BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (134 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 204 6e-52 UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 129 3e-29 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 129 4e-29 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 121 6e-27 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 119 4e-26 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 117 1e-25 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 115 3e-25 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 114 1e-24 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 112 4e-24 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 110 2e-23 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 105 4e-22 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 101 7e-21 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 98 8e-20 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 90 2e-17 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 84 9e-16 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 84 1e-15 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 82 6e-15 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 82 7e-15 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 79 4e-14 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 71 1e-11 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 70 1e-11 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 65 6e-10 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 63 3e-09 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 59 7e-08 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 58 8e-08 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 58 1e-07 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 57 1e-07 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 55 5e-07 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 55 6e-07 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 55 9e-07 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 53 2e-06 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 53 3e-06 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 51 1e-05 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 50 1e-05 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 50 2e-05 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 49 5e-05 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 47 3e-04 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 46 5e-04 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 45 6e-04 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 45 0.001 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 45 0.001 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 43 0.003 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 42 0.004 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 42 0.007 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 42 0.008 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 42 0.008 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 41 0.009 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 41 0.014 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 40 0.016 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 40 0.022 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 40 0.025 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 40 0.025 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 40 0.027 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 39 0.054 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 39 0.057 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 39 0.059 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 39 0.059 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 39 0.075 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 38 0.082 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 38 0.088 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 38 0.091 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 38 0.094 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 204 bits (519), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 113/134 (84%), Positives = 122/134 (91%), Gaps = 1/134 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M++MLQ+LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE QQR+LAE+QEKI+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +LELMKADGINPEEL S A PR+ KKRQPRPAKY+FTD NGE KTWTGQGRTPKPIA Sbjct: 61 FLELMKADGINPEELFAMDS-AMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 QALAEGKSLDDFLI 134 QALA GKSLDDFLI Sbjct: 120 QALAAGKSLDDFLI 133 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 65/134 (48%), Positives = 92/134 (68%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++L N+R+LRA++RE +++ LEE LEK + V ER+E E +++ +LAE+Q K+ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ++M GI PE+LL SA + +KR PRPAKYKF D GE KTWTGQGRTP + Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 QALAEGKSLDDFLI 134 L GK L++FLI Sbjct: 160 AQLDAGKKLEEFLI 173 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 1/135 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE E+ ER K+ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + E++ ADGI+P ELL + +A KR RPAKY + D NGETKTWTGQGRTP I Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 QALAE-GKSLDDFLI 134 +A+ E GKSLDDFLI Sbjct: 121 KAMDEQGKSLDDFLI 135 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 64/136 (47%), Positives = 90/136 (66%), Gaps = 4/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEEL--LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 + ELM+ +GI PEEL + + + RA KR PRPAKY F D NGE KTWTGQGRTP+P Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRA--KRAPRPAKYAFIDENGEHKTWTGQGRTPRP 118 Query: 119 IAQALAEGKSLDDFLI 134 I AL +GKSL DF I Sbjct: 119 IQNALNKGKSLSDFEI 134 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/134 (46%), Positives = 89/134 (66%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++++LNN+R LR+MA+E SI+ LE ++EKF++V +E++ EE + +R ER+ ++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + EL+K DGI +EL + A KR P AKYK+ + NGE KTWTGQGR PK I Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 QALAEGKSLDDFLI 134 L GKSL DF I Sbjct: 121 LQLNAGKSLSDFAI 134 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 85/131 (64%), Gaps = 4/131 (3%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 Q LN IR +RA ARE +++EE+ EK + + R+E + + + +ER EK+ + E+ Sbjct: 9 FQGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREM 68 Query: 65 MKADGINPEELLGNSSAAAPRAGK-KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 + DGI+P +L + + PR K R PRPAKY++TD +G KTWTGQGRTP +A AL Sbjct: 69 LLQDGIDPADL---ADSELPRKQKASRAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANAL 125 Query: 124 AEGKSLDDFLI 134 A GK ++DFLI Sbjct: 126 AAGKKIEDFLI 136 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 87/134 (64%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +L++L +IR LR +EF++ LE +LEKF+++T ERR+ E+ QR+ ER E+I+ Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + L+ DG+ +L+ + + R KK PR AKY++TD NG+ KTWTGQGR P + Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 QALAEGKSLDDFLI 134 L GK+L DF I Sbjct: 121 AELNTGKTLADFEI 134 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/127 (48%), Positives = 90/127 (70%), Gaps = 2/127 (1%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKA 67 L+NIR+ RA ARE + ++L+EM EK V +ERR + E++ E A R+EK L+L++ Sbjct: 14 LSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEILQLIEG 73 Query: 68 DGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 +G EELLG+ + + KK + PAKY+F + NGETKTWTG+GR PKPIA+AL+ G+ Sbjct: 74 EGFTAEELLGDDVNISKKRSKKPKA-PAKYEFVE-NGETKTWTGKGRKPKPIAEALSAGR 131 Query: 128 SLDDFLI 134 +L++FLI Sbjct: 132 TLEEFLI 138 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 1/127 (0%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKA 67 L+NIR+LRA ARE ++L++M +KF V +E RE+ E++ +E +R + LE++ + Sbjct: 11 LSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELLEMIAS 70 Query: 68 DGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 +G + EEL G S + R + Q PAKY+F +VNGE + WTG+GR PK I +A+A GK Sbjct: 71 EGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEAIAAGK 129 Query: 128 SLDDFLI 134 LDDFLI Sbjct: 130 KLDDFLI 136 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ L+ L NIR+LRA R+ + L+E+ EKF V +E+ + E Q E Q+K++ Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 WLELMKADGINPEELL---GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + EL+ +G++PE+LL G ++ A A KR PRPAKY++ V GE +TWTGQGR P Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 PIAQALAEGKSLDDFLI 134 IA A+A G+SLD FLI Sbjct: 120 QIAAAIASGESLDAFLI 136 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++ N R+LRA +E S++ LEE+L KF + +R+E + + +Q K++ Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 WLELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L +K +GI+PEEL+G +S+A + KR PRPAKY + D NGETKTWTGQGR P P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IAQALAEGKSLDDFLI 134 + + + E S++++LI Sbjct: 120 LQEVMNEKGSIEEYLI 135 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 86/130 (66%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+SL NIR+LRA+A++ +++ L+ + EK ++ E+ EE +Q++ E ++ E ++ + E+ Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +K DG++ +EL + + K PRPAKYKF D NG KTWTGQGRTPK + AL Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EGKSLDDFLI 134 GK L+DF I Sbjct: 124 SGKKLEDFAI 133 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 3/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+A +E ++ LE + KF V +RREEE ++QR+ +Q+KI Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAP---RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + M GI ++L P KKR P+P KY++TD NGE +TWTGQGR PK Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 PIAQALAEGKSLDDFLI 134 + A+ GKSL+ FLI Sbjct: 121 AMKTAVDNGKSLEAFLI 137 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 3/133 (2%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+ +NN+R+LRA A+E ID L E EK V +ER +EEE+ ++E +++E + + Sbjct: 6 LKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFRNQ 65 Query: 65 MKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + GINPEE+ ++ + R+ R KY++ D NGE + WTGQGR P+PI++A Sbjct: 66 ITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPISEA 125 Query: 123 LA-EGKSLDDFLI 134 + EGK L+DFLI Sbjct: 126 IKNEGKKLEDFLI 138 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L L + R +A +E S+D L E K + ER+EEE+ + AER +I+ Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++ G++ E+ LG+ +++ A KR PRP KY+ T V+GE WTGQGR P Sbjct: 61 ILAQIENSGLSIED-LGDVTSSVKTAKTKRAPRPPKYQIT-VDGELIQWTGQGRMPTVFK 118 Query: 121 QALAEGKSLDDFLI 134 Q + GK++ +FLI Sbjct: 119 QQVDSGKNMSEFLI 132 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 2/128 (1%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKA 67 L+NIR+LRA ARE + L + +EK V ER +E +++QR + E + + M Sbjct: 14 LSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKKYMVE 73 Query: 68 DGINPEELLGNSSAAAPRAGKKRQP-RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 G++P LL SS + R+GK +P P KY+ D +G T W+G+G+ P AL G Sbjct: 74 LGLDP-ALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAALDAG 132 Query: 127 KSLDDFLI 134 ++ DD LI Sbjct: 133 RNKDDLLI 140 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L++ N+R+L A R+ SI+ LE L+K + ++R+E ++ L + K+ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + +LM+ DGI+P E S + +K P P KY++ D E KTW+G GRTP+ I Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGNVK--QKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 QALA-EGKSLDDFLI 134 A+ EGKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/127 (43%), Positives = 70/127 (55%), Gaps = 4/127 (3%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKA 67 L NIRT+R RE L E EK V +ER+ E E +Q EL +++ K L + + Sbjct: 12 LANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKELLAFIAS 71 Query: 68 DGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 +G EEL GN + R+P KY F + NGE K W+G GR PKPI AL EGK Sbjct: 72 EGFTLEELNGNGITKRKKPPVHRKP---KYTFEE-NGEMKVWSGVGRKPKPIEVALNEGK 127 Query: 128 SLDDFLI 134 +L DFLI Sbjct: 128 TLSDFLI 134 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/134 (48%), Positives = 86/134 (64%), Gaps = 7/134 (5%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 M+ L N+R+LRA ARE S+ L+E L+KF V +ERREEEE E++ K+ + + Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 LMKADGINPEEL---LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +++A+GI EEL LG++ A KKR RPAKY F+D NGE KTWTGQGRTPK + Sbjct: 61 MLEAEGITAEELVALLGDAPKAK----KKRAARPAKYTFSDENGEEKTWTGQGRTPKALQ 116 Query: 121 QALAEGKSLDDFLI 134 Q L G L +F I Sbjct: 117 QLLDNGAQLSEFEI 130 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+ +E S++ LE + +K + R+ +E +QQ E+ EK++ Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++A G++ +L + A ++ K + RP KY D G WTG GR PK Sbjct: 61 ILAQLEAAGLDVNDL--QKAEPAKKSTKVGKKRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 QALAEGKSLDDFLI 134 L GKSLD +L+ Sbjct: 119 AELDNGKSLDSYLL 132 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM +K VV +ERREE E++ E E + K Sbjct: 11 GIISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQA 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQP--RPAKYKFTDVNGETKTWTGQGRTPKPI 119 +E + + G++PE LL +A + +K + R AKY+F D NGE + W+G G+ P + Sbjct: 71 IEYIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLAL 130 Query: 120 AQALAEGKSLDDFLI 134 + L EG ++DFLI Sbjct: 131 QKLLDEGHFMEDFLI 145 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 15/131 (11%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE----QQQRELAERQEKISTWLE 63 L + R +A +E + L E+ EK + ++R+ +E Q+Q +LA+ I Sbjct: 13 LLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQ----IEQLKS 68 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 L++ G++ ++L SS R +RQP+P KY T V+GE TWTGQGR PKPI A+ Sbjct: 69 LIEEAGLSLDDL---SSTPIKR---ERQPKPPKYAIT-VDGEQVTWTGQGRMPKPIKAAI 121 Query: 124 AEGKSLDDFLI 134 G SL+ FLI Sbjct: 122 DNGASLESFLI 132 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 7/127 (5%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKA 67 L++ R ++ + +L ++ K + E ++E++Q + R EK S L L+ + Sbjct: 13 LSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELLALIVS 72 Query: 68 DGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 +G +PEEL+ + AA K R R KY++ D G K W+G GR P+ I + L G Sbjct: 73 EGFSPEELI---TVAAI---KTRSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQERLNSGA 125 Query: 128 SLDDFLI 134 +LDDFLI Sbjct: 126 TLDDFLI 132 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + +SL + LR A+ + + LE + + + +E+REE E ++ ELAE +EK + Sbjct: 12 ITSESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAI 71 Query: 63 ELMKADGINPEELLGN--SSAAAPRAGKKRQPRPAKYKFTD-VNGETKTWTGQGRTPKPI 119 + ++ G++PE + + + +K + PAKY+FT G+T TWTG GR K + Sbjct: 72 KYLEELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGL 131 Query: 120 AQALAEGKSLDDFLI 134 + G SLD+FLI Sbjct: 132 QLLIDAGHSLDEFLI 146 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ L +LR + S+ LE+++ V+T+++R EEE E+ KI + Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 WLELMKADGINPEELLG-NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M+ G++ +L+ AAP+ KK QP KY+ D G W+G+GRTP Sbjct: 61 IRQSMQDAGVDINDLMSLIGETAAPK--KKVQP---KYRIVDDEGNEHEWSGRGRTPLAF 115 Query: 120 AQALAEGKSLDDFLI 134 +G + DD LI Sbjct: 116 QAYFDKGFTKDDCLI 130 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL--LGNSSAA 82 L++ +++ + KE R++ +++++ ER + +++ EL+K G+ +L G S+A Sbjct: 6 TLQQQIQEAEAIVKELRKQLDEERK--GERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AG KR AKY+ + KTWTG+G++P +A LA G + DDFLI Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQLAAGYTKDDFLI 112 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L + R L+ +E S++ L++ EK V ++R E + ++ AE+ +I Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 WLELMKADGINPEELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M A G++ + N ++ + ++ ++ RP KY + V+G WTG GR P Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYSIS-VDGVRTDWTGIGRMPVVF 119 Query: 120 AQALAEGKSLDDFLI 134 ++AL+ GK L+DF + Sbjct: 120 SEALSSGKQLEDFSV 134 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 11/140 (7%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 +++ L+ I +LR A+ ++ LE++ + +V +E +E E ++++K Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 LELMKADGINPEEL-----LGN--SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGR 114 L++++ G+N + L + + R GK R+P KY+F + NGE K W+G G+ Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKP---KYQFNE-NGEIKYWSGNGK 126 Query: 115 TPKPIAQALAEGKSLDDFLI 134 P + + L EG SL++FLI Sbjct: 127 KPLGLQKLLNEGHSLNEFLI 146 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + L + R L+ RE LE + + E+R E +Q++ +R+EK + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L L++++G +P EL+ + A K AKY++ + NG K W+G GR P I Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRK------AKYQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 QALAEGKSLDDFLI 134 Q L GK L+ FLI Sbjct: 114 QELDAGKPLESFLI 127 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 49/75 (65%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEEL 75 + ELM+ +GI PEEL Sbjct: 61 YKELMEKEGITPEEL 75 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+D LE+++++ ++R+ E + + + E+ + K G+ P++LL +S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEK---------MAKNLGVAPQDLLKSS 57 Query: 80 S----AAAPRAGKKRQP--RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + A KK+ RPAK KF D N TWTG+G+ P + AL++G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALSKGAKLEDFA 117 Query: 134 I 134 + Sbjct: 118 V 118 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 7/130 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS++L+ N RA A+E S+ LE ++ F ++ +EEE + E A + + Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 WLELMKADGINPEE--LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L+ G+ EE LL A A + GK +P KY+ T V GET WTG+GRTPK Sbjct: 61 IANLIAKSGLTMEEVALLTTPKAGATK-GKTVEP---KYRLT-VAGETHEWTGRGRTPKV 115 Query: 119 IAQALAEGKS 128 + G S Sbjct: 116 FQEYFDAGNS 125 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 59/94 (62%), Gaps = 7/94 (7%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFT 100 RE + +Q ++L + +E+I L + + G++ EELL AA + K + + + ++ Sbjct: 23 REIKSRQHQDLQKAREQI---LAIAQEAGVSVEELL----AAGGKKSKTGKGQKVQARYQ 75 Query: 101 DVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + ++TWTG+GR PK IA+ LA+GK+LDDF I Sbjct: 76 NPSDNSQTWTGRGRQPKWIAEGLAKGKALDDFRI 109 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 1/92 (1%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 ++ +++ NIR+LR ARE + L EM EK VV +ERRE+ E++ E AER+ K L Sbjct: 12 IISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQELL 71 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 +L+ +G +PEELLG S AP++ KK P+P Sbjct: 72 QLIAGEGFSPEELLG-LSEEAPKSRKKTLPKP 102 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 ++E E F V K+ E+ +Q+ EL + I + M G+ E++ Sbjct: 30 IMEMSDEDFNQV-KDNLEKAIEQRNELKDSLAIIKKY---MDDAGVTAEDVYREFGKKLQ 85 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K KY++ + NG+ W+GQGR P IA+A+ G SLDDFLI Sbjct: 86 TGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIAEAIKAGGSLDDFLI 134 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 12/140 (8%) Query: 4 MLQSLNNIRTL-RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 ML ++ +T R A++ S+ L+ + K+ E +++ RE R + Sbjct: 1 MLSAIAKSKTAARNAAKDLSLVELKSAIANLTAAAKQ--IEVKEKTREDKRRAADLKKLQ 58 Query: 63 ELMKADGINPEE---LLGNSSAAAPR--AGK---KRQPRPAKYKFTDVNGETKTWTGQGR 114 +MK G+ E L G A R +GK KR P P KY+ T V GET WTG+GR Sbjct: 59 SMMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYEIT-VAGETHQWTGRGR 117 Query: 115 TPKPIAQALAEGKSLDDFLI 134 TP + + G LD LI Sbjct: 118 TPIVFREFMENGGDLDSCLI 137 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 9/92 (9%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 E E ++RE E+ + +EL +A G++ EE+LG + G R+P AKY Sbjct: 19 ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLG-------KVGPARKPVEAKYCHPQ- 70 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 N E TWTG+GR P + + LA GK+L+D I Sbjct: 71 NPEL-TWTGRGRKPLWVQELLAAGKNLEDLAI 101 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 63 ELMKADGINPEELLGNSSAAAPRAGK--KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 ++ KA G EL G+S + A K K+Q + + KF +++ KTWTG+GR P Sbjct: 41 KIAKAHGFTLAEL-GDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFK 99 Query: 121 QALAEGKSLDDFLI 134 QALA GK+ D+ I Sbjct: 100 QALAAGKTPDEMAI 113 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 7/71 (9%) Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 + K G + +E G S G K P+ K+ + +++TWTG+GR P + +AL Sbjct: 56 VAKKHGFSLDEFTGGKS------GSKSGPKGVA-KYANPADKSQTWTGRGRQPNWVKEAL 108 Query: 124 AEGKSLDDFLI 134 + GKSLD+F I Sbjct: 109 SSGKSLDEFAI 119 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 20/128 (15%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQ--EKISTWL-ELMKADGINPEELLG 77 SID+ ++ + K ++QQ +A+R K+ T L KA G + EEL G Sbjct: 1 MSIDLTGLSAKQLGALIKN----AKKQQTVVAKRAPIAKVRTQLTRAAKAQGYSIEELFG 56 Query: 78 NSSAAAP-----------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 +++A P RAG+K KY+ N + +TWTG+G+ P+ +A+ A G Sbjct: 57 AAASAGPGRPAAAGKPGPRAGRKLGKVAPKYR-NPANAQ-ETWTGRGKQPRWLAELTAAG 114 Query: 127 KSLDDFLI 134 K ++DFLI Sbjct: 115 KKVEDFLI 122 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 76/142 (53%), Gaps = 19/142 (13%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L R +A+ + +I+ L+ +L ++T+ + E+E + Q++ AE +++ Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRIL---NIITEIKIEKEHEAQKQ-AEHEQQERQ 56 Query: 61 WLELMKAD----GINPEELLGNSSAAAPRAGKKRQPRPAK-----YKFTDVNGETKTWTG 111 LE M+ + G++ ++L+ S R KKR+ K Y++ G+ KTW G Sbjct: 57 ALEEMREEILNKGLDFDKLV--SLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNG 110 Query: 112 QGRTPKPIAQALAEGKSLDDFL 133 +G P+ + + L EG L DFL Sbjct: 111 EGNVPEEMQKMLDEGLELADFL 132 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Query: 85 RAGKK-RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +AG+K + R KY+ TD + +TWTG+GR P + +ALA G+ L+DF I Sbjct: 73 QAGEKLEKKRSIKYRNTD--NDEETWTGRGRKPTWLVEALAAGRRLEDFAI 121 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 87 GKKRQPRP-AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 GK R+P A K+ + + ++TWTG+GR P + AL GKS+DD I Sbjct: 59 GKGRKPSTKATAKYANPDDPSQTWTGRGRKPAWVNAALEAGKSIDDLAI 107 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 13/98 (13%) Query: 50 ELAERQEKISTWL------ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY------ 97 EL E E+IS L E K DG LG +S A ++ + P+PA+ Sbjct: 30 ELWEIHERISQVLCSKIQSEQRKLDGHLSRLRLGVTSGANQQSDDESGPKPARRPYPKVY 89 Query: 98 -KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K+ + + TW G+G+ P + L GKS+DDFLI Sbjct: 90 PKYRSLKDPSLTWAGRGKQPLWLIDELKSGKSIDDFLI 127 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +AA AGK R P KY+ NGET W+G+G+ P + +A G+ +DFL+ Sbjct: 52 TPSAAQMAGKTRTPVAVKYR--GPNGET--WSGRGKAPNWLTSLVAHGRDKNDFLV 103 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 25/37 (67%) Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K+ + ++TWTG+GR PK + ALA GKSL+D I Sbjct: 66 KYANPANPSETWTGRGRKPKWVEAALASGKSLEDLTI 102 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 16/141 (11%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +L+SL++ R + M + S+D + ++ + R E+E + + AE +E+ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTL----QNLRNEKELEAKMAAEIEERERQ 203 Query: 61 WLELMKA-------DGINPEELLGNSSAAAPRAGKKRQPRP-AKYKFTDVNGETKTWTGQ 112 LE ++A D L+G + + K+ P+P A Y + G+ + W G Sbjct: 204 ELEALRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAY----GDNEVWDGV 259 Query: 113 GRTPKPIAQALAEGKSLDDFL 133 G P + L EG L DF+ Sbjct: 260 GEVPAALQSLLDEGFELSDFV 280 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK---- 96 R ++E +R+ A + + +L + G++ +E++ + A PR + + PAK Sbjct: 17 RIDKEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMASPVFATPRKARSKTAAPAKAPLP 76 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KF N W+G+GR P + LA G SLD + Sbjct: 77 VKFRHPNNRELAWSGRGRKPHWVEAWLANGGSLDALAV 114 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 17 MAREFSIDVLEEMLEKFR--VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 MA+ + LE++++ R ++ EE + E E+Q EL+++ G N + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLGNSSAAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 L G+ + GK+ R+P KY+ + ++TW+G+GR PK + L Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPE--NPSETWSGRGRKPKWVEAHLE 118 Query: 125 EGKSLDDFLI 134 G +++D LI Sbjct: 119 AGGNMEDLLI 128 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKAD-GINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 R+E +EQ R+ E +E++ ++ M A G EL+ S A K + P KY+ Sbjct: 16 RKEIDEQIARKKVEEREEVLAEMKAMAAKRGFEFSELVSGKSKA-----KAKDKLPPKYR 70 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++TW+G+GR P I A+ +G ++DF I Sbjct: 71 --NPKDASQTWSGRGRKPNWIQDAVKKGAKIEDFAI 104 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%) Query: 47 QQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGET 106 + RE E +++++ +L + G + EL G + P GK + AKY N E Sbjct: 35 RDRERMEIKKRVA---DLAETHGFSVAELFGGARGRGP--GKTKSVGVAKY----ANPEN 85 Query: 107 K--TWTGQGRTPKPIAQALAEGKSLDDFLI 134 K TWTG+GR P + + L +G L DF I Sbjct: 86 KLDTWTGRGRKPNWVVERLRKGAKLADFEI 115 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 41/65 (63%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELM 65 + ELM Sbjct: 61 YKELM 65 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 80 SAAAPRAGKKRQPRP-AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S A A ++R+ P K+ + N +TW+G+G+ P+ +A L G+S+D+F+I Sbjct: 62 SGAETDAARERRKYPRVVAKYQNPNEPMETWSGRGKVPRWLAAELKSGRSIDEFVI 117 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 18/89 (20%) Query: 52 AERQEKISTWLELMKAD----GINPEELLGNSSAAAPRAGKKRQPR-PAKYKFTD-VNGE 105 A R+E+ S + ++A GI P E+ G S+ +R PR PA K+ D ++G Sbjct: 19 AMRREEASAVIAKLRAAILEFGITPAEVFGASAKQI-----RRSPRSPATQKYRDPLSG- 72 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G++ DDFLI Sbjct: 73 -ATWSGRGRAPRWIV-----GRNRDDFLI 95 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 +AE + I+T E + GI PE+L G AP +G R P KY+ TW+ Sbjct: 53 IAELESIIATIREQIAEYGITPEQLFGRRR--APASG-TRAPVAPKYRDPKTGA---TWS 106 Query: 111 GQGRTPKPIAQALAEGKSLDDFLI 134 G+G+ P IA A K+ D FLI Sbjct: 107 GRGKAPHWIANA----KNRDRFLI 126 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 53 ERQEKISTWLEL---MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 E QEK++ EL K G EELLG + G K K K+ W Sbjct: 26 EAQEKVNVLNELRAFAKTRGYAIEELLGKEAKVKAATGNK-----VKVKYRHPQNPELEW 80 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 TG+GR PK + +A G +L+ L+ Sbjct: 81 TGRGRKPKWVEAWVANGATLESLLV 105 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY + +TWTG+G+ P +A ALA G+SL+ F + Sbjct: 69 PAKY--INPANPAQTWTGRGKRPHWLADALARGESLEKFAV 107 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%) Query: 48 QRELAERQEKISTWLELMK---ADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 ++EL +R K+ E+ K + G+ EEL + P+ KR+ PA +F Sbjct: 22 EKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKG--KRELGPAPVRFRHPQD 79 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + TW+G+G+ P + +A+A+G + D + Sbjct: 80 ASLTWSGRGKRPNWMKEAMAKGMTEDQMRV 109 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 11/107 (10%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 +++E+ V+ +E + EQ+ + + E +K +T+ + + LG ++ Sbjct: 21 QLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTYYNITLQE-------LGYTNVPDDGLA 73 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ + Y+ N E +TW+G GR P+ + +AL G +DFL+ Sbjct: 74 RRNSSKRVYYR----NEEGQTWSGVGRQPRWLKEALLNGMKKEDFLV 116 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KR KY+ + N E TW+G+GR P IA AL GKSL+DF I Sbjct: 61 QKRAAVAPKYRHPE-NPEI-TWSGRGRKPAWIAGALEAGKSLEDFAI 105 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 24/37 (64%) Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K+ + ++TW+G+G+TP A AL G+ +DDF I Sbjct: 77 KYRNPLSPSQTWSGRGKTPHWFANALKMGRKIDDFRI 113 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 