BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (134 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 137 7e-32 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 123 2e-27 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 117 1e-25 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 117 1e-25 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 116 2e-25 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 116 2e-25 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 115 4e-25 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 113 2e-24 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 113 2e-24 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 113 2e-24 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 112 4e-24 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 111 7e-24 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 111 8e-24 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 109 2e-23 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 108 7e-23 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 107 8e-23 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 107 9e-23 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 102 4e-21 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 102 5e-21 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 101 8e-21 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 100 1e-20 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 99 5e-20 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 99 6e-20 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 98 7e-20 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 93 2e-18 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 93 3e-18 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 93 3e-18 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 90 2e-17 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 89 4e-17 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 87 2e-16 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 85 6e-16 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 84 2e-15 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 83 2e-15 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 82 5e-15 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 79 4e-14 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 78 8e-14 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 77 2e-13 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 76 3e-13 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 76 4e-13 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 76 4e-13 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 76 5e-13 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 75 6e-13 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 75 6e-13 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 75 8e-13 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 75 8e-13 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 75 8e-13 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 74 1e-12 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 74 1e-12 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 74 1e-12 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 74 1e-12 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 74 2e-12 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 73 2e-12 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 73 3e-12 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 73 3e-12 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 73 3e-12 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 72 4e-12 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 72 5e-12 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 72 6e-12 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 72 6e-12 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 72 7e-12 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 72 7e-12 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 71 8e-12 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 71 8e-12 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 71 1e-11 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 71 1e-11 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 71 1e-11 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 71 2e-11 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 71 2e-11 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 70 2e-11 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 70 2e-11 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 70 2e-11 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 70 3e-11 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 69 3e-11 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 69 5e-11 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 69 5e-11 UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 68 7e-11 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 68 7e-11 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 68 7e-11 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 68 8e-11 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 68 9e-11 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 68 9e-11 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 68 1e-10 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 67 1e-10 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 67 2e-10 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 67 2e-10 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 67 2e-10 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 66 5e-10 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 66 5e-10 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 65 6e-10 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 65 6e-10 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 65 6e-10 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 65 7e-10 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 65 7e-10 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 65 8e-10 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 65 9e-10 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 65 9e-10 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 65 9e-10 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 64 1e-09 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 64 2e-09 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 63 2e-09 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 63 3e-09 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 63 3e-09 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 62 4e-09 UniRef50_B1FNZ3 Histone family protein nucleoid-structuring prot... 62 5e-09 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 62 5e-09 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 62 6e-09 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 62 7e-09 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 62 7e-09 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 62 7e-09 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 62 7e-09 UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 62 8e-09 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 61 9e-09 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 61 9e-09 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 61 1e-08 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 61 1e-08 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 61 1e-08 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 61 1e-08 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 61 2e-08 UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS4... 61 2e-08 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 60 2e-08 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 60 2e-08 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 60 3e-08 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 60 3e-08 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 59 4e-08 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 59 4e-08 UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodo... 59 5e-08 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 58 7e-08 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 58 7e-08 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 58 9e-08 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 58 9e-08 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 57 1e-07 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 57 2e-07 UniRef50_B1FTJ8 Histone family protein nucleoid-structuring prot... 57 2e-07 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 56 3e-07 UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia... 56 3e-07 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 56 3e-07 UniRef50_B2T963 Histone family protein nucleoid-structuring prot... 56 4e-07 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 56 4e-07 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 56 5e-07 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 56 6e-07 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 56 6e-07 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 55 7e-07 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 55 9e-07 UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n... 54 1e-06 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 54 1e-06 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 54 1e-06 UniRef50_B1KCF0 Histone family protein nucleoid-structuring prot... 54 1e-06 UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriav... 54 2e-06 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 54 2e-06 UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkhol... 53 2e-06 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 53 3e-06 UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n... 53 3e-06 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 52 4e-06 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 52 4e-06 UniRef50_B2TE45 Histone family protein nucleoid-structuring prot... 52 4e-06 UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n... 52 6e-06 UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n... 52 8e-06 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 51 9e-06 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 51 1e-05 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 51 2e-05 UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkhol... 50 2e-05 UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenel... 50 2e-05 UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia a... 50 2e-05 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 50 2e-05 UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkh... 50 3e-05 UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptoth... 48 8e-05 UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2... 47 2e-04 UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia... 46 4e-04 UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodoba... 46 4e-04 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 46 4e-04 UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthom... 45 8e-04 UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkhol... 44 0.002 UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnoba... 43 0.004 UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkh... 43 0.004 UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralston... 41 0.010 UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax... 40 0.021 UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkhol... 40 0.031 UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnific... 39 0.061 UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n... 38 0.082 UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthe... 38 0.084 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 137 bits (346), Expect = 7e-32, Method: Composition-based stats. Identities = 65/134 (48%), Positives = 92/134 (68%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++L N+R+LRA++RE +++ LEE LEK + V ER+E E +++ +LAE+Q K+ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ++M GI PE+LL SA + +KR PRPAKYKF D GE KTWTGQGRTP + Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 QALAEGKSLDDFLI 134 L GK L++FLI Sbjct: 160 AQLDAGKKLEEFLI 173 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 113/134 (84%), Positives = 122/134 (91%), Gaps = 1/134 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M++MLQ+LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE QQR+LAE+QEKI+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +LELMKADGINPEEL SA PR+ KKRQPRPAKY+FTD NGE KTWTGQGRTPKPIA Sbjct: 61 FLELMKADGINPEELFAMDSA-MPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 QALAEGKSLDDFLI 134 QALA GKSLDDFLI Sbjct: 120 QALAAGKSLDDFLI 133 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 67/131 (51%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + L+NIR+LRA ARE + L + +EK V ER +E +++QR + E + + Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 M G++P L +S + R P KY+ D +G T W+G+G+ P AL Sbjct: 70 YMVELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAAL 129 Query: 124 AEGKSLDDFLI 134 G++ DD LI Sbjct: 130 DAGRNKDDLLI 140 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 117 bits (292), Expect = 1e-25, Method: Composition-based stats. Identities = 59/134 (44%), Positives = 87/134 (64%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +L++L +IR LR +EF++ LE +LEKF+++T ERR+ E+ QR+ ER E+I+ Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + L+ DG+ +L+ + + R KK PR AKY++TD NG+ KTWTGQGR P + Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 QALAEGKSLDDFLI 134 L GK+L DF I Sbjct: 121 AELNTGKTLADFEI 134 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++++LNN+R LR+MA+E SI+ LE ++EKF++V +E++ EE + +R ER+ ++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + EL+K DGI +EL + A KR P AKYK+ + NGE KTWTGQGR PK I Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 QALAEGKSLDDFLI 134 L GKSL DF I Sbjct: 121 LQLNAGKSLSDFAI 134 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L L + R +A +E S+D L E K + ER+EEE+ + AER +I+ Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++ G++ E+L G+ +++ A KR PRP KY+ T V+GE WTGQGR P Sbjct: 61 ILAQIENSGLSIEDL-GDVTSSVKTAKTKRAPRPPKYQIT-VDGELIQWTGQGRMPTVFK 118 Query: 121 QALAEGKSLDDFLI 134 Q + GK++ +FLI Sbjct: 119 QQVDSGKNMSEFLI 132 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 85/134 (63%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ELM+ +GI PEEL KR PRPAKY F D NGE KTWTGQGRTP+PI Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 QALAEGKSLDDFLI 134 AL +GKSL DF I Sbjct: 121 NALNKGKSLSDFEI 134 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ L+ L NIR+LRA R+ + L+E+ EKF V +E+ + E Q E Q+K++ Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 WLELMKADGINPEELL---GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + EL+ +G++PE+LL G ++ A A KR PRPAKY++ V GE +TWTGQGR P Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 PIAQALAEGKSLDDFLI 134 IA A+A G+SLD FLI Sbjct: 120 QIAAAIASGESLDAFLI 136 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 1/132 (0%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L+NIR+LRA ARE ++L++M +KF V +E RE+ E++ +E +R + L Sbjct: 6 NVRKVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELL 65 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 E++ ++G + EEL G S + R + Q PAKY+F +VNGE + WTG+GR PK I +A Sbjct: 66 EMIASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEA 124 Query: 123 LAEGKSLDDFLI 134 +A GK LDDFLI Sbjct: 125 IAAGKKLDDFLI 136 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 1/135 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE E+ ER K+ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + E++ ADGI+P ELL + +A KR RPAKY + D NGETKTWTGQGRTP I Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 QALAE-GKSLDDFLI 134 +A+ E GKSLDDFLI Sbjct: 121 KAMDEQGKSLDDFLI 135 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 112 bits (279), Expect = 4e-24, Method: Composition-based stats. Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 2/130 (1%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 Q LN IR +RA ARE +++EE+ EK + + R+E + + + +ER EK+ + E+ Sbjct: 9 FQGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREM 68 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 + DGI+P +L + +A R PRPAKY++TD +G KTWTGQGRTP +A ALA Sbjct: 69 LLQDGIDPADLADSELPRKQKAS--RAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANALA 126 Query: 125 EGKSLDDFLI 134 GK ++DFLI Sbjct: 127 AGKKIEDFLI 136 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 111 bits (277), Expect = 7e-24, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+A +E ++ LE + KF V +RREEE ++QR+ +Q+KI Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 WLELMKADGINPEELLGNSSAA---APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + M GI ++L KKR P+P KY++TD NGE +TWTGQGR PK Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 PIAQALAEGKSLDDFLI 134 + A+ GKSL+ FLI Sbjct: 121 AMKTAVDNGKSLEAFLI 137 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++ N R+LRA +E S++ LEE+L KF + +R+E + + +Q K++ Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 WLELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L +K +GI+PEEL+G +S+A + KR PRPAKY + D NGETKTWTGQGR P P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IAQALAEGKSLDDFLI 134 + + + E S++++LI Sbjct: 120 LQEVMNEKGSIEEYLI 135 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ L +LR + S+ LE+++ V+T+++R EEE E+ KI + Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M+ G++ +L+ A K KY+ D G W+G+GRTP Sbjct: 61 IRQSMQDAGVDINDLMSLIGETAAPKKK----VQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 QALAEGKSLDDFLI 134 +G + DD LI Sbjct: 117 AYFDKGFTKDDCLI 130 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+ +E S++ LE + +K + R+ +E +QQ E+ EK++ Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++A G++ +L + A ++ K + RP KY D G WTG GR PK Sbjct: 61 ILAQLEAAGLDVNDL--QKAEPAKKSTKVGKKRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 QALAEGKSLDDFL 133 L GKSLD +L Sbjct: 119 AELDNGKSLDSYL 131 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 107 bits (268), Expect = 8e-23, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 86/130 (66%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+SL NIR+LRA+A++ +++ L+ + EK ++ E+ EE +Q++ E ++ E ++ + E+ Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +K DG++ +EL + + K PRPAKYKF D NG KTWTGQGRTPK + AL Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EGKSLDDFLI 134 GK L+DF I Sbjct: 124 SGKKLEDFAI 133 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L++ N+R+L A R+ SI+ LE L+K + ++R+E ++ L + K+ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + +LM+ DGI+P E S + +K P P KY++ D E KTW+G GRTP+ I Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGNVK--QKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 QAL-AEGKSLDDFLI 134 A+ EGKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 102 bits (253), Expect = 4e-21, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L NIRT+R RE L E EK V +ER+ E E +Q EL +++ K L Sbjct: 7 EVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKELL 66 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + ++G EEL GN + R+ KY F + NGE K W+G GR PKPI A Sbjct: 67 AFIASEGFTLEELNGNGITKRKKPPVHRK---PKYTF-EENGEMKVWSGVGRKPKPIEVA 122 Query: 123 LAEGKSLDDFLI 134 L EGK+L DFLI Sbjct: 123 LNEGKTLSDFLI 134 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 102 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 62/133 (46%), Positives = 91/133 (68%), Gaps = 2/133 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + + L+NIR+ RA ARE + ++L+EM EK V +ERR + E++ E A R+EK Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 L+L++ +G EELLG+ + + KK PAKY+F + NGETKTWTG+GR PKPIA+ Sbjct: 68 LQLIEGEGFTAEELLGDDVNISKKRSKK-PKAPAKYEFVE-NGETKTWTGKGRKPKPIAE 125 Query: 122 ALAEGKSLDDFLI 134 AL+ G++L++FLI Sbjct: 126 ALSAGRTLEEFLI 138 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 101 bits (251), Expect = 8e-21, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L + R L+ +E S++ L++ EK V ++R E + ++ AE+ +I Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 WLELMKADGINPEELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M A G++ + N ++ + ++ ++ RP KY + V+G WTG GR P Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYSIS-VDGVRTDWTGIGRMPVVF 119 Query: 120 AQALAEGKSLDDFLI 134 ++AL+ GK L+DF + Sbjct: 120 SEALSSGKQLEDFSV 134 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 ++ L + R +A +E + L E+ EK + ++R+ +E + + + +I Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L++ G++ ++L ++ ++RQP+P KY T V+GE TWTGQGR PKPI Sbjct: 66 LKSLIEEAGLSLDDL------SSTPIKRERQPKPPKYAIT-VDGEQVTWTGQGRMPKPIK 118 Query: 121 QALAEGKSLDDFLI 134 A+ G SL+ FLI Sbjct: 119 AAIDNGASLESFLI 132 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM +K VV +ERREE E++ E E + K Sbjct: 11 GIISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQA 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQP--RPAKYKFTDVNGETKTWTGQGRTPKPI 119 +E + + G++PE LL +A + +K + R AKY+F D NGE + W+G G+ P + Sbjct: 71 IEYIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLAL 130 Query: 120 AQALAEGKSLDDFLI 134 + L EG ++DFLI Sbjct: 131 QKLLDEGHFMEDFLI 145 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 98.7 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +L+SL++ R + M + S+D + ++ + + E+ E + ++++ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEKELEAKMAAEIEERERQELEA 207 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + I+ +L + K T G+ + W G G P + Sbjct: 208 LRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAALQ 267 Query: 121 QALAEGKSLDDF 132 L EG L DF Sbjct: 268 SLLDEGFELSDF 279 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 98.3 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 L+ +NN+R+LRA A+E ID L E EK V +ER +EEE+ ++E +++E + + Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 ELMKADGINPEEL--LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + GINPEE+ ++ + R+ R KY++ D NGE + WTGQGR P+PI+ Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 QAL-AEGKSLDDFLI 134 +A+ EGK L+DFLI Sbjct: 124 EAIKNEGKKLEDFLI 138 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + +SL + LR A+ + + LE + + + +E+REE E ++ ELAE +EK + Sbjct: 12 ITSESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAI 71 Query: 63 ELMKADGINPEELLGN--SSAAAPRAGKKRQPRPAKYKFTDVN-GETKTWTGQGRTPKPI 119 + ++ G++PE + + + +K + PAKY+FT G+T TWTG GR K + Sbjct: 72 KYLEELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGL 131 Query: 120 AQALAEGKSLDDFLI 134 + G SLD+FLI Sbjct: 132 QLLIDAGHSLDEFLI 146 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 +++ L+ I +LR A+ ++ LE++ + +V +E +E E ++++K Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 LELMKADGINPEELLGNSS----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 L++++ G+N + + +K + R KY+F + NGE K W+G G+ P Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPL 129 Query: 118 PIAQALAEGKSLDDFLI 134 + + L EG SL++FLI Sbjct: 130 GLQKLLNEGHSLNEFLI 146 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L++ R ++ + +L ++ K + E ++E++Q + R EK S L Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L+ ++G +PEEL+ ++ K R R KY++ D G K W+G GR P+ I + Sbjct: 68 ALIVSEGFSPEELITVAAI------KTRSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 LAEGKSLDDFLI 134 L G +LDDFLI Sbjct: 121 LNSGATLDDFLI 132 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + L + R L+ RE LE + + E+R E +Q++ +R+EK + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L L++++G +P EL+ + A K + Y++ + NG K W+G GR P I Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 QALAEGKSLDDFLI 134 Q L GK L+ FLI Sbjct: 114 QELDAGKPLESFLI 127 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 89.0 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 M+ L N+R+LRA ARE S+ L+E L+KF V +ERREEEE E++ K+ + + Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 +++A+GI EEL+ A K+ KY F+D NGE KTWTGQGRTPK + Q L Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARPA-KYTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 AEGKSLDDFLI 134 G L +F I Sbjct: 120 DNGAQLSEFEI 130 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 16/122 (13%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 T+ + S++ L+ + E R + ++ + K G + Sbjct: 14 TMAKALEKMSLEELQAHQRDVEATI---------KGYEKKRRADCLAELKAVAKKHGFSL 64 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +E G K AKY + +++TWTG+GR P + +AL+ GKSLD+F Sbjct: 65 DEFTG-----GKSGSKSGPKGVAKY--ANPADKSQTWTGRGRQPNWVKEALSSGKSLDEF 117 Query: 133 LI 134 I Sbjct: 118 AI 119 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 85.2 bits (209), Expect = 6e-16, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERRE--EEEQQQRELAERQEKISTWLELMKADGINPEE 74 MA+ + LE++++ R + R EE + E E+Q EL+++ G N + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLGNSSAAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 L G+ + GK+ R+P KY+ + ++TW+G+GR PK + L Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPE--NPSETWSGRGRKPKWVEAHLE 118 Query: 125 EGKSLDDFLI 134 G +++D LI Sbjct: 119 AGGNMEDLLI 128 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 83.6 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 +S + SL N +R + E S + ++ + ++R E ++ ++ Sbjct: 13 LSTVRTSLLNSNLVRKLIMEMSDEDFNQVKDNLEKAIEQR-----------NELKDSLAI 61 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M G+ E++ K KY++ + NG+ W+GQGR P IA Sbjct: 62 IKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIA 120 Query: 121 QALAEGKSLDDFLI 134 +A+ G SLDDFLI Sbjct: 121 EAIKAGGSLDDFLI 134 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 83.2 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS++L+ N RA A+E S+ LE ++ F ++ +EEE + E A + + Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L+ G+ EE+ K + KY+ T V GET WTG+GRTPK Sbjct: 61 IANLIAKSGLTMEEVA--LLTTPKAGATKGKTVEPKYRLT-VAGETHEWTGRGRTPKVFQ 117 Query: 121 QALAEGKSLDDFLI 134 + G S + I Sbjct: 118 EYFDAGNSRESVEI 131 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 82.1 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + L + EK V E+ E+ E +++++ A ++ E Sbjct: 3 KKDLFSMQFNELWRLHEKITKVLAEKIVAEK------RELEKRLAQLNRSDVASKVDASE 56 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L A +P +K KY+ + ++TW+G+G+TP A AL G+ +DDF I Sbjct: 57 LSPALVAGSPP-RRKYPRVLPKYR--NPLSPSQTWSGRGKTPHWFANALKMGRKIDDFRI 113 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 79.0 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQP 92 ++ + E++ ++ E + +L+ G+ + + +AA AGK R P Sbjct: 6 ELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAGKTRTP 65 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + +TW+G+G+ P + +A G+ +DFL+ Sbjct: 66 VAVKYRGPN----GETWSGRGKAPNWLTSLVAHGRDKNDFLV 103 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 78.2 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S L + E E ++RE E+ + +EL +A G++ EE+LG Sbjct: 3 LSNLSFADLLSLKSDL---------ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLG 53 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G R+P AKY TWTG+GR P + + LA GK+L+D I Sbjct: 54 -------KVGPARKPVEAKYC--HPQNPELTWTGRGRKPLWVQELLAAGKNLEDLAI 101 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 76.7 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ID L E+ + ER E+ +EL ER ++ D L Sbjct: 8 LESMPIDDLWSFHERISKILAERITSEK---QELEERLAVLNRGRNAFGGD-------LA 57 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +S + + +K KY+ + ++TW+G+G+ P+ + A+ G+ +DDF I Sbjct: 58 HSLDSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIKSGRKIDDFRI 112 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 RE S+ L+++ ++ + R + RQE + + G+ +E++G Sbjct: 7 LRELSLSKLKQLQKEAALAVATRETQL---------RQEARAKLESVAAEYGLGLDEIMG 57 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + P Y+ + +TW+G+GR P + + L G L ++LI Sbjct: 58 APTLNKGG----KMSYPPLYR--NPGDPEQTWSGRGRRPLWLLKLLETGHDLSEYLI 108 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + + R A++ S+ L+ + ++ E +++ RE R + Sbjct: 2 LSAIAKSKTAARNAAKDLSLVELKSAIANLTAAA--KQIEVKEKTREDKRRAADLKKLQS 59 Query: 64 LMKADGINPEELLGNSSAAAP--------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 +MK G+ E + + KR P P KY+ T V GET WTG+GRT Sbjct: 60 MMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYEIT-VAGETHQWTGRGRT 118 Query: 116 PKPIAQALAEGKSLDDFLI 134 P + + G LD LI Sbjct: 119 PIVFREFMENGGDLDSCLI 137 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G + Sbjct: 171 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFG-ARRGRRGQ 229 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 230 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 269 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L R +A+ + +I+ L+ +L + E+ E ++Q + ++ + Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRP---AKYKFTDVNGETKTWTGQGRTPK 117 E + G++ ++L+ +K Y++ G+ KTW G+G P+ Sbjct: 61 MREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNVPE 116 Query: 118 PIAQALAEGKSLDDFL 133 + + L EG L DFL Sbjct: 117 EMQKMLDEGLELADFL 132 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 75.2 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAA 82 L++ +++ + KE R++ +++++ ER + +++ EL+K G+ +L G S+A Sbjct: 6 TLQQQIQEAEAIVKELRKQLDEERKG--ERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AG KR AKY+ + KTWTG+G++P +A LA G + DDFLI Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQLAAGYTKDDFLI 112 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 75.2 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L ++ E +Q++ R + + SS Sbjct: 1 MSLEDLFNQVDNLNNDDFEALINHVDKQKKRRARDILAEAQRQASR----------FISS 50 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + +R P +Y+ + + ++TW+G GR P+ + L G S D LI Sbjct: 51 AEGGKPATQRTAMPPRYR--NPHNHSQTWSGMGRQPQWFKENLEHGMSEHDMLI 102 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 74.8 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 11 IRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI 70 + T+R A E L++ R E+EQ++RE R++ ++ + G+ Sbjct: 8 LETIRQAAEELDFVDLQK---------ASRMIEKEQKRREKEARKQAQQEMKQVAQKYGL 58 Query: 71 NPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE-GKSL 129 + +E++ S A K P K++ + +TWTG+GR PK + E G+ + Sbjct: 59 DLDEIVSGVSKGAGAKATKGNKVPPKFRHPE--DPDRTWTGRGRKPKWVVHWEEELGRDI 116 Query: 130 DDFLI 134 ++ I Sbjct: 117 EELRI 121 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 74.8 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ ++ + K ++++ + A + + KA G + EEL G ++ Sbjct: 1 MSIDLTGLSAKQLGALIKNAKKQQTVVAKR-APIAKVRTQLTRAAKAQGYSIEELFGAAA 59 Query: 81 -----------AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 PRAG+K KY+ + +TWTG+G+ P+ +A+ A GK + Sbjct: 60 SAGPGRPAAAGKPGPRAGRKLGKVAPKYR--NPANAQETWTGRGKQPRWLAELTAAGKKV 117 Query: 130 DDFLI 134 +DFLI Sbjct: 118 EDFLI 122 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 74.8 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 13/121 (10%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ E S++ L+ + E+ + ++++ ++ + +E+ + G + E Sbjct: 1 MKPDISELSVEELKRLQEEAEALIASKKDQA---------IEDAYNQIIEIAENVGFSVE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +LL + + +K + ++ + N +TWTG+G+ P+ + + +G L+DFL Sbjct: 52 QLLEFGAQKRKKTTRKS----VEPRYRNKNNAEETWTGRGKQPRWLVAEIEKGAKLEDFL 107 Query: 134 I 134 I Sbjct: 108 I 108 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY--- 97 R ++E +R+ A + + +L + G++ +E++ + A PR + + PAK Sbjct: 17 RIDKEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMASPVFATPRKARSKTAAPAKAPLP 76 Query: 98 -KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KF N W+G+GR P + LA G SLD + Sbjct: 77 VKFRHPNNRELAWSGRGRKPHWVEAWLANGGSLDALAV 114 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +++ + ++E ++ E Q I + + I +EL + A + Sbjct: 20 IQLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTYYNITLQELGYTNVPDDGLARRNSSK 79 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R Y+ N E +TW+G GR P+ + +AL G +DFL+ Sbjct: 80 R-VYYR----NEEGQTWSGVGRQPRWLKEALLNGMKKEDFLV 116 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 11/116 (9%) Query: 20 EFSIDVLEEM-LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 ID L L+K ++R E E++ L + + G+ E+++ Sbjct: 2 SIDIDSLNAADLKKLASKIEKRIVEVEKESLHL-----ALKEMRAVADKLGVAFEDVIAL 56 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K K+ + + ++TWTG+GR P + AL GKS+DD I Sbjct: 57 HKGKGRKPSTKATA-----KYANPDDPSQTWTGRGRKPAWVNAALEAGKSIDDLAI 107 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 74.0 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 13/122 (10%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 ++ + LE + +R+ E+ +R+ ++ + G + Sbjct: 11 SMNKDLSSMTRSELETL---------KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSL 61 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 E+ G + K PAKY+ + ++TWTG+GR P AL+ G S + Sbjct: 62 AEITGMAPRKGKTGPK--SSAPAKYR--NPTDISQTWTGKGRQPAWFKDALSNGTSPEAM 117 Query: 133 LI 134 I Sbjct: 118 EI 119 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ + ++K+ + R++ + ER I + G+ +L ++ Sbjct: 4 TLADINSQIKKYDEQIAQLRKQ--AEDLRNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWT-GQGRTPKPIAQALAEGKSLDDFLI 134 + + A K+ GE TW+ G+GR P+ + +ALA GKSL +F I Sbjct: 62 GSVKRSAGVPAVKAAAKYRGPTGE--TWSGGRGRKPRWVTEALAAGKSLSEFEI 113 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S+ L+++ + + + + R AE K G + EL + Sbjct: 9 LSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELAEMT- 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KR KY+ + TW+G+GR P IA AL GKSL+DF I Sbjct: 59 -----PAQKRAAVAPKYRHPE--NPEITWSGRGRKPAWIAGALEAGKSLEDFAI 105 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + E E + R+ + Q+ L + + G++ EELL + + + + + Sbjct: 18 QHDIEREIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSK----TGKGQKVQAR 73 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + ++TWTG+GR PK IA+ LA+GK+LDDF I Sbjct: 74 YQNPSDNSQTWTGRGRQPKWIAEGLAKGKALDDFRI 109 