42 : INFO  : PSI-BLAST 3 iterations
18/01/2012 02:12:35 : INFO  : PSI-BLAST 5 iterations
18/01/2012 02:16:33 : INFO  : Finished PSI-BLAST
18/01/2012 02:16:38 : INFO  : Running Buildali to generate a3m file
18/01/2012 03:04:27 : INFO  : Converting to HMM
18/01/2012 03:04:36 : INFO  : Calibrating HMM
18/01/2012 03:04:59 : INFO  : Searching HMM database
18/01/2012 03:10:36 : INFO  : Finished buildali
18/01/2012 03:10:39 : INFO  : Predicting secondary structure
18/01/2012 03:10:55 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 03:10:58 : INFO  : Predicting Disordered regions
18/01/2012 03:11:06 : INFO  : Predicted Disorder (Disopred)
18/01/2012 03:11:10 : INFO  : Running memsat_svm check
18/01/2012 03:14:58 : INFO  : Globular protein
18/01/2012 03:15:00 : INFO  : Predicted Transmembrane (memsat_svm) ID '902dc12a6339784c'
18/01/2012 03:15:03 : INFO  : Initialising fold library search
18/01/2012 03:15:10 : INFO  : Initialised search input
18/01/2012 03:15:14 : INFO  : Building Ensemble models
18/01/2012 03:15:21 : INFO  : Building hh.d3dhwa1.model.1.pdb
18/01/2012 03:15:51 : INFO  : Building hh.c3d31D_.model.2.pdb
18/01/2012 03:16:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/hh.c3d31D_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/c3d31D_.2.pdb
18/01/2012 03:16:23 : INFO  : Building hh.d3d31c1.model.3.pdb
18/01/2012 03:16:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/hh.d3d31c1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/d3d31c1.3.pdb
18/01/2012 03:16:55 : INFO  : Building hh.d2onkc1.model.4.pdb
18/01/2012 03:17:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/hh.d2onkc1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/d2onkc1.4.pdb
18/01/2012 03:17:28 : INFO  : Building hh.c2onkC_.model.5.pdb
18/01/2012 03:17:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/hh.c2onkC_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/c2onkC_.5.pdb
18/01/2012 03:17:58 : INFO  : Building hh.c3fh6F_.model.6.pdb
18/01/2012 03:18:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/hh.c3fh6F_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/902dc12a6339784c/c3fh6F_.8.pdb
18/01/2012 03:18:28 : INFO  : Building d3dhwa1.1.pdb
18/01/2012 03:18:57 : INFO  : Building c3d31D_.2.pdb
18/01/2012 03:19:24 : INFO  : Building d3d31c1.3.pdb
18/01/2012 03:19:51 : INFO  : Building d2onkc1.4.pdb
18/01/2012 03:20:19 : INFO  : Building c2onkC_.5.pdb
18/01/2012 03:20:48 : INFO  : Building d2r6gf2.6.pdb
18/01/2012 03:21:17 : INFO  : Building c2r6gF_.7.pdb
18/01/2012 03:21:44 : INFO  : Building c3fh6F_.8.pdb
18/01/2012 03:22:12 : INFO  : Building d2r6gg1.9.pdb
18/01/2012 03:22:41 : INFO  : Building d1ntca_.10.pdb
18/01/2012 03:23:10 : INFO  : Building c1wz4A_.11.pdb
18/01/2012 03:23:40 : INFO  : Building c1umqA_.12.pdb
18/01/2012 03:24:07 : INFO  : Building d1umqa_.13.pdb
18/01/2012 03:24:35 : INFO  : Building d1n0ua5.14.pdb
18/01/2012 03:25:04 : INFO  : Building d1fipa_.15.pdb
18/01/2012 03:25:33 : INFO  : Building d1etob_.16.pdb
18/01/2012 03:26:01 : INFO  : Building c2cw1A_.17.pdb
18/01/2012 03:26:27 : INFO  : Building c3e7lD_.18.pdb
18/01/2012 03:26:56 : INFO  : Building c2ka1A_.19.pdb
18/01/2012 03:27:24 : INFO  : Building c2ka2B_.20.pdb
18/01/2012 03:30:54 : INFO  : Finished HH model building
18/01/2012 03:30:57 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 03:32:28 : INFO  : html domain output complete ID '902dc12a6339784c'
18/01/2012 04:04:02 : INFO  : Run end  : Wed Jan 18 04:04:00 GMT 2012
