BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (528 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77743 Propionate catabolism operon regulatory protein ... 1078 0.0 UniRef50_P74839 Propionate catabolism operon regulatory protein ... 843 0.0 UniRef50_Q2P7A6 Propionate catabolism regulatory protein n=12 Ta... 424 e-117 UniRef50_A6GNB9 Propionate catabolism operon regulatory protein ... 375 e-102 UniRef50_B2I240 Transcriptional regulator containing PAS, AAA-ty... 293 8e-78 UniRef50_A4ACX8 Propionate catabolism operon regulatory protein ... 293 1e-77 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 289 1e-76 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 281 4e-74 UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and A... 281 4e-74 UniRef50_C5CLY6 Proprionate catabolism activator, Fis family n=1... 280 8e-74 UniRef50_B4UAE7 Proprionate catabolism activator, Fis family n=5... 276 2e-72 UniRef50_B2TBW4 Proprionate catabolism activator, Fis family n=7... 274 8e-72 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 271 4e-71 UniRef50_Q24RU7 Putative uncharacterized protein n=2 Tax=Desulfi... 271 6e-71 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 270 7e-71 UniRef50_Q2T371 Propionate catabolism operon regulatory protein ... 270 1e-70 UniRef50_A8MEE7 Putative sigma54 specific transcriptional regula... 270 1e-70 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 266 2e-69 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 266 2e-69 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 265 2e-69 UniRef50_P26047 Signal-transduction and transcriptional-control ... 264 5e-69 UniRef50_A8RXK4 Putative uncharacterized protein n=1 Tax=Clostri... 264 5e-69 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 264 6e-69 UniRef50_B7V9N6 Propionate catabolism operon regulator prpR n=7 ... 263 9e-69 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 263 1e-68 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 263 1e-68 UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostri... 261 4e-68 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 261 4e-68 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 261 5e-68 UniRef50_B1EKH8 Propionate catabolism operon regulatory protein ... 259 1e-67 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 259 3e-67 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 258 3e-67 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 258 4e-67 UniRef50_A8MEG8 Putative sigma54 specific transcriptional regula... 258 4e-67 UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 T... 256 1e-66 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 256 2e-66 UniRef50_Q0KAG6 Propionate catabolism activator n=5 Tax=Cupriavi... 256 2e-66 UniRef50_A9BWJ6 Proprionate catabolism activator, Fis family n=3... 255 3e-66 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 254 4e-66 UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional r... 254 6e-66 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 253 2e-65 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 252 2e-65 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 252 3e-65 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 252 3e-65 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 251 4e-65 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 251 4e-65 UniRef50_A8MEN4 Putative sigma54 specific transcriptional regula... 251 5e-65 UniRef50_A8RUM4 Putative uncharacterized protein n=1 Tax=Clostri... 251 7e-65 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 250 8e-65 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 249 1e-64 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 249 2e-64 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 249 3e-64 UniRef50_C5EVL5 PAS:Helix-turn-helix motif-containing protein n=... 249 3e-64 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 248 3e-64 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 248 3e-64 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 248 4e-64 UniRef50_B6WVJ9 Putative uncharacterized protein n=1 Tax=Desulfo... 248 4e-64 UniRef50_B7VNT5 Sigma-54 dependent response regulator n=10 Tax=V... 248 4e-64 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 248 5e-64 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 248 5e-64 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 248 6e-64 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 247 6e-64 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 247 7e-64 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 247 8e-64 UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2... 246 1e-63 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 246 1e-63 UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis ... 246 2e-63 UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional r... 246 2e-63 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 245 3e-63 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 245 4e-63 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 245 4e-63 UniRef50_B5XN53 Sigma-54 dependent transcriptional regulator n=2... 244 4e-63 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 244 4e-63 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 244 4e-63 UniRef50_Q7MKR6 Sigma-54 dependent response regulator n=66 Tax=G... 244 6e-63 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 244 6e-63 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 244 7e-63 UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional r... 243 9e-63 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 243 1e-62 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 243 1e-62 UniRef50_B2A7R2 Putative sigma54 specific transcriptional regula... 243 1e-62 UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearot... 243 1e-62 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 243 1e-62 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 243 1e-62 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 243 2e-62 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 243 2e-62 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 242 2e-62 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 242 2e-62 UniRef50_C5EGH7 Sigma-54 dependent transcriptional regulator n=1... 242 3e-62 UniRef50_A3EU11 Putative sigma54 specific transcriptional regula... 242 3e-62 UniRef50_Q1JW16 Sigma54 specific transcriptional regulator, Fis ... 241 4e-62 UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional r... 241 4e-62 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 241 5e-62 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 241 5e-62 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 241 5e-62 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 241 6e-62 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 241 6e-62 UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional... 241 7e-62 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 241 7e-62 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 240 8e-62 UniRef50_C5BFS1 Propionate catabolism operon regulatory protein ... 240 1e-61 UniRef50_C0ZAD0 Putative transcriptional regulator n=1 Tax=Brevi... 240 1e-61 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 240 1e-61 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 240 1e-61 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_Q1DD25 Sigma-54 dependent DNA-binding response regulato... 239 2e-61 UniRef50_UPI0001BC60A6 putative PAS/PAC sensor protein n=1 Tax=F... 239 2e-61 UniRef50_C9KLP4 Nitrogen regulation protein NR n=1 Tax=Mitsuokel... 239 2e-61 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 239 2e-61 UniRef50_C4LCM0 Sigma54 specific transcriptional regulator, Fis ... 239 2e-61 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 239 2e-61 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 239 2e-61 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 239 2e-61 UniRef50_C6PY15 Sigma54 specific transcriptional regulator, Fis ... 239 3e-61 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 239 3e-61 UniRef50_D0LHM6 Sigma54 specific transcriptional regulator, Fis ... 239 3e-61 UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostri... 239 3e-61 UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevi... 238 3e-61 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 238 3e-61 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 238 4e-61 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 238 4e-61 UniRef50_C0CT34 Putative uncharacterized protein n=1 Tax=Clostri... 238 5e-61 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 238 5e-61 UniRef50_A6TUL7 Sigma54 specific transcriptional regulator, Fis ... 238 5e-61 UniRef50_A8S521 Putative uncharacterized protein n=1 Tax=Clostri... 238 5e-61 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 238 5e-61 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 238 5e-61 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 238 5e-61 UniRef50_C5AKI5 Two component, sigma54 specific, transcriptional... 238 6e-61 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 238 6e-61 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 238 6e-61 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 237 6e-61 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 237 1e-60 UniRef50_C1SMK9 Response regulator with CheY-like receiver, AAA-... 237 1e-60 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 237 1e-60 UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-c... 236 1e-60 UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis ... 236 1e-60 UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=... 236 1e-60 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 236 1e-60 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 236 1e-60 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 236 1e-60 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 236 2e-60 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 236 2e-60 UniRef50_Q0HDD1 Two component, sigma54 specific, transcriptional... 236 2e-60 UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional... 236 2e-60 UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1... 236 2e-60 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 236 2e-60 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 236 2e-60 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 236 2e-60 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 236 2e-60 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 236 2e-60 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 235 2e-60 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 235 2e-60 UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulato... 235 2e-60 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 235 3e-60 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 235 3e-60 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 235 3e-60 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 235 3e-60 UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus... 235 3e-60 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 235 3e-60 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 234 4e-60 UniRef50_Q183V3 Putative sigma-54 dependent regulatory protein n... 234 4e-60 UniRef50_B6WRJ0 Putative uncharacterized protein n=1 Tax=Desulfo... 234 4e-60 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 234 5e-60 UniRef50_UPI000197326E probable transcriptional regulator n=1 Ta... 234 7e-60 UniRef50_Q6FC38 Putative sigma-54 dependent transcriptional regu... 234 8e-60 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 234 8e-60 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 234 8e-60 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 234 8e-60 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 234 8e-60 UniRef50_C6JIT1 Sigma54 specific transcriptional regulator (Frag... 234 8e-60 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 233 9e-60 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 233 1e-59 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 233 1e-59 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 233 1e-59 UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhod... 233 1e-59 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 233 2e-59 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 233 2e-59 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 233 2e-59 UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium ... 233 2e-59 UniRef50_Q188I7 Sigma-54-dependent transcriptional regulator n=4... 233 2e-59 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 233 2e-59 UniRef50_O31551 Acetoin dehydrogenase operon transcriptional act... 233 2e-59 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 232 2e-59 UniRef50_Q181W8 Putative sigma-54 interacting regulatory protein... 232 2e-59 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 232 2e-59 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 232 3e-59 UniRef50_Q1H0A5 Sigma54 specific transcriptional regulator, Fis ... 232 3e-59 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 232 3e-59 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 232 3e-59 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 232 3e-59 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 232 3e-59 UniRef50_Q18CQ7 Putative sigma-54-dependent transcriptional regu... 232 3e-59 UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fi... 232 3e-59 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 231 4e-59 UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis ... 231 4e-59 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 231 4e-59 UniRef50_C2X5C8 Carbamoyl-phosphate synthase, large subunit n=4 ... 