10/108 (9%) Query: 33 FRVVTKERREEEEQQQREL----AERQEKISTWLELMKAD-GIN-PEELLGNSSAAAPRA 86 R + K ++E E +QRE+ A +E I + +L +D G P+ G + + P Sbjct: 10 MRQIAKLQQEAEAIRQREIQGVVARIREAIEHY-QLTASDLGFGGPKRGRGAARSKVPVK 68 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 GK + P + +F D NG + WTG GR PK A+A G + + + Sbjct: 69 GKAK-PAVGRVRFRDANGNS--WTGHGRRPKWFVDAIAAGATPESLSV 113 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 19/107 (17%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG------NSSAAAPRA-----G 87 ++R E Q +R R+ I++ ++ M+ I PEE++ ++ AAAPR G Sbjct: 21 QKRAEALQTRR----RKPVIASIVKSMREYNITPEEIIAALGSAKSTRAAAPRRKATSDG 76 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KR P KY GET W+G+G+ P+ + G S D FLI Sbjct: 77 SKRAVAP-KY-LHPQTGET--WSGRGKAPRWLVAEEGNGASRDSFLI 119 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 156 2e-37 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 147 1e-34 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 136 2e-31 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 134 9e-31 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 134 1e-30 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 131 6e-30 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 131 6e-30 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 130 9e-30 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 129 3e-29 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 127 8e-29 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 127 9e-29 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 126 2e-28 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 125 6e-28 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 122 3e-27 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 122 4e-27 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 121 7e-27 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 118 5e-26 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 115 3e-25 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 114 8e-25 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 114 1e-24 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 114 1e-24 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 113 2e-24 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 110 1e-23 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 107 1e-22 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 107 1e-22 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 104 8e-22 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 103 2e-21 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 99 3e-20 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 89 4e-17 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 89 5e-17 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 82 6e-15 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 79 3e-14 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 78 8e-14 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 77 1e-13 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 77 2e-13 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 75 6e-13 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 74 1e-12 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 73 2e-12 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 72 5e-12 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 72 7e-12 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 65 6e-10 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 62 4e-09 Sequences not found previously or not previously below threshold: UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 87 1e-16 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 70 2e-11 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 65 7e-10 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 65 8e-10 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 65 9e-10 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 64 1e-09 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 64 2e-09 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 62 5e-09 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 62 5e-09 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 62 6e-09 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 62 6e-09 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 62 6e-09 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 61 1e-08 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 60 2e-08 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 60 2e-08 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 60 2e-08 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 60 2e-08 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 60 3e-08 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 60 3e-08 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 59 4e-08 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 59 4e-08 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 59 4e-08 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 59 5e-08 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 59 6e-08 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 58 9e-08 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 58 1e-07 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 58 1e-07 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 57 1e-07 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 57 1e-07 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 57 1e-07 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 57 2e-07 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 57 2e-07 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 57 2e-07 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 57 2e-07 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 56 3e-07 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 56 3e-07 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 55 5e-07 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 55 6e-07 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 55 6e-07 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 55 7e-07 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 55 8e-07 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 55 9e-07 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 55 1e-06 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 54 1e-06 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 54 1e-06 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 54 1e-06 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 54 1e-06 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 54 2e-06 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 54 2e-06 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 54 2e-06 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 54 2e-06 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 53 3e-06 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 53 3e-06 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 53 3e-06 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 53 3e-06 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 53 3e-06 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 53 4e-06 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 52 5e-06 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 52 5e-06 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 52 5e-06 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 52 7e-06 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 52 8e-06 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 52 8e-06 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 52 8e-06 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 51 1e-05 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 51 1e-05 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 50 2e-05 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 50 2e-05 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 50 2e-05 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 50 2e-05 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 50 2e-05 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 50 2e-05 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 50 2e-05 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 50 3e-05 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 49 4e-05 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 49 4e-05 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 49 4e-05 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 49 5e-05 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 49 5e-05 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 49 5e-05 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 49 6e-05 UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS4... 48 9e-05 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 48 1e-04 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 48 1e-04 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 48 1e-04 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 47 1e-04 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 47 2e-04 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 47 2e-04 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 47 2e-04 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 47 2e-04 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 47 2e-04 UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 47 2e-04 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 47 2e-04 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 46 3e-04 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 46 3e-04 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 46 3e-04 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 46 4e-04 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 46 4e-04 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 46 4e-04 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 46 5e-04 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 45 5e-04 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 45 6e-04 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 45 6e-04 UniRef50_B1FNZ3 Histone family protein nucleoid-structuring prot... 45 8e-04 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 45 9e-04 UniRef50_B2T963 Histone family protein nucleoid-structuring prot... 45 0.001 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 44 0.001 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 44 0.002 UniRef50_B1FTJ8 Histone family protein nucleoid-structuring prot... 44 0.002 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 44 0.002 UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriav... 44 0.002 UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 44 0.002 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 43 0.003 UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenel... 43 0.003 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 43 0.004 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 43 0.004 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 42 0.004 UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia a... 42 0.004 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 42 0.005 UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n... 42 0.005 UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodo... 42 0.006 UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptoth... 42 0.007 UniRef50_B3RIJ8 Putative uncharacterized protein n=1 Tax=Trichop... 42 0.008 UniRef50_B1KCF0 Histone family protein nucleoid-structuring prot... 41 0.009 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 41 0.011 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 41 0.011 UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2... 41 0.012 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 41 0.014 UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia... 41 0.015 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 40 0.018 UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n... 40 0.019 UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkhol... 40 0.024 UniRef50_B2TE45 Histone family protein nucleoid-structuring prot... 40 0.024 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 40 0.031 UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n... 39 0.034 UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodoba... 39 0.034 UniRef50_B2WD92 Putative uncharacterized protein n=2 Tax=Pleospo... 39 0.053 UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n... 39 0.054 UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthom... 39 0.056 UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnific... 38 0.088 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 65/134 (48%), Positives = 92/134 (68%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++L N+R+LRA++RE +++ LEE LEK + V ER+E E +++ +LAE+Q K+ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ++M GI PE+LL SA + +KR PRPAKYKF D GE KTWTGQGRTP + Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 QALAEGKSLDDFLI 134 L GK L++FLI Sbjct: 160 AQLDAGKKLEEFLI 173 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 147 bits (370), Expect = 1e-34, Method: Composition-based stats. Identities = 113/134 (84%), Positives = 122/134 (91%), Gaps = 1/134 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M++MLQ+LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE QQR+LAE+QEKI+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +LELMKADGINPEEL S A PR+ KKRQPRPAKY+FTD NGE KTWTGQGRTPKPIA Sbjct: 61 FLELMKADGINPEELFAMDS-AMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 QALAEGKSLDDFLI 134 QALA GKSLDDFLI Sbjct: 120 QALAAGKSLDDFLI 133 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 136 bits (342), Expect = 2e-31, Method: Composition-based stats. Identities = 59/134 (44%), Positives = 87/134 (64%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +L++L +IR LR +EF++ LE +LEKF+++T ERR+ E+ QR+ ER E+I+ Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + L+ DG+ +L+ + + R KK PR AKY++TD NG+ KTWTGQGR P + Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 QALAEGKSLDDFLI 134 L GK+L DF I Sbjct: 121 AELNTGKTLADFEI 134 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 134 bits (337), Expect = 9e-31, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ L+ L NIR+LRA R+ + L+E+ EKF V +E+ + E Q E Q+K++ Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 WLELMKADGINPEELL---GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + EL+ +G++PE+LL G ++ A A KR PRPAKY++ V GE +TWTGQGR P Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 PIAQALAEGKSLDDFLI 134 IA A+A G+SLD FLI Sbjct: 120 QIAAAIASGESLDAFLI 136 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 134 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 85/134 (63%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ELM+ +GI PEEL KR PRPAKY F D NGE KTWTGQGRTP+PI Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 QALAEGKSLDDFLI 134 AL +GKSL DF I Sbjct: 121 NALNKGKSLSDFEI 134 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++ N R+LRA +E S++ LEE+L KF + +R+E + + +Q K++ Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 WLELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L +K +GI+PEEL+G +S+A + KR PRPAKY + D NGETKTWTGQGR P P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IAQALAEGKSLDDFLI 134 + + + E S++++LI Sbjct: 120 LQEVMNEKGSIEEYLI 135 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L L + R +A +E S+D L E K + ER+EEE+ + AER +I+ Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++ G++ E+L G+ +++ A KR PRP KY+ T V+GE WTGQGR P Sbjct: 61 ILAQIENSGLSIEDL-GDVTSSVKTAKTKRAPRPPKYQIT-VDGELIQWTGQGRMPTVFK 118 Query: 121 QALAEGKSLDDFLI 134 Q + GK++ +FLI Sbjct: 119 QQVDSGKNMSEFLI 132 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 130 bits (328), Expect = 9e-30, Method: Composition-based stats. Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 1/135 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE E+ ER K+ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + E++ ADGI+P ELL + +A KR RPAKY + D NGETKTWTGQGRTP I Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 QALAE-GKSLDDFLI 134 +A+ E GKSLDDFLI Sbjct: 121 KAMDEQGKSLDDFLI 135 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 2/130 (1%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 Q LN IR +RA ARE +++EE+ EK + + R+E + + + +ER EK+ + E+ Sbjct: 9 FQGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREM 68 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 + DGI+P +L + +A R PRPAKY++TD +G KTWTGQGRTP +A ALA Sbjct: 69 LLQDGIDPADLADSELPRKQKAS--RAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANALA 126 Query: 125 EGKSLDDFLI 134 GK ++DFLI Sbjct: 127 AGKKIEDFLI 136 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 127 bits (320), Expect = 8e-29, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 86/129 (66%), Gaps = 1/129 (0%) Query: 6 QSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELM 65 + L+NIR+LRA ARE ++L++M +KF V +E RE+ E++ +E +R + LE++ Sbjct: 9 KVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELLEMI 68 Query: 66 KADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 ++G + EEL G S + R + Q PAKY+F +VNGE + WTG+GR PK I +A+A Sbjct: 69 ASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEAIAA 127 Query: 126 GKSLDDFLI 134 GK LDDFLI Sbjct: 128 GKKLDDFLI 136 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 127 bits (319), Expect = 9e-29, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++++LNN+R LR+MA+E SI+ LE ++EKF++V +E++ EE + +R ER+ ++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + EL+K DGI +EL + A KR P AKYK+ + NGE KTWTGQGR PK I Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 QALAEGKSLDDFLI 134 L GKSL DF I Sbjct: 121 LQLNAGKSLSDFAI 134 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + L+NIR+LRA ARE + L + +EK V ER +E +++QR + E + + Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPR-PAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 M G++P LL SS + R+GK +P P KY+ D +G T W+G+G+ P A Sbjct: 70 YMVELGLDPA-LLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAA 128 Query: 123 LAEGKSLDDFLI 134 L G++ DD LI Sbjct: 129 LDAGRNKDDLLI 140 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 86/130 (66%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+SL NIR+LRA+A++ +++ L+ + EK ++ E+ EE +Q++ E ++ E ++ + E+ Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +K DG++ +EL + + K PRPAKYKF D NG KTWTGQGRTPK + AL Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EGKSLDDFLI 134 GK L+DF I Sbjct: 124 SGKKLEDFAI 133 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L++ N+R+L A R+ SI+ LE L+K + ++R+E ++ L + K+ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + +LM+ DGI+P E S + +K P P KY++ D E KTW+G GRTP+ I Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGNVK--QKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 QAL-AEGKSLDDFLI 134 A+ EGKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+ +E S++ LE + +K + R+ +E +QQ E+ EK++ Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++A G++ +L + A ++ K + RP KY D G WTG GR PK Sbjct: 61 ILAQLEAAGLDVNDL--QKAEPAKKSTKVGKKRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 QALAEGKSLDDFLI 134 L GKSLD +L+ Sbjct: 119 AELDNGKSLDSYLL 132 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 121 bits (303), Expect = 7e-27, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+A +E ++ LE + KF V +RREEE ++QR+ +Q+KI Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 WLELMKADGINPEELLGNSSAA---APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + M GI ++L KKR P+P KY++TD NGE +TWTGQGR PK Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 PIAQALAEGKSLDDFLI 134 + A+ GKSL+ FLI Sbjct: 121 AMKTAVDNGKSLEAFLI 137 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 118 bits (296), Expect = 5e-26, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ L +LR + S+ LE+++ V+T+++R EEE E+ KI + Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M+ G++ +L+ A K KY+ D G W+G+GRTP Sbjct: 61 IRQSMQDAGVDINDLMSLIGETAAPKKK----VQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 QALAEGKSLDDFLI 134 +G + DD LI Sbjct: 117 AYFDKGFTKDDCLI 130 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 4/132 (3%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L NIRT+R RE L E EK V +ER+ E E +Q EL +++ K L Sbjct: 7 EVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKELL 66 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + ++G EEL GN + R+P KY F + NGE K W+G GR PKPI A Sbjct: 67 AFIASEGFTLEELNGNGITKRKKPPVHRKP---KYTF-EENGEMKVWSGVGRKPKPIEVA 122 Query: 123 LAEGKSLDDFLI 134 L EGK+L DFLI Sbjct: 123 LNEGKTLSDFLI 134 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L + R L+ +E S++ L++ EK V ++R E + ++ AE+ +I Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 WLELMKADGINPEELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M A G++ + N ++ + ++ ++ RP KY + V+G WTG GR P Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYSIS-VDGVRTDWTGIGRMPVVF 119 Query: 120 AQALAEGKSLDDFLI 134 ++AL+ GK L+DF + Sbjct: 120 SEALSSGKQLEDFSV 134 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 62/133 (46%), Positives = 92/133 (69%), Gaps = 2/133 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + + L+NIR+ RA ARE + ++L+EM EK V +ERR + E++ E A R+EK Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 L+L++ +G EELLG+ + + KK + PAKY+F + NGETKTWTG+GR PKPIA+ Sbjct: 68 LQLIEGEGFTAEELLGDDVNISKKRSKKPKA-PAKYEFVE-NGETKTWTGKGRKPKPIAE 125 Query: 122 ALAEGKSLDDFLI 134 AL+ G++L++FLI Sbjct: 126 ALSAGRTLEEFLI 138 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM +K VV +ERREE E++ E E + K Sbjct: 11 GIISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQA 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQP--RPAKYKFTDVNGETKTWTGQGRTPKPI 119 +E + + G++PE LL +A + +K + R AKY+F D NGE + W+G G+ P + Sbjct: 71 IEYIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLAL 130 Query: 120 AQALAEGKSLDDFLI 134 + L EG ++DFLI Sbjct: 131 QKLLDEGHFMEDFLI 145 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 L+ +NN+R+LRA A+E ID L E EK V +ER +EEE+ ++E +++E + + Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 ELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + GINPEE+ ++ + R+ R KY++ D NGE + WTGQGR P+PI+ Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 QAL-AEGKSLDDFLI 134 +A+ EGK L+DFLI Sbjct: 124 EAIKNEGKKLEDFLI 138 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 ++ L + R +A +E + L E+ EK + ++R+ +E + + + +I Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L++ G++ ++L ++ ++RQP+P KY T V+GE TWTGQGR PKPI Sbjct: 66 LKSLIEEAGLSLDDL------SSTPIKRERQPKPPKYAIT-VDGEQVTWTGQGRMPKPIK 118 Query: 121 QALAEGKSLDDFLI 134 A+ G SL+ FLI Sbjct: 119 AAIDNGASLESFLI 132 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 7/132 (5%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L++ R ++ + +L ++ K + E ++E++Q + R EK S L Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L+ ++G +PEEL+ A K R R KY++ D G K W+G GR P+ I + Sbjct: 68 ALIVSEGFSPEELI------TVAAIKTRSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 LAEGKSLDDFLI 134 L G +LDDFLI Sbjct: 121 LNSGATLDDFLI 132 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 107 bits (266), Expect = 1e-22, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 5/137 (3%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 +++ L+ I +LR A+ ++ LE++ + +V +E +E E ++++K Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGK----KRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 L++++ G+N + + + + K K + R KY+F + NGE K W+G G+ P Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPL 129 Query: 118 PIAQALAEGKSLDDFLI 134 + + L EG SL++FLI Sbjct: 130 GLQKLLNEGHSLNEFLI 146 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + +SL + LR A+ + + LE + + + +E+REE E ++ ELAE +EK + Sbjct: 12 ITSESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAI 71 Query: 63 ELMKADGINPEELLGN--SSAAAPRAGKKRQPRPAKYKFTDVN-GETKTWTGQGRTPKPI 119 + ++ G++PE + + + +K + PAKY+FT G+T TWTG GR K + Sbjct: 72 KYLEELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGL 131 Query: 120 AQALAEGKSLDDFLI 134 + G SLD+FLI Sbjct: 132 QLLIDAGHSLDEFLI 146 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + L + R L+ RE LE + + E+R E +Q++ +R+EK + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L L++++G +P EL+ + A K + Y++ + NG K W+G GR P I Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 QALAEGKSLDDFLI 134 Q L GK L+ FLI Sbjct: 114 QELDAGKPLESFLI 127 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 99.4 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 57/131 (43%), Positives = 78/131 (59%), Gaps = 1/131 (0%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 M+ L N+R+LRA ARE S+ L+E L+KF V +ERREEEE E++ K+ + + Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 +++A+GI EEL+ A K+ Y F+D NGE KTWTGQGRTPK + Q L Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARPAK-YTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 AEGKSLDDFLI 134 G L +F I Sbjct: 120 DNGAQLSEFEI 130 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 89.0 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS++L+ N RA A+E S+ LE ++ F ++ +EEE + E A + + Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L+ G+ EE+ K + KY+ T V GET WTG+GRTPK Sbjct: 61 IANLIAKSGLTMEEVA--LLTTPKAGATKGKTVEPKYRLT-VAGETHEWTGRGRTPKVFQ 117 Query: 121 QALAEGKSLDDFLI 134 + G S + I Sbjct: 118 EYFDAGNSRESVEI 131 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 88.6 bits (218), Expect = 5e-17, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 5/109 (4%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 +E E F V K+ E+ +Q+ EL + I + M G+ E++ Sbjct: 31 MEMSDEDFNQV-KDNLEKAIEQRNELKDSLAIIKKY---MDDAGVTAEDVYREFGKKLQT 86 Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K KY++ + NG+ W+GQGR P IA+A+ G SLDDFLI Sbjct: 87 GRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIAEAIKAGGSLDDFLI 134 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +L+SL++ R + M + S+D + ++ + + E+ E + ++++ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEKELEAKMAAEIEERERQELEA 207 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + I+ +L + K T G+ + W G G P + Sbjct: 208 LRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAALQ 267 Query: 121 QALAEGKSLDDF 132 L EG L DF Sbjct: 268 SLLDEGFELSDF 279 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 82.0 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + + R A++ S+ L+ + K+ E +++ RE R + Sbjct: 2 LSAIAKSKTAARNAAKDLSLVELKSAIANLTAAAKQ--IEVKEKTREDKRRAADLKKLQS 59 Query: 64 LMKADGINPEELLGNSSAAAP--------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 +MK G+ E + + KR P P KY+ T V GET WTG+GRT Sbjct: 60 MMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYEIT-VAGETHQWTGRGRT 118 Query: 116 PKPIAQALAEGKSLDDFLI 134 P + + G LD LI Sbjct: 119 PIVFREFMENGGDLDSCLI 137 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 79.4 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 7/111 (6%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL--LGNSSAAA 83 L++ +++ + KE R++ +++++ ER + +++ EL+K G+ +L G S+A Sbjct: 7 LQQQIQEAEAIVKELRKQLDEERK--GERMQAVASAKELIKTHGLTAADLGFSGKGSSAK 64 Query: 84 PRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AG KR AKY+ + KTWTG+G++P +A LA G + DDFLI Sbjct: 65 RPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQLAAGYTKDDFLI 112 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 78.2 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 + ELM+ +GI PEEL K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+D LE+++++ ++R+ E + + + E+ K G+ P++LL +S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEKMAK---------NLGVAPQDLLKSS 57 Query: 80 SAAAPRAGKKRQP------RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + K RPAK KF D N TWTG+G+ P + AL++G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALSKGAKLEDFA 117 Query: 134 I 134 + Sbjct: 118 V 118 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 77.0 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 11/138 (7%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L