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S + LE + + E + + + + G EL G Sbjct: 36 LETLSREELEALQAEVAAAIATL---------ERQRKAQAQAELARRARELGFTLRELTG 86 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S A P + ++ + +TW G+GR P+ +A+A G++ +D LI Sbjct: 87 TSELA-----------PWELRYANPANVNQTWCGRGRKPRWFEKAMAAGRTPEDMLI 132 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 + ELM+ +GI PEEL K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + + ++ E I+ + + G+ ++L +A R K Sbjct: 1 MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K P PAKY+ TW+G+G+ PK I GK+ + FLI Sbjct: 61 K-APLPAKYQDPKSGN---TWSGRGKPPKWIV-----GKNRERFLI 97 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S D ++ + + + +++ +ER+E + EL G+ + + S Sbjct: 1 MSHDFSGYTAQELQSLID--AATKALKEKLESERREYLRQMNELASKAGVRFQIIEDLSK 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ PAKY+ + + + W+G+G P+ + LA+G+ + +F I Sbjct: 59 GGGAPSTRRGAKVPAKYQ--NPHNPAEKWSGRGVKPRWLQAFLAQGRDIKEFEI 110 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M +K + + E+ + AE I+ LM GI +L + S P Sbjct: 8 MSQKAALERQAAALTEQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSPVKPAKAA 67 Query: 89 K-----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + KY+ T TW+G+G P + ALA G+ +++F + Sbjct: 68 KTGGTAGRKVAVKYRNTATGD---TWSGRGLQPNWLKAALASGRKIEEFSV 115 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 14/117 (11%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ L ++ ++ E ++RE E+ ++ K G EELLG Sbjct: 3 LSTLTVSQLRDLQQQIPA---------EIKRREAQEKVNVLNELRAFAKTRGYAIEELLG 53 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G K K K+ WTG+GR PK + +A G +L+ L+ Sbjct: 54 KEAKVKAATGNK-----VKVKYRHPQNPELEWTGRGRKPKWVEAWVANGATLESLLV 105 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ + + + K+ E+ + EL ER E + + G + +E+L + Sbjct: 1 MSIDLNKMSRKDLLQLRKD--VEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPA 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R K KY+ + +TWTG+GR P + AL+ G + D I Sbjct: 59 KGAARKSKAS----PKYR--NPENPDETWTGRGRKPHWVHTALSNGVDISDLEI 106 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 72.1 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ + E+ + ++ KA G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAKL---------ANREKALAVVAVEKIAKAHGFTLA 51 Query: 74 ELLGNSSA-AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 EL + + +K+Q + + KF +++ KTWTG+GR P QALA GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQALAAGKTPDEM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 72.1 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L E+ E+ V + + E+++ R L L G N + + Sbjct: 26 MTVDELWEIHERISQVLCSKIQSEQRKLDGHLSR-------LRLGVTSGANQQ---SDDE 75 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A + KY+ + TW G+G+ P + L GKS+DDFLI Sbjct: 76 SGPKPARRPYPKVYPKYRSLK--DPSLTWAGRGKQPLWLIDELKSGKSIDDFLI 127 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 72.1 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI L+ + + E R+E +S E + G + EL G + Sbjct: 9 LSIKELKNLQTQVAKAISTF---------EERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 RQ A K+ + + +TW+G+GR P +ALA GK+ +D I Sbjct: 60 T--------RQRAGAAPKYANPDQPEQTWSGRGRKPHWFVEALAAGKTAEDLQI 105 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 71.7 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G + Sbjct: 73 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFG-ARRGRRGQ 131 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 132 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 171 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 71.7 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+D LE+++++ ++R+ E + + + E+ K G+ P++LL +S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEKMAK---------NLGVAPQDLLKSS 57 Query: 80 SAAAPRAGKKRQP------RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + K RPAK KF D N TWTG+G+ P + AL++G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALSKGAKLEDFA 117 Query: 134 I 134 + Sbjct: 118 V 118 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 71.3 bits (173), Expect = 8e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L+N R ++ + +E ++ K +ER++EE+ Q+ L Q I L Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKT------WTGQGRTP 116 +L + P KK+ D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 KPIAQALAEGKSLDDFLI 134 K I + L G L +F + Sbjct: 130 KWIKERLEMGFELKEFEV 147 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 71.3 bits (173), Expect = 8e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ L+ E + + + + ++AE+ + I+ M A I +EL G + Sbjct: 3 DLETLKAQREILQAQLAD--IDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 A K + P +Y+ + TW+G+GR PK I + Sbjct: 61 PRHAAAKGKGTVPVRYRNPETGD---TWSGRGRRPKWITASAD 100 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 E+R +E+++R+ + +E + GI EE L + + + + P KY+ Sbjct: 23 EKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEALSDLNGRTGPSRR---RVPPKYR 79 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GRTP+ I + +G S ++ I Sbjct: 80 HPH--DPDTTWSGRGRTPRWIQEWEQQGGSREELRI 113 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 +AE + I+T E + GI PE+L G A R P KY+ TW Sbjct: 52 RIAELESIIATIREQIAEYGITPEQLFG---RRRAPASGTRAPVAPKYRDPKTGA---TW 105 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 +G+G+ P IA A K+ D FLI Sbjct: 106 SGRGKAPHWIANA----KNRDRFLI 126 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 ++ Q+ +R+ I + M+ G+ E+L AP PA + + N Sbjct: 1 MKEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDAPPK-------PAAPVYMNAN 53 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G + W G G P + +A+ G+S++ F + Sbjct: 54 G--QVWDGTGPMPDWLQRAVNAGQSIEHFRV 82 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ S++ L+E+ + +E +QE + + G N EEL Sbjct: 6 LKDLSLEELKELRVEIAQAIT---------AQERHCKQEALEQLQAKARQLGFNLEELA- 55 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R A ++ + + W G+GR P+ QA+A GKS ++ I Sbjct: 56 --------PAMQRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAMAAGKSPEELQI 104 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + L+ + + K E +++ ++ G + +L G+ Sbjct: 8 SMDLSELKSLRKDVDAAIKTF---------EDRKKKAALAELEAKAAEMGFSLNDLTGS- 57 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G+ R+ P KY+ + + TW+G+GR P + +++G + +D LI Sbjct: 58 -----GGGRGRKVNPPKYRHPE--NDALTWSGRGRQPDWYKEQVSKGTAPEDLLI 105 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E +S + + G EL G A +AG+ R Sbjct: 34 DLLAQREKLEKQIEEAKSREYAEVLSDVKQKIADYGFTLAEL-GLGRGKAGKAGRPRAGV 92 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ + TW+G+G+ P+ I GK+ + F I Sbjct: 93 AAKYRDPESGA---TWSGRGKPPRWI-----AGKNREQFAI 125 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 69.8 bits (169), Expect = 2e-11, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 15/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 E + + +E+ + + V E + E + I + + GI+ E++ G + Sbjct: 3 ELNPETFQELRARLKSV------AEAAEIARKREAADAIKVIRKTVLQYGISAEDIFGRA 56 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + R P KY + TW+G+GR P+ I G++ D FLI Sbjct: 57 RPNGGRGKR-RGPAAPKYCNPETGA---TWSGRGRPPQWI-----AGRNRDRFLI 102 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 69.8 bits (169), Expect = 2e-11, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 16/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+ L+EM ++ E+ ++++ ER+E ++ + G EL+ Sbjct: 6 KMSVAELQEMRKEID---------EQIARKKVEEREEVLAEMKAMAAKRGFEFSELV--- 53 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K + P KY+ + ++TW+G+GR P I A+ +G ++DF I Sbjct: 54 --SGKSKAKAKDKLPPKYR--NPKDASQTWSGRGRKPNWIQDAVKKGAKIEDFAI 104 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 69.8 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++ + I L+ A + + ++ + + ++L + + + Sbjct: 1 MSDLIEIQSQIEKLQKQASDIKAREFGKTVQDILA----KMQAFGITLKDLQPGKARGAK 56 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 G G A K P AKY+ + G W+G+G TP+ + Sbjct: 57 GKAKATKVG-----KAGAGVKPAGAPKKVALPVAAKYRGPNGEG----WSGRGLTPRWLT 107 Query: 121 QALAEGKSLDDFLI 134 L +GK+ +DF I Sbjct: 108 ALLVDGKTKEDFAI 121 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQP 92 ++ + +++ ++ AE I+ + + ++ +L G + A KR Sbjct: 6 EILAQIEALKQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAAGKRGT 65 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ W+G+G PK + L GK+ + FLI Sbjct: 66 VKAKYRNPAAGAS---WSGRGVMPKWLKAELEAGKAKEAFLI 104 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 69.0 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E ++ + M GI+ EL G +A +A + R Sbjct: 6 ELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAARPRAGV 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ D TW+G+G+ P+ I G + FLI Sbjct: 66 APKYRDPDSG---STWSGRGKPPRWI-----AGLDREKFLI 98 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 69.0 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 18/115 (15%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 ++D L + E + + Q++ + + + ++ + + EE+L Sbjct: 25 SLNVDELRAITENAQQLIA---------QKQHQRLYDAYTQFEKIAEESNASIEEILQAG 75 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K + + + + +TWTG+GR P + +ALA G+ L+DF I Sbjct: 76 EKLEKKRSIK---------YRNTDNDEETWTGRGRKPTWLVEALAAGRRLEDFAI 121 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 13/120 (10%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 R A E +++ ++ + +++ ++ E + + + + G++ ++ Sbjct: 24 RKEAVESYGEMVMATYKELLAQLDDLKQQ--AKRARALELPDVLVGLRKKIVEYGLSQKD 81 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L R K +Y+ D TWTG+GR P I G+ + F I Sbjct: 82 LF---PPRLGRPKKADALPKPRYRDPDTGA---TWTGRGRAPAWI-----AGQDRERFRI 130 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAE-----RQEKISTWLELMKADGINPEELLG 77 L ++ F E +E+ QR++ E +++ I M I +EL Sbjct: 15 YQYLSIIIMNFMSTITELQEQLVAIQRQIDEQRALGKKQAIGEIKAKMAEFDITVDEL-- 72 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S + R ++++P KY+ +D +TW G+G P + A G + D+L+ Sbjct: 73 -ESKGSSRGFREKKPSVIKYRKSD----AETWVGRGPKPVWVKDVEAAGGKISDYLV 124 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + R ++ ER E +L + G + EL G A GK + AKY Sbjct: 24 DGRVKKALAMARDRERMEIKKRVADLAETHGFSVAELFG--GARGRGPGKTKSVGVAKY- 80 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + TWTG+GR P + + L +G L DF I Sbjct: 81 -ANPENKLDTWTGRGRKPNWVVERLRKGAKLADFEI 115 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 68.2 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + ++ ++ E + + E + I L+ + E++ G+SS K Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ +TW+G+G PK + GK D+ I Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL-----AGKDKADYAI 98 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 67.8 bits (164), Expect = 9e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 37 TKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 ++ + + E++ + + + + I +L + G+ EEL + P+ ++ P P Sbjct: 14 LQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKGKRELGPAPV- 72 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +F + TW+G+G+ P + +A+A+G + D + Sbjct: 73 -RFRHPQDASLTWSGRGKRPNWMKEAMAKGMTEDQMRV 109 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 67.8 bits (164), Expect = 9e-11, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Query: 50 ELAERQEKISTWLELMKADGINPEEL-----LGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 ER + I M G+ EEL + P Y+ N Sbjct: 3 AKTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NA 58 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E TW GQG P + +A+ G+SL+ + + Sbjct: 59 EGLTWDGQGEMPSWLKRAVNAGQSLEFYRV 88 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ ++ +EE++ + AE+ K + G + + Sbjct: 1 MKFNLKGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLD 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAK--YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 EL K AK K+ + + TWTG+GR PK + L +G +L+ Sbjct: 52 ELSDVKPVKRAPKAAKSSDGRAKVAPKYRNPDDANMTWTGRGRKPKWVEAHLEKGGTLEQ 111 Query: 132 FLI 134 I Sbjct: 112 IAI 114 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L+ + K E +++E + E+ + G E+L Sbjct: 6 LSLNELKALRSKVDRAI---------VTYEERKKKEAFAELDEIARKMGYPLAEILTMVE 56 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K+ + ++TWTG+GR PK + ALA GKSL+D I Sbjct: 57 TKPRKT--------VAAKYANPANPSETWTGRGRKPKWVEAALASGKSLEDLTI 102 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 46 QQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGE 105 + E I+ + GI P E+ G S+ R+ R P KY+ Sbjct: 17 AEAMRREEASAVIAKLRAAILEFGITPAEVFGASAKQIRRSP--RSPATQKYRDPLSGA- 73 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G++ DDFLI Sbjct: 74 --TWSGRGRAPRWIV-----GRNRDDFLI 95 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 26/117 (22%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + + D L+EM + E ++R+ E+Q LE+ GI+ +L+ Sbjct: 4 LKNMNFDELQEMRIQID---------MELKKRQAKEKQNARRKILEIANTHGIDIADLVS 54 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + N + + W G+GR PK I + L G +LD+ + Sbjct: 55 KER-----------------HYRNPNNQWELWNGRGRRPKWIKEWLENGYTLDELEV 94 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 15/114 (13%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L ++ E+ V R E+ REL +R ++ ++ + Sbjct: 19 MTVDELWQLHEEIGRVLSVRLTSEK---RELEKRLAQLRGEKGASRS----------GAE 65 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R +K AKY+ + N +TW+G+G+ P+ +A L G+S+D+F+I Sbjct: 66 TDAARERRKYPRVVAKYQ--NPNEPMETWSGRGKVPRWLAAELKSGRSIDEFVI 117 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%) Query: 42 EEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTD 101 + E +QR + +E + + G EL+GN+ A+ + K AK + Sbjct: 18 IDREIRQRRKQQAKEAQRELKAVAEKYGFALNELVGNAQPASGQKAK------AKAIYRH 71 Query: 102 VNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KTW+G+GR P+ I + +G+ +D+ + Sbjct: 72 PEDPSKTWSGRGRRPRWINEWEQKGRDIDELRV 104 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 16/114 (14%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 LE + K + + + + + I+ ++M G+ ++ + Sbjct: 3 TLENLQAKIA------KLQAQAEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKK 56 Query: 85 RAGK-------KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 R K K KY+ TWTG GR P IA A K L D Sbjct: 57 RGRKPGVKTVAKSSASTVKYRDPKTGA---TWTGHGRAPVWIANAKDRTKYLVD 107 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P+PA Y TW+G+GR P IA A K FLI Sbjct: 129 RGPQPALYADPKTGA---TWSGRGRAPAWIASA----KDRTKFLI 166 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 + + + Q + + +E+I E + L + + + + Sbjct: 6 QALSAAELKNLIASAQDQLVKGERERIKAVREKILQLLEGENLELEQVFPNSKPSPRVKN 65 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 P KY + + TW+G+G+ P +ALA GK+ + L Sbjct: 66 PVAPKY--AHPDNPSLTWSGRGKQPNWFKEALAAGKTQEQLL 105 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 9/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ID+ +E + E+ + + E E K G+ E++L + Sbjct: 1 MGIDLSNMSMEDLTAL--EKDIAKAKATLEKKRIAEARKAMEMAAKEYGMTVEDVLSSGP 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K Q AKY + +TWTG+GR P +A+A G I Sbjct: 59 D-----RKSGQKGVAKY--ANPANPDQTWTGRGRQPTWYREAIAAGTDPASMEI 105 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ + E + I+ L+ G+ E++ + R+ Sbjct: 10 ELLKQREQLEQQINEARRRELSDAIAQVRSLVSEYGLKAEDVF---PSGRARSASAGTKV 66 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ +TWTG+G+ PK I G++ + F I Sbjct: 67 APKYRNPATG---QTWTGRGKAPKWIQ-----GENREQFAI 99 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 9/104 (8%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 + + ++E + E Q ++ E ++ + +L A + + P K Sbjct: 12 QIAKLQQEAEAIRQREIQGVVARIREAIEHYQLTASDLGFGGPKRGRGAARSKVPVKGKA 71 Query: 98 -------KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +F D NG + WTG GR PK A+A G + + + Sbjct: 72 KPAVGRVRFRDANGNS--WTGHGRRPKWFVDAIAAGATPESLSV 113 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 13/102 (12%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + AER+ I LMK ++ +L + KR Sbjct: 17 LALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDL----QERVQKRNSKRMS 72 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ KTW+G+GR P + G FLI Sbjct: 73 TVPKYRDPATG---KTWSGRGRQPAWL------GNDPAAFLI 105 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 13/118 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + + + + + KE R+ ++Q E+ I EL+ G++P EL + Sbjct: 2 TTSENIAAEIAELEQKLKELRKAADEQLAR--EKASIIGQINELIAKYGVSPHELAFPKT 59 Query: 81 AAAPRAG----KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +A +K P KY+ TWTG+G+ P I A + D+FLI Sbjct: 60 TKGSKASSSKFQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDA----ANRDEFLI 110 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + S LE++ ++ R+++ ++ R E+ L A G+ E+++G Sbjct: 5 LKNMSRKELEKLASDVGKSLEKHRKKDLKKVRLEMEK---------LAAAHGVTVEDIMG 55 Query: 78 N-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 N ++ A + K+ D ++KTWTG+GR P+ A+A G++ + I Sbjct: 56 NKATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAIAAGQTPESMAI 113 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 +V + + +++ + + AER + E + EL +A + Sbjct: 10 DIVKQIQELQKQADKLKAAERSTALQEVREQISVFEFTAAELGF-----KGKASLAGKKV 64 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P +YK + TWTG+G P + A+ G L+DFL+ Sbjct: 65 PTRYKD----DKGNTWTGRGHRPGWLKAAIESGAKLEDFLV 101 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R + + ++ ER+ + + + G + EL +A + GK P KY+ Sbjct: 10 KRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSELT---AAGGAKKGKSGSVNPPKYR 66 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + +TWTG+GR P I A A+G + I Sbjct: 67 --NPDNPDQTWTGKGRRPDWIKAAEAKGVDISTMQI 100 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 64.8 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R +E+ + A R + I L L+ + PE+L ++ + GK + P KY+ Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLFSST-----KKGKAKSKAPPKYR 68 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KTWTG+G P + K+ DD+LI Sbjct: 69 DPETG---KTWTGRGPIPSWLKD-----KNRDDYLI 96 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 7 SLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMK 66 + R A+ R+ + LE+++ + + + E+ +++Q+ E+ + M+ Sbjct: 19 IMCERRKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---ME 75 Query: 67 ADGINPEELLGNSSAA-APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 I +E L P K KY+ +V+G++ TWTG+GR P A+ Sbjct: 76 EHNITADEALQIFENLFGPSTKSKSTFGKVKYRI-EVDGKSITWTGKGRRPAAFAEMSD 133 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 I+ L VV E+R++ +R + G EEL G Sbjct: 2 TIDIESLSLRELGALVVAAEQRKQLISSRRPAS---AVRRMLKAAAAEAGYTLEELFGGE 58 Query: 80 S-----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A ++ AKY+ + + TW+G+GR P+ +A + +G + DFLI Sbjct: 59 ANEEAAPRRKPARRRTGKVAAKYRDPEY--KRLTWSGRGRMPRWLASKVQKGHKVTDFLI 116 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 E L R E I+ + G+ +L R R A+Y+ + Sbjct: 11 ESSPAAMLRRRAEAIAWVRMQIARYGLAYADLTAAGCFPPLR----RASSKARYR----S 62 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E +TW G+G P + +A+ G+S + F + Sbjct: 63 AEGQTWDGEGDMPDWLQRAVNAGQSPEHFRV 93 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 64.4 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 53 ERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTG 111 ER + I M G+ EEL A P P Y+ N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPKPIAQALAEGKSLDDFLI 134 QG P + +A+ G+S++ + + Sbjct: 71 QGEMPSWLKRAVNAGQSVEFYRV 93 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 63.6 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA---------- 81 K E +++ ++ + R ++ E M A GI +EL Sbjct: 10 KLNQQIAEL--QKKSEELKKKNRPVVVAELRERMAAYGITAQELTRPVPKARMLKEDFAT 67 Query: 82 --AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + K P PAK++ D E W+G+G PK + + +G S D+FLI Sbjct: 68 PIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLIEQGHSRDEFLI 119 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + R + E++Q AE+ ++ E + GI +L + A K + + Sbjct: 12 EIDAEIARLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAKKASEAK 71 Query: 94 PAKY-----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K + + W+G G PK +ALA GK+ D Sbjct: 72 APKAGRVAGRIKYKDDAGHAWSGYGPKPKWFTEALASGKTEADLR 116 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 63.2 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 + K R + + + E Q I +++ + PE+L + + R +R P Sbjct: 5 LDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFADIQRKSRRVR-RRAP 63 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ W+G+GR P+ I G+ + FLI Sbjct: 64 ALAKYRDPASGA---VWSGRGRAPRWI-----AGQDRESFLI 97 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 62.8 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + L ++ + E + E ++E + + M A G+ E+ + S Sbjct: 1 MDSEELAQLR------LQYHDLGERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFS 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 G PAKY+ N TWTG+G+ P Q +G ++ Sbjct: 55 KVRKPTGVSGMKVPAKYRDRATNA---TWTGRGKAPTWFNQERVQGGHIEQLR 104 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 18/113 (15%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 +++ ++ + E+ + + +++ +R+E + ++ G EL + S+ Sbjct: 3 NLEEVQGIDEQIAAL------QARKKELLENKRKEVLKEIKRAIQIYGFTVNELGLSGSS 56 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ + N +TW G G PK + + +A G L+D LI Sbjct: 57 KKRQP-----------RYANPNDPDQTWGG-GARPKWLKEYMARGGKLEDCLI 97 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E+M ++ + E E + + ER + L+ + E+ G S+ Sbjct: 13 EKMSTFHELLAQRAALEAEIEAAKAEERLIALEEVKRLVDEFAFSTREVFGTSAV----- 67 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KRQP +Y+ TW+G+GR+P I +GK F I Sbjct: 68 -RKRQPVQPRYRDPATGA---TWSGRGRSPAWI-----DGKDRSQFQI 106 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 S + L +++ ++R ++ R+ AE EL + ++ EL G Sbjct: 8 SLSAEDLRQLMANAERTLRDRHQQRVHSLRKEAE---------ELAASLNMSVAELFGLE 58 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ K PAKY + +TWTG+G+ P +A ALA G+SL+ F + Sbjct: 59 KSSKLANKK----LPAKY--INPANPAQTWTGRGKRPHWLADALARGESLEKFAV 107 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 18/113 (15%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 + + L+ L+ +E + + E +S E + I P+++ + Sbjct: 3 TYEELKAQLDALN---------KEAEAAKAREISTALSQIRETVLRYEIRPDQIFPQWTR 53 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + R P P KY+ +TW G+GR PK + G + FLI Sbjct: 54 LRSPDKR-RGPLPPKYRNPMTG---ETWCGRGRAPKWM-----SGSPREVFLI 97 >UniRef50_B1FNZ3 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FNZ3_9BURK Length = 115 Score = 62.1 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 42 EEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTD 101 +E ++ ERQ + E + G+ E+ G + A + R+ KY+ + Sbjct: 14 LAKEVERARCQERQGVLDDVREKVGRYGLQVVEIYGEAQVRALQCLGNRRKIAPKYRDPE 73 Query: 102 VNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TWTG+G P+ I G++ +FLI Sbjct: 74 SGA---TWTGRGLEPRWIR-----GRNRREFLI 98 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 62.1 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 9/88 (10%) Query: 47 QQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGET 106 ++ LAE I + G+ ++ G A + +Y+ Sbjct: 19 EEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPRPSGS-APRYRDPKTGA-- 75 Query: 107 KTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G + FLI Sbjct: 76 -TWSGRGREPRWIK-----GGRRERFLI 97 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 62.1 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 12/101 (11%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 + + ++ +++ + E + I+ ++ GI ++L +K+ Sbjct: 7 IEIQEEIKKLQKQANEIRAKEIADIIADIKVKIQLYGITEKDLGFGE-------KQKKTI 59 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 P YK + +TW+G+GR P I + L G +L++ L Sbjct: 60 FPPLYKKGN-----RTWSGRGRQPGWIKEHLEAGGNLEELL 95 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + Q LN + + + R + D + ++ + V ++ +E+ ++R+ AERQ KI Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L++ +GI ++L + + P Y NG+ + G GR K + Sbjct: 71 ILLRNEGIGLDDL-----EKHMVSRRSPTVEPKTYLI---NGKKIIYKGSGRMNKVLKAI 122 Query: 123 LAE-GKS-LDDFLI 134 + + G L+ +L+ Sbjct: 123 VDKEGHDALEKYLV 136 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM EK VV +ERRE+ E++ E AER+ K Sbjct: 11 GIISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQEL 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 L+L+ +G +PEELLG S A K R+ K + Sbjct: 71 LQLIAGEGFSPEELLGLSEE----APKSRKKTLPKPR 103 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 26/132 (19%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + S+ L+++ ++E +R L ++ I ++ G++ +E+L Sbjct: 4 LKNLSLPELKKLS---------VAVQKELDRRTLQSKKALIKQVQQMAAEHGLDADEMLA 54 Query: 78 -------------NSSAAAPRAGKKRQPRPAKYK----FTDVNGETKTWTGQGRTPKPIA 120 + + A KK+ P K K + + + W+G+GR P + Sbjct: 55 EVGSSGREGSSVKSGAGKAAPGRKKKAPAVKKEKLPPVYWNPVNAQEGWSGRGRKPSWVI 114 Query: 121 QALAEGKSLDDF 132 L G L+ Sbjct: 115 TFLENGGDLESL 126 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 18/125 (14%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 + + L + + + E + E +S E + + +L ++ AA Sbjct: 1 MAKSLAQVNAQIAKL--QREADALKAKEVAGVVSRIKEAIAIYSLTSADLFDDAVAAVKP 58 Query: 86 AGKKRQPRPAKY----------------KFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 A ++++ A + + TWTG G+ P A+ GK Sbjct: 59 AARQKRTVAAAPVVGKKAPKAAAKKAESQIKYRDEAGHTWTGHGKRPNWFKAAIEAGKKP 118 Query: 130 DDFLI 134 +D + Sbjct: 119 EDLAV 123 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 61.7 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E + + +S +L+ G +++ Sbjct: 30 ELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYIPEK--------TSA 81 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ TWTG+G+ P I + DDFLI Sbjct: 82 PAKYRDPATGA---TWTGRGKPPNWIKD-----QDRDDFLI 114 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 61.3 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + ER ++ EL+ + E+ G + Sbjct: 1 MHQVQTLQAQLAELDRRIKAARSRERNAVLAQVRELVTGYALTAREIFGQGYSD----RA 56 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K KY+ TW+G+GR P I G+ FLI Sbjct: 57 KLFTVGVKYRDPATGA---TWSGRGRAPAWIV-----GRDRTAFLI 94 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 61.3 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 10/107 (9%) Query: 29 MLEKFRVVTKERRE-EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 M + + ER ++ ++ + R E IS L L+ G+ +L + ++ + Sbjct: 1 MSNTLQELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTST-KKNK 59 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ ++ E W+G+G P + GK D+LI Sbjct: 60 YSATKVPAKYRDSETGSE---WSGRGIPPVWLR-----GKDKKDYLI 98 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 5/94 (5%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 ++ +E + + + ++ +E+ K + +++ R +K Y+ Sbjct: 18 KQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVYE---RRNSRKLAKVGLIYR- 73 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + N ++TWTG+GR P + + L EG + DD L Sbjct: 74 -NPNNPSQTWTGKGRRPLWVLELLREGMTFDDML 106 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 57 KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTP 116 K WL GI+ E + R+ RPAKY+ D TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYR--DPRNAENTWSGTGRRP 83 Query: 117 KPIAQALAEGKSLDDFLI 134 + + L G SLDD I Sbjct: 84 TWLKELLDSGLSLDDLKI 101 Score = 48.6 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +KR Y+ D + TWTG G+ P + L G SL+ Sbjct: 6 KSEKRPKGEPVYR--DPDNPFNTWTGIGKRPAWLTAKLDAGISLEAM 50 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + K R ++ + + R+ I++ ++ M+ I PEE++ Sbjct: 1 MPRETYAAQQAKIEKEIS--RLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALG 58 Query: 81 AAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 +A ++ KY +TW+G+G+ P+ + G S D Sbjct: 59 SAKSTRAAAPRRKATSDGSKRAVAPKYLHPQTG---ETWSGRGKAPRWLVAEEGNGASRD 115 Query: 131 DFLI 134 FLI Sbjct: 116 SFLI 119 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE++ + ++ + + + + + T LM+ G+ +++ + + Sbjct: 55 VATLEQIQARL------KKLQAQAEAIVAKQSSAVLETIRGLMEKHGLTTKDIDAHLGSK 108 Query: 83 APRAGKKRQPRPAK------YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + Y+ TWTG GR P IA K FLI Sbjct: 109 KRGPKAGAKAAAKTAKSVAKYRDPKSGA---TWTGHGRAPAWIANV----KDRAKFLI 159 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 S A+ G+++ P+PA Y+ TW+G+G P +A A K L D Sbjct: 185 ASKSVGASGGTGQRKGPQPALYRDPKSGA---TWSGRGPAPAWLAGAKDRTKFLID 237 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE--- 74 + +++ L + E+ + + ++R+ + L +A+G+ E Sbjct: 5 LKSYTLPQLRALREQTARAID---------RLQRSQRETLLRRLSALARAEGLTLAELAE 55 Query: 75 ----LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 + G RQP P KY+ + W+G+GR P +A LA G S+D Sbjct: 56 DAAAMKGAERPRKHPRTTPRQPLPVKYR--HPSNRALAWSGRGRQPHWVAAWLANGGSMD 113 Query: 131 DFL 133 Sbjct: 114 ALA 116 >UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS42 RepID=A1W6B6_ACISJ Length = 117 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG----KK 89 + + R ++E+ Q E+ +S E + GI +L + + R G K Sbjct: 12 EIEAEIARLQKERDQLREGEKAGVVSRMKEAIAYYGITAADLGLSVTKRKARTGVAQAKN 71 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + + A + + +TW+G G P+ +ALA GK+ D Sbjct: 72 SKVQRAASRIKYKDDAGRTWSGYGPKPRWFTEALASGKTEADLR 115 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 11/99 (11%) Query: 36 VTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPA 95 +T+ + +Q ER I T ELM GI +L+G R + PA Sbjct: 13 LTELAELDVRIEQARARERVRAIETIHELMDTYGIKHRDLVG---RNGRRGSYQVSALPA 69 Query: 96 KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + W G+G P I GK FLI Sbjct: 70 KYRDPATG---REWCGRGNVPLWIR-----GKDRTRFLI 100 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 22/128 (17%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S+ L + R E E ++R + R++ + ++ +G++ +L+G Sbjct: 3 LGTLSLTELRRLQS---------RVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLIG 53 Query: 78 NSSAAAPRAG-----------KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 ++ A KK++ KY+ + G W+G+GR P+ +A+G Sbjct: 54 SAPVPATEKKPAAKRGRAAAGKKKEAPTVKYRHPETPGVG--WSGRGRKPQWALDWIAQG 111 Query: 127 KSLDDFLI 134 KS+++ + Sbjct: 112 KSIEELAV 119 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 17/106 (16%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEE--------------LLGNSSAAAPR 85 ++ + + + ++ ELM G+ E+ LLG +A A Sbjct: 12 KKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSERLLGTKTARAKP 71 Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 A + P KY+ TW+G R P I K L D Sbjct: 72 ATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDVKDRSKFLID 114 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKADGINPEELLGNSSAAAP 84 + +ML + + RE + E++ + E + GI+ EELL + P Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + AKY K W+G G PK + GK+LDD+ I Sbjct: 61 RKRRTS----AKYYDPSTG---KEWSGFGPRPKWLV-----GKNLDDYRI 98 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 59.4 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 ++ E++ + + I+ +++ G+ E++ ++ + +AG KR K+ Sbjct: 11 QKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPSAKSKPDKAG-KRSVGEPKF 69 Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + TWTG+G+ PK I EGK I Sbjct: 70 RNPETGA---TWTGRGKPPKWI-----EGKDRASLAI 98 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 59.0 bits (141), Expect = 4e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 14/95 (14%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + E A ++ ++ + G + +++ P G R+ AKY Sbjct: 11 KIELEARLADERRAAKEAVLTEIRACVDEFGFSLDDVF------PPDGGHGRRKVRAKYY 64 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 TW+G GR P I GK + F Sbjct: 65 DPASGA---TWSGVGREPVWIR-----GKDREQFE 91 >UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodobacteraceae RepID=A9EH02_9RHOB Length = 118 Score = 59.0 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + S LE++L + + ++++ ++ A + G + + Sbjct: 4 KNELKALSRKELEKLLADVKKALSSVQARDQREAKKAATKAA---------AEFGFSLND 54 Query: 75 LLGNSS--AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + ++ + K + +K F + +TWTG+GR P + +A G + Sbjct: 55 ITETAALVPKKRKTKAKAAKKQSKPVFFNPEDTNQTWTGKGRQPNWYREQIATGMDPEAM 114 Query: 133 LI 134 I Sbjct: 115 RI 116 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 58.2 bits (139), Expect = 7e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNS-SAAAPRAGKKRQPRPAKYKFTDVNGETKT 108 E + + G ++ G + + + P AKY +T Sbjct: 26 RAEEAAGVLEDIRAKVATYGFTERDVFGRKRATQNGKKPQAGVPGEAKYLNPKTG---QT 82 Query: 109 WTGQGRTPKPIAQALAEGKSLDDFLI 134 W+G+GR P I A K+ D FLI Sbjct: 83 WSGRGRAPAWIVSA----KNRDRFLI 104 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 58.2 bits (139), Expect = 7e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +++ +++ A +++ ++ L M GI E+ +A K Sbjct: 1 MQTIAELQAQMASIQKQINEQKAAGKRDALADILSKMNEFGITIHEIQRRIVPVKAKAAK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ E KTW+G+G+ PK + G LDD+L+ Sbjct: 61 T-----VKYRL-----EDKTWSGKGKKPKWVKNIEERGGRLDDYLV 96 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 58.2 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 R + +F + TW+G+GR P + + L EG SL D Sbjct: 225 EQQEEERAGREAATARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDEGGSLADL 280 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 57.8 bits (138), Expect = 9e-08, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 13/105 (12%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAA----PRAGKK 89 ++ +++ E + ++ +E I +LM + PE++ A ++ Sbjct: 6 ELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAASAQRE 65 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + P P KY KTW+G+GR P + GK + FLI Sbjct: 66 KAPLPPKYMDPKTA---KTWSGRGRAPAWL------GKRPERFLI 101 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAAAPRAGKKRQ 91 ++ + R +++ + + I+ + I PEEL S+ A K ++ Sbjct: 6 QLSAQLERLQQKIDKEREKAIADAIAHIRAKIDEYDITPEELGFRPAGSSTAAATAKPKR 65 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY +TW+G+GR P + GK+ FLI Sbjct: 66 TLPPKYLNPKTG---ETWSGRGRAPAWL------GKNRGRFLI 99 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 55 QEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGR 114 +E+ E++ + + + K RP K F + + +TW+G GR Sbjct: 25 KERKKRAREIIAEAQRQASRFAQDIAPTV--SRKTASKRPPK--FANPDNPEQTWSGMGR 80 Query: 115 TPKPIAQALAEGKSLDDFLI 134 P + +G + + LI Sbjct: 81 QPDWYKAYIDKGGNEKNMLI 100 >UniRef50_B1FTJ8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTJ8_9BURK Length = 115 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 +E ++ ++ ++ + + E ++ ++ M I+ EL G + G Sbjct: 6 IEIAQLRAQQEALNKQLAEAKERETLLVLNEIVQKMGEYRISVSELTG------RKVGVH 59 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 AKY+ TW+G+GR P I GK ++FL Sbjct: 60 ANELAAKYRDPVSGS---TWSGRGRAPAWI-----AGKDRNEFL 95 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 21/118 (17%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + +I L++ L ++ +E R+ E++ K+ E +K I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIVEEARQ---------KEKKIKLEEIAEQVKLFDITEIELL 53 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + RQ AKY D ++W+G+G PK + GK+LDD+LI Sbjct: 54 RAAGF----VKANRQKASAKYYDPDTG---RSWSGKGARPKWLT-----GKNLDDYLI 99 >UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia ambifaria RepID=B1Z177_BURA4 Length = 105 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 14/97 (14%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 K+ EE+ + LA + + ++ G +++ S A + + KY Sbjct: 10 KKALLEEQLVRERLAIATMVLLEIRQCIEEFGFGVKDVFPAQSGAPGKRRR------VKY 63 Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++W+G GR P + G+ D FLI Sbjct: 64 FNPETG---QSWSGVGREPVWLR-----GQDRDRFLI 92 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 E + + I LM GI+P EL G A A R K ++ Sbjct: 12 LEIHAEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAPAHRK--------PKARY 63 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +TW+G+GR PK + G+ L LI Sbjct: 64 WNPE-TGQTWSGRGRMPKWLV-----GRELASHLI 92 >UniRef50_B2T963 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T963_BURPP Length = 89 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 19/95 (20%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 R E + +Q E ++ ++ + ++ G+ PE+L G + + +Y+ Sbjct: 13 RALEAQAEQLRRHELRQVVAEMRQKIRDYGLTPEQLFGPNLSDL-----------VRYRH 61 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +TW G GR P I GK F + Sbjct: 62 PETG---ETWNGMGRPPNWIK-----GKDRGPFRV 88 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + + + + E ++ + A+R LEL+ G++ +++ R Sbjct: 2 KTYSELLAQWDDLKNEIDRAREREAQRLA--QRVLELLAESGVDVRDMMNPRPRGQGRG- 58 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KY TW+G+GR PK + G++ FLI Sbjct: 59 ---RRITPKYWNPQTGA---TWSGRGRMPKWLI-----GQNPRQFLI 94 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 55.5 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 21/121 (17%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S L+ +E+ + + ++E ++ E ++ G+ +L + Sbjct: 3 TSYRDLKAQIEELTA---------KAEAARVSEVAAVVADIKEKIEEYGLTASDLGFKTD 53 Query: 81 AAAPRA-------GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ +++ KYK + + W+G+GR P L K+LDD+ Sbjct: 54 KGTRKSVGQAIAEANEKKSVEPKYKGPN----GELWSGRGRAPVWTQN-LPTDKTLDDYK 108 Query: 134 I 134 + Sbjct: 109 V 109 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 55.5 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 10/85 (11%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 + +R ++ M GI ++L + R R Y+ + +TW Sbjct: 2 DERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQKTAR------YR----SATGETW 51 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 +G G P+ + QA++ G+S+D F + Sbjct: 52 SGDGEMPQWLKQAISAGQSMDHFAV 76 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 55.5 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 14/100 (14%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ R E+E + L + E+M GI+ E A + R+ Sbjct: 14 ELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVE------VRAGGSKRETRRHA 67 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y + +TW+G+G PK I GK FL Sbjct: 68 VPRYWNPETG---QTWSGRGAEPKWIV-----GKDRSRFL 99 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 55.1 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 21/106 (19%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 ++++ K + +++++ ++ + + E + G P+E+ + Sbjct: 33 NSYQEYKQHVKTLQATLDRERKAISAK--VLQEIRECIAEFGFTPQEVFSS--------- 81 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ R KY TWTG GR P+ I GK F Sbjct: 82 --KKKREPKYYDPVSGS---TWTGLGREPEWIR-----GKDRKAFE 117 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L +L ++R LRA R S++ LE L + V +E R ER+ +++ Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEHRT---------REREAALAS 51 Query: 61 WLELMKADGINPEELLGNSSAAAPRAG 87 +E ++ G++ +E+L A R+ Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRSA 78 >UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=D0IZE2_COMTE Length = 112 Score = 54.4 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 15/101 (14%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ ++ ++ E +E ++T +L+ G +++ + Sbjct: 6 ELIAQKNALDKRIEEARSTEAKEALATVKQLIATFGFTSQQVFPWKPEEKKK-------V 58 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A+Y + TWTG+G+ PK I EGK + I Sbjct: 59 EARYYDPESGA---TWTGRGKPPKWI-----EGKDRGQYEI 91 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 54.4 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 23/115 (20%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + + L + K + R E E++ E+M GI+ E Sbjct: 33 KMIAFRDLLALQTKLEKEVENSRLEAEKR---------ICERVREIMAEYGIDAE----- 78 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 A + R+ +Y + +TW+G+G PK I GK FL Sbjct: 79 -VRAGGGRRETRRRAVPRYWNPETG---QTWSGRGGEPKWIV-----GKDRSQFL 124 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 54.0 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 13/100 (13%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + R +S +++ + +E+ G ++R Sbjct: 5 LDLLAEREALMIKLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLRRRGK 59 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 KY+ TW G+GR P I GK F Sbjct: 60 LKPKYRDPKTGA---TWNGRGRPPSWI-----AGKDRAAF 91 >UniRef50_B1KCF0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF0_BURCC Length = 111 Score = 54.0 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQE--KISTWLELMKADGINPEELLGNSSAAAPRAG 87 +K ++ +E E+++ ER I ++ ++ + + A + Sbjct: 8 YQKLLEQYEQLTQEIERERAVETERLVNLVIERVRQVFAEFHLDID-----VAPRAVQEP 62 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KR+ KY + +TW G+GRTP + GK + + + Sbjct: 63 QKRKKLTPKYWNPETG---QTWCGRGRTPLWM-----AGKDRERYRV 101 >UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriavidus RepID=Q46U69_RALEJ Length = 108 Score = 54.0 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 27/109 (24%) Query: 49 RELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA-------------------GKK 89 + + I+ E M + ++L+ + Sbjct: 3 ESDSAKLAAIAWIREQMDNYALTLDDLIAAGCFDGEPSHGDVEAGEMPGAPDVPAVMAAT 62 Query: 90 RQPRPAK----YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P+P K Y+ N ++W G G P + +A+ G+S+D + + Sbjct: 63 AAPQPPKKGPIYR----NALGQSWDGTGEYPDWLQRAVNAGQSIDFYRV 107 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 42/67 (62%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKA 67 + ELM+ Sbjct: 61 YKELMEK 67 >UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=C4KLJ2_BURPS Length = 121 Score = 53.2 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + R +EE + +E ++ +++M I +++ R+ Sbjct: 22 LDLMKRHRALQEEIAAVRRHDTREIVTCIVQMMMMYEICLDDISDALPRQQRLGL--RRR 79 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 R KY + +TW+G GR P+ + G+ +FL Sbjct: 80 RTPKYMDPESG---RTWSGYGRPPRWM-----AGRDPAEFL 112 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +V + ++E + E + +S +++M+ G++ E++ R + Sbjct: 19 LDLVKRHHALQDEIDRVRRREVKRVVSCIVKMMEVYGLDLEQI----KDGVERQSSPHRE 74 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 KY KTW+G+GR P + K +D+L Sbjct: 75 VEPKYMDPQTG---KTWSGRGRMPLWMRD-----KRKEDYL 107 >UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. 383 RepID=Q397M1_BURS3 Length = 114 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++V + +EE ++ ER + I+ LM I +L+G + + R + Sbjct: 11 AQLVVELAELDEEIERARARERVDAIAAVHSLMDTYAIKHRDLVGRNGS---RGSYIVKV 67 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PA+Y+ K W+G+G P I GK F++ Sbjct: 68 LPARYRDPASG---KEWSGRGNAPLWIR-----GKDRRQFVV 101 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 18/114 (15%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 L + + + E + E++ ++ + E + I +E+L Sbjct: 1 MDAPTLPALRAELDAL------NIELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALG 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P+ + +F D + ++W+G+G PK + GK+LDD+ I Sbjct: 55 YLQPKRRRAAA------QFYDPS-SGRSWSGRGPRPKWLV-----GKNLDDYRI 96 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++V + + E + R++ ++ ELM I P EL QP Sbjct: 8 QLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNIRYNVQPT 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIA 120 +Y+ TW+G+G P IA Sbjct: 63 RPRYRDPVSGA---TWSGRGHVPAWIA 86 >UniRef50_B2TE45 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2TE45_BURPP Length = 283 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 22/119 (18%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS---- 80 LE++ K ++ + + + Q + +LM G+ ++ + Sbjct: 3 TLEQIQAKL------KKLQAQADVLLARKAQVAVDQIRDLMLKHGLTTADIEAKAKARRA 56 Query: 81 -----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ TWTG GR P IA K FLI Sbjct: 57 ARGLNGGGKAKAVSSGKAVAKYRDHKTGA---TWTGHGRAPGWIASV----KDRTQFLI 108 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A G+ + +P KY TW+G+G P +A K FLI Sbjct: 120 AAVTHAKGSKGQPKGAQPPKYINPKTGA---TWSGRGPAPAWLASV----KDRSKFLI 170 >UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SG34_PELPB Length = 101 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + +++ Q+ ER+ + M A I EEL R P Sbjct: 6 EIQAQIADLQKQAQEIINIERKAILEDIKAKMAAYNITMEEL---ERKGKAVKSAPRSPS 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KYK ++ + W G+G P+ + + G++++ + + Sbjct: 63 PIKYKKSET----EYWVGRGPKPQWVKGIESNGENIEIYRV 99 >UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n=3 Tax=Cupriavidus RepID=Q46MF0_RALEJ Length = 589 Score = 51.7 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 12/104 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG---KKR 90 + + Q ++ A + + + M+ ++ E++ G S K + Sbjct: 491 SSLLAQLASVNAQLEQLRATVPKVVKEIQQWMQEYDLSIEDIAGKPSVKPAARAVPTKTK 550 Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P +Y+ +TW+G+GR P I GK + FLI Sbjct: 551 AAPPPRYRNPKTG---QTWSGRGRAPAWI------GKRRERFLI 585 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 51.3 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP-----RAGKKRQPRP 94 ++ + + + + + T LM + ++ + ++ ++ Sbjct: 12 KKLQAQAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLGHKKRGRPALKSAGVQKKGV 71 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 A+Y TWTG GR P IA A K L Sbjct: 72 ARYIDPKTGA---TWTGHGRAPAWIAGAKDRSKYL 103 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 59 STWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 + G + + G+ + P+PAKY+ + TW+G+G P Sbjct: 96 AKDRSKYLVAGASVPAATHAAVKGGTGNGQPKGPQPAKYRHPETGA---TWSGRGPAPAW 152 Query: 119 IAQALAEGKSLDDFLI 134 +A K + FLI Sbjct: 153 LAGE----KDRNKFLI 164 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 21/112 (18%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE L + E ++ E+Q ++ + E ++ GI+ +E+L Sbjct: 5 LQELEAQLRDLNIKLSEAKQ---------KEKQAALAAFKEQVELLGISQQEVLSALGYI 55 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R K PAKY ++W+G+G PK + EGK L+ + Sbjct: 56 VQRKRKA----PAKYYDPSTG---RSWSGRGPRPKWL-----EGKDLETLAV 95 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 + +RA + S+ LE+ + + ++++ +Q L+L+K G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 E+L S+ KR AKY+ +V+GE WTG+GR PK Sbjct: 51 LEDLQDTSAD-------KRTKVKAKYRI-EVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkholderia RepID=B2T9F5_BURPP Length = 87 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQ 112 R+ ++ M GI E L A A Y+ N TW G Sbjct: 16 ARERLVAWIRRRMDEYGITIEALAEAIEADAAATR------AVMYRDAYGN----TWDGH 65 Query: 113 GRTPKPIAQALAEGKSLDDFL 133 G P +A+A+ G+++D F Sbjct: 66 GDKPDWLARAIYAGQNIDHFR 86 >UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYC0_EIKCO Length = 97 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 13/108 (12%) Query: 28 EMLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E + ++++ E++ QR LA ER++K++ L +M+ I+ ++ R Sbjct: 2 AARETLDQLLEQKKSLEDRIQRRLASERKKKVNQILAIMRDFEISVADIEAGLKEKQSR- 60 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW G G+ PK I +A +G + FL+ Sbjct: 61 --------PQYRNPKTGA---TWGGVGKRPKWIVEAQEKGIDIKKFLV 97 >UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z6F8_BURA4 Length = 111 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + E + E Q+ I +E+M INP + + + + G R Sbjct: 16 LEMIKRYQSLKHEIDRIRQRETQQIIRCIVEMMVVYEINPHVV--EVALSKRQRGGGRSK 73 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y +TW G+GR P + G+ DFL Sbjct: 74 AIPRYMDPVTG---RTWAGRGRRPLWM-----GGRDPADFL 106 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKAD---------GINPEELLGNS 79 K +++ + ++ EE+++ +E +T + L++ L + Sbjct: 71 AQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRNDIAAYLGTTT 130 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 +A R KY+ G +TW+G+GRTPK A Sbjct: 131 TARKDVVKTGRSEVRPKYELP---GTGETWSGRGRTPKAFAAW 170 >UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A50FD Length = 99 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + + E + + + ++ + ++A GI ++ + + K AKY Sbjct: 11 KAKLEHQLELERCRLFESVVAEIVACVEAFGITERDIFKSERIDTRKRRK------AKYF 64 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 TW+G GR P+ I GK F Sbjct: 65 DPTTG---CTWSGVGREPQWIK-----GKDRSAF 90 >UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXE8_LEPCP Length = 98 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E++ I LM I+P EL G A A Y+ TW Sbjct: 7 EPEKEAAIRKIRRLMAFWSISPTELRGRGVPAPRPAPAAAAVAR--YRHPVSG---STWD 61 Query: 111 GQGRTPKPIAQALA-EGKSLDDFLI 134 G+G P+ + +AL EG ++D + Sbjct: 62 GEGPQPQWLREALLYEGYTVDQLRV 86 >UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2P0K4_XANOM Length = 130 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 35 VVTKERREEEEQQQREL-AERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP- 92 + +E R+ E+++ + A+ E +E++ G + A+ GK + P Sbjct: 16 QLLEELRKLEQEEAQLKYAQTLEAFDQVIEVLTQFGNRFNAKQKSQIASLAMTGKTKGPL 75 Query: 93 -----RPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 AKY +TW+G+GRTPK Sbjct: 76 SSTGDVVAKYWIPHSG---ETWSGRGRTPKAFKAW 107 >UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7B2_9BURK Length = 103 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 17/95 (17%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + EE+ + R E + + ++ + EEL K++ +Y Sbjct: 11 KSELEEQIAKYRALVRDEILIEIMLAIEEFHFDAEELF---------PAGKKRKVKPRYF 61 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 W+G+GR P+ + GK+ DF Sbjct: 62 DPQSGA---VWSGRGREPRWLK-----GKNRRDFE 88 >UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodobacter sphaeroides RepID=A4WW11_RHOS5 Length = 110 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ + A R + + + + + +W G+GR P A+A+G++ ++ Sbjct: 49 QIARTAKEEAARIKGEAGESGKRVSYFNPTNRSVSWNGRGRCPHWFKVAMAQGRTPEELA 108 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREF-SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIS 59 M + ++L N R+L AR + + + ++E+ + +R++EEE++Q++ R EK++ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 TWLELMKADGINPEELLGNSSAAAPRA 86 +++ ++ +G++ +L + S Sbjct: 61 QFIQQLETEGLSITDLQFHISNRNRAR 87 >UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RPM6_XANCB Length = 165 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 16/117 (13%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++ L + + + + +R E++ + L +L+G++ Sbjct: 1 MALTTLNSIDAEIKQLEARKRLIEKRDADVPKALEVLQKYAQVLTAVQRRQVAKLIGDAV 60 Query: 81 AAA------------PRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 AA G+K P KY+ +TW G+GR P A Sbjct: 61 PAAVQVARKGGGLQAGPKGRKLGPVAPKYRIP----SGETWAGRGRMPIAFTAWFAS 113 >UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJ24_9BURK Length = 82 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 12/70 (17%) Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 M+ GI E L + P Y+ W G G P + A Sbjct: 1 MEEFGITLEALAESIQHDV--------DHPPLYRD----ARGNEWNGLGSMPDWLRAARN 48 Query: 125 EGKSLDDFLI 134 G S + F I Sbjct: 49 AGVSPEFFRI 58 >UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS8_9BURK Length = 106 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 32 KFRVVTKERREEEEQQQRELAE-RQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKR 90 F+ + + +EE +E + + ++ EL+ GI+ E+ A Sbjct: 2 DFQSAINQMKAKEEALAKEKDQLKGAALNQIRELVALFGISSAEIFTTPKKPAAAKSTVD 61 Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 K +T + +G+ P + +A+ EGK+ D Sbjct: 62 YSAFEVGKTYSDGVKTYKFASKGKRPDWLKKAIEEGKTAKDL 103 >UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EME8_BURCJ Length = 108 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 14/107 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADG----------INPEELLGN 78 M + ++ ++ + + R E + T L G + LG Sbjct: 1 MSKLAELLKQQEELAARIEAAQAEARTEGLQTVATLADQLGEPFAVEVVKMLGERFNLGE 60 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + + GK PAKY+ D + W+G+GR P +A AE Sbjct: 61 FFRTSRKRGKMVARLPAKYRHPD----GRVWSGKGRAPGWLAGHEAE 103 >UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXI1_RALEH Length = 89 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 109 WTGQGRTPKPIAQALAEGKSLDDFL 133 W GQG P + +A+ G+S++ FL Sbjct: 3 WDGQGEMPDWLRRAVNAGQSVEFFL 27 >UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T2T5_9RHOB Length = 95 Score = 40.1 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 18/98 (18%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S+ L++M + E ++ E S L + G + EL+G Sbjct: 6 LEALSLGELKKMRKDVAKAISTY---------EDRQKAEARSKVEALAQDLGYSLAELVG 56 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 + R P KY+ ++ + W +GR Sbjct: 57 TET------KTARAPAQPKYRHPNL---SLAWCSRGRQ 85 >UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JWB5_BURP8 Length = 84 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 11/76 (14%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 + +R ++ M GI +L + + A+Y+ + TW Sbjct: 2 DERKRDSMVANLRRRMAEVGIELNDLAAAIAEDEIKE-------AARYR----SATGDTW 50 Query: 110 TGQGRTPKPIAQALAE 125 +G G P+ + QA++ Sbjct: 51 SGDGEMPQWLKQAISA 66 >UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnificus RepID=Q8DF50_VIBVU Length = 167 Score = 38.6 bits (88), Expect = 0.061, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 17/139 (12%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + LQ+L L D ++ + + ++E++E ++++ E + I + Sbjct: 7 NEQLQALLQSPDLAEKLASLGGDAVQAFTKAATEAVQVQKEKQEAERKQKIE--DLIDSI 64 Query: 62 LELMKADGINPEELL--------------GNSSAAAPRAGKKRQPRPAKYKFTDVNGETK 107 ++ + I+ EE S+ + +K P +Y+ ++ E Sbjct: 65 ERDLEEESISKEEFALAIAARFKVSVAARTRSTKTSNNKERKNAPTRPQYRIV-LDDEEH 123 Query: 108 TWTGQGRTPKPIAQALAEG 126 W+G+GR+P+ A G Sbjct: 124 VWSGKGRSPEVFRAAKESG 142 >UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n=9 Tax=Gammaproteobacteria RepID=A4STY6_AERS4 Length = 154 Score = 38.2 bits (87), Expect = 0.082, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 12/117 (10%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 ++ L + + R + E++E+ V E +++ + R+ + + Sbjct: 34 VISELKRKHRVLILMRGIPLHEFREIIERLEAVYSELESDQKNRDELDKIRRAEAEKIII 93 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 M A G++ + L + K + W+GQGR P Sbjct: 94 DMNARGVDIQYLNEVIVGKSESDNAKYIK------------DGVPWSGQGRRPDVFK 138 >UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S9M9_PROA2 Length = 87 Score = 38.2 bits (87), Expect = 0.084, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E+ + I+ M ++ ++ G A A ++P+ +Y W Sbjct: 4 QREKVKVIAGIRSKMAEFDLSESDIFG----GAKPASGSKKPKMIRYYDPK---RGIKWA 56 Query: 111 GQGRTPKPIAQALAEGKSLDDFL 133 G+GR P + E LD F Sbjct: 57 GRGRKPPEFEELSQE--ELDRFR 77 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 138 6e-32 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 124 8e-28 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 120 2e-26 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 119 3e-26 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 119 3e-26 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 117 1e-25 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 117 1e-25 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 116 2e-25 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 115 3e-25 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 114 7e-25 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 114 8e-25 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 114 9e-25 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 112 5e-24 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 111 7e-24 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 110 1e-23 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 108 5e-23 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 108 6e-23 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 105 5e-22 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 102 6e-21 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 101 6e-21 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 100 1e-20 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 100 1e-20 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 99 3e-20 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 99 4e-20 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 95 8e-19 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 94 1e-18 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 94 2e-18 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 93 3e-18 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 91 8e-18 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 90 2e-17 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 90 2e-17 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 89 4e-17 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 89 5e-17 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 88 8e-17 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 87 2e-16 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 85 5e-16 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 85 9e-16 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 85 9e-16 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 85 9e-16 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 84 1e-15 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 84 1e-15 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 83 3e-15 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 82 4e-15 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 82 7e-15 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 81 9e-15 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 81 1e-14 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 81 1e-14 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 81 1e-14 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 80 1e-14 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 80 2e-14 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 80 2e-14 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 79 3e-14 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 79 3e-14 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 79 6e-14 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 79 6e-14 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 79 7e-14 UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 78 9e-14 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 78 1e-13 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 78 1e-13 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 78 1e-13 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 77 1e-13 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 77 1e-13 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 77 1e-13 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 77 2e-13 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 77 2e-13 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 77 2e-13 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 77 2e-13 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 76 3e-13 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 76 3e-13 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 76 4e-13 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 76 4e-13 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 76 4e-13 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 76 4e-13 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 76 4e-13 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 75 5e-13 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 75 5e-13 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 75 6e-13 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 75 6e-13 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 75 6e-13 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 75 8e-13 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 75 8e-13 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 75 9e-13 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 75 9e-13 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 75 1e-12 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 74 1e-12 UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 74 1e-12 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 74 1e-12 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 74 1e-12 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 74 2e-12 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 73 2e-12 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 73 2e-12 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 73 3e-12 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 73 3e-12 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 73 3e-12 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 73 3e-12 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 73 3e-12 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 73 4e-12 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 73 4e-12 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 73 4e-12 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 72 6e-12 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 72 7e-12 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 72 8e-12 UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkhol... 71 9e-12 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 71 9e-12 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 71 1e-11 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 71 1e-11 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 71 1e-11 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 70 2e-11 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 70 2e-11 UniRef50_B1FNZ3 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 70 2e-11 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 70 2e-11 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 70 2e-11 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 70 2e-11 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 70 3e-11 UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n... 70 3e-11 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 69 3e-11 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 69 4e-11 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 69 5e-11 UniRef50_B1FTJ8 Histone family protein nucleoid-structuring prot... 69 5e-11 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 69 5e-11 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 69 6e-11 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 69 7e-11 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 68 7e-11 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 68 8e-11 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 68 8e-11 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 68 8e-11 UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS4... 68 9e-11 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 68 9e-11 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 68 9e-11 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 67 2e-10 UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia a... 67 2e-10 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 67 2e-10 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 67 2e-10 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 67 2e-10 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 67 2e-10 UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia... 67 2e-10 UniRef50_B2T963 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 66 3e-10 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 66 4e-10 UniRef50_B2TE45 Histone family protein nucleoid-structuring prot... 66 4e-10 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 66 4e-10 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 65 5e-10 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 65 6e-10 UniRef50_B1KCF0 Histone family protein nucleoid-structuring prot... 65 6e-10 UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n... 65 8e-10 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 65 1e-09 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 64 1e-09 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 64 2e-09 UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriav... 64 2e-09 UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n... 63 2e-09 UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodo... 63 2e-09 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 63 2e-09 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 63 3e-09 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 63 3e-09 UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkh... 63 4e-09 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 62 5e-09 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 62 7e-09 UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n... 62 8e-09 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 61 1e-08 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 60 2e-08 UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenel... 60 2e-08 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 60 2e-08 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 59 4e-08 UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia... 59 4e-08 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 59 5e-08 UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2... 57 2e-07 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 55 6e-07 UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkhol... 55 7e-07 UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptoth... 54 1e-06 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 54 2e-06 UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthom... 53 2e-06 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 52 5e-06 UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodoba... 49 5e-05 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 48 1e-04 Sequences not found previously or not previously below threshold: UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkhol... 50 3e-05 UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkh... 48 7e-05 UniRef50_C5S5I1 Putative uncharacterized protein n=1 Tax=Allochr... 47 2e-04 UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthe... 44 0.001 UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnoba... 44 0.001 UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax... 43 0.003 UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkhol... 43 0.003 UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralston... 43 0.003 UniRef50_B2IA25 Histone family protein nucleoid-structuring prot... 42 0.005 UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnific... 42 0.009 UniRef50_UPI00006CAF87 hypothetical protein TTHERM_00467380 n=1 ... 41 0.012 UniRef50_B8KYY1 Virulence regulator n=1 Tax=Stenotrophomonas sp.... 40 0.026 UniRef50_C5AK41 Histone family protein nucleoid-structuring prot... 39 0.045 UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n... 39 0.049 UniRef50_A2EVK1 Low-density lipoprotein receptor class A, putati... 