231 4e-59 UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n... 231 4e-59 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 231 4e-59 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 231 4e-59 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 231 4e-59 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 231 4e-59 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 231 4e-59 UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales R... 231 4e-59 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 231 4e-59 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 231 5e-59 UniRef50_C0Z891 Probable transcriptional regulator n=1 Tax=Brevi... 231 5e-59 UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum... 231 5e-59 UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional... 231 6e-59 UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional r... 231 6e-59 UniRef50_C0ZGM5 Probable transcriptional regulator n=1 Tax=Brevi... 231 6e-59 UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fi... 231 6e-59 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 231 7e-59 UniRef50_B7H394 Nitrogen assimilation regulatory protein n=11 Ta... 231 7e-59 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 231 7e-59 UniRef50_A6B3R9 Acetoacetate metabolism regulatory protein AtoC ... 231 7e-59 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 230 8e-59 UniRef50_A5CZF6 Transcriptional regulator n=1 Tax=Pelotomaculum ... 230 8e-59 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 230 8e-59 UniRef50_B5Q0I7 Sigma-54 interaction domain protein n=40 Tax=Sal... 230 8e-59 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 230 9e-59 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 230 1e-58 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 230 1e-58 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 230 1e-58 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 230 1e-58 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 230 1e-58 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 230 1e-58 UniRef50_D0ZE77 Putative uncharacterized protein n=1 Tax=Edwards... 230 1e-58 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 229 1e-58 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 229 1e-58 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 229 2e-58 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 229 2e-58 UniRef50_B9R2I1 Sigma-54 interaction domain family n=1 Tax=Labre... 229 2e-58 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 229 2e-58 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 229 2e-58 UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis ... 229 2e-58 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 229 2e-58 UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional r... 229 2e-58 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 229 2e-58 UniRef50_Q24UK7 Putative uncharacterized protein n=2 Tax=Desulfi... 229 2e-58 UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, N... 229 2e-58 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 229 2e-58 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 229 3e-58 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 229 3e-58 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 228 3e-58 UniRef50_D2UGQ5 Probable two-component regulatory system regulat... 228 3e-58 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 228 3e-58 UniRef50_C6PZ60 Putative sigma54 specific transcriptional regula... 228 4e-58 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 228 4e-58 >UniRef50_P77743 Propionate catabolism operon regulatory protein n=50 Tax=Proteobacteria RepID=PRPR_ECOLI Length = 528 Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/528 (100%), Positives = 528/528 (100%) Query: 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE 60 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE Sbjct: 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE 60 Query: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV Sbjct: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 Query: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA Sbjct: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 Query: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA Sbjct: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 Query: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE Sbjct: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 Query: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD Sbjct: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 Query: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL Sbjct: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 Query: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP Sbjct: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS Sbjct: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 >UniRef50_P74839 Propionate catabolism operon regulatory protein n=46 Tax=Enterobacteriaceae RepID=PRPR_SALTY Length = 541 Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/532 (79%), Positives = 457/532 (85%), Gaps = 14/532 (2%) Query: 5 PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDA 64 PR N DKPVIWTVSVTRLFELFRDISLEFDHLA ITPIQLGFEKAVTYIRKKLA ERCDA Sbjct: 8 PRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFEKAVTYIRKKLATERCDA 67 Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK 124 IIAAGSNGAYLKSRLS+PVILIKPSG+DVLQALAKAGKLTSSIG+VTYQETIPAL+AFQK Sbjct: 68 IIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAKAGKLTSSIGIVTYQETIPALLAFQK 127 Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 TF+LRL+QRSY+TEEDARGQINELKANG EAVVGAGLITDLAEEAGMT IFIYSAATVRQ Sbjct: 128 TFHLRLEQRSYVTEEDARGQINELKANGIEAVVGAGLITDLAEEAGMTAIFIYSAATVRQ 187 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 AF DALDMTR++ R + L+TRY LGD+ GQSPQMEQ+RQTI LYARS AAVLI Sbjct: 188 AFHDALDMTRLTRRQRVDYPSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLI 247 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 +GETGTGKELAAQAIH+ +F R RQ K S PFVAVNCGAI ESLLEAELFGYEEGAFT Sbjct: 248 QGETGTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFGYEEGAFT 307 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK VTRVGGHQP+PVDVRVI Sbjct: 308 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVI 367 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 SATHC+L+ ++ QGRFR DLFYRLSILRL LPPLRER ADILPLAESFLK SLAA+ PF Sbjct: 368 SATHCDLDREIMQGRFRPDLFYRLSILRLTLPPLRERQADILPLAESFLKQSLAAMEIPF 427 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR 484 + ++R GL + +LL + WPGNIRELRNMMERLALFLSV+P P L QFM+ LLPEL Sbjct: 428 TESIRHGLTQCQPLLLAWRWPGNIRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMV 487 Query: 485 ESAKTPAPRLLTP--------QQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A+ LTP Q L +F GDKTAAA YLGISRTT WRRLK+ Sbjct: 488 NTAE------LTPSTVDANALQDVLARFKGDKTAAARYLGISRTTLWRRLKA 533 >UniRef50_Q2P7A6 Propionate catabolism regulatory protein n=12 Tax=Xanthomonadaceae RepID=Q2P7A6_XANOM Length = 581 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/532 (46%), Positives = 341/532 (64%), Gaps = 35/532 (6%) Query: 12 PVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSN 71 PVIWTVSV+RL L D+ EFD A I I LGF +AV I +L ERCDA++A GSN Sbjct: 64 PVIWTVSVSRLTGLLADVIPEFDQRARIEQINLGFAEAVEVIGLRLRRERCDALVAGGSN 123 Query: 72 GAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLD 131 AYL+SRL++P I+ +G+D+++ALA+A ++ IGVVT+ +P+ AFQ +F+L ++ Sbjct: 124 AAYLRSRLALPFAHIQATGFDLMEALARARRIAPRIGVVTHASDVPSFRAFQHSFDLDIE 183 Query: 132 QRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 191 R ++T EDAR I +L+A+G + +VG G+ D AE+AG+ G+ +YSA +VRQA A+ Sbjct: 184 HRRFVTAEDARDCIADLRASGIQVIVGTGMAIDFAEQAGLPGVLLYSADSVRQALEQAIA 243 Query: 192 MTRMSLRHNTHD-ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 + +T D A R+A R +LG+ M QVR+ + LYA + VLI GETGT Sbjct: 244 LGAAP---STDDLAGRSATRRARRADALLGEDSAMLQVRELVQLYAPHAGTVLISGETGT 300 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL A+ +H R+G+ FVA+NCGAI+ESLLEAELFGY +GAFTG+RRGG Sbjct: 301 GKELVARQLHAG-----SRRRGR----FVAINCGAISESLLEAELFGYSDGAFTGARRGG 351 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 GL E A GTLFLDEIGE+P+ LQTRLLRVLEE EV RVG PV VDVRV++A+ Sbjct: 352 HTGLIEAAQDGTLFLDEIGELPMALQTRLLRVLEEHEVLRVGATVPVAVDVRVVAASLQE 411 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 L++ ++QGRFRRDLFYRL+ LR+ LPPLR R +I L + + L +++P S A Q Sbjct: 412 LQQLVEQGRFRRDLFYRLAALRIALPPLRSRHDEIALLLAHYFQ-QLGNIASPLSPAALQ 470 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL-------- 482 LQ + WPGN+RELRN++ERL + +P L+ + ++ PEL Sbjct: 471 RLQ-------QHTWPGNVRELRNLVERLCIHWKSQPHDSLSLEQLERWTPELFDTHFGNR 523 Query: 483 --ARESAKTPAPRLLTP----QQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 RE A RL + AL++ NG++ AA LG+SRTT WR +++ Sbjct: 524 EAPRELADLATSRLQVTATAVRAALDRANGNRALAAQALGVSRTTLWRWMQA 575 >UniRef50_A6GNB9 Propionate catabolism operon regulatory protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNB9_9BURK Length = 525 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/536 (40%), Positives = 326/536 (60%), Gaps = 39/536 (7%) Query: 18 SVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKS 77 S++ L R+I+ ++ ANI + +E A+ Y R + + D IAAGSNGA+L++ Sbjct: 3 SISALAGTLREIARDYAGSANIELVPKAYEDALAYARNRYYTDTADVFIAAGSNGAFLQN 62 Query: 78 RLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYIT 137 +L P+++I+ G+DV+QALA A K ++++G+V+Y+ + L F + F++ L+ R+Y T Sbjct: 63 QLEAPLVIIRTDGFDVMQALASARKASAAVGLVSYEHSFEELEQFARAFDVPLNTRTYRT 122 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 EDAR + EL G + VVG+GL+T++A+E G+ I IYS V +AF +A+ R++ Sbjct: 123 PEDARRAVRELAQLGVKVVVGSGLVTEIAQEMGLEAILIYSRQGVVKAFEEAI---RLAS 179 Query: 198 RHNTHDATRNA-LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + RN+ T + D++G S +E++R TI L +VLI+GETG GKEL A Sbjct: 180 AKASGGVRRNSQAYTYHNEQDLIGNSKAVEKLRNTIRLCGSIDFSVLIQGETGVGKELVA 239 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 Q+IH R GK PFVA+NC ++ ESLLE+ELFGYEEGAF+G+ +GGRAG+FE Sbjct: 240 QSIHT-----SSPRAGK---PFVAINCASLTESLLESELFGYEEGAFSGAVKGGRAGMFE 291 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGT+FLDEIG+MPL QTRLLR+LE+ V R+G P VD R+++A++ NL++ ++ Sbjct: 292 SAQGGTVFLDEIGDMPLAFQTRLLRILEDSTVRRIGSASPRKVDFRLLAASNVNLQQAVE 351 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +GRFR DL++RL+ + + +PPLRER DI LA FL+ + +S + + L + Sbjct: 352 EGRFREDLYFRLNEMLIHIPPLRERTEDIAELAGYFLRTTPVRVS---KSRFDEFLHLAL 408 Query: 437 TVLLHYDWPGNIRELRNMMERLALF------LSVEPT--PD---------LTPQFMQLL- 478 +L WPGNIR+L+N+ R A+ LS PT PD L+P ++ L Sbjct: 409 PILQSLPWPGNIRQLKNVCRRAAVMMLQESDLSSWPTWFPDLMVDSQNSALSPGQLKDLP 468 Query: 479 -----LPELARESAKTPA-PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + LA ++ P R ++AL+ G+ A LGISR+T WR KS Sbjct: 469 GPIDSMNALALAYSRAPKHGRAEIVREALKVVGGEVNKVAEGLGISRSTVWRLGKS 524 >UniRef50_B2I240 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domain n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I240_ACIBC Length = 627 Score = 293 bits (751), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 155/329 (47%), Positives = 209/329 (63%), Gaps = 27/329 (8%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 TRY +L Q+P +Q+ + YA++ + +LI GE+GTGKE+ AQ+IH Y +R+ Sbjct: 312 FNTRYTFDQILTQNPNFQQIIKLSKAYAKTDSTILITGESGTGKEVLAQSIHN-YSSRYK 370 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 A PFVA+NC + ESLLE+ELFGYEEGAFTG+++ GR GL E AH GTLFLDEI Sbjct: 371 A-------PFVAINCASFPESLLESELFGYEEGAFTGAKKNGRIGLIEAAHTGTLFLDEI 423 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 G+MPL LQTR LRVL+E+++ R+G +D+RVI+ATH +LEE ++ G FR DL+YRL Sbjct: 424 GDMPLHLQTRFLRVLQERQINRLGSVVSHHLDIRVIAATHADLEELVRNGSFRADLYYRL 483 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 +ILR+ P L+ER DIL LA SFL+ + L + LHY WPGNI Sbjct: 484 NILRVYTPSLKERKEDILYLANSFLE--------KYRKTLNDLPSILQKAFLHYSWPGNI 535 Query: 449 RELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR-ESAKTPAP---------RLLTPQ 498 REL N++ER+ + L ++ LTP+F++ LPEL + ++ T P L + Sbjct: 536 RELENIVERINVLLQLDHEI-LTPEFLKQQLPELFQSQNHHTTQPLLKEVKVNQELSLIE 594 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q L + GD AA LGISRTT WRR+K Sbjct: 595 QTLAEVEGDLDLAAQKLGISRTTLWRRMK 623 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 50 VTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGV 109 V + + L C ++ G+ ++L+ +L++ + +I+ +DV+QA++ K I + Sbjct: 48 VQDVAQSLVENGCQILLCTGATASFLQKKLNIDIQVIRTGTFDVIQAISNL-KQYKRIAL 106 Query: 110 VTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEA 169 V T+ L + F L + Q +Y + DA+ I+ +K G +A++G+ + +LA Sbjct: 107 VGNTSTVD-LENYSDIFALDIQQFNYDSYLDAKKTIHLIKNQGFDAIIGSPVAVELALNE 165 Query: 170 GMTGIFIYSAATVRQAFSDAL 190 + G S +++ +AL Sbjct: 166 NLVGHLAISVPSLKDLLQNAL 186 >UniRef50_A4ACX8 Propionate catabolism operon regulatory protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4ACX8_9GAMM Length = 533 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 191/491 (38%), Positives = 269/491 (54%), Gaps = 62/491 (12%) Query: 63 DAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPA---- 118 D + +AGSN A+L++ L +PVI + D++ A+A+A ++ + V TY + Sbjct: 55 DVVASAGSNAAFLQNALKLPVIAQPVTDTDIVDAVARARRIGQRVHVFTYAAKAESEGRL 114 Query: 119 LVAFQKTFNLRLDQRSYITEEDARGQINELKANG-TEAVVGAGLITDLAEEAGMTGIFIY 177 A L SY T ++A ++ + A G T+ VVG I +LA G+ + IY Sbjct: 115 FQALPSLLGESLAHDSYTTTDEASEKLLAMAAAGNTDVVVGPSYICELAARRGLPAVLIY 174 Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRT--RYVLGDMLGQSPQMEQVRQTILLY 235 S + R +AL R D R++ + R+V+ SPQM +V + Y Sbjct: 175 SRESARAMLDEALRQAR------ARDPGRDSGGSPGRFVI-----DSPQMSRVAELARTY 223 Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A SAAVL++GE+GTGKE A+ IH+ D R G VA+NCG+I L E+EL Sbjct: 224 ALGSAAVLLQGESGTGKEHIAREIHQA----SDYRDGA----LVAINCGSIPNELFESEL 275 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGY +GAFT SRRGGR GL E A+GG L+LDE+GEMPL Q +LLRVL+E+ V VGG + Sbjct: 276 FGYVDGAFTSSRRGGRVGLVEQANGGVLYLDEVGEMPLAQQVKLLRVLQERSVRPVGGTR 335 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK- 414 + +D +VI+AT+C+L+E ++ G+FR DL+YRL++ L+LPPLRER D+ +AE +L Sbjct: 336 ELSLDFKVIAATNCDLQEAVEAGQFRDDLYYRLNVFTLRLPPLRERPEDVSAIAEHYLAE 395 Query: 415 ------------VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 +A L APF Y WPGN+REL+N ERLA+ Sbjct: 396 YARQYDVELDVPTLMARLKAPFE---------------QYRWPGNVRELQNFAERLAVNA 440 Query: 463 SVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ------ALEKFNGDKTAAANYLG 516 + + + L + R A TPA LL Q+ A+ + GDKTA + LG Sbjct: 441 AHGASIEELRLEELLPELSVPRGEA-TPAG-LLKEQECRAIADAMRRLGGDKTAVSKELG 498 Query: 517 ISRTTFWRRLK 527 IS TT WRRLK Sbjct: 499 ISPTTLWRRLK 509 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 162/320 (50%), Positives = 207/320 (64%), Gaps = 17/320 (5%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +Y +++G+SP + +T YA++ VLI GE+G GKEL AQAIH E Sbjct: 325 AKYQFAELIGRSPPFLRAVRTARRYAQTDLTVLIAGESGVGKELFAQAIHNE-------- 376 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + PFVAVNC + ESLLE+ELFGYEEGAFTGSRRGG+ GLFE AH GTLFLDEIG+ Sbjct: 377 SRRADRPFVAVNCASFPESLLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTLFLDEIGD 436 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPLPLQ+RLLRVL+E+EVTR+G +PVDVR+I+ATH L + + Q RFR+DL+YR++ Sbjct: 437 MPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQDLYYRINT 496 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE-TVLLHYDWPGNIR 449 LRL++PPLRER DI PL E+ + L L AP AA GL A L Y WPGN+R Sbjct: 497 LRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAA---GLVAPWLPRLRRYAWPGNVR 553 Query: 450 ELRNMMERLALFLSVEP-TPDLTPQFMQLLLPELARESAKTPAPRLLTPQ----QALEKF 504 EL N+ ER+A+FL P D+ ++ PEL A A + + +ALE Sbjct: 554 ELENISERMAVFLMQYPHAADVDHDALRHDCPELFEAGAAVAADEGRSQRDRALRALEAC 613 Query: 505 NGDKTAAANYLGISRTTFWR 524 G++ AA LGISR+T WR Sbjct: 614 GGNRQEAARRLGISRSTLWR 633 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 1/197 (0%) Query: 1 MAHP-PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLAN 59 M++P P D P + +S ++ E + E+ A+I + F A+ + +L Sbjct: 1 MSYPDPPARADLPRLCFLSYRQIREFAMPVVAEYTGRAHIEVVDGTFGGALAIAQDRLDR 60 Query: 60 ERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPAL 119 DA ++AGSN + L++ L PV I+ G+D+LQAL +A ++ +GVV Y TIP L Sbjct: 61 GLVDAFVSAGSNASILRAGLQAPVATIQLGGFDLLQALIQARRIADRVGVVMYGRTIPEL 120 Query: 120 VAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSA 179 A + N+ + Q +Y T +DAR + +L+ + +VG+ L+ +LAE+AG+ G+ YS Sbjct: 121 DAVKDLLNIEIVQHAYQTPDDARQRFEQLRRENFQVIVGSSLVVELAEQAGLHGLLAYSL 180 Query: 180 ATVRQAFSDALDMTRMS 196 A+VR+ F DA+++ R++ Sbjct: 181 ASVRKGFEDAIELARVA 197 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 159/369 (43%), Positives = 223/369 (60%), Gaps = 37/369 (10%) Query: 173 GIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTI 232 G I + AT++ A A+ ++RH + L + ++G++ ++ Sbjct: 277 GELIGAVATIQDA--QAVQKAEKAIRHRVYS---KGLLAKATFEHIIGKNSTFMKLIDKA 331 Query: 233 LLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 292 YA++ A +LI GETGTGKEL AQ+IH + HPFVAVNC A+ ES+LE Sbjct: 332 QHYAQTDATILIRGETGTGKELFAQSIHNA--------SNRNRHPFVAVNCAALPESILE 383 Query: 293 AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVG 352 +ELFGYEEGAFTG+R+GG+ GLFE+AH GT+FLDEIGEM LPLQ+RLLRVL+EKEV R+G Sbjct: 384 SELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLG 443 Query: 353 GHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESF 412 +P+DVR+I+AT+ +L+ ++ G FR+DL+YRL++L ++LPPLRER+ D+ L F Sbjct: 444 SDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRLNVLSIELPPLRERLDDLPDLFRFF 503 Query: 413 L---KVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD 469 L K+ + S L VL H++WPGNIREL N+ ER+++ L T D Sbjct: 504 LKNYKLDKQLIEKVLSIML--------PVLCHHNWPGNIRELENIAERVSVLLKAHVTMD 555 Query: 470 ---------LTPQFMQLL-LPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISR 519 L +++L +L +E R+L Q L + G KT AA LGISR Sbjct: 556 EVLAEVKKELFGSHIEILDSTDLTKEVENWERQRIL---QVLREVRGSKTKAAALLGISR 612 Query: 520 TTFWRRLKS 528 TT WR++K Sbjct: 613 TTLWRKIKD 621 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 79/132 (59%), Gaps = 1/132 (0%) Query: 62 CDAIIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 D I+A+G+N ++ + LS+PV+ IK +G+D++ AL A ++ V++YQE IP L Sbjct: 47 ADVIVASGANATAIEEQGLSIPVVRIKVTGFDLVNALWLAKRMNRQAVVMSYQEPIPQLE 106 Query: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 F+ F + L Q +Y DA+ ++ + +G ++GA L+ +L E G IFIYS + Sbjct: 107 QFRDLFRVDLMQEAYDGVHDAQEKLLRILGSGKSVIIGASLVNELTERMGGHSIFIYSRS 166 Query: 181 TVRQAFSDALDM 192 ++R A A+++ Sbjct: 167 SIRLALETAVEL 178 >UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and AAA domains) n=1 Tax=Clostridium acetobutylicum RepID=Q97LU5_CLOAB Length = 627 Score = 281 bits (719), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 144/358 (40%), Positives = 214/358 (59%), Gaps = 30/358 (8%) Query: 182 VRQAFSDALDMTRMS--LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSS 239 V F D + + +R H+ +Y D+L Q M ++++ LLY+++ Sbjct: 285 VVNTFEDVTKIQTLEKIIRKKIHEK---GFVAKYNFDDILTQDKNMIELKKLALLYSKTD 341 Query: 240 AAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYE 299 +++LI+GE+G+GKEL AQ+IH +K+ PFVA+NC A+ E LLE+ELFGYE Sbjct: 342 SSILIQGESGSGKELFAQSIHNS--------SPRKNGPFVAINCAALPEHLLESELFGYE 393 Query: 300 EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 359 G+FTG+++ G+ GLFE+AH GT+FLDEIGE+ PLQ +LLRVLEEKE+ +GG + +PV Sbjct: 394 GGSFTGAKKEGKQGLFELAHNGTIFLDEIGELSKPLQAQLLRVLEEKEIMHIGGDKIIPV 453 Query: 360 DVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAA 419 D+R+IS+T+ NL ++ G FR DL+YRL++ L LPPLRER DI LAE FL+ Sbjct: 454 DIRIISSTNRNLLNSIENGTFREDLYYRLNVFNLTLPPLRERGKDIEILAEHFLEN---- 509 Query: 420 LSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLL 479 + FS+ + L L+ Y+WPGN REL N+MER++LF+ T + + +++ Sbjct: 510 -THNFSSNRSKILNQITPFLMAYNWPGNTRELSNVMERISLFIENSMTINWSQVLYKVVH 568 Query: 480 PELARESAKTPAPRLLTPQQA------------LEKFNGDKTAAANYLGISRTTFWRR 525 E ++ P LT ++ LE+++ D A L I RTT WR+ Sbjct: 569 KEKIEDTLTLKVPYNLTMKEIIELTEKRVIHSLLERYDNDHNRVAEILNIGRTTLWRK 626 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 11/202 (5%) Query: 60 ERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPAL 119 + DAII+ G+ Y+K +S+P I IK + +D ++A+ A + + + ++ Y+ +I Sbjct: 48 DEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDK 107 Query: 120 VAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSA 179 + +++ + + +E++ I+++K + VV +TD A + G+ G I S Sbjct: 108 HEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINSG 167 Query: 180 -ATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS 238 ++R+A +AL++ + + R + R + +L D +G+ + + I+ Y S Sbjct: 168 EESLRRAIEEALNLIEVR-----NIELRRSARFKAIL-DAIGEGIIVTDQFKKIITYNNS 221 Query: 239 SAAVLIEGETGTGKELAAQAIH 260 + T TG +L ++I Sbjct: 222 INKIF----TKTGSKLLGKSIQ 239 >UniRef50_C5CLY6 Proprionate catabolism activator, Fis family n=1 Tax=Variovorax paradoxus S110 RepID=C5CLY6_VARPS Length = 659 Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 164/322 (50%), Positives = 206/322 (63%), Gaps = 16/322 (4%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 R+ +++GQSP + QT +AR+ VLI GE+G GKEL AQ+IH E R Sbjct: 339 RHRFANLIGQSPAFLRAVQTARRFARTDLTVLIAGESGVGKELFAQSIHNE-----SVRA 393 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 G+ PFVAVNC A E+LLE+ELFGYEEGAFTGSRRGG+ GLFE AH GTLFLDEIG+M Sbjct: 394 GR---PFVAVNCAAFPEALLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTLFLDEIGDM 450 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL LQTRLLRVL+E+E+TR+G +PVDVRVI+ATH L + + + RFR+DLFYRL+ L Sbjct: 451 PLQLQTRLLRVLQEREITRLGATAAIPVDVRVIAATHQPLNDMIAERRFRQDLFYRLNTL 510 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 RL LPPLRER DI PLAE+ + L L + L L YDWPGNIREL Sbjct: 511 RLPLPPLRERREDIAPLAEAQVGRCLQRLGTRLDPV--RALAPLLPRLRAYDWPGNIREL 568 Query: 452 RNMMERLALFL-SVEPTPDLTPQFMQLLLPEL-----ARESAKTPAPRLLTPQQALEKFN 505 N+ ER+A+FL + D+ ++ LPEL A E A AL+ Sbjct: 569 ENLGERIAVFLMQFDHLEDVRYDELRHDLPELFADTAASEVADDTGLSAARVAAALQAQG 628 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G++ AAA LG+SR+T WR ++ Sbjct: 629 GNRQAAARQLGVSRSTLWRWMR 650 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 102/165 (61%) Query: 32 EFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGY 91 E+ A I + F A+ R +L DA ++AGSN + L++ L PV I+ SG+ Sbjct: 46 EYTGRAEIEVVDGTFGDALAIARDRLERGLVDAFVSAGSNASILRAGLQAPVGTIQLSGF 105 Query: 92 DVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKAN 151 D+LQAL KA +++S +GVV Y +TIP L + N+ + Q +Y T +DAR + +L+ Sbjct: 106 DLLQALIKARRMSSRVGVVMYGQTIPELDEVKDLLNIEVVQHAYQTPDDARQRFEQLRRE 165 Query: 152 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 G E +VG+ L+ +LAE+AG+ G+ YS +VR+ F DAL++ R++ Sbjct: 166 GFEVIVGSSLVVELAEQAGLHGLLAYSLGSVRKGFEDALELARVA 210 >UniRef50_B4UAE7 Proprionate catabolism activator, Fis family n=5 Tax=Anaeromyxobacter RepID=B4UAE7_ANASK Length = 658 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 159/343 (46%), Positives = 213/343 (62%), Gaps = 39/343 (11%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 RY L ++G+SP M+++R+ YAR+ A VLI GE+GTGKE+ AQ IH Sbjct: 322 RYALSGLVGESPAMDRLRELAGRYARTDATVLITGESGTGKEMVAQGIH--------GAS 373 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 ++ PFVAVNC A E+LLEAELFGYEEGAFTGSRRGGR GLFE AH GTLFLDEIG++ Sbjct: 374 RRRDRPFVAVNCAAFPETLLEAELFGYEEGAFTGSRRGGRPGLFEAAHTGTLFLDEIGDV 433 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 P+ LQTRLLRVL+E++V R+G + P PVDVRVI+ATH +L + + +G FR DL+YRL IL Sbjct: 434 PVTLQTRLLRVLQERQVLRLGSNDPTPVDVRVIAATHRDLRQAIARGEFREDLYYRLDIL 493 Query: 392 RLQLPPLRER-VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 L LPPLRER AD+ +A LK +L L + A R+ L L + WPGN+RE Sbjct: 494 PLHLPPLRERGEADVELIASDLLKRAL--LRHDAADAHRRALSTVLPRLRGHAWPGNVRE 551 Query: 451 LRNMMERLA-LFLSVEPTPDLTPQFMQLLLPELARES----------------------- 486 L N++ER+A LF +P +T + + ++PE++ S Sbjct: 552 LENVLERVAVLFADRDPRARVTEEELAAVMPEISDPSARAAAPAAPAVPAAPSALAAPID 611 Query: 487 ---AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 A+ R L ++ + + G++ AA LGI RTT +R+L Sbjct: 612 LRLARAAQERALI-ERTVAECGGNQAEAARRLGIGRTTLYRKL 653 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 1/189 (0%) Query: 9 DDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRK-KLANERCDAIIA 67 D +P++W S +RL +F ++ +A + GFE+A+ R+ + + E DA +A Sbjct: 5 DRRPIVWAFSTSRLRHVFESVAPLMADVAEVRVFDKGFEEALQVARELRQSGEEVDAFVA 64 Query: 68 AGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFN 127 AG+NGAYL+ VPV+++ S D LQAL +A KL+ IGVV ++ T+ L + Sbjct: 65 AGTNGAYLRDHADVPVVVVTASTVDALQALVQARKLSRRIGVVNFRRTVAGLEGVHLIDD 124 Query: 128 LRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS 187 ++QR Y+T E+ + +++L A G + +VG G I +AE +G+ + +Y ++ +A Sbjct: 125 TVIEQRPYVTPEEGQAAVDDLSARGFKVIVGPGPICSVAERSGLRAVLLYGQDSLEEAIR 184 Query: 188 DALDMTRMS 196 A ++ R++ Sbjct: 185 QAAEVARIA 193 >UniRef50_B2TBW4 Proprionate catabolism activator, Fis family n=7 Tax=Burkholderiaceae RepID=B2TBW4_BURPP Length = 678 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 160/356 (44%), Positives = 212/356 (59%), Gaps = 57/356 (16%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L R+ L D++G S +E+VR+ A A VL+ GE+GTGKEL AQ IH Sbjct: 342 LVARHQLDDLIGNSAALERVRRLARAGAAHDATVLLSGESGTGKELVAQGIHNA------ 395 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 ++ +PFVA NC A+ E L+E+ELFG+EEGAFTG+RRGG+ GLFEIAH GT+FLDEI Sbjct: 396 --SRRRGNPFVAFNCAALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHTGTIFLDEI 453 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 GEMP LQ+RLLRVL+E+EV ++G + PVDVRVI+ATH +L ++QG FR DL++RL Sbjct: 454 GEMPAALQSRLLRVLQEREVMKLGSGRATPVDVRVIAATHRDLHALVEQGAFRADLYFRL 513 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ--ASETVLL------ 440 ++L+L+LPPLR+R D+ LA L S AL+ GL ASE VL Sbjct: 514 NLLQLKLPPLRDRRDDVPQLARYLLSRS----------ALQYGLTEGASERVLAFLAPLF 563 Query: 441 -HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR--------------- 484 HY WPGN+REL N++ R A++ + D Q Q + PE R Sbjct: 564 EHYAWPGNVRELENLLTRAAIYCG-DAAGD-AGQDWQAMFPEFGRMKAAAATLSDFGVSG 621 Query: 485 --------ESAKTPAPRLLTPQQ-----ALEKFNGDKTAAANYLGISRTTFWRRLK 527 +A PAP ++P + ALE+ G++ AA+ LGI RTT WR LK Sbjct: 622 TKNGANGVNAAAEPAPSRISPTRGDVLHALEQAGGNRAAASRALGIGRTTLWRLLK 677 Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 108/188 (57%), Gaps = 2/188 (1%) Query: 11 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGS 70 +P I VS++RL L ++ + A I ++ G+ AVT ++ + D ++AAGS Sbjct: 30 RPGIALVSISRLQSLCETVAPRYAGRAKIFSVREGYGAAVTALQAYVDAGSVDVVLAAGS 89 Query: 71 NGAYLKSRLSVPVILIKPSGYDVLQALAKAGKL--TSSIGVVTYQETIPALVAFQKTFNL 128 NGAYL+ L+VPV+++K +G+DVL A+ +A + IG+V ++ L + Sbjct: 90 NGAYLRDNLNVPVVMVKVNGFDVLSAITRATTTWPNAQIGLVLHETISHELADLSAWLKV 149 Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 L QR+Y + ++ R ++ L A G ++G G+ D A++AG+ +F+YS V +AF Sbjct: 150 SLKQRAYRSVDEVRLAVDSLAAEGCSVIIGPGMACDFAQQAGLASVFLYSLGAVEEAFER 209 Query: 189 ALDMTRMS 196 ++++ R+S Sbjct: 210 SVELARVS 217 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 145/322 (45%), Positives = 203/322 (63%), Gaps = 18/322 (5%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 + + DM+GQ P + L A + + VLI GE+GTGKE+ AQAIH E Sbjct: 328 QAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEMVAQAIHNE------- 380 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 +++ PF+A+NCG I LL +ELFGY +GAFTG+++GG AG FE+A+GGTLFLDEIG Sbjct: 381 -SKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIG 439 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 EM L +Q LLRV++EKEV R+GGH+ +PVDVR+I+AT+ +L ++Q+G FR DLF+RL+ Sbjct: 440 EMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRLN 499 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 ++ + LPPLRER DI L F++ PF L+A L+ YDWPGNIR Sbjct: 500 VMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEA----LMQYDWPGNIR 555 Query: 450 ELRNMMERLALFLSVEPT---PDLTPQFMQLLLPELARESAKTPAPRLLTPQ--QALEKF 504 EL+NM+ER+ L +P DL + Q RE+ + +AL++ Sbjct: 556 ELQNMIERV-LNQCTKPVLTAADLPEEIFQPSCSSQVRENVDISRNEIKKQSIIEALKQC 614 Query: 505 NGDKTAAANYLGISRTTFWRRL 526 NG+ + AA YLGISR+TF+R++ Sbjct: 615 NGNISKAARYLGISRSTFYRQM 636 >UniRef50_Q24RU7 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=Q24RU7_DESHY Length = 630 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 150/357 (42%), Positives = 216/357 (60%), Gaps = 55/357 (15%) Query: 188 DALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGE 247 DAL T + +R + + L +Y ++GQS ++++ + YA +++ VLI GE Sbjct: 297 DALQKTEIDVRQKLN---KKGLAAKYTFDAIIGQSEVVQKIIRVAQKYAVANSNVLIIGE 353 Query: 248 TGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSR 307 TGTGK+L AQ+IH H RQ + PFVA+NC A+ E LLE+ELFGY GAFTG+ Sbjct: 354 TGTGKKLFAQSIHN-----HSMRQ---NQPFVAINCAALPEQLLESELFGYVAGAFTGAA 405 Query: 308 RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 367 +GG+ GLFE+AH GTLFLDEI EMP+ LQ +LLRVL+E+E+ ++G + +P+DVR+I+AT Sbjct: 406 KGGKVGLFELAHKGTLFLDEIAEMPMGLQAKLLRVLQEREIRKLGDDKIIPIDVRIIAAT 465 Query: 368 HCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAA 427 + +L +Q+G+FR+DL YR+ +L L +PPLRER DI +A++FL A FS Sbjct: 466 NEDLRLKVQEGKFRQDLLYRIDVLSLSIPPLRERREDIKAIAKTFL--------AEFSQN 517 Query: 428 LRQGLQASE---TVLLHYDWPGNIRELRNMMERLALF--------------LSVEPTPDL 470 +Q ++ S+ L+ YDWPGNIRE+RN+ ERL++ L+++ P L Sbjct: 518 RQQSIRLSQEGLMELMRYDWPGNIREMRNVCERLSVLSENKTSGVHEVKEVLNIKKEPPL 577 Query: 471 TPQFMQLLLPELA--RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 L+ + A + S+ P +T QQ A LGISRTT WRR Sbjct: 578 N------LITQTAAMQNSSHQERPNKMTQQQ-----------MAEMLGISRTTLWRR 617 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 156/332 (46%), Positives = 212/332 (63%), Gaps = 36/332 (10%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 RY D++ QSP M ++ + +A + A VLI GETGTGKE+ AQ+IH + +R Sbjct: 314 RYTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIH------NASR- 366 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 +++ PFVAVNC A+ E+LLE+ELFGYEEGAFTG+R+GG+ GLFE+AHGGTLFLDEIGE+ Sbjct: 367 -RRNGPFVAVNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGEL 425 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 L LQ RLLRVL++K + RVGG + +PVDVR+I+ATH NL++ + + FRRDL+YRL++L Sbjct: 426 SLNLQARLLRVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVL 485 Query: 392 RLQLPPLRERVADILPLAESFL-KVSLAALSAP--FSAALRQGLQASETVLLHYDWPGNI 448 ++ LPPLRER D+ L ++ + K+S A P FS + +QA Y WPGN+ Sbjct: 486 QINLPPLRERPEDLPLLIKALVEKISRRAGRLPPIFSEEIIARMQA-------YSWPGNV 538 Query: 449 RELRNMMERLALFLS------------VEPTPDLTPQFMQLLLPELARESAKTPAPRLLT 496 REL N++ERL + S +EP + +QL L E R L Sbjct: 539 RELENILERLVVLRSGEEVEAGDLDEILEPAENQPQPVLQLALRGTLAEMEGEIIRRTL- 597 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL N ++T LG+S+TT WRRLKS Sbjct: 598 ---ALTGNNKEET--CRRLGLSKTTLWRRLKS 624 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 53 IRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTY 112 + + L + + II+ G + ++ VPV+ I S +D+++ALA+A L S IGV + Sbjct: 41 VARDLVTKGAEVIISRGGTATAISRQVEVPVVEIAVSAFDLIRALARARDLGSYIGVAGF 100 Query: 113 QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMT 172 + I + + + +++ EE+A G I E ++ G E +VG + A+E G+ Sbjct: 101 RNVIYGTKSLESALGVHIEELIIEAEEEAAGIIAEGRSMGLEVIVGDAVSVRSAKEMGLQ 160 Query: 173 GIFIYSAATVRQAFSDALDMTR 194 I + S ++A S A+ R Sbjct: 161 AILVTSG---KEAISQAIREAR 179 >UniRef50_Q2T371 Propionate catabolism operon regulatory protein PrpR n=83 Tax=Burkholderiaceae RepID=Q2T371_BURTA Length = 735 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/382 (43%), Positives = 222/382 (58%), Gaps = 52/382 (13%) Query: 187 SDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEG 246 S A++ +LR + H A RY L D++G +P + R YA+S A VLI G Sbjct: 337 SRAVERLDRTLRSHQHAQQFTA---RYRLDDIVGATPAIAHARDLARRYAKSDATVLILG 393 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 E+GTGKE+ AQ++H A ++ +PFVAVNCGA ESLLE+ELFGYEEGAFTG+ Sbjct: 394 ESGTGKEMIAQSLH--------ALSARRKYPFVAVNCGAFPESLLESELFGYEEGAFTGA 445 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 RRGG+AGLFE AH GTLFLDEIGEMP LQ+RLLRVL+E+EV RVG +PVP+D+RV++A Sbjct: 446 RRGGKAGLFEAAHRGTLFLDEIGEMPPSLQSRLLRVLQEREVVRVGSTEPVPIDIRVVAA 505 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 TH L ++ G FR DL+YRL+IL + LPPLRER ADI P + L A + Sbjct: 506 THRPLFAAVEAGAFRADLYYRLNILNIGLPPLRERAADI-PALAATLLAQAARREPRLAE 564 Query: 427 ALR------QGLQASETVLLHYDWPGNIRELRNMMERLALFL-----------SVEPTPD 469 LR + L A+ L+ Y WPGN+REL+N++ER+A+ L SV+ Sbjct: 565 RLRDAHDAARALDAANAALIRYRWPGNVRELQNVIERIAVELADAAERGDAAVSVDTLRA 624 Query: 470 LTPQFMQLLLPELAR--------------ESAKTPAPRLLTPQQ---------ALEKFNG 506 + P+ + L R A P L+ ++ AL+ G Sbjct: 625 IAPEVLALDAFAAGRGGDLNGGDVGGDVGRDADARRPTLVQRRRRAEADEIRAALDACGG 684 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 D+ A LGIS+TT WR+L + Sbjct: 685 DRDRACAMLGISKTTLWRKLAA 706 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/192 (43%), Positives = 126/192 (65%), Gaps = 6/192 (3%) Query: 11 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGS 70 +P +W V ++RL LFRDI+ E++ A++ I G+E+A+T + A ER DAI+AAGS Sbjct: 51 RPRVWAVGISRLRALFRDIADEYEERADLRIIARGYEEAITALATAGA-ERPDAIVAAGS 109 Query: 71 NGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL 130 NG YLK+R+ VPV+L+ P+G+DV+ ALA+A + I +V+Y ET P + +F + L + Sbjct: 110 NGTYLKARVRVPVVLVNPTGFDVMHALARARRDARRIALVSYGETPPEVRSFAAAYGLDV 169 Query: 131 DQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL 190 SY + ++A ++ E++ G E VVG GL+TDLA AGM +F+YS A+VR A + AL Sbjct: 170 VFASYQSAQEAETRVLEMRERGIETVVGPGLVTDLAANAGMGAVFVYSHASVRAAVNTAL 229 Query: 191 DMTRMSLRHNTH 202 ++ H TH Sbjct: 230 EVA-----HATH 236 >UniRef50_A8MEE7 Putative sigma54 specific transcriptional regulator n=2 Tax=Clostridiaceae RepID=A8MEE7_ALKOO Length = 622 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/335 (43%), Positives = 206/335 (61%), Gaps = 30/335 (8%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 H+ + L +Y D++G S ME+V +S V+I GE+GTGKE+ AQ+IH Sbjct: 309 HELNKKGLIAKYTFDDVVGFSHIMEEVVGKAKKIGQSDNTVIIYGESGTGKEIFAQSIH- 367 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + +++ K+ PFVA+NC AI+E+LLE+ELFGYEEG+FTG+R+GG+ GLFEIAHGG Sbjct: 368 -----NISKRSKE--PFVAINCAAISENLLESELFGYEEGSFTGARKGGKPGLFEIAHGG 420 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEI + LQ +LLRVL+EKE R+G +P+++R+I+AT+ L+ +++GRFR Sbjct: 421 TIFLDEINSISYSLQGKLLRVLQEKETMRIGSDYVIPLNIRIIAATNEELKTMVEEGRFR 480 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DLFYRL+IL L +PPLRER DILPL + F+ LS +A+ E LL Sbjct: 481 KDLFYRLNILELHIPPLRERKEDILPLFKYFMGDIAKDLSYEVPSAI-------EEKLLA 533 Query: 442 YDWPGNIRELRNMMERLALFLSVE-------PTP-DLTPQFMQLLLPELARESAKTPAPR 493 Y WPGN RELRN+ ER +F ++ P ++ + + L E+ R + Sbjct: 534 YRWPGNARELRNIAERYIIFKEIDIDSKEIHKNPSNIENDSICINLREINRYVEEKVIEM 593 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L+ KT AN LGISRT W+++KS Sbjct: 594 LVNQGMT-------KTEIANILGISRTALWKKIKS 621 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/330 (43%), Positives = 206/330 (62%), Gaps = 29/330 (8%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILL---YARSSAAVLIEGETGTGKELAAQAIHRE 262 + L +Y D++G SP +R+ IL+ Y+R + VLI GETGTGKEL A +IHRE Sbjct: 323 KQGLTAKYSFDDIIGSSPA---IRENILMAKRYSRVDSNVLIVGETGTGKELFAHSIHRE 379 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + + PFVA+NC A+ E+LLE+ELFGYE GAF+G+ + G+ GLFE+AH GT Sbjct: 380 --------SRRSAEPFVALNCAALPENLLESELFGYEPGAFSGASKNGKTGLFELAHKGT 431 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIGE+P+ LQ +LLRVL+E+E+ R+G ++ PVDVRVISAT+ N+EE +Q+G+FR Sbjct: 432 IFLDEIGEIPISLQAKLLRVLQEREIRRIGSNRVQPVDVRVISATNINIEEKIQEGQFRA 491 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL++L + +PPLRER DI + + +L + P ++ + ++ HY Sbjct: 492 DLYYRLNLLDITIPPLRERGDDIREMVDFYLTRFACEMGKPIPRLSKEAVD----LMTHY 547 Query: 443 DWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE----SAKTPAPRLLTPQ 498 WPGN+RELRN+ ERL + + T ++ + +Q+L +E +TP P+ Sbjct: 548 GWPGNVRELRNICERL---IVLSDTTEIGLREIQMLKIFRKKEGPLPGTQTPDKETDQPE 604 Query: 499 QALEKFN----GDKTAAANYLGISRTTFWR 524 + N K A LG+SRTT WR Sbjct: 605 TGIVYANLKPRKKKQDIAKELGVSRTTLWR 634 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/336 (39%), Positives = 201/336 (59%), Gaps = 29/336 (8%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 + +Y D+L + M ++++ LYA++ A +LI+GE+GTGKEL AQ+IH Sbjct: 314 KKGFVAKYFFEDILTANESMIELKKIADLYAKTDAEILIQGESGTGKELFAQSIHN---- 369 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 + + PFVAVNC AI ++LLE+ELFGYE GAFTG+++ G+ GLFE+AH GT+FL Sbjct: 370 ----ASTRSNGPFVAVNCAAIPDNLLESELFGYEGGAFTGAKKEGKQGLFELAHNGTIFL 425 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGE+ LQ RLLRV++EKE+ RVGG + +P+D+R++SAT+ NLE+ ++ G FR+DL+ Sbjct: 426 DEIGEISKGLQARLLRVIQEKEIMRVGGDKVIPIDIRIVSATNQNLEKQIETGEFRQDLY 485 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL++ + LPPLRER DI +A LK F+ +++ +L+ YDWP Sbjct: 486 YRLNVFNIILPPLRERKEDISLIANKLLKKFAENYDIDFNKVIKE----INPLLIEYDWP 541 Query: 446 GNIRELRNMMERLALFLSVEPTPDLTPQFMQLL---------------LPELARESAKTP 490 GNIRE N++ERLAL + + +++ L +++ K Sbjct: 542 GNIREFNNIIERLALVAVQTKSHNWAETLRKVMHTVEAMDEHIVVKVNLKNGLKDAVKEF 601 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++ L K++ DK L I R TFWR++ Sbjct: 602 EKYIINSM--LLKYDQDKDKVIKELKIGRATFWRKI 635 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 11/213 (5%) Query: 24 ELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPV 83 ELF+ I+ + + A+I L I KL N + D ++ G Y+K + +PV Sbjct: 22 ELFKSITEKSNVKAHIEVASLN---EAANIASKLQN-KVDVFLSRGGTADYIKKAVDIPV 77 Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 + I + +DVL+++ A ++TS + V TY +TI + + ++++ + + EED Sbjct: 78 VAIPVTAFDVLKSIHYAKEITSEVSVFTYGKTIFGIKNIEDILDVKIYEYIFKNEEDIDQ 137 Query: 144 QINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSA-ATVRQAFSDALDMTRMSLRHNTH 202 +NE+K+ G + VVG A++ G+ G+ + ++Q+ +AL + + Sbjct: 138 AMNEIKSKGIKVVVGGMPAVLTAQKYGLRGVLVECGEEAIQQSLQEALHIAEVR----KI 193 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLY 235 +A R+A R + +L D + Q + I+LY Sbjct: 194 EAARSA-RLKVIL-DSITQGVIVTNEHNKIVLY 224 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 152/317 (47%), Positives = 202/317 (63%), Gaps = 19/317 (5%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 TRY +M+G SP + + + A + +LI GETGTGKE+ AQAIH+ R Sbjct: 343 TRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVLAQAIHQA-----SNR 397 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 GK PFVA+NCGA+ SLLE+EL GYE GAFTGS+ G AG FE A+GGT+FLDEIG+ Sbjct: 398 GGK---PFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFEQANGGTIFLDEIGD 454 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPL LQ LLR+LEE+ VTR+GG P+PVDVRVISAT+ +L+E +Q+G FR DL+YRL + Sbjct: 455 MPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQKGTFREDLYYRLCV 514 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 L+++LPPLRER DI L +SF L AL F + + + T+L Y WPGNIRE Sbjct: 515 LQMELPPLRERSEDIPVLIQSF----LPALCQEFGKQMISLTRETLTILERYHWPGNIRE 570 Query: 451 LRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTA 510 L+N++++ A+F V + P LP+ ++ +ALE+ G+ T Sbjct: 571 LKNVLQQ-AMF--VMDGDVIHPHH----LPDSFYSQTQSDEYEKQKLLRALEQQEGNVTK 623 Query: 511 AANYLGISRTTFWRRLK 527 AA L +SR T +RRLK Sbjct: 624 AAASLNMSRATIYRRLK 640 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 137/330 (41%), Positives = 203/330 (61%), Gaps = 36/330 (10%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y D++GQS M+++++ I + S + VLI+GE+GTGKEL AQ+IH Sbjct: 318 KYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHN--------NS 369 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 ++S FVA+NCGAI +SL+E+ELFGYEEGAFTG++RGG G FE+A+ GTLFLDEIGEM Sbjct: 370 NRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGEM 429 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q LLRVL+E +TR+GG++ V VDVR+I+AT+ NL+++++ G FR DL+YRLS++ Sbjct: 430 PLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSVI 489 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +PPLRER DI L E FLK+ L +R+ + + LL Y WPGN+REL Sbjct: 490 PIYVPPLRERNGDIGILIEHFLKIKADKL-GKLIPEIRKNIYEN---LLSYGWPGNVREL 545 Query: 452 RNMMERLA--------------LFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP 497 N +E + + V D++ ++ L EL + + Sbjct: 546 ENCIENIVNMNGNTSFNFENRTIKKDVNCYSDVSLEYDMCSLEELEKRAISI-------- 597 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + G+ + A LGI+R+T + ++K Sbjct: 598 --CINQCGGNISKACRILGINRSTLYIKIK 625 >UniRef50_A8RXK4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RXK4_9CLOT Length = 648 Score = 264 bits (675), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 157/409 (38%), Positives = 224/409 (54%), Gaps = 57/409 (13%) Query: 153 TEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTR 212 T ++ GA ++ D+ G + + T F+DA +TR H D + Sbjct: 258 TGSINGADILYDMIPLTYKNGEILGAVIT----FNDAGTITRGE--HKIRDKGIKGFQAT 311 Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y D+ G S QM Q Q YA + VL+ GETG+GKE+ AQ++H Sbjct: 312 YSFKDICGSSQQMNQCIQHAKRYAHTDLTVLLLGETGSGKEMFAQSMHNA--------SS 363 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 +++ PFVAVNC A+ E +LE+ELFGY++GAFTG+RR G+ GLFE+AH GT+FLDEIGEMP Sbjct: 364 RRNGPFVAVNCAALPEGILESELFGYDDGAFTGARRSGKMGLFELAHNGTIFLDEIGEMP 423 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 + LQ+RLLRVL+E++V R+GG + PV++R+ +AT+ NL E + + +FR DLFYRL++L Sbjct: 424 MSLQSRLLRVLQERKVMRLGGDRVFPVNIRIFAATNKNLMELVGEHKFREDLFYRLNVLT 483 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L++PPLRERV DI LA FL+ S A+E VL Y WPGN R+LR Sbjct: 484 LKIPPLRERVEDIPDLANLFLRESGGKCCLT---------PAAEKVLTSYGWPGNARQLR 534 Query: 453 NMMERLALFL---------------SVEPTPDLTPQFMQLLLP----------------E 481 + ME++ + + EP ++ + P Sbjct: 535 HFMEKVRIICDSSVISGEAAGYVIQNYEPPCEMEQRGNSSGFPGSNGIGNYKATKGRVNR 594 Query: 482 LARESAKTPAPRLLTPQ---QALEKFNGDKTAAANYLGISRTTFWRRLK 527 E + R +T + QA+E+ G+KT AA LGI R+T WR +K Sbjct: 595 SQEEPGQENISREITEECLAQAMEQAGGNKTKAARILGIHRSTIWRYIK 643 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 11/177 (6%) Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK 124 I+ G+ ++ + +PV+ I D+ L +A +IGV+ Y + L Sbjct: 49 ILGRGATALRIRKVVDLPVVEIPIPFEDMADTLIEASSYGRNIGVIGYNNLLSGLERLNP 108 Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFI-------- 176 N+ + Q + E+D QI +LK G + +VG + T A E G+ + I Sbjct: 109 ILNVSIRQIFAVDEDDTYHQIQKLKNEGVDVIVGGLIQTRYARELGLPAVRIELTDKSLS 168 Query: 177 YSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTIL 233 Y+ + + TR + T N +YV D+ G M +V + L Sbjct: 169 YACQEAEKLIATVKAATRKAEELKT---ILNTTNEKYVAVDIKGNITWMNRVAKPYL 222 