R +A+ + +I+ L+ +L + E+ E ++Q + ++ + Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK-----YKFTDVNGETKTWTGQGRT 115 E + G++ ++L+ S R KKR+ K Y++ G+ KTW G+G Sbjct: 61 MREEILNKGLDFDKLV--SLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNV 114 Query: 116 PKPIAQALAEGKSLDDFL 133 P+ + + L EG L DFL Sbjct: 115 PEEMQKMLDEGLELADFL 132 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 75.5 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 T+ + S++ L+ K E R + ++ + K G + Sbjct: 14 TMAKALEKMSLEELQAHQRDVEATIK---------GYEKKRRADCLAELKAVAKKHGFSL 64 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +E G ++G K P+ K+ + +++TWTG+GR P + +AL+ GKSLD+F Sbjct: 65 DEFTGG------KSGSKSGPKGVA-KYANPADKSQTWTGRGRQPNWVKEALSSGKSLDEF 117 Query: 133 LI 134 I Sbjct: 118 AI 119 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 74.0 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 E E ++RE E+ + +EL +A G++ EE+LG + G R+P AKY Sbjct: 19 ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLG-------KVGPARKPVEAKYCH--P 69 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TWTG+GR P + + LA GK+L+D I Sbjct: 70 QNPELTWTGRGRKPLWVQELLAAGKNLEDLAI 101 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 4/92 (4%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 E E + R+ + Q+ L + + G++ EELL AA + K + + + ++ + Sbjct: 22 EREIKSRQHQDLQKAREQILAIAQEAGVSVEELL----AAGGKKSKTGKGQKVQARYQNP 77 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++TWTG+GR PK IA+ LA+GK+LDDF I Sbjct: 78 SDNSQTWTGRGRQPKWIAEGLAKGKALDDFRI 109 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 72.0 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 14/125 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ ++ + K ++++ + A + + KA G + EEL G ++ Sbjct: 1 MSIDLTGLSAKQLGALIKNAKKQQTVVAK-RAPIAKVRTQLTRAAKAQGYSIEELFGAAA 59 Query: 81 AAAP-----------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 +A P RAG+K KY+ + +TWTG+G+ P+ +A+ A GK + Sbjct: 60 SAGPGRPAAAGKPGPRAGRKLGKVAPKYR--NPANAQETWTGRGKQPRWLAELTAAGKKV 117 Query: 130 DDFLI 134 +DFLI Sbjct: 118 EDFLI 122 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM EK VV +ERRE+ E++ E AER+ K Sbjct: 11 GIISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQEL 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 L+L+ +G +PEELLG S AP++ KK P+P Sbjct: 71 LQLIAGEGFSPEELLG-LSEEAPKSRKKTLPKP 102 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 69.7 bits (169), Expect = 2e-11, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERRE--EEEQQQRELAERQEKISTWLELMKADGINPEE 74 MA+ + LE++++ R + R EE + E E+Q EL+++ G N + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLGNSSAAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 L G+ + GK+ R+P KY+ + ++TW+G+GR PK + L Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPE--NPSETWSGRGRKPKWVEAHLE 118 Query: 125 EGKSLDDFLI 134 G +++D LI Sbjct: 119 AGGNMEDLLI 128 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 65.5 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 14/103 (13%) Query: 37 TKERREEEEQQQRELAERQEKI-----STWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 E R E Q+ +A++Q + + + ++ + + EE+L K + Sbjct: 28 VDELRAITENAQQLIAQKQHQRLYDAYTQFEKIAEESNASIEEIL-------QAGEKLEK 80 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R KY+ TD + +TWTG+GR P + +ALA G+ L+DF I Sbjct: 81 KRSIKYRNTD--NDEETWTGRGRKPTWLVEALAAGRRLEDFAI 121 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 10/105 (9%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 L+K ++R E E++ LA + + G+ E+++ + K Sbjct: 13 LKKLASKIEKRIVEVEKESLHLA-----LKEMRAVADKLGVAFEDVIALHKGKGRKPSTK 67 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A K+ + + ++TWTG+GR P + AL GKS+DD I Sbjct: 68 -----ATAKYANPDDPSQTWTGRGRKPAWVNAALEAGKSIDDLAI 107 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 64.7 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQP 92 ++ + E++ ++ E + +L+ G+ + + +AA AGK R P Sbjct: 6 ELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAGKTRTP 65 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ NGE TW+G+G+ P + +A G+ +DFL+ Sbjct: 66 VAVKYR--GPNGE--TWSGRGKAPNWLTSLVAHGRDKNDFLV 103 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 64.7 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK---- 96 R ++E +R+ A + + +L + G++ +E++ + A PR + + PAK Sbjct: 17 RIDKEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMASPVFATPRKARSKTAAPAKAPLP 76 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KF N W+G+GR P + LA G SLD + Sbjct: 77 VKFRHPNNRELAWSGRGRKPHWVEAWLANGGSLDALAV 114 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 64.3 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 13/115 (11%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 E S++ L+ + E+ + ++++ + + +E+ + G + E+LL Sbjct: 7 ELSVEELKRLQEEAEALIASKKDQAIEDA---------YNQIIEIAENVGFSVEQLLEFG 57 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + +K + ++ + N +TWTG+G+ P+ + + +G L+DFLI Sbjct: 58 AQKRKKTTRK----SVEPRYRNKNNAEETWTGRGKQPRWLVAEIEKGAKLEDFLI 108 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 9/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + L + EK V E+ E++ E +++++ A ++ EL Sbjct: 9 MQFNELWRLHEKITKVLAEKIVAEKR------ELEKRLAQLNRSDVASKVDASELSPALV 62 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A +P K + P K+ + ++TW+G+G+TP A AL G+ +DDF I Sbjct: 63 AGSPPRRKYPRVLP---KYRNPLSPSQTWSGRGKTPHWFANALKMGRKIDDFRI 113 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ + E+ E+ K A G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAKLANREKALAVVAVEKIAK---------AHGFTLA 51 Query: 74 ELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 EL + S +K+Q + + KF +++ KTWTG+GR P QALA GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQALAAGKTPDEM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 62.0 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 15/116 (12%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 RE S+ L+++ ++ + R E RQE + + G+ +E++G Sbjct: 8 RELSLSKLKQLQKEAALAVATR---------ETQLRQEARAKLESVAAEYGLGLDEIMGA 58 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + GK P + + +TW+G+GR P + + L G L ++LI Sbjct: 59 PT--LNKGGKMSYP----PLYRNPGDPEQTWSGRGRRPLWLLKLLETGHDLSEYLI 108 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 62.0 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 8/96 (8%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ-----PRPAKYK 98 E+ + AE I+ LM GI +L + S P K KY+ Sbjct: 23 EQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSPVKPAKAAKTGGTAGRKVAVKYR 82 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 T TW+G+G P + ALA G+ +++F + Sbjct: 83 NTATGD---TWSGRGLQPNWLKAALASGRKIEEFSV 115 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 62.0 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 14/115 (12%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 ++ L ++ ++ E ++RE E+ ++ K G EELLG Sbjct: 5 TLTVSQLRDLQQQIPA---------EIKRREAQEKVNVLNELRAFAKTRGYAIEELLGKE 55 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G K K K+ WTG+GR PK + +A G +L+ L+ Sbjct: 56 AKVKAATGNK-----VKVKYRHPQNPELEWTGRGRKPKWVEAWVANGATLESLLV 105 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 62.0 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S+ L+++ + + + + R AE K G + EL + Sbjct: 9 LSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELAEMTP 59 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A +KR KY+ + TW+G+GR P IA AL GKSL+DF I Sbjct: 60 A------QKRAAVAPKYRHPE--NPEITWSGRGRKPAWIAGALEAGKSLEDFAI 105 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 62.0 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R+ E+ +R+ ++ + G + E+ G + K P AKY+ Sbjct: 28 KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSLAEITGMAPRKGKTGPKSSAP--AKYR 85 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++TWTG+GR P AL+ G S + I Sbjct: 86 --NPTDISQTWTGKGRQPAWFKDALSNGTSPEAMEI 119 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ + ++K+ + R++ + ER I + G+ +L ++ Sbjct: 4 TLADINSQIKKYDEQIAQLRKQ--AEDLRNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTG-QGRTPKPIAQALAEGKSLDDFLI 134 + + A K+ GE TW+G +GR P+ + +ALA GKSL +F I Sbjct: 62 GSVKRSAGVPAVKAAAKYRGPTGE--TWSGGRGRKPRWVTEALAAGKSLSEFEI 113 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 20/115 (17%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 S + LE + + + + Q + R+ + G EL G S Sbjct: 38 TLSREELEALQAEVAAAIATLERQRKAQAQAELARRAR---------ELGFTLRELTGTS 88 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A P + ++ + +TW G+GR P+ +A+A G++ +D LI Sbjct: 89 ELA-----------PWELRYANPANVNQTWCGRGRKPRWFEKAMAAGRTPEDMLI 132 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 37 TKERREEEEQQ--QRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 +E R+E ++Q ++++ ER+E ++ + G EL+ S A K + P Sbjct: 12 LQEMRKEIDEQIARKKVEEREEVLAEMKAMAAKRGFEFSELVSGKSKA-----KAKDKLP 66 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + ++TW+G+GR P I A+ +G ++DF I Sbjct: 67 PKYR--NPKDASQTWSGRGRKPNWIQDAVKKGAKIEDFAI 104 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 9/90 (10%) Query: 45 EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 ++ Q+ +R+ I + M+ G+ E+L AP P+PA + + NG Sbjct: 2 KEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDAP-------PKPAAPVYMNANG 54 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + W G G P + +A+ G+S++ F + Sbjct: 55 QV--WDGTGPMPDWLQRAVNAGQSIEHFRV 82 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + R ++ ER E +L + G + EL G + P K K Sbjct: 24 DGRVKKALAMARDRERMEIKKRVADLAETHGFSVAELFGGARGRGPGKTKSVGVA----K 79 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + TWTG+GR P + + L +G L DF I Sbjct: 80 YANPENKLDTWTGRGRKPNWVVERLRKGAKLADFEI 115 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 42/67 (62%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKA 67 + ELM+ Sbjct: 61 YKELMEK 67 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ID L E+ + ER E+ +EL ER ++ D L +S Sbjct: 11 MPIDDLWSFHERISKILAERITSEK---QELEERLAVLNRGRNAFGGD-------LAHSL 60 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + +K KY+ + ++TW+G+G+ P+ + A+ G+ +DDF I Sbjct: 61 DSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIKSGRKIDDFRI 112 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 T+R A E L++ R E+EQ++RE R++ ++ + G++ Sbjct: 10 TIRQAAEELDFVDLQKAS---------RMIEKEQKRREKEARKQAQQEMKQVAQKYGLDL 60 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE-GKSLDD 131 +E++ S A K P K++ + +TWTG+GR PK + E G+ +++ Sbjct: 61 DEIVSGVSKGAGAKATKGNKVPPKFRHPEDPD--RTWTGRGRKPKWVVHWEEELGRDIEE 118 Query: 132 FLI 134 I Sbjct: 119 LRI 121 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 57 KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTP 116 K WL GI+ E + R+ RPAKY+ D TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYR--DPRNAENTWSGTGRRP 83 Query: 117 KPIAQALAEGKSLDDFLI 134 + + L G SLDD I Sbjct: 84 TWLKELLDSGLSLDDLKI 101 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 ++ K+ + P + D + TWTG G+ P + L G SL+ Sbjct: 6 KSEKRPKGEPV---YRDPDNPFNTWTGIGKRPAWLTAKLDAGISLEAM 50 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 15/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 E + + +E+ + + V E + E + I + + GI+ E++ G + Sbjct: 3 ELNPETFQELRARLKSV------AEAAEIARKREAADAIKVIRKTVLQYGISAEDIFGRA 56 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R GK+R P KY + TW+G+GR P+ I G++ D FLI Sbjct: 57 RPNGGR-GKRRGPAAPKYCNPETGA---TWSGRGRPPQWI-----AGRNRDRFLI 102 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 58.9 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 10/117 (8%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + S LE++ ++ R+++ ++ R E+ L A G+ E+++GN Sbjct: 6 KNMSRKELEKLASDVGKSLEKHRKKDLKKVRLEMEK---------LAAAHGVTVEDIMGN 56 Query: 79 -SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ A + K+ D ++KTWTG+GR P+ A+A G++ + I Sbjct: 57 KATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAIAAGQTPESMAI 113 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + L+ + + K + +++ E + G + +L G+ Sbjct: 9 MDLSELKSLRKDVDAAIKTFEDRKKKAALAELEAKA---------AEMGFSLNDLTGSG- 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G+ R+ P KY+ + + TW+G+GR P + +++G + +D LI Sbjct: 59 -----GGRGRKVNPPKYRHPE--NDALTWSGRGRQPDWYKEQVSKGTAPEDLLI 105 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 58.2 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Query: 52 AERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTG 111 AE + I+T E + GI PE+L G A A R P KY+ TW+G Sbjct: 54 AELESIIATIREQIAEYGITPEQLFGRRRAPASG---TRAPVAPKYRDPKTGA---TWSG 107 Query: 112 QGRTPKPIAQALAEGKSLDDFLI 134 +G+ P IA A K+ D FLI Sbjct: 108 RGKAPHWIANA----KNRDRFLI 126 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI L+ + + E R+E +S E + G + EL G + Sbjct: 9 LSIKELKNLQTQVAKAIS---------TFEERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 RQ A K+ + + +TW+G+GR P +ALA GK+ +D I Sbjct: 60 T--------RQRAGAAPKYANPDQPEQTWSGRGRKPHWFVEALAAGKTAEDLQI 105 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 46 QQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGE 105 + E I+ + GI P E+ G S+ R+ R P KY+ Sbjct: 17 AEAMRREEASAVIAKLRAAILEFGITPAEVFGASAKQIRRSP--RSPATQKYRDPLSGA- 73 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G++ DDFLI Sbjct: 74 --TWSGRGRAPRWIV-----GRNRDDFLI 95 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 37 TKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 ++ + + E++ + + + + I +L + G+ EEL + P+ ++ P P Sbjct: 14 LQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKGKRELGPAPV- 72 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +F + TW+G+G+ P + +A+A+G + D + Sbjct: 73 -RFRHPQDASLTWSGRGKRPNWMKEAMAKGMTEDQMRV 109 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%) Query: 39 ERREEEEQQQRELAERQE---KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPA 95 + + +E +Q E A R E + + G+ PE++ G + P Sbjct: 180 KAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFG-ARRGRRGQQVHASPTVP 238 Query: 96 KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ TW+G+GR P I GK + FLI Sbjct: 239 KYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 269 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S D ++ + + + +++ +ER+E + EL G+ + + S Sbjct: 1 MSHDFSGYTAQELQSLID--AATKALKEKLESERREYLRQMNELASKAGVRFQIIEDLSK 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ PAKY+ + + + W+G+G P+ + LA+G+ + +F I Sbjct: 59 GGGAPSTRRGAKVPAKYQ--NPHNPAEKWSGRGVKPRWLQAFLAQGRDIKEFEI 110 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ + + + K+ E+ + EL ER E + + G + +E+L + Sbjct: 1 MSIDLNKMSRKDLLQLRKD--VEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPA 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R K KY+ + E TWTG+GR P + AL+ G + D I Sbjct: 59 KGAARKSKA----SPKYRNPENPDE--TWTGRGRKPHWVHTALSNGVDISDLEI 106 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 E+R +E+++R+ + +E + GI EE L + R G R+ P KY+ Sbjct: 23 EKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEALSDL---NGRTGPSRRRVPPKYR 79 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GRTP+ I + +G S ++ I Sbjct: 80 HPHDPD--TTWSGRGRTPRWIQEWEQQGGSREELRI 113 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 E +++E + E+ + G E+L R+ AKY + ++TW Sbjct: 26 EERKKKEAFAELDEIARKMGYPLAEILTMVETKP------RKTVAAKYA--NPANPSETW 77 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 TG+GR PK + ALA GKSL+D I Sbjct: 78 TGRGRKPKWVEAALASGKSLEDLTI 102 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAE-----RQEKISTWLELMKADGINPEELLG 77 L ++ F E +E+ QR++ E +++ I M I +EL Sbjct: 15 YQYLSIIIMNFMSTITELQEQLVAIQRQIDEQRALGKKQAIGEIKAKMAEFDITVDEL-- 72 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S + R ++++P KY+ +D +TW G+G P + A G + D+L+ Sbjct: 73 -ESKGSSRGFREKKPSVIKYRKSDA----ETWVGRGPKPVWVKDVEAAGGKISDYLV 124 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 10/120 (8%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 I+ L VV E+R++ +R + G EEL G Sbjct: 2 TIDIESLSLRELGALVVAAEQRKQLISSRRPAS---AVRRMLKAAAAEAGYTLEELFGGE 58 Query: 80 SAAAPRAGKKR-----QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +K AKY+ D + TW+G+GR P+ +A + +G + DFLI Sbjct: 59 ANEEAAPRRKPARRRTGKVAAKYR--DPEYKRLTWSGRGRMPRWLASKVQKGHKVTDFLI 116 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 18/116 (15%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 ++ S++ L+E+ + +E +QE + + G N EEL Sbjct: 7 KDLSLEELKELRVEIAQAIT---------AQERHCKQEALEQLQAKARQLGFNLEELA-- 55 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R A ++ + + W G+GR P+ QA+A GKS ++ I Sbjct: 56 -------PAMQRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAMAAGKSPEELQI 104 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 55.5 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ L+ E + + + + ++AE+ + I+ M A I +EL G + Sbjct: 3 DLETLKAQREILQAQLAD--IDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 A K + P +Y+ + TW+G+GR PK I + Sbjct: 61 PRHAAAKGKGTVPVRYRNPETGD---TWSGRGRRPKWITASAD 100 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 26/116 (22%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + + D L+EM + E ++R+ E+Q LE+ GI+ +L+ Sbjct: 5 KNMNFDELQEMRIQID---------MELKKRQAKEKQNARRKILEIANTHGIDIADLVSK 55 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + N + + W G+GR PK I + L G +LD+ + Sbjct: 56 ER-----------------HYRNPNNQWELWNGRGRRPKWIKEWLENGYTLDELEV 94 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 15/114 (13%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L ++ E+ V R E+ REL +R ++ ++ + Sbjct: 19 MTVDELWQLHEEIGRVLSVRLTSEK---RELEKRLAQLRGEKGASRS----------GAE 65 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R +K AKY+ + N +TW+G+G+ P+ +A L G+S+D+F+I Sbjct: 66 TDAARERRKYPRVVAKYQ--NPNEPMETWSGRGKVPRWLAAELKSGRSIDEFVI 117 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 55.1 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 R A+ R+ + LE+++ + + + E+ +++Q+ E+ + M+ I Sbjct: 24 RKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---MEEHNIT 80 Query: 72 PEELLGNSSAA-APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +E L P K KY+ +V+G++ TWTG+GR P A+ Sbjct: 81 ADEALQIFENLFGPSTKSKSTFGKVKYRI-EVDGKSITWTGKGRRPAAFAEMSD 133 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 54.7 bits (130), Expect = 8e-07, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 ++E ++ E Q I + + I +EL + A + R Y+ Sbjct: 30 QQEAKRLPEQEIQSVIESIQKQTTYYNITLQELGYTNVPDDGLARRNSSKR-VYYR---- 84 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 N E +TW+G GR P+ + +AL G +DFL+ Sbjct: 85 NEEGQTWSGVGRQPRWLKEALLNGMKKEDFLV 116 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 + + ++ E I+ + + G+ ++L +A R KK P PAKY+ Sbjct: 15 QAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPKK-APLPAKYQDPKS 73 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+G+ PK I GK+ + FLI Sbjct: 74 GN---TWSGRGKPPKWIV-----GKNRERFLI 97 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L E+ E+ V + + E+++ R L L G N + + Sbjct: 26 MTVDELWEIHERISQVLCSKIQSEQRKLDGHLSR-------LRLGVTSGANQQ---SDDE 75 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A + KY+ + + TW G+G+ P + L GKS+DDFLI Sbjct: 76 SGPKPARRPYPKVYPKYR--SLKDPSLTWAGRGKQPLWLIDELKSGKSIDDFLI 127 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 13/109 (11%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG-- 87 + + KE R+ ++Q E+ I EL+ G++P EL + +A Sbjct: 11 IAELEQKLKELRKAADEQLAR--EKASIIGQINELIAKYGVSPHELAFPKTTKGSKASSS 68 Query: 88 --KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +K P KY+ TWTG+G+ P I A + D+FLI Sbjct: 69 KFQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDA----ANRDEFLI 110 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 11/102 (10%) Query: 38 KERREEEEQQQRELAERQEKI-----STWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ R+ +R L +R ++ EL + ++ EL G ++ K Sbjct: 12 EDLRQLMANAERTLRDRHQQRVHSLRKEAEELAASLNMSVAELFGLEKSSKLANKK---- 67 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY + +TWTG+G+ P +A ALA G+SL+ F + Sbjct: 68 LPAKY--INPANPAQTWTGRGKRPHWLADALARGESLEKFAV 107 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFT 100 ++ +E Q++ + + ST L+ ++ I+ E +A + P +YK Sbjct: 13 KQIQELQKQADKLKAAERSTALQEVREQ-ISVFEFTAAELGFKGKASLAGKKVPTRYK-- 69 Query: 101 DVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + TWTG+G P + A+ G L+DFL+ Sbjct: 70 --DDKGNTWTGRGHRPGWLKAAIESGAKLEDFLV 101 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R +E+ + A R + I L L+ + PE+L ++ + GK + P KY+ Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLF-----SSTKKGKAKSKAPPKYR 68 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KTWTG+G P + K+ DD+LI Sbjct: 69 DPETG---KTWTGRGPIPSWLKD-----KNRDDYLI 96 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 45 EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 E +QR + +E + + G EL+GN+ A+ + K AK + Sbjct: 21 EIRQRRKQQAKEAQRELKAVAEKYGFALNELVGNAQPASGQKAK------AKAIYRHPED 74 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KTW+G+GR P+ I + +G+ +D+ + Sbjct: 75 PSKTWSGRGRRPRWINEWEQKGRDIDELRV 104 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%) Query: 37 TKERREEEEQQQRELAE--RQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 E+ + +++EL E R+E + ++ G EL + KKRQPR Sbjct: 10 IDEQIAALQARKKELLENKRKEVLKEIKRAIQIYGFTVNEL------GLSGSSKKRQPR- 62 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + N +TW G G PK + + +A G L+D LI Sbjct: 63 ----YANPNDPDQTWGG-GARPKWLKEYMARGGKLEDCLI 97 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 11/118 (9%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + S LE++ ++ +EE++ + AE+ K + G + +EL Sbjct: 6 KGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLDELSDV 56 Query: 79 SSAAAPRAGKKRQPRPAK--YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K AK K+ + + TWTG+GR PK + L +G +L+ I Sbjct: 57 KPVKRAPKAAKSSDGRAKVAPKYRNPDDANMTWTGRGRKPKWVEAHLEKGGTLEQIAI 114 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%) Query: 39 ERREEEEQQQRELAERQE---KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPA 95 + + +E +Q E A R E + + G+ PE++ G + P Sbjct: 82 KAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFG-ARRGRRGQQVHASPTVP 140 Query: 96 KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ TW+G+GR P I GK + FLI Sbjct: 141 KYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 171 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 19/113 (16%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 + LE+ + K + +++R E ++ E+A K G+ E++L + Sbjct: 12 DLTALEKDIAKAKATLEKKRIAEARKAMEMA------------AKEYGMTVEDVLSSGPD 59 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K Q AKY + +TWTG+GR P +A+A G I Sbjct: 60 -----RKSGQKGVAKYA--NPANPDQTWTGRGRQPTWYREAIAAGTDPASMEI 105 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLE----LMKADGINPEELLGNSSAAAPRAGK 88 R + K ++E E +QRE+ +I +E G + ++ + Sbjct: 10 MRQIAKLQQEAEAIRQREIQGVVARIREAIEHYQLTASDLGFGGPKRGRGAARSKVPVKG 69 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K +P + +F D NG + WTG GR PK A+A G + + + Sbjct: 70 KAKPAVGRVRFRDANGNS--WTGHGRRPKWFVDAIAAGATPESLSV 113 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E +S + + G EL G A +AG+ R Sbjct: 34 DLLAQREKLEKQIEEAKSREYAEVLSDVKQKIADYGFTLAEL-GLGRGKAGKAGRPRAGV 92 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ + TW+G+G+ P+ I GK+ + F I Sbjct: 93 AAKYRDPESGA---TWSGRGKPPRWI-----AGKNREQFAI 125 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 4/93 (4%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQPRPAKYKFTD 101 +++ ++ AE I+ + + ++ +L G + A KR AKY+ Sbjct: 15 KQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAAGKRGTVKAKYRNPA 74 Query: 102 VNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 W+G+G PK + L GK+ + FLI Sbjct: 75 AGAS---WSGRGVMPKWLKAELEAGKAKEAFLI 104 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R + + ++ ER+ + + + G + EL ++A + GK P KY+ Sbjct: 10 KRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSEL---TAAGGAKKGKSGSVNPPKYR 66 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + +TWTG+GR P I A A+G + I Sbjct: 67 --NPDNPDQTWTGKGRRPDWIKAAEAKGVDISTMQI 100 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRP 94 + + Q + + +E+I E + L + + + + P Sbjct: 9 SAAELKNLIASAQDQLVKGERERIKAVREKILQLLEGENLELEQVFPNSKPSPRVKNPVA 68 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY D + TW+G+G+ P +ALA GK+ + L+ Sbjct: 69 PKYAHPD--NPSLTWSGRGKQPNWFKEALAAGKTQEQLLL 106 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 16/113 (14%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 LE + K + + + + + I+ ++M G+ ++ + R Sbjct: 4 LENLQAKIAKL------QAQAEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKKR 57 Query: 86 AGK-------KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 K K KY+ TWTG GR P IA A K L D Sbjct: 58 GRKPGVKTVAKSSASTVKYRDPKTGA---TWTGHGRAPVWIANAKDRTKYLVD 107 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 9/86 (10%) Query: 50 ELAERQEKISTWLELMKADGINPEEL-----LGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 ER + I M G+ EEL + P Y+ N Sbjct: 3 AKTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NA 58 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLD 130 E TW GQG P + +A+ G+SL+ Sbjct: 59 EGLTWDGQGEMPSWLKRAVNAGQSLE 84 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E ++ + M GI+ EL G +A +A + R Sbjct: 6 ELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAARPRAGV 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ D TW+G+G+ P+ I G + FLI Sbjct: 66 APKYRDPDSG---STWSGRGKPPRWI-----AGLDREKFLI 98 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 51.6 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 E L R E I+ + G+ +L R R A+Y+ + Sbjct: 11 ESSPAAMLRRRAEAIAWVRMQIARYGLAYADLTAAGCFPPLR----RASSKARYR----S 62 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E +TW G+G P + +A+ G+S + F + Sbjct: 63 AEGQTWDGEGDMPDWLQRAVNAGQSPEHFRV 93 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L+N R ++ + +E ++ K +ER++EE+ Q+ L Q I L Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKT------WTGQGRTP 116 +L + P KK+ D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 KPIAQALAEGKSLDDFLI 134 K I + L G L +F + Sbjct: 130 KWIKERLEMGFELKEFEV 147 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA---------- 81 K E +++ E+ +++ R ++ E M A GI +EL Sbjct: 10 KLNQQIAELQKKSEELKKKN--RPVVVAELRERMAAYGITAQELTRPVPKARMLKEDFAT 67 Query: 82 --AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + K P PAK++ D E W+G+G PK + + +G S D+FLI Sbjct: 68 PIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLIEQGHSRDEFLI 119 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 E ++E + + M A G+ E+ + S G PAKY+ N TW Sbjct: 24 EAMAKKEALQNAKDSMTAAGLTDAEIAAHFSKVRKPTGVSGMKVPAKYRDRATNA---TW 80 Query: 110 TGQGRTPKPIAQALAEGKSLD 130 TG+G+ P Q +G ++ Sbjct: 81 TGRGKAPTWFNQERVQGGHIE 101 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++ + I L+ A + + ++ + + ++L + + + Sbjct: 1 MSDLIEIQSQIEKLQKQASDIKAREFGKTVQDILA----KMQAFGITLKDLQPGKARGAK 56 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 G G A K P AKY+ + G W+G+G TP+ + Sbjct: 57 GKAKATKVG-----KAGAGVKPAGAPKKVALPVAAKYRGPNGEG----WSGRGLTPRWLT 107 Query: 121 QALAEGKSLDDFLI 134 L +GK+ +DF I Sbjct: 108 ALLVDGKTKEDFAI 121 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L +L ++R LRA R S++ LE L + V +E R ER+ +++ Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEHRT---------REREAALAS 51 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGK 88 +E ++ G++ +E+L A R+ + Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRSAE 79 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 10/107 (9%) Query: 29 MLEKFRVVTKERREEEEQQQRELAE-RQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 M + + ER +++ + AE R E IS L L+ G+ +L + ++ Sbjct: 1 MSNTLQELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTSTKKNKY 60 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + PAKY+ ++ E W+G+G P + GK D+LI Sbjct: 61 SATK-VPAKYRDSETGSE---WSGRGIPPVWLR-----GKDKKDYLI 98 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%) Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 R + +F + TW+G+GR P + + L EG SL D Sbjct: 239 ARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDEGGSLADL 280 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 13/107 (12%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR----- 93 + R E E ++R + R++ + ++ +G++ +L+G++ A + Sbjct: 15 QSRVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLIGSAPVPATEKKPAAKRGRAAAG 