38 0.075 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 138 bits (347), Expect = 6e-32, Method: Composition-based stats. Identities = 65/134 (48%), Positives = 92/134 (68%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++L N+R+LRA++RE +++ LEE LEK + V ER+E E +++ +LAE+Q K+ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ++M GI PE+LL SA + +KR PRPAKYKF D GE KTWTGQGRTP + Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 QALAEGKSLDDFLI 134 L GK L++FLI Sbjct: 160 AQLDAGKKLEEFLI 173 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 113/134 (84%), Positives = 122/134 (91%), Gaps = 1/134 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M++MLQ+LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE QQR+LAE+QEKI+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +LELMKADGINPEEL SA PR+ KKRQPRPAKY+FTD NGE KTWTGQGRTPKPIA Sbjct: 61 FLELMKADGINPEELFAMDSA-MPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 QALAEGKSLDDFLI 134 QALA GKSLDDFLI Sbjct: 120 QALAAGKSLDDFLI 133 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++++LNN+R LR+MA+E SI+ LE ++EKF++V +E++ EE + +R ER+ ++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + EL+K DGI +EL + A KR P AKYK+ + NGE KTWTGQGR PK I Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 QALAEGKSLDDFLI 134 L GKSL DF I Sbjct: 121 LQLNAGKSLSDFAI 134 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 67/131 (51%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + L+NIR+LRA ARE + L + +EK V ER +E +++QR + E + + Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 M G++P L +S + R P KY+ D +G T W+G+G+ P AL Sbjct: 70 YMVELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAAL 129 Query: 124 AEGKSLDDFLI 134 G++ DD LI Sbjct: 130 DAGRNKDDLLI 140 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 85/134 (63%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ELM+ +GI PEEL KR PRPAKY F D NGE KTWTGQGRTP+PI Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 QALAEGKSLDDFLI 134 AL +GKSL DF I Sbjct: 121 NALNKGKSLSDFEI 134 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 59/134 (44%), Positives = 87/134 (64%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +L++L +IR LR +EF++ LE +LEKF+++T ERR+ E+ QR+ ER E+I+ Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + L+ DG+ +L+ + + R KK PR AKY++TD NG+ KTWTGQGR P + Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 QALAEGKSLDDFLI 134 L GK+L DF I Sbjct: 121 AELNTGKTLADFEI 134 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L L + R +A +E S+D L E K + ER+EEE+ + AER +I+ Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++ G++ E+L G+ +++ A KR PRP KY+ T V+GE WTGQGR P Sbjct: 61 ILAQIENSGLSIEDL-GDVTSSVKTAKTKRAPRPPKYQIT-VDGELIQWTGQGRMPTVFK 118 Query: 121 QALAEGKSLDDFLI 134 Q + GK++ +FLI Sbjct: 119 QQVDSGKNMSEFLI 132 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 1/135 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE E+ ER K+ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + E++ ADGI+P ELL + +A KR RPAKY + D NGETKTWTGQGRTP I Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 QALAE-GKSLDDFLI 134 +A+ E GKSLDDFLI Sbjct: 121 KAMDEQGKSLDDFLI 135 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ L+ L NIR+LRA R+ + L+E+ EKF V +E+ + E Q E Q+K++ Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 WLELMKADGINPEELL---GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + EL+ +G++PE+LL G ++ A A KR PRPAKY++ V GE +TWTGQGR P Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 PIAQALAEGKSLDDFLI 134 IA A+A G+SLD FLI Sbjct: 120 QIAAAIASGESLDAFLI 136 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 114 bits (286), Expect = 7e-25, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 1/132 (0%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L+NIR+LRA ARE ++L++M +KF V +E RE+ E++ +E +R + L Sbjct: 6 NVRKVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELL 65 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 E++ ++G + EEL G S + R + Q PAKY+F +VNGE + WTG+GR PK I +A Sbjct: 66 EMIASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEA 124 Query: 123 LAEGKSLDDFLI 134 +A GK LDDFLI Sbjct: 125 IAAGKKLDDFLI 136 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%) Query: 6 QSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELM 65 Q LN IR +RA ARE +++EE+ EK + + R+E + + + +ER EK+ + E++ Sbjct: 10 QGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREML 69 Query: 66 KADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 DGI+P +L + +A R PRPAKY++TD +G KTWTGQGRTP +A ALA Sbjct: 70 LQDGIDPADLADSELPRKQKAS--RAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANALAA 127 Query: 126 GKSLDDFLI 134 GK ++DFLI Sbjct: 128 GKKIEDFLI 136 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 114 bits (285), Expect = 9e-25, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+A +E ++ LE + KF V +RREEE ++QR+ +Q+KI Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 WLELMKADGINPEELLGN---SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + M GI ++L KKR P+P KY++TD NGE +TWTGQGR PK Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 PIAQALAEGKSLDDFLI 134 + A+ GKSL+ FLI Sbjct: 121 AMKTAVDNGKSLEAFLI 137 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 112 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++ N R+LRA +E S++ LEE+L KF + +R+E + + +Q K++ Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 WLELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L +K +GI+PEEL+G +S+A + KR PRPAKY + D NGETKTWTGQGR P P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IAQALAEGKSLDDFLI 134 + + + E S++++LI Sbjct: 120 LQEVMNEKGSIEEYLI 135 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 111 bits (277), Expect = 7e-24, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 86/130 (66%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+SL NIR+LRA+A++ +++ L+ + EK ++ E+ EE +Q++ E ++ E ++ + E+ Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +K DG++ +EL + + K PRPAKYKF D NG KTWTGQGRTPK + AL Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EGKSLDDFLI 134 GK L+DF I Sbjct: 124 SGKKLEDFAI 133 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ L +LR + S+ LE+++ V+T+++R EEE E+ KI + Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M+ G++ +L+ A K KY+ D G W+G+GRTP Sbjct: 61 IRQSMQDAGVDINDLMSLIGETAAPKKK----VQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 QALAEGKSLDDFLI 134 +G + DD LI Sbjct: 117 AYFDKGFTKDDCLI 130 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+ +E S++ LE + +K + R+ +E +QQ E+ EK++ Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++A G++ +L + A ++ K + RP KY D G WTG GR PK Sbjct: 61 ILAQLEAAGLDVNDL--QKAEPAKKSTKVGKKRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 QALAEGKSLDDFL 133 L GKSLD +L Sbjct: 119 AELDNGKSLDSYL 131 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L++ N+R+L A R+ SI+ LE L+K + ++R+E ++ L + K+ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + +LM+ DGI+P E S +K P P KY++ D E KTW+G GRTP+ I Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGN--VKQKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 QAL-AEGKSLDDFLI 134 A+ EGKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 61/133 (45%), Positives = 91/133 (68%), Gaps = 2/133 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + + L+NIR+ RA ARE + ++L+EM EK V +ERR + E++ E A R+EK Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 L+L++ +G EELLG+ + + K+ PAKY+F + NGETKTWTG+GR PKPIA+ Sbjct: 68 LQLIEGEGFTAEELLGDDVNISKK-RSKKPKAPAKYEFVE-NGETKTWTGKGRKPKPIAE 125 Query: 122 ALAEGKSLDDFLI 134 AL+ G++L++FLI Sbjct: 126 ALSAGRTLEEFLI 138 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 102 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 ++ L + R +A +E + L E+ EK + ++R+ +E + + + +I Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L++ G++ ++L ++RQP+P KY T V+GE TWTGQGR PKPI Sbjct: 66 LKSLIEEAGLSLDDLSST------PIKRERQPKPPKYAIT-VDGEQVTWTGQGRMPKPIK 118 Query: 121 QALAEGKSLDDFLI 134 A+ G SL+ FLI Sbjct: 119 AAIDNGASLESFLI 132 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 101 bits (252), Expect = 6e-21, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L NIRT+R RE L E EK V +ER+ E E +Q EL +++ K L Sbjct: 7 EVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKELL 66 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + ++G EEL GN + R+ KY F + NGE K W+G GR PKPI A Sbjct: 67 AFIASEGFTLEELNGNGITKRKKPPVHRK---PKYTF-EENGEMKVWSGVGRKPKPIEVA 122 Query: 123 LAEGKSLDDFLI 134 L EGK+L DFLI Sbjct: 123 LNEGKTLSDFLI 134 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L + R L+ +E S++ L++ EK V ++R E + ++ AE+ +I Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 WLELMKADGINPEELLG-NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M A G++ + ++ + ++ ++ RP KY + V+G WTG GR P Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYSIS-VDGVRTDWTGIGRMPVVF 119 Query: 120 AQALAEGKSLDDFLI 134 ++AL+ GK L+DF + Sbjct: 120 SEALSSGKQLEDFSV 134 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 L+ +NN+R+LRA A+E ID L E EK V +ER +EEE+ ++E +++E + + Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 ELMKADGINPEEL--LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + GINPEE+ ++ + R+ R KY++ D NGE + WTGQGR P+PI+ Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 QAL-AEGKSLDDFLI 134 +A+ EGK L+DFLI Sbjct: 124 EAIKNEGKKLEDFLI 138 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 99.3 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +L+SL++ R + M + S+D + ++ + + E+ E + ++++ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEKELEAKMAAEIEERERQELEA 207 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + I+ +L + K T G+ + W G G P + Sbjct: 208 LRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAALQ 267 Query: 121 QALAEGKSLDDF 132 L EG L DF Sbjct: 268 SLLDEGFELSDF 279 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 98.9 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM +K VV +ERREE E++ E E + K Sbjct: 11 GIISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQA 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQ--PRPAKYKFTDVNGETKTWTGQGRTPKPI 119 +E + + G++PE LL +A + +K + R AKY+F D NGE + W+G G+ P + Sbjct: 71 IEYIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLAL 130 Query: 120 AQALAEGKSLDDFLI 134 + L EG ++DFLI Sbjct: 131 QKLLDEGHFMEDFLI 145 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 94.7 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 +S + SL N +R + E S + ++ + ++R E ++ ++ Sbjct: 13 LSTVRTSLLNSNLVRKLIMEMSDEDFNQVKDNLEKAIEQR-----------NELKDSLAI 61 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M G+ E++ K KY++ + NG+ W+GQGR P IA Sbjct: 62 IKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIA 120 Query: 121 QALAEGKSLDDFLI 134 +A+ G SLDDFLI Sbjct: 121 EAIKAGGSLDDFLI 134 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 93.9 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 +++ L+ I +LR A+ ++ LE++ + +V +E +E E ++++K Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 LELMKADGINPEELLGNSS----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 L++++ G+N + + +K + R KY+F + NGE K W+G G+ P Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPL 129 Query: 118 PIAQALAEGKSLDDFLI 134 + + L EG SL++FLI Sbjct: 130 GLQKLLNEGHSLNEFLI 146 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 93.5 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L++ R ++ + +L ++ K + E ++E++Q + R EK S L Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L+ ++G +PEEL+ ++ + KY++ D G K W+G GR P+ I + Sbjct: 68 ALIVSEGFSPEELITVAAIKTRSRRR------MKYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 LAEGKSLDDFLI 134 L G +LDDFLI Sbjct: 121 LNSGATLDDFLI 132 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 92.8 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 16/122 (13%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 T+ + S++ L+ R E + E R + ++ + K G + Sbjct: 14 TMAKALEKMSLEELQAHQ---------RDVEATIKGYEKKRRADCLAELKAVAKKHGFSL 64 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +E G K AKY + +++TWTG+GR P + +AL+ GKSLD+F Sbjct: 65 DEFTG-----GKSGSKSGPKGVAKY--ANPADKSQTWTGRGRQPNWVKEALSSGKSLDEF 117 Query: 133 LI 134 I Sbjct: 118 AI 119 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 91.2 bits (225), Expect = 8e-18, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + +SL + LR A+ + + LE + + + +E+REE E ++ ELAE +EK + Sbjct: 12 ITSESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAI 71 Query: 63 ELMKADGINPEELLGN--SSAAAPRAGKKRQPRPAKYKFTDVN-GETKTWTGQGRTPKPI 119 + ++ G++PE + + + +K + PAKY+FT G+T TWTG GR K + Sbjct: 72 KYLEELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGL 131 Query: 120 AQALAEGKSLDDFLI 134 + G SLD+FLI Sbjct: 132 QLLIDAGHSLDEFLI 146 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 90.5 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQP 92 ++ + E++ ++ E + +L+ G+ + + +AA AGK R P Sbjct: 6 ELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAGKTRTP 65 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + +TW+G+G+ P + +A G+ +DFL+ Sbjct: 66 VAVKYRGPN----GETWSGRGKAPNWLTSLVAHGRDKNDFLV 103 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 M+ L N+R+LRA ARE S+ L+E L+KF V +ERREEEE E++ K+ + + Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 +++A+GI EEL+ A K+ KY F+D NGE KTWTGQGRTPK + Q L Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARPA-KYTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 AEGKSLDDFLI 134 G L +F I Sbjct: 120 DNGAQLSEFEI 130 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 88.9 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + L + R L+ RE LE + + E+R E +Q++ +R+EK + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L L++++G +P EL+ + A K + Y++ + NG K W+G GR P I Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 QALAEGKSLDDFLI 134 Q L GK L+ FLI Sbjct: 114 QELDAGKPLESFLI 127 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 88.5 bits (218), Expect = 5e-17, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G Sbjct: 171 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGA-RRGRRGQ 229 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 230 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 269 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 88.1 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 17 MAREFSIDVLEEMLE--KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 MA+ + LE++++ + ++ EE + E E+Q EL+++ G N + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLGNSSAAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 L G+ + GK+ R+P KY+ + ++TW+G+GR PK + L Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPE--NPSETWSGRGRKPKWVEAHLE 118 Query: 125 EGKSLDDFLI 134 G +++D LI Sbjct: 119 AGGNMEDLLI 128 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + + ++ E I+ + + G+ ++L +A R K Sbjct: 1 MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K P PAKY+ TW+G+G+ PK I GK+ + FLI Sbjct: 61 K-APLPAKYQDPKSGN---TWSGRGKPPKWIV-----GKNRERFLI 97 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 85.4 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + L + EK V E+ E+ E +++++ A ++ E Sbjct: 3 KKDLFSMQFNELWRLHEKITKVLAEKIVAEK------RELEKRLAQLNRSDVASKVDASE 56 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L A +P +K KY+ ++TW+G+G+TP A AL G+ +DDF I Sbjct: 57 LSPALVAGSPP-RRKYPRVLPKYRNPLS--PSQTWSGRGKTPHWFANALKMGRKIDDFRI 113 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 84.7 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G Sbjct: 73 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGA-RRGRRGQ 131 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 132 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 171 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 84.7 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS++L+ N RA A+E S+ LE ++ F ++ +EEE + E A + + Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L+ G+ EE+ ++ A K KY+ T V GET WTG+GRTPK Sbjct: 61 IANLIAKSGLTMEEVALLTTPKAGATKGK--TVEPKYRLT-VAGETHEWTGRGRTPKVFQ 117 Query: 121 QALAEGKSLDDFLI 134 + G S + I Sbjct: 118 EYFDAGNSRESVEI 131 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 84.7 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 R +A + M + + ++ ++ +AE + I+T E + GI PE+ Sbjct: 17 RPLANLLNRSSFTYMATYLELKAQAEALAQQAEEARIAELESIIATIREQIAEYGITPEQ 76 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L G A R P KY+ TW+G+G+ P IA A K+ D FLI Sbjct: 77 LFG---RRRAPASGTRAPVAPKYRDPKTGA---TWSGRGKAPHWIANA----KNRDRFLI 126 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 83.9 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S L + E E ++RE E+ + +EL +A G++ EE+LG Sbjct: 3 LSNLSFADLLSLKSDL---------ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLG 53 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R+P AKY TWTG+GR P + + LA GK+L+D I Sbjct: 54 KVGP-------ARKPVEAKYC--HPQNPELTWTGRGRKPLWVQELLAAGKNLEDLAI 101 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 83.9 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M +K + + E+ + AE I+ LM GI +L + S P Sbjct: 8 MSQKAALERQAAALTEQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSPVKPAKAA 67 Query: 89 K-----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + KY+ T TW+G+G P + ALA G+ +++F + Sbjct: 68 KTGGTAGRKVAVKYRNTATGD---TWSGRGLQPNWLKAALASGRKIEEFSV 115 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 82.8 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +++ + ++E ++ E Q I + + I +EL + A + Sbjct: 20 IQLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTYYNITLQELGYTNVPDDGLARRNSSK 79 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R Y+ N E +TW+G GR P+ + +AL G +DFL+ Sbjct: 80 R-VYYR----NEEGQTWSGVGRQPRWLKEALLNGMKKEDFLV 116 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAA 82 L++ +++ + KE R ++ + ER + +++ EL+K G+ +L G S+A Sbjct: 6 TLQQQIQEAEAIVKELR--KQLDEERKGERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AG KR AKY+ + KTWTG+G++P +A LA G + DDFLI Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQLAAGYTKDDFLI 112 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M ++ + + E++ ++ + E E +S + + G EL G A +A Sbjct: 27 EFMSSYKDLLAQREKLEKQIEEAKSREYAEVLSDVKQKIADYGFTLAEL-GLGRGKAGKA 85 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G+ R AKY+ + TW+G+G+ P+ I GK+ + F I Sbjct: 86 GRPRAGVAAKYRDPESGA---TWSGRGKPPRWI-----AGKNREQFAI 125 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 81.2 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 RE S+ L+++ ++ + R + RQE + + G+ +E++G Sbjct: 7 LRELSLSKLKQLQKEAALAVATRETQL---------RQEARAKLESVAAEYGLGLDEIMG 57 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + P Y+ + +TW+G+GR P + + L G L ++LI Sbjct: 58 APTLNKGG----KMSYPPLYR--NPGDPEQTWSGRGRRPLWLLKLLETGHDLSEYLI 108 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 13/121 (10%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ E S++ L+ + E+ + ++++ ++ + +E+ + G + E Sbjct: 1 MKPDISELSVEELKRLQEEAEALIASKKDQ---------AIEDAYNQIIEIAENVGFSVE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +LL + + +K + ++ + N +TWTG+G+ P+ + + +G L+DFL Sbjct: 52 QLLEFGAQKRKKTTRKS----VEPRYRNKNNAEETWTGRGKQPRWLVAEIEKGAKLEDFL 107 Query: 134 I 134 I Sbjct: 108 I 108 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E ++ + M GI+ EL G +A +A + R Sbjct: 6 ELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAARPRAGV 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ D TW+G+G+ P+ I G + FLI Sbjct: 66 APKYRDPDSGS---TWSGRGKPPRWI-----AGLDREKFLI 98 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 80.8 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ L+ E + + + + ++AE+ + I+ M A I +EL G + Sbjct: 3 DLETLKAQREILQAQLAD--IDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A K + P +Y+ + TW+G+GR PK I +D F + Sbjct: 61 PRHAAAKGKGTVPVRYRNPETGD---TWSGRGRRPKWIT----ASADVDRFRV 106 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 80.4 bits (197), Expect = 1e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 11 IRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI 70 + T+R A E L++ R E+EQ++RE R++ ++ + G+ Sbjct: 8 LETIRQAAEELDFVDLQK---------ASRMIEKEQKRREKEARKQAQQEMKQVAQKYGL 58 Query: 71 NPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE-GKSL 129 + +E++ S A K P K++ + +TWTG+GR PK + E G+ + Sbjct: 59 DLDEIVSGVSKGAGAKATKGNKVPPKFRHPE--DPDRTWTGRGRKPKWVVHWEEELGRDI 116 Query: 130 DDFLI 134 ++ I Sbjct: 117 EELRI 121 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 80.1 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 13/122 (10%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 ++ + LE + +R+ E+ +R+ ++ + G + Sbjct: 11 SMNKDLSSMTRSELETL---------KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSL 61 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 E+ G + K PAKY+ + ++TWTG+GR P AL+ G S + Sbjct: 62 AEITGMAPRKGKTGPKSSA--PAKYR--NPTDISQTWTGKGRQPAWFKDALSNGTSPEAM 117 Query: 133 LI 134 I Sbjct: 118 EI 119 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 80.1 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 4/107 (3%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAG 87 M ++ + +++ ++ AE I+ + + ++ +L G + A Sbjct: 1 MSTYQEILAQIEALKQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAA 60 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KR AKY+ W+G+G PK + L GK+ + FLI Sbjct: 61 GKRGTVKAKYRNPAAGAS---WSGRGVMPKWLKAELEAGKAKEAFLI 104 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + ++ ++ E + + E + I L+ + E++ G+SS K Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ +TW+G+G PK + GK D+ I Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL-----AGKDKADYAI 98 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 15/117 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 E + + +E+ + + V E + E + I + + GI+ E++ G Sbjct: 1 MSELNPETFQELRARLKSVA------EAAEIARKREAADAIKVIRKTVLQYGISAEDIFG 54 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + R + R P KY + TW+G+GR P+ I G++ D FLI Sbjct: 55 RARPNGGRGKR-RGPAAPKYCNPETGA---TWSGRGRPPQWI-----AGRNRDRFLI 102 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 78.5 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + + R A++ S+ L+ + ++ E +++ RE R + Sbjct: 2 LSAIAKSKTAARNAAKDLSLVELKSAIANLTAAA--KQIEVKEKTREDKRRAADLKKLQS 59 Query: 64 LMKADGINPEELLGNSSAAAP--------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 +MK G+ E + + KR P P KY+ T V GET WTG+GRT Sbjct: 60 MMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYEIT-VAGETHQWTGRGRT 118 Query: 116 PKPIAQALAEGKSLDDFLI 134 P + + G LD LI Sbjct: 119 PIVFREFMENGGDLDSCLI 137 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 78.5 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ + E + I+ L+ G+ E++ + R+ Sbjct: 10 ELLKQREQLEQQINEARRRELSDAIAQVRSLVSEYGLKAEDVF---PSGRARSASAGTKV 66 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ +TWTG+G+ PK I G++ + F I Sbjct: 67 APKYRNPATG---QTWTGRGKAPKWIQ-----GENREQFAI 99 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 78.5 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY--- 97 R ++E +R+ A + + +L + G++ +E++ + A PR + + PAK Sbjct: 17 RIDKEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMASPVFATPRKARSKTAAPAKAPLP 76 Query: 98 -KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KF N W+G+GR P + LA G SLD + Sbjct: 77 VKFRHPNNRELAWSGRGRKPHWVEAWLANGGSLDALAV 114 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 77.7 bits (190), Expect = 9e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 13/120 (10%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 R A E +++ ++ + +++ ++ E + + + + G++ ++ Sbjct: 24 RKEAVESYGEMVMATYKELLAQLDDLKQQ--AKRARALELPDVLVGLRKKIVEYGLSQKD 81 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L R K +Y+ D TWTG+GR P I G+ + F I Sbjct: 82 LF---PPRLGRPKKADALPKPRYRDPDTGA---TWTGRGRAPAWI-----AGQDRERFRI 130 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 77.7 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 17/118 (14%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S+ L+++ + + + + R AE K G + EL Sbjct: 5 DLNALSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELA 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +KR KY+ + TW+G+GR P IA AL GKSL+DF I Sbjct: 56 EMTP------AQKRAAVAPKYRHPE--NPEITWSGRGRKPAWIAGALEAGKSLEDFAI 105 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 77.7 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ ++ + K ++++ + A + + KA G + EEL G ++ Sbjct: 1 MSIDLTGLSAKQLGALIKNAKKQQTVVAKR-APIAKVRTQLTRAAKAQGYSIEELFGAAA 59 Query: 81 -----------AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 PRAG+K KY+ + +TWTG+G+ P+ +A+ A GK + Sbjct: 60 SAGPGRPAAAGKPGPRAGRKLGKVAPKYR--NPANAQETWTGRGKQPRWLAELTAAGKKV 117 Query: 130 DDFLI 134 +DFLI Sbjct: 118 EDFLI 122 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 77.7 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 21 FSIDVLEEMLEKF----RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + LE + + + T E+R +E+++R+ + +E + GI EE L Sbjct: 1 MTSKQLEAINLEAFTDQELDTLEKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEAL 60 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + + P KY+ TW+G+GRTP+ I + +G S ++ I Sbjct: 61 SDLNGRTGPSRR---RVPPKYRHPH--DPDTTWSGRGRTPRWIQEWEQQGGSREELRI 113 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ + E+ + ++ KA G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAK---------LANREKALAVVAVEKIAKAHGFTLA 51 Query: 74 ELLGNSSA-AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 EL + + +K+Q + + KF +++ KTWTG+GR P QALA GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQALAAGKTPDEM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 11/116 (9%) Query: 20 EFSIDVLEEM-LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 ID L L+K ++R E E++ L + + G+ E+++ Sbjct: 2 SIDIDSLNAADLKKLASKIEKRIVEVEKESLHL-----ALKEMRAVADKLGVAFEDVIAL 56 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K AKY + + ++TWTG+GR P + AL GKS+DD I Sbjct: 57 H---KGKGRKPSTKATAKY--ANPDDPSQTWTGRGRKPAWVNAALEAGKSIDDLAI 107 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + E E + R+ + Q+ L + + G++ EELL + ++ + + Sbjct: 18 QHDIEREIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSKTGKGQK----VQAR 73 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + ++TWTG+GR PK IA+ LA+GK+LDDF I Sbjct: 74 YQNPSDNSQTWTGRGRQPKWIAEGLAKGKALDDFRI 109 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ + ++K+ + R ++ + ER I + G+ +L ++ Sbjct: 4 TLADINSQIKKYDEQIAQLR--KQAEDLRNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWT-GQGRTPKPIAQALAEGKSLDDFLI 134 + + A K+ GE TW+ G+GR P+ + +ALA GKSL +F I Sbjct: 62 GSVKRSAGVPAVKAAAKYRGPTGE--TWSGGRGRKPRWVTEALAAGKSLSEFEI 113 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI ++ M + + + + ++ +++ I M I +EL S Sbjct: 18 LSIIIMNFMSTITELQEQLVAIQRQIDEQRALGKKQAIGEIKAKMAEFDITVDEL---ES 74 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + R ++++P KY+ +D +TW G+G P + A G + D+L+ Sbjct: 75 KGSSRGFREKKPSVIKYRKSD----AETWVGRGPKPVWVKDVEAAGGKISDYLV 124 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 13/102 (12%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + AER+ I LMK ++ +L + KR Sbjct: 17 LALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDLQE----RVQKRNSKRMS 72 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ KTW+G+GR P + G FLI Sbjct: 73 TVPKYRDPATG---KTWSGRGRQPAWL------GNDPAAFLI 105 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 12/120 (10%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + ID L E+ + ER E+Q+ L ER ++ D Sbjct: 5 KLELESMPIDDLWSFHERISKILAERITSEKQE---LEERLAVLNRGRNAFGGD------ 55 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L +S + + +K KY+ + ++TW+G+G+ P+ + A+ G+ +DDF I Sbjct: 56 -LAHSLDSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIKSGRKIDDFRI 112 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L ++ E +Q++ R + ++ SS Sbjct: 1 MSLEDLFNQVDNLNNDDFEALINHVDKQKKRRAR-DILAEAQRQASRF---------ISS 50 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + +R P +Y+ ++TW+G GR P+ + L G S D LI Sbjct: 51 AEGGKPATQRTAMPPRYRNPH--NHSQTWSGMGRQPQWFKENLEHGMSEHDMLI 102 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L R +A+ + +I+ L+ +L + E+ E ++Q + ++ + Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRP---AKYKFTDVNGETKTWTGQGRTPK 117 E + G++ ++L+ +K Y++ G+ KTW G+G P+ Sbjct: 61 MREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNVPE 116 Query: 118 PIAQALAEGKSLDDFL 133 + + L EG L DFL Sbjct: 117 EMQKMLDEGLELADFL 132 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 16/114 (14%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 LE + K + + + + + I+ ++M G+ ++ + Sbjct: 3 TLENLQAKI------AKLQAQAEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKK 56 Query: 85 RAGK-------KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 R K K KY+ TWTG GR P IA A K L D Sbjct: 57 RGRKPGVKTVAKSSASTVKYRDPKTGA---TWTGHGRAPVWIANAKDRTKYLVD 107 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P+PA Y TW+G+GR P IA A K FLI Sbjct: 129 RGPQPALYADPKTGA---TWSGRGRAPAWIASA----KDRTKFLI 166 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 15/123 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + S+D LE+++++ ++ AE + + ++ K G+ P++LL Sbjct: 5 LDQLSVDELEKLIKQAESALDKK---------RKAELKNAQAVLEKMAKNLGVAPQDLLK 55 Query: 78 NSSAAAPRAGKKRQP------RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 +S+ K RPAK KF D N TWTG+G+ P + AL++G L+D Sbjct: 56 SSTEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALSKGAKLED 115 Query: 132 FLI 134 F + Sbjct: 116 FAV 118 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 18/118 (15%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 ++D L + E + + ++ + + + + ++ + + EE+L Sbjct: 22 DLNSLNVDELRAITENAQQLIAQK---------QHQRLYDAYTQFEKIAEESNASIEEIL 72 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KY+ + + + +TWTG+GR P + +ALA G+ L+DF I Sbjct: 73 QAGEKLEKKRS-------IKYR--NTDNDEETWTGRGRKPTWLVEALAAGRRLEDFAI 121 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 10/101 (9%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + R+ +++ + E I+ + GI P E+ G S+ R+ R P Sbjct: 5 ELQNQIRQLQQQAEAMRREEASAVIAKLRAAILEFGITPAEVFGASAKQIRRSP--RSPA 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ TW+G+GR P+ I G++ DDFLI Sbjct: 63 TQKYRDPLSGA---TWSGRGRAPRWIV-----GRNRDDFLI 95 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+ L+EM ++ E+ ++++ ER+E ++ + G EL+ Sbjct: 6 KMSVAELQEMRKEID---------EQIARKKVEEREEVLAEMKAMAAKRGFEFSELVS-- 54 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + P KY+ ++TW+G+GR P I A+ +G ++DF I Sbjct: 55 ---GKSKAKAKDKLPPKYRNPK--DASQTWSGRGRKPNWIQDAVKKGAKIEDFAI 104 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ + + + + E+ + EL ER E + + G + +E+L + Sbjct: 1 MSIDLNKMSRKDLLQL--RKDVEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPA 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R K KY+ + +TWTG+GR P + AL+ G + D I Sbjct: 59 KGAARKSKAS----PKYR--NPENPDETWTGRGRKPHWVHTALSNGVDISDLEI 106 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S + LE + + E + + + + G EL Sbjct: 35 DLETLSREELEALQAEVAAAIA---------TLERQRKAQAQAELARRARELGFTLRELT 85 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G S P + ++ + +TW G+GR P+ +A+A G++ +D LI Sbjct: 86 GTSEL-----------APWELRYANPANVNQTWCGRGRKPRWFEKAMAAGRTPEDMLI 132 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 75.4 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + K R + + + E Q I +++ + PE+L + + R + Sbjct: 1 MSTYLDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFADIQRKSRRV-R 59 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R P AKY+ W+G+GR P+ I G+ + FLI Sbjct: 60 RRAPALAKYRDPASGAV---WSGRGRAPRWI-----AGQDRESFLI 97 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 75.4 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + ER ++ EL+ + E+ G + Sbjct: 1 MHQVQTLQAQLAELDRRIKAARSRERNAVLAQVRELVTGYALTAREIFGQGYSD----RA 56 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K KY+ TW+G+GR P I G+ FLI Sbjct: 57 KLFTVGVKYRDPATGA---TWSGRGRAPAWIV-----GRDRTAFLI 94 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 75.0 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S D ++ + + + +++ +ER+E + EL G+ + + S Sbjct: 1 MSHDFSGYTAQELQSLID--AATKALKEKLESERREYLRQMNELASKAGVRFQIIEDLSK 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ PAKY+ + W+G+G P+ + LA+G+ + +F I Sbjct: 59 GGGAPSTRRGAKVPAKYQNPH--NPAEKWSGRGVKPRWLQAFLAQGRDIKEFEI 110 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 74.7 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI L+ + + E R+E +S E + G + EL G + Sbjct: 9 LSIKELKNLQTQVAKAISTF---------EERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++R KY + + +TW+G+GR P +ALA GK+ +D I Sbjct: 60 T------RQRAGAAPKY--ANPDQPEQTWSGRGRKPHWFVEALAAGKTAEDLQI 105 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 74.7 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 + ELM+ +GI PEEL K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 74.7 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ ++ +EE++ + AE+ K + G + + Sbjct: 1 MKFNLKGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLD 51 Query: 74 ELLGNSSAAAPRAGKK----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 EL K R KY+ + + TWTG+GR PK + L +G +L Sbjct: 52 ELSDVKPVKRAPKAAKSSDGRAKVAPKYR--NPDDANMTWTGRGRKPKWVEAHLEKGGTL 109 Query: 130 DDFLI 134 + I Sbjct: 110 EQIAI 114 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 74.7 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 +V + + +++ + + AER + E + EL +A + Sbjct: 10 DIVKQIQELQKQADKLKAAERSTALQEVREQISVFEFTAAELGF-----KGKASLAGKKV 64 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P +YK + TWTG+G P + A+ G L+DFL+ Sbjct: 65 PTRYKD----DKGNTWTGRGHRPGWLKAAIESGAKLEDFLV 101 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 14/118 (11%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 ++ L ++ ++ E ++RE E+ ++ K G EELL Sbjct: 2 DLSTLTVSQLRDLQQQIPA---------EIKRREAQEKVNVLNELRAFAKTRGYAIEELL 52 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G + G K KY+ WTG+GR PK + +A G +L+ L+ Sbjct: 53 GKEAKVKAATGNK---VKVKYR--HPQNPELEWTGRGRKPKWVEAWVANGATLESLLV 105 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 ++ Q+ +R+ I + M+ G+ E+L AP P Y N Sbjct: 1 MKEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDAPPK-----PAAPVYM----N 51 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + W G G P + +A+ G+S++ F + Sbjct: 52 ANGQVWDGTGPMPDWLQRAVNAGQSIEHFRV 82 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E + + +S +L+ G +++ Sbjct: 30 ELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYIPEK--------TSA 81 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ TWTG+G+ P I + DDFLI Sbjct: 82 PAKYRDPATGA---TWTGRGKPPNWIKD-----QDRDDFLI 114 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 +++ + + ++E + E Q ++ E ++ + +L A + + P Sbjct: 8 KLMRQIAKLQQEAEAIRQREIQGVVARIREAIEHYQLTASDLGFGGPKRGRGAARSKVPV 67 Query: 94 PAKY-----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + + +WTG GR PK A+A G + + + Sbjct: 68 KGKAKPAVGRVRFRDANGNSWTGHGRRPKWFVDAIAAGATPESLSV 113 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Query: 50 ELAERQEKISTWLELMKADGINPEEL-----LGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 ER + I M G+ EEL + P Y+ N Sbjct: 3 AKTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NA 58 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E TW GQG P + +A+ G+SL+ + + Sbjct: 59 EGLTWDGQGEMPSWLKRAVNAGQSLEFYRV 88 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 13/118 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + + + + + KE R + ++ E+ I EL+ G++P EL + Sbjct: 2 TTSENIAAEIAELEQKLKELR--KAADEQLAREKASIIGQINELIAKYGVSPHELAFPKT 59 Query: 81 AAAPRAG----KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +A +K P KY+ TWTG+G+ P I A + D+FLI Sbjct: 60 TKGSKASSSKFQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDA----ANRDEFLI 110 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R +E+ + A R + I L L+ + PE+L ++ + GK + P