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 264 bits (675), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 153/341 (44%), Positives = 208/341 (60%), Gaps = 38/341 (11%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILL---YARSSAAVLIEGETGTGKELAAQAIHRE 262 + L R D+LG SP +RQTI + +++ ++ VLI GETGTGKE+ AQ+IH Sbjct: 310 KRGLVARLTFDDILGDSPA---IRQTIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNA 366 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 ++ PFVAVNC A+ E+LLE+ELFGY EGAFTG+ RGG+ GLFE+AHGGT Sbjct: 367 --------SSRRKGPFVAVNCAALPENLLESELFGYAEGAFTGAARGGKMGLFELAHGGT 418 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEI E+ LQ RLLRVL+E+E+ R+G + +PVDVR+I+AT+ +L + MQ G FR+ Sbjct: 419 IFLDEISEISPKLQGRLLRVLQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQ 478 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YR+ +L+L LPPLRER DI+PL + FLK+ + P +++ ++ +L Y Sbjct: 479 DLYYRVDVLKLVLPPLRERQEDIIPLMQHFLKLYCLRSNRP----VKEIGPDAQAMLRRY 534 Query: 443 DWPGNIRELRNMMERLALFLS--VEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-- 498 WPGN+RELRN+ ERLA+ S V D+ +L E R A Sbjct: 535 HWPGNVRELRNIAERLAVLASGPVIGARDIAA----VLTGETGRRKAINETAEPAAALAG 590 Query: 499 ------------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE+ + AA LGISRTT WRRLK Sbjct: 591 ANDVDLNRAILLKALEEADYHYGRAAARLGISRTTLWRRLK 631 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%) Query: 62 CDAIIAAGSNGAYLKSRL-SVPVILIKPSGYDVLQALAKAGK--LTSSIGVVTYQETIPA 118 D ++A G A LK + PV+ + SGYD+L+A+ + + I +V Q+ I Sbjct: 50 TDVVVARGVTAAALKRLMGDTPVVDMPVSGYDILRAVKACQQRFAATKIAIVGSQDMIYG 109 Query: 119 LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS 178 + + +++L E+DA I +K +G + V+G + T +AE G+ +FI Sbjct: 110 AKSIEDIMDIKLAVVEVREEDDAEQSIRNIKNSGVDIVIGGVMSTQIAERLGLKTVFI-- 167 Query: 179 AATVRQAFSDAL 190 T R+A AL Sbjct: 168 -ETGREAIYHAL 178 >UniRef50_B7V9N6 Propionate catabolism operon regulator prpR n=7 Tax=Pseudomonas RepID=B7V9N6_PSEA8 Length = 650 Score = 263 bits (673), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 173/412 (41%), Positives = 225/412 (54%), Gaps = 49/412 (11%) Query: 139 EDARGQINELKANGTEAVVGAGL-ITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 ED G+ N + G+ AVV L I + E G+ + T Q + TR Sbjct: 264 EDGGGEENRVIRLGSHAVVSNLLPILENGERTGL--VLTCQDITAVQRADQRIRSTRRP- 320 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 A RY L + G S ++ Q +A S + +LI GE+GTGKEL AQ Sbjct: 321 ---------GAFTARYRLEQLNGASKANREMLQLAKRFAASHSTILITGESGTGKELLAQ 371 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 IH E RH PFVA+NC A ESLLE+ELFGYEEGAF+GSR+GG+ GLFE Sbjct: 372 GIHNESPRRHG--------PFVAINCAAFPESLLESELFGYEEGAFSGSRKGGKPGLFEA 423 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 AH GTLFLDEIG+MP+ LQTRLLRVL+E+EV R+GG +P+ +DVR+I+ATH +L M+ Sbjct: 424 AHRGTLFLDEIGDMPVSLQTRLLRVLQEREVLRLGGTEPISIDVRIIAATHKDLGAAMKD 483 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 R DL+YRL+ILRLQ PLRER DI + + + L P +A + T Sbjct: 484 RELRTDLYYRLNILRLQTTPLRERPEDIPLICQGISQRLLVQGQPPGAAGI-------TT 536 Query: 438 VLLHY----DWPGNIRELRNMMERLALFLS-VEPTPDLTPQFMQLLLPELAR-----ESA 487 +LL Y WPGN+REL N++ER L S + + ++ +LPEL S Sbjct: 537 LLLPYLVRHSWPGNVRELENVIERAMLSASEIFHEHGVDEHYLARVLPELFEGQPQPRSR 596 Query: 488 KTPA-----------PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 K P+ +L Q+ L+ G AA LGISRTT WRRL+S Sbjct: 597 KEPSRTKDLHAIGKTAQLRYIQETLDSCQGSLDEAARRLGISRTTLWRRLRS 648 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 82/145 (56%), Gaps = 3/145 (2%) Query: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 + D + AG+ AYL+ L+ PV+ ++ G D+L+AL +A + +S + +++Y L Sbjct: 62 KADVFVCAGATAAYLRRHLARPVLTMRVGGGDLLRALEQAREHSSHVALLSYNRIDRDLQ 121 Query: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 A + F +++ Q +Y T E+AR + E+ G +++G+ + +LAE+AG+ G+ S Sbjct: 122 AMRTLFTVQVHQVAYTTLEEARQAVLEVARLGCRSIIGSSTVVELAEQAGLHGVLSLSED 181 Query: 181 TVRQAFSDA---LDMTRMSLRHNTH 202 T R+A +A LD R+ + H Sbjct: 182 TARKALEEAMGVLDSQRLEIAKRRH 206 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/334 (42%), Positives = 211/334 (63%), Gaps = 22/334 (6%) Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 +R N D A +Y L D++G+S ++ +++ L YA + + VLI GE+GTGKE+ A Sbjct: 304 IRSNLRDKGYIA---KYNLSDIIGESEIIQNIKKKSLKYAVTDSTVLIVGESGTGKEMFA 360 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 Q IH +K+ PFVA+NCGAI +L+E+ELFGYEEGAFTG+ R G+ GLF Sbjct: 361 QGIH--------LSSKRKNGPFVALNCGAIPGNLIESELFGYEEGAFTGASRKGKMGLFT 412 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 AHGGT+FLDEIGE+P+ Q RLLRV++E+EV +G ++ +P+DVR+I+A + +L ++++ Sbjct: 413 EAHGGTIFLDEIGELPIEFQARLLRVIQEREVRPLGSNKVIPIDVRIIAAANKDLLKEIE 472 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DL+YRL+IL +++P L ER DI + + FLK+ + + F+ ++ +A Sbjct: 473 KGNFRSDLYYRLNILSMRVPTLMERREDIGIIFKHFLKL----MCSRFNKVVKISEKAI- 527 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLT 496 +L Y+WPGNIREL N+ ERL + E T +L + + + + K + L Sbjct: 528 NILKEYNWPGNIRELENITERLVVLAEDEITDELVKEELGDFIH---YKDEKVSSLEYLK 584 Query: 497 PQQALE---KFNGDKTAAANYLGISRTTFWRRLK 527 Q L+ + G++T AA LGISRT WR LK Sbjct: 585 QNQILKVLSECKGNQTLAAQKLGISRTHLWRLLK 618 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 149/332 (44%), Positives = 210/332 (63%), Gaps = 36/332 (10%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 R RY +M+G S M++ R +RS + VLI+GE+GTGKEL AQ IH + Sbjct: 333 RARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNA-----SS 387 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 R G+ PFVAVNC AI E+LLE+ELFGYEEG+FTG+++GG+ G E+A+GGTLFLDEIG Sbjct: 388 RHGQ---PFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIG 444 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MPL +Q +LLR+L+E+ + RVG + + +DVR+I+ATH NL++ +Q+G FR+DL+YRL+ Sbjct: 445 DMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLN 504 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLA--------ALSAPFSAALRQGLQASETVLLH 441 +L + +PPLRER+ D LP FL L+ A+S+ F A + Sbjct: 505 VLPITIPPLRERMDD-LPALAKFLVTKLSGRFGKEPVAISSLFMRACQS----------- 552 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ-- 499 YDWPGNIREL N++ER A+ + V+ LT + + L EL + A R L + Sbjct: 553 YDWPGNIRELENVIER-AMNM-VDDGDALTAEMIDLDPVELPADHAIPDGVRPLKEVEME 610 Query: 500 ----ALEKFNGDKTAAANYLGISRTTFWRRLK 527 ALE G+ A++ LGISR T +R++K Sbjct: 611 MVVRALEMSRGNIVHASSLLGISRNTIYRKIK 642 >UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1K8_9CLOT Length = 637 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 144/333 (43%), Positives = 194/333 (58%), Gaps = 32/333 (9%) Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 N +Y D++ +S M+ + LYA ++A +LI G +GTGKEL AQ+IH R Sbjct: 320 NGFMAKYTFEDIVAESALMKSLMDKARLYASTNAGILINGNSGTGKELLAQSIHNAS-PR 378 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 H+ PFVAVNC AI SLLE+ELFGYEEGAF+G+++GG+ GLFE+AH GT+FLD Sbjct: 379 HN-------QPFVAVNCAAIPASLLESELFGYEEGAFSGAKKGGKRGLFELAHKGTIFLD 431 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EI MP+ LQ+ LLR ++EKE+ RVG + + VD+R+ISA + N+EE + G+FR DL+Y Sbjct: 432 EINSMPIELQSVLLRTIQEKEIRRVGAQKNIYVDIRIISACNKNMEELIADGKFRADLYY 491 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 RL+ L+L +P L R DI PL FLK A S P A + +LL WPG Sbjct: 492 RLNTLKLTMPDLETRKEDIPPLCGYFLKRYSAKYSVPIPALSPE----DSEILLKRSWPG 547 Query: 447 NIRELRNMMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAP--------R 493 N+REL N M R + SV D TP PE A S + P Sbjct: 548 NVRELENTMHRYVILSSLQHCSVNDCLDGTP-------PEQAASSGASQPPLEGTLAQME 600 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L ++ LE+ +G + A LGISR+T W++L Sbjct: 601 LALIRKCLEENHGSREKTAKQLGISRSTLWKKL 633 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 261 bits (667), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 159/358 (44%), Positives = 216/358 (60%), Gaps = 36/358 (10%) Query: 186 FSDALDMTRMS--LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVL 243 F D ++ R+ +R H L R L D++G+S ++ + + +A A VL Sbjct: 290 FRDVTELQRLERLVRQKLH---AKGLVARIRLADIIGESAALKGLIERARKFAAVDATVL 346 Query: 244 IEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 303 I GETGTGKE+ AQ IH A H A + PFVAVNC A+ E+LLE+ELFGY EGAF Sbjct: 347 IVGETGTGKEMLAQGIHN---ASHRA-----NGPFVAVNCAALPENLLESELFGYAEGAF 398 Query: 304 TGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363 TG+++GG+ GLFE+AHGGT+FLDEI EMPLPLQ+RLLRVL+E+EV R+GG + +PVDVR+ Sbjct: 399 TGAKKGGKPGLFELAHGGTIFLDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRI 458 Query: 364 ISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK--VSLAALS 421 I+A++ NL +++G FR DL+YRL +L L PPLRER DI L +FL+ L L Sbjct: 459 IAASNRNLRNLVEKGLFRDDLYYRLHLLTLTAPPLRERKEDIPLLVRAFLRKHSHLNPLV 518 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE 481 + + Q +L Y+WPGN+REL N ++RL + LS E + + LL E Sbjct: 519 SDIDSLAVQ-------LLAEYEWPGNVRELENAIQRL-IILSEEQI--IGKAAVSALLEE 568 Query: 482 LAR------ESAKTPAPRL--LTPQ---QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L + AP L L Q L + N +K+ AA LGI R+T WR+L+ Sbjct: 569 LQGGQTLPFRGKQQAAPSLADLEAQYIAAVLAEENNNKSRAAKRLGIDRSTLWRKLRG 626 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 2/165 (1%) Query: 34 DHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDV 93 D A++T + + V R+ +A + II+ G + L +PV+ IK + +D+ Sbjct: 24 DLGAHVTVYEGDLDDGVQAARQAVAGG-VEVIISRGGTARLIARTLDIPVVEIKVTPFDI 82 Query: 94 LQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGT 153 L+ LA+ + IG++ + + + + L Q + +DA G+I G Sbjct: 83 LRCLAQLREYKGKIGIIGFSNVVYGCESIGAVLGMELKQIIIDSRDDAPGKIAAAAQAGI 142 Query: 154 EAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSDALDMTRMSL 197 E VVG + A G+ G+ I S + QA DA ++ + + Sbjct: 143 ELVVGDAISIKQATRLGLKGVLITSGKEAIVQAIHDAENIAEVRI 187 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 140/339 (41%), Positives = 209/339 (61%), Gaps = 44/339 (12%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y D++G+SPQ+++V + L ++S + VLI GE+G GKEL AQ+IH + G Sbjct: 128 YTFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSIHN----ASNVSNG 183 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 PF+A+NCGAI ++L+E+ELFGYEE +FTGSR+GG+ G FE+A GGT+FLDEI EMP Sbjct: 184 ----PFIALNCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDEICEMP 239 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 + +Q LLRV++E VTR+GG +P++VR+I+AT+ NL+E++++G FR DL+YRL+++ Sbjct: 240 IEMQVTLLRVIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYRLNVMP 299 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL----QASETVLLHYDWPGNI 448 L LPPL++R+ D+ L FL + S L +G+ Q ++ Y WPGNI Sbjct: 300 LHLPPLKDRLGDVPILINYFLNIK--------SQKLHKGIPNINQKLYKKMISYCWPGNI 351 Query: 449 RELRNMMERLALF---LSVEPTPD-------------LTPQFMQLLLPELARESAKTPAP 492 REL N +E + S E D + P L LPE E++ P Sbjct: 352 RELENCVENIVNLNGSTSYEINFDECHCLKTDNLGNPINPN--SLDLPESYNENSIKPL- 408 Query: 493 RLLTPQQALEK----FNGDKTAAANYLGISRTTFWRRLK 527 ++ ++A+EK F+G+ T A+N LGISR + ++K Sbjct: 409 -IILEKEAIEKALCTFDGNITKASNALGISRNALYNKIK 446 >UniRef50_B1EKH8 Propionate catabolism operon regulatory protein PrpR n=1 Tax=Escherichia albertii TW07627 RepID=B1EKH8_9ESCH Length = 650 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 163/358 (45%), Positives = 215/358 (60%), Gaps = 30/358 (8%) Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 F+D+ + R R H RY D+L SP M V+ YA ++A VLI+ Sbjct: 297 FADSGRIQRAEQRLR-HQLRNKGFTARYSFDDVLTCSPAMLAVKSLAKTYAAANATVLIQ 355 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GETGTGKEL AQ IH + PFVA+NC AI E+LLE+ELFGYEEGAFTG Sbjct: 356 GETGTGKELFAQGIH--------LASRRADGPFVAINCAAIPEALLESELFGYEEGAFTG 407 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 +RR G+AG+FE+AH GTLFLDE+GE+PL LQ RLLRVL+E+EV R+GG Q +PVDVR++ Sbjct: 408 ARRSGKAGMFELAHQGTLFLDEVGELPLLLQARLLRVLQEREVVRLGGTQVIPVDVRILC 467 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 ATH +L++ + G FR+DL YRL++L L +PPLRER +DIL LA FL Sbjct: 468 ATHRDLDQCVSVGTFRQDLLYRLNVLSLFIPPLRERRSDILHLARHFLGQQQIE-----K 522 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL-AR 484 + L+A L Y+WPGN+REL+N+ ERLALF++ EP D + + P + Sbjct: 523 HRVNHVLEAVGAQLERYNWPGNLRELQNITERLALFVTFEPQTDWRQRLSMVWSPAAQGK 582 Query: 485 ESAKTPAP------------RLLTPQ---QALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++A P R L Q L++ N D+T A LGISR + WRR++ Sbjct: 583 DNAVLPLTLQGEFASLKEMVRDLEQQIIHYYLQRNNDDQTRVAQLLGISRMSLWRRMQ 640 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Query: 50 VTYIRKKLANERCDAIIAAGSNGAYLKSRL-SVPVILIKPSGYDVLQALAKAGKLTSSIG 108 V I ++ ++ + +++ G YL+S + VPV+ IK + D+L AL + Sbjct: 45 VYQISEQCLGQQPEVLLSRGGTAEYLRSVVQDVPVVAIKTAPLDLLCALQPFVHRIRHVA 104 Query: 109 VVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEE 168 + E++P + + ++++D+ + T+E+ + Q+ + G E +G L LA Sbjct: 105 FFNFGESMPGVADIARALDMQIDEYVFHTQEEMQSQLLISRQLGAEMALGGQLTVRLAGA 164 Query: 169 AGMTGIFIYSAA-TVRQAFSDALDM 192 + + + +VRQ +A ++ Sbjct: 165 VQFPCVLLETGEHSVRQLLQEAANI 189 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/332 (42%), Positives = 201/332 (60%), Gaps = 35/332 (10%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 + D+LG S + +A+S + ++I GE+GTGKE+ AQ+IH Y R + Sbjct: 311 KSTFNDILGSSDALMHSVNMAKKFAKSDSTIIITGESGTGKEIFAQSIHN-YSNRFNG-- 367 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 PFVA+NC AI E++LE+ELFGY +GAFTG+R G+AG+FE+AH GT+FLDEIGE+ Sbjct: 368 -----PFVAINCAAIPENILESELFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEIGEI 422 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 +Q +LLRVL+E+EVTR+G + VP++VRVI+AT+ NL E + FR DLFYRL +L Sbjct: 423 SKDVQVKLLRVLQEREVTRIGDTKVVPINVRVITATNKNLVEQIDNNNFREDLFYRLCVL 482 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 +L LPPLRER DI L S ++ + P S + ++ +L YD+PGNIR+L Sbjct: 483 KLDLPPLRERKEDIEQLTYSI----ISHYNKPVSIS-----DSALKLLSRYDFPGNIRQL 533 Query: 452 RNMMERLAL-----FLSVEPTPDL---TPQFMQLL--------LPELARESAKTPAPRLL 495 +N++ERL + F+ D+ P F + + P L+ +L+ Sbjct: 534 KNIVERLVVMCDDNFVDEHLVSDILISEPHFRKDINLIPAINYSPVLSDNKIVDYEKKLI 593 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LEK NG K+ AN LGIS TT WR+LK Sbjct: 594 L--ETLEKNNGVKSITANQLGISTTTLWRKLK 623 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 146/353 (41%), Positives = 217/353 (61%), Gaps = 26/353 (7%) Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 F D ++ M + A + L + D++ S +M+ V YA + VLI Sbjct: 292 FQDVAEIQNMEQKIRRRLADK-GLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLIL 350 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GETGTGKEL AQ+IH +A + +K+ PFVA+NC A+ E+LLE+ELFGY EGAFTG Sbjct: 351 GETGTGKELFAQSIH-------NASE-RKNGPFVAINCAALPENLLESELFGYAEGAFTG 402 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 +R+GG+AGLFE+AH GT+FLDEIGEMP+ LQ++LLRV++EK+V R+G + +PVDVR+I Sbjct: 403 ARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIIC 462 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ NL E + +G+F+RDLFYR+SIL++ +P LRER DI L F+K Sbjct: 463 ATNRNLIEMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQ 522 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE 485 +G++ +L +D+PGN+REL +++ER ++ + + ++L + + E Sbjct: 523 GITSRGME----LLKKWDYPGNVRELESIIERAC---AICEGNIIDVRDIKLYNDQDSME 575 Query: 486 SAKTPAPRL-LTPQQALEK---------FNGDKTAAANYLGISRTTFWRRLKS 528 + + L + P +EK +G+ + AA LGISRTT WR+LK+ Sbjct: 576 NKVSSQSFLEIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKN 628 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 6/169 (3%) Query: 22 LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSV 81 L E+ ++ +FD N+ +LG I ++ + D II+ G +K +S+ Sbjct: 16 LLEIAIEVKKDFDFAFNL---ELGDLSEGVKIAQEWEKKGADIIISRGGTYQLIKEAVSI 72 Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 PV+ IK S +D+L+ + IGV Y I + NL L + E +A Sbjct: 73 PVVEIKVSPFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLNLIKIEIKKETEA 132 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL 190 QI E K G + ++G + A + G+ I S ++A ++AL Sbjct: 133 LFQIAEAKEKGAKIIIGDTIGACCAAQLGLKSRLIISG---KEAVANAL 178 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 146/332 (43%), Positives = 200/332 (60%), Gaps = 22/332 (6%) Query: 205 TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYF 264 T L Y D++ +SP+++ V + +A S+ +LIEGETGTGKEL AQ+IH Sbjct: 314 TDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSNILIEGETGTGKELFAQSIHNA-- 371 Query: 265 ARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 + + PFVAVNC A+ E+LLE+ELFGY EGAFTG+ +GG+ GLFE+AH GTLF Sbjct: 372 ------STRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKGGKTGLFELAHKGTLF 425 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDEI E+PL +Q +LLRVL+E EV RVGG + + VDVR+I+AT+ +L +QGRFR+DL Sbjct: 426 LDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNHSLSRITEQGRFRQDL 485 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDW 444 YRL++L+L LPPLR R D L +L + L +Q +L Y + Sbjct: 486 LYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVATAAIQ----MLSDYHF 541 Query: 445 PGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE---LARESAKTPAPRLLTPQQ-- 499 PGNIRELRN+ ERL + + ++ + L PE + +S P P + Sbjct: 542 PGNIRELRNVTERLVV-ICMDKEEITADDMREALHPEELPVKFQSTDMPIPPFYQDGERE 600 Query: 500 ----ALEKFNGDKTAAANYLGISRTTFWRRLK 527 LE+ N ++T A LGI+RTT WRR+K Sbjct: 601 FLIRILEESNYNQTLTAEKLGINRTTLWRRMK 632 >UniRef50_A8MEG8 Putative sigma54 specific transcriptional regulator n=3 Tax=Clostridiaceae RepID=A8MEG8_ALKOO Length = 700 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 136/284 (47%), Positives = 187/284 (65%), Gaps = 21/284 (7%) Query: 176 IYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLY 235 +Y A + + FSDA + + LR A +Y GD++G+S +++ + Sbjct: 301 LYGAVAIIRRFSDA-ESQQHRLRAKVIGKGHKA---KYNFGDIVGESENIKKTIEIAKRM 356 Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 ARS++++LI GE+GTGKEL AQAIH +++ FVA+NCGA+ ESLLE+EL Sbjct: 357 ARSNSSILITGESGTGKELFAQAIHN--------NSKRRNFQFVAINCGALPESLLESEL 408 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGYEEGAFTG+R+GG++GLFE+AH GTLFLDEIGEMP LQ RLLRVL+E+EV R+GG Sbjct: 409 FGYEEGAFTGARKGGKSGLFELAHNGTLFLDEIGEMPPSLQMRLLRVLQEREVMRLGGDS 468 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 + VD+R+I+AT+ NL+E M G FR DL+YRL++L L++PPLR R DI L + F Sbjct: 469 IINVDIRIIAATNKNLKEMMATGGFREDLYYRLNVLPLKIPPLRSRKKDIETLVDRF--- 525 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLA 459 A F + Q ++ VLL Y+W GN+REL+N +E L Sbjct: 526 -RAEFRGSFVLS-----QMAKDVLLSYNWKGNVRELKNYIEYLV 563 >UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 Tax=Clostridiales RepID=C5EPL2_9FIRM Length = 640 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/340 (43%), Positives = 207/340 (60%), Gaps = 32/340 (9%) Query: 205 TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYF 264 + + +Y D++ QS ++Q +T YA S + V+I GETGTGKEL AQ IH Sbjct: 312 SERGFQAKYTFQDIIHQSRVIDQTIETARRYAASDSNVIIVGETGTGKELFAQGIHNS-- 369 Query: 265 ARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 + + PFVA+NC A+ E+LLE+ELFGY EGAFTG+ +GG+ GLFE AHGGTLF Sbjct: 370 ------SSRNNGPFVAINCAALPENLLESELFGYVEGAFTGTSKGGKMGLFEQAHGGTLF 423 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDE+GE+ LP+Q++LLRVL+E++V R+G ++ + V+VR+ISAT+ ++ + +G+FRRDL Sbjct: 424 LDEVGEISLPIQSKLLRVLQERQVRRIGDNKVIDVNVRIISATNKSISKLSDKGQFRRDL 483 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH-YD 443 YRL +LRL LPPLRER D+ L L+V P L+ LLH Y Sbjct: 484 VYRLDVLRLFLPPLRERENDVELLFLHLLQVQGRETRTPLPQ-----LEPGALSLLHQYP 538 Query: 444 WPGNIRELRNMMERLALFLS-------------VEPTPDLTPQFMQLLLPELARESAKTP 490 + GNIREL+NM+ER ++ + P D+ P L+ ARE K Sbjct: 539 FIGNIRELKNMVERASVLKTGNIITRKNLQDALYPPDLDMDPDSGGSLMLS-AREGIKDA 597 Query: 491 APRLLTPQ---QALEKFNGDKTAAANYLGISRTTFWRRLK 527 A L P+ QALE+ NG +T AA LG+ R+T WR+++ Sbjct: 598 AA-LSEPERLRQALEQCNGSRTRAARLLGMDRSTLWRKMQ 636 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 145/344 (42%), Positives = 203/344 (59%), Gaps = 38/344 (11%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 L +Y +++ P+M ++ + YAR+ VLIE E+G GKEL AQ+IH+ Sbjct: 316 GLYAKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCGKELFAQSIHQA----- 370 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 + PFVA+NC A+ LLE+ELFGY EGAFTG+R+ G+ GL E+AHGGTLFLDE Sbjct: 371 ---SSRCRGPFVAINCSALPTQLLESELFGYVEGAFTGARKEGKPGLIELAHGGTLFLDE 427 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IG+M L LQ RLLRVLEE++V R+G + +PVD+R+++AT+ L++ + +G+FR DLF+R Sbjct: 428 IGDMELTLQARLLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQFRMDLFHR 487 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 L++L L +PPLR R DI+PLAE F LA + + + A++ +LL Y WPGN Sbjct: 488 LNVLNLSIPPLRHRREDIIPLAEYF----LAEFANKYGQRPIELTAAAKDILLRYSWPGN 543 Query: 448 IRELRNMMERLALFLSVEPTPDLTPQFMQLL------------LPELARESAKTPAP-RL 494 +RELRN+MER++L E D++ L ELA+ P R Sbjct: 544 VRELRNIMERISLVY--EEAQDVSAILRDFLGNSDYCNNSDYSTLELAKTGMLAVTPERF 601 Query: 495 LTPQ-----------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 L PQ L G+K+ AA LGI+R T R L+ Sbjct: 602 LLPQSIRDMKRQLAISTLAACGGNKSKAAKQLGITRATLDRLLR 645 >UniRef50_Q0KAG6 Propionate catabolism activator n=5 Tax=Cupriavidus RepID=Q0KAG6_RALEH Length = 679 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 167/389 (42%), Positives = 221/389 (56%), Gaps = 48/389 (12%) Query: 168 EAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQ 227 EAG TG + DA + R+ + TR A RY L D+ G S M + Sbjct: 310 EAGTTGAVL--------TIQDASAIQRVDRNLRSRARTRPA-GVRYSLDDLAGTSAAMTE 360 Query: 228 VRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 287 +R+ YA + VLI GE+GTGKE+ AQ +H DA +++ PFVAVNC A Sbjct: 361 LRELARRYAAVDSTVLIGGESGTGKEVLAQGMH-------DASP-RRAFPFVAVNCAAFP 412 Query: 288 ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKE 347 E+LLE+ELFGYEEGAFTG+RRGG+AGLFE AH GTLFLDE+G+MP LQTRLLRVL+EK+ Sbjct: 413 EALLESELFGYEEGAFTGARRGGKAGLFESAHNGTLFLDEVGDMPSALQTRLLRVLQEKQ 472 Query: 348 VTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILP 407 V +GG VPV+VRVI ATH +L ++ G FR+DL+YRL+ILR+++PPLR+R D+ Sbjct: 473 VLPIGGLDAVPVNVRVIGATHRDLAAMVRDGSFRQDLYYRLNILRIEMPPLRDRSEDLQE 532 Query: 408 LAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT 467 LAE + + L ++ A+ L Y WPGNIREL N+ ER+A+ ++ Sbjct: 533 LAELLYRRAQERLGMDRP---QRLPAAARARLARYRWPGNIRELENVTERIAVLVAGRRL 589 Query: 468 PDLTPQF-MQLLLPEL------------------ARESAKTPAPRLLTPQQA-------- 500 Q +Q +PEL A P L +Q+ Sbjct: 590 DSEALQRELQAAVPELFGDGMLAPAEAEAEADAEPAAPATRPRRSLAGVKQSSEVEHIRR 649 Query: 501 -LEKFNGDKTAAANYLGISRTTFWRRLKS 528 L + GD+ AA + LGIS TT WRRLK+ Sbjct: 650 VLAECGGDRAAACHILGISPTTLWRRLKA 678 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 116/192 (60%) Query: 4 PPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCD 63 PP +P IW + ++RL F D+ + A + GFE A + + ++ R D Sbjct: 24 PPVSTQARPRIWAIGISRLARAFADLIPAYADRAEFRIVGKGFEAAASAVAREAREGRLD 83 Query: 64 AIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQ 123 ++A GSNGAYL+ + VPV+L+K +G+DV+ ALA A +++ + +VT+ T + F Sbjct: 84 VVVAGGSNGAYLRQHVDVPVVLVKVTGFDVMSALATARRISPRVALVTHASTYAEVDEFV 143 Query: 124 KTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 + F+L + +Y+TE+DA ++ LK G + VVG GL+TDLA+ G+TG+F+YS +VR Sbjct: 144 RAFSLSVPAYTYLTEDDAVARVKALKQEGIQVVVGPGLVTDLADRYGLTGVFLYSGNSVR 203 Query: 184 QAFSDALDMTRM 195 A DA++ R+ Sbjct: 204 MALEDAIEAARL 215 >UniRef50_A9BWJ6 Proprionate catabolism activator, Fis family n=3 Tax=Comamonadaceae RepID=A9BWJ6_DELAS Length = 681 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 156/357 (43%), Positives = 206/357 (57%), Gaps = 36/357 (10%) Query: 198 RHNTHDATRNALR---TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 R + H +LR R+ + D G S ++VR+ +A S A VLI+G++GTGKEL Sbjct: 332 RADRHLRANRSLRGAGVRWRIEDYAGDSEPAQRVRRLARQFAASDATVLIQGDSGTGKEL 391 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 AQ +HR + + PF+AVNC A+ ESLLE+ELFGY+EGAFTG+RRGG+ GL Sbjct: 392 LAQGMHRASR--------RAAQPFLAVNCAALGESLLESELFGYDEGAFTGARRGGKTGL 443 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 E AH GTLFLDEIG+MPL LQ+RLLRVL+E+EV RVG VPVD+RVI+ATH +L Sbjct: 444 IEAAHTGTLFLDEIGDMPLALQSRLLRVLQEREVLRVGSTTSVPVDLRVIAATHADLAAL 503 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRER-VADILPLAESFL--KVSLAALSAPFSAALRQG 431 +++G FRRDLFYRL++LRL +P L ER D+ LA + L ++ +L A S+ Sbjct: 504 VERGEFRRDLFYRLAVLRLAMPGLHERGQGDVQALARTMLARRLRTQSLQAESSSLEPLL 563 Query: 432 LQASETVLLHYDWPGNIRELRNMMERL--------------------ALFLSVEPTPDLT 471 + H WPGN REL N +ERL LF + T Sbjct: 564 EALLDLAAAHR-WPGNARELDNWVERLLACRHDLRDGAGRVDMGRLRELFPECDGAGQGT 622 Query: 472 PQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 Q + +L A+ A R ++ LE+ GD+ A LGISR T WRRL+S Sbjct: 623 VQALPAQQRQLQLREARRDAERQRM-REVLEQVQGDQRRACEILGISRATLWRRLRS 678 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 5/188 (2%) Query: 12 PVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSN 71 P + T+ R+ + +SL + + F+ AV +R A E DA++AAG++ Sbjct: 28 PRVVTIGRHRIGRVLERMSLAVGDQVRVEHVSAAFDDAVQAVRALQAVEPIDALVAAGAS 87 Query: 72 GAYLKSRLSVPVILIKPSGYDVLQALAKAGKL-----TSSIGVVTYQETIPALVAFQKTF 126 GA+++ + +PV++I+ G+D+LQALA A +L T IG+V++ P L F F Sbjct: 88 GAWVREHVDIPVVMIEVRGFDLLQALASARELAQAGGTPRIGLVSFDHPSPHLAQFDALF 147 Query: 127 NLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAF 186 + Q SY EDA+ + L+A G AVV GL+ DLAE+AG+ + +YS V QA Sbjct: 148 GAGIAQFSYHGPEDAQACVRALQAAGVGAVVAPGLVADLAEQAGIPSVLLYSDGAVLQAL 207 Query: 187 SDALDMTR 194 DA+ + R Sbjct: 208 RDAVLLAR 215 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 254 bits (650), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 142/341 (41%), Positives = 199/341 (58%), Gaps = 37/341 (10%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 Y G++ SP+ME V + A + A VLI GE+GTGKEL A AIH ++ R DA Sbjct: 261 HYTFGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIH-QHSDRKDA-- 317 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 P + +NCGAI E+L E+E FGY GAFTG+++ G+ G FEIA GGTLFLDEIG++ Sbjct: 318 -----PLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDL 372 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q +LLR L+E RVGG +PV VDVR+I+AT+ NLEE +Q +FR DL+YR+++ Sbjct: 373 PLNMQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVA 432 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 L+LPPLRE+ DI+PL + F+ S + + QA L Y WPGN+REL Sbjct: 433 NLELPPLREKTEDIMPLTKRFID----HFSQVHGIEITEIEQAVMDTLEEYHWPGNVREL 488 Query: 452 RNMMERLALFLS------------VEPTPDLTPQFMQLLLPELARE-------SAKTPAP 492 +N++ERL +F + + P P Q Q L +L R+ S K+ + Sbjct: 489 KNVIERLVIFSTQGKISIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSE 548 Query: 493 RLL------TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + T +L+K + +K A L I R+T + R+K Sbjct: 549 SKIDELERKTILDSLKKHSFNKAKVARELNIPRSTLYYRMK 589 >UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A8MJJ5_ALKOO Length = 494 Score = 254 bits (649), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 137/329 (41%), Positives = 204/329 (62%), Gaps = 27/329 (8%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y + ++G SP+++++++ I+ +R+++ VLIEGETG GKEL A +IH Sbjct: 174 KYTIDHIVGDSPEIQELKRKIIQASRTNSTVLIEGETGVGKELVAHSIH--------DLS 225 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 + S PFV VNC AI LLE+E FGYEEGAFTG+++GG+ G FE+A+ G+LFLDEI ++ Sbjct: 226 NRDSFPFVKVNCSAIPRELLESEFFGYEEGAFTGAKKGGKEGRFEMANKGSLFLDEINQL 285 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL Q +LLR L+EKE+ RVGG +PVDVRVI+A + NLE+ +++ +FR DLFYRL++L Sbjct: 286 PLFSQPKLLRALQEKEIERVGGKGSIPVDVRVIAAANVNLEKMIEEKKFRSDLFYRLNVL 345 Query: 392 RLQLPPLRERVADILPLAESF---LKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 ++ +PPLR+R DI + ES L L S + L +HYDWPGNI Sbjct: 346 KIVIPPLRKRKEDIPLIVESLIEKLNFQLGMKVPGISEDAKMKLTE-----VHYDWPGNI 400 Query: 449 RELRNMMERLALFLSVEPTPDLT--PQFMQLLLPELARESAKTPAPRLLTPQQALEK--- 503 REL+N++ER A+ S T + + + P+ + ++ ++ ++ LEK Sbjct: 401 RELQNIVER-AMNSSWGETLEWVHFKDYFRSKNPKFIDKISQNNMSKIKDIKEELEKETI 459 Query: 504 -----FNGDKTAAANYLGISRTTFWRRLK 527 + K AA LGISRT F+++LK Sbjct: 460 INALENSKSKAEAAKKLGISRTAFYKKLK 488 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 164/459 (35%), Positives = 245/459 (53%), Gaps = 64/459 (13%) Query: 116 IPALVAFQKTFNLRLDQRSYITEEDA-------RGQINELKANGTEAVVGAGLITDLAEE 168 I L++F L +D + YI ++ R QI + + TE V A L+ + + Sbjct: 20 IEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHVTEFVQSASLLQYIKQG 79 Query: 169 AGMTG--IFIYSAATVRQAFSDALD--------------MTRMSLRHNTHDATRNALRTR 212 T + I SA R