74 Query: 94 ------PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + G W+G+GR P+ +A+GKS+++ + Sbjct: 75 KKKEAPTVKYRHPETPGVG--WSGRGRKPQWALDWIAQGKSIEELAV 119 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + ++ ++ E + + E + I L+ + E++ G+SS K Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ +TW+G+G PK + GK D+ I Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL-----AGKDKADYAI 98 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 + +R ++ M GI ++L + R R + GE TW Sbjct: 2 DERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQKTAR--------YRSATGE--TW 51 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 +G G P+ + QA++ G+S+D F + Sbjct: 52 SGDGEMPQWLKQAISAGQSMDHFAV 76 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 18/122 (14%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + +++ L + E+ + + ++R+ + L +A+G+ EL + Sbjct: 6 KSYTLPQLRALREQTARAID---------RLQRSQRETLLRRLSALARAEGLTLAELAED 56 Query: 79 SS--AAAPRAGKK-----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 ++ A R K RQP P KY+ + W+G+GR P +A LA G S+D Sbjct: 57 AAAMKGAERPRKHPRTTPRQPLPVKYRH--PSNRALAWSGRGRQPHWVAAWLANGGSMDA 114 Query: 132 FL 133 Sbjct: 115 LA 116 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L ++ E +Q++ R + + SS Sbjct: 1 MSLEDLFNQVDNLNNDDFEALINHVDKQKKRRARDILAEAQRQASR----------FISS 50 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + +R P +Y+ + + ++TW+G GR P+ + L G S D LI Sbjct: 51 AEGGKPATQRTAMPPRYR--NPHNHSQTWSGMGRQPQWFKENLEHGMSEHDMLI 102 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 + R + E++Q AE+ ++ E + GI +L + A K + + K Sbjct: 16 EIARLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAKKASEAKAPKA 75 Query: 98 -----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + + W+G G PK +ALA GK+ D Sbjct: 76 GRVAGRIKYKDDAGHAWSGYGPKPKWFTEALASGKTEADL 115 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 19/112 (16%) Query: 36 VTKERREEEEQQQRELAERQE--KISTWLELMKADGINPEE--------------LLGNS 79 + + R ++ + Q L ++ ++ ELM G+ E+ LLG Sbjct: 6 IIQARIKKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSERLLGTK 65 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 +A A A + P KY+ TW+G R P I K L D Sbjct: 66 TARAKPATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDVKDRSKFLID 114 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 53 ERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTG 111 ER + I M G+ EEL A P P Y+ N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPKPIAQALAEGKSLD 130 QG P + +A+ G+S++ Sbjct: 71 QGEMPSWLKRAVNAGQSVE 89 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 13/102 (12%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + AER+ I LMK ++ +L + KR Sbjct: 17 LALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDL----QERVQKRNSKRMS 72 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ KTW+G+GR P + G FLI Sbjct: 73 TVPKYRDPATG---KTWSGRGRQPAWL------GNDPAAFLI 105 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 20/114 (17%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S L + E+ E R E + I+ L+ G+ E++ + Sbjct: 6 TSYKELLKQREQLEQQINEAR---------RRELSDAIAQVRSLVSEYGLKAEDVFPSGR 56 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + AG K P KY+ +TWTG+G+ PK I G++ + F I Sbjct: 57 ARSASAGTKVAP---KYRNPATG---QTWTGRGKAPKWIQ-----GENREQFAI 99 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 13/110 (11%) Query: 26 LEEMLEKFRVVTKERREEEEQQQR-ELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 + +ML + + RE + + E++ + E + GI+ EELL + P Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + AKY + G K W+G G PK + GK+LDD+ I Sbjct: 61 RKRRT----SAKY-YDPSTG--KEWSGFGPRPKWLV-----GKNLDDYRI 98 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 55 QEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGR 114 +E+ E++ + + + K RP K F + + +TW+G GR Sbjct: 25 KERKKRAREIIAEAQRQASRFAQDIAPTV--SRKTASKRPPK--FANPDNPEQTWSGMGR 80 Query: 115 TPKPIAQALAEGKSLDDFLI 134 P + +G + + LI Sbjct: 81 QPDWYKAYIDKGGNEKNMLI 100 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 48.5 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 22/127 (17%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 + + L + + + E + + E +S E + + +L ++ AA Sbjct: 1 MAKSLAQVNAQIAKLQREADALKA--KEVAGVVSRIKEAIAIYSLTSADLFDDAVAAVKP 58 Query: 86 AGKKRQPRPAKY------------------KFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 A ++++ A K+ D G TWTG G+ P A+ GK Sbjct: 59 AARQKRTVAAAPVVGKKAPKAAAKKAESQIKYRDEAG--HTWTGHGKRPNWFKAAIEAGK 116 Query: 128 SLDDFLI 134 +D + Sbjct: 117 KPEDLAV 123 >UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS42 RepID=A1W6B6_ACISJ Length = 117 Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG----KKRQPR 93 + R ++E+ Q E+ +S E + GI +L + + R G K + + Sbjct: 16 EIARLQKERDQLREGEKAGVVSRMKEAIAYYGITAADLGLSVTKRKARTGVAQAKNSKVQ 75 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 A + + +TW+G G P+ +ALA GK+ D Sbjct: 76 RAASRIKYKDDAGRTWSGYGPKPRWFTEALASGKTEADL 114 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 + +RA + S+ LE+ + + ++++ +Q L+L+K G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 E+L S+ KR AKY+ +V+GE WTG+GR PK Sbjct: 51 LEDLQDTSA-------DKRTKVKAKYRI-EVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 16/93 (17%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 ++++ K + +++++ ++ + + E + G P+E+ + Sbjct: 33 NSYQEYKQHVKTLQATLDRERKAISAKV--LQEIRECIAEFGFTPQEVFSS--------- 81 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 ++ R KY + V+G TWTG GR P+ I Sbjct: 82 --KKKREPKY-YDPVSGS--TWTGLGREPEWIR 109 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 22/120 (18%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG------------ 77 L+K V ++ E +R L ++ I ++ G++ +E+L Sbjct: 12 LKKLSVAVQK-----ELDRRTLQSKKALIKQVQQMAAEHGLDADEMLAEVGSSGREGSSV 66 Query: 78 -NSSAAAPRAGKKRQPRPAKYK----FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + + A KK+ P K K + + + W+G+GR P + L G L+ Sbjct: 67 KSGAGKAAPGRKKKAPAVKKEKLPPVYWNPVNAQEGWSGRGRKPSWVITFLENGGDLESL 126 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 + + E ++ + A+R + LEL+ G++ +++ R + KY Sbjct: 12 DDLKNEIDRAREREAQRLAQR--VLELLAESGVDVRDMMNPRPRGQGRGRR----ITPKY 65 Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR PK + G++ FLI Sbjct: 66 WNPQTGA---TWSGRGRMPKWL-----IGQNPRQFLI 94 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 5/94 (5%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 ++ +E + + + ++ +E+ K + +++ R +K Y+ Sbjct: 18 KQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVY---ERRNSRKLAKVGLIYR- 73 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + N ++TWTG+GR P + + L EG + DD L Sbjct: 74 -NPNNPSQTWTGKGRRPLWVLELLREGMTFDDML 106 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 11/88 (12%) Query: 47 QQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGET 106 +Q ER I T ELM GI +L+G + R + PAKY+ Sbjct: 24 EQARARERVRAIETIHELMDTYGIKHRDLVGRN---GRRGSYQVSALPAKYRDPATG--- 77 Query: 107 KTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + W G+G P I GK FLI Sbjct: 78 REWCGRGNVPLWIR-----GKDRTRFLI 100 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 + K R + + + E Q I +++ + PE+L + R ++R P Sbjct: 5 LDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFAD-IQRKSRRVRRRAP 63 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ W+G+GR P+ I G+ + FLI Sbjct: 64 ALAKYRDPASGA---VWSGRGRAPRWI-----AGQDRESFLI 97 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN--------SS 80 ++ ++ + R ++ + + R+ I++ ++ M+ I PEE++ ++ Sbjct: 7 AAQQAKIEKEISRLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALGSAKSTRAA 66 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A +A R K+ +TW+G+G+ P+ + G S D FLI Sbjct: 67 APRRKATSDGSKRAVAPKYLHPQ-TGETWSGRGKAPRWLVAEEGNGASRDSFLI 119 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 54 RQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQG 113 R + L+ + E+ G S+ +KRQP +Y+ TW+G+G Sbjct: 40 RLIALEEVKRLVDEFAFSTREVFGTSAV------RKRQPVQPRYRDPATGA---TWSGRG 90 Query: 114 RTPKPIAQALAEGKSLDDFLI 134 R+P I +GK F I Sbjct: 91 RSPAWI-----DGKDRSQFQI 106 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 13/120 (10%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 R A E +++ ++ + +++ ++ + E + + + + G++ ++ Sbjct: 24 RKEAVESYGEMVMATYKELLAQLDDLKQQAKRARA--LELPDVLVGLRKKIVEYGLSQKD 81 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L +A +PR Y+ D TWTG+GR P I G+ + F I Sbjct: 82 LFPPRLGRPKKADALPKPR---YRDPDTGA---TWTGRGRAPAWI-----AGQDRERFRI 130 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 13/105 (12%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR----AGKK 89 ++ +++ E + ++ +E I +LM + PE++ P A ++ Sbjct: 6 ELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAASAQRE 65 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + P P KY KTW+G+GR P + GK + FLI Sbjct: 66 KAPLPPKYMDPKTA---KTWSGRGRAPAWL------GKRPERFLI 101 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 10/107 (9%) Query: 29 MLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 M ++ + +++ E E++ + + + I+ +++ G+ E++ ++ + +AG Sbjct: 1 MTSDYKALLQQKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPSAKSKPDKAG 60 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K+ P K++ + TWTG+G+ PK I EGK I Sbjct: 61 KRSVGEP-KFRNPETGA---TWTGRGKPPKWI-----EGKDRASLAI 98 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 9/88 (10%) Query: 47 QQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGET 106 ++ LAE I + G+ ++ G A + +Y+ Sbjct: 19 EEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPR-PSGSAPRYRDPKTGA-- 75 Query: 107 KTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G + FLI Sbjct: 76 -TWSGRGREPRWIK-----GGRRERFLI 97 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 14/91 (15%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 E + + I LM GI+P EL G A A R K ++ + Sbjct: 16 AEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAPAHRK--------PKARYWNPE 67 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +TW+G+GR PK + G+ L LI Sbjct: 68 -TGQTWSGRGRMPKWLV-----GRELASHLI 92 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 46.2 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 18/113 (15%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 + + L+ L+ +E + + E +S E + I P+++ + Sbjct: 3 TYEELKAQLDALN---------KEAEAAKAREISTALSQIRETVLRYEIRPDQIFPQWT- 52 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K+R P P KY+ +TW G+GR PK + G + FLI Sbjct: 53 RLRSPDKRRGPLPPKYRNPMTG---ETWCGRGRAPKWM-----SGSPREVFLI 97 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 21/116 (18%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + +I L++ L ++ +E R E++ K+ E +K I ELL Sbjct: 5 KSPTIRELQKQLGHLNLIVEEAR---------QKEKKIKLEEIAEQVKLFDITEIELLRA 55 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + RQ AKY D ++W+G+G PK + GK+LDD+LI Sbjct: 56 AGF----VKANRQKASAKYYDPDTG---RSWSGKGARPKWL-----TGKNLDDYLI 99 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA-----GKKRQPRPAKYK 98 + + ++E ++ E ++ G+ +L + ++ + + + + K Sbjct: 17 AKAEAARVSEVAAVVADIKEKIEEYGLTASDLGFKTDKGTRKSVGQAIAEANEKKSVEPK 76 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + NGE W+G+GR P L K+LDD+ Sbjct: 77 YKGPNGEL--WSGRGRAPVWTQN-LPTDKTLDDY 107 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 45.8 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 10/92 (10%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 +++ +++ A +++ ++ L M GI E+ +A K KY+ D Sbjct: 15 QKQINEQKAAGKRDALADILSKMNEFGITIHEIQRRIVPVKAKAAKT-----VKYRLED- 68 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KTW+G+G+ PK + G LDD+L+ Sbjct: 69 ----KTWSGKGKKPKWVKNIEERGGRLDDYLV 96 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE++ + ++ + + + + + T LM+ G+ +++ + + Sbjct: 55 VATLEQIQARL------KKLQAQAEAIVAKQSSAVLETIRGLMEKHGLTTKDIDAHLGSK 108 Query: 83 APRAGKKRQPRPAK------YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + Y+ TWTG GR P IA K FLI Sbjct: 109 KRGPKAGAKAAAKTAKSVAKYRDPKSGA---TWTGHGRAPAWIANVKDRAK----FLI 159 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 14/90 (15%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 E A ++ ++ + G + +++ P G R+ AKY + Sbjct: 15 EARLADERRAAKEAVLTEIRACVDEFGFSLDDVF------PPDGGHGRRKVRAKY-YDPA 67 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +G TW+G GR P I GK + F Sbjct: 68 SGA--TWSGVGREPVWIR-----GKDREQF 90 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 12/74 (16%) Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +++M+ G++ E++ R + KY KTW+G+GR P + Sbjct: 47 IVKMMEVYGLDLEQI----KDGVERQSSPHREVEPKYMDPQTG---KTWSGRGRMPLWMR 99 Query: 121 QALAEGKSLDDFLI 134 K +D+L+ Sbjct: 100 D-----KRKEDYLL 108 >UniRef50_B1FNZ3 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FNZ3_9BURK Length = 115 Score = 45.1 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 +E ++ ERQ + E + G+ E+ G + A + R+ KY+ + Sbjct: 15 AKEVERARCQERQGVLDDVREKVGRYGLQVVEIYGEAQVRALQCLGNRRKIAPKYRDPES 74 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TWTG+G P+ I G++ +FLI Sbjct: 75 GA---TWTGRGLEPRWIR-----GRNRREFLI 98 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 44.7 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 8/123 (6%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + Q LN + + + R + D + ++ + V ++ +E+ ++R+ AERQ KI Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L++ +GI ++L + + P Y NG+ + G GR K + Sbjct: 71 ILLRNEGIGLDDL-----EKHMVSRRSPTVEPKTYLI---NGKKIIYKGSGRMNKVLKAI 122 Query: 123 LAE 125 + + Sbjct: 123 VDK 125 >UniRef50_B2T963 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T963_BURPP Length = 89 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 R E + +Q E ++ ++ + ++ G+ PE+L G + + R Y+ Sbjct: 13 RALEAQAEQLRRHELRQVVAEMRQKIRDYGLTPEQLFGPNLSDLVR-----------YRH 61 Query: 100 TDVNGETKTWTGQGRTPKPIA 120 + +TW G GR P I Sbjct: 62 PETG---ETWNGMGRPPNWIK 79 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MSVMLQSLNNIRTLRAMARE-FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIS 59 M + ++L N R+L AR + + + ++E+ + +R++EEE++Q++ R EK++ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 TWLELMKADGINPEEL 75 +++ ++ +G++ +L Sbjct: 61 QFIQQLETEGLSITDL 76 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 13/106 (12%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKA-DGI-------NPEELL 76 L+ + + + E ++ EEQ++ E A E +T + L++ G + L Sbjct: 67 LDSIAQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRNDIAAYL 126 Query: 77 GNSSAAAPRAGKK-RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 G ++ A K R KY+ G +TW+G+GRTPK A Sbjct: 127 GTTTTARKDVVKTGRSEVRPKYELP---GTGETWSGRGRTPKAFAA 169 >UniRef50_B1FTJ8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTJ8_9BURK Length = 115 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 19/102 (18%) Query: 37 TKERREEEEQQQRELAERQEK-----ISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 + R ++E ++LAE +E+ ++ ++ M I+ EL G + G Sbjct: 8 IAQLRAQQEALNKQLAEAKERETLLVLNEIVQKMGEYRISVSELTG------RKVGVHAN 61 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 AKY+ TW+G+GR P I GK ++FL Sbjct: 62 ELAAKYRDPVSG---STWSGRGRAPAWI-----AGKDRNEFL 95 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 5/91 (5%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 +EE ++ + + + +++ + + +K+ P YK + Sbjct: 10 QEEIKKLQKQANEIRAKEIADIIADIKVKIQLYGITEKDLGFGEKQKKTIFPPLYKKGN- 68 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +TW+G+GR P I + L G +L++ L Sbjct: 69 ----RTWSGRGRQPGWIKEHLEAGGNLEELL 95 >UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriavidus RepID=Q46U69_RALEJ Length = 108 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 19/101 (18%) Query: 49 RELAERQEKISTWLELMKADGINPEELL------GNSSAAAPRAGK-------------K 89 + + I+ E M + ++L+ G S AG+ Sbjct: 3 ESDSAKLAAIAWIREQMDNYALTLDDLIAAGCFDGEPSHGDVEAGEMPGAPDVPAVMAAT 62 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 P+P K N ++W G G P + +A+ G+S+D Sbjct: 63 AAPQPPKKGPIYRNALGQSWDGTGEYPDWLQRAVNAGQSID 103 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 21/118 (17%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQ-----EKISTWLELMKADGINPEELL 76 I L++ KE + E+A+ + +S +L+ G +++ Sbjct: 13 PIIWLQKFRTPMTQSLKELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVF 72 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ TWTG+G+ P I DDFLI Sbjct: 73 PYIPEKTSA--------PAKYRDPATGA---TWTGRGKPPNWIKDQ-----DRDDFLI 114 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 21/112 (18%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE L + E + E+Q ++ + E ++ GI+ +E+L Sbjct: 5 LQELEAQLRDLNIKLSE---------AKQKEKQAALAAFKEQVELLGISQQEVLSALGYI 55 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R K PAKY + G ++W+G+G PK + EGK L+ + Sbjct: 56 VQRKRKA----PAKY-YDPSTG--RSWSGRGPRPKWL-----EGKDLETLAV 95 >UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYC0_EIKCO Length = 97 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%) Query: 29 MLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 E + ++++ E++ QR LA ER++K++ L +M+ I+ ++ AG Sbjct: 3 ARETLDQLLEQKKSLEDRIQRRLASERKKKVNQILAIMRDFEISVADI---------EAG 53 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + +Y+ TW G G+ PK I +A +G + FL+ Sbjct: 54 LKEKQSRPQYRNPKTGA---TWGGVGKRPKWIVEAQEKGIDIKKFLV 97 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 20/115 (17%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 + L LE+ + + RE+ I+ + I PEEL + Sbjct: 3 TYRQLSAQLERLQQKIDKEREKAIADA---------IAHIRAKIDEYDITPEELGFRPAG 53 Query: 82 AAPRAGKKRQPR--PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ A + R P KY +TW+G+GR P + GK+ FLI Sbjct: 54 SSTAAATAKPKRTLPPKYLNPKTG---ETWSGRGRAPAWL------GKNRGRFLI 99 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 12/90 (13%) Query: 45 EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 E + E++ ++ + E + I +E+L P+ + A +F D + Sbjct: 19 ELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALGYLQPKRRR------AAAQFYDPS- 71 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++W+G+G PK + GK+LDD+ I Sbjct: 72 SGRSWSGRGPRPKWLV-----GKNLDDYRI 96 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%) Query: 47 QQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGET 106 + ER ++ EL+ + E+ G + K KY+ Sbjct: 19 KAARSRERNAVLAQVRELVTGYALTAREIFGQGYSD----RAKLFTVGVKYRDPATGA-- 72 Query: 107 KTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P I G+ FLI Sbjct: 73 -TWSGRGRAPAWIV-----GRDRTAFLI 94 >UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z6F8_BURA4 Length = 111 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 10/92 (10%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 + E + E Q+ I +E+M INP ++ + + R G + + P ++ D Sbjct: 26 KHEIDRIRQRETQQIIRCIVEMMVVYEINPH-VVEVALSKRQRGGGRSKAIP---RYMDP 81 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +TW G+GR P + G+ DFL+ Sbjct: 82 V-TGRTWAGRGRRPLWM-----GGRDPADFLL 107 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 8/84 (9%) Query: 52 AERQEKISTWLELMKADGINPEELLGNS-SAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E + + G ++ G + + + P AKY +TW+ Sbjct: 28 EEAAGVLEDIRAKVATYGFTERDVFGRKRATQNGKKPQAGVPGEAKYLNPKTG---QTWS 84 Query: 111 GQGRTPKPIAQALAEGKSLDDFLI 134 G+GR P I A K+ D FLI Sbjct: 85 GRGRAPAWIVSA----KNRDRFLI 104 >UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n=3 Tax=Cupriavidus RepID=Q46MF0_RALEJ Length = 589 Score = 42.0 bits (97), Expect = 0.005, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 12/103 (11%) Query: 35 VVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR---AGKKRQ 91 + + Q ++ A + + + M+ ++ E++ G S K + Sbjct: 492 SLLAQLASVNAQLEQLRATVPKVVKEIQQWMQEYDLSIEDIAGKPSVKPAARAVPTKTKA 551 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P +Y+ +TW+G+GR P I GK + FLI Sbjct: 552 APPPRYRNPKTG---QTWSGRGRAPAWI------GKRRERFLI 585 >UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodobacteraceae RepID=A9EH02_9RHOB Length = 118 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 11/122 (9%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + S LE++L + + +++E + G + + Sbjct: 4 KNELKALSRKELEKLLADVKKALS---------SVQARDQREAKKAATKAAAEFGFSLND 54 Query: 75 LLGNSS--AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + ++ + K + +K F + +TWTG+GR P + +A G + Sbjct: 55 ITETAALVPKKRKTKAKAAKKQSKPVFFNPEDTNQTWTGKGRQPNWYREQIATGMDPEAM 114 Query: 133 LI 134 I Sbjct: 115 RI 116 >UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXE8_LEPCP Length = 98 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQ 112 E++ I LM I+P EL G A A Y+ TW G+ Sbjct: 9 EKEAAIRKIRRLMAFWSISPTELRGRGVPAPRPAPAAAAVAR--YRHPVSG---STWDGE 63 Query: 113 GRTPKPIAQA-LAEGKSLDDFLI 134 G P+ + +A L EG ++D + Sbjct: 64 GPQPQWLREALLYEGYTVDQLRV 86 >UniRef50_B3RIJ8 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIJ8_TRIAD Length = 7662 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKIST--WLELMKADGINPEELLGNSSAAA 83 ++EM K + E+R+ +E+Q+ ELA++ E + LE K + E++ Sbjct: 7262 MKEMEAKLEKIKAEKRKAQEKQRAELAQQLEALQDELQLEQSKDEQYLEEQIAEREKVHE 7321 Query: 84 PRAGKKRQPRPAKYKFTDVNGETKT 108 + KK + +K + D+N + K Sbjct: 7322 EQRKKKDELMKSKIEKEDLNEDEKQ 7346 >UniRef50_B1KCF0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF0_BURCC Length = 111 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 10/92 (10%) Query: 31 EKFRVVTKERREEEEQQQRELAERQEK--ISTWLELMKADGINPEELLGNSSAAAPRAGK 88 +K ++ +E E+++ ER I ++ ++ + + A + + Sbjct: 9 QKLLEQYEQLTQEIERERAVETERLVNLVIERVRQVFAEFHLDID-----VAPRAVQEPQ 63 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 KR+ KY + +TW G+GRTP +A Sbjct: 64 KRKKLTPKYWNPETG---QTWCGRGRTPLWMA 92 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 36 VTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPA 95 + + E+E + R AE++ E+M GI+ E A + R+ Sbjct: 42 ALQTKLEKEVENSRLEAEKR-ICERVREIMAEYGIDAE------VRAGGGRRETRRRAVP 94 Query: 96 KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y + +TW+G+G PK I GK FL+ Sbjct: 95 RYWNPETG---QTWSGRGGEPKWIV-----GKDRSQFLL 125 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEEL---LGNSSAAAPRAGKKRQPRPAK 96 ++ + + + + + T LM + ++ LG+ P + Sbjct: 12 KKLQAQAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLGHKKRGRPALKSAGVQKKGV 71 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 ++ D TWTG GR P IA A K L Sbjct: 72 ARYIDPK-TGATWTGHGRAPAWIAGAKDRSKYL 103 Score = 38.1 bits (87), Expect = 0.081, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 68 DGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGK 127 G + + G+ + P+PAKY+ + TW+G+G P +A K Sbjct: 105 AGASVPAATHAAVKGGTGNGQPKGPQPAKYRHPETGA---TWSGRGPAPAWLAGEKDRNK 161 Query: 128 SL 129 L Sbjct: 162 FL 163 >UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2P0K4_XANOM Length = 130 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%) Query: 35 VVTKERRE-EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + +E R+ E+E+ Q + A+ E +E++ G + A+ GK + P Sbjct: 16 QLLEELRKLEQEEAQLKYAQTLEAFDQVIEVLTQFGNRFNAKQKSQIASLAMTGKTKGPL 75 Query: 94 P------AKYKFTDVNGETKTWTGQGRTPKPIAQ 121 AKY +TW+G+GRTPK Sbjct: 76 SSTGDVVAKYWIPHSG---ETWSGRGRTPKAFKA 106 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 14/101 (13%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ R E+E + L + E+M GI+ E K+ R Sbjct: 14 ELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVE--------VRAGGSKRETRR 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A ++ + +TW+G+G PK I GK FL+ Sbjct: 66 HAVPRYWNPE-TGQTWSGRGAEPKWIV-----GKDRSRFLL 100 >UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia ambifaria RepID=B1Z177_BURA4 Length = 105 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 18/98 (18%) Query: 41 REEEEQQQRELAERQEK----ISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 ++ +++ + ER + + ++ G +++ S A + + K Sbjct: 9 EKKALLEEQLVRERLAIATMVLLEIRQCIEEFGFGVKDVFPAQSGAPGKRRR------VK 62 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 Y F G++ W+G GR P + G+ D FLI Sbjct: 63 Y-FNPETGQS--WSGVGREPVWLR-----GQDRDRFLI 92 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 9/94 (9%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAE-RQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 + + + E +E E + A+ R++ ++ ELM I P EL Sbjct: 1 MTDKSYSQLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNI 55 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 QP +Y+ TW+G+G P IA Sbjct: 56 RYNVQPTRPRYRDPVSGA---TWSGRGHVPAWIA 86 >UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SG34_PELPB Length = 101 Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%) Query: 43 EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV 102 +++ Q+ ER+ + M A I EEL A R P P KYK Sbjct: 15 QKQAQEIINIERKAILEDIKAKMAAYNITMEELERKGKAVKSAP---RSPSPIKYK---- 67 Query: 103 NGETKTWTGQGRTPKPIAQALAEGKSLD 130 ET+ W G+G P+ + + G++++ Sbjct: 68 KSETEYWVGRGPKPQWVKGIESNGENIE 95 >UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=C4KLJ2_BURPS Length = 121 Score = 40.1 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 19/108 (17%) Query: 36 VTKERREEEEQQQRELAERQEKIST---------WLELMKADGINPEELLGNSSAAAPRA 86 V R + ++ R L E + +++M I +++ Sbjct: 16 VVTNRYLDLMKRHRALQEEIAAVRRHDTREIVTCIVQMMMMYEICLDDISDALPRQQRLG 75 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++R R KY + +TW+G GR P+ + G+ +FL+ Sbjct: 76 LRRR--RTPKYMDPESG---RTWSGYGRPPRWM-----AGRDPAEFLL 113 >UniRef50_B2TE45 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2TE45_BURPP Length = 283 Score = 40.1 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 17/112 (15%) Query: 33 FRVVTKERREEEEQQQRELAERQE-KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 + + ++ + Q LA + + + +LM G+ ++ + A G Sbjct: 4 LEQIQAKLKKLQAQADVLLARKAQVAVDQIRDLMLKHGLTTADIEAKAKARRAARGLNGG 63 Query: 92 PRP---------AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + AKY+ TWTG GR P IA K FLI Sbjct: 64 GKAKAVSSGKAVAKYRDHKTGA---TWTGHGRAPGWIASV----KDRTQFLI 108 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 45 EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 + + R +S +++ + +E+ G ++R KY+ Sbjct: 17 KLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLRRRGKLKPKYRDPKTGA 71 Query: 105 ETKTWTGQGRTPKPIA 120 TW G+GR P IA Sbjct: 72 ---TWNGRGRPPSWIA 84 >UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. 383 RepID=Q397M1_BURS3 Length = 114 Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++V + +EE ++ ER + I+ LM I +L+G + + R + Sbjct: 12 QLVVELAELDEEIERARARERVDAIAAVHSLMDTYAIKHRDLVGRNGS---RGSYIVKVL 68 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIA 120 PA+Y+ K W+G+G P I Sbjct: 69 PARYRDPASG---KEWSGRGNAPLWIR 92 >UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodobacter sphaeroides RepID=A4WW11_RHOS5 Length = 110 Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ + A R + + + + + +W G+GR P A+A+G++ ++ Sbjct: 49 QIARTAKEEAARIKGEAGESGKRVSYFNPTNRSVSWNGRGRCPHWFKVAMAQGRTPEELA 108 >UniRef50_B2WD92 Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2WD92_PYRTR Length = 735 Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 E +++ + + +ER ++ ++Q L+E + +S L+ DG++ L N + Sbjct: 263 EEVQRLQALLEEREKQLKEQASSLSEMEASLSEIQSLIPEDGMDMASLHSNEPNDVAQLR 322 >UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=D0IZE2_COMTE Length = 112 Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 10/87 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ ++ ++ E +E ++T +L+ G +++ P ++++ Sbjct: 6 ELIAQKNALDKRIEEARSTEAKEALATVKQLIATFGFTSQQVF-------PWKPEEKKKV 58 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIA 120 A+Y + TWTG+G+ PK I Sbjct: 59 EARYYDPESGA---TWTGRGKPPKWIE 82 >UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RPM6_XANCB Length = 165 Score = 38.9 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 8 LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAE-RQEKISTWLELMK 66 L + ++ A ++ + + ++EK + E ++ + L ++ +++ + Sbjct: 3 LTTLNSIDAEIKQL--EARKRLIEKRDADVPKALEVLQKYAQVLTAVQRRQVAKLIGDAV 60 Query: 67 ADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + G A G+K P KY+ +GE TW G+GR P A Sbjct: 61 PAAVQVARKGGGLQAGPK--GRKLGPVAPKYRI--PSGE--TWAGRGRMPIAFTAWFAS 113 >UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnificus RepID=Q8DF50_VIBVU Length = 167 Score = 38.1 bits (87), Expect = 0.088, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 17/139 (12%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + LQ+L L D ++ + + ++E++E ++++ E I + Sbjct: 7 NEQLQALLQSPDLAEKLASLGGDAVQAFTKAATEAVQVQKEKQEAERKQKIEDL--IDSI 64 Query: 62 LELMKADGINPEELL--------------GNSSAAAPRAGKKRQPRPAKYKFTDVNGETK 107 ++ + I+ EE S+ + +K P +Y+ ++ E Sbjct: 65 ERDLEEESISKEEFALAIAARFKVSVAARTRSTKTSNNKERKNAPTRPQYRIV-LDDEEH 123 Query: 108 TWTGQGRTPKPIAQALAEG 126 W+G+GR+P+ A G Sbjct: 124 VWSGKGRSPEVFRAAKESG 142 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulato... 