KY+ Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLFSST-----KKGKAKSKAPPKYR 68 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KTWTG+G P + K+ DD+LI Sbjct: 69 DPETG---KTWTGRGPIPSWLKD-----KNRDDYLI 96 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + L ++ + E + E ++E + + M A G+ E+ + S Sbjct: 1 MDSEELAQLR------LQYHDLGERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFS 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 G PAKY+ N TWTG+G+ P Q +G ++ Sbjct: 55 KVRKPTGVSGMKVPAKYRDRATNA---TWTGRGKAPTWFNQERVQGGHIEQLR 104 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 73.1 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + ++ LAE I + G+ ++ G A + Sbjct: 6 ELKAQADELMRRVEEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPRPSGS- 64 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW+G+GR P+ I G + FLI Sbjct: 65 APRYRDPKTGA---TWSGRGREPRWIK-----GGRRERFLI 97 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 73.1 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + K R ++ + + R+ I++ ++ M+ I PEE++ Sbjct: 1 MPRETYAAQQAKIEKEIS--RLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALG 58 Query: 81 AAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 +A ++ KY +TW+G+G+ P+ + G S D Sbjct: 59 SAKSTRAAAPRRKATSDGSKRAVAPKYLHPQTG---ETWSGRGKAPRWLVAEEGNGASRD 115 Query: 131 DFLI 134 FLI Sbjct: 116 SFLI 119 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 73.1 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + ++ + + E++ + + + + I +L + G+ EEL + P+ Sbjct: 5 NLSALSASELQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKGK 64 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ P P +F + TW+G+G+ P + +A+A+G + D + Sbjct: 65 RELGPAPV--RFRHPQDASLTWSGRGKRPNWMKEAMAKGMTEDQMRV 109 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 73.1 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ S++ L+E+ + +E +QE + + G N EEL Sbjct: 6 LKDLSLEELKELRVEIAQAIT---------AQERHCKQEALEQLQAKARQLGFNLEELAP 56 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R A ++ + + W G+GR P+ QA+A GKS ++ I Sbjct: 57 AM---------QRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAMAAGKSPEELQI 104 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 17/118 (14%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + L+ + + + E +++ ++ G + +L Sbjct: 5 DLNSMDLSELKSLRKDVDAAI---------KTFEDRKKKAALAELEAKAAEMGFSLNDLT 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G+ G+ R+ P KY+ + + TW+G+GR P + +++G + +D LI Sbjct: 56 GSGG------GRGRKVNPPKYRHPE--NDALTWSGRGRQPDWYKEQVSKGTAPEDLLI 105 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E+M ++ + E E + + ER + L+ + E+ G S+ Sbjct: 13 EKMSTFHELLAQRAALEAEIEAAKAEERLIALEEVKRLVDEFAFSTREVFGTSAV----- 67 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KRQP +Y+ TW+G+GR+P I +GK F I Sbjct: 68 -RKRQPVQPRYRDPATGA---TWSGRGRSPAWI-----DGKDRSQFQI 106 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + + E +QR + +E + + G EL+GN+ A+ + K AK Sbjct: 15 KTDIDREIRQRRKQQAKEAQRELKAVAEKYGFALNELVGNAQPASGQKAK------AKAI 68 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +KTW+G+GR P+ I + +G+ +D+ + Sbjct: 69 YRHPEDPSKTWSGRGRRPRWINEWEQKGRDIDELRV 104 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ + ++++ K ++ + R ++ ER E +L + G + EL G Sbjct: 4 VKKMAAVNVDKLSLK-ELIDLDGRVKKALAMARDRERMEIKKRVADLAETHGFSVAELFG 62 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A GK + AKY + + TWTG+GR P + + L +G L DF I Sbjct: 63 --GARGRGPGKTKSVGVAKY--ANPENKLDTWTGRGRKPNWVVERLRKGAKLADFEI 115 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + +E + + E +S E + I P+++ + + R P Sbjct: 6 ELKAQLDALNKEAEAAKAREISTALSQIRETVLRYEIRPDQIFPQWTRLRSPDKR-RGPL 64 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ +TW G+GR PK + G + FLI Sbjct: 65 PPKYRNPMTG---ETWCGRGRAPKWM-----SGSPREVFLI 97 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 16/118 (13%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S++ L + E+ + + E E K G+ E++L Sbjct: 4 DLSNMSMEDLTAL---------EKDIAKAKATLEKKRIAEARKAMEMAAKEYGMTVEDVL 54 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K Q AKY + +TWTG+GR P +A+A G I Sbjct: 55 SS-----GPDRKSGQKGVAKY--ANPANPDQTWTGRGRQPTWYREAIAAGTDPASMEI 105 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE++ + ++ + + + + + T LM+ G+ +++ + + Sbjct: 55 VATLEQIQARL------KKLQAQAEAIVAKQSSAVLETIRGLMEKHGLTTKDIDAHLGSK 108 Query: 83 APRAGKKRQPRPAK------YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + Y+ TWTG GR P IA K FLI Sbjct: 109 KRGPKAGAKAAAKTAKSVAKYRDPKSGA---TWTGHGRAPAWIANV----KDRAKFLI 159 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S A+ G+++ P+PA Y+ TW+G+G P +A A K FLI Sbjct: 185 ASKSVGASGGTGQRKGPQPALYRDPKSGA---TWSGRGPAPAWLAGA----KDRTKFLI 236 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 72.0 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 21/114 (18%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE--------------LLGNSS 80 + + ++ + + + ++ ELM G+ E+ LLG + Sbjct: 7 IQARIKKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSERLLGTKT 66 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A A A + P KY+ TW+G R P I K FLI Sbjct: 67 ARAKPATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDV----KDRSKFLI 113 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA------- 81 + E ++ + +++ ++ + R ++ E M A GI +EL Sbjct: 5 IDEVVKLNQQIAELQKKSEELKKKNRPVVVAELRERMAAYGITAQELTRPVPKARMLKED 64 Query: 82 -----AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + K P PAK++ D E W+G+G PK + + +G S D+FLI Sbjct: 65 FATPIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLIEQGHSRDEFLI 119 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 11/100 (11%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 ++T+ + +Q ER I T ELM GI +L+G R + P Sbjct: 12 LLTELAELDVRIEQARARERVRAIETIHELMDTYGIKHRDLVG---RNGRRGSYQVSALP 68 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ + W G+G P I GK FLI Sbjct: 69 AKYRDPATG---REWCGRGNVPLWIR-----GKDRTRFLI 100 >UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=C4KLJ2_BURPS Length = 121 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + R +EE + +E ++ +++M I +++ R+ Sbjct: 22 LDLMKRHRALQEEIAAVRRHDTREIVTCIVQMMMMYEICLDDISDALPRQQRLG--LRRR 79 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 R KY + +TW+G GR P+ + G+ +FL Sbjct: 80 RTPKYMDPESG---RTWSGYGRPPRWM-----AGRDPAEFL 112 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 15/118 (12%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S + L +++ ++R ++ R+ AE EL + ++ EL Sbjct: 5 DLNSLSAEDLRQLMANAERTLRDRHQQRVHSLRKEAE---------ELAASLNMSVAELF 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G ++ K PAKY + +TWTG+G+ P +A ALA G+SL+ F + Sbjct: 56 GLEKSSKLANKK----LPAKY--INPANPAQTWTGRGKRPHWLADALARGESLEKFAV 107 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 71.2 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L+ + K E +++E + E+ + G E+L Sbjct: 6 LSLNELKALRSKVDRAI---------VTYEERKKKEAFAELDEIARKMGYPLAEILTMVE 56 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + AKY + ++TWTG+GR PK + ALA GKSL+D I Sbjct: 57 TKPRKT------VAAKY--ANPANPSETWTGRGRKPKWVEAALASGKSLEDLTI 102 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 71.2 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L E+ E+ V + + E+++ R L L G N + + Sbjct: 26 MTVDELWEIHERISQVLCSKIQSEQRKLDGHLSR-------LRLGVTSGANQQ---SDDE 75 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A + KY+ + TW G+G+ P + L GKS+DDFLI Sbjct: 76 SGPKPARRPYPKVYPKYRSLK--DPSLTWAGRGKQPLWLIDELKSGKSIDDFLI 127 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 70.8 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++ + I L+ A + + ++ + + ++L + + + Sbjct: 1 MSDLIEIQSQIEKLQKQASDIKAREFGKTVQDILA----KMQAFGITLKDLQPGKARGAK 56 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 G G A K P AKY+ + G W+G+G TP+ + Sbjct: 57 GKAKATKVG-----KAGAGVKPAGAPKKVALPVAAKYRGPNGEG----WSGRGLTPRWLT 107 Query: 121 QALAEGKSLDDFLI 134 L +GK+ +DF I Sbjct: 108 ALLVDGKTKEDFAI 121 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + E A ++ ++ + G + +++ G R+ AKY Sbjct: 11 KIELEARLADERRAAKEAVLTEIRACVDEFGFSLDDVFPPDG------GHGRRKVRAKYY 64 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 TW+G GR P I GK + F Sbjct: 65 DPASGA---TWSGVGREPVWIR-----GKDREQFE 91 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + ++ ++ + R E IS L L+ G+ +L + ++ + Sbjct: 7 ELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTS-TKKNKYSATKV 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ ++ E W+G+G P + GK D+LI Sbjct: 66 PAKYRDSETGSE---WSGRGIPPVWLR-----GKDKKDYLI 98 >UniRef50_B1FNZ3 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FNZ3_9BURK Length = 115 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M E ++ + +E ++ ERQ + E + G+ E+ G + A + Sbjct: 1 MNEYEQLKARADALAKEVERARCQERQGVLDDVREKVGRYGLQVVEIYGEAQVRALQCLG 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R+ KY+ + TWTG+G P+ I G++ +FLI Sbjct: 61 NRRKIAPKYRDPESGA---TWTGRGLEPRWIR-----GRNRREFLI 98 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 12/104 (11%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 L + + ++ +++ + E + I+ ++ GI ++L +K Sbjct: 4 LTYIEIQEEIKKLQKQANEIRAKEIADIIADIKVKIQLYGITEKDLGFGE-------KQK 56 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + P YK + +TW+G+GR P I + L G +L++ L Sbjct: 57 KTIFPPLYKKGN-----RTWSGRGRQPGWIKEHLEAGGNLEELL 95 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAAAPRAGKKRQ 91 ++ + R +++ + + I+ + I PEEL S+ A K ++ Sbjct: 6 QLSAQLERLQQKIDKEREKAIADAIAHIRAKIDEYDITPEELGFRPAGSSTAAATAKPKR 65 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY +TW+G+GR P + GK+ FLI Sbjct: 66 TLPPKYLNPKTG---ETWSGRGRAPAWL------GKNRGRFLI 99 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 9/100 (9%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 ++ ++ E++ + + I+ +++ G+ E++ ++ + +AG KR Sbjct: 8 LLQQKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPSAKSKPDKAG-KRSVGE 66 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K++ + TWTG+G+ PK I EGK I Sbjct: 67 PKFRNPETGA---TWTGRGKPPKWI-----EGKDRASLAI 98 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + R + E++Q AE+ ++ E + GI +L + A K + + Sbjct: 12 EIDAEIARLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAKKASEAK 71 Query: 94 PAKY-----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K + + W+G G PK +ALA GK+ D Sbjct: 72 APKAGRVAGRIKYKDDAGHAWSGYGPKPKWFTEALASGKTEADLR 116 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSS-AAAPRAGKKRQPRPAKYKFTDVNGETKTWTG 111 ER + I M G+ EEL A P P Y+ N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPKPIAQALAEGKSLDDFLI 134 QG P + +A+ G+S++ + + Sbjct: 71 QGEMPSWLKRAVNAGQSVEFYRV 93 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 24/122 (19%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +V + + + E + E +S E + + +L ++ AA A ++++ Sbjct: 6 AQVNAQIAKLQREADALKAKEVAGVVSRIKEAIAIYSLTSADLFDDAVAAVKPAARQKRT 65 Query: 93 RPA--------------------KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 A KY+ TWTG G+ P A+ GK +D Sbjct: 66 VAAAPVVGKKAPKAAAKKAESQIKYRD----EAGHTWTGHGKRPNWFKAAIEAGKKPEDL 121 Query: 133 LI 134 + Sbjct: 122 AV 123 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 26/119 (21%) Query: 16 AMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL 75 + + D L+EM + E ++R+ E+Q LE+ GI+ +L Sbjct: 2 NDLKNMNFDELQEMRIQID---------MELKKRQAKEKQNARRKILEIANTHGIDIADL 52 Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + N + + W G+GR PK I + L G +LD+ + Sbjct: 53 VSKERH-----------------YRNPNNQWELWNGRGRRPKWIKEWLENGYTLDELEV 94 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 7 SLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMK 66 + R A+ R+ + LE+++ + + + E+ +++Q+ E+ + M+ Sbjct: 19 IMCERRKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---ME 75 Query: 67 ADGINPEELLGNSSAA-APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 I +E L P K KY+ +V+G++ TWTG+GR P A+ + Sbjct: 76 EHNITADEALQIFENLFGPSTKSKSTFGKVKYRI-EVDGKSITWTGKGRRPAAFAEMSDD 134 Query: 126 GKSLDDFLI 134 L + I Sbjct: 135 --ELKKYEI 141 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 +M ++ ++ R E+E + L + E+M GI+ E A Sbjct: 8 KMTAFPELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVE------VRAGGSKR 61 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + R+ +Y + +TW+G+G PK I GK FL Sbjct: 62 ETRRHAVPRYWNPETG---QTWSGRGAEPKWIV-----GKDRSRFL 99 >UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=D0IZE2_COMTE Length = 112 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 15/101 (14%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ ++ ++ E +E ++T +L+ G +++ + Sbjct: 6 ELIAQKNALDKRIEEARSTEAKEALATVKQLIATFGFTSQQVFPWKPEEKKK-------V 58 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A+Y + TWTG+G+ PK I EGK + I Sbjct: 59 EARYYDPESGA---TWTGRGKPPKWI-----EGKDRGQYEI 91 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 5/101 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + +R + + ++ ER+ + + + G + EL A ++G Sbjct: 5 DLEALKRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSELTAAGGAKKGKSG---SVN 61 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ + + +TWTG+GR P I A A+G + I Sbjct: 62 PPKYR--NPDNPDQTWTGKGRRPDWIKAAEAKGVDISTMQI 100 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 68.9 bits (167), Expect = 4e-11, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 +M+ ++ + + E+E + L + E+M GI+ E A Sbjct: 33 KMIAFRDLLALQTKLEKEVENSRLEAEKRICERVREIMAEYGIDAE------VRAGGGRR 86 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + R+ +Y + +TW+G+G PK I GK FL Sbjct: 87 ETRRRAVPRYWNPETG---QTWSGRGGEPKWIV-----GKDRSQFL 124 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 + + E + + + +++ +R+E + ++ G EL + S+ + Sbjct: 1 MNNLEEVQGIDEQIAALQARKKELLENKRKEVLKEIKRAIQIYGFTVNELGLSGSSKKRQ 60 Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ + N +TW G G PK + + +A G L+D LI Sbjct: 61 P-----------RYANPNDPDQTWGG-GARPKWLKEYMARGGKLEDCLI 97 >UniRef50_B1FTJ8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTJ8_9BURK Length = 115 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 +E ++ ++ ++ + + E ++ ++ M I+ EL G + G Sbjct: 6 IEIAQLRAQQEALNKQLAEAKERETLLVLNEIVQKMGEYRISVSELTG------RKVGVH 59 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 AKY+ TW+G+GR P I GK ++FL Sbjct: 60 ANELAAKYRDPVSGS---TWSGRGRAPAWI-----AGKDRNEFL 95 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L+N R ++ + +E ++ K +ER++EE+ Q+ L Q I L Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKT------WTGQGRTP 116 +L + P KK+ D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 KPIAQALAEGKSLDDFLI 134 K I + L G L +F + Sbjct: 130 KWIKERLEMGFELKEFEV 147 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 15/126 (11%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + S+ L ++ E+ +Q G E Sbjct: 1 MTIDIESLSLRELGALV--------VAAEQRKQLISSRRPASAVRRMLKAAAAEAGYTLE 52 Query: 74 ELLGNSS-----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKS 128 EL G + A ++ AKY+ + + TW+G+GR P+ +A + +G Sbjct: 53 ELFGGEANEEAAPRRKPARRRTGKVAAKYRDPEY--KRLTWSGRGRMPRWLASKVQKGHK 110 Query: 129 LDDFLI 134 + DFLI Sbjct: 111 VTDFLI 116 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 68.5 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +++ +++ A +++ ++ L M GI E+ +A K Sbjct: 1 MQTIAELQAQMASIQKQINEQKAAGKRDALADILSKMNEFGITIHEIQRRIVPVKAKAAK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ E KTW+G+G+ PK + G LDD+L+ Sbjct: 61 T-----VKYRL-----EDKTWSGKGKKPKWVKNIEERGGRLDDYLV 96 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 68.1 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 13/105 (12%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE----LLGNSSAAAPRAGKK 89 ++ +++ E + ++ +E I +LM + PE+ A A ++ Sbjct: 6 ELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAASAQRE 65 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + P P KY KTW+G+GR P + GK + FLI Sbjct: 66 KAPLPPKYMDPKT---AKTWSGRGRAPAWL------GKRPERFLI 101 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 68.1 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 + + + Q + + +E+I E + L + + + + Sbjct: 6 QALSAAELKNLIASAQDQLVKGERERIKAVREKILQLLEGENLELEQVFPNSKPSPRVKN 65 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 P KY + + TW+G+G+ P +ALA GK+ + L Sbjct: 66 PVAPKY--AHPDNPSLTWSGRGKQPNWFKEALAAGKTQEQLL 105 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 68.1 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 26 LEEMLEKFRVV-TKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 + +ML + + R + + E++ + E + GI+ EELL + P Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + AKY K W+G G PK + GK+LDD+ I Sbjct: 61 RKRRTS----AKYYDPSTG---KEWSGFGPRPKWLV-----GKNLDDYRI 98 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 68.1 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 E L R E I+ + G+ +L R R A+Y+ + Sbjct: 11 ESSPAAMLRRRAEAIAWVRMQIARYGLAYADLTAAGCFPPLR----RASSKARYR----S 62 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E +TW G+G P + +A+ G+S + F + Sbjct: 63 AEGQTWDGEGDMPDWLQRAVNAGQSPEHFRV 93 >UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS42 RepID=A1W6B6_ACISJ Length = 117 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA- 86 + + R ++E+ Q E+ +S E + GI +L + + R Sbjct: 6 SQRTTQEIEAEIARLQKERDQLREGEKAGVVSRMKEAIAYYGITAADLGLSVTKRKARTG 65 Query: 87 ---GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K + + A + + +TW+G G P+ +ALA GK+ D Sbjct: 66 VAQAKNSKVQRAASRIKYKDDAGRTWSGYGPKPRWFTEALASGKTEADLR 115 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + S LE++ ++ + ++ +L A G+ E Sbjct: 1 MAIDLKNMSRKELEKLASDVGKSLEKH---------RKKDLKKVRLEMEKLAAAHGVTVE 51 Query: 74 ELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +++GN ++ A + K+ D ++KTWTG+GR P+ A+A G++ + Sbjct: 52 DIMGNKATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAIAAGQTPESM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNS-SAAAPRAGKKRQPRPAKYKFTDVNGETKT 108 E + + G ++ G + + + P AKY +T Sbjct: 26 RAEEAAGVLEDIRAKVATYGFTERDVFGRKRATQNGKKPQAGVPGEAKYLNPKTG---QT 82 Query: 109 WTGQGRTPKPIAQALAEGKSLDDFLI 134 W+G+GR P I A K+ D FLI Sbjct: 83 WSGRGRAPAWIVSA----KNRDRFLI 104 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 67.3 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 19/94 (20%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 + + + A + + E + G P+E+ + ++ R KY Sbjct: 43 KTLQATLDRERKAISAKVLQEIRECIAEFGFTPQEVFSS-----------KKKREPKYYD 91 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 TWTG GR P+ I GK F Sbjct: 92 PVSGS---TWTGLGREPEWIR-----GKDRKAFE 117 >UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z6F8_BURA4 Length = 111 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + E + E Q+ I +E+M INP + + + + G R Sbjct: 16 LEMIKRYQSLKHEIDRIRQRETQQIIRCIVEMMVVYEINPHVV--EVALSKRQRGGGRSK 73 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y +TW G+GR P + G+ DFL Sbjct: 74 AIPRYMDPVTG---RTWAGRGRRPLWM-----GGRDPADFL 106 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 26/133 (19%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + S+ L+++ ++E +R L ++ I ++ G++ +E+L Sbjct: 3 DLKNLSLPELKKLS---------VAVQKELDRRTLQSKKALIKQVQQMAAEHGLDADEML 53 Query: 77 G-------------NSSAAAPRAGKKRQPRPAKYK----FTDVNGETKTWTGQGRTPKPI 119 + + A KK+ P K K + + + W+G+GR P + Sbjct: 54 AEVGSSGREGSSVKSGAGKAAPGRKKKAPAVKKEKLPPVYWNPVNAQEGWSGRGRKPSWV 113 Query: 120 AQALAEGKSLDDF 132 L G L+ Sbjct: 114 ITFLENGGDLESL 126 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 13/104 (12%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ + + + R +S +++ + +E+ G + Sbjct: 1 METYLDLLAEREALMIKLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLR 55 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +R KY+ TW G+GR P I GK F Sbjct: 56 RRGKLKPKYRDPKTGA---TWNGRGRPPSWI-----AGKDRAAF 91 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 15/114 (13%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L ++ E+ V R E+++ L +R ++ + + Sbjct: 19 MTVDELWQLHEEIGRVLSVRLTSEKRE---LEKRLAQLRGEKGASR----------SGAE 65 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R +K AKY+ + N +TW+G+G+ P+ +A L G+S+D+F+I Sbjct: 66 TDAARERRKYPRVVAKYQ--NPNEPMETWSGRGKVPRWLAAELKSGRSIDEFVI 117 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +V + ++E + E + +S +++M+ G++ E++ R + Sbjct: 19 LDLVKRHHALQDEIDRVRRREVKRVVSCIVKMMEVYGLDLEQI----KDGVERQSSPHRE 74 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 KY KTW+G+GR P + K +D+L Sbjct: 75 VEPKYMDPQTG---KTWSGRGRMPLWMRD-----KRKEDYL 107 >UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia ambifaria RepID=B1Z177_BURA4 Length = 105 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 14/97 (14%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 K+ EE+ + LA + + ++ G +++ S A + + KY Sbjct: 10 KKALLEEQLVRERLAIATMVLLEIRQCIEEFGFGVKDVFPAQSGAPGKRRR------VKY 63 Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++W+G GR P + G+ D FLI Sbjct: 64 FNPETG---QSWSGVGREPVWLR-----GQDRDRFLI 92 >UniRef50_B2T963 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T963_BURPP Length = 89 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 19/101 (18%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + R E + +Q E ++ ++ + ++ G+ PE+L G + + Sbjct: 7 QIKARIRALEAQAEQLRRHELRQVVAEMRQKIRDYGLTPEQLFGPNLSDL---------- 56 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ + +TW G GR P I GK F + Sbjct: 57 -VRYRHPETG---ETWNGMGRPPNWIK-----GKDRGPFRV 88 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 12/108 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA------- 86 + + + + ++E ++ E ++ G+ +L + ++ Sbjct: 7 DLKAQIEELTAKAEAARVSEVAAVVADIKEKIEEYGLTASDLGFKTDKGTRKSVGQAIAE 66 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +++ KYK + + W+G+GR P L K+LDD+ + Sbjct: 67 ANEKKSVEPKYKGPN----GELWSGRGRAPVWTQN-LPTDKTLDDYKV 109 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 22/128 (17%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S+ L + R E E ++R + R++ + ++ +G++ +L+G Sbjct: 3 LGTLSLTELRRLQS---------RVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLIG 53 Query: 78 NSSAAAPRAG-----------KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 ++ A KK++ KY+ + G W+G+GR P+ +A+G Sbjct: 54 SAPVPATEKKPAAKRGRAAAGKKKEAPTVKYRHPETPGVG--WSGRGRKPQWALDWIAQG 111 Query: 127 KSLDDFLI 134 KS+++ + Sbjct: 112 KSIEELAV 119 >UniRef50_B2TE45 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2TE45_BURPP Length = 283 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 22/120 (18%) Query: 24 DVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS--- 80 LE++ K ++ + + + Q + +LM G+ ++ + Sbjct: 2 PTLEQIQAKL------KKLQAQADVLLARKAQVAVDQIRDLMLKHGLTTADIEAKAKARR 55 Query: 81 ------AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ TWTG GR P IA K FLI Sbjct: 56 AARGLNGGGKAKAVSSGKAVAKYRDHKTGA---TWTGHGRAPGWIASV----KDRTQFLI 108 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A G+ + +P KY TW+G+G P +A K FLI Sbjct: 120 AAVTHAKGSKGQPKGAQPPKYINPKTGA---TWSGRGPAPAWLASV----KDRSKFLI 170 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 13/101 (12%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++V + + E + R++ ++ ELM I P EL QP Sbjct: 8 QLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNIRYNVQPT 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW+G+G P IA + F+I Sbjct: 63 RPRYRDPVSGA---TWSGRGHVPAWIAY-----QDRSRFVI 95 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 65.4 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 12/101 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E + E Q LEL+ G++ +++ R + Sbjct: 6 ELLAQWDDLKNEIDRAREREAQRLAQRVLELLAESGVDVRDMMNPRPRGQGR----GRRI 61 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY TW+G+GR PK + G++ FLI Sbjct: 62 TPKYWNPQTGA---TWSGRGRMPKWLI-----GQNPRQFLI 94 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 65.0 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + + ++ ++ +E + + + ++ +E+ K + +++ R Sbjct: 6 KQYSRSELLELTKQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVYE---RRNS 62 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +K Y+ + N ++TWTG+GR P + + L EG + DD L Sbjct: 63 RKLAKVGLIYR--NPNNPSQTWTGKGRRPLWVLELLREGMTFDDML 106 >UniRef50_B1KCF0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF0_BURCC Length = 111 Score = 65.0 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQE--KISTWLELMKADGINPEELLGNSSAAAPRAG 87 +K ++ +E E+++ ER I ++ ++ + + A + Sbjct: 8 YQKLLEQYEQLTQEIERERAVETERLVNLVIERVRQVFAEFHLDID-----VAPRAVQEP 62 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KR+ KY + +TW G+GRTP + GK + + + Sbjct: 63 QKRKKLTPKYWNPETG---QTWCGRGRTPLWM-----AGKDRERYRV 101 >UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. 383 RepID=Q397M1_BURS3 Length = 114 Score = 64.6 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%) Query: 24 DVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAA 83 + ++V + +EE ++ ER + I+ LM I +L+G + + Sbjct: 2 QKMSASKTYAQLVVELAELDEEIERARARERVDAIAAVHSLMDTYAIKHRDLVGRNGS-- 59 Query: 84 PRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + PA+Y+ K W+G+G P I GK F++ Sbjct: 60 -RGSYIVKVLPARYRDPASG---KEWSGRGNAPLWIR-----GKDRRQFVV 101 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 64.6 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 12/105 (11%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP-----RAGKK 89 + + ++ + + + + + T LM + ++ + ++ Sbjct: 7 LQARIKKLQAQAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLGHKKRGRPALKSAGV 66 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ A+Y TWTG GR P IA A K +L+ Sbjct: 67 QKKGVARYIDPKTGA---TWTGHGRAPAWIAGA----KDRSKYLV 104 Score = 49.2 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G+ + P+PAKY+ + TW+G+G P +A K + FLI Sbjct: 115 AAVKGGTGNGQPKGPQPAKYRHPETGA---TWSGRGPAPAWLAGE----KDRNKFLI 164 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 64.3 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 18/127 (14%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + +++ L + E+ + + ++R+ + L +A+G+ Sbjct: 1 MEIDLKSYTLPQLRALREQ---------TARAIDRLQRSQRETLLRRLSALARAEGLTLA 51 Query: 74 E-------LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 E + G RQP P KY+ + W+G+GR P +A LA G Sbjct: 52 ELAEDAAAMKGAERPRKHPRTTPRQPLPVKYR--HPSNRALAWSGRGRQPHWVAAWLANG 109 Query: 127 KSLDDFL 133 S+D Sbjct: 110 GSMDALA 116 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 18/114 (15%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 L + + E + E++ ++ + E + I +E+L Sbjct: 1 MDAPTLPALRAELDA------LNIELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALG 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P+ + A++ ++W+G+G PK + GK+LDD+ I Sbjct: 55 YLQPKRRRA----AAQFYDPSSG---RSWSGRGPRPKWLV-----GKNLDDYRI 96 >UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriavidus RepID=Q46U69_RALEJ Length = 108 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 27/106 (25%) Query: 52 AERQEKISTWLELMKADGINPEELLGNSSAAAPRA-------------------GKKRQP 92 + + I+ E M + ++L+ + P Sbjct: 6 SAKLAAIAWIREQMDNYALTLDDLIAAGCFDGEPSHGDVEAGEMPGAPDVPAVMAATAAP 65 Query: 93 RPAK----YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +P K Y+ N ++W G G P + +A+ G+S+D + + Sbjct: 66 QPPKKGPIYR----NALGQSWDGTGEYPDWLQRAVNAGQSIDFYRV 107 >UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SG34_PELPB Length = 101 Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +++ Q+ ER+ + M A I EEL Sbjct: 1 MSTLTEIQAQIADLQKQAQEIINIERKAILEDIKAKMAAYNITMEEL---ERKGKAVKSA 57 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P P KYK ++ + W G+G P+ + + G++++ + + Sbjct: 58 PRSPSPIKYKKSET----EYWVGRGPKPQWVKGIESNGENIEIYRV 99 >UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodobacteraceae RepID=A9EH02_9RHOB Length = 118 Score = 63.1 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + S LE++L + + ++++ ++ A + G + + Sbjct: 4 KNELKALSRKELEKLLADVKKALSSVQARDQREAKKAATKAA---------AEFGFSLND 54 Query: 75 LLGNSS--AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + ++ + K + +K F + +TWTG+GR P + +A G + Sbjct: 55 ITETAALVPKKRKTKAKAAKKQSKPVFFNPEDTNQTWTGKGRQPNWYREQIATGMDPEAM 114 Query: 133 LI 134 I Sbjct: 115 RI 116 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 63.1 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 14/95 (14%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 E + + I LM GI+P EL G A A R K A+Y Sbjct: 12 LEIHAEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAPAHRKPK------ARYWN 65 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +TW+G+GR PK + G+ L LI Sbjct: 66 PETG---QTWSGRGRMPKWLV-----GRELASHLI 92 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 63.1 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 21/118 (17%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + +I L++ L ++ +E E++ K+ E +K I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIVEE---------ARQKEKKIKLEEIAEQVKLFDITEIELL 53 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + RQ AKY D ++W+G+G PK + GK+LDD+LI Sbjct: 54 RAAGF----VKANRQKASAKYYDPDTG---RSWSGKGARPKWLT-----GKNLDDYLI 99 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 62.7 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + Q LN + + + R + D + ++ + V ++ +E+ ++R+ AERQ KI Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L++ +GI ++L + + P Y NG+ + G GR K + Sbjct: 71 ILLRNEGIGLDDL-----EKHMVSRRSPTVEPKTYLI---NGKKIIYKGSGRMNKVLKAI 122 Query: 123 LAE-GKS-LDDFLI 134 + + G L+ +L+ Sbjct: 123 VDKEGHDALEKYLV 136 >UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A50FD Length = 99 Score = 62.7 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + + E + + + ++ + ++A GI ++ + + K AKY Sbjct: 11 KAKLEHQLELERCRLFESVVAEIVACVEAFGITERDIFKSERIDTRKRRK------AKYF 64 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 TW+G GR P+ I GK F Sbjct: 65 DPTTG---CTWSGVGREPQWIK-----GKDRSAF 90 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 62.3 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 57 KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTP 116 K WL GI+ E + R+ RPAKY+ TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYRDPR--NAENTWSGTGRRP 83 Query: 117 KPIAQALAEGKSLDDFLI 134 + + L G SLDD I Sbjct: 84 TWLKELLDSGLSLDDLKI 101 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +KR Y+ D TWTG G+ P + L G SL+ Sbjct: 6 KSEKRPKGEPVYRDPD--NPFNTWTGIGKRPAWLTAKLDAGISLEAM 50 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 61.6 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM EK VV +ERRE+ E++ E AER+ K Sbjct: 11 GIISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQEL 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 L+L+ +G +PEELLG S A K R+ K + Sbjct: 71 LQLIAGEGFSPEELLGLSEE----APKSRKKTLPKPR 103 >UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n=3 Tax=Cupriavidus RepID=Q46MF0_RALEJ Length = 589 Score = 61.6 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 13/126 (10%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 R +E + + ++ + + +Q + + + M+ ++ Sbjct: 470 TKTRKPRQEQKAPTATQSTSQSSLLAQLASVNAQLEQLRAT-VPKVVKEIQQWMQEYDLS 528 Query: 72 PEELLGNSSAAAPRAG---KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKS 128 E++ G S K + P +Y+ +TW+G+GR P I GK Sbjct: 529 IEDIAGKPSVKPAARAVPTKTKAAPPPRYRNPKTG---QTWSGRGRAPAWI------GKR 579 Query: 129 LDDFLI 134 + FLI Sbjct: 580 RERFLI 585 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 12/101 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + R + + + E+Q ++ + E ++ GI+ +E+L R K Sbjct: 7 ELEAQLRDLNIKLSEAKQKEKQAALAAFKEQVELLGISQQEVLSALGYIVQRKRKA---- 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY ++W+G+G PK + EGK L+ + Sbjct: 63 PAKYYDPSTG---RSWSGRGPRPKWL-----EGKDLETLAV 95 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 R + +F + TW+G+GR P + + L EG SL D Sbjct: 224 HEQQEEERAGREAATARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDEGGSLADL 280 >UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYC0_EIKCO Length = 97 Score = 60.4 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 12/101 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 +++ +++ E+ Q+R +ER++K++ L +M+ I+ ++ R Sbjct: 9 QLLEQKKSLEDRIQRRLASERKKKVNQILAIMRDFEISVADIEAGLKEKQSR-------- 60 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW G G+ PK I +A +G + FL+ Sbjct: 61 -PQYRNPKTGA---TWGGVGKRPKWIVEAQEKGIDIKKFLV 97 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 60.0 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 +R ++ M GI ++L + R A+Y+ + +TW+ Sbjct: 3 ERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQKT------ARYR----SATGETWS 52 Query: 111 GQGRTPKPIAQALAEGKSLDDFLI 134 G G P+ + QA++ G+S+D F + Sbjct: 53 GDGEMPQWLKQAISAGQSMDHFAV 76 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 46 QQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGE 105 + +E I+ +++ + K RP K F + + Sbjct: 23 IDKERKKRAREIIAEAQRQASRF---AQDIAPTV------SRKTASKRPPK--FANPDNP 71 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +TW+G GR P + +G + + LI Sbjct: 72 EQTWSGMGRQPDWYKAYIDKGGNEKNMLI 100 >UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7B2_9BURK Length = 103 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 17/98 (17%) Query: 36 VTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPA 95 + ++ EE+ + R E + + ++ + EEL K++ Sbjct: 8 IQRKSELEEQIAKYRALVRDEILIEIMLAIEEFHFDAEELFPAG---------KKRKVKP 58 Query: 96 KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y W+G+GR P+ + GK+ DF Sbjct: 59 RYFDPQSGAV---WSGRGREPRWLK-----GKNRRDFE 88 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 58.9 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 12/103 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKAD---------GINPEELLGNS 79 K +++ + ++ EE+++ +E +T + L++ L + Sbjct: 71 AQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRNDIAAYLGTTT 130 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 +A R KY+ +TW+G+GRTPK A Sbjct: 131 TARKDVVKTGRSEVRPKYELPGTG---ETWSGRGRTPKAFAAW 170 >UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2P0K4_XANOM Length = 130 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 9/95 (9%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP- 92 +++ + R+ E+E+ Q + A+ E +E++ G + A+ GK + P Sbjct: 16 QLLEELRKLEQEEAQLKYAQTLEAFDQVIEVLTQFGNRFNAKQKSQIASLAMTGKTKGPL 