FS L +T+ L ++R TR Sbjct: 80 KPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEGAILFLTKPILLQEQEQSSRYG--TR 137 Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 + L D++G SP + +++ ++ A+S + VLI GE+GTGKE+ AQ+IHR Sbjct: 138 FSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHR--------LSH 189 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 + PFVA+NC AI E+LLE+ELFGYEEGAFTG+++GG+ G FE+A GGTLFLDEIG+MP Sbjct: 190 RNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMP 249 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L LQ +LLRVL+E+ + RVGG + + VDVR+I+ATH +LE + +FR DL++RL+++ Sbjct: 250 LYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIP 309 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L +PPLRER D+ L + ++ L Q L+ + Y WPGNIREL Sbjct: 310 LYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKK----IFDYHWPGNIRELE 365 Query: 453 NMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------------- 498 NM+E + +++E +T + + E++++ + PQ Sbjct: 366 NMVEYI---VNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINE 422 Query: 499 -------QALEKFNGD---KTAAANYLGISRTTFWRRLK 527 QAL++F K AA LGIS T +R+L+ Sbjct: 423 VEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLE 461 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/346 (42%), Positives = 205/346 (59%), Gaps = 29/346 (8%) Query: 194 RMSLRHNTHDATRNALR--TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 ++ + N N LR Y D+LG S + V++ A ++ VLI+GETG G Sbjct: 130 KLQVAENKAKKFENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQGETGVG 189 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KEL A AIH + PFV++NC AI + LLE+ELFGY+EGAFTG+R+ G+ Sbjct: 190 KELFAHAIHN--------NSNSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGK 241 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 G FE+A GGT+FLDEIG+MPL +Q++LLRVL++++ RVGG VDVRVI+AT+ N+ Sbjct: 242 IGKFELADGGTIFLDEIGDMPLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNI 301 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 E+ ++ FR DLFYRL+ + L +PPLRER DI + + SL L++ R Sbjct: 302 EDKVRNNEFRADLFYRLNTISLIIPPLRERYEDISLIVDK----SLKNLNSSEYGNKRFS 357 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQ-FMQLLLPELARESAKTP 490 QA +T+ + YDWPGNIREL N++ERL + DL + ++ L + E K+ Sbjct: 358 SQAMQTLTM-YDWPGNIRELLNVVERLFFLVD----SDLVEENHVKQALSGINSEERKSN 412 Query: 491 APRL-----LTPQ----QALEKFNGDKTAAANYLGISRTTFWRRLK 527 L LT + ALE NG+K AA LGI RTT ++++K Sbjct: 413 TNALEDQIHLTEKDAIINALESCNGNKAQAAKLLGIHRTTLYQKMK 458 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 146/347 (42%), Positives = 210/347 (60%), Gaps = 25/347 (7%) Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 F DA ++ +M R R + T + D++G SPQ+ +A++ ++VLI Sbjct: 290 FQDAGNIQQMEARIRREIYARGHVAT-FTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLIL 348 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GETGTGKE+ AQ+IH + + PFVA+NC A+ +LE+ELFGY GAFTG Sbjct: 349 GETGTGKEVFAQSIHNA--------SARANGPFVAINCAALPSQILESELFGYVGGAFTG 400 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + + G+ GLFE+AHGGT+FLDEI EM Q +LLRVL+EK+V R+G + +PVDVRVI+ Sbjct: 401 ASQKGKPGLFELAHGGTIFLDEIAEMDYVTQGKLLRVLQEKKVMRLGSDRVIPVDVRVIA 460 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ NL +++ +FR DL+YRL++LRL+LPPLRER ADI+ AE FL+ AA + + Sbjct: 461 ATNQNLSRLVRENKFRADLYYRLNVLRLKLPPLRERGADIIRYAEFFLEKHSAAQNRRLA 520 Query: 426 ---AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL 482 AAL + L + WPGN+REL+N +ER+ ++V P + + +L + Sbjct: 521 FTPAALER--------LARHPWPGNVRELQNTIERI---VAVCRQPQVDAGLVAQMLEDD 569 Query: 483 ARESAKTPAPRLLTPQ--QALEKFNGDKTAAANYLGISRTTFWRRLK 527 A + A Q QAL G + AA LG+SR+T WR++K Sbjct: 570 ADSGIEVAAADSEKEQIRQALAIAKGKQGEAARLLGVSRSTLWRKMK 616 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 10/127 (7%) Query: 42 IQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLK-SRLSVPVILIKPSGYDVLQALAKA 100 I+ G A I +KL + + II+ G + +K + L V ++ + +G+DV++ + +A Sbjct: 30 IERGLLSAGVRIARKLVEDGVEVIISRGGTASAIKDAGLPVTIVEVPITGFDVIRTVEQA 89 Query: 101 GKLTSSIGVVTYQETIPALVAFQKTFN--LRLDQRSYITEEDARGQINELKA--NGTEAV 156 + + IGVV + P++V L +D R YI ++ + + L+A G + V Sbjct: 90 KQYGTRIGVVAF----PSMVMGIDCLGPILGVDIRQYIITDEFQAESRVLQAFREGADVV 145 Query: 157 VGAGLIT 163 VG G+IT Sbjct: 146 VG-GVIT 151 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 145/334 (43%), Positives = 200/334 (59%), Gaps = 27/334 (8%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 L +Y D++ QSP ME V + +A ++ VLI GETGTGKEL AQ+IH Sbjct: 315 GLYAKYQFSDIIHQSPVMEHVIERAEKFAAVTSNVLIYGETGTGKELVAQSIHNA----- 369 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 +KS PFVA+NC + E+LLE+ELFGYEEGAFTG+ +GG+ GLFE AHGGTLFLDE Sbjct: 370 ---SKRKSGPFVAINCASFPENLLESELFGYEEGAFTGAVKGGKPGLFEQAHGGTLFLDE 426 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 + E+P+ Q +LLRVL+E+EV RVGG + V +DVR+I+AT+ NL++ G FR DL YR Sbjct: 427 VSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATNKNLKQMTLDGLFREDLLYR 486 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 L +L L LPPLR+R DI LAE + L F + + T+L Y + GN Sbjct: 487 LDVLNLPLPPLRKRREDIRLLAEHY----LMEYKEQFETCADHFTEDAMTLLSSYPFMGN 542 Query: 448 IRELRNMMERLAL--------FLSVEPTPDLTPQFMQLLLP-ELARESAKTPAPRLLTPQ 498 IRELRN++ER+++ L VE + L Q+ ++ R + AP + Sbjct: 543 IRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTAGQVGRIQDQAAAPAYIRNI 602 Query: 499 QA------LEKFNGDKTAAANYLGISRTTFWRRL 526 Q L++ +K+ A LG++RTT WR++ Sbjct: 603 QKEEIERLLKECGYNKSEVARRLGLNRTTLWRKM 636 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 156/380 (41%), Positives = 212/380 (55%), Gaps = 31/380 (8%) Query: 166 AEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATR---NALRTRYVLGDMLGQS 222 A EA G + Y +L + + + R D TR AL R D++GQS Sbjct: 93 AVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEALTVRSQFEDLIGQS 152 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 QM V + + + S+A VLI+GE+GTGKEL A+AIH R +K PFVAVN Sbjct: 153 TQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHY--------RSARKDKPFVAVN 204 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 C A+ E+LLE+ELFG+ +G+FTG+ G + GLFE A GGT+FLDEIG++P Q RLLRV Sbjct: 205 CSALTETLLESELFGHVKGSFTGAT-GNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRV 263 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 L+E EV RVG ++PV VDVRVI+ATH +L +QG+FR DLFYRL+++ + LPPLR+R Sbjct: 264 LQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRP 323 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 D+ LA FLK+ + + + ++A L W GN+REL N++ER + Sbjct: 324 EDVPLLAHHFLKLYASKADKKVTGISPRAMEA----LTCNRWTGNVRELENVIERAVVLT 379 Query: 463 SVE--PTPDLTPQFMQLLLPELARE----------SAKTPAPRLLTPQ---QALEKFNGD 507 E DL P F P+ E AK A R + LEK N + Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 508 KTAAANYLGISRTTFWRRLK 527 ++AA G+ R+ F R LK Sbjct: 440 VSSAARAAGVDRSNFRRLLK 459 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 141/330 (42%), Positives = 198/330 (60%), Gaps = 38/330 (11%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M G+SP +++ Q + VLI GE+G GKE+ A+AIH +A + K+ P Sbjct: 237 MNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIH-------EASEAAKA-P 288 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+++NCGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q Sbjct: 289 FISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQV 348 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ LQ+PP Sbjct: 349 KLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLQIPP 408 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI+ L SFL S ++ +R + LLHY+WPGNIRELRN++ER Sbjct: 409 LRERREDIIELTYSFLN----DFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVER 464 Query: 458 LALF-----LSVEPTPDLTPQFMQ---------------LLLPELARESAKTPAPRLLTP 497 L +F + E P T + + L L E E K R Sbjct: 465 LVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER---- 520 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL NG+K A LG++R T + RLK Sbjct: 521 --ALRILNGNKLECAKQLGVTRATLYNRLK 548 >UniRef50_A8MEN4 Putative sigma54 specific transcriptional regulator n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MEN4_ALKOO Length = 452 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/357 (39%), Positives = 211/357 (59%), Gaps = 21/357 (5%) Query: 176 IYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLY 235 I A + Q + D M +R + L RY D+L +S ME++ +T LY Sbjct: 104 IIGAVAIFQGVKEVQD-NEMEIRKTL---IQKGLTARYSFEDILYKSKWMEKIVKTAKLY 159 Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 + + VLI GE+GTGKEL AQ+IH+ ++S PF+A+NC A+ ES+ EAEL Sbjct: 160 SETDLPVLITGESGTGKELFAQSIHK--------NSSRRSAPFLAINCAALPESVFEAEL 211 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGY E +FTG+++GG+ GLF+ AH GT+FLDEIGE+PLP+Q++LLRVLEEK+V VG Sbjct: 212 FGYAEASFTGAQKGGKKGLFQQAHKGTIFLDEIGELPLPVQSKLLRVLEEKQVHPVGSDI 271 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 + +DVRVI AT+ +L + ++G FR DL +RL+ L L +PPLR+R D+ LA FL Sbjct: 272 LINIDVRVIVATNRDLIHEAEKGNFRLDLLHRLNTLTLSIPPLRQRSEDVEVLARDFLSK 331 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFM 475 L + ++Q L+ L ++ GN+REL+N++ER A+ L+ + + M Sbjct: 332 KYPKLYSENKVIVQQLLEQ----LKNHSLMGNVRELKNIIERFAILLNGGMISEDIDEVM 387 Query: 476 QLLLPELARESAKTPAPRL-----LTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++ + + A +L T + AL G++ AA LGIS +T WRR+K Sbjct: 388 RQVIYQAQFHTNTDIAMQLEKEEMETIKNALISTKGNRAEAAKILGISESTLWRRIK 444 >UniRef50_A8RUM4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUM4_9CLOT Length = 625 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 140/320 (43%), Positives = 198/320 (61%), Gaps = 23/320 (7%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 RY D+ G+SP M +T Y+R+S+ +L+ G++GTGKE+ AQ+IH + Sbjct: 319 RYRFDDITGESPVMISTVETARRYSRTSSNILLIGQSGTGKEMFAQSIHND--------S 370 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 ++ PFVAVNC AI E LLE+ELFGY GAFTG+ R G+AGLFE+AH GTLFLDEIGE+ Sbjct: 371 QRRRMPFVAVNCAAIPEQLLESELFGYVPGAFTGAHRDGKAGLFELAHKGTLFLDEIGEI 430 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 LPLQ +LLRVL+E+E+ RVGG +PVD+R+++AT+ NLE+ + +FR DL YRL +L Sbjct: 431 SLPLQAKLLRVLQEREIMRVGGDSVIPVDIRILAATNQNLEQLAAERQFREDLLYRLDVL 490 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 R+ +P L +R DI LA+S++K + + A + L DWPGN+R+L Sbjct: 491 RINIPSLNQRREDISLLADSYMKRAFPDIRITDEA---------KAYLEQMDWPGNVRQL 541 Query: 452 RNMMERLALFLS-VEPTPDLTPQF-MQLLLP--ELARESAKTPAPRLLTPQQALEKFNGD 507 N ERLA+ + DL +Q +P + S + R++T A ++ Sbjct: 542 FNFCERLAVLCNGFAVDADLVAAVSLQGGIPLGTGSVLSDEEDEQRIITKTLASCHYHKG 601 Query: 508 KTAAANYLGISRTTFWRRLK 527 TA A LGISR+T WR+L+ Sbjct: 602 NTAKA--LGISRSTLWRKLR 619 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 250 bits (639), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 140/331 (42%), Positives = 208/331 (62%), Gaps = 20/331 (6%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 H + + R+ +L + P M++++++ A+ + VLI GE+GTGKEL A AIH Sbjct: 361 HQQLQKSETARFTWDHILSKHPYMDKLKKSAAKAAKGRSTVLIRGESGTGKELFAHAIHN 420 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 AR D + FV VNC AI E LLE+E FGY+EGAFTG+++ G+ G F++A+GG Sbjct: 421 SS-ARSDGK-------FVIVNCAAIPEDLLESEFFGYDEGAFTGAKQRGKVGKFDLANGG 472 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+M + LQ +LLRVL+E+E RVGG+ + VDVR+I+AT+ +LE+ +++G FR Sbjct: 473 TLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAATNRDLEKMVKEGEFR 532 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL+++ L++PPLRER+ D+ L S L + L ++ + + S LL Sbjct: 533 EDLYYRLNVISLKIPPLRERIHDVEYLT-SQLMIELNSMLGTSITGISPKAKES---LLQ 588 Query: 442 YDWPGNIRELRNMMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLT 496 Y+WPGN+REL+N++ER F + VE PD QL +P+ + A L Sbjct: 589 YNWPGNVRELKNILERAMTFAEHGNIQVEDLPDYLID--QLTIPKKEKNGLAEDA-ELEA 645 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++AL + NG+K AA LGISR+ + +LK Sbjct: 646 IRKALTQANGNKAQAARLLGISRSGLYEKLK 676 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 143/327 (43%), Positives = 201/327 (61%), Gaps = 25/327 (7%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 RT Y L +LG SP + Q ++ A + + VLI GE+GTGKEL A AIH Sbjct: 147 RTNYSLDSILGDSPDIIQAKRLAEQAAGADSPVLIMGESGTGKELFAHAIH--------G 198 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + S V VNC AI LLEAELFGYEEGAFTG+R+ G+AG FE+AHGGT+FLDEIG Sbjct: 199 LSQRGSGALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGKAGKFELAHGGTIFLDEIG 258 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MPLP+Q ++LRVL+E+EV RVG ++P VD R+I AT+ +L + M+QG FR+DL+YR++ Sbjct: 259 DMPLPMQIKILRVLQEREVERVGSNRPKKVDFRLICATNRDLPKLMRQGLFRQDLYYRIN 318 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 ++ L+LPPLR+ DI PL + F ++ + P + L + +L Y WPGN+R Sbjct: 319 VMTLKLPPLRDCRDDIFPLFQHFSRILGREKTPP------KILPGVKEILEKYSWPGNVR 372 Query: 450 ELRNMMERLALFL---SVEPT--PDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKF 504 ELRN+ ER + +V P PDL+ Q +LP++ E A A ++ +E+ Sbjct: 373 ELRNVTERALIVCRDNTVSPADLPDLS---QQEVLPQVIEEKASLKALMDQAEKKIIEQA 429 Query: 505 ---NGDKTAAANYLGISRTTFWRRLKS 528 + AA LGI RT ++++K Sbjct: 430 LVQASSRAEAARNLGIHRTGLYQKMKK 456 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 140/330 (42%), Positives = 197/330 (59%), Gaps = 38/330 (11%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M G+SP +++ Q + VLI GE+G GKE+ A+AIH +A + K+ P Sbjct: 153 MNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIH-------EASEAAKA-P 204 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+++NCGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q Sbjct: 205 FISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQV 264 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ L +PP Sbjct: 265 KLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPP 324 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI+ L SFL S ++ +R + LLHY+WPGNIRELRN++ER Sbjct: 325 LRERREDIIELTYSFLN----DFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVER 380 Query: 458 LALF-----LSVEPTPDLTPQFMQ---------------LLLPELARESAKTPAPRLLTP 497 L +F + E P T + + L L E E K R Sbjct: 381 LVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIER---- 436 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL NG+K A LG++R