137 7e-32 UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteoba... 123 2e-27 UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax... 117 1e-25 UniRef50_B0UTX9 Histone family protein nucleoid-structuring prot... 117 1e-25 UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1... 116 2e-25 UniRef50_Q07ZH5 Histone family protein nucleoid-structuring prot... 116 2e-25 UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammap... 115 4e-25 UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Ta... 113 2e-24 UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae R... 113 2e-24 UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteoba... 113 2e-24 UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=... 112 4e-24 UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5... 111 7e-24 UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. P... 111 8e-24 UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter c... 109 2e-23 UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n... 108 7e-23 UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haem... 107 8e-23 UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desu... 107 9e-23 UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuber... 102 4e-21 UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius... 102 5e-21 UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=... 101 8e-21 UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n... 100 1e-20 UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enteroba... 99 5e-20 UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio ... 99 6e-20 UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudo... 98 7e-20 UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enteroba... 93 2e-18 UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein h... 93 3e-18 UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolit... 93 3e-18 UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica ... 90 2e-17 UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photob... 89 4e-17 UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jan... 87 2e-16 UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n... 85 6e-16 UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacter... 84 2e-15 UniRef50_A6VTC1 Histone family protein nucleoid-structuring prot... 83 2e-15 UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n... 82 5e-15 UniRef50_C7RP80 Histone family protein nucleoid-structuring prot... 79 4e-14 UniRef50_B9Z6W8 Histone family protein nucleoid-structuring prot... 78 8e-14 UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae Re... 77 2e-13 UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antar... 76 3e-13 UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteo... 76 4e-13 UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei... 76 4e-13 UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 Rep... 76 5e-13 UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphth... 75 6e-13 UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiob... 75 6e-13 UniRef50_A1WU67 Histone family protein nucleoid-structuring prot... 75 8e-13 UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae Re... 75 8e-13 UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter ... 75 8e-13 UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring prot... 74 1e-12 UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriacea... 74 1e-12 UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rho... 74 1e-12 UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodoba... 74 1e-12 UniRef50_C5CUL7 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_A1B6U3 Histone family protein nucleoid-structuring prot... 74 2e-12 UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp... 74 2e-12 UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodoba... 73 2e-12 UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Ta... 73 3e-12 UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burk... 73 3e-12 UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus... 73 3e-12 UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Ge... 72 4e-12 UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n... 72 4e-12 UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antar... 72 5e-12 UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n... 72 6e-12 UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n... 72 6e-12 UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholder... 72 7e-12 UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax Rep... 72 7e-12 UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii... 71 8e-12 UniRef50_D1UME5 Histone family protein nucleoid-structuring prot... 71 8e-12 UniRef50_A1WX44 Histone family protein nucleoid-structuring prot... 71 1e-11 UniRef50_A9AS00 Histone family protein nucleoid-structuring prot... 71 1e-11 UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; ... 71 1e-11 UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodob... 71 2e-11 UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanico... 71 2e-11 UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteob... 70 2e-11 UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia Re... 70 2e-11 UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax... 70 2e-11 UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n... 70 3e-11 UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Ta... 69 3e-11 UniRef50_B2SWM9 Histone family protein nucleoid-structuring prot... 69 5e-11 UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepI... 69 5e-11 UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderi... 68 7e-11 UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorob... 68 7e-11 UniRef50_C6QA05 Histone family protein nucleoid-structuring prot... 68 7e-11 UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curviba... 68 8e-11 UniRef50_A6GS13 Predicted histone-like nucleoid-structuring prot... 68 9e-11 UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralsto... 68 9e-11 UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n... 68 1e-10 UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rho... 67 1e-10 UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei... 67 2e-10 UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteob... 67 2e-10 UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter ... 67 2e-10 UniRef50_Q0A759 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_D1UM70 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_D0KM80 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_A8LSF2 Histone family protein nucleoid-structuring prot... 66 3e-10 UniRef50_A1TLA4 Histone family protein nucleoid-structuring prot... 66 5e-10 UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petrol... 66 5e-10 UniRef50_A4JS72 Histone family protein nucleoid-structuring prot... 65 6e-10 UniRef50_UPI00016A8021 histone family protein nucleoid-structuri... 65 6e-10 UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antar... 65 6e-10 UniRef50_C6BPP4 Histone family protein nucleoid-structuring prot... 65 7e-10 UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax... 65 7e-10 UniRef50_C5SD38 Histone family protein nucleoid-structuring prot... 65 8e-10 UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 65 9e-10 UniRef50_B4SKF4 Histone family protein nucleoid-structuring prot... 65 9e-10 UniRef50_B2UAC6 Histone family protein nucleoid-structuring prot... 65 9e-10 UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriav... 64 1e-09 UniRef50_A1VV25 Histone family protein nucleoid-structuring prot... 64 2e-09 UniRef50_C5T058 Histone family protein nucleoid-structuring prot... 63 2e-09 UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkh... 63 3e-09 UniRef50_A9C2A8 Histone family protein nucleoid-structuring prot... 63 3e-09 UniRef50_Q0AEM4 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_A4JUS0 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_D0KXX3 Histone family protein nucleoid-structuring prot... 62 4e-09 UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomalle... 62 4e-09 UniRef50_B1FNZ3 Histone family protein nucleoid-structuring prot... 62 5e-09 UniRef50_B1Z3P6 Histone family protein nucleoid-structuring prot... 62 5e-09 UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europae... 62 6e-09 UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n... 62 7e-09 UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacte... 62 7e-09 UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n... 62 7e-09 UniRef50_B1XWK6 Histone family protein nucleoid-structuring prot... 62 7e-09 UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n... 61 9e-09 UniRef50_C9CRV4 Histone family protein nucleoid-structuring prot... 61 1e-08 UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX 61 1e-08 UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella... 61 1e-08 UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n... 61 1e-08 UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=... 61 2e-08 UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS4... 61 2e-08 UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n... 60 2e-08 UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=... 60 2e-08 UniRef50_B2JNN0 Histone family protein nucleoid-structuring prot... 60 3e-08 UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia R... 60 3e-08 UniRef50_A9BLZ8 Histone family protein nucleoid-structuring prot... 59 4e-08 UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei... 59 4e-08 UniRef50_B3EGH4 Histone family protein nucleoid-structuring prot... 58 7e-08 UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-lik... 58 9e-08 UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n... 58 9e-08 UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelo... 57 2e-07 UniRef50_B1FTJ8 Histone family protein nucleoid-structuring prot... 57 2e-07 UniRef50_B1KCC1 Histone family protein nucleoid-structuring prot... 56 3e-07 UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomalle... 56 3e-07 UniRef50_B2T963 Histone family protein nucleoid-structuring prot... 56 4e-07 UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderi... 56 4e-07 UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curviba... 56 5e-07 UniRef50_B2JR07 Histone family protein nucleoid-structuring prot... 56 6e-07 UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomalle... 55 7e-07 UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio ... 55 9e-07 UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Ta... 54 2e-06 UniRef50_B1TFR0 Histone family protein nucleoid-structuring prot... 53 3e-06 UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alterom... 51 2e-05 UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 T... 50 2e-05 UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio ... 46 4e-04 Sequences not found previously or not previously below threshold: UniRef50_A9C2K0 Histone family protein nucleoid-structuring prot... 62 8e-09 UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n... 61 9e-09 UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodo... 59 5e-08 UniRef50_B2TGU8 Histone family protein nucleoid-structuring prot... 58 7e-08 UniRef50_A0B3N4 Histone family protein nucleoid-structuring prot... 57 1e-07 UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia... 56 3e-07 UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y... 56 6e-07 UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n... 54 1e-06 UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3... 54 1e-06 UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomalle... 54 1e-06 UniRef50_B1KCF0 Histone family protein nucleoid-structuring prot... 54 1e-06 UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriav... 54 2e-06 UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkhol... 53 2e-06 UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n... 53 3e-06 UniRef50_A0B4Y5 Histone family protein nucleoid-structuring prot... 52 4e-06 UniRef50_A4JVX9 Histone family protein nucleoid-structuring prot... 52 4e-06 UniRef50_B2TE45 Histone family protein nucleoid-structuring prot... 52 4e-06 UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n... 52 6e-06 UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n... 52 8e-06 UniRef50_B2JM34 Histone family protein nucleoid-structuring prot... 51 9e-06 UniRef50_A0KCC6 Histone family protein nucleoid-structuring prot... 51 1e-05 UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkhol... 50 2e-05 UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenel... 50 2e-05 UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia a... 50 2e-05 UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkh... 50 3e-05 UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptoth... 48 8e-05 UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2... 47 2e-04 UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia... 46 4e-04 UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodoba... 46 4e-04 UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthom... 45 8e-04 UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkhol... 44 0.002 UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnoba... 43 0.004 UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkh... 43 0.004 UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralston... 41 0.010 UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax... 40 0.021 UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkhol... 40 0.031 UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnific... 39 0.061 UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n... 38 0.082 UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthe... 38 0.084 >UniRef50_Q5E4C0 Global DNA-binding transcriptional dual regulator H-NS n=5 Tax=Gammaproteobacteria RepID=Q5E4C0_VIBF1 Length = 173 Score = 137 bits (346), Expect = 7e-32, Method: Composition-based stats. Identities = 65/134 (48%), Positives = 92/134 (68%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++L N+R+LRA++RE +++ LEE LEK + V ER+E E +++ +LAE+Q K+ Sbjct: 40 MSDTIKTLLNLRSLRALSREMTLEQLEEALEKLQSVVAERQESEAEERAQLAEKQAKLEE 99 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ++M GI PE+LL SA + +KR PRPAKYKF D GE KTWTGQGRTP + Sbjct: 100 FRQMMIDSGIAPEDLLDTMSATTVKTKQKRAPRPAKYKFQDHAGEEKTWTGQGRTPSALQ 159 Query: 121 QALAEGKSLDDFLI 134 L GK L++FLI Sbjct: 160 AQLDAGKKLEEFLI 173 >UniRef50_P0A1S5 DNA-binding protein stpA n=131 Tax=Gammaproteobacteria RepID=STPA_SALTI Length = 133 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 113/134 (84%), Positives = 122/134 (91%), Gaps = 1/134 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M++MLQ+LNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE QQR+LAE+QEKI+ Sbjct: 1 MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINA 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 +LELMKADGINPEEL SA PR+ KKRQPRPAKY+FTD NGE KTWTGQGRTPKPIA Sbjct: 61 FLELMKADGINPEELFAMDSA-MPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIA 119 Query: 121 QALAEGKSLDDFLI 134 QALA GKSLDDFLI Sbjct: 120 QALAAGKSLDDFLI 133 >UniRef50_B2VAY7 Heat-stable nucleoid-structuring protein n=1 Tax=Erwinia tasmaniensis RepID=B2VAY7_ERWT9 Length = 145 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 67/131 (51%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + L+NIR+LRA ARE + L + +EK V ER +E +++QR + E + + Sbjct: 10 VTAVLSNIRSLRAYAREVDFEFLRDAVEKIHSVLAEREDEYKEEQRRKQDEVENLEKVKK 69 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 M G++P L +S + R P KY+ D +G T W+G+G+ P AL Sbjct: 70 YMVELGLDPALLTPSSVSPKRSGKNYRPVVPPKYRIKDTDGNTHEWSGRGKPPAAFKAAL 129 Query: 124 AEGKSLDDFLI 134 G++ DD LI Sbjct: 130 DAGRNKDDLLI 140 >UniRef50_B0UTX9 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Histophilus somni RepID=B0UTX9_HAES2 Length = 134 Score = 117 bits (292), Expect = 1e-25, Method: Composition-based stats. Identities = 59/134 (44%), Positives = 87/134 (64%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +L++L +IR LR +EF++ LE +LEKF+++T ERR+ E+ QR+ ER E+I+ Sbjct: 1 MSDLLKTLTSIRALRVATKEFTLQELESILEKFQLITNERRQLIEENQRKEQERLERIAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + L+ DG+ +L+ + + R KK PR AKY++TD NG+ KTWTGQGR P + Sbjct: 61 YKALLAQDGLTLTDLVDDPTFTTKRPRKKIAPRKAKYQYTDQNGKVKTWTGQGRMPLSLQ 120 Query: 121 QALAEGKSLDDFLI 134 L GK+L DF I Sbjct: 121 AELNTGKTLADFEI 134 >UniRef50_Q65SY1 Hns protein n=2 Tax=Pasteurellaceae RepID=Q65SY1_MANSM Length = 134 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 89/134 (66%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++++LNN+R LR+MA+E SI+ LE ++EKF++V +E++ EE + +R ER+ ++ Sbjct: 1 MNEVIKTLNNLRRLRSMAKELSIEQLENIIEKFQLVIEEKKAEELEIKRLEEERKNRLEK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + EL+K DGI +EL + A KR P AKYK+ + NGE KTWTGQGR PK I Sbjct: 61 YRELLKEDGITADELAQILAGKNNTAKAKRAPLSAKYKYINENGEQKTWTGQGRMPKAIQ 120 Query: 121 QALAEGKSLDDFLI 134 L GKSL DF I Sbjct: 121 LQLNAGKSLSDFAI 134 >UniRef50_Q07ZH5 Histone family protein nucleoid-structuring protein H-NS n=21 Tax=Shewanella RepID=Q07ZH5_SHEFN Length = 136 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L L + R +A +E S+D L E K + ER+EEE+ + AER +I+ Sbjct: 1 MSDFLDILTHGRRFKAAVKELSLDDLRETAAKLEKIITERQEEEKLELEANAERNARIAE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++ G++ E+L G+ +++ A KR PRP KY+ T V+GE WTGQGR P Sbjct: 61 ILAQIENSGLSIEDL-GDVTSSVKTAKTKRAPRPPKYQIT-VDGELIQWTGQGRMPTVFK 118 Query: 121 QALAEGKSLDDFLI 134 Q + GK++ +FLI Sbjct: 119 QQVDSGKNMSEFLI 132 >UniRef50_P43841 DNA-binding protein H-NS homolog n=25 Tax=Gammaproteobacteria RepID=HNS_HAEIN Length = 134 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 62/134 (46%), Positives = 85/134 (63%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + ELM+ +GI PEEL KR PRPAKY F D NGE KTWTGQGRTP+PI Sbjct: 61 YKELMEKEGITPEELHEIFGTKTVSIRAKRAPRPAKYAFIDENGEHKTWTGQGRTPRPIQ 120 Query: 121 QALAEGKSLDDFLI 134 AL +GKSL DF I Sbjct: 121 NALNKGKSLSDFEI 134 >UniRef50_A4SUA6 Histone-like nucleoid structuring protein n=3 Tax=Aeromonas salmonicida subsp. salmonicida RepID=A4SUA6_AERS4 Length = 136 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ L+ L NIR+LRA R+ + L+E+ EKF V +E+ + E Q E Q+K++ Sbjct: 1 MNDFLKVLLNIRSLRAAVRDLPFEQLQEIKEKFDTVVQEQLKAAETDQAAKLEHQKKLAE 60 Query: 61 WLELMKADGINPEELL---GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + EL+ +G++PE+LL G ++ A A KR PRPAKY++ V GE +TWTGQGR P Sbjct: 61 FRELLAIEGLSPEDLLSGRGLTAWADAGAKAKRAPRPAKYRYL-VEGEARTWTGQGRMPA 119 Query: 118 PIAQALAEGKSLDDFLI 134 IA A+A G+SLD FLI Sbjct: 120 QIAAAIASGESLDAFLI 136 >UniRef50_B5EWF6 H-NS histone family n=2 Tax=Enterobacteriaceae RepID=B5EWF6_SALA4 Length = 141 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 87/132 (65%), Gaps = 1/132 (0%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L+NIR+LRA ARE ++L++M +KF V +E RE+ E++ +E +R + L Sbjct: 6 NVRKVLSNIRSLRAFAREVDFELLKDMAQKFNAVVEELREDAEREAKEREQRDARKRELL 65 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 E++ ++G + EEL G S + R + Q PAKY+F +VNGE + WTG+GR PK I +A Sbjct: 66 EMIASEGFSVEELTGASDTGSTRKKRVVQQVPAKYQF-EVNGEMQYWTGRGRKPKAIEEA 124 Query: 123 LAEGKSLDDFLI 134 +A GK LDDFLI Sbjct: 125 IAAGKKLDDFLI 136 >UniRef50_P0ACG0 DNA-binding protein H-NS n=266 Tax=Gammaproteobacteria RepID=HNS_ECO57 Length = 137 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 78/135 (57%), Positives = 93/135 (68%), Gaps = 1/135 (0%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ LNNIRTLRA ARE +++ LEEMLEK VV ERREEE E+ ER K+ Sbjct: 1 MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + E++ ADGI+P ELL + +A KR RPAKY + D NGETKTWTGQGRTP I Sbjct: 61 YREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDENGETKTWTGQGRTPAVIK 120 Query: 121 QALAE-GKSLDDFLI 134 +A+ E GKSLDDFLI Sbjct: 121 KAMDEQGKSLDDFLI 135 >UniRef50_B2VB46 H-NS protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB46_ERWT9 Length = 136 Score = 112 bits (279), Expect = 4e-24, Method: Composition-based stats. Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 2/130 (1%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 Q LN IR +RA ARE +++EE+ EK + + R+E + + + +ER EK+ + E+ Sbjct: 9 FQGLNKIRVMRAAAREMPYEMMEEIREKLNAIVDDLRDEHQARASQESERLEKLEKYREM 68 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 + DGI+P +L + +A R PRPAKY++TD +G KTWTGQGRTP +A ALA Sbjct: 69 LLQDGIDPADLADSELPRKQKAS--RAPRPAKYRYTDTDGSEKTWTGQGRTPLAMANALA 126 Query: 125 EGKSLDDFLI 134 GK ++DFLI Sbjct: 127 AGKKIEDFLI 136 >UniRef50_Q5QW35 Histone-like protein n=2 Tax=Idiomarina RepID=Q5QW35_IDILO Length = 138 Score = 111 bits (277), Expect = 7e-24, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 3/137 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+A +E ++ LE + KF V +RREEE ++QR+ +Q+KI Sbjct: 1 MSEFINILRHERRLKAALKELDLNELESVKSKFDSVISQRREEEAEKQRQNEAKQKKIEE 60 Query: 61 WLELMKADGINPEELLGNSSAA---APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 + M GI ++L KKR P+P KY++TD NGE +TWTGQGR PK Sbjct: 61 FKSAMADAGIELSDILEQELGGEPIVKTTRKKRAPKPPKYEYTDENGEKQTWTGQGRMPK 120 Query: 118 PIAQALAEGKSLDDFLI 134 + A+ GKSL+ FLI Sbjct: 121 AMKTAVDNGKSLEAFLI 137 >UniRef50_A6FD06 DNA-binding protein H-NS n=1 Tax=Moritella sp. PE36 RepID=A6FD06_9GAMM Length = 135 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 3/136 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ ++ N R+LRA +E S++ LEE+L KF + +R+E + + +Q K++ Sbjct: 1 MNDFIKIFLNARSLRAATKELSVEQLEEVLIKFTTIVDDRKEANAAELEKQQAKQAKMNE 60 Query: 61 WLELMKADGINPEELLG--NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 L +K +GI+PEEL+G +S+A + KR PRPAKY + D NGETKTWTGQGR P P Sbjct: 61 ILLQLKENGISPEELMGLTDSTAEKTKNKTKRGPRPAKYAY-DFNGETKTWTGQGRMPLP 119 Query: 119 IAQALAEGKSLDDFLI 134 + + + E S++++LI Sbjct: 120 LQEVMNEKGSIEEYLI 135 >UniRef50_Q2BK75 DNA-binding protein Hns n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK75_9GAMM Length = 130 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L+ L +LR + S+ LE+++ V+T+++R EEE E+ KI + Sbjct: 1 MSDFLKILTRKNSLRKQCHDLSVAELEKVISDLTVITEDKRAEEEAVLAAEQEKAAKIES 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M+ G++ +L+ A K KY+ D G W+G+GRTP Sbjct: 61 IRQSMQDAGVDINDLMSLIGETAAPKKK----VQPKYRIVDDEGNEHEWSGRGRTPLAFQ 116 Query: 121 QALAEGKSLDDFLI 134 +G + DD LI Sbjct: 117 AYFDKGFTKDDCLI 130 >UniRef50_Q15TX2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Alteromonadales RepID=Q15TX2_PSEA6 Length = 133 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS + L + R L+ +E S++ LE + +K + R+ +E +QQ E+ EK++ Sbjct: 1 MSDFISILTHGRRLQGAVKELSVEELETVADKLNSIIDNRKAKELEQQEAAKEKNEKLNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L ++A G++ +L + A ++ K + RP KY D G WTG GR PK Sbjct: 61 ILAQLEAAGLDVNDL--QKAEPAKKSTKVGKKRPVKYILKDSAGNEHKWTGIGRMPKVFK 118 Query: 121 QALAEGKSLDDFL 133 L GKSLD +L Sbjct: 119 AELDNGKSLDSYL 131 >UniRef50_A7JSK3 DNA-binding protein H-NS n=2 Tax=Mannheimia haemolytica RepID=A7JSK3_PASHA Length = 133 Score = 107 bits (268), Expect = 8e-23, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 86/130 (66%) Query: 5 LQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLEL 64 L+SL NIR+LRA+A++ +++ L+ + EK ++ E+ EE +Q++ E ++ E ++ + E+ Sbjct: 4 LKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREM 63 Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 +K DG++ +EL + + K PRPAKYKF D NG KTWTGQGRTPK + AL Sbjct: 64 LKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALD 123 Query: 125 EGKSLDDFLI 134 GK L+DF I Sbjct: 124 SGKKLEDFAI 133 >UniRef50_Q6AQT8 Related to DNA-binding protein H-NS n=1 Tax=Desulfotalea psychrophila RepID=Q6AQT8_DESPS Length = 143 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 4/135 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L++ N+R+L A R+ SI+ LE L+K + ++R+E ++ L + K+ Sbjct: 10 MSSFLKTFLNVRSLNAATRDLSIEQLESTLQKLGKIVEDRKEVVLAGEKLLEAKLAKMKE 69 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + +LM+ DGI+P E S + +K P P KY++ D E KTW+G GRTP+ I Sbjct: 70 FKDLMEEDGIDPFEFAELCSTGNVK--QKNSPLPPKYEYMD-GAELKTWSGYGRTPEVIK 126 Query: 121 QAL-AEGKSLDDFLI 134 A+ EGKS + FLI Sbjct: 127 NAIKNEGKSKESFLI 141 >UniRef50_Q663D4 DNA-binding protein n=1 Tax=Yersinia pseudotuberculosis RepID=Q663D4_YERPS Length = 137 Score = 102 bits (253), Expect = 4e-21, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + + L NIRT+R RE L E EK V +ER+ E E +Q EL +++ K L Sbjct: 7 EVKRILANIRTIRTFVREVDYLFLVEAHEKLGVALEERKAEFECEQEELNKKEAKKKELL 66 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 + ++G EEL GN + R+ KY F + NGE K W+G GR PKPI A Sbjct: 67 AFIASEGFTLEELNGNGITKRKKPPVHRK---PKYTF-EENGEMKVWSGVGRKPKPIEVA 122 Query: 123 LAEGKSLDDFLI 134 L EGK+L DFLI Sbjct: 123 LNEGKTLSDFLI 134 >UniRef50_Q2NQ66 DNA-binding protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NQ66_SODGM Length = 144 Score = 102 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 62/133 (46%), Positives = 91/133 (68%), Gaps = 2/133 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + + L+NIR+ RA ARE + ++L+EM EK V +ERR + E++ E A R+EK Sbjct: 8 GEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEI 67 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 L+L++ +G EELLG+ + + KK PAKY+F + NGETKTWTG+GR PKPIA+ Sbjct: 68 LQLIEGEGFTAEELLGDDVNISKKRSKK-PKAPAKYEFVE-NGETKTWTGKGRKPKPIAE 125 Query: 122 ALAEGKSLDDFLI 134 AL+ G++L++FLI Sbjct: 126 ALSAGRTLEEFLI 138 >UniRef50_UPI0000E0F9F2 DNA-binding protein, H-NS family n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F9F2 Length = 134 Score = 101 bits (251), Expect = 8e-21, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L + R L+ +E S++ L++ EK V ++R E + ++ AE+ +I Sbjct: 1 MSDFTAILLHTRRLQGATKELSLEELKDAQEKLASVVEKRVELQAAEEASKAEKAAQIEA 60 Query: 61 WLELMKADGINPEELLGN-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119 + M A G++ + N ++ + ++ ++ RP KY + V+G WTG GR P Sbjct: 61 IKQQMLAAGLDISDFAPNLETSKSTKSRRRGAKRPIKYSIS-VDGVRTDWTGIGRMPVVF 119 Query: 120 AQALAEGKSLDDFLI 134 ++AL+ GK L+DF + Sbjct: 120 SEALSSGKQLEDFSV 134 >UniRef50_A2UW01 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Shewanella putrefaciens 200 RepID=A2UW01_SHEPU Length = 133 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 ++ L + R +A +E + L E+ EK + ++R+ +E + + + +I Sbjct: 6 ITEFQSILLHARRFKASVKELTTQQLIEVQEKLNAIVEDRKAADEALKEQEQAKLAQIEQ 65 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L++ G++ ++L ++ ++RQP+P KY T V+GE TWTGQGR PKPI Sbjct: 66 LKSLIEEAGLSLDDL------SSTPIKRERQPKPPKYAIT-VDGEQVTWTGQGRMPKPIK 118 Query: 121 QALAEGKSLDDFLI 134 A+ G SL+ FLI Sbjct: 119 AAIDNGASLESFLI 132 >UniRef50_B2TSE7 DNA-binding protein H-NS family n=5 Tax=Enterobacteriaceae RepID=B2TSE7_SHIB3 Length = 154 Score = 98.7 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM +K VV +ERREE E++ E E + K Sbjct: 11 GIISRTMMNIRSLRVFAREVDFEQLLEMQDKLNVVVEERREEAEREAVERQELEAKRQQA 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQP--RPAKYKFTDVNGETKTWTGQGRTPKPI 119 +E + + G++PE LL +A + +K + R AKY+F D NGE + W+G G+ P + Sbjct: 71 IEYIISLGLDPESLLAPVTADTVKTRRKAKGGVRKAKYRFKDENGEIREWSGNGKRPLAL 130 Query: 120 AQALAEGKSLDDFLI 134 + L EG ++DFLI Sbjct: 131 QKLLDEGHFMEDFLI 145 >UniRef50_C9Q4L7 Putative uncharacterized protein n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L7_9VIBR Length = 283 Score = 98.7 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +L+SL++ R + M + S+D + ++ + + E+ E + ++++ Sbjct: 148 MTDILKSLSSPRRAKTMFKNASVDQVNLIINTLQNLRNEKELEAKMAAEIEERERQELEA 207 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + I+ +L + K T G+ + W G G P + Sbjct: 208 LRAQILEKNIDFSKLSALMGENKKPRKNSSKRTSPKPSATYAYGDNEVWDGVGEVPAALQ 267 Query: 121 QALAEGKSLDDF 132 L EG L DF Sbjct: 268 SLLDEGFELSDF 279 >UniRef50_A7FCL2 DNA-binding