75 Query: 93 -----RPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 AKY +TW+G+GRTPK Sbjct: 76 SSTGDVVAKYWIPHSG---ETWSGRGRTPKAFKAW 107 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 55.4 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L +L ++R LRA R S++ LE L + V +E ER+ +++ Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEH---------RTREREAALAS 51 Query: 61 WLELMKADGINPEELLGNSSAAAPRAG 87 +E ++ G++ +E+L A R+ Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRSA 78 >UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkholderia RepID=B2T9F5_BURPP Length = 87 Score = 55.0 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQ 112 R+ ++ M GI E L A A Y+ N TW G Sbjct: 16 ARERLVAWIRRRMDEYGITIEALAEAIEADAAATR------AVMYRDAYGN----TWDGH 65 Query: 113 GRTPKPIAQALAEGKSLDDFL 133 G P +A+A+ G+++D F Sbjct: 66 GDKPDWLARAIYAGQNIDHFR 86 >UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXE8_LEPCP Length = 98 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E++ I LM I+P EL G A A Y+ TW Sbjct: 7 EPEKEAAIRKIRRLMAFWSISPTELRGRGVPAPRPAPAAAAVAR--YRHPVSGS---TWD 61 Query: 111 GQGRTPKPIAQA-LAEGKSLDDFLI 134 G+G P+ + +A L EG ++D + Sbjct: 62 GEGPQPQWLREALLYEGYTVDQLRV 86 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 + +RA + S+ LE+ + + ++++ +Q L+L+K G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 E+L S+ KR AKY+ +V+GE WTG+GR PK Sbjct: 51 LEDLQDTSAD-------KRTKVKAKYRI-EVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RPM6_XANCB Length = 165 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 18/122 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++ L + + + + +R E++ + L +L+G++ Sbjct: 1 MALTTLNSIDAEIKQLEARKRLIEKRDADVPKALEVLQKYAQVLTAVQRRQVAKLIGDAV 60 Query: 81 AAA------------PRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA--EG 126 AA G+K P KY+ +TW G+GR P A EG Sbjct: 61 PAAVQVARKGGGLQAGPKGRKLGPVAPKYRIP----SGETWAGRGRMPIAFTAWFASVEG 116 Query: 127 KS 128 K Sbjct: 117 KD 118 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 52.3 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 42/67 (62%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKA 67 + ELM+ Sbjct: 61 YKELMEK 67 >UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJ24_9BURK Length = 82 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 12/70 (17%) Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 M+ GI E L + P Y+ W G G P + A Sbjct: 1 MEEFGITLEALAESIQHDVD--------HPPLYRD----ARGNEWNGLGSMPDWLRAARN 48 Query: 125 EGKSLDDFLI 134 G S + F I Sbjct: 49 AGVSPEFFRI 58 >UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodobacter sphaeroides RepID=A4WW11_RHOS5 Length = 110 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ + A R + + + + + +W G+GR P A+A+G++ ++ Sbjct: 49 QIARTAKEEAARIKGEAGESGKRVSYFNPTNRSVSWNGRGRCPHWFKVAMAQGRTPEELA 108 >UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EME8_BURCJ Length = 108 Score = 48.5 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 14/107 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADG--INPEEL--------LGN 78 M + ++ ++ + + R E + T L G E + LG Sbjct: 1 MSKLAELLKQQEELAARIEAAQAEARTEGLQTVATLADQLGEPFAVEVVKMLGERFNLGE 60 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + + GK PAKY+ D + W+G+GR P +A AE Sbjct: 61 FFRTSRKRGKMVARLPAKYRHPD----GRVWSGKGRAPGWLAGHEAE 103 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREF-SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIS 59 M + ++L N R+L AR + + + ++E+ + +R++EEE++Q++ R EK++ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 TWLELMKADGINPEELLGNSSAAAPRA 86 +++ ++ +G++ +L + S Sbjct: 61 QFIQQLETEGLSITDLQFHISNRNRAR 87 >UniRef50_C5S5I1 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S5I1_CHRVI Length = 127 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 S++ ++ LE+ K+ + E+ + + + + ++ +G +PEE++ Sbjct: 4 SNLSLEEIQRQLEEADN--KKAQLEKLLKDKREEGKGAVVEQIRNIILDNGYDPEEIMNL 61 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + RQ R ++ D + ++ +G P + + +A+ Sbjct: 62 VLRRRRKLVSDRQYR----RYVDPDNPENVYS-RGVLPGWMKEKMAQ 103 >UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S9M9_PROA2 Length = 87 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E+ + I+ M ++ ++ G A A ++P+ +Y W Sbjct: 4 QREKVKVIAGIRSKMAEFDLSESDIFG----GAKPASGSKKPKMIRYYDPKRG---IKWA 56 Query: 111 GQGRTPKPIAQALAEGKSLDDFL 133 G+GR P + E LD F Sbjct: 57 GRGRKPPEFEELSQE--ELDRFR 77 >UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS8_9BURK Length = 106 Score = 43.8 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 20/109 (18%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG------ 87 + + + +EE + + + ++ EL+ GI+ E+ A Sbjct: 5 SAINQMKAKEEALAKEKDQLKGAALNQIRELVALFGISSAEIFTTPKKPAAAKSTVDYSA 64 Query: 88 ----KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 K YKF +G+ P + +A+ EGK+ D Sbjct: 65 FEVGKTYSDGVKTYKFAS----------KGKRPDWLKKAIEEGKTAKDL 103 >UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T2T5_9RHOB Length = 95 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 18/99 (18%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S+ L++M + E ++ E S L + G + EL+ Sbjct: 5 DLEALSLGELKKMRKDVAKAIS---------TYEDRQKAEARSKVEALAQDLGYSLAELV 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 G R P KY+ + + W +GR Sbjct: 56 GTE------TKTARAPAQPKYRHPN---LSLAWCSRGRQ 85 >UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JWB5_BURP8 Length = 84 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 11/75 (14%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 +R ++ M GI +L + + A+Y+ + TW+ Sbjct: 3 ERKRDSMVANLRRRMAEVGIELNDLAAAIAEDEIK-------EAARYR----SATGDTWS 51 Query: 111 GQGRTPKPIAQALAE 125 G G P+ + QA++ Sbjct: 52 GDGEMPQWLKQAISA 66 >UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXI1_RALEH Length = 89 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 109 WTGQGRTPKPIAQALAEGKSLDDFL 133 W GQG P + +A+ G+S++ FL Sbjct: 3 WDGQGEMPDWLRRAVNAGQSVEFFL 27 >UniRef50_B2IA25 Histone family protein nucleoid-structuring protein H-NS n=14 Tax=Xylella fastidiosa RepID=B2IA25_XYLF2 Length = 138 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + R+ KY +TWTG+GR P A Sbjct: 73 ERPKTRKALSADARRVVVPKYCLPHSG---ETWTGRGRLPSSFAAW 115 >UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnificus RepID=Q8DF50_VIBVU Length = 167 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 17/139 (12%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + LQ+L L D ++ + + ++ E+Q+ + ++ I + Sbjct: 7 NEQLQALLQSPDLAEKLASLGGDAVQAFTKAATEAVQVQK--EKQEAERKQKIEDLIDSI 64 Query: 62 LELMKADGINPEELLGNSSAAAPR--------------AGKKRQPRPAKYKFTDVNGETK 107 ++ + I+ EE +A +K P +Y+ ++ E Sbjct: 65 ERDLEEESISKEEFALAIAARFKVSVAARTRSTKTSNNKERKNAPTRPQYRIV-LDDEEH 123 Query: 108 TWTGQGRTPKPIAQALAEG 126 W+G+GR+P+ A G Sbjct: 124 VWSGKGRSPEVFRAAKESG 142 >UniRef50_UPI00006CAF87 hypothetical protein TTHERM_00467380 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CAF87 Length = 1116 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 1 MSVMLQSLNNIRTLRAMA--REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKI 58 MS ++ L+ L +E I L+ + +E+++E + +++ QE Sbjct: 629 MSDNIKILHQKEQLHKTLMKKESEITQLQLRVSDLEKKLEEKQDEAKLKRKLELAIQENT 688 Query: 59 STWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + ++ E + +R Sbjct: 689 KELQQQIEELQKTISEQNFEIQNRTNQERFQRHKV 723 >UniRef50_B8KYY1 Virulence regulator n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KYY1_9GAMM Length = 128 Score = 40.0 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 11/109 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI-----NPEEL 75 +++ + + + + E E+ + AE + E ++ G +L Sbjct: 3 LTLEQIRKKKAEAEALLAE--MEKAEGDALAAEAGASFAGVYETLQQFGQHYTTKQKNDL 60 Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 + R K++ D TW G GR PK Sbjct: 61 KALLEPRKAVSASAGISRAPKFQIPD----GTTWAGTGRQPKAFLAWAE 105 >UniRef50_C5AK41 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia glumae BGR1 RepID=C5AK41_BURGB Length = 85 Score = 39.2 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + ++ + ++ E I +++ ++ +L G +S++AP Sbjct: 1 MQKYLDLIGQLENLDKRIAALRTLEIPAAIEEVRAILRDLHLHSPQLFGPASSSAPLIRL 60 Query: 89 KRQPRPAKYKFTDVN-GETKTWTGQGRTP 116 RP T N + W G GR P Sbjct: 61 ASDVRP-----THQNLATGEAWPGPGRKP 84 >UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n=9 Tax=Gammaproteobacteria RepID=A4STY6_AERS4 Length = 154 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 ++ L + + R + E++E+ V E +++ + R+ + + Sbjct: 34 VISELKRKHRVLILMRGIPLHEFREIIERLEAVYSELESDQKNRDELDKIRRAEAEKIII 93 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 M A G++ + L + K + W+GQGR P Sbjct: 94 DMNARGVDIQYLNEVIVGKSESDNAKYIK------------DGVPWSGQGRRPDVFKGLS 141 Query: 124 AEGKSLDDFLI 134 A L+ + + Sbjct: 142 AV--ELERYRV 150 >UniRef50_A2EVK1 Low-density lipoprotein receptor class A, putative n=2 Tax=Trichomonas vaginalis RepID=A2EVK1_TRIVA Length = 505 Score = 38.5 bits (88), Expect = 0.075, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 35/103 (33%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 S+ + +R + +E I + E + + ++ + E + R++K Sbjct: 128 SIYTKIRAGLRRKKESLKETEITYPQAQRELLELRDEMKKFQHELDVLDRKRREKKQIWK 187 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 E A GI PE K + + + D +G Sbjct: 188 WEKRAAQGITPEMYAEKERRKHDYIYKPSKKVVVEEEVPDPDG 230 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 133 1e-30 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 120 1e-26 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 115 3e-25 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 115 4e-25 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 115 6e-25 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 113 1e-24 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 113 2e-24 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 113 2e-24 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 112 3e-24 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 110 1e-23 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 110 2e-23 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 109 2e-23 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 108 8e-23 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 107 1e-22 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 107 2e-22 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 103 2e-21 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 103 2e-21 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 102 4e-21 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 98 8e-20 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 98 9e-20 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 97 2e-19 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 96 3e-19 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 96 3e-19 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 95 5e-19 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 92 6e-18 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 92 6e-18 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 91 1e-17 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 91 1e-17 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 90 2e-17 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 90 2e-17 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 89 6e-17 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 88 7e-17 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 87 1e-16 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 87 2e-16 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 87 2e-16 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 87 2e-16 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 85 7e-16 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 85 7e-16 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 84 1e-15 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 84 1e-15 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 84 1e-15 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 84 2e-15 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 84 2e-15 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 83 2e-15 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 82 7e-15 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 81 9e-15 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 81 9e-15 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 81 9e-15 UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 80 2e-14 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 80 2e-14 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 80 3e-14 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 79 3e-14 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 79 4e-14 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 79 4e-14 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 79 6e-14 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 79 6e-14 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 79 6e-14 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 77 1e-13 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 77 1e-13 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 77 1e-13 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 77 2e-13 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 77 2e-13 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 77 2e-13 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 77 2e-13 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 77 2e-13 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 76 3e-13 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 76 3e-13 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 76 3e-13 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 76 4e-13 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 76 4e-13 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 76 4e-13 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 75 4e-13 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 75 5e-13 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 75 5e-13 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 75 5e-13 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 75 8e-13 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 75 8e-13 UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 75 9e-13 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 75 1e-12 UniRef50_B1FNZ3 Histone family protein nucleoid-structuring prot... 74 1e-12 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 74 1e-12 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 74 1e-12 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 74 1e-12 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 74 1e-12 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 74 2e-12 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkhol... 74 2e-12 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 74 2e-12 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 74 2e-12 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 74 2e-12 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 74 2e-12 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 74 2e-12 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 73 2e-12 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 73 3e-12 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 73 3e-12 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 73 3e-12 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 73 3e-12 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 73 4e-12 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 73 4e-12 UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n... 73 4e-12 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 73 4e-12 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 72 4e-12 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 72 4e-12 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 72 4e-12 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 72 5e-12 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 72 6e-12 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 72 6e-12 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 72 7e-12 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 72 7e-12 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 72 8e-12 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 72 8e-12 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 72 8e-12 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 71 9e-12 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 71 1e-11 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 71 1e-11 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 71 1e-11 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 70 1e-11 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 70 2e-11 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 70 2e-11 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 70 2e-11 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 70 2e-11 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 70 2e-11 UniRef50_B1FTJ8 Histone family protein nucleoid-structuring prot... 70 3e-11 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 70 3e-11 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 70 3e-11 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 69 3e-11 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 69 3e-11 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 69 3e-11 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 69 4e-11 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 69 4e-11 UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia a... 69 5e-11 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 69 5e-11 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 69 6e-11 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 69 6e-11 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 69 6e-11 UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS4... 69 7e-11 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 68 8e-11 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 68 9e-11 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 68 1e-10 UniRef50_B2T963 Histone family protein nucleoid-structuring prot... 67 1e-10 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 67 2e-10 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 67 2e-10 UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n... 67 2e-10 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 67 2e-10 UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n... 67 2e-10 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 66 3e-10 UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia... 66 4e-10 UniRef50_B2TE45 Histone family protein nucleoid-structuring prot... 66 4e-10 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 66 4e-10 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 66 4e-10 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 65 6e-10 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 65 7e-10 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 65 7e-10 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 65 9e-10 UniRef50_B1KCF0 Histone family protein nucleoid-structuring prot... 65 9e-10 UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n... 64 1e-09 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 64 1e-09 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 64 1e-09 UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkh... 63 3e-09 UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriav... 63 4e-09 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 62 8e-09 UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodo... 62 8e-09 UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenel... 62 8e-09 UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia... 60 3e-08 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 60 3e-08 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 59 4e-08 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 59 4e-08 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 58 6e-08 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 58 8e-08 UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2... 58 9e-08 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 58 1e-07 UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptoth... 55 9e-07 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 54 2e-06 UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkhol... 53 2e-06 UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthom... 53 3e-06 UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkh... 53 3e-06 UniRef50_C5S5I1 Putative uncharacterized protein n=1 Tax=Allochr... 53 3e-06 UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkhol... 52 5e-06 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 51 1e-05 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 50 3e-05 UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodoba... 48 8e-05 UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnoba... 47 1e-04 UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthe... 47 2e-04 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 46 4e-04 Sequences not found previously or not previously below threshold: UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax... 43 0.002 UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralston... 43 0.003 UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkhol... 42 0.006 UniRef50_B2IA25 Histone family protein nucleoid-structuring prot... 42 0.008 UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnific... 40 0.027 UniRef50_B8KYY1 Virulence regulator n=1 Tax=Stenotrophomonas sp.... 39 0.043 UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n... 38 0.091 CONVERGED! >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 65/134 (48%), Positives = 92/134 (68%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++L N+R+LRA++RE +++ LEE LEK + V ER+E E +++ +LAE+Q K+ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ++M GI PE+LL SA + +KR PRPAKYKF D GE KTWTGQGRTP + Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 QALAEGKSLDDFLI 134 L GK L++FLI Sbjct: 160 AQLDAGKKLEEFLI 173 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 113/134 (84%), Positives = 122/134 (91%), Gaps = 1/134 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M++MLQ+LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE QQR+LAE+QEKI+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +LELMKADGINPEEL SA PR+ KKRQPRPAKY+FTD NGE KTWTGQGRTPKPIA Sbjct: 61 FLELMKADGINPEELFAMDSA-MPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 QALAEGKSLDDFLI 134 QALA GKSLDDFLI Sbjct: 120 QALAAGKSLDDFLI 133 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 85/134 (63%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ELM+ +GI PEEL KR PRPAKY F D NGE KTWTGQGRTP+PI Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 QALAEGKSLDDFLI 134 AL +GKSL DF I Sbjct: 121 NALNKGKSLSDFEI 134 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++++LNN+R LR+MA+E SI+ LE ++EKF++V +E++ EE + +R ER+ ++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + EL+K DGI +EL + A KR P AKYK+ + NGE KTWTGQGR PK I Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 QALAEGKSLDDFLI 134 L GKSL DF I Sbjct: 121 LQLNAGKSLSDFAI 134 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 115 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 67/131 (51%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + L+NIR+LRA ARE + L + +EK V ER +E +++QR + E + + Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 M G++P L +S + R P KY+ D +G T W+G+G+ P AL Sbjct: 70 YMVELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAAL 129 Query: 124 AEGKSLDDFLI 134 G++ DD LI Sbjct: 130 DAGRNKDDLLI 140 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 1/135 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE E+ ER K+ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + E++ ADGI+P ELL + +A KR RPAKY + D NGETKTWTGQGRTP I Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 QALAE-GKSLDDFLI 134 +A+ E GKSLDDFLI Sbjct: 121 KAMDEQGKSLDDFLI 135 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L L + R +A +E S+D L E K + ER+EEE+ + AER +I+ Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++ G++ E+L G+ +++ A KR PRP KY+ T V+GE WTGQGR P Sbjct: 61 ILAQIENSGLSIEDL-GDVTSSVKTAKTKRAPRPPKYQIT-VDGELIQWTGQGRMPTVFK 118 Query: 121 QALAEGKSLDDFLI 134 Q + GK++ +FLI Sbjct: 119 QQVDSGKNMSEFLI 132 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 59/134 (44%), Positives = 87/134 (64%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +L++L +IR LR +EF++ LE +LEKF+++T ERR+ E+ QR+ ER E+I+ Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + L+ DG+ +L+ + + R KK PR AKY++TD NG+ KTWTGQGR P + Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 QALAEGKSLDDFLI 134 L GK+L DF I Sbjct: 121 AELNTGKTLADFEI 134 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ L+ L NIR+LRA R+ + L+E+ EKF V +E+ + E Q E Q+K++ Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 WLELMKADGINPEELL---GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + EL+ +G++PE+LL G ++ A A KR PRPAKY++ V GE +TWTGQGR P Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 PIAQALAEGKSLDDFLI 134 IA A+A G+SLD FLI Sbjct: 120 QIAAAIASGESLDAFLI 136 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+A +E ++ LE + KF V +RREEE ++QR+ +Q+KI Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 WLELMKADGINPEELLGN---SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + M GI ++L KKR P+P KY++TD NGE +TWTGQGR PK Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 PIAQALAEGKSLDDFLI 134 + A+ GKSL+ FLI Sbjct: 121 AMKTAVDNGKSLEAFLI 137 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%) Query: 6 QSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELM 65 Q LN IR +RA ARE +++EE+ EK + + R+E + + + +ER EK+ + E++ Sbjct: 10 QGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREML 69 Query: 66 KADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 DGI+P +L + +A R PRPAKY++TD +G KTWTGQGRTP +A ALA Sbjct: 70 LQDGIDPADLADSELPRKQKAS--RAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANALAA 127 Query: 126 GKSLDDFLI 134 GK ++DFLI Sbjct: 128 GKKIEDFLI 136 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 1/132 (0%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L+NIR+LRA ARE ++L++M +KF V +E RE+ E++ +E +R + L Sbjct: 6 NVRKVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELL 65 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 E++ ++G + EEL G S + R + Q PAKY+F +VNGE + WTG+GR PK I +A Sbjct: 66 EMIASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEA 124 Query: 123 LAEGKSLDDFLI 134 +A GK LDDFLI Sbjct: 125 IAAGKKLDDFLI 136 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++ N R+LRA +E S++ LEE+L KF + +R+E + + +Q K++ Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 WLELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L +K +GI+PEEL+G +S+A + KR PRPAKY + D NGETKTWTGQGR P P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IAQALAEGKSLDDFLI 134 + + + E S++++LI Sbjct: 120 LQEVMNEKGSIEEYLI 135 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 86/130 (66%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+SL NIR+LRA+A++ +++ L+ + EK ++ E+ EE +Q++ E ++ E ++ + E+ Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +K DG++ +EL + + K PRPAKYKF D NG KTWTGQGRTPK + AL Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EGKSLDDFLI 134 GK L+DF I Sbjct: 124 SGKKLEDFAI 133 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 107 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ L +LR + S+ LE+++ V+T+++R EEE E+ KI + Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M+ G++ +L+ A K KY+ D G W+G+GRTP Sbjct: 61 IRQSMQDAGVDINDLMSLIGETAAPKKK----VQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 QALAEGKSLDDFLI 134 +G + DD LI Sbjct: 117 AYFDKGFTKDDCLI 130 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+ +E S++ LE + +K + R+ +E +QQ E+ EK++ Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++A G++ +L + A ++ K + RP KY D G WTG GR PK Sbjct: 61 ILAQLEAAGLDVNDL--QKAEPAKKSTKVGKKRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 QALAEGKSLDDFL 133 L GKSLD +L Sbjct: 119 AELDNGKSLDSYL 131 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 4/135 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L++ N+R+L A R+ SI+ LE L+K + ++R+E ++ L + K+ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + +LM+ DGI+P E S +K P P KY++ D E KTW+G GRTP+ I Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGN--VKQKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 QAL-AEGKSLDDFLI 134 A+ EGKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 61/133 (45%), Positives = 91/133 (68%), Gaps = 2/133 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + + L+NIR+ RA ARE + ++L+EM EK V +ERR + E++ E A R+EK Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 L+L++ +G EELLG+ + + K+ PAKY+F + NGETKTWTG+GR PKPIA+ Sbjct: 68 LQLIEGEGFTAEELLGDDVNISKK-RSKKPKAPAKYEFVE-NGETKTWTGKGRKPKPIAE 125 Query: 122 ALAEGKSLDDFLI 134 AL+ G++L++FLI Sbjct: 126 ALSAGRTLEEFLI 138 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 98.2 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L NIRT+R RE L E EK V +ER+ E E +Q EL +++ K L Sbjct: 7 EVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKELL 66 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + ++G EEL GN + R+ KY F + NGE K W+G GR PKPI A Sbjct: 67 AFIASEGFTLEELNGNGITKRKKPPVHRK---PKYTF-EENGEMKVWSGVGRKPKPIEVA 122 Query: 123 LAEGKSLDDFLI 134 L EGK+L DFLI Sbjct: 123 LNEGKTLSDFLI 134 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 97.8 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 ++ L + R +A +E + L E+ EK + ++R+ +E + + + +I Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L++ G++ ++L ++RQP+P KY T V+GE TWTGQGR PKPI Sbjct: 66 LKSLIEEAGLSLDDLSST------PIKRERQPKPPKYAIT-VDGEQVTWTGQGRMPKPIK 118 Query: 121 QALAEGKSLDDFLI 134 A+ G SL+ FLI Sbjct: 119 AAIDNGASLESFLI 132 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 97.0 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L + R L+ +E S++ L++ EK V ++R E + ++ AE+ +I Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 WLELMKADGINPEELLG-NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M A G++ + ++ + ++ ++ RP KY V+G WTG GR P Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYSI-SVDGVRTDWTGIGRMPVVF 119 Query: 120 AQALAEGKSLDDFLI 134 ++AL+ GK L+DF + Sbjct: 120 SEALSSGKQLEDFSV 134 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 96.2 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 L+ +NN+R+LRA A+E ID L E EK V +ER +EEE+ ++E +++E + + Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 ELMKADGINPEEL--LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + GINPEE+ ++ + R+ R KY++ D NGE + WTGQGR P+PI+ Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 QAL-AEGKSLDDFLI 134 +A+ EGK L+DFLI Sbjct: 124 EAIKNEGKKLEDFLI 138 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 96.2 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +L+SL++ R + M + S+D + ++ + + E+ E + ++++ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEKELEAKMAAEIEERERQELEA 207 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + I+ +L + K T G+ + W G G P + Sbjct: 208 LRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAALQ 267 Query: 121 QALAEGKSLDDF 132 L EG L DF Sbjct: 268 SLLDEGFELSDF 279 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 95.5 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM +K VV +ERREE E++ E E + K Sbjct: 11 GIISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQA 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQ--PRPAKYKFTDVNGETKTWTGQGRTPKPI 119 +E + + G++PE LL +A + +K + R AKY+F D NGE + W+G G+ P + Sbjct: 71 IEYIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLAL 130 Query: 120 AQALAEGKSLDDFLI 134 + L EG ++DFLI Sbjct: 131 QKLLDEGHFMEDFLI 145 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 92.0 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAG 87 M ++ + E++ ++ E + +L+ G+ + + +AA AG Sbjct: 1 MATYKELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAG 60 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K R P KY+ + +TW+G+G+ P + +A G+ +DFL+ Sbjct: 61 KTRTPVAVKYRGPN----GETWSGRGKAPNWLTSLVAHGRDKNDFLV 103 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 91.6 bits (226), Expect = 6e-18, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 +S + SL N +R + E S + ++ + ++R E ++ ++ Sbjct: 13 LSTVRTSLLNSNLVRKLIMEMSDEDFNQVKDNLEKAIEQR-----------NELKDSLAI 61 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M G+ E++ K KY++ + NG+ W+GQGR P IA Sbjct: 62 IKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIA 120 Query: 121 QALAEGKSLDDFLI 134 +A+ G SLDDFLI Sbjct: 121 EAIKAGGSLDDFLI 134 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 91.2 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G Sbjct: 171 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGA-RRGRRGQ 229 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 230 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 269 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 90.8 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 +++ L+ I +LR A+ ++ LE++ + +V +E +E E ++++K Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 LELMKADGINPEELLGNSS----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 L++++ G+N + + +K + R KY+F + NGE K W+G G+ P Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPL 129 Query: 118 PIAQALAEGKSLDDFLI 134 + + L EG SL++FLI Sbjct: 130 GLQKLLNEGHSLNEFLI 146 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 16/122 (13%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 T+ + S++ L+ R E + E R + ++ + K G + Sbjct: 14 TMAKALEKMSLEELQAHQ---------RDVEATIKGYEKKRRADCLAELKAVAKKHGFSL 64 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +E G K AKY + +++TWTG+GR P + +AL+ GKSLD+F Sbjct: 65 DEFTG-----GKSGSKSGPKGVAKY--ANPADKSQTWTGRGRQPNWVKEALSSGKSLDEF 117 Query: 133 LI 134 I Sbjct: 118 AI 119 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 89.7 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L++ R ++ + +L ++ K + E ++E++Q + R EK S L Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L+ ++G +PEEL+ ++ + KY++ D G K W+G GR P+ I + Sbjct: 68 ALIVSEGFSPEELITVAAIKTRSRRRM------KYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 LAEGKSLDDFLI 134 L G +LDDFLI Sbjct: 121 LNSGATLDDFLI 132 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 88.5 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + + ++ E I+ + + G+ ++L +A R K Sbjct: 1 MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K P PAKY+ TW+G+G+ PK I GK+ + FLI Sbjct: 61 K-APLPAKYQDPKSGN---TWSGRGKPPKWIV-----GKNRERFLI 97 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 88.2 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 R +A + M + + ++ ++ +AE + I+T E + GI PE+ Sbjct: 17 RPLANLLNRSSFTYMATYLELKAQAEALAQQAEEARIAELESIIATIREQIAEYGITPEQ 76 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L G A R P KY+ TW+G+G+ P IA A K+ D FLI Sbjct: 77 LFG---RRRAPASGTRAPVAPKYRDPKTGA---TWSGRGKAPHWIANA----KNRDRFLI 126 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 17 MAREFSIDVLEEMLE--KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 MA+ + LE++++ + ++ EE + E E+Q EL+++ G N + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLGNSSAAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 L G+ + GK+ R+P KY+ + ++TW+G+GR PK + L Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPE--NPSETWSGRGRKPKWVEAHLE 118 Query: 125 EGKSLDDFLI 134 G +++D LI Sbjct: 119 AGGNMEDLLI 128 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G Sbjct: 73 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFGA-RRGRRGQ 131 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 132 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 171 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + +SL + LR A+ + + LE + + + +E+REE E ++ ELAE +EK + Sbjct: 12 ITSESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAI 71 Query: 63 ELMKADGINPEELLGN--SSAAAPRAGKKRQPRPAKYKFTDVN-GETKTWTGQGRTPKPI 119 + ++ G++PE + + + +K + PAKY+FT G+T TWTG GR K + Sbjct: 72 KYLEELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGL 131 Query: 120 AQALAEGKSLDDFLI 134 + G SLD+FLI Sbjct: 132 QLLIDAGHSLDEFLI 146 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 86.6 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 M+ L N+R+LRA ARE S+ L+E L+KF V +ERREEEE E++ K+ + + Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 +++A+GI EEL+ A K+ KY F+D NGE KTWTGQGRTPK + Q L Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARPA-KYTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 AEGKSLDDFLI 134 G L +F I Sbjct: 120 DNGAQLSEFEI 130 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 85.1 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + L + EK V E+ E+ E +++++ A ++ E Sbjct: 3 KKDLFSMQFNELWRLHEKITKVLAEKIVAEK------RELEKRLAQLNRSDVASKVDASE 56 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L A +P +K KY+ ++TW+G+G+TP A AL G+ +DDF I Sbjct: 57 LSPALVAGSPP-RRKYPRVLPKYRNPLS--PSQTWSGRGKTPHWFANALKMGRKIDDFRI 113 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 85.1 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + ++ R D E M ++ + + E++ ++ + E E +S Sbjct: 1 MTQLSEASLVKMASRPKIGAIWSDKREFMSSYKDLLAQREKLEKQIEEAKSREYAEVLSD 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + + G EL G A +AG+ R AKY+ + TW+G+G+ P+ I Sbjct: 61 VKQKIADYGFTLAEL-GLGRGKAGKAGRPRAGVAAKYRDPESGA---TWSGRGKPPRWI- 115 Query: 121 QALAEGKSLDDFLI 134 GK+ + F I Sbjct: 116 ----AGKNREQFAI 125 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M +K + + E+ + AE I+ LM GI +L + S P Sbjct: 8 MSQKAALERQAAALTEQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSPVKPAKAA 67 Query: 89 K-----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + KY+ T TW+G+G P + ALA G+ +++F + Sbjct: 68 KTGGTAGRKVAVKYRNTATGD---TWSGRGLQPNWLKAALASGRKIEEFSV 115 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 83.9 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + L + R L+ RE LE + + E+R E +Q++ +R+EK + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L L++++G +P EL+ + A K + Y++ + NG K W+G GR P I Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 QALAEGKSLDDFLI 134 Q L GK L+ FLI Sbjct: 114 QELDAGKPLESFLI 127 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 83.9 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 +++ + ++E ++ E Q I + + I +EL + A + Sbjct: 19 YIQLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTYYNITLQELGYTNVPDDGLARRNSS 78 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R Y+ N E +TW+G GR P+ + +AL G +DFL+ Sbjct: 79 KR-VYYR----NEEGQTWSGVGRQPRWLKEALLNGMKKEDFLV 116 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 83.5 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAG 87 M ++ + +++ ++ AE I+ + + ++ +L G + A Sbjct: 1 MSTYQEILAQIEALKQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAA 60 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KR AKY+ +W+G+G PK + L GK+ + FLI Sbjct: 61 GKRGTVKAKYRNPAAGA---SWSGRGVMPKWLKAELEAGKAKEAFLI 104 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 83.5 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ + + E++ ++ + E E ++ + M GI+ EL G +A +A + Sbjct: 1 MSSYKELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAAR 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R KY+ D TW+G+G+ P+ I G + FLI Sbjct: 61 PRAGVAPKYRDPDSGS---TWSGRGKPPRWI-----AGLDREKFLI 98 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 83.1 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 9/105 (8%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 L +++ + E E ++RE E+ + +EL +A G++ EE+LG Sbjct: 6 LSFADLLSLKSDLENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLGKVGP-------A 58 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R+P AKY TWTG+GR P + + LA GK+L+D I Sbjct: 59 RKPVEAKYCHP--QNPELTWTGRGRKPLWVQELLAAGKNLEDLAI 101 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS++L+ N RA A+E S+ LE ++ F ++ +EEE + E A + + Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L+ G+ EE+ ++ A K KY+ T V GET WTG+GRTPK Sbjct: 61 IANLIAKSGLTMEEVALLTTPKAGATKGK--TVEPKYRLT-VAGETHEWTGRGRTPKVFQ 117 Query: 121 QALAEGKSLDDFLI 134 + G S + I Sbjct: 118 EYFDAGNSRESVEI 131 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 81.2 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + ++ ++ E + + E + I L+ + E++ G+SS K Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ +TW+G+G PK + GK D+ I Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL-----AGKDKADYAI 98 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 81.2 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI ++ M + + + + ++ +++ I M I +EL S Sbjct: 18 LSIIIMNFMSTITELQEQLVAIQRQIDEQRALGKKQAIGEIKAKMAEFDITVDEL---ES 74 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + R ++++P KY+ +D +TW G+G P + A G + D+L+ Sbjct: 75 KGSSRGFREKKPSVIKYRKSD----AETWVGRGPKPVWVKDVEAAGGKISDYLV 124 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 81.2 bits (199), Expect = 9e-15, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 7/112 (6%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAA 82 L++ +++ + + ++ + ER + +++ EL+K G+ +L G S+A Sbjct: 6 TLQQQIQEAEAIV--KELRKQLDEERKGERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AG KR AKY+ + KTWTG+G++P +A LA G + DDFLI Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQLAAGYTKDDFLI 112 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 80.4 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 11/106 (10%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ + +++ ++ E + + + + G++ ++L R K Sbjct: 36 MATYKELLAQLDDLKQQAKRARALELPDVLVGLRKKIVEYGLSQKDLF---PPRLGRPKK 92 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ D TWTG+GR P I G+ + F I Sbjct: 93 ADALPKPRYRDPDTGA---TWTGRGRAPAWI-----AGQDRERFRI 130 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 80.1 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 13/122 (10%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 ++ + LE + +R+ E+ +R+ ++ + G + Sbjct: 11 SMNKDLSSMTRSELETL---------KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSL 61 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 E+ G + K PAKY+ + ++TWTG+GR P AL+ G S + Sbjct: 62 AEITGMAPRKGKTGPKSSA--PAKYR--NPTDISQTWTGKGRQPAWFKDALSNGTSPEAM 117 Query: 133 LI 134 I Sbjct: 118 EI 119 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 79.7 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 RE S+ L+++ ++ + R + RQE + + G+ +E++G Sbjct: 7 LRELSLSKLKQLQKEAALAVATRETQL---------RQEARAKLESVAAEYGLGLDEIMG 57 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + P Y+ + +TW+G+GR P + + L G L ++LI Sbjct: 58 APTLNKGG----KMSYPPLYR--NPGDPEQTWSGRGRRPLWLLKLLETGHDLSEYLI 108 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 15/117 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 E + + +E+ + + V E + E + I + + GI+ E++ G Sbjct: 1 MSELNPETFQELRARLKSVA------EAAEIARKREAADAIKVIRKTVLQYGISAEDIFG 54 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + R + R P KY + TW+G+GR P+ I G++ D FLI Sbjct: 55 RARPNGGRGKR-RGPAAPKYCNPETGA---TWSGRGRPPQWI-----AGRNRDRFLI 102 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 79.3 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ L+ E + + + + ++AE+ + I+ M A I +EL G + Sbjct: 3 DLETLKAQREILQ--AQLADIDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A K + P +Y+ + TW+G+GR PK I + +D F + Sbjct: 61 PRHAAAKGKGTVPVRYRNPETGD---TWSGRGRRPKWITAS----ADVDRFRV 106 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 78.9 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 13/121 (10%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ E S++ L+ + E+ + ++++ ++ + +E+ + G + E Sbjct: 1 MKPDISELSVEELKRLQEEAEALIASKKDQA---------IEDAYNQIIEIAENVGFSVE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +LL + + +K +Y+ + N +TWTG+G+ P+ + + +G L+DFL Sbjct: 52 QLLEFGAQKRKKTTRKS--VEPRYR--NKNNAEETWTGRGKQPRWLVAEIEKGAKLEDFL 107 Query: 134 I 134 I Sbjct: 108 I 108 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 78.5 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ + E + I+ L+ G+ E++ + R+ Sbjct: 10 ELLKQREQLEQQINEARRRELSDAIAQVRSLVSEYGLKAEDVF---PSGRARSASAGTKV 66 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ +TWTG+G+ PK I G++ + F I Sbjct: 67 APKYRNPATG---QTWTGRGKAPKWIQ-----GENREQFAI 99 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 78.5 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 11 IRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI 70 + T+R A E L++ R E+EQ++RE R++ ++ + G+ Sbjct: 8 LETIRQAAEELDFVDLQKAS---------RMIEKEQKRREKEARKQAQQEMKQVAQKYGL 58 Query: 71 NPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE-GKSL 129 + +E++ S A K P K++ + +TWTG+GR PK + E G+ + Sbjct: 59 DLDEIVSGVSKGAGAKATKGNKVPPKFRHPE--DPDRTWTGRGRKPKWVVHWEEELGRDI 116 Query: 130 DDFLI 134 ++ I Sbjct: 117 EELRI 121 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 78.5 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + K R + + + E Q I +++ + PE+L + + R + Sbjct: 1 MSTYLDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFADIQRKSRRV-R 59 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R P AKY+ W+G+GR P+ I G+ + FLI Sbjct: 60 RRAPALAKYRDPASGA---VWSGRGRAPRWI-----AGQDRESFLI 97 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 17/118 (14%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S+ L+++ + + + + R AE K G + EL Sbjct: 5 DLNALSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELA 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +KR KY+ + TW+G+GR P IA AL GKSL+DF I Sbjct: 56 EMTP------AQKRAAVAPKYRHPE--NPEITWSGRGRKPAWIAGALEAGKSLEDFAI 105 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 21 FSIDVLEEML----EKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + LE + + T E+R +E+++R+ + +E + GI EE L Sbjct: 1 MTSKQLEAINLEAFTDQELDTLEKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEAL 60 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + + P KY+ TW+G+GRTP+ I + +G S ++ I Sbjct: 61 SDLNGRTGPSRR---RVPPKYRHPH--DPDTTWSGRGRTPRWIQEWEQQGGSREELRI 113 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + ER ++ EL+ + E+ G + Sbjct: 1 MHQVQTLQAQLAELDRRIKAARSRERNAVLAQVRELVTGYALTAREIFGQGYSD----RA 56 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K KY+ TW+G+GR P I G+ FLI Sbjct: 57 KLFTVGVKYRDPATGA---TWSGRGRAPAWIV-----GRDRTAFLI 94 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 13/103 (12%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 ++ + + + AER+ I LMK ++ +L + KR Sbjct: 16 YLALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDLQE----RVQKRNSKRM 71 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ KTW+G+GR P + G FLI Sbjct: 72 STVPKYRDPATG---KTWSGRGRQPAWL------GNDPAAFLI 105 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + ++ L+++ + +E +R+ A + + +L + G++ +E++ Sbjct: 3 LDQLTLPQLKQLSGRID---------KEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMA 53 Query: 78 NSSAAAPRAGKKRQPRPAKY----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + A PR + + PAK KF N W+G+GR P + LA G SLD Sbjct: 54 SPVFATPRKARSKTAAPAKAPLPVKFRHPNNRELAWSGRGRKPHWVEAWLANGGSLDALA 113 Query: 134 I 134 + Sbjct: 114 V 114 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 +V + + +++ + + AER + E + EL +A Sbjct: 5 QSSYKDIVKQIQELQKQADKLKAAERSTALQEVREQISVFEFTAAELGF-----KGKASL 59 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + P +YK + TWTG+G P + A+ G L+DFL+ Sbjct: 60 AGKKVPTRYKD----DKGNTWTGRGHRPGWLKAAIESGAKLEDFLV 101 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 5/112 (4%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 +++ + + ++E + E Q ++ E ++ + +L A Sbjct: 2 ATKTYSKLMRQIAKLQQEAEAIRQREIQGVVARIREAIEHYQLTASDLGFGGPKRGRGAA 61 Query: 88 KKRQPRPAKY-----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + P K + + +WTG GR PK A+A G + + + Sbjct: 62 RSKVPVKGKAKPAVGRVRFRDANGNSWTGHGRRPKWFVDAIAAGATPESLSV 113 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ + E+ + ++ KA G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAK---------LANREKALAVVAVEKIAKAHGFTLA 51 Query: 74 ELLGNSSA-AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 EL + + +K+Q + + KF +++ KTWTG+GR P QALA GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQALAAGKTPDEM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 15/121 (12%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + S L ++ + K+ ER E + + G + + Sbjct: 1 MSIDLNKMSRKDLLQLRKDVEKALKDAEL---------RERTEALKAAEQAAAEYGFSLD 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 E+L + A R K KY+ + +TWTG+GR P + AL+ G + D Sbjct: 52 EVLSGPAKGAARKSKAS----PKYRNPE--NPDETWTGRGRKPHWVHTALSNGVDISDLE 105 Query: 134 I 134 I Sbjct: 106 I 106 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 14/121 (11%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + L+++ K E+ + E + + G+ E Sbjct: 1 MSIDIDSLNAADLKKLASKI---------EKRIVEVEKESLHLALKEMRAVADKLGVAFE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +++ + K AKY + + ++TWTG+GR P + AL GKS+DD Sbjct: 52 DVIALH---KGKGRKPSTKATAKY--ANPDDPSQTWTGRGRKPAWVNAALEAGKSIDDLA 106 Query: 134 I 134 I Sbjct: 107 I 107 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 75.8 bits (185), Expect = 3e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + + R A++ S+ L+ + ++ E +++ RE R + Sbjct: 2 LSAIAKSKTAARNAAKDLSLVELKSAIANLTAAA--KQIEVKEKTREDKRRAADLKKLQS 59 Query: 64 LMKADGINPEELLGNSSAAAP--------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 +MK G+ E + + KR P P KY+ T V GET WTG+GRT Sbjct: 60 MMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYEIT-VAGETHQWTGRGRT 118 Query: 116 PKPIAQALAEGKSLDDFLI 134 P + + G LD LI Sbjct: 119 PIVFREFMENGGDLDSCLI 137 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 12/120 (10%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + ID L E+ + ER E+Q+ L ER ++ D Sbjct: 5 KLELESMPIDDLWSFHERISKILAERITSEKQE---LEERLAVLNRGRNAFGGD------ 55 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L +S + + +K KY+ + ++TW+G+G+ P+ + A+ G+ +DDF I Sbjct: 56 -LAHSLDSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIKSGRKIDDFRI 112 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 + + E E + R+ + Q+ L + + G++ EELL + ++ Sbjct: 12 AELKGLQHDIEREIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSKTGKGQK-- 69 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ + + ++TWTG+GR PK IA+ LA+GK+LDDF I Sbjct: 70 --VQARYQNPSDNSQTWTGRGRQPKWIAEGLAKGKALDDFRI 109 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 14/113 (12%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + K + + + + + I+ ++M G+ ++ + R K Sbjct: 1 MTTLENLQAKIAKLQAQAEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKKRGRK 60 Query: 89 KRQPRPAK-------YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AK Y+ TWTG GR P IA A K +L+ Sbjct: 61 PGVKTVAKSSASTVKYRDPKTGA---TWTGHGRAPVWIANA----KDRTKYLV 106 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P+PA Y TW+G+GR P IA A K FLI Sbjct: 129 RGPQPALYADPKTGA---TWSGRGRAPAWIASA----KDRTKFLI 166 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 75.4 bits (184), Expect = 4e-13, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + ++ LAE I + G+ ++ G A + Sbjct: 1 MSGYRELKAQADELMRRVEEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPR 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW+G+GR P+ I G + FLI Sbjct: 61 PSGS-APRYRDPKTGA---TWSGRGREPRWIK-----GGRRERFLI 97 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 9/116 (7%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE--LLGNS 79 ++ + ++K+ + + ++ + ER I + G+ + L Sbjct: 4 TLADINSQIKKYD--EQIAQLRKQAEDLRNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWT-GQGRTPKPIAQALAEGKSLDDFLI 134 + AG AKY+ +TW+ G+GR P+ + +ALA GKSL +F I Sbjct: 62 GSVKRSAGVPAVKAAAKYRGP----TGETWSGGRGRKPRWVTEALAAGKSLSEFEI 113 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +E + + E +S E + I P+++ + + Sbjct: 1 MATYEELKAQLDALNKEAEAAKAREISTALSQIRETVLRYEIRPDQIFPQWTRLRSPDKR 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P P KY+ +TW G+GR PK + G + FLI Sbjct: 61 -RGPLPPKYRNPMTG---ETWCGRGRAPKWM-----SGSPREVFLI 97 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 75.4 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 10/101 (9%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + R+ +++ + E I+ + GI P E+ G S+ R P Sbjct: 5 ELQNQIRQLQQQAEAMRREEASAVIAKLRAAILEFGITPAEVFGASA--KQIRRSPRSPA 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ TW+G+GR P+ I G++ DDFLI Sbjct: 63 TQKYRDPLSGA---TWSGRGRAPRWIV-----GRNRDDFLI 95 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 74.7 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 15/127 (11%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + S+D LE+++++ ++ AE + + ++ K G+ P+ Sbjct: 1 MSINLDQLSVDELEKLIKQAESALDKK---------RKAELKNAQAVLEKMAKNLGVAPQ 51 Query: 74 ELLGNSSAAAPRAGKKRQP------RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 +LL +S+ K RPAK KF D N TWTG+G+ P + AL++G Sbjct: 52 DLLKSSTEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALSKGA 111 Query: 128 SLDDFLI 134 L+DF + Sbjct: 112 KLEDFAV 118 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 74.7 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 18/118 (15%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 ++D L + E + + Q++ + + + ++ + + EE+L Sbjct: 22 DLNSLNVDELRAITENAQQL---------IAQKQHQRLYDAYTQFEKIAEESNASIEEIL 72 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KY+ + + + +TWTG+GR P + +ALA G+ L+DF I Sbjct: 73 QAGEKLEKKRS-------IKYR--NTDNDEETWTGRGRKPTWLVEALAAGRRLEDFAI 121 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 74.7 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E + + +S +L+ G +++ Sbjct: 30 ELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYIPEK--------TSA 81 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ TWTG+G+ P I + DDFLI Sbjct: 82 PAKYRDPATGA---TWTGRGKPPNWIKD-----QDRDDFLI 114 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS- 79 SID+ ++ + K ++++ + + + KA G + EEL G + Sbjct: 1 MSIDLTGLSAKQLGALIKNAKKQQTVVAKRA-PIAKVRTQLTRAAKAQGYSIEELFGAAA 59 Query: 80 ----------SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 PRAG+K KY+ + +TWTG+G+ P+ +A+ A GK + Sbjct: 60 SAGPGRPAAAGKPGPRAGRKLGKVAPKYR--NPANAQETWTGRGKQPRWLAELTAAGKKV 117 Query: 130 DDFLI 134 +DFLI Sbjct: 118 EDFLI 122 >UniRef50_B1FNZ3 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FNZ3_9BURK Length = 115 Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M E ++ + +E ++ ERQ + E + G+ E+ G + A + Sbjct: 1 MNEYEQLKARADALAKEVERARCQERQGVLDDVREKVGRYGLQVVEIYGEAQVRALQCLG 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R+ KY+ + TWTG+G P+ I G++ +FLI Sbjct: 61 NRRKIAPKYRDPESGA---TWTGRGLEPRWIR-----GRNRREFLI 98 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 74.3 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+ L+EM + +E+ ++++ ER+E ++ + G EL+ Sbjct: 6 KMSVAELQEMR---------KEIDEQIARKKVEEREEVLAEMKAMAAKRGFEFSELVS-- 54 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + P KY+ ++TW+G+GR P I A+ +G ++DF I Sbjct: 55 ---GKSKAKAKDKLPPKYRNPK--DASQTWSGRGRKPNWIQDAVKKGAKIEDFAI 104 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 ++ Q+ +R+ I + M+ G+ E+L AP P Y N Sbjct: 1 MKEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDAPPK-----PAAPVYM----N 51 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + W G G P + +A+ G+S++ F + Sbjct: 52 ANGQVWDGTGPMPDWLQRAVNAGQSIEHFRV 82 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 20/118 (16%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S + LE + E + + + + G EL Sbjct: 35 DLETLSREELEALQA---------EVAAAIATLERQRKAQAQAELARRARELGFTLRELT 85 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G S P + ++ + +TW G+GR P+ +A+A G++ +D LI Sbjct: 86 GTSEL-----------APWELRYANPANVNQTWCGRGRKPRWFEKAMAAGRTPEDMLI 132 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L R +A+ + +I+ L+ +L + E+ E ++Q + ++ + Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRP---AKYKFTDVNGETKTWTGQGRTPK 117 E + G++ ++L+ +K Y++ G+ KTW G+G P+ Sbjct: 61 MREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNVPE 116 Query: 118 PIAQALAEGKSLDDFL 133 + + L EG L DFL Sbjct: 117 EMQKMLDEGLELADFL 132 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 17/118 (14%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + L+ + + + E +++ ++ G + +L Sbjct: 5 DLNSMDLSELKSLRKDVDAA---------IKTFEDRKKKAALAELEAKAAEMGFSLNDLT 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G+ G+ R+ P KY+ + + TW+G+GR P + +++G + +D LI Sbjct: 56 GSGG------GRGRKVNPPKYRHPE--NDALTWSGRGRQPDWYKEQVSKGTAPEDLLI 105 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E+M ++ + E E + + ER + L+ + E+ G S+ Sbjct: 13 EKMSTFHELLAQRAALEAEIEAAKAEERLIALEEVKRLVDEFAFSTREVFGTSAV----- 67 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KRQP +Y+ TW+G+GR+P I +GK F I Sbjct: 68 -RKRQPVQPRYRDPATGA---TWSGRGRSPAWI-----DGKDRSQFQI 106 >UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=C4KLJ2_BURPS Length = 121 Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 ++ + R +EE + +E ++ +++M I +++ R+ Sbjct: 21 YLDLMKRHRALQEEIAAVRRHDTREIVTCIVQMMMMYEICLDDISDALPRQQRLG--LRR 78 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 R KY + +TW+G GR P+ + G+ +FL Sbjct: 79 RRTPKYMDPESG---RTWSGYGRPPRWM-----AGRDPAEFL 112 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI L+ + + + E R+E +S E + G + EL G + Sbjct: 9 LSIKELKNLQTQV---------AKAISTFEERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++R KY + + +TW+G+GR P +ALA GK+ +D I Sbjct: 60 T------RQRAGAAPKY--ANPDQPEQTWSGRGRKPHWFVEALAAGKTAEDLQI 105 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 11/108 (10%) Query: 31 EKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK-- 88 E + K + + ++ E+ I EL+ G++P EL + +A Sbjct: 10 EIAELEQKLKELRKAADEQLAREKASIIGQINELIAKYGVSPHELAFPKTTKGSKASSSK 69 Query: 89 --KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K P KY+ TWTG+G+ P I A + D+FLI Sbjct: 70 FQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDA----ANRDEFLI 110 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S D ++ + + + +++ +ER+E + EL G+ + + S Sbjct: 1 MSHDFSGYTAQELQSLID--AATKALKEKLESERREYLRQMNELASKAGVRFQIIEDLSK 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ PAKY+ + W+G+G P+ + LA+G+ + +F I Sbjct: 59 GGGAPSTRRGAKVPAKYQNPH--NPAEKWSGRGVKPRWLQAFLAQGRDIKEFEI 110 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 15/125 (12%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ ++ +EE++ + AE+ K + G + + Sbjct: 1 MKFNLKGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLD 51 Query: 74 ELLGNSSAAAPRAGKK----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 EL K R KY+ D TWTG+GR PK + L +G +L Sbjct: 52 ELSDVKPVKRAPKAAKSSDGRAKVAPKYRNPD--DANMTWTGRGRKPKWVEAHLEKGGTL 109 Query: 130 DDFLI 134 + I Sbjct: 110 EQIAI 114 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 14/118 (11%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 ++ L ++ ++ E ++RE E+ ++ K G EELL Sbjct: 2 DLSTLTVSQLRDLQQQIP---------AEIKRREAQEKVNVLNELRAFAKTRGYAIEELL 52 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G A KY+ WTG+GR PK + +A G +L+ L+ Sbjct: 53 G---KEAKVKAATGNKVKVKYRHP--QNPELEWTGRGRKPKWVEAWVANGATLESLLV 105 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 73.5 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R +E+ + A R + I L L+ + PE+L ++ + GK + P KY+ Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLFSST-----KKGKAKSKAPPKYR 68 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KTWTG+G P + K+ DD+LI Sbjct: 69 DPETG---KTWTGRGPIPSWLKD-----KNRDDYLI 96 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 73.1 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA------- 81 + E ++ + +++ ++ + R ++ E M A GI +EL Sbjct: 5 IDEVVKLNQQIAELQKKSEELKKKNRPVVVAELRERMAAYGITAQELTRPVPKARMLKED 64 Query: 82 -----AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + K P PAK++ D E W+G+G PK + + +G S D+FLI Sbjct: 65 FATPIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLIEQGHSRDEFLI 119 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 73.1 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 16/121 (13%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + S++ L + E+ + + E E K G+ E Sbjct: 1 MGIDLSNMSMEDLTAL---------EKDIAKAKATLEKKRIAEARKAMEMAAKEYGMTVE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++L + K Q AKY + +TWTG+GR P +A+A G Sbjct: 52 DVLSS-----GPDRKSGQKGVAKY--ANPANPDQTWTGRGRQPTWYREAIAAGTDPASME 104 Query: 134 I 134 I Sbjct: 105 I 105 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 9/89 (10%) Query: 51 LAERQEKISTWLELMKADGINPEEL-----LGNSSAAAPRAGKKRQPRPAKYKFTDVNGE 105 ER + I M G+ EEL + P Y+ N E Sbjct: 4 KTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NAE 59 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW GQG P + +A+ G+SL+ + + Sbjct: 60 GLTWDGQGEMPSWLKRAVNAGQSLEFYRV 88 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 21/114 (18%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE--------------LLGNSS 80 + + ++ + + + ++ ELM G+ E+ LLG + Sbjct: 7 IQARIKKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSERLLGTKT 66 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A A A + P KY+ TW+G R P I K FLI Sbjct: 67 ARAKPATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDV----KDRSKFLI 113 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + L ++ + E + E ++E + + M A G+ E+ + S Sbjct: 1 MDSEELAQLR------LQYHDLGERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFS 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 G PAKY+ N TWTG+G+ P Q +G ++ Sbjct: 55 KVRKPTGVSGMKVPAKYRDRATNA---TWTGRGKAPTWFNQERVQGGHIEQLR 104 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 11/108 (10%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAAAPRA 86 M ++ + R +++ + + I+ + I PEEL S+ A Sbjct: 1 MATYRQLSAQLERLQQKIDKEREKAIADAIAHIRAKIDEYDITPEELGFRPAGSSTAAAT 60 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K ++ P KY +TW+G+GR P + GK+ FLI Sbjct: 61 AKPKRTLPPKYLNPKTG---ETWSGRGRAPAWL------GKNRGRFLI 99 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L ++ E +Q++ R + ++ SS Sbjct: 1 MSLEDLFNQVDNLNNDDFEALINHVDKQKKRRAR-DILAEAQRQASRF---------ISS 50 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + +R P +Y+ ++TW+G GR P+ + L G S D LI Sbjct: 51 AEGGKPATQRTAMPPRYRNPH--NHSQTWSGMGRQPQWFKENLEHGMSEHDMLI 102 >UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=D0IZE2_COMTE Length = 112 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 15/106 (14%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ ++ ++ ++ E +E ++T +L+ G +++ + Sbjct: 1 MPSYQELIAQKNALDKRIEEARSTEAKEALATVKQLIATFGFTSQQVFPWKPEEKKK--- 57 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A+Y + TWTG+G+ PK I EGK + I Sbjct: 58 ----VEARYYDPESGA---TWTGRGKPPKWI-----EGKDRGQYEI 91 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 11 IRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI 70 + + + R + + + ++ + ++ + + + + + T LM+ G+ Sbjct: 37 LESTHGIVRTSTTEGATAVATLEQIQARLKKLQAQAEAIVAKQSSAVLETIRGLMEKHGL 96 Query: 71 NPEELLGNSSAAAPRAGKKRQPRPAK------YKFTDVNGETKTWTGQGRTPKPIAQALA 124 +++ + + + Y+ TWTG GR P IA Sbjct: 97 TTKDIDAHLGSKKRGPKAGAKAAAKTAKSVAKYRDPKSGA---TWTGHGRAPAWIANV-- 151 Query: 125 EGKSLDDFLI 134 K FLI Sbjct: 152 --KDRAKFLI 159 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S A+ G+++ P+PA Y+ TW+G+G P +A A K FLI Sbjct: 185 ASKSVGASGGTGQRKGPQPALYRDPKSGA---TWSGRGPAPAWLAGA----KDRTKFLI 236 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 11/104 (10%) Query: 31 EKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKR 90 R++T+ + +Q ER I T ELM GI +L+G R + Sbjct: 8 TYQRLLTELAELDVRIEQARARERVRAIETIHELMDTYGIKHRDLVG---RNGRRGSYQV 64 Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ + W G+G P I GK FLI Sbjct: 65 SALPAKYRDPATG---REWCGRGNVPLWIR-----GKDRTRFLI 100 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ + ++++ K ++ + R ++ ER E +L + G + EL G Sbjct: 4 VKKMAAVNVDKLSLK-ELIDLDGRVKKALAMARDRERMEIKKRVADLAETHGFSVAELFG 62 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A GK + AKY + + TWTG+GR P + + L +G L DF I Sbjct: 63 --GARGRGPGKTKSVGVAKY--ANPENKLDTWTGRGRKPNWVVERLRKGAKLADFEI 115 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 15/124 (12%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + K + R ++ + + R+ I++ ++ M+ I PEE++ Sbjct: 1 MPRETYAAQQAKIEK--EISRLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALG 58 Query: 81 AAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 +A ++ KY +TW+G+G+ P+ + G S D Sbjct: 59 SAKSTRAAAPRRKATSDGSKRAVAPKYLHPQTG---ETWSGRGKAPRWLVAEEGNGASRD 115 Query: 131 DFLI 134 FLI Sbjct: 116 SFLI 119 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 15/118 (12%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 +S+ L ++ E +QR + +E + + G EL+ Sbjct: 2 DLSGYSVSELNKLKTDID---------REIRQRRKQQAKEAQRELKAVAEKYGFALNELV 52 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 GN+ A+ + K AK + +KTW+G+GR P+ I + +G+ +D+ + Sbjct: 53 GNAQPASGQKAK------AKAIYRHPEDPSKTWSGRGRRPRWINEWEQKGRDIDELRV 104 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 72.0 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 + ELM+ +GI PEEL K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 72.0 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + ++ ++ + R E IS L L+ G+ +L + ++ + Sbjct: 7 ELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTS-TKKNKYSATKV 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ ++ E W+G+G P + GK D+LI Sbjct: 66 PAKYRDSETGSE---WSGRGIPPVWLR-----GKDKKDYLI 98 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 72.0 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 24/122 (19%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +V + + + E + E +S E + + +L ++ AA A ++++ Sbjct: 6 AQVNAQIAKLQREADALKAKEVAGVVSRIKEAIAIYSLTSADLFDDAVAAVKPAARQKRT 65 Query: 93 RPA--------------------KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 A KY+ TWTG G+ P A+ GK +D Sbjct: 66 VAAAPVVGKKAPKAAAKKAESQIKYRD----EAGHTWTGHGKRPNWFKAAIEAGKKPEDL 121 Query: 133 LI 134 + Sbjct: 122 AV 123 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 49/107 (45%), Gaps = 2/107 (1%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + ++ + + E++ + + + + I +L + G+ EEL + P+ Sbjct: 5 NLSALSASELQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKGK 64 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ P P +F + TW+G+G+ P + +A+A+G + D + Sbjct: 65 RELGPAPV--RFRHPQDASLTWSGRGKRPNWMKEAMAKGMTEDQMRV 109 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 +M ++ ++ R E+E + L + E+M GI+ E A Sbjct: 8 KMTAFPELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVE------VRAGGSKR 61 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + R+ +Y + +TW+G+G PK I GK FL Sbjct: 62 ETRRHAVPRYWNPETG---QTWSGRGAEPKWIV-----GKDRSRFL 99 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 15/118 (12%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S + L +++ ++R ++ R+ AE EL + ++ EL Sbjct: 5 DLNSLSAEDLRQLMANAERTLRDRHQQRVHSLRKEAE---------ELAASLNMSVAELF 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G ++ K PAKY + +TWTG+G+ P +A ALA G+SL+ F + Sbjct: 56 GLEKSSKLANKK----LPAKY--INPANPAQTWTGRGKRPHWLADALARGESLEKFAV 107 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 + ++ ++ E++ + + I+ +++ G+ E++ ++ + +AG K Sbjct: 3 SDYKALLQQKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPSAKSKPDKAG-K 61 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R K++ + TWTG+G+ PK I EGK I Sbjct: 62 RSVGEPKFRNPETGA---TWTGRGKPPKWI-----EGKDRASLAI 98 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 12/104 (11%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 L + + ++ +++ + E + I+ ++ GI ++L +K Sbjct: 4 LTYIEIQEEIKKLQKQANEIRAKEIADIIADIKVKIQLYGITEKDLGFGE-------KQK 56 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + P YK + +TW+G+GR P I + L G +L++ L Sbjct: 57 KTIFPPLYKKGN-----RTWSGRGRQPGWIKEHLEAGGNLEELL 95 