T + RLK Sbjct: 437 --ALRILNGNKLECAKQLGVTRATLYNRLK 464 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/312 (45%), Positives = 194/312 (62%), Gaps = 22/312 (7%) Query: 222 SPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 281 +P M V +A A +LI+GETG GKE A AIH A ++ PFVAV Sbjct: 323 APAMRAVIDEARRFAAVDATILIQGETGVGKEYFAHAIH--------AASPRRYGPFVAV 374 Query: 282 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 341 NC AI ++LE+ELFGY EGAFTG+++GG+ GLFE AHGGT+FLDEIGEM LQ RLLR Sbjct: 375 NCAAIPATVLESELFGYAEGAFTGAKKGGKVGLFEQAHGGTIFLDEIGEMAEELQARLLR 434 Query: 342 VLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRER 401 VL+E E+ R+G + +PVD+RVI+AT+ +L + GRFR DL+YRL +L L++PPLR R Sbjct: 435 VLQEHEIYRIGDDRVIPVDIRVIAATNRDLRAMVAAGRFREDLYYRLDVLALEVPPLRAR 494 Query: 402 VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL-HYDWPGNIRELRNMMERLAL 460 DI PL F++ + + + A+ QG+ LL YDWPGN+REL N+++RL Sbjct: 495 KQDI-PL---FVRKFIDEFNHKYRRAV-QGIDDEGLALLAAYDWPGNVRELHNVVDRL-- 547 Query: 461 FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL-----LTPQQALEKFNGDKTAAANYL 515 +++ P +T ++ L R S + AP + + AL + NG+K AA L Sbjct: 548 -MALAAGPVITATEVRQCLERRLRSSDRPAAPGMKAAEAAAIRDALARANGNKQQAARLL 606 Query: 516 GISRTTFWRRLK 527 GI R+T WR+L+ Sbjct: 607 GIGRSTLWRKLR 618 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEE- 139 VP++ +K +G+D+L+AL +A + +V QE + L A ++ + R ++ Sbjct: 69 VPLVEVKFTGFDLLRALLEAQAAGGPVAIVDRQEVLAGLAAIEEILGVPDKARKIAIDDY 128 Query: 140 -DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 R +++ G ++G + D AE G+ GI + S + AL+++R L Sbjct: 129 RQYRAGVDQAVRAGAACIIGNQAVVDEAEAYGLRGILLRSGP---EGIRHALELSRQML 184 >UniRef50_C5EVL5 PAS:Helix-turn-helix motif-containing protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EVL5_9FIRM Length = 624 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 144/343 (41%), Positives = 201/343 (58%), Gaps = 49/343 (14%) Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 +S + E + QT YA S A++I GETG+GKE+ AQ+IH R++A FVA Sbjct: 278 KSKKFEDMLQTARQYALSDEAIVILGETGSGKEMLAQSIHNYSTRRNNA--------FVA 329 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 VNC I E+LLE+ELFGY EGAFTG+++GG+ G FE+AH GT+FLDEIGE+ L LQT+LL Sbjct: 330 VNCATINENLLESELFGYAEGAFTGAKKGGKEGFFEMAHKGTIFLDEIGEISLSLQTKLL 389 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RV++EKE+ RVGG + +P D R+++AT+ +L E +Q+ +FR DL+YRL++L L++PPLRE Sbjct: 390 RVIQEKELLRVGGTKMIPFDARILTATNRDLWEMVQKKQFREDLYYRLNVLELEIPPLRE 449 Query: 401 RVADILPLAESFLKVSLAALSAPFSAA-LRQGLQASETVLLHYDWPGNIRELRNMMERLA 459 DILPL FL A PF A Q + E++L Y WPGNIRE+ N ++ + Sbjct: 450 HSEDILPLFLMFL-----ARQNPFLAENAGQSSRHLESILKAYSWPGNIREMENFVKGIC 504 Query: 460 LFLS----------VEPTPDLTPQFMQ---LLLPELARE--------------------- 485 + S + L + M+ + P A++ Sbjct: 505 ILTSAGNMDIGEFLIFVRESLEKRIMRQSGISRPHTAKQRDKLGDMENNSAVALPVGDGR 564 Query: 486 -SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 K L Q AL+ G+ T AA +LGISR+T WR+LK Sbjct: 565 LKGKALEYEYLQIQDALKATGGNCTQAARHLGISRSTLWRKLK 607 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Query: 63 DAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTY-QETIPALVA 121 D +++G N LK + PVI I+PS YD+L AL+KA + ++ Y + + L Sbjct: 5 DVFVSSGHNAETLKKLVDRPVITIEPSIYDILLALSKAKTMDDKPIIIPYGNDYLKPLRE 64 Query: 122 FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT 181 + ++ + QRSYI ED I E K G V+G+GL DLAE+ GM IF+Y + Sbjct: 65 IENILSIVIVQRSYIEIEDLNRIIIEEKEKGRRCVIGSGLACDLAEKHGMKSIFLYPQES 124 Query: 182 VRQAFSDALDMTRMSLRHNTHDATRNALRT 211 ++ A+D ++L N+ R L T Sbjct: 125 IKAFLQIAVD---LALSLNSEILKRKRLET 151 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 170/462 (36%), Positives = 251/462 (54%), Gaps = 51/462 (11%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 +L+K GY+V A QE + AL++F+ L Q +T +A Sbjct: 20 LLLKEDGYEVQTA-------------ANGQEAVDALLSFRPDVILLDQQMPVLTGVEALE 66 Query: 144 QINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAF-SDALDMT-RMSLRHNT 201 +I L N + A LA +A G + + + + F +D L +T ++ H Sbjct: 67 KIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDF----IEKPFDNDKLLLTVSRAVEHCR 122 Query: 202 HDATRNALRTRYVLGDM----LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 L+ + LGDM +G+ + QV + A + A VLI GE+GTGKEL A Sbjct: 123 MKGEIKHLKNK--LGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAW 180 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH R + S PFVA+NCGAI +L+E+ELFG+E+GAFT ++ +AG FE Sbjct: 181 AIH--------DRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKET-QAGTFER 231 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+GGTLFLDEIGE+PL Q +LLRVLEE+++TR+GG + +PV+VR+++AT+ NLEE+++ Sbjct: 232 ANGGTLFLDEIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRL 291 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G+FR DL YRL++ +QLPPLRER DI LA FL+ + L+ + + + Sbjct: 292 GKFRLDLLYRLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQ--- 348 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVE--------PTPDLTPQFMQLLLPELARESAKT 489 L YDWPGN+R+L N ++ A+ L V+ P + Q +L P+ A E Sbjct: 349 -LCAYDWPGNVRDLENAVQS-AMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSL 406 Query: 490 PAPRLLTPQ----QALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + AL+K N ++T A L ISR T + ++K Sbjct: 407 RDTNSLAEKARILSALQKHNYNRTLTAEALNISRKTLFNKMK 448 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 215/367 (58%), Gaps = 48/367 (13%) Query: 186 FSDALDMT----RMSLRHNTHDATRNAL----RTRYVLGDMLGQSPQMEQVRQTILLYAR 237 F D D +++ NTH N R +Y D++G S + ++ A Sbjct: 192 FKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESNNIKSLAKKSAN 251 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 +++ VLI GE+GTGKEL A +IH + R G PF+ +NCGAI LLE+ELFG Sbjct: 252 TNSNVLIVGESGTGKELYAHSIHNA----SNRRLG----PFIKINCGAIPAELLESELFG 303 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE+GAFTG+++GG+ G FE+A+GGT+FLDEIG+MP+ +Q +LLRV++E+EV +VGG+ Sbjct: 304 YEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGGNILK 363 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 +DVR+I+AT+ NLE+ +++ +FR DL+YRL+++R+ +P LRER DIL +++ +K Sbjct: 364 KIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVK--- 420 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS----VEPT------ 467 +S ++ + ++ L +Y+WPGNIREL N++ER A L ++P Sbjct: 421 -KVSHRLGICIKGISKEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEI 479 Query: 468 --------PDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISR 519 P ++++ ++ E+ +E LEK NG+K + LGISR Sbjct: 480 LKSYIVKAPTKENKYLKDIISEVEKE----------VICNCLEKNNGNKNKTSKILGISR 529 Query: 520 TTFWRRL 526 ++++ Sbjct: 530 ANLYKKI 536 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 218/393 (55%), Gaps = 36/393 (9%) Query: 152 GTEAVVGAGLITDL--AEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNAL 209 G +AVV I D E G G+ ++ + +D + L H R Sbjct: 88 GEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDLADKNKLLEKKLDHYKQ-RVRQIY 146 Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 T+Y ++ S +ME +Q AR+ VLI GE+G GKE+ AQAIH E Sbjct: 147 STKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGKEIFAQAIHNE------- 199 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + HPF+ VNC AI E+LLE+ELFGY+ GAFTG+ + G+ G FE+A GTLF DEIG Sbjct: 200 -SHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKFELADKGTLFFDEIG 258 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MP +Q +LLRV++E EV R+GG + VDVR+I+AT+ NLEE + FR DLFYR++ Sbjct: 259 DMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELVATDDFREDLFYRIN 318 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 +L L +PPL++R DI LAE FL + + +Q Q + VL YDWPGNIR Sbjct: 319 VLTLNIPPLKDRKEDIALLAEDFLYETKQEMGEN-----KQISQEAVEVLQKYDWPGNIR 373 Query: 450 ELRNMMERLALF--LSVEPTPDL------------TPQFMQLLLPELARESAKTPAPRLL 495 +L+N+++RLA+ +V D+ +P + + L E+ + K Sbjct: 374 QLKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGLNEIVEQVEKK------ 427 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ LE ++ +K+ AA+ L I R+T +R++K Sbjct: 428 VIRETLELYDFNKSMAASILNIPRSTLYRKMKK 460 >UniRef50_B6WVJ9 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVJ9_9DELT Length = 642 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 158/348 (45%), Positives = 212/348 (60%), Gaps = 37/348 (10%) Query: 199 HNTHDATRNALRTR-----------YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGE 247 +NT D +N + R ++ D++G S + Q + +A S VL+ G+ Sbjct: 309 NNTVDIQKNERQVRQNIYQKGKRRYFMFNDIIGDSAVITQAKLMGQRFADSDGPVLLIGD 368 Query: 248 TGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSR 307 TGTGKE+ AQAIH H RQ FV+VNC A+ ESLLE+ELFGYEEGAFTG+R Sbjct: 369 TGTGKEMFAQAIHA-----HSRRQ---EAAFVSVNCAAVPESLLESELFGYEEGAFTGAR 420 Query: 308 RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 367 RGG+ GL E+AHGGTLFLDEIGEMPL LQ RLLRVL++K VTR+G + V V+VR+I AT Sbjct: 421 RGGKTGLVELAHGGTLFLDEIGEMPLRLQARLLRVLQDKVVTRLGSTRFVQVNVRIICAT 480 Query: 368 HCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAA 427 + NL +QG+FR+DLFYR++ L L++P L R DI P+ ++L+ FS + Sbjct: 481 NRNLFAMARQGQFRQDLFYRINTLLLKIPSLAARKEDIGPIVLAYLRRLRGEGHRKFSIS 540 Query: 428 LRQGLQASETVLLHYDWPGNIRELRNMMER---LALFLSVEPTPDLTPQFMQLLLPELAR 484 +A E L +DWPGN+REL ++++R LA L ++ + L F +L E Sbjct: 541 ----GEAIEK-LEQHDWPGNVRELLHVVDRAIVLARQLVIQASDIL---FDADILDEEDP 592 Query: 485 ESAKTPAPRLLTPQQA-----LEKFNGDKTAAANYLGISRTTFWRRLK 527 E+ PA R T A L+K+ +KT AA LGISRTT WRR+K Sbjct: 593 EA--FPASRGETASCARLEAVLQKYRYNKTQAAEALGISRTTLWRRMK 638 >UniRef50_B7VNT5 Sigma-54 dependent response regulator n=10 Tax=Vibrionaceae RepID=B7VNT5_VIBSL Length = 509 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 138/337 (40%), Positives = 206/337 (61%), Gaps = 34/337 (10%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +R++ +++G S + +Q++ I +A S A+VLIEGE+GTGKEL A+ +H Sbjct: 176 SRHIKTELIGNSDKTKQLKLLISQFAPSRASVLIEGESGTGKELVARGVHE--------- 226 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 K++ PFV +NCGAIA LLE+ELFG+ GAFTG+++ R GLF +A GGTLFLDEIGE Sbjct: 227 ASKRTGPFVPINCGAIAPELLESELFGHTSGAFTGAKKN-REGLFRVASGGTLFLDEIGE 285 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPLP+Q LLRVLE++ + VG + + VDVRV++AT+ NL++++++G FRRDLFYRL++ Sbjct: 286 MPLPMQAALLRVLEQRTIRPVGSEKEIAVDVRVVAATNRNLQQEVEKGHFRRDLFYRLNV 345 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 L++ + PLRER +D++ L F ++ + LS P + + A + Y+WPGNIRE Sbjct: 346 LKIDVVPLRERPSDLIELVPYFTRLLASELSVPVPNWAHEDILA----MNEYEWPGNIRE 401 Query: 451 LRNMMERLALF------LSVEPTPDLTPQFMQLL------LPELARESAKTPAPRLLT-- 496 L+N++ER L E D P + + +P L A P T Sbjct: 402 LKNLVERCILLDKPPAHYWREINGDPAPTSISVTVSHGAEIPNLNNVDAAEGYPNTWTLK 461 Query: 497 ------PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +Q + +G+K+AAA LG++R T R+ K Sbjct: 462 EVEKSHIEQLVSFHDGNKSAAARDLGVARKTLERKYK 498 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 134/325 (41%), Positives = 200/325 (61%), Gaps = 18/325 (5%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 +N + Y ++GQ +V + + S + +LI GE+GTGKE+ AQ+IH Y + Sbjct: 326 KNHGQAYYTFDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHN-YSS 384 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 R D PF+A+NCGAI + L+E+ELFGYEEGAFTG+++GG G FE+A GGT+ L Sbjct: 385 RVDG-------PFIALNCGAIPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIML 437 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGEMPL +QT+LLRV++E +T++G + +PVDVR+I+AT+ +L+++++ GRFR+DL+ Sbjct: 438 DEIGEMPLDMQTKLLRVVQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLY 497 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL++L L LPPLRER DI + +K L + + L+ + YDWP Sbjct: 498 YRLNVLPLFLPPLRERKGDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINS----YDWP 553 Query: 446 GNIRELRNMMERLALFLSVEPTPDLTPQ---FMQLLLPELARESAKTPAPRLLTPQQALE 502 GNIREL N++E L ++ E P Q +L ++ +S K + L+ Sbjct: 554 GNIRELENVVE---LIINTESIPSGYFQNGNCYNEVLINISEDSLKLDFAEKEHLVKVLK 610 Query: 503 KFNGDKTAAANYLGISRTTFWRRLK 527 KF G+ T +A LGI R T + ++K Sbjct: 611 KFKGNITRSAEALGIRRNTLYSKIK 635 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 144/335 (42%), Positives = 199/335 (59%), Gaps = 40/335 (11%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++GQS ++ +V + L A S + +L+EGE+GTGKE+ AQAIH +R DA Sbjct: 347 DIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFAQAIHNAS-SRRDA------- 398 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PF+AVNCGAI LL +ELFGY +GAFTG+RRGGR G FE+A GGT+FLDEIGEMPL Q Sbjct: 399 PFIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGTIFLDEIGEMPLGKQ 458 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 LLRVL+E+ VTR+GG + +PVDVRVI A++ L E++++G FRRDLFYRL+++ + LP Sbjct: 459 VSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRRDLFYRLNVIAITLP 518 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH----YDWPGNIRELR 452 PLR+R DI L FL+ S L ET ++H YDWPGN+REL+ Sbjct: 519 PLRQRKEDIPLLFHHFLQ--------DISQKLGVKTPQVETEVIHSLQDYDWPGNVRELQ 570 Query: 453 NMMERLA-LFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEK-------- 503 N++ER+ + + + PQ + +E A +LL+ K Sbjct: 571 NVVERMVNIAEESRISREHLPQEISHPAARSLKELANCEDSQLLSLSTERRKRKEMEQER 630 Query: 504 -----------FNGDKTAAANYLGISRTTFWRRLK 527 G+ + A LG+SR T +R++K Sbjct: 631 EQEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIK 665 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 146/327 (44%), Positives = 206/327 (62%), Gaps = 30/327 (9%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 G ++G SP M++V +TI A S VLI+GE+GTGKEL A+AIH + RQGK Sbjct: 137 GTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHY-----NSPRQGK-- 189 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 PFV ++C AI E+LLE+ELFG+E+GAFTG+ + G FE+A GGT+FLDEIG++ L Sbjct: 190 -PFVKIDCTAIPENLLESELFGHEKGAFTGAHTR-KLGKFELADGGTVFLDEIGDISPAL 247 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q +LLR L+EK RVGG + VDVR+I+AT+ +LEE ++ G FR DL+YRL+++ ++L Sbjct: 248 QAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVEIKL 307 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 PPLRER DI+ L + F+ +S + F + ++ +LL Y+WPGN+RELRN+ Sbjct: 308 PPLRERKEDIMLLVDYFVSLS----NRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVC 363 Query: 456 ERLALFLSVEP-TPDLTPQFMQLLLPELARESAKTPