195 d2hoxa1 Probab=99.79   E-value=4.1e-16  Score=120.22  Aligned_columns=330  Identities=12%

Q ss_pred             CCEEEECCC-CCCCCHHHHHHHHHH---HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCH
Q ss_conf             822600788-878998999999999---8620366765323345888999999999999999807399-87799974824
Q batch____         2 AQIFNFSSG-PAMLPAEVLKQAQQE---LRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS-NYKVLFCHGGG   76 (362)
Q Consensus         2 ~~~~~f~~G-p~~~p~~V~ea~~~~---l~~~~~~~~~~~~~~hr~~~~~~~~~~~r~~la~~~g~~~-~~~vi~~tgsa   76 (362)
                      ..+.+-++| |+-+++.-++.....   ..-|+..++.....++..   .+.+++..+++.+..|.+. +..-+++|+|+
T Consensus        56 ~~~~~~~~gdp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~---~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~  132 (425)
T d2hoxa1          56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFI---SFELEKTIKELHEVVGNAAAKDRYIVFGVGV  132 (425)
T ss_dssp             TCCEECCSCCCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTC---CHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred             CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHCCCCCCCCEEEEECCH
T ss_conf             5543466788554636641142100011245554565456643445---2899999999988508867887769994688


Q ss_pred             HHHHHHHHHHHCCCCCE--------EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEEEEE
Q ss_conf             89999999751147976--------9999258157799999998199638996288887784788984022788189987
Q batch____        77 RGQFAAVPLNILGDKTT--------ADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHY  148 (362)
Q Consensus        77 t~a~~~~~~~~~~~gd~--------v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  148 (362)
                      ++++.+++..+.++||.        +++....+....-.  +...+.....+.      ++.+.+++.+.+++++++++.
T Consensus       133 ~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~--~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~i~~  204 (425)
T d2hoxa1         133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ--TKYFDKKGYVWA------GNAANYVNVSNPEQYIEMVTS  204 (425)
T ss_dssp             HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH--HHHSCCTTEEEE------EEGGGGTTCSCGGGEEEEEES
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH--HHHCCCCCCCCC------CCHHHHHHHCCCCCEEEEECC
T ss_conf             999999999864888612356774357300237789999--985599744424------798899972488857999817


Q ss_pred             ECCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCC--CCCCCCCCEECHHHCCCCCCC--EEEEEEC-HHHHHCCCCCCC
Q ss_conf             01475102313016874399699996010133232--112112210010210256668--0899998-888810161433
Q batch____       149 CPNETIDGIAIDETPDFGADVVVAADFSSTILSRP--IDVSRYGVIYAGAQKNIGPAG--LTIVIVR-EDLLGKANIACP  223 (362)
Q Consensus       149 ~~~~tg~~~~~~~i~~~~~~~~~~vD~a~~~g~~~--~~~~~~d~~~~s~~k~~gp~G--~G~l~~~-~~~~~~~~~~~~  223 (362)
                      +||+||+..+     +..|+.+++.|.++......  ......++.+.|..|.++-+|  +|++++. +++.+++.....
T Consensus       205 P~NPtG~v~~-----a~~~~~~~i~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~  279 (425)
T d2hoxa1         205 PNNPEGLLRH-----AVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT  279 (425)
T ss_dssp             SCTTTCCCCC-----CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEE-----EEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf             8888560654-----23239689971432343323333456854999815510123323101899689899999998641


Q ss_pred             CCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
Q ss_conf             7532011134680205788379999999999999743---------1588999999999999999874895572378220
Q batch____       224 SILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANG---------GVAEMDKINQQKAELLYGVIDNSDFYRNDVAKAN  294 (362)
Q Consensus       224 ~~~~~~~~~~~~~~~~t~~~~~i~~l~~al~~~~~~~---------g~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~  294 (362)
                      .            ....++.....+...+++......         -++...+...+..+.+.+.|++.+.+.+...+..
T Consensus       280 ~------------~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~  347 (425)
T d2hoxa1         280 K------------NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS  347 (425)
T ss_dssp             H------------HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC
T ss_pred             C------------CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             0------------5777368999999999602013456555548999999999999999999999863576300345655


Q ss_pred             ----------CCCCEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCC---CEEEEECCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             ----------3663799993688998999999985894984487867---579998179989999999999999999862
Q batch____       295 ----------RSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVV---GGMRASIYNAMPLEGVKALTDFMVEFERRH  361 (362)
Q Consensus       295 ----------~s~~~v~f~~~~~~~~~~~~~~l~~~gi~~~~G~~~~---g~iRiS~~~~~t~edv~~lv~~l~e~~~~~  361 (362)
                                ...+...+.--....++.+..++.++||.+++|..+.   +.+|||+..  |+||++.+++.|+++.+..
T Consensus       348 ~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~--~~e~ld~~l~rL~~~v~~~  425 (425)
T d2hoxa1         348 EYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKDMVKAK  425 (425)
T ss_dssp             EEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHCC
T ss_conf             43221001377876169986789808999999996694997170238988659999139--9899999999999987269