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 71.2 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 +M+ ++ + + E+E + L + E+M GI+ E A Sbjct: 33 KMIAFRDLLALQTKLEKEVENSRLEAEKRICERVREIMAEYGIDAE------VRAGGGRR 86 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + R+ +Y + +TW+G+G PK I GK FL Sbjct: 87 ETRRRAVPRYWNPETG---QTWSGRGGEPKWIV-----GKDRSQFL 124 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 71.2 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE----LLGNSSAAAP 84 M ++ +++ E + ++ +E I +LM + PE+ A Sbjct: 1 MATYKELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAA 60 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A +++ P P KY KTW+G+GR P + GK + FLI Sbjct: 61 SAQREKAPLPPKYMDPKT---AKTWSGRGRAPAWL------GKRPERFLI 101 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 70.8 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 5/111 (4%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + + R + E++Q AE+ ++ E + GI +L + A Sbjct: 6 SQRTAQEIDAEIARLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAK 65 Query: 88 KKRQPRPAKY-----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K + + K + + W+G G PK +ALA GK+ D Sbjct: 66 KASEAKAPKAGRVAGRIKYKDDAGHAWSGYGPKPKWFTEALASGKTEADLR 116 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 70.8 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 14/105 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M+ R + E A ++ ++ + G + +++ G Sbjct: 1 MIAYQRFKELKIELEARLADERRAAKEAVLTEIRACVDEFGFSLDDVFPPDG------GH 54 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 R+ AKY TW+G GR P I GK + F Sbjct: 55 GRRKVRAKYYDPASGA---TWSGVGREPVWIR-----GKDREQFE 91 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 70.4 bits (171), Expect = 1e-11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 31 EKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKR 90 + + +R + + ++ ER+ + + + G + EL A ++G Sbjct: 2 TRKDLEALKRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSELTAAGGAKKGKSG--- 58 Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ D +TWTG+GR P I A A+G + I Sbjct: 59 SVNPPKYRNPD--NPDQTWTGKGRRPDWIKAAEAKGVDISTMQI 100 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 23/125 (18%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + ++ + +++ + E + + L M+A GI ++L + A K Sbjct: 1 MSDLIEIQSQIEKLQKQASDIKAREFGKTVQDILAKMQAFGITLKDLQPGKARGAKGKAK 60 Query: 89 KRQ-------------------PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 + P AKY+ + G W+G+G TP+ + L +GK+ Sbjct: 61 ATKVGKAGAGVKPAGAPKKVALPVAAKYRGPNGEG----WSGRGLTPRWLTALLVDGKTK 116 Query: 130 DDFLI 134 +DF I Sbjct: 117 EDFAI 121 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 + + E + + + +++ +R+E + ++ G EL + S+ + Sbjct: 1 MNNLEEVQGIDEQIAALQARKKELLENKRKEVLKEIKRAIQIYGFTVNELGLSGSSKKRQ 60 Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ + N +TW G G PK + + +A G L+D LI Sbjct: 61 P-----------RYANPNDPDQTWGG-GARPKWLKEYMARGGKLEDCLI 97 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 70.4 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 26 LEEMLEKFR-VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 + +ML + + R + + E++ + E + GI+ EELL + P Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + AKY K W+G G PK + GK+LDD+ I Sbjct: 61 RKRRTS----AKYYDPSTG---KEWSGFGPRPKWLV-----GKNLDDYRI 98 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L E+ E+ V + + E+++ R L L G N + + Sbjct: 26 MTVDELWEIHERISQVLCSKIQSEQRKLDGHLSR-------LRLGVTSGANQQ---SDDE 75 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A + KY+ + TW G+G+ P + L GKS+DDFLI Sbjct: 76 SGPKPARRPYPKVYPKYRSLK--DPSLTWAGRGKQPLWLIDELKSGKSIDDFLI 127 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ S++ L+E+ + +E +QE + + G N EEL Sbjct: 6 LKDLSLEELKELR---------VEIAQAITAQERHCKQEALEQLQAKARQLGFNLEELAP 56 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R A ++ + + W G+GR P+ QA+A GKS ++ I Sbjct: 57 AM---------QRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAMAAGKSPEELQI 104 >UniRef50_B1FTJ8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTJ8_9BURK Length = 115 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 +E ++ ++ ++ + + E ++ ++ M I+ EL G + G Sbjct: 6 IEIAQLRAQQEALNKQLAEAKERETLLVLNEIVQKMGEYRISVSELTG------RKVGVH 59 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 AKY+ TW+G+GR P I GK ++FL Sbjct: 60 ANELAAKYRDPVSGS---TWSGRGRAPAWI-----AGKDRNEFL 95 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 15/126 (11%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + S+ L ++ E+ +Q G E Sbjct: 1 MTIDIESLSLRELGALV--------VAAEQRKQLISSRRPASAVRRMLKAAAAEAGYTLE 52 Query: 74 ELLGNSS-----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKS 128 EL G + A ++ AKY+ + + TW+G+GR P+ +A + +G Sbjct: 53 ELFGGEANEEAAPRRKPARRRTGKVAAKYRDPEY--KRLTWSGRGRMPRWLASKVQKGHK 110 Query: 129 LDDFLI 134 + DFLI Sbjct: 111 VTDFLI 116 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 17/118 (14%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S++ L+ + K E +++E + E+ + G E+L Sbjct: 2 DIDALSLNELKALRSKVD---------RAIVTYEERKKKEAFAELDEIARKMGYPLAEIL 52 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + AKY + ++TWTG+GR PK + ALA GKSL+D I Sbjct: 53 TMVETKPRKT------VAAKY--ANPANPSETWTGRGRKPKWVEAALASGKSLEDLTI 102 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSS-AAAPRAGKKRQPRPAKYKFTDVNGETKTWTG 111 ER + I M G+ EEL A P P Y+ N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPKPIAQALAEGKSLDDFLI 134 QG P + +A+ G+S++ + + Sbjct: 71 QGEMPSWLKRAVNAGQSVEFYRV 93 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 26/119 (21%) Query: 16 AMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL 75 + + D L+EM + E ++R+ E+Q LE+ GI+ +L Sbjct: 2 NDLKNMNFDELQEMRIQID---------MELKKRQAKEKQNARRKILEIANTHGIDIADL 52 Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + N + + W G+GR PK I + L G +LD+ + Sbjct: 53 VSKERH-----------------YRNPNNQWELWNGRGRRPKWIKEWLENGYTLDELEV 94 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +++ +++ A +++ ++ L M GI E+ +A K Sbjct: 1 MQTIAELQAQMASIQKQINEQKAAGKRDALADILSKMNEFGITIHEIQRRIVPVKAKAAK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ E KTW+G+G+ PK + G LDD+L+ Sbjct: 61 T-----VKYRL-----EDKTWSGKGKKPKWVKNIEERGGRLDDYLV 96 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 69.3 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 12/106 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ + + E + E Q LEL+ G++ +++ Sbjct: 1 MKTYSELLAQWDDLKNEIDRAREREAQRLAQRVLELLAESGVDVRDMMNPRPRGQG---- 56 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + KY TW+G+GR PK + G++ FLI Sbjct: 57 RGRRITPKYWNPQTGA---TWSGRGRMPKWLI-----GQNPRQFLI 94 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 68.9 bits (167), Expect = 4e-11, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 19/105 (18%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + A + + E + G P+E+ + Sbjct: 32 MNSYQEYKQHVKTLQATLDRERKAISAKVLQEIRECIAEFGFTPQEVFSS---------- 81 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ R KY TWTG GR P+ I GK F Sbjct: 82 -KKKREPKYYDPVSGS---TWTGLGREPEWIR-----GKDRKAFE 117 >UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z6F8_BURA4 Length = 111 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 ++ + + + E + E Q+ I +E+M INP + + + + G R Sbjct: 15 YLEMIKRYQSLKHEIDRIRQRETQQIIRCIVEMMVVYEINPHVV--EVALSKRQRGGGRS 72 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y +TW G+GR P + G+ DFL Sbjct: 73 KAIPRYMDPVTG---RTWAGRGRRPLWM-----GGRDPADFL 106 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + S LE++ ++ + ++ +L A G+ E Sbjct: 1 MAIDLKNMSRKELEKLASDVGKSLEKH---------RKKDLKKVRLEMEKLAAAHGVTVE 51 Query: 74 ELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +++GN ++ A + K+ D ++KTWTG+GR P+ A+A G++ + Sbjct: 52 DIMGNKATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAIAAGQTPESM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L+N R ++ + +E ++ K +ER++EE+ Q+ L Q I L Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKT------WTGQGRTP 116 +L + P KK+ D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 KPIAQALAEGKSLDDFLI 134 K I + L G L +F + Sbjct: 130 KWIKERLEMGFELKEFEV 147 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 13/105 (12%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 ++V + + E + R++ ++ ELM I P EL Sbjct: 4 KSYSQLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNIRYN 58 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 QP +Y+ TW+G+G P IA + F+I Sbjct: 59 VQPTRPRYRDPVSGA---TWSGRGHVPAWIAY-----QDRSRFVI 95 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 13/104 (12%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ + + + R +S +++ + +E+ G + Sbjct: 1 METYLDLLAEREALMIKLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLR 55 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +R KY+ TW G+GR P I GK F Sbjct: 56 RRGKLKPKYRDPKTGA---TWNGRGRPPSWI-----AGKDRAAF 91 >UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS42 RepID=A1W6B6_ACISJ Length = 117 Score = 68.5 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA- 86 + + R ++E+ Q E+ +S E + GI +L + + R Sbjct: 6 SQRTTQEIEAEIARLQKERDQLREGEKAGVVSRMKEAIAYYGITAADLGLSVTKRKARTG 65 Query: 87 ---GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K + + A + + +TW+G G P+ +ALA GK+ D Sbjct: 66 VAQAKNSKVQRAASRIKYKDDAGRTWSGYGPKPRWFTEALASGKTEADLR 115 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 68.1 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 15/120 (12%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + S L+ ++ +++ + E + L+L++ + + E Sbjct: 1 MSIDLQALSAAELKNLIA---------SAQDQLVKGERERIKAVREKILQLLEGENLELE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ + + + + P KY + + TW+G+G+ P +ALA GK+ + L Sbjct: 52 QVF----PNSKPSPRVKNPVAPKY--AHPDNPSLTWSGRGKQPNWFKEALAAGKTQEQLL 105 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 68.1 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 7/129 (5%) Query: 7 SLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMK 66 + R A+ R+ + LE+++ + + + E+ +++Q+ E+ + M+ Sbjct: 19 IMCERRKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---ME 75 Query: 67 ADGINPEELLGNSSAA-APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 I +E L P K KY+ +V+G++ TWTG+GR P A+ + Sbjct: 76 EHNITADEALQIFENLFGPSTKSKSTFGKVKYRI-EVDGKSITWTGKGRRPAAFAEMSDD 134 Query: 126 GKSLDDFLI 134 L + I Sbjct: 135 --ELKKYEI 141 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 67.7 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNS-SAAAPRAGKKRQPRPAKYKFTDVNGETKT 108 E + + G ++ G + + + P AKY +T Sbjct: 26 RAEEAAGVLEDIRAKVATYGFTERDVFGRKRATQNGKKPQAGVPGEAKYLNPKTG---QT 82 Query: 109 WTGQGRTPKPIAQALAEGKSLDDFLI 134 W+G+GR P I A K+ D FLI Sbjct: 83 WSGRGRAPAWIVSA----KNRDRFLI 104 >UniRef50_B2T963 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T963_BURPP Length = 89 Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 19/101 (18%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + R E + +Q E ++ ++ + ++ G+ PE+L G + + Sbjct: 7 QIKARIRALEAQAEQLRRHELRQVVAEMRQKIRDYGLTPEQLFGPNLSDL---------- 56 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ + +TW G GR P I GK F + Sbjct: 57 -VRYRHPETG---ETWNGMGRPPNWIK-----GKDRGPFRV 88 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 12/102 (11%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 +V + ++E + E + +S +++M+ G++ E++ + Sbjct: 18 YLDLVKRHHALQDEIDRVRRREVKRVVSCIVKMMEVYGLDLEQIKDGVERQSSPHR---- 73 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 KY KTW+G+GR P + K +D+L Sbjct: 74 EVEPKYMDPQTG---KTWSGRGRMPLWMRD-----KRKEDYL 107 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 48 QRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETK 107 L R E I+ + G+ +L R + A+Y+ + E + Sbjct: 15 AAMLRRRAEAIAWVRMQIARYGLAYADLTAAGCFPPLRRASSK----ARYR----SAEGQ 66 Query: 108 TWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW G+G P + +A+ G+S + F + Sbjct: 67 TWDGEGDMPDWLQRAVNAGQSPEHFRV 93 >UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n=3 Tax=Cupriavidus RepID=Q46MF0_RALEJ Length = 589 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 13/126 (10%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 R +E + + ++ + + +Q + + + M+ ++ Sbjct: 470 TKTRKPRQEQKAPTATQSTSQSSLLAQLASVNAQLEQLRAT-VPKVVKEIQQWMQEYDLS 528 Query: 72 PEELLGNSSAAAPRAG---KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKS 128 E++ G S K + P +Y+ +TW+G+GR P I GK Sbjct: 529 IEDIAGKPSVKPAARAVPTKTKAAPPPRYRNPKTG---QTWSGRGRAPAWI------GKR 579 Query: 129 LDDFLI 134 + FLI Sbjct: 580 RERFLI 585 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 12/111 (10%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + ++ + + + + + T LM + ++ + Sbjct: 1 MATLEALQARIKKLQAQAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLGHKKRGRPA 60 Query: 89 KR-----QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + A+Y TWTG GR P IA A K +L+ Sbjct: 61 LKSAGVQKKGVARYIDPKTGA---TWTGHGRAPAWIAGA----KDRSKYLV 104 Score = 48.9 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G+ + P+PAKY+ + TW+G+G P +A K + FLI Sbjct: 115 AAVKGGTGNGQPKGPQPAKYRHPETGA---TWSGRGPAPAWLAGE----KDRNKFLI 164 >UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. 383 RepID=Q397M1_BURS3 Length = 114 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 11/112 (9%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + + ++V + +EE ++ ER + I+ LM I +L+G + + Sbjct: 1 MQKMSASKTYAQLVVELAELDEEIERARARERVDAIAAVHSLMDTYAIKHRDLVGRNGS- 59 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + PA+Y+ K W+G+G P I GK F++ Sbjct: 60 --RGSYIVKVLPARYRDPASG---KEWSGRGNAPLWIR-----GKDRRQFVV 101 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 66.2 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 17/134 (12%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + +L A ++D L ++ E+ V R E+++ L +R ++ Sbjct: 1 MSDLWTRSEMNTSLNLDA--MTVDELWQLHEEIGRVLSVRLTSEKRE---LEKRLAQLRG 55 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + + A R +K AKY+ + +TW+G+G+ P+ +A Sbjct: 56 EKGASR----------SGAETDAARERRKYPRVVAKYQNPNE--PMETWSGRGKVPRWLA 103 Query: 121 QALAEGKSLDDFLI 134 L G+S+D+F+I Sbjct: 104 AELKSGRSIDEFVI 117 >UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia ambifaria RepID=B1Z177_BURA4 Length = 105 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 ML + K+ EE+ + LA + + ++ G +++ S A + + Sbjct: 1 MLVYKSFMEKKALLEEQLVRERLAIATMVLLEIRQCIEEFGFGVKDVFPAQSGAPGKRRR 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY + ++W+G GR P + G+ D FLI Sbjct: 61 ------VKYFNPETG---QSWSGVGREPVWLR-----GQDRDRFLI 92 >UniRef50_B2TE45 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2TE45_BURPP Length = 283 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA- 81 + LE++ K ++ + + + Q + +LM G+ ++ + A Sbjct: 1 MPTLEQIQAKL------KKLQAQADVLLARKAQVAVDQIRDLMLKHGLTTADIEAKAKAR 54 Query: 82 --------AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 AKY+ TWTG GR P IA K FL Sbjct: 55 RAARGLNGGGKAKAVSSGKAVAKYRDHKTGA---TWTGHGRAPGWIASV----KDRTQFL 107 Query: 134 I 134 I Sbjct: 108 I 108 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A G+ + +P KY TW+G+G P +A K FLI Sbjct: 120 AAVTHAKGSKGQPKGAQPPKYINPKTGA---TWSGRGPAPAWLASV----KDRSKFLI 170 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 26/133 (19%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + S+ L+++ ++E +R L ++ I ++ G++ +E+L Sbjct: 3 DLKNLSLPELKKLS---------VAVQKELDRRTLQSKKALIKQVQQMAAEHGLDADEML 53 Query: 77 G-------------NSSAAAPRAGKKRQPRPAKYK----FTDVNGETKTWTGQGRTPKPI 119 + + A KK+ P K K + + + W+G+GR P + Sbjct: 54 AEVGSSGREGSSVKSGAGKAAPGRKKKAPAVKKEKLPPVYWNPVNAQEGWSGRGRKPSWV 113 Query: 120 AQALAEGKSLDDF 132 L G L+ Sbjct: 114 ITFLENGGDLESL 126 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 65.8 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 12/108 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA------- 86 + + + + ++E ++ E ++ G+ +L + ++ Sbjct: 7 DLKAQIEELTAKAEAARVSEVAAVVADIKEKIEEYGLTASDLGFKTDKGTRKSVGQAIAE 66 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +++ KYK + + W+G+GR P L K+LDD+ + Sbjct: 67 ANEKKSVEPKYKGPN----GELWSGRGRAPVWTQN-LPTDKTLDDYKV 109 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 65.0 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 18/114 (15%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 L + + E + E++ ++ + E + I +E+L Sbjct: 1 MDAPTLPALRAELDA------LNIELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALG 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P+ + A++ ++W+G+G PK + GK+LDD+ I Sbjct: 55 YLQPKRRRA----AAQFYDPSSG---RSWSGRGPRPKWLV-----GKNLDDYRI 96 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 65.0 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + + ++ ++ +E + + + ++ +E+ K + +++ R Sbjct: 6 KQYSRSELLELTKQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVYE---RRNS 62 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +K Y+ + N ++TWTG+GR P + + L EG + DD L Sbjct: 63 RKLAKVGLIYR--NPNNPSQTWTGKGRRPLWVLELLREGMTFDDML 106 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 65.0 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 18/127 (14%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 + + +++ L + E+ + + ++R+ + L +A+G+ Sbjct: 1 MEIDLKSYTLPQLRALREQ---------TARAIDRLQRSQRETLLRRLSALARAEGLTLA 51 Query: 74 E-------LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 E + G RQP P KY+ W+G+GR P +A LA G Sbjct: 52 ELAEDAAAMKGAERPRKHPRTTPRQPLPVKYRHPS--NRALAWSGRGRQPHWVAAWLANG 109 Query: 127 KSLDDFL 133 S+D Sbjct: 110 GSMDALA 116 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 64.7 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 22/129 (17%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S+ L + R E E ++R + R++ + ++ +G++ +L+ Sbjct: 2 ELGTLSLTELRRLQS---------RVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLI 52 Query: 77 GNSSAAAPRAG-----------KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 G++ A KK++ KY+ + G W+G+GR P+ +A+ Sbjct: 53 GSAPVPATEKKPAAKRGRAAAGKKKEAPTVKYRHPETPGVG--WSGRGRKPQWALDWIAQ 110 Query: 126 GKSLDDFLI 134 GKS+++ + Sbjct: 111 GKSIEELAV 119 >UniRef50_B1KCF0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF0_BURCC Length = 111 Score = 64.7 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 17/110 (15%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQE----KISTWLELMKADGINPEELLGNSSAAAP 84 M +++ + + +E ++ E + I ++ ++ + + A Sbjct: 5 MSRYQKLLEQYEQLTQEIERERAVETERLVNLVIERVRQVFAEFHLDID-----VAPRAV 59 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +KR+ KY + +TW G+GRTP + GK + + + Sbjct: 60 QEPQKRKKLTPKYWNPETG---QTWCGRGRTPLWM-----AGKDRERYRV 101 >UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SG34_PELPB Length = 101 Score = 64.3 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +++ Q+ ER+ + M A I EEL Sbjct: 1 MSTLTEIQAQIADLQKQAQEIINIERKAILEDIKAKMAAYNITMEEL---ERKGKAVKSA 57 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P P KYK ++ + W G+G P+ + + G++++ + + Sbjct: 58 PRSPSPIKYKKSET----EYWVGRGPKPQWVKGIESNGENIEIYRV 99 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 64.3 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 12/105 (11%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 + + R + + + E+Q ++ + E ++ GI+ +E+L R K Sbjct: 3 QALQELEAQLRDLNIKLSEAKQKEKQAALAAFKEQVELLGISQQEVLSALGYIVQRKRKA 62 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY ++W+G+G PK + EGK L+ + Sbjct: 63 ----PAKYYDPSTG---RSWSGRGPRPKWL-----EGKDLETLAV 95 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 63.9 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 14/106 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M ++ + E + + I LM GI+P EL G A A R K Sbjct: 1 MDHDPQLTERWLEIHAEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAPAHRKPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A+Y + +TW+G+GR PK + G+ L LI Sbjct: 61 ------ARYWNPETG---QTWSGRGRMPKWLV-----GRELASHLI 92 >UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A50FD Length = 99 Score = 62.7 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 17/107 (15%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 +E E + + + E + + + ++ + ++A GI ++ + + Sbjct: 1 MESWKEYLDL---KAKLEHQLELERCRLFESVVAEIVACVEAFGITERDIFKSERIDTRK 57 Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 K AKY TW+G GR P+ I GK F Sbjct: 58 RRK------AKYFDPTTG---CTWSGVGREPQWIK-----GKDRSAF 90 >UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriavidus RepID=Q46U69_RALEJ Length = 108 Score = 62.7 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 27/106 (25%) Query: 52 AERQEKISTWLELMKADGINPEELLGNSSAAAPRA-------------------GKKRQP 92 + + I+ E M + ++L+ + P Sbjct: 6 SAKLAAIAWIREQMDNYALTLDDLIAAGCFDGEPSHGDVEAGEMPGAPDVPAVMAATAAP 65 Query: 93 RPAK----YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +P K Y+ N ++W G G P + +A+ G+S+D + + Sbjct: 66 QPPKKGPIYR----NALGQSWDGTGEYPDWLQRAVNAGQSIDFYRV 107 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 62.3 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 21/118 (17%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + +I L++ L ++ ++ E++ K+ E +K I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIV---------EEARQKEKKIKLEEIAEQVKLFDITEIELL 53 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + RQ AKY D ++W+G+G PK + GK+LDD+LI Sbjct: 54 RAAGF----VKANRQKASAKYYDPDTG---RSWSGKGARPKWLT-----GKNLDDYLI 99 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 61.6 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 57 KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTP 116 K WL GI+ E + R+ RPAKY+ TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYRDPR--NAENTWSGTGRRP 83 Query: 117 KPIAQALAEGKSLDDFLI 134 + + L G SLDD I Sbjct: 84 TWLKELLDSGLSLDDLKI 101 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +KR Y+ D TWTG G+ P + L G SL+ Sbjct: 6 KSEKRPKGEPVYRDPD--NPFNTWTGIGKRPAWLTAKLDAGISLEAM 50 >UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodobacteraceae RepID=A9EH02_9RHOB Length = 118 Score = 61.6 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + S LE++L + + ++++ ++ A + G + + Sbjct: 4 KNELKALSRKELEKLLADVKKALSSVQARDQREAKKAATKAA---------AEFGFSLND 54 Query: 75 LLGNSS--AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + ++ + K + +K F + +TWTG+GR P + +A G + Sbjct: 55 ITETAALVPKKRKTKAKAAKKQSKPVFFNPEDTNQTWTGKGRQPNWYREQIATGMDPEAM 114 Query: 133 LI 134 I Sbjct: 115 RI 116 >UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYC0_EIKCO Length = 97 Score = 61.6 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 12/101 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 +++ +++ E+ Q+R +ER++K++ L +M+ I+ ++ R Sbjct: 9 QLLEQKKSLEDRIQRRLASERKKKVNQILAIMRDFEISVADIEAGLKEKQSR-------- 60 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW G G+ PK I +A +G + FL+ Sbjct: 61 -PQYRNPKTGA---TWGGVGKRPKWIVEAQEKGIDIKKFLV 97 >UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7B2_9BURK Length = 103 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 17/105 (16%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + R + ++ EE+ + R E + + ++ + EEL Sbjct: 1 MDKFARYIQRKSELEEQIAKYRALVRDEILIEIMLAIEEFHFDAEELFPAG--------- 51 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K++ +Y W+G+GR P+ + GK+ DF Sbjct: 52 KKRKVKPRYFDPQSGA---VWSGRGREPRWLK-----GKNRRDFE 88 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + Q LN + + + R + D + ++ + V ++ +E+ ++R+ AERQ KI Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L++ +GI ++L + + P Y NG+ + G GR K + Sbjct: 71 ILLRNEGIGLDDL-----EKHMVSRRSPTVEPKTYLI---NGKKIIYKGSGRMNKVLKAI 122 Query: 123 LA-EGKS-LDDFLI 134 + EG L+ +L+ Sbjct: 123 VDKEGHDALEKYLV 136 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 46 QQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGE 105 + +E I+ +++ + K RP K F + + Sbjct: 23 IDKERKKRAREIIAEAQRQASRF---AQDIAPTV------SRKTASKRPPK--FANPDNP 71 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +TW+G GR P + +G + + LI Sbjct: 72 EQTWSGMGRQPDWYKAYIDKGGNEKNMLI 100 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 R + +F + TW+G+GR P + + L EG SL D Sbjct: 224 HEQQEEERAGREAATARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDEGGSLADL 280 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 12/103 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKAD---------GINPEELLGNS 79 K +++ + ++ EE+++ +E +T + L++ L + Sbjct: 71 AQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRNDIAAYLGTTT 130 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 +A R KY+ +TW+G+GRTPK A Sbjct: 131 TARKDVVKTGRSEVRPKYELPGTG---ETWSGRGRTPKAFAAW 170 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 58.1 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM EK VV +ERRE+ E++ E AER+ K Sbjct: 11 GIISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQEL 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 L+L+ +G +PEELLG S A K R+ K + Sbjct: 71 LQLIAGEGFSPEELLGLSEE----APKSRKKTLPKPR 103 >UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2P0K4_XANOM Length = 130 Score = 58.1 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 9/95 (9%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP- 92 +++ + R+ E+E+ Q + A+ E +E++ G + A+ GK + P Sbjct: 16 QLLEELRKLEQEEAQLKYAQTLEAFDQVIEVLTQFGNRFNAKQKSQIASLAMTGKTKGPL 75 Query: 93 -----RPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 AKY +TW+G+GRTPK Sbjct: 76 SSTGDVVAKYWIPHSG---ETWSGRGRTPKAFKAW 107 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 +R ++ M GI ++L + R A+Y+ + +TW+ Sbjct: 3 ERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQK------TARYR----SATGETWS 52 Query: 111 GQGRTPKPIAQALAEGKSLDDFLI 134 G G P+ + QA++ G+S+D F + Sbjct: 53 GDGEMPQWLKQAISAGQSMDHFAV 76 >UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXE8_LEPCP Length = 98 Score = 54.6 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E++ I LM I+P EL G A A Y+ TW Sbjct: 7 EPEKEAAIRKIRRLMAFWSISPTELRGRGVPAPRPAPAAAAVAR--YRHPVSGS---TWD 61 Query: 111 GQGRTPKPIAQA-LAEGKSLDDFLI 134 G+G P+ + +A L EG ++D + Sbjct: 62 GEGPQPQWLREALLYEGYTVDQLRV 86 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L +L ++R LRA R S++ LE L + V +E ER+ +++ Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEH---------RTREREAALAS 51 Query: 61 WLELMKADGINPEELLGNSSAAAPRAG 87 +E ++ G++ +E+L A R+ Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRSA 78 >UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkholderia RepID=B2T9F5_BURPP Length = 87 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQ 112 R+ ++ M GI E L A A Y+ N TW G Sbjct: 16 ARERLVAWIRRRMDEYGITIEALAEAIEADAAATR------AVMYRDAYGN----TWDGH 65 Query: 113 GRTPKPIAQALAEGKSLDDFL 133 G P +A+A+ G+++D F Sbjct: 66 GDKPDWLARAIYAGQNIDHFR 86 >UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RPM6_XANCB Length = 165 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 18/122 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++ L + + + + +R E++ + L +L+G++ Sbjct: 1 MALTTLNSIDAEIKQLEARKRLIEKRDADVPKALEVLQKYAQVLTAVQRRQVAKLIGDAV 60 Query: 81 A------------AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA--EG 126 A G+K P KY+ +TW G+GR P A EG Sbjct: 61 PAAVQVARKGGGLQAGPKGRKLGPVAPKYRIPS----GETWAGRGRMPIAFTAWFASVEG 116 Query: 127 KS 128 K Sbjct: 117 KD 118 >UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EME8_BURCJ Length = 108 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 14/107 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADG--INPEEL--------LGN 78 M + ++ ++ + + R E + T L G E + LG Sbjct: 1 MSKLAELLKQQEELAARIEAAQAEARTEGLQTVATLADQLGEPFAVEVVKMLGERFNLGE 60 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + + GK PAKY+ D + W+G+GR P +A AE Sbjct: 61 FFRTSRKRGKMVARLPAKYRHPD----GRVWSGKGRAPGWLAGHEAE 103 >UniRef50_C5S5I1 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S5I1_CHRVI Length = 127 Score = 52.7 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 S++ ++ LE+ K+ + E+ + + + + ++ +G +PEE++ Sbjct: 4 SNLSLEEIQRQLEEADN--KKAQLEKLLKDKREEGKGAVVEQIRNIILDNGYDPEEIMNL 61 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + RQ R ++ D + ++ +G P + + +A+ Sbjct: 62 VLRRRRKLVSDRQYR----RYVDPDNPENVYS-RGVLPGWMKEKMAQ 103 >UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJ24_9BURK Length = 82 Score = 51.9 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 12/70 (17%) Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 M+ GI E L + P Y+ W G G P + A Sbjct: 1 MEEFGITLEALAESIQHDVD--------HPPLYRD----ARGNEWNGLGSMPDWLRAARN 48 Query: 125 EGKSLDDFLI 134 G S + F I Sbjct: 49 AGVSPEFFRI 58 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 + +RA + S+ LE+ + + ++++ +Q L+L+K G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 E+L S+ KR AKY+ +V+GE WTG+GR PK Sbjct: 51 LEDLQDTSAD-------KRTKVKAKYRI-EVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 42/67 (62%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKA 67 + ELM+ Sbjct: 61 YKELMEK 67 >UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodobacter sphaeroides RepID=A4WW11_RHOS5 Length = 110 Score = 48.1 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ + A R + + + + + +W G+GR P A+A+G++ ++ Sbjct: 49 QIARTAKEEAARIKGEAGESGKRVSYFNPTNRSVSWNGRGRCPHWFKVAMAQGRTPEELA 108 >UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS8_9BURK Length = 106 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 20/109 (18%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG------ 87 + + + +EE + + + ++ EL+ GI+ E+ A Sbjct: 5 SAINQMKAKEEALAKEKDQLKGAALNQIRELVALFGISSAEIFTTPKKPAAAKSTVDYSA 64 Query: 88 ----KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 K YKF +G+ P + +A+ EGK+ D Sbjct: 65 FEVGKTYSDGVKTYKFAS----------KGKRPDWLKKAIEEGKTAKDL 103 >UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S9M9_PROA2 Length = 87 Score = 46.5 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E+ + I+ M ++ ++ G A A ++P+ +Y W Sbjct: 4 QREKVKVIAGIRSKMAEFDLSESDIFG----GAKPASGSKKPKMIRYYDPKRG---IKWA 56 Query: 111 GQGRTPKPIAQALAEGKSLDDFL 133 G+GR P + E LD F Sbjct: 57 GRGRKPPEFEELSQE--ELDRFR 77 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREF-SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIS 59 M + ++L N R+L AR + + + ++E+ + +R++EEE++Q++ R EK++ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 TWLELMKADGINPEELLGNSSAAAPRA 86 +++ ++ +G++ +L + S Sbjct: 61 QFIQQLETEGLSITDLQFHISNRNRAR 87 >UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T2T5_9RHOB Length = 95 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 18/99 (18%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 S+ L++M + + E ++ E S L + G + EL+ Sbjct: 5 DLEALSLGELKKMR---------KDVAKAISTYEDRQKAEARSKVEALAQDLGYSLAELV 55 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 G R P KY+ + W +GR Sbjct: 56 GTE------TKTARAPAQPKYRHP---NLSLAWCSRGRQ 85 >UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXI1_RALEH Length = 89 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 107 KTWTGQGRTPKPIAQALAEGKSLDDFL 133 +W GQG P + +A+ G+S++ FL Sbjct: 1 MSWDGQGEMPDWLRRAVNAGQSVEFFL 27 >UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JWB5_BURP8 Length = 84 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 11/80 (13%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 +R ++ M GI +L + + A+Y+ + TW+ Sbjct: 3 ERKRDSMVANLRRRMAEVGIELNDLAAAIAEDEIK-------EAARYR----SATGDTWS 51 Query: 111 GQGRTPKPIAQALAEGKSLD 130 G G P+ + QA++ + Sbjct: 52 GDGEMPQWLKQAISACATRS 71 >UniRef50_B2IA25 Histone family protein nucleoid-structuring protein H-NS n=14 Tax=Xylella fastidiosa RepID=B2IA25_XYLF2 Length = 138 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + R+ KY +TWTG+GR P A Sbjct: 73 ERPKTRKALSADARRVVVPKYCLPHSG---ETWTGRGRLPSSFAAW 115 >UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnificus RepID=Q8DF50_VIBVU Length = 167 Score = 40.0 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 17/139 (12%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + LQ+L L D ++ + + ++ E+Q+ + ++ I + Sbjct: 7 NEQLQALLQSPDLAEKLASLGGDAVQAFTKAATEAVQVQK--EKQEAERKQKIEDLIDSI 64 Query: 62 LELMKADGINPEELLGNSSAA--------------APRAGKKRQPRPAKYKFTDVNGETK 107 ++ + I+ EE +A + +K P +Y+ ++ E Sbjct: 65 ERDLEEESISKEEFALAIAARFKVSVAARTRSTKTSNNKERKNAPTRPQYRIV-LDDEEH 123 Query: 108 TWTGQGRTPKPIAQALAEG 126 W+G+GR+P+ A G Sbjct: 124 VWSGKGRSPEVFRAAKESG 142 >UniRef50_B8KYY1 Virulence regulator n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KYY1_9GAMM Length = 128 Score = 39.2 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 11/109 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI-----NPEEL 75 +++ + + +K E+ + AE + E ++ G +L Sbjct: 3 LTLEQIRK--KKAEAEALLAEMEKAEGDALAAEAGASFAGVYETLQQFGQHYTTKQKNDL 60 Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 + R K++ D TW G GR PK Sbjct: 61 KALLEPRKAVSASAGISRAPKFQIPD----GTTWAGTGRQPKAFLAWAE 105 >UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n=9 Tax=Gammaproteobacteria RepID=A4STY6_AERS4 Length = 154 Score = 38.1 bits (87), Expect = 0.091, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 ++ L + + R + E++E+ V E +++ + R+ + + Sbjct: 34 VISELKRKHRVLILMRGIPLHEFREIIERLEAVYSELESDQKNRDELDKIRRAEAEKIII 93 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 M A G++ + L + K + W+GQGR P Sbjct: 94 DMNARGVDIQYLNEVIVGKSESDNAKYIK------------DGVPWSGQGRRPDVFKGLS 141 Query: 124 AEGKSLDDFLI 134 A L+ + + Sbjct: 142 AV--ELERYRV 150 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.138 0.394 Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 559,662,156 Number of Sequences: 3077464 Number of extensions: 15265891 Number of successful extensions: 114893 Number of sequences better than 1.0e-01: 221 Number of HSP's better than 0.1 without gapping: 470 Number of HSP's successfully gapped in prelim test: 219 Number of HSP's that attempted gapping in prelim test: 113652 Number of HSP's gapped (non-prelim): 818 length of query: 134 length of database: 1,040,396,356 effective HSP length: 99 effective length of query: 35 effective length of database: 735,727,420 effective search space: 25750459700 effective search space used: 25750459700 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 87 (38.1 bits)