protein H-NS n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCL2_YERP3 Length = 141 Score = 98.3 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 L+ +NN+R+LRA A+E ID L E EK V +ER +EEE+ ++E +++E + + Sbjct: 4 DTLKLINNLRSLRAFAKELDIDSLREFQEKLNTVIQEREKEEEEAKQEELKKRETLERFR 63 Query: 63 ELMKADGINPEEL--LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + GINPEE+ ++ + R+ R KY++ D NGE + WTGQGR P+PI+ Sbjct: 64 NQITEAGINPEEVANFLTNTKTVNKVKSVRKKRTPKYEYLDSNGEVRQWTGQGRHPQPIS 123 Query: 121 QAL-AEGKSLDDFLI 134 +A+ EGK L+DFLI Sbjct: 124 EAIKNEGKKLEDFLI 138 >UniRef50_B1VJ65 HN-S family DNA-binding protein n=3 Tax=Enterobacteriaceae RepID=B1VJ65_PROMH Length = 171 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + +SL + LR A+ + + LE + + + +E+REE E ++ ELAE +EK + Sbjct: 12 ITSESLTGLTELRKFAKTKNFEWLENLANQLNGIVEEQREEFELRKLELAELEEKRLKAI 71 Query: 63 ELMKADGINPEELLGN--SSAAAPRAGKKRQPRPAKYKFTDVN-GETKTWTGQGRTPKPI 119 + ++ G++PE + + + +K + PAKY+FT G+T TWTG GR K + Sbjct: 72 KYLEELGLDPETIHISVFETTDKKGKKRKSKNTPAKYRFTHPETGKTDTWTGIGRMKKGL 131 Query: 120 AQALAEGKSLDDFLI 134 + G SLD+FLI Sbjct: 132 QLLIDAGHSLDEFLI 146 >UniRef50_C7BHB8 Dna-binding protein h-ns (Histone-like protein hlp-ii) (Protein h1 (Protein b1)) n=2 Tax=Photorhabdus RepID=C7BHB8_PHOAA Length = 148 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 +++ L+ I +LR A+ ++ LE++ + +V +E +E E ++++K Sbjct: 11 NIVSAHLSRITSLRKFAQTKDVEWLEDVYKTLEIVVQESKETFRLMSLEAEQKEQKRLEI 70 Query: 62 LELMKADGINPEELLGNSS----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPK 117 L++++ G+N + + +K + R KY+F + NGE K W+G G+ P Sbjct: 71 LKMIEEIGLNINTINTPITLSDFKPKKSNARKGKTRKPKYQF-NENGEIKYWSGNGKKPL 129 Query: 118 PIAQALAEGKSLDDFLI 134 + + L EG SL++FLI Sbjct: 130 GLQKLLNEGHSLNEFLI 146 >UniRef50_Q70W58 DNA binding protein n=1 Tax=Yersinia enterocolitica RepID=Q70W58_YEREN Length = 147 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 7/132 (5%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L++ R ++ + +L ++ K + E ++E++Q + R EK S L Sbjct: 8 DVYTYLSSGRNMKQFIKRCDYGLLIDLQNKLDIHISEWAAQQEKEQEAIQLRNEKRSELL 67 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L+ ++G +PEEL+ ++ K R R KY++ D G K W+G GR P+ I + Sbjct: 68 ALIVSEGFSPEELITVAAI------KTRSRRRMKYQYRD-GGAIKKWSGVGRVPRSIQER 120 Query: 123 LAEGKSLDDFLI 134 L G +LDDFLI Sbjct: 121 LNSGATLDDFLI 132 >UniRef50_B4TM78 DNA binding protein n=2 Tax=Salmonella enterica subsp. enterica serovar Schwarzengrund RepID=B4TM78_SALSV Length = 130 Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ + L + R L+ RE LE + + E+R E +Q++ +R+EK + Sbjct: 1 MNRIQDELTSERALKKFLRESDFAFLEMLSARISAALDEKRAEHIEQEKLRRQREEKRNE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L L++++G +P EL+ + A K + Y++ + NG K W+G GR P I Sbjct: 61 LLALIESEGFSPTELVSTTPAKKSAKRKAK------YQYFE-NGVHKKWSGVGRVPVVIQ 113 Query: 121 QALAEGKSLDDFLI 134 Q L GK L+ FLI Sbjct: 114 QELDAGKPLESFLI 127 >UniRef50_Q2C8B2 Putative DNA-binding protein H-NS n=2 Tax=Photobacterium RepID=Q2C8B2_9GAMM Length = 130 Score = 89.0 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 M+ L N+R+LRA ARE S+ L+E L+KF V +ERREEEE E++ K+ + + Sbjct: 1 MIDILLNLRSLRAQAREMSVVDLQEGLQKFTQVVEERREEEEAANAVNKEQEAKLQKYRD 60 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQAL 123 +++A+GI EEL+ A K+ KY F+D NGE KTWTGQGRTPK + Q L Sbjct: 61 MLEAEGITAEELVALLGDAPKAKKKRAARPA-KYTFSDENGEEKTWTGQGRTPKALQQLL 119 Query: 124 AEGKSLDDFLI 134 G L +F I Sbjct: 120 DNGAQLSEFEI 130 >UniRef50_Q28U97 Trans-acting regulatory protein hvrA n=2 Tax=Jannaschia sp. CCS1 RepID=Q28U97_JANSC Length = 119 Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 16/122 (13%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 T+ + S++ L+ + E R + ++ + K G + Sbjct: 14 TMAKALEKMSLEELQAHQRDVEATI---------KGYEKKRRADCLAELKAVAKKHGFSL 64 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +E G K AKY + +++TWTG+GR P + +AL+ GKSLD+F Sbjct: 65 DEFTG-----GKSGSKSGPKGVAKY--ANPADKSQTWTGRGRQPNWVKEALSSGKSLDEF 117 Query: 133 LI 134 I Sbjct: 118 AI 119 >UniRef50_Q3J213 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3J213_RHOS4 Length = 131 Score = 85.2 bits (209), Expect = 6e-16, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 14/130 (10%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERRE--EEEQQQRELAERQEKISTWLELMKADGINPEE 74 MA+ + LE++++ R + R EE + E E+Q EL+++ G N + Sbjct: 1 MAKTTGLPTLEDLVDVPRGDLLKLRANVEEALRANEAREKQAAKDKIKELVESSGFNLVD 60 Query: 75 LLGNSSAAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 L G+ + GK+ R+P KY+ + ++TW+G+GR PK + L Sbjct: 61 LFGDMLPKSEGTGKRSYNRKSKDGEREPVAPKYRHPE--NPSETWSGRGRKPKWVEAHLE 118 Query: 125 EGKSLDDFLI 134 G +++D LI Sbjct: 119 AGGNMEDLLI 128 >UniRef50_B1LDK0 H-NS histone family protein n=5 Tax=Enterobacteriaceae RepID=B1LDK0_ECOSM Length = 146 Score = 83.6 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 12/134 (8%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 +S + SL N +R + E S + ++ + ++R E ++ ++ Sbjct: 13 LSTVRTSLLNSNLVRKLIMEMSDEDFNQVKDNLEKAIEQR-----------NELKDSLAI 61 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 + M G+ E++ K KY++ + NG+ W+GQGR P IA Sbjct: 62 IKKYMDDAGVTAEDVYREFGKKLQTGRKNDSGESNKYRY-EYNGQIMYWSGQGRRPSVIA 120 Query: 121 QALAEGKSLDDFLI 134 +A+ G SLDDFLI Sbjct: 121 EAIKAGGSLDDFLI 134 >UniRef50_A6VTC1 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Marinomonas RepID=A6VTC1_MARMS Length = 132 Score = 83.2 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 3/134 (2%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS++L+ N RA A+E S+ LE ++ F ++ +EEE + E A + + Sbjct: 1 MSLLLELAGNKAKARAAAKELSVAQLENLIAGFNNALEKAKEEEAARDAEQALKSARAEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 L+ G+ EE+ K + KY+ T V GET WTG+GRTPK Sbjct: 61 IANLIAKSGLTMEEVA--LLTTPKAGATKGKTVEPKYRLT-VAGETHEWTGRGRTPKVFQ 117 Query: 121 QALAEGKSLDDFLI 134 + G S + I Sbjct: 118 EYFDAGNSRESVEI 131 >UniRef50_Q1QIY6 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QIY6_NITHX Length = 130 Score = 82.1 bits (201), Expect = 5e-15, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + L + EK V E+ E+ E +++++ A ++ E Sbjct: 3 KKDLFSMQFNELWRLHEKITKVLAEKIVAEK------RELEKRLAQLNRSDVASKVDASE 56 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L A +P +K KY+ + ++TW+G+G+TP A AL G+ +DDF I Sbjct: 57 LSPALVAGSPP-RRKYPRVLPKYR--NPLSPSQTWSGRGKTPHWFANALKMGRKIDDFRI 113 >UniRef50_C7RP80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RP80_9PROT Length = 106 Score = 79.0 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 5/102 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQP 92 ++ + E++ ++ E + +L+ G+ + + +AA AGK R P Sbjct: 6 ELLVQRAELEKQIEETRSQEVAAAVVQAKQLIAEYGLTAADCGFKLTPSAAQMAGKTRTP 65 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + +TW+G+G+ P + +A G+ +DFL+ Sbjct: 66 VAVKYRGPN----GETWSGRGKAPNWLTSLVAHGRDKNDFLV 103 >UniRef50_B9Z6W8 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Neisseriaceae RepID=B9Z6W8_9NEIS Length = 101 Score = 78.2 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S L + E E ++RE E+ + +EL +A G++ EE+LG Sbjct: 3 LSNLSFADLLSLKSDL---------ENEIKRREHEEKAKAKKQIVELARAYGLSVEEVLG 53 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G R+P AKY TWTG+GR P + + LA GK+L+D I Sbjct: 54 -------KVGPARKPVEAKYC--HPQNPELTWTGRGRKPLWVQELLAAGKNLEDLAI 101 >UniRef50_B6JG92 H-NS histone family n=4 Tax=Bradyrhizobiaceae RepID=B6JG92_OLICO Length = 125 Score = 76.7 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ID L E+ + ER E+ +EL ER ++ D L Sbjct: 8 LESMPIDDLWSFHERISKILAERITSEK---QELEERLAVLNRGRNAFGGD-------LA 57 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +S + + +K KY+ + ++TW+G+G+ P+ + A+ G+ +DDF I Sbjct: 58 HSLDSNNKVRRKYPRVFPKYR--NPAAPSETWSGRGKQPRWLVAAIKSGRKIDDFRI 112 >UniRef50_B5IYF2 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IYF2_9RHOB Length = 108 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 15/117 (12%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 RE S+ L+++ ++ + R + RQE + + G+ +E++G Sbjct: 7 LRELSLSKLKQLQKEAALAVATRETQL---------RQEARAKLESVAAEYGLGLDEIMG 57 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + P Y+ + +TW+G+GR P + + L G L ++LI Sbjct: 58 APTLNKGG----KMSYPPLYR--NPGDPEQTWSGRGRRPLWLLKLLETGHDLSEYLI 108 >UniRef50_B8KVY0 H-NS histone family protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVY0_9GAMM Length = 137 Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 + + R A++ S+ L+ + ++ E +++ RE R + Sbjct: 2 LSAIAKSKTAARNAAKDLSLVELKSAIANLTAAA--KQIEVKEKTREDKRRAADLKKLQS 59 Query: 64 LMKADGINPEELLGNSSAAAP--------RAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 +MK G+ E + + KR P P KY+ T V GET WTG+GRT Sbjct: 60 MMKKLGVTASEAAELAGKKRKVATRKKSGKRSGKRGPVPPKYEIT-VAGETHQWTGRGRT 118 Query: 116 PKPIAQALAEGKSLDDFLI 134 P + + G LD LI Sbjct: 119 PIVFREFMENGGDLDSCLI 137 >UniRef50_C4AUA6 H-NS histone family protein n=4 Tax=pseudomallei group RepID=C4AUA6_BURMA Length = 271 Score = 75.5 bits (184), Expect = 4e-13, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G + Sbjct: 171 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFG-ARRGRRGQ 229 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 230 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 269 >UniRef50_A9M4Q2 DNA-binding protein n=1 Tax=Vibrio sp. 23023 RepID=A9M4Q2_9VIBR Length = 135 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 7/136 (5%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L R +A+ + +I+ L+ +L + E+ E ++Q + ++ + Sbjct: 1 MTDIIKQLTQPRRAKALFKHTNIEQLDRILNIITEIKIEKEHEAQKQAEHEQQERQALEE 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRP---AKYKFTDVNGETKTWTGQGRTPK 117 E + G++ ++L+ +K Y++ G+ KTW G+G P+ Sbjct: 61 MREEILNKGLDFDKLVSLMKPQRKAKKRKSTGTKDTQKTYRY----GDNKTWNGEGNVPE 116 Query: 118 PIAQALAEGKSLDDFL 133 + + L EG L DFL Sbjct: 117 EMQKMLDEGLELADFL 132 >UniRef50_A1VWC2 Nucleoid protein H-NS n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWC2_POLNA Length = 114 Score = 75.2 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAA 82 L++ +++ + KE R++ +++++ ER + +++ EL+K G+ +L G S+A Sbjct: 6 TLQQQIQEAEAIVKELRKQLDEERKG--ERMQAVASAKELIKTHGLTAADLGFSGKGSSA 63 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AG KR AKY+ + KTWTG+G++P +A LA G + DDFLI Sbjct: 64 KRPAGDKRGVVAAKYQDHESG---KTWTGRGKSPAWLAAQLAAGYTKDDFLI 112 >UniRef50_C8N836 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N836_9GAMM Length = 102 Score = 75.2 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L ++ E +Q++ R + + SS Sbjct: 1 MSLEDLFNQVDNLNNDDFEALINHVDKQKKRRARDILAEAQRQASR----------FISS 50 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + +R P +Y+ + + ++TW+G GR P+ + L G S D LI Sbjct: 51 AEGGKPATQRTAMPPRYR--NPHNHSQTWSGMGRQPQWFKENLEHGMSEHDMLI 102 >UniRef50_A1WU67 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WU67_HALHL Length = 124 Score = 74.8 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%) Query: 11 IRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGI 70 + T+R A E L++ R E+EQ++RE R++ ++ + G+ Sbjct: 8 LETIRQAAEELDFVDLQK---------ASRMIEKEQKRREKEARKQAQQEMKQVAQKYGL 58 Query: 71 NPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE-GKSL 129 + +E++ S A K P K++ + +TWTG+GR PK + E G+ + Sbjct: 59 DLDEIVSGVSKGAGAKATKGNKVPPKFRHPE--DPDRTWTGRGRKPKWVVHWEEELGRDI 116 Query: 130 DDFLI 134 ++ I Sbjct: 117 EELRI 121 >UniRef50_B0RVJ3 DNA-binding protein n=20 Tax=Xanthomonadaceae RepID=B0RVJ3_XANCB Length = 155 Score = 74.8 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 14/125 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ ++ + K ++++ + A + + KA G + EEL G ++ Sbjct: 1 MSIDLTGLSAKQLGALIKNAKKQQTVVAKR-APIAKVRTQLTRAAKAQGYSIEELFGAAA 59 Query: 81 -----------AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 PRAG+K KY+ + +TWTG+G+ P+ +A+ A GK + Sbjct: 60 SAGPGRPAAAGKPGPRAGRKLGKVAPKYR--NPANAQETWTGRGKQPRWLAELTAAGKKV 117 Query: 130 DDFLI 134 +DFLI Sbjct: 118 EDFLI 122 >UniRef50_B7I346 DNA-binding protein H-NS n=18 Tax=Acinetobacter RepID=B7I346_ACIB5 Length = 108 Score = 74.8 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 13/121 (10%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ E S++ L+ + E+ + ++++ ++ + +E+ + G + E Sbjct: 1 MKPDISELSVEELKRLQEEAEALIASKKDQA---------IEDAYNQIIEIAENVGFSVE 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +LL + + +K + ++ + N +TWTG+G+ P+ + + +G L+DFL Sbjct: 52 QLLEFGAQKRKKTTRKS----VEPRYRNKNNAEETWTGRGKQPRWLVAEIEKGAKLEDFL 107 Query: 134 I 134 I Sbjct: 108 I 108 >UniRef50_Q5NWF8 Predicted histone-like nucleoid-structuring protein n=2 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWF8_AZOSE Length = 127 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 41 REEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY--- 97 R ++E +R+ A + + +L + G++ +E++ + A PR + + PAK Sbjct: 17 RIDKEIGKRQSASKAVVLRKLQKLAREHGLSLDEVMASPVFATPRKARSKTAAPAKAPLP 76 Query: 98 -KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KF N W+G+GR P + LA G SLD + Sbjct: 77 VKFRHPNNRELAWSGRGRKPHWVEAWLANGGSLDALAV 114 >UniRef50_Q8VTF2 LEE encoded regulator n=28 Tax=Enterobacteriaceae RepID=Q8VTF2_ECOLX Length = 129 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +++ + ++E ++ E Q I + + I +EL + A + Sbjct: 20 IQLIEQIEVLQQEAKRLPEQEIQSVIESIQKQTTYYNITLQELGYTNVPDDGLARRNSSK 79 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R Y+ N E +TW+G GR P+ + +AL G +DFL+ Sbjct: 80 R-VYYR----NEEGQTWSGVGRQPRWLKEALLNGMKKEDFLV 116 >UniRef50_B9NXM2 Trans-acting regulatory protein HvrA n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NXM2_9RHOB Length = 107 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 11/116 (9%) Query: 20 EFSIDVLEEM-LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 ID L L+K ++R E E++ L + + G+ E+++ Sbjct: 2 SIDIDSLNAADLKKLASKIEKRIVEVEKESLHL-----ALKEMRAVADKLGVAFEDVIAL 56 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K K+ + + ++TWTG+GR P + AL GKS+DD I Sbjct: 57 HKGKGRKPSTKATA-----KYANPDDPSQTWTGRGRKPAWVNAALEAGKSIDDLAI 107 >UniRef50_A3V571 DNA-binding protein, H-NS family n=4 Tax=Rhodobacteraceae RepID=A3V571_9RHOB Length = 119 Score = 74.0 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 13/122 (10%) Query: 13 TLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINP 72 ++ + LE + +R+ E+ +R+ ++ + G + Sbjct: 11 SMNKDLSSMTRSELETL---------KRQVEKAMVDVAEKDRKAALAAAEKAAADHGFSL 61 Query: 73 EELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 E+ G + K PAKY+ + ++TWTG+GR P AL+ G S + Sbjct: 62 AEITGMAPRKGKTGPK--SSAPAKYR--NPTDISQTWTGKGRQPAWFKDALSNGTSPEAM 117 Query: 133 LI 134 I Sbjct: 118 EI 119 >UniRef50_C5CUL7 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Variovorax paradoxus S110 RepID=C5CUL7_VARPS Length = 114 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 5/114 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ + ++K+ + R++ + ER I + G+ +L ++ Sbjct: 4 TLADINSQIKKYDEQIAQLRKQ--AEDLRNQERAGVIEDVRRKIAEYGLTASDLKLSARG 61 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWT-GQGRTPKPIAQALAEGKSLDDFLI 134 + + A K+ GE TW+ G+GR P+ + +ALA GKSL +F I Sbjct: 62 GSVKRSAGVPAVKAAAKYRGPTGE--TWSGGRGRKPRWVTEALAAGKSLSEFEI 113 >UniRef50_A1B6U3 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Rhodobacteraceae RepID=A1B6U3_PARDP Length = 105 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S+ L+++ + + + + R AE K G + EL + Sbjct: 9 LSLAELKQLEKNLTKAIASFEDRRKAEARAAAEAVA---------KEHGFSLGELAEMT- 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KR KY+ + TW+G+GR P IA AL GKSL+DF I Sbjct: 59 -----PAQKRAAVAPKYRHPE--NPEITWSGRGRKPAWIAGALEAGKSLEDFAI 105 >UniRef50_Q84IJ5 DNA-binding protein n=1 Tax=Janthinobacterium sp. J3 RepID=Q84IJ5_9BURK Length = 109 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + E E + R+ + Q+ L + + G++ EELL + + + + + Sbjct: 18 QHDIEREIKSRQHQDLQKAREQILAIAQEAGVSVEELLAAGGKKSK----TGKGQKVQAR 73 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + + ++TWTG+GR PK IA+ LA+GK+LDDF I Sbjct: 74 YQNPSDNSQTWTGRGRQPKWIAEGLAKGKALDDFRI 109 >UniRef50_A4X023 Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4X023_RHOS5 Length = 132 Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S + LE + + E + + + + G EL G Sbjct: 36 LETLSREELEALQAEVAAAIATL---------ERQRKAQAQAELARRARELGFTLRELTG 86 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S A P + ++ + +TW G+GR P+ +A+A G++ +D LI Sbjct: 87 TSELA-----------PWELRYANPANVNQTWCGRGRKPRWFEKAMAAGRTPEDMLI 132 >UniRef50_A4NZJ0 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NZJ0_HAEIN Length = 100 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 52/96 (54%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 + ELM+ +GI PEEL K P K Sbjct: 61 YKELMEKEGITPEELHEIFGTKNCINSSKTCSTPCK 96 >UniRef50_Q13SX0 HNS-like transcriptional regulator n=24 Tax=Burkholderiales RepID=Q13SX0_BURXL Length = 100 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + + ++ E I+ + + G+ ++L +A R K Sbjct: 1 MSQYADLKAQIAKLQAQAEEARRTEIDNVIADIRQKIAEYGLTAQDLGFAVAAKRGRPPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K P PAKY+ TW+G+G+ PK I GK+ + FLI Sbjct: 61 K-APLPAKYQDPKSGN---TWSGRGKPPKWIV-----GKNRERFLI 97 >UniRef50_Q606Z8 Putative regulator protein n=1 Tax=Methylococcus capsulatus RepID=Q606Z8_METCA Length = 112 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 4/114 (3%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S D ++ + + + +++ +ER+E + EL G+ + + S Sbjct: 1 MSHDFSGYTAQELQSLID--AATKALKEKLESERREYLRQMNELASKAGVRFQIIEDLSK 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ PAKY+ + + + W+G+G P+ + LA+G+ + +F I Sbjct: 59 GGGAPSTRRGAKVPAKYQ--NPHNPAEKWSGRGVKPRWLQAFLAQGRDIKEFEI 110 >UniRef50_A2SFJ3 Nucleoid protein H-NS n=3 Tax=Burkholderiales Genera incertae sedis RepID=A2SFJ3_METPP Length = 115 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M +K + + E+ + AE I+ LM GI +L + S P Sbjct: 8 MSQKAALERQAAALTEQIETARRAEHSAVIARIKALMDEHGITLADLGRSKSPVKPAKAA 67 Query: 89 K-----RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K + KY+ T TW+G+G P + ALA G+ +++F + Sbjct: 68 KTGGTAGRKVAVKYRNTATGD---TWSGRGLQPNWLKAALASGRKIEEFSV 115 >UniRef50_Q47D23 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D23_DECAR Length = 105 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 14/117 (11%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ L ++ ++ E ++RE E+ ++ K G EELLG Sbjct: 3 LSTLTVSQLRDLQQQIPA---------EIKRREAQEKVNVLNELRAFAKTRGYAIEELLG 53 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + G K K K+ WTG+GR PK + +A G +L+ L+ Sbjct: 54 KEAKVKAATGNK-----VKVKYRHPQNPELEWTGRGRKPKWVEAWVANGATLESLLV 105 >UniRef50_Q1GMN5 Histone-like nucleoid-structuring protein H-NS n=11 Tax=Rhodobacterales RepID=Q1GMN5_SILST Length = 106 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SID+ + + + K+ E+ + EL ER E + + G + +E+L + Sbjct: 1 MSIDLNKMSRKDLLQLRKD--VEKALKDAELRERTEALKAAEQAAAEYGFSLDEVLSGPA 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R K KY+ + +TWTG+GR P + AL+ G + D I Sbjct: 59 KGAARKSKAS----PKYR--NPENPDETWTGRGRKPHWVHTALSNGVDISDLEI 106 >UniRef50_B5J712 H-NS histone family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J712_9RHOB Length = 113 Score = 72.1 bits (175), Expect = 5e-12, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ + E+ + ++ KA G Sbjct: 1 MKTDLKYMSRKELEKLSADIDKAMAKL---------ANREKALAVVAVEKIAKAHGFTLA 51 Query: 74 ELLGNSSA-AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 EL + + +K+Q + + KF +++ KTWTG+GR P QALA GK+ D+ Sbjct: 52 ELGDSKPSVKLASKPRKKQKQASAPKFVNLDDNAKTWTGKGRQPDWFKQALAAGKTPDEM 111 Query: 133 LI 134 I Sbjct: 112 AI 113 >UniRef50_Q136M2 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q136M2_RHOPS Length = 139 Score = 72.1 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L E+ E+ V + + E+++ R L L G N + + Sbjct: 26 MTVDELWEIHERISQVLCSKIQSEQRKLDGHLSR-------LRLGVTSGANQQ---SDDE 75 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A + KY+ + TW G+G+ P + L GKS+DDFLI Sbjct: 76 SGPKPARRPYPKVYPKYRSLK--DPSLTWAGRGKQPLWLIDELKSGKSIDDFLI 127 >UniRef50_Q3IVA3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Rhodobacter sphaeroides RepID=Q3IVA3_RHOS4 Length = 105 Score = 72.1 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 SI L+ + + E R+E +S E + G + EL G + Sbjct: 9 LSIKELKNLQTQVAKAISTF---------EERRRKEALSELEEKARELGFSLSELTGTAL 59 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 RQ A K+ + + +TW+G+GR P +ALA GK+ +D I Sbjct: 60 T--------RQRAGAAPKYANPDQPEQTWSGRGRKPHWFVEALAAGKTAEDLQI 105 >UniRef50_Q3JI76 H-NS histone family protein n=107 Tax=Burkholderiaceae RepID=Q3JI76_BURP1 Length = 173 Score = 71.7 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E M + K + ++ +E + + + G+ PE++ G + Sbjct: 73 ENMSTYLELKAKADEILRQAEEARRSELETVLKEVRTRVAEYGLTPEQVFG-ARRGRRGQ 131 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY+ TW+G+GR P I GK + FLI Sbjct: 132 QVHASPTVPKYRDPKTGA---TWSGRGREPGWIK-----GKKRERFLI 171 >UniRef50_Q0VT26 DNA-binding protein H-NS n=2 Tax=Alcanivorax RepID=Q0VT26_ALCBS Length = 118 Score = 71.7 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+D LE+++++ ++R+ E + + + E+ K G+ P++LL +S Sbjct: 7 QLSVDELEKLIKQAESALDKKRKAELKNAQAVLEKMAK---------NLGVAPQDLLKSS 57 Query: 80 SAAAPRAGKKRQP------RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + K RPAK KF D N TWTG+G+ P + AL++G L+DF Sbjct: 58 TEKKKTTRKNAAKKKTGVRRPAKVKFRDPNNSGNTWTGRGKRPLWLQDALSKGAKLEDFA 117 Query: 134 I 134 + Sbjct: 118 V 118 >UniRef50_A6D5D9 DNA-binding protein H-NS n=1 Tax=Vibrio shilonii AK1 RepID=A6D5D9_9VIBR Length = 151 Score = 71.3 bits (173), Expect = 8e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + L+N R ++ + +E ++ K +ER++EE+ Q+ L Q I L Sbjct: 10 ELSSILSNKRKTASVLGRIELAKIETVIAKLSTYHQERKDEEKAQREALENTQSAIEEVL 69 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKT------WTGQGRTP 116 +L + P KK+ D E + W G G P Sbjct: 70 SKTGLSWDEVSKLAETQVSKKPVRHKKKSSNAVNATSNDSQNEARYKDGECEWDGTGEQP 129 Query: 117 KPIAQALAEGKSLDDFLI 134 K I + L G L +F + Sbjct: 130 KWIKERLEMGFELKEFEV 147 >UniRef50_D1UME5 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UME5_9BURK Length = 108 Score = 71.3 bits (173), Expect = 8e-12, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 ++ L+ E + + + + ++AE+ + I+ M A I +EL G + Sbjct: 3 DLETLKAQREILQAQLAD--IDNTIRVHQVAEKVQMIAAIRLKMAAYNITLDELRGEPTK 60 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 A K + P +Y+ + TW+G+GR PK I + Sbjct: 61 PRHAAAKGKGTVPVRYRNPETGD---TWSGRGRRPKWITASAD 100 >UniRef50_A1WX44 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX44_HALHL Length = 115 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 E+R +E+++R+ + +E + GI EE L + + + + P KY+ Sbjct: 23 EKRVAKERKRRDRSRIEEAEREIRLVAAKYGIKLEEALSDLNGRTGPSRR---RVPPKYR 79 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GRTP+ I + +G S ++ I Sbjct: 80 HPH--DPDTTWSGRGRTPRWIQEWEQQGGSREELRI 113 >UniRef50_A9AS00 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Burkholderiaceae RepID=A9AS00_BURM1 Length = 128 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 10/85 (11%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 +AE + I+T E + GI PE+L G A R P KY+ TW Sbjct: 52 RIAELESIIATIREQIAEYGITPEQLFG---RRRAPASGTRAPVAPKYRDPKTGA---TW 105 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 +G+G+ P IA A K+ D FLI Sbjct: 106 SGRGKAPHWIANA----KNRDRFLI 126 >UniRef50_B5S5D9 Histone-like nucleoid-structuring protein h-ns; n=5 Tax=Ralstonia RepID=B5S5D9_RALSO Length = 83 Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 9/91 (9%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 ++ Q+ +R+ I + M+ G+ E+L AP PA + + N Sbjct: 1 MKEGQQPDPDREAAIDWIHDQMETYGLTVEDLRALGCFDAPPK-------PAAPVYMNAN 53 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G + W G G P + +A+ G+S++ F + Sbjct: 54 G--QVWDGTGPMPDWLQRAVNAGQSIEHFRV 82 >UniRef50_Q3IVA4 DNA-binding protein, H-NS family n=10 Tax=Rhodobacterales RepID=Q3IVA4_RHOS4 Length = 104 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 18/117 (15%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 ++ S++ L+E+ + +E +QE + + G N EEL Sbjct: 6 LKDLSLEELKELRVEIAQAIT---------AQERHCKQEALEQLQAKARQLGFNLEELA- 55 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +R A ++ + + W G+GR P+ QA+A GKS ++ I Sbjct: 56 --------PAMQRGQVGAMLRYANPANPGEVWRGRGRKPRWFTQAMAAGKSPEELQI 104 >UniRef50_A3U3K4 HNS family histone-like protein n=2 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3K4_9RHOB Length = 109 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + L+ + + K E +++ ++ G + +L G+ Sbjct: 8 SMDLSELKSLRKDVDAAIKTF---------EDRKKKAALAELEAKAAEMGFSLNDLTGS- 57 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 G+ R+ P KY+ + + TW+G+GR P + +++G + +D LI Sbjct: 58 -----GGGRGRKVNPPKYRHPE--NDALTWSGRGRQPDWYKEQVSKGTAPEDLLI 105 >UniRef50_Q3JY88 H-NS histone family protein n=47 Tax=Betaproteobacteria RepID=Q3JY88_BURP1 Length = 125 Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E +S + + G EL G A +AG+ R Sbjct: 34 DLLAQREKLEKQIEEAKSREYAEVLSDVKQKIADYGFTLAEL-GLGRGKAGKAGRPRAGV 92 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ + TW+G+G+ P+ I GK+ + F I Sbjct: 93 AAKYRDPESGA---TWSGRGKPPRWI-----AGKNREQFAI 125 >UniRef50_Q2SV21 DNA-binding protein BprA n=4 Tax=Burkholderia RepID=Q2SV21_BURTA Length = 111 Score = 69.8 bits (169), Expect = 2e-11, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 15/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 E + + +E+ + + V E + E + I + + GI+ E++ G + Sbjct: 3 ELNPETFQELRARLKSV------AEAAEIARKREAADAIKVIRKTVLQYGISAEDIFGRA 56 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + R P KY + TW+G+GR P+ I G++ D FLI Sbjct: 57 RPNGGRGKR-RGPAAPKYCNPETGA---TWSGRGRPPQWI-----AGRNRDRFLI 102 >UniRef50_A3SJ27 DNA-binding protein, H-NS family protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ27_9RHOB Length = 104 Score = 69.8 bits (169), Expect = 2e-11, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 16/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 + S+ L+EM ++ E+ ++++ ER+E ++ + G EL+ Sbjct: 6 KMSVAELQEMRKEID---------EQIARKKVEEREEVLAEMKAMAAKRGFEFSELV--- 53 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K + P KY+ + ++TW+G+GR P I A+ +G ++DF I Sbjct: 54 --SGKSKAKAKDKLPPKYR--NPKDASQTWSGRGRKPNWIQDAVKKGAKIEDFAI 104 >UniRef50_Q21SM3 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Comamonadaceae RepID=Q21SM3_RHOFD Length = 123 Score = 69.8 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS +++ + I L+ A + + ++ + + ++L + + + Sbjct: 1 MSDLIEIQSQIEKLQKQASDIKAREFGKTVQDILA----KMQAFGITLKDLQPGKARGAK 56 Query: 61 WLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 G G A K P AKY+ + G W+G+G TP+ + Sbjct: 57 GKAKATKVG-----KAGAGVKPAGAPKKVALPVAAKYRGPNGEG----WSGRGLTPRWLT 107 Query: 121 QALAEGKSLDDFLI 134 L +GK+ +DF I Sbjct: 108 ALLVDGKTKEDFAI 121 >UniRef50_Q5NZI5 HNS-like transcription regulator protein n=11 Tax=Betaproteobacteria RepID=Q5NZI5_AZOSE Length = 112 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQP 92 ++ + +++ ++ AE I+ + + ++ +L G + A KR Sbjct: 6 EILAQIEALKQQAEEMRQAEIAGVIADIRQKISDYNLSAADLGFGAPARGEKPAAGKRGT 65 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ W+G+G PK + L GK+ + FLI Sbjct: 66 VKAKYRNPAAGAS---WSGRGVMPKWLKAELEAGKAKEAFLI 104 >UniRef50_B2SWM9 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2SWM9_BURPP Length = 100 Score = 69.0 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ ++ + E E ++ + M GI+ EL G +A +A + R Sbjct: 6 ELLAQREKLEKQIEEAKSREYAEVLNEIKQKMTDYGISLSELGGGRAAKGAKAARPRAGV 65 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ D TW+G+G+ P+ I G + FLI Sbjct: 66 APKYRDPDSG---STWSGRGKPPRWI-----AGLDREKFLI 98 >UniRef50_Q1Q9B9 Nucleoid protein H-NS n=2 Tax=Psychrobacter RepID=Q1Q9B9_PSYCK Length = 121 Score = 69.0 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 18/115 (15%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 ++D L + E + + Q++ + + + ++ + + EE+L Sbjct: 25 SLNVDELRAITENAQQLIA---------QKQHQRLYDAYTQFEKIAEESNASIEEILQAG 75 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K + + + + +TWTG+GR P + +ALA G+ L+DF I Sbjct: 76 EKLEKKRSIK---------YRNTDNDEETWTGRGRKPTWLVEALAAGRRLEDFAI 121 >UniRef50_Q3JFR1 H-NS histone family protein n=33 Tax=Burkholderiales RepID=Q3JFR1_BURP1 Length = 131 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 13/120 (10%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 R A E +++ ++ + +++ ++ E + + + + G++ ++ Sbjct: 24 RKEAVESYGEMVMATYKELLAQLDDLKQQ--AKRARALELPDVLVGLRKKIVEYGLSQKD 81 Query: 75 LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 L R K +Y+ D TWTG+GR P I G+ + F I Sbjct: 82 LF---PPRLGRPKKADALPKPRYRDPDTGA---TWTGRGRAPAWI-----AGQDRERFRI 130 >UniRef50_B3EGE6 Putative uncharacterized protein n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGE6_CHLL2 Length = 125 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 12/117 (10%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAE-----RQEKISTWLELMKADGINPEELLG 77 L ++ F E +E+ QR++ E +++ I M I +EL Sbjct: 15 YQYLSIIIMNFMSTITELQEQLVAIQRQIDEQRALGKKQAIGEIKAKMAEFDITVDEL-- 72 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 S + R ++++P KY+ +D +TW G+G P + A G + D+L+ Sbjct: 73 -ESKGSSRGFREKKPSVIKYRKSD----AETWVGRGPKPVWVKDVEAAGGKISDYLV 124 >UniRef50_C6QA05 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QA05_9RHIZ Length = 115 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + R ++ ER E +L + G + EL G A GK + AKY Sbjct: 24 DGRVKKALAMARDRERMEIKKRVADLAETHGFSVAELFG--GARGRGPGKTKSVGVAKY- 80 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + TWTG+GR P + + L +G L DF I Sbjct: 81 -ANPENKLDTWTGRGRKPNWVVERLRKGAKLADFEI 115 >UniRef50_C9Y8W0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8W0_9BURK Length = 100 Score = 68.2 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + ++ ++ E + + E + I L+ + E++ G+SS K Sbjct: 1 MSKLLDLIAQKETLEAQIAEIREKEFAKAIEDVKALVSQYKLTAEDVFGSSSRGQKAVPK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ +TW+G+G PK + GK D+ I Sbjct: 61 TSTKVAAKYRDPLTG---RTWSGRGLAPKWL-----AGKDKADYAI 98 >UniRef50_A6GS13 Predicted histone-like nucleoid-structuring protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GS13_9BURK Length = 109 Score = 67.8 bits (164), Expect = 9e-11, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 37 TKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAK 96 ++ + + E++ + + + + I +L + G+ EEL + P+ ++ P P Sbjct: 14 LQQLKSDIEKELNDRSSKLQAIEEVKKLAASKGLKLEELFAELGGSKPKGKRELGPAPV- 72 Query: 97 YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +F + TW+G+G+ P + +A+A+G + D + Sbjct: 73 -RFRHPQDASLTWSGRGKRPNWMKEAMAKGMTEDQMRV 109 >UniRef50_Q472Y8 Putative DNA-binding protein H-NS n=1 Tax=Ralstonia eutropha JMP134 RepID=Q472Y8_RALEJ Length = 122 Score = 67.8 bits (164), Expect = 9e-11, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 9/90 (10%) Query: 50 ELAERQEKISTWLELMKADGINPEEL-----LGNSSAAAPRAGKKRQPRPAKYKFTDVNG 104 ER + I M G+ EEL + P Y+ N Sbjct: 3 AKTERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPSPEPPPPSAPPAPVVCYR----NA 58 Query: 105 ETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E TW GQG P + +A+ G+SL+ + + Sbjct: 59 EGLTWDGQGEMPSWLKRAVNAGQSLEFYRV 88 >UniRef50_A3VE67 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Rhodobacterales RepID=A3VE67_9RHOB Length = 114 Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%) Query: 14 LRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPE 73 ++ + S LE++ ++ +EE++ + AE+ K + G + + Sbjct: 1 MKFNLKGMSRKELEKLKADVEKALEKVGDEEKRAALQAAEKAAK---------SFGYSLD 51 Query: 74 ELLGNSSAAAPRAGKKRQPRPAK--YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 EL K AK K+ + + TWTG+GR PK + L +G +L+ Sbjct: 52 ELSDVKPVKRAPKAAKSSDGRAKVAPKYRNPDDANMTWTGRGRKPKWVEAHLEKGGTLEQ 111 Query: 132 FLI 134 I Sbjct: 112 IAI 114 >UniRef50_P42505 Trans-acting regulatory protein hvrA n=4 Tax=Rhodobacteraceae RepID=HVRA_RHOCA Length = 102 Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 17/114 (14%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S++ L+ + K E +++E + E+ + G E+L Sbjct: 6 LSLNELKALRSKVDRAI---------VTYEERKKKEAFAELDEIARKMGYPLAEILTMVE 56 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + K+ + ++TWTG+GR PK + ALA GKSL+D I Sbjct: 57 TKPRKT--------VAAKYANPANPSETWTGRGRKPKWVEAALASGKSLEDLTI 102 >UniRef50_Q2T3P5 H-NS histone family protein n=4 Tax=pseudomallei group RepID=Q2T3P5_BURTA Length = 99 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 46 QQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGE 105 + E I+ + GI P E+ G S+ R+ R P KY+ Sbjct: 17 AEAMRREEASAVIAKLRAAILEFGITPAEVFGASAKQIRRSP--RSPATQKYRDPLSGA- 73 Query: 106 TKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G++ DDFLI Sbjct: 74 --TWSGRGRAPRWIV-----GRNRDDFLI 95 >UniRef50_A9IZ20 Trans-acting regulatory protein n=12 Tax=Proteobacteria RepID=A9IZ20_BART1 Length = 95 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 26/117 (22%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + + D L+EM + E ++R+ E+Q LE+ GI+ +L+ Sbjct: 4 LKNMNFDELQEMRIQID---------MELKKRQAKEKQNARRKILEIANTHGIDIADLVS 54 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + N + + W G+GR PK I + L G +LD+ + Sbjct: 55 KER-----------------HYRNPNNQWELWNGRGRRPKWIKEWLENGYTLDELEV 94 >UniRef50_A3X1Q3 Regulator protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X1Q3_9BRAD Length = 121 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 15/114 (13%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++D L ++ E+ V R E+ REL +R ++ ++ + Sbjct: 19 MTVDELWQLHEEIGRVLSVRLTSEK---RELEKRLAQLRGEKGASRS----------GAE 65 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A R +K AKY+ + N +TW+G+G+ P+ +A L G+S+D+F+I Sbjct: 66 TDAARERRKYPRVVAKYQ--NPNEPMETWSGRGKVPRWLAAELKSGRSIDEFVI 117 >UniRef50_Q0A759 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Ectothiorhodospiraceae RepID=Q0A759_ALHEH Length = 105 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%) Query: 42 EEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTD 101 + E +QR + +E + + G EL+GN+ A+ + K AK + Sbjct: 18 IDREIRQRRKQQAKEAQRELKAVAEKYGFALNELVGNAQPASGQKAK------AKAIYRH 71 Query: 102 VNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KTW+G+GR P+ I + +G+ +D+ + Sbjct: 72 PEDPSKTWSGRGRRPRWINEWEQKGRDIDELRV 104 >UniRef50_D1UM70 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UM70_9BURK Length = 283 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 16/114 (14%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP 84 LE + K + + + + + I+ ++M G+ ++ + Sbjct: 3 TLENLQAKIA------KLQAQAEAIVKKDSTAVIAKIRDIMDKHGLTVADIDAHIGGGKK 56 Query: 85 RAGK-------KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 R K K KY+ TWTG GR P IA A K L D Sbjct: 57 RGRKPGVKTVAKSSASTVKYRDPKTGA---TWTGHGRAPVWIANAKDRTKYLVD 107 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R P+PA Y TW+G+GR P IA A K FLI Sbjct: 129 RGPQPALYADPKTGA---TWSGRGRAPAWIASA----KDRTKFLI 166 >UniRef50_D0KM80 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KM80_PECWW Length = 107 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQ 91 + + + Q + + +E+I E + L + + + + Sbjct: 6 QALSAAELKNLIASAQDQLVKGERERIKAVREKILQLLEGENLELEQVFPNSKPSPRVKN 65 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 P KY + + TW+G+G+ P +ALA GK+ + L Sbjct: 66 PVAPKY--AHPDNPSLTWSGRGKQPNWFKEALAAGKTQEQLL 105 >UniRef50_A8LSF2 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LSF2_DINSH Length = 105 Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 9/114 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ID+ +E + E+ + + E E K G+ E++L + Sbjct: 1 MGIDLSNMSMEDLTAL--EKDIAKAKATLEKKRIAEARKAMEMAAKEYGMTVEDVLSSGP 58 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K Q AKY + +TWTG+GR P +A+A G I Sbjct: 59 D-----RKSGQKGVAKY--ANPANPDQTWTGRGRQPTWYREAIAAGTDPASMEI 105 >UniRef50_A1TLA4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=cellular organisms RepID=A1TLA4_ACIAC Length = 99 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 11/101 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E++ + E + I+ L+ G+ E++ + R+ Sbjct: 10 ELLKQREQLEQQINEARRRELSDAIAQVRSLVSEYGLKAEDVF---PSGRARSASAGTKV 66 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ +TWTG+G+ PK I G++ + F I Sbjct: 67 APKYRNPATG---QTWTGRGKAPKWIQ-----GENREQFAI 99 >UniRef50_A2SNQ2 Nucleoid protein H-NS n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNQ2_METPP Length = 114 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 9/104 (8%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 + + ++E + E Q ++ E ++ + +L A + + P K Sbjct: 12 QIAKLQQEAEAIRQREIQGVVARIREAIEHYQLTASDLGFGGPKRGRGAARSKVPVKGKA 71 Query: 98 -------KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +F D NG + WTG GR PK A+A G + + + Sbjct: 72 KPAVGRVRFRDANGNS--WTGHGRRPKWFVDAIAAGATPESLSV 113 >UniRef50_A4JS72 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JS72_BURVG Length = 112 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 13/102 (12%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + AER+ I LMK ++ +L + KR Sbjct: 17 LALIAQRESLDAQIIAARKAEREVAIGQIKALMKEFDLSVLDL----QERVQKRNSKRMS 72 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ KTW+G+GR P + G FLI Sbjct: 73 TVPKYRDPATG---KTWSGRGRQPAWL------GNDPAAFLI 105 >UniRef50_UPI00016A8021 histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8021 Length = 112 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 13/118 (11%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + + + + + KE R+ ++Q E+ I EL+ G++P EL + Sbjct: 2 TTSENIAAEIAELEQKLKELRKAADEQLAR--EKASIIGQINELIAKYGVSPHELAFPKT 59 Query: 81 AAAPRAG----KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +A +K P KY+ TWTG+G+ P I A + D+FLI Sbjct: 60 TKGSKASSSKFQKGTPGKPKYRDPKTGA---TWTGKGKPPAWIRDA----ANRDEFLI 110 >UniRef50_B5J2H6 H-NS histone family n=2 Tax=Octadecabacter antarcticus RepID=B5J2H6_9RHOB Length = 113 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + S LE++ ++ R+++ ++ R E+ L A G+ E+++G Sbjct: 5 LKNMSRKELEKLASDVGKSLEKHRKKDLKKVRLEMEK---------LAAAHGVTVEDIMG 55 Query: 78 N-SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 N ++ A + K+ D ++KTWTG+GR P+ A+A G++ + I Sbjct: 56 NKATTEATPKKAAAVKAKSAPKYADSADKSKTWTGKGRQPEWFKSAIAAGQTPESMAI 113 >UniRef50_C6BPP4 Histone family protein nucleoid-structuring protein H-NS n=6 Tax=Ralstonia RepID=C6BPP4_RALP1 Length = 103 Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 +V + + +++ + + AER + E + EL +A + Sbjct: 10 DIVKQIQELQKQADKLKAAERSTALQEVREQISVFEFTAAELGF-----KGKASLAGKKV 64 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P +YK + TWTG+G P + A+ G L+DFL+ Sbjct: 65 PTRYKD----DKGNTWTGRGHRPGWLKAAIESGAKLEDFLV 101 >UniRef50_Q2CI47 DNA-binding protein, H-NS family protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CI47_9RHOB Length = 100 Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R + + ++ ER+ + + + G + EL +A + GK P KY+ Sbjct: 10 KRDIDRQLEKLAKDERKLALEAAEKAAREHGYSLSELT---AAGGAKKGKSGSVNPPKYR 66 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + +TWTG+GR P I A A+G + I Sbjct: 67 --NPDNPDQTWTGKGRRPDWIKAAEAKGVDISTMQI 100 >UniRef50_C5SD38 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD38_CHRVI Length = 98 Score = 64.8 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 +R +E+ + A R + I L L+ + PE+L ++ + GK + P KY+ Sbjct: 14 KRLLDEKIENARKAARGQAIEQALSLITTFQLTPEDLFSST-----KKGKAKSKAPPKYR 68 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KTWTG+G P + K+ DD+LI Sbjct: 69 DPETG---KTWTGRGPIPSWLKD-----KNRDDYLI 96 >UniRef50_Q47497 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47497_ECOLX Length = 142 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 7 SLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMK 66 + R A+ R+ + LE+++ + + + E+ +++Q+ E+ + M+ Sbjct: 19 IMCERRKATAVLRKIPPENLEQLINMWSDIAQGMIEKFKEEQKATEEKAAATKRF---ME 75 Query: 67 ADGINPEELLGNSSAA-APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 I +E L P K KY+ +V+G++ TWTG+GR P A+ Sbjct: 76 EHNITADEALQIFENLFGPSTKSKSTFGKVKYRI-EVDGKSITWTGKGRRPAAFAEMSD 133 >UniRef50_B4SKF4 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Stenotrophomonas RepID=B4SKF4_STRM5 Length = 139 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 I+ L VV E+R++ +R + G EEL G Sbjct: 2 TIDIESLSLRELGALVVAAEQRKQLISSRRPAS---AVRRMLKAAAAEAGYTLEELFGGE 58 Query: 80 S-----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A ++ AKY+ + + TW+G+GR P+ +A + +G + DFLI Sbjct: 59 ANEEAAPRRKPARRRTGKVAAKYRDPEY--KRLTWSGRGRMPRWLASKVQKGHKVTDFLI 116 >UniRef50_B2UAC6 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiaceae RepID=B2UAC6_RALPJ Length = 95 Score = 64.8 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 44 EEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVN 103 E L R E I+ + G+ +L R R A+Y+ + Sbjct: 11 ESSPAAMLRRRAEAIAWVRMQIARYGLAYADLTAAGCFPPLR----RASSKARYR----S 62 Query: 104 GETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 E +TW G+G P + +A+ G+S + F + Sbjct: 63 AEGQTWDGEGDMPDWLQRAVNAGQSPEHFRV 93 >UniRef50_B2AJM1 Putative uncharacterized protein n=3 Tax=Cupriavidus RepID=B2AJM1_CUPTR Length = 96 Score = 64.4 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 53 ERQEKISTWLELMKADGINPEEL-LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTG 111 ER + I M G+ EEL A P P Y+ N E TW G Sbjct: 15 ERADAIRWIQAQMDDYGLTLEELDAAGCFAPPPPPPAAPPPPVVCYR----NAEGLTWDG 70 Query: 112 QGRTPKPIAQALAEGKSLDDFLI 134 QG P + +A+ G+S++ + + Sbjct: 71 QGEMPSWLKRAVNAGQSVEFYRV 93 >UniRef50_A1VV25 Histone family protein nucleoid-structuring protein H-NS n=3 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV25_POLNA Length = 135 Score = 63.6 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 32 KFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA---------- 81 K E +++ ++ + R ++ E M A GI +EL Sbjct: 10 KLNQQIAEL--QKKSEELKKKNRPVVVAELRERMAAYGITAQELTRPVPKARMLKEDFAT 67 Query: 82 --AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A + K P PAK++ D E W+G+G PK + + +G S D+FLI Sbjct: 68 PIKAVKGKIKSSPLPAKFRSPDGKNE---WSGRGMAPKWMNTLIEQGHSRDEFLI 119 >UniRef50_C5T058 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T058_ACIDE Length = 118 Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + R + E++Q AE+ ++ E + GI +L + A K + + Sbjct: 12 EIDAEIARLQNEREQLREAEKAGVVARMKEAVAYYGITAADLGLGVTTRKAGAKKASEAK 71 Query: 94 PAKY-----KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 K + + W+G G PK +ALA GK+ D Sbjct: 72 APKAGRVAGRIKYKDDAGHAWSGYGPKPKWFTEALASGKTEADLR 116 >UniRef50_UPI00016A3729 H-NS histone family protein n=4 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3729 Length = 101 Score = 63.2 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 9/102 (8%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 + K R + + + E Q I +++ + PE+L + + R +R P Sbjct: 5 LDLKAKIRTLQVQAELARKNEVQRVIEEIQKVIVEFDLKPEDLFADIQRKSRRVR-RRAP 63 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ W+G+GR P+ I G+ + FLI Sbjct: 64 ALAKYRDPASGA---VWSGRGRAPRWI-----AGQDRESFLI 97 >UniRef50_A9C2A8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Delftia acidovorans SPH-1 RepID=A9C2A8_DELAS Length = 104 Score = 62.8 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + L ++ + E + E ++E + + M A G+ E+ + S Sbjct: 1 MDSEELAQLR------LQYHDLGERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFS 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 G PAKY+ N TWTG+G+ P Q +G ++ Sbjct: 55 KVRKPTGVSGMKVPAKYRDRATNA---TWTGRGKAPTWFNQERVQGGHIEQLR 104 >UniRef50_Q0AEM4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AEM4_NITEC Length = 100 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 18/113 (15%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 +++ ++ + E+ + + +++ +R+E + ++ G EL + S+ Sbjct: 3 NLEEVQGIDEQIAAL------QARKKELLENKRKEVLKEIKRAIQIYGFTVNELGLSGSS 56 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++ + N +TW G G PK + + +A G L+D LI Sbjct: 57 KKRQP-----------RYANPNDPDQTWGG-GARPKWLKEYMARGGKLEDCLI 97 >UniRef50_A4JUS0 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia cepacia complex RepID=A4JUS0_BURVG Length = 113 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 14/108 (12%) Query: 27 EEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E+M ++ + E E + + ER + L+ + E+ G S+ Sbjct: 13 EKMSTFHELLAQRAALEAEIEAAKAEERLIALEEVKRLVDEFAFSTREVFGTSAV----- 67 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KRQP +Y+ TW+G+GR+P I +GK F I Sbjct: 68 -RKRQPVQPRYRDPATGA---TWSGRGRSPAWI-----DGKDRSQFQI 106 >UniRef50_D0KXX3 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXX3_HALNC Length = 107 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%) Query: 20 EFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNS 79 S + L +++ ++R ++ R+ AE EL + ++ EL G Sbjct: 8 SLSAEDLRQLMANAERTLRDRHQQRVHSLRKEAE---------ELAASLNMSVAELFGLE 58 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 ++ K PAKY + +TWTG+G+ P +A ALA G+SL+ F + Sbjct: 59 KSSKLANKK----LPAKY--INPANPAQTWTGRGKRPHWLADALARGESLEKFAV 107 >UniRef50_A3NFL1 H-NS histone family protein n=28 Tax=pseudomallei group RepID=A3NFL1_BURP6 Length = 101 Score = 62.4 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 18/113 (15%) Query: 22 SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSA 81 + + L+ L+ +E + + E +S E + I P+++ + Sbjct: 3 TYEELKAQLDALN---------KEAEAAKAREISTALSQIRETVLRYEIRPDQIFPQWTR 53 Query: 82 AAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + R P P KY+ +TW G+GR PK + G + FLI Sbjct: 54 LRSPDKR-RGPLPPKYRNPMTG---ETWCGRGRAPKWM-----SGSPREVFLI 97 >UniRef50_B1FNZ3 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FNZ3_9BURK Length = 115 Score = 62.1 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Query: 42 EEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTD 101 +E ++ ERQ + E + G+ E+ G + A + R+ KY+ + Sbjct: 14 LAKEVERARCQERQGVLDDVREKVGRYGLQVVEIYGEAQVRALQCLGNRRKIAPKYRDPE 73 Query: 102 VNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TWTG+G P+ I G++ +FLI Sbjct: 74 SGA---TWTGRGLEPRWIR-----GRNRREFLI 98 >UniRef50_B1Z3P6 Histone family protein nucleoid-structuring protein H-NS n=13 Tax=Burkholderia cepacia complex RepID=B1Z3P6_BURA4 Length = 102 Score = 62.1 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 9/88 (10%) Query: 47 QQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGET 106 ++ LAE I + G+ ++ G A + +Y+ Sbjct: 19 EEARLAELDAVIDEIRSRVAEYGLTAGQIFGRHGGTAKATPRPSGS-APRYRDPKTGA-- 75 Query: 107 KTWTGQGRTPKPIAQALAEGKSLDDFLI 134 TW+G+GR P+ I G + FLI Sbjct: 76 -TWSGRGREPRWIK-----GGRRERFLI 97 >UniRef50_Q82UX8 H-NS histone family n=1 Tax=Nitrosomonas europaea RepID=Q82UX8_NITEU Length = 96 Score = 62.1 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 12/101 (11%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 + + ++ +++ + E + I+ ++ GI ++L +K+ Sbjct: 7 IEIQEEIKKLQKQANEIRAKEIADIIADIKVKIQLYGITEKDLGFGE-------KQKKTI 59 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 P YK + +TW+G+GR P I + L G +L++ L Sbjct: 60 FPPLYKKGN-----RTWSGRGRQPGWIKEHLEAGGNLEELL 95 >UniRef50_B0RKN1 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Yersinia RepID=B0RKN1_YEREN Length = 138 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 3 VMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWL 62 + Q LN + + + R + D + ++ + V ++ +E+ ++R+ AERQ KI Sbjct: 11 DVSQFLNQLTRRKKVLRLMTADQINILISDAKAVLEDVIADEDIKKRQEAERQTKIREAA 70 Query: 63 ELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 L++ +GI ++L + + P Y NG+ + G GR K + Sbjct: 71 ILLRNEGIGLDDL-----EKHMVSRRSPTVEPKTYLI---NGKKIIYKGSGRMNKVLKAI 122 Query: 123 LAE-GKS-LDDFLI 134 + + G L+ +L+ Sbjct: 123 VDKEGHDALEKYLV 136 >UniRef50_Q46969 Microcin DNA binding protein n=8 Tax=Enterobacteriaceae RepID=Q46969_ECOLX Length = 171 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 4/97 (4%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 ++ +++ NIR+LR ARE + L EM EK VV +ERRE+ E++ E AER+ K Sbjct: 11 GIISRTMMNIRSLRVFAREIDFEQLLEMQEKLNVVIEERREDAEREAAERAERERKRQEL 70 Query: 62 LELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 L+L+ +G +PEELLG S A K R+ K + Sbjct: 71 LQLIAGEGFSPEELLGLSEE----APKSRKKTLPKPR 103 >UniRef50_Q5NX28 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX28_AZOSE Length = 130 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 26/132 (19%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 + S+ L+++ ++E +R L ++ I ++ G++ +E+L Sbjct: 4 LKNLSLPELKKLS---------VAVQKELDRRTLQSKKALIKQVQQMAAEHGLDADEMLA 54 Query: 78 -------------NSSAAAPRAGKKRQPRPAKYK----FTDVNGETKTWTGQGRTPKPIA 120 + + A KK+ P K K + + + W+G+GR P + Sbjct: 55 EVGSSGREGSSVKSGAGKAAPGRKKKAPAVKKEKLPPVYWNPVNAQEGWSGRGRKPSWVI 114 Query: 121 QALAEGKSLDDF 132 L G L+ Sbjct: 115 TFLENGGDLESL 126 >UniRef50_B1XWK6 Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XWK6_LEPCP Length = 123 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 18/125 (14%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPR 85 + + L + + + E + E +S E + + +L ++ AA Sbjct: 1 MAKSLAQVNAQIAKL--QREADALKAKEVAGVVSRIKEAIAIYSLTSADLFDDAVAAVKP 58 Query: 86 AGKKRQPRPAKY----------------KFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 A ++++ A + + TWTG G+ P A+ GK Sbjct: 59 AARQKRTVAAAPVVGKKAPKAAAKKAESQIKYRDEAGHTWTGHGKRPNWFKAAIEAGKKP 118 Query: 130 DDFLI 134 +D + Sbjct: 119 EDLAV 123 >UniRef50_A9C2K0 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=A9C2K0_DELAS Length = 136 Score = 61.7 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ + + E + + +S +L+ G +++ Sbjct: 30 ELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYIPEK--------TSA 81 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ TWTG+G+ P I + DDFLI Sbjct: 82 PAKYRDPATGA---TWTGRGKPPNWIKD-----QDRDDFLI 114 >UniRef50_Q395B4 Histone-like nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=Q395B4_BURS3 Length = 96 Score = 61.3 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + + + + ER ++ EL+ + E+ G + Sbjct: 1 MHQVQTLQAQLAELDRRIKAARSRERNAVLAQVRELVTGYALTAREIFGQGYSD----RA 56 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 K KY+ TW+G+GR P I G+ FLI Sbjct: 57 KLFTVGVKYRDPATGA---TWSGRGRAPAWIV-----GRDRTAFLI 94 >UniRef50_A1VUA7 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VUA7_POLNA Length = 99 Score = 61.3 bits (147), Expect = 9e-09, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 10/107 (9%) Query: 29 MLEKFRVVTKERRE-EEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 M + + ER ++ ++ + R E IS L L+ G+ +L + ++ + Sbjct: 1 MSNTLQELLAERDALDQRIKELQAEARLEAISNVLSLIDRHGLKENDLFSSGTST-KKNK 59 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PAKY+ ++ E W+G+G P + GK D+LI Sbjct: 60 YSATKVPAKYRDSETGSE---WSGRGIPPVWLR-----GKDKKDYLI 98 >UniRef50_C9CRV4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CRV4_9RHOB Length = 107 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 5/94 (5%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 ++ +E + + + ++ +E+ K + +++ R +K Y+ Sbjct: 18 KQIDETLENKLKQNMKNALAEMVEVAKKHEVAFADVIEVYE---RRNSRKLAKVGLIYR- 73 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + N ++TWTG+GR P + + L EG + DD L Sbjct: 74 -NPNNPSQTWTGKGRRPLWVLELLREGMTFDDML 106 >UniRef50_Q46693 KorB protein n=6 Tax=root RepID=Q46693_ECOLX Length = 101 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 57 KISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTP 116 K WL GI+ E + R+ RPAKY+ D TW+G GR P Sbjct: 32 KRPAWLTAKLDAGISLE------AMKMQGVANPREHRPAKYR--DPRNAENTWSGTGRRP 83 Query: 117 KPIAQALAEGKSLDDFLI 134 + + L G SLDD I Sbjct: 84 TWLKELLDSGLSLDDLKI 101 Score = 48.6 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 +KR Y+ D + TWTG G+ P + L G SL+ Sbjct: 6 KSEKRPKGEPVYR--DPDNPFNTWTGIGKRPAWLTAKLDAGISLEAM 50 >UniRef50_Q2KZ53 DNA-binding protein (Histone) n=5 Tax=Bordetella RepID=Q2KZ53_BORA1 Length = 120 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 15/124 (12%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 + K R ++ + + R+ I++ ++ M+ I PEE++ Sbjct: 1 MPRETYAAQQAKIEKEIS--RLQKRAEALQTRRRKPVIASIVKSMREYNITPEEIIAALG 58 Query: 81 AAAPRAGKK----------RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 +A ++ KY +TW+G+G+ P+ + G S D Sbjct: 59 SAKSTRAAAPRRKATSDGSKRAVAPKYLHPQTG---ETWSGRGKAPRWLVAEEGNGASRD 115 Query: 131 DFLI 134 FLI Sbjct: 116 SFLI 119 >UniRef50_Q13JE5 Histone-like nucleoid-structuring protein H-NS n=10 Tax=cellular organisms RepID=Q13JE5_BURXL Length = 298 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE++ + ++ + + + + + T LM+ G+ +++ + + Sbjct: 55 VATLEQIQARL------KKLQAQAEAIVAKQSSAVLETIRGLMEKHGLTTKDIDAHLGSK 108 Query: 83 APRAGKKRQPRPAK------YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + Y+ TWTG GR P IA K FLI Sbjct: 109 KRGPKAGAKAAAKTAKSVAKYRDPKSGA---TWTGHGRAPAWIANV----KDRAKFLI 159 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 76 LGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 S A+ G+++ P+PA Y+ TW+G+G P +A A K L D Sbjct: 185 ASKSVGASGGTGQRKGPQPALYRDPKSGA---TWSGRGPAPAWLAGAKDRTKFLID 237 >UniRef50_A1K1V6 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1K1V6_AZOSB Length = 132 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE--- 74 + +++ L + E+ + + ++R+ + L +A+G+ E Sbjct: 5 LKSYTLPQLRALREQTARAID---------RLQRSQRETLLRRLSALARAEGLTLAELAE 55 Query: 75 ----LLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLD 130 + G RQP P KY+ + W+G+GR P +A LA G S+D Sbjct: 56 DAAAMKGAERPRKHPRTTPRQPLPVKYR--HPSNRALAWSGRGRQPHWVAAWLANGGSMD 113 Query: 131 DFL 133 Sbjct: 114 ALA 116 >UniRef50_A1W6B6 Nucleoid protein H-NS n=1 Tax=Acidovorax sp. JS42 RepID=A1W6B6_ACISJ Length = 117 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 4/104 (3%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG----KK 89 + + R ++E+ Q E+ +S E + GI +L + + R G K Sbjct: 12 EIEAEIARLQKERDQLREGEKAGVVSRMKEAIAYYGITAADLGLSVTKRKARTGVAQAKN 71 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 + + A + + +TW+G G P+ +ALA GK+ D Sbjct: 72 SKVQRAASRIKYKDDAGRTWSGYGPKPRWFTEALASGKTEADLR 115 >UniRef50_A4JW45 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JW45_BURVG Length = 101 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 11/99 (11%) Query: 36 VTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPA 95 +T+ + +Q ER I T ELM GI +L+G R + PA Sbjct: 13 LTELAELDVRIEQARARERVRAIETIHELMDTYGIKHRDLVG---RNGRRGSYQVSALPA 69 Query: 96 KYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ + W G+G P I GK FLI Sbjct: 70 KYRDPATG---REWCGRGNVPLWIR-----GKDRTRFLI 100 >UniRef50_A1KAI1 Putative trans-acting regulatory protein HvrA n=1 Tax=Azoarcus sp. BH72 RepID=A1KAI1_AZOSB Length = 119 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 22/128 (17%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S+ L + R E E ++R + R++ + ++ +G++ +L+G Sbjct: 3 LGTLSLTELRRLQS---------RVEAEIRRRSDSARRDLLKKMQKMAADEGLSLSDLIG 53 Query: 78 NSSAAAPRAG-----------KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEG 126 ++ A KK++ KY+ + G W+G+GR P+ +A+G Sbjct: 54 SAPVPATEKKPAAKRGRAAAGKKKEAPTVKYRHPETPGVG--WSGRGRKPQWALDWIAQG 111 Query: 127 KSLDDFLI 134 KS+++ + Sbjct: 112 KSIEELAV 119 >UniRef50_B2JNN0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JNN0_BURP8 Length = 239 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 17/106 (16%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEE--------------LLGNSSAAAPR 85 ++ + + + ++ ELM G+ E+ LLG +A A Sbjct: 12 KKLQTQAEALIAKRAHGALNQIRELMIKHGLTTEDIERRAKARRERSERLLGTKTARAKP 71 Query: 86 AGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDD 131 A + P KY+ TW+G R P I K L D Sbjct: 72 ATAAKGKLPPKYRDPKTGA---TWSGHARPPAWIKDVKDRSKFLID 114 >UniRef50_B3DCX2 DNA-binding protein H-NS n=24 Tax=Burkholderia RepID=B3DCX2_BURM1 Length = 110 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Query: 26 LEEMLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKADGINPEELLGNSSAAAP 84 + +ML + + RE + E++ + E + GI+ EELL + P Sbjct: 1 MNDMLTDIEALQAQLREVNARLAEVKRDEKRAALDAIREQVALYGISEEELLLAAGFRKP 60 Query: 85 RAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R + AKY K W+G G PK + GK+LDD+ I Sbjct: 61 RKRRTS----AKYYDPSTG---KEWSGFGPRPKWLV-----GKNLDDYRI 98 >UniRef50_A9BLZ8 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderiales RepID=A9BLZ8_DELAS Length = 98 Score = 59.4 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 ++ E++ + + I+ +++ G+ E++ ++ + +AG KR K+ Sbjct: 11 QKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPSAKSKPDKAG-KRSVGEPKF 69 Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + + TWTG+G+ PK I EGK I Sbjct: 70 RNPETGA---TWTGRGKPPKWI-----EGKDRASLAI 98 >UniRef50_Q3JS38 H-NS histone family protein n=7 Tax=pseudomallei group RepID=Q3JS38_BURP1 Length = 102 Score = 59.0 bits (141), Expect = 4e-08, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 14/95 (14%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + E A ++ ++ + G + +++ P G R+ AKY Sbjct: 11 KIELEARLADERRAAKEAVLTEIRACVDEFGFSLDDVF------PPDGGHGRRKVRAKYY 64 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 TW+G GR P I GK + F Sbjct: 65 DPASGA---TWSGVGREPVWIR-----GKDREQFE 91 >UniRef50_A9EH02 Histone-like protein of HNS family n=4 Tax=Rhodobacteraceae RepID=A9EH02_9RHOB Length = 118 Score = 59.0 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 15 RAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEE 74 + + S LE++L + + ++++ ++ A + G + + Sbjct: 4 KNELKALSRKELEKLLADVKKALSSVQARDQREAKKAATKAA---------AEFGFSLND 54 Query: 75 LLGNSS--AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 + ++ + K + +K F + +TWTG+GR P + +A G + Sbjct: 55 ITETAALVPKKRKTKAKAAKKQSKPVFFNPEDTNQTWTGKGRQPNWYREQIATGMDPEAM 114 Query: 133 LI 134 I Sbjct: 115 RI 116 >UniRef50_B2TGU8 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B2TGU8_BURPP Length = 106 Score = 58.2 bits (139), Expect = 7e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNS-SAAAPRAGKKRQPRPAKYKFTDVNGETKT 108 E + + G ++ G + + + P AKY +T Sbjct: 26 RAEEAAGVLEDIRAKVATYGFTERDVFGRKRATQNGKKPQAGVPGEAKYLNPKTG---QT 82 Query: 109 WTGQGRTPKPIAQALAEGKSLDDFLI 134 W+G+GR P I A K+ D FLI Sbjct: 83 WSGRGRAPAWIVSA----KNRDRFLI 104 >UniRef50_B3EGH4 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Chlorobium limicola DSM 245 RepID=B3EGH4_CHLL2 Length = 97 Score = 58.2 bits (139), Expect = 7e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGK 88 M + + +++ +++ A +++ ++ L M GI E+ +A K Sbjct: 1 MQTIAELQAQMASIQKQINEQKAAGKRDALADILSKMNEFGITIHEIQRRIVPVKAKAAK 60 Query: 89 KRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 KY+ E KTW+G+G+ PK + G LDD+L+ Sbjct: 61 T-----VKYRL-----EDKTWSGKGKKPKWVKNIEERGGRLDDYLV 96 >UniRef50_C1D8I9 Putative DNA segregation ATPase FtsK/SpoIIIE-like protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8I9_LARHH Length = 290 Score = 58.2 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 R + +F + TW+G+GR P + + L EG SL D Sbjct: 225 EQQEEERAGREAATARRESTIRFRHPQNQDMTWSGRGRKPAWVQEWLDEGGSLADL 280 >UniRef50_B2AJ99 Histone-like nucleoid-structuring protein H-NS n=17 Tax=Burkholderiaceae RepID=B2AJ99_CUPTR Length = 104 Score = 57.8 bits (138), Expect = 9e-08, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 13/105 (12%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAA----PRAGKK 89 ++ +++ E + ++ +E I +LM + PE++ A ++ Sbjct: 6 ELIAQKQAIEAQLEEARASEVASVIEQIRDLMAQYDLLPEDVAPRRRRGRPVGAASAQRE 65 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + P P KY KTW+G+GR P + GK + FLI Sbjct: 66 KAPLPPKYMDPKTA---KTWSGRGRAPAWL------GKRPERFLI 101 >UniRef50_A0B3N4 Histone family protein nucleoid-structuring protein H-NS n=38 Tax=Burkholderia RepID=A0B3N4_BURCH Length = 101 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL--GNSSAAAPRAGKKRQ 91 ++ + R +++ + + I+ + I PEEL S+ A K ++ Sbjct: 6 QLSAQLERLQQKIDKEREKAIADAIAHIRAKIDEYDITPEELGFRPAGSSTAAATAKPKR 65 Query: 92 PRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KY +TW+G+GR P + GK+ FLI Sbjct: 66 TLPPKYLNPKTG---ETWSGRGRAPAWL------GKNRGRFLI 99 >UniRef50_A5EX59 Putative uncharacterized protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX59_DICNV Length = 101 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 55 QEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGR 114 +E+ E++ + + + K RP K F + + +TW+G GR Sbjct: 25 KERKKRAREIIAEAQRQASRFAQDIAPTV--SRKTASKRPPK--FANPDNPEQTWSGMGR 80 Query: 115 TPKPIAQALAEGKSLDDFLI 134 P + +G + + LI Sbjct: 81 QPDWYKAYIDKGGNEKNMLI 100 >UniRef50_B1FTJ8 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia graminis C4D1M RepID=B1FTJ8_9BURK Length = 115 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKK 89 +E ++ ++ ++ + + E ++ ++ M I+ EL G + G Sbjct: 6 IEIAQLRAQQEALNKQLAEAKERETLLVLNEIVQKMGEYRISVSELTG------RKVGVH 59 Query: 90 RQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 AKY+ TW+G+GR P I GK ++FL Sbjct: 60 ANELAAKYRDPVSGS---TWSGRGRAPAWI-----AGKDRNEFL 95 >UniRef50_B1KCC1 Histone family protein nucleoid-structuring protein H-NS n=4 Tax=Burkholderia RepID=B1KCC1_BURCC Length = 113 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 21/118 (17%) Query: 17 MAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELL 76 + +I L++ L ++ +E R+ E++ K+ E +K I ELL Sbjct: 3 QMKSPTIRELQKQLGHLNLIVEEARQ---------KEKKIKLEEIAEQVKLFDITEIELL 53 Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + RQ AKY D ++W+G+G PK + GK+LDD+LI Sbjct: 54 RAAGF----VKANRQKASAKYYDPDTG---RSWSGKGARPKWLT-----GKNLDDYLI 99 >UniRef50_B1Z177 H-NS histone family protein n=4 Tax=Burkholderia ambifaria RepID=B1Z177_BURA4 Length = 105 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 14/97 (14%) Query: 38 KERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKY 97 K+ EE+ + LA + + ++ G +++ S A + + KY Sbjct: 10 KKALLEEQLVRERLAIATMVLLEIRQCIEEFGFGVKDVFPAQSGAPGKRRR------VKY 63 Query: 98 KFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + ++W+G GR P + G+ D FLI Sbjct: 64 FNPETG---QSWSGVGREPVWLR-----GQDRDRFLI 92 >UniRef50_A3NU43 H-NS histone family protein n=24 Tax=pseudomallei group RepID=A3NU43_BURP0 Length = 114 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 E + + I LM GI+P EL G A A R K ++ Sbjct: 12 LEIHAEIEALRRKAKAAAIMQIELLMTQYGISPGELKGVDGAPAHRK--------PKARY 63 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +TW+G+GR PK + G+ L LI Sbjct: 64 WNPE-TGQTWSGRGRMPKWLV-----GRELASHLI 92 >UniRef50_B2T963 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2T963_BURPP Length = 89 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 19/95 (20%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKF 99 R E + +Q E ++ ++ + ++ G+ PE+L G + + +Y+ Sbjct: 13 RALEAQAEQLRRHELRQVVAEMRQKIRDYGLTPEQLFGPNLSDL-----------VRYRH 61 Query: 100 TDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + +TW G GR P I GK F + Sbjct: 62 PETG---ETWNGMGRPPNWIK-----GKDRGPFRV 88 >UniRef50_Q3JFX1 H-NS histone family protein n=27 Tax=Burkholderia RepID=Q3JFX1_BURP1 Length = 113 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 + + + + E ++ + A+R LEL+ G++ +++ R Sbjct: 2 KTYSELLAQWDDLKNEIDRAREREAQRLA--QRVLELLAESGVDVRDMMNPRPRGQGRG- 58 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + KY TW+G+GR PK + G++ FLI Sbjct: 59 ---RRITPKYWNPQTGA---TWSGRGRMPKWLI-----GQNPRQFLI 94 >UniRef50_C9Y6P0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6P0_9BURK Length = 109 Score = 55.5 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 21/121 (17%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 S L+ +E+ + + ++E ++ E ++ G+ +L + Sbjct: 3 TSYRDLKAQIEELTA---------KAEAARVSEVAAVVADIKEKIEEYGLTASDLGFKTD 53 Query: 81 AAAPRA-------GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ +++ KYK + + W+G+GR P L K+LDD+ Sbjct: 54 KGTRKSVGQAIAEANEKKSVEPKYKGPN----GELWSGRGRAPVWTQN-LPTDKTLDDYK 108 Query: 134 I 134 + Sbjct: 109 V 109 >UniRef50_B2JR07 Histone family protein nucleoid-structuring protein H-NS n=12 Tax=Burkholderia RepID=B2JR07_BURP8 Length = 112 Score = 55.5 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 10/85 (11%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 + +R ++ M GI ++L + R R Y+ + +TW Sbjct: 2 DERKRDSMVAYLRRRMAEVGIELDDLAAAIAEDQVRQKTAR------YR----SATGETW 51 Query: 110 TGQGRTPKPIAQALAEGKSLDDFLI 134 +G G P+ + QA++ G+S+D F + Sbjct: 52 SGDGEMPQWLKQAISAGQSMDHFAV 76 >UniRef50_Q6Y661 BphA n=2 Tax=Burkholderia pseudomallei RepID=Q6Y661_BURPS Length = 126 Score = 55.5 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 14/100 (14%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ R E+E + L + E+M GI+ E A + R+ Sbjct: 14 ELLAQKTRLEKEAENSRLEAEKRICERVREIMAEYGIDVE------VRAGGSKRETRRHA 67 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y + +TW+G+G PK I GK FL Sbjct: 68 VPRYWNPETG---QTWSGRGAEPKWIV-----GKDRSRFL 99 >UniRef50_C4I5I2 H-NS histone family protein n=16 Tax=pseudomallei group RepID=C4I5I2_BURPS Length = 128 Score = 55.1 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 21/106 (19%) Query: 28 EMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG 87 ++++ K + +++++ ++ + + E + G P+E+ + Sbjct: 33 NSYQEYKQHVKTLQATLDRERKAISAK--VLQEIRECIAEFGFTPQEVFSS--------- 81 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ R KY TWTG GR P+ I GK F Sbjct: 82 --KKKREPKYYDPVSGS---TWTGLGREPEWIR-----GKDRKAFE 117 >UniRef50_C9NQ13 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQ13_9VIBR Length = 79 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 MS L +L ++R LRA R S++ LE L + V +E R ER+ +++ Sbjct: 1 MSNQLATLRHVRRLRACLRSLSLEELEVALSNLQTVVQEHRT---------REREAALAS 51 Query: 61 WLELMKADGINPEELLGNSSAAAPRAG 87 +E ++ G++ +E+L A R+ Sbjct: 52 IVERIRCSGLSVDEILTGLKALTSRSA 78 >UniRef50_D0IZE2 Histone-like nucleoid-structuring protein H-NS n=4 Tax=Comamonadaceae RepID=D0IZE2_COMTE Length = 112 Score = 54.4 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 15/101 (14%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++ ++ ++ ++ E +E ++T +L+ G +++ + Sbjct: 6 ELIAQKNALDKRIEEARSTEAKEALATVKQLIATFGFTSQQVFPWKPEEKKK-------V 58 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 A+Y + TWTG+G+ PK I EGK + I Sbjct: 59 EARYYDPESGA---TWTGRGKPPKWI-----EGKDRGQYEI 91 >UniRef50_Q3JS54 BphA n=11 Tax=Burkholderia pseudomallei RepID=Q3JS54_BURP1 Length = 151 Score = 54.4 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 23/115 (20%) Query: 19 REFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGN 78 + + L + K + R E E++ E+M GI+ E Sbjct: 33 KMIAFRDLLALQTKLEKEVENSRLEAEKR---------ICERVREIMAEYGIDAE----- 78 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 A + R+ +Y + +TW+G+G PK I GK FL Sbjct: 79 -VRAGGGRRETRRRAVPRYWNPETG---QTWSGRGGEPKWIV-----GKDRSQFL 124 >UniRef50_C4KW97 H-NS histone family protein n=28 Tax=pseudomallei group RepID=C4KW97_BURPS Length = 93 Score = 54.0 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 13/100 (13%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + R +S +++ + +E+ G ++R Sbjct: 5 LDLLAEREALMIKLDAARMQARSAALSEVKRIVEEFELTTQEVFG-----RAGVLRRRGK 59 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 KY+ TW G+GR P I GK F Sbjct: 60 LKPKYRDPKTGA---TWNGRGRPPSWI-----AGKDRAAF 91 >UniRef50_B1KCF0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF0_BURCC Length = 111 Score = 54.0 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 30 LEKFRVVTKERREEEEQQQRELAERQE--KISTWLELMKADGINPEELLGNSSAAAPRAG 87 +K ++ +E E+++ ER I ++ ++ + + A + Sbjct: 8 YQKLLEQYEQLTQEIERERAVETERLVNLVIERVRQVFAEFHLDID-----VAPRAVQEP 62 Query: 88 KKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +KR+ KY + +TW G+GRTP + GK + + + Sbjct: 63 QKRKKLTPKYWNPETG---QTWCGRGRTPLWM-----AGKDRERYRV 101 >UniRef50_Q46U69 Putative uncharacterized protein n=4 Tax=Cupriavidus RepID=Q46U69_RALEJ Length = 108 Score = 54.0 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 27/109 (24%) Query: 49 RELAERQEKISTWLELMKADGINPEELLGNSSAAAPRA-------------------GKK 89 + + I+ E M + ++L+ + Sbjct: 3 ESDSAKLAAIAWIREQMDNYALTLDDLIAAGCFDGEPSHGDVEAGEMPGAPDVPAVMAAT 62 Query: 90 RQPRPAK----YKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P+P K Y+ N ++W G G P + +A+ G+S+D + + Sbjct: 63 AAPQPPKKGPIYR----NALGQSWDGTGEYPDWLQRAVNAGQSIDFYRV 107 >UniRef50_A5UCH6 Acetolactate synthase 3 catalytic subunit n=1 Tax=Haemophilus influenzae PittEE RepID=A5UCH6_HAEIE Length = 122 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 42/67 (62%) Query: 1 MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60 M+ +++ L N+R+LRA RE +++ E LEK + +E+R E + + ER+E+++ Sbjct: 1 MNELVRGLTNLRSLRAAVRELTLEQAENALEKLQTAIEEKRANEAELIKAETERKERLAK 60 Query: 61 WLELMKA 67 + ELM+ Sbjct: 61 YKELMEK 67 >UniRef50_C4KLJ2 Putative uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=C4KLJ2_BURPS Length = 121 Score = 53.2 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + R +EE + +E ++ +++M I +++ R+ Sbjct: 22 LDLMKRHRALQEEIAAVRRHDTREIVTCIVQMMMMYEICLDDISDALPRQQRLGL--RRR 79 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 R KY + +TW+G GR P+ + G+ +FL Sbjct: 80 RTPKYMDPESG---RTWSGYGRPPRWM-----AGRDPAEFL 112 >UniRef50_B1TFR0 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TFR0_9BURK Length = 111 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 +V + ++E + E + +S +++M+ G++ E++ R + Sbjct: 19 LDLVKRHHALQDEIDRVRRREVKRVVSCIVKMMEVYGLDLEQI----KDGVERQSSPHRE 74 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 KY KTW+G+GR P + K +D+L Sbjct: 75 VEPKYMDPQTG---KTWSGRGRMPLWMRD-----KRKEDYL 107 >UniRef50_Q397M1 Histone-like nucleoid-structuring protein H-NS n=1 Tax=Burkholderia sp. 383 RepID=Q397M1_BURS3 Length = 114 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 11/102 (10%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++V + +EE ++ ER + I+ LM I +L+G + + R + Sbjct: 11 AQLVVELAELDEEIERARARERVDAIAAVHSLMDTYAIKHRDLVGRNGS---RGSYIVKV 67 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 PA+Y+ K W+G+G P I GK F++ Sbjct: 68 LPARYRDPASG---KEWSGRGNAPLWIR-----GKDRRQFVV 101 >UniRef50_A0B4Y5 Histone family protein nucleoid-structuring protein H-NS n=5 Tax=Burkholderia RepID=A0B4Y5_BURCH Length = 110 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 18/114 (15%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 L + + + E + E++ ++ + E + I +E+L Sbjct: 1 MDAPTLPALRAELDAL------NIELARVRAQEKKAALAAFKEQVTLYDITQQEVLSALG 54 Query: 81 AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P+ + +F D + ++W+G+G PK + GK+LDD+ I Sbjct: 55 YLQPKRRRAAA------QFYDPS-SGRSWSGRGPRPKWLV-----GKNLDDYRI 96 >UniRef50_A4JVX9 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JVX9_BURVG Length = 98 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 8/87 (9%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 ++V + + E + R++ ++ ELM I P EL QP Sbjct: 8 QLVAELKELERKIIAARAQARKDALAQIAELMYEFDIKPNEL-----RRPRNIRYNVQPT 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIA 120 +Y+ TW+G+G P IA Sbjct: 63 RPRYRDPVSGA---TWSGRGHVPAWIA 86 >UniRef50_B2TE45 Histone family protein nucleoid-structuring protein H-NS n=7 Tax=Burkholderia RepID=B2TE45_BURPP Length = 283 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 22/119 (18%) Query: 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS---- 80 LE++ K ++ + + + Q + +LM G+ ++ + Sbjct: 3 TLEQIQAKL------KKLQAQADVLLARKAQVAVDQIRDLMLKHGLTTADIEAKAKARRA 56 Query: 81 -----AAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 AKY+ TWTG GR P IA K FLI Sbjct: 57 ARGLNGGGKAKAVSSGKAVAKYRDHKTGA---TWTGHGRAPGWIASV----KDRTQFLI 108 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 77 GNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 + A G+ + +P KY TW+G+G P +A K FLI Sbjct: 120 AAVTHAKGSKGQPKGAQPPKYINPKTGA---TWSGRGPAPAWLASV----KDRSKFLI 170 >UniRef50_B4SG34 Histone-like nucleoid-structuring protein H-NS n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SG34_PELPB Length = 101 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPR 93 + + +++ Q+ ER+ + M A I EEL R P Sbjct: 6 EIQAQIADLQKQAQEIINIERKAILEDIKAKMAAYNITMEEL---ERKGKAVKSAPRSPS 62 Query: 94 PAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P KYK ++ + W G+G P+ + + G++++ + + Sbjct: 63 PIKYKKSET----EYWVGRGPKPQWVKGIESNGENIEIYRV 99 >UniRef50_Q46MF0 Histone-like nucleoid-structuring protein H-NS n=3 Tax=Cupriavidus RepID=Q46MF0_RALEJ Length = 589 Score = 51.7 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 12/104 (11%) Query: 34 RVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAG---KKR 90 + + Q ++ A + + + M+ ++ E++ G S K + Sbjct: 491 SSLLAQLASVNAQLEQLRATVPKVVKEIQQWMQEYDLSIEDIAGKPSVKPAARAVPTKTK 550 Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 P +Y+ +TW+G+GR P I GK + FLI Sbjct: 551 AAPPPRYRNPKTG---QTWSGRGRAPAWI------GKRRERFLI 585 >UniRef50_B2JM34 Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Burkholderia phymatum STM815 RepID=B2JM34_BURP8 Length = 191 Score = 51.3 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 40 RREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAP-----RAGKKRQPRP 94 ++ + + + + + T LM + ++ + ++ ++ Sbjct: 12 KKLQAQAEAIVSKKSTAALETIRALMAKHDLTTADIDAHLGHKKRGRPALKSAGVQKKGV 71 Query: 95 AKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSL 129 A+Y TWTG GR P IA A K L Sbjct: 72 ARYIDPKTGA---TWTGHGRAPAWIAGAKDRSKYL 103 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 59 STWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKP 118 + G + + G+ + P+PAKY+ + TW+G+G P Sbjct: 96 AKDRSKYLVAGASVPAATHAAVKGGTGNGQPKGPQPAKYRHPETGA---TWSGRGPAPAW 152 Query: 119 IAQALAEGKSLDDFLI 134 +A K + FLI Sbjct: 153 LAGE----KDRNKFLI 164 >UniRef50_A0KCC6 Histone family protein nucleoid-structuring protein H-NS n=18 Tax=Burkholderia cepacia complex RepID=A0KCC6_BURCH Length = 109 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 21/112 (18%) Query: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAA 82 + LE L + E ++ E+Q ++ + E ++ GI+ +E+L Sbjct: 5 LQELEAQLRDLNIKLSEAKQ---------KEKQAALAAFKEQVELLGISQQEVLSALGYI 55 Query: 83 APRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 R K PAKY ++W+G+G PK + EGK L+ + Sbjct: 56 VQRKRKA----PAKYYDPSTG---RSWSGRGPRPKWL-----EGKDLETLAV 95 >UniRef50_A0Y514 DNA-binding protein, H-NS family n=2 Tax=Alteromonadales RepID=A0Y514_9GAMM Length = 100 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 19/110 (17%) Query: 12 RTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGIN 71 + +RA + S+ LE+ + + ++++ +Q L+L+K G+ Sbjct: 2 KEVRAFIKTASLTELEKAQQLVTDAISKYTQQQKAKQ-----------EVLDLLKEKGLT 50 Query: 72 PEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ 121 E+L S+ KR AKY+ +V+GE WTG+GR PK Sbjct: 51 LEDLQDTSAD-------KRTKVKAKYRI-EVDGEIIEWTGRGRRPKAFEN 92 >UniRef50_B2T9F5 Putative uncharacterized protein n=9 Tax=Burkholderia RepID=B2T9F5_BURPP Length = 87 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 53 ERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQ 112 R+ ++ M GI E L A A Y+ N TW G Sbjct: 16 ARERLVAWIRRRMDEYGITIEALAEAIEADAAATR------AVMYRDAYGN----TWDGH 65 Query: 113 GRTPKPIAQALAEGKSLDDFL 133 G P +A+A+ G+++D F Sbjct: 66 GDKPDWLARAIYAGQNIDHFR 86 >UniRef50_C0DYC0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYC0_EIKCO Length = 97 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 13/108 (12%) Query: 28 EMLEKFRVVTKERREEEEQQQRELA-ERQEKISTWLELMKADGINPEELLGNSSAAAPRA 86 E + ++++ E++ QR LA ER++K++ L +M+ I+ ++ R Sbjct: 2 AARETLDQLLEQKKSLEDRIQRRLASERKKKVNQILAIMRDFEISVADIEAGLKEKQSR- 60 Query: 87 GKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI 134 +Y+ TW G G+ PK I +A +G + FL+ Sbjct: 61 --------PQYRNPKTGA---TWGGVGKRPKWIVEAQEKGIDIKKFLV 97 >UniRef50_B1Z6F8 Putative HNS-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1Z6F8_BURA4 Length = 111 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 33 FRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP 92 ++ + + + E + E Q+ I +E+M INP + + + + G R Sbjct: 16 LEMIKRYQSLKHEIDRIRQRETQQIIRCIVEMMVVYEINPHVV--EVALSKRQRGGGRSK 73 Query: 93 RPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 +Y +TW G+GR P + G+ DFL Sbjct: 74 AIPRYMDPVTG---RTWAGRGRRPLWM-----GGRDPADFL 106 >UniRef50_B0RRY7 Histone-like nucleoid-structuring protein n=13 Tax=Xanthomonas RepID=B0RRY7_XANCB Length = 193 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKAD---------GINPEELLGNS 79 K +++ + ++ EE+++ +E +T + L++ L + Sbjct: 71 AQAKAKLLDELQKLEEQEKTERASEASSAHATIVSLLEQFAGHFNTKQRNDIAAYLGTTT 130 Query: 80 SAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 +A R KY+ G +TW+G+GRTPK A Sbjct: 131 TARKDVVKTGRSEVRPKYELP---GTGETWSGRGRTPKAFAAW 170 >UniRef50_UPI00016A50FD H-NS histone family protein n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A50FD Length = 99 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + + E + + + ++ + ++A GI ++ + + K AKY Sbjct: 11 KAKLEHQLELERCRLFESVVAEIVACVEAFGITERDIFKSERIDTRKRRK------AKYF 64 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 TW+G GR P+ I GK F Sbjct: 65 DPTTG---CTWSGVGREPQWIK-----GKDRSAF 90 >UniRef50_B1XXE8 Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXE8_LEPCP Length = 98 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 6/85 (7%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E++ I LM I+P EL G A A Y+ TW Sbjct: 7 EPEKEAAIRKIRRLMAFWSISPTELRGRGVPAPRPAPAAAAVAR--YRHPVSG---STWD 61 Query: 111 GQGRTPKPIAQALA-EGKSLDDFLI 134 G+G P+ + +AL EG ++D + Sbjct: 62 GEGPQPQWLREALLYEGYTVDQLRV 86 >UniRef50_Q2P0K4 Virulence regulator n=8 Tax=Xanthomonas RepID=Q2P0K4_XANOM Length = 130 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Query: 35 VVTKERREEEEQQQREL-AERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQP- 92 + +E R+ E+++ + A+ E +E++ G + A+ GK + P Sbjct: 16 QLLEELRKLEQEEAQLKYAQTLEAFDQVIEVLTQFGNRFNAKQKSQIASLAMTGKTKGPL 75 Query: 93 -----RPAKYKFTDVNGETKTWTGQGRTPKPIAQA 122 AKY +TW+G+GRTPK Sbjct: 76 SSTGDVVAKYWIPHSG---ETWSGRGRTPKAFKAW 107 >UniRef50_B9B7B2 H-NS histone family protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7B2_9BURK Length = 103 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 17/95 (17%) Query: 39 ERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYK 98 + EE+ + R E + + ++ + EEL K++ +Y Sbjct: 11 KSELEEQIAKYRALVRDEILIEIMLAIEEFHFDAEELF---------PAGKKRKVKPRYF 61 Query: 99 FTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 W+G+GR P+ + GK+ DF Sbjct: 62 DPQSGA---VWSGRGREPRWLK-----GKNRRDFE 88 >UniRef50_A4WW11 Putative uncharacterized protein n=3 Tax=Rhodobacter sphaeroides RepID=A4WW11_RHOS5 Length = 110 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 74 ELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFL 133 ++ + A R + + + + + +W G+GR P A+A+G++ ++ Sbjct: 49 QIARTAKEEAARIKGEAGESGKRVSYFNPTNRSVSWNGRGRCPHWFKVAMAQGRTPEELA 108 >UniRef50_B5EWD6 Putative uncharacterized protein n=1 Tax=Vibrio fischeri MJ11 RepID=B5EWD6_VIBFM Length = 87 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MSVMLQSLNNIRTLRAMAREF-SIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIS 59 M + ++L N R+L AR + + + ++E+ + +R++EEE++Q++ R EK++ Sbjct: 1 MKELKKTLLNQRSLINFARSMLTTEETQLIIERLSIYNTQRKQEEEKKQKDNEIRAEKMN 60 Query: 60 TWLELMKADGINPEELLGNSSAAAPRA 86 +++ ++ +G++ +L + S Sbjct: 61 QFIQQLETEGLSITDLQFHISNRNRAR 87 >UniRef50_B0RPM6 Putative uncharacterized protein n=1 Tax=Xanthomonas campestris pv. campestris str. B100 RepID=B0RPM6_XANCB Length = 165 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 16/117 (13%) Query: 21 FSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLGNSS 80 ++ L + + + + +R E++ + L +L+G++ Sbjct: 1 MALTTLNSIDAEIKQLEARKRLIEKRDADVPKALEVLQKYAQVLTAVQRRQVAKLIGDAV 60 Query: 81 AAA------------PRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 AA G+K P KY+ +TW G+GR P A Sbjct: 61 PAAVQVARKGGGLQAGPKGRKLGPVAPKYRIP----SGETWAGRGRMPIAFTAWFAS 113 >UniRef50_D1TJ24 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJ24_9BURK Length = 82 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 12/70 (17%) Query: 65 MKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALA 124 M+ GI E L + P Y+ W G G P + A Sbjct: 1 MEEFGITLEALAESIQHDV--------DHPPLYRD----ARGNEWNGLGSMPDWLRAARN 48 Query: 125 EGKSLDDFLI 134 G S + F I Sbjct: 49 AGVSPEFFRI 58 >UniRef50_A6GSS8 Putative uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS8_9BURK Length = 106 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 32 KFRVVTKERREEEEQQQRELAE-RQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKR 90 F+ + + +EE +E + + ++ EL+ GI+ E+ A Sbjct: 2 DFQSAINQMKAKEEALAKEKDQLKGAALNQIRELVALFGISSAEIFTTPKKPAAAKSTVD 61 Query: 91 QPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDF 132 K +T + +G+ P + +A+ EGK+ D Sbjct: 62 YSAFEVGKTYSDGVKTYKFASKGKRPDWLKKAIEEGKTAKDL 103 >UniRef50_B4EME8 Putative DNA-binding phage protein n=1 Tax=Burkholderia cenocepacia J2315 RepID=B4EME8_BURCJ Length = 108 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 14/107 (13%) Query: 29 MLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADG----------INPEELLGN 78 M + ++ ++ + + R E + T L G + LG Sbjct: 1 MSKLAELLKQQEELAARIEAAQAEARTEGLQTVATLADQLGEPFAVEVVKMLGERFNLGE 60 Query: 79 SSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAE 125 + + GK PAKY+ D + W+G+GR P +A AE Sbjct: 61 FFRTSRKRGKMVARLPAKYRHPD----GRVWSGKGRAPGWLAGHEAE 103 >UniRef50_Q7WXI1 Putative uncharacterized protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WXI1_RALEH Length = 89 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 109 WTGQGRTPKPIAQALAEGKSLDDFL 133 W GQG P + +A+ G+S++ FL Sbjct: 3 WDGQGEMPDWLRRAVNAGQSVEFFL 27 >UniRef50_A3T2T5 Histone-like protein, HNS family protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T2T5_9RHOB Length = 95 Score = 40.1 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 18/98 (18%) Query: 18 AREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLELMKADGINPEELLG 77 S+ L++M + E ++ E S L + G + EL+G Sbjct: 6 LEALSLGELKKMRKDVAKAISTY---------EDRQKAEARSKVEALAQDLGYSLAELVG 56 Query: 78 NSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRT 115 + R P KY+ ++ + W +GR Sbjct: 57 TET------KTARAPAQPKYRHPNL---SLAWCSRGRQ 85 >UniRef50_B2JWB5 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JWB5_BURP8 Length = 84 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 11/76 (14%) Query: 50 ELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTW 109 + +R ++ M GI +L + + A+Y+ + TW Sbjct: 2 DERKRDSMVANLRRRMAEVGIELNDLAAAIAEDEIKE-------AARYR----SATGDTW 50 Query: 110 TGQGRTPKPIAQALAE 125 +G G P+ + QA++ Sbjct: 51 SGDGEMPQWLKQAISA 66 >UniRef50_Q8DF50 DNA-binding protein H-NS n=1 Tax=Vibrio vulnificus RepID=Q8DF50_VIBVU Length = 167 Score = 38.6 bits (88), Expect = 0.061, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 17/139 (12%) Query: 2 SVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTW 61 + LQ+L L D ++ + + ++E++E ++++ E + I + Sbjct: 7 NEQLQALLQSPDLAEKLASLGGDAVQAFTKAATEAVQVQKEKQEAERKQKIE--DLIDSI 64 Query: 62 LELMKADGINPEELL--------------GNSSAAAPRAGKKRQPRPAKYKFTDVNGETK 107 ++ + I+ EE S+ + +K P +Y+ ++ E Sbjct: 65 ERDLEEESISKEEFALAIAARFKVSVAARTRSTKTSNNKERKNAPTRPQYRIV-LDDEEH 123 Query: 108 TWTGQGRTPKPIAQALAEG 126 W+G+GR+P+ A G Sbjct: 124 VWSGKGRSPEVFRAAKESG 142 >UniRef50_A4STY6 Histone-like nucleoid-structuring protein H-NS n=9 Tax=Gammaproteobacteria RepID=A4STY6_AERS4 Length = 154 Score = 38.2 bits (87), Expect = 0.082, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 12/117 (10%) Query: 4 MLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKISTWLE 63 ++ L + + R + E++E+ V E +++ + R+ + + Sbjct: 34 VISELKRKHRVLILMRGIPLHEFREIIERLEAVYSELESDQKNRDELDKIRRAEAEKIII 93 Query: 64 LMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIA 120 M A G++ + L + K + W+GQGR P Sbjct: 94 DMNARGVDIQYLNEVIVGKSESDNAKYIK------------DGVPWSGQGRRPDVFK 138 >UniRef50_B4S9M9 Putative uncharacterized protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S9M9_PROA2 Length = 87 Score = 38.2 bits (87), Expect = 0.084, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 51 LAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDVNGETKTWT 110 E+ + I+ M ++ ++ G A A ++P+ +Y W Sbjct: 4 QREKVKVIAGIRSKMAEFDLSESDIFG----GAKPASGSKKPKMIRYYDPK---RGIKWA 56 Query: 111 GQGRTPKPIAQALAEGKSLDDFL 133 G+GR P + E LD F Sbjct: 57 GRGRKPPEFEELSQE--ELDRFR 77 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.129 0.353 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 628,990,430 Number of Sequences: 3077464 Number of extensions: 20583235 Number of successful extensions: 212972 Number of sequences better than 1.0e-01: 231 Number of HSP's better than 0.1 without gapping: 332 Number of HSP's successfully gapped in prelim test: 288 Number of HSP's that attempted gapping in prelim test: 211661 Number of HSP's gapped (non-prelim): 1111 length of query: 134 length of database: 1,040,396,356 effective HSP length: 99 effective length of query: 35 effective length of database: 735,727,420 effective search space: 25750459700 effective search space used: 25750459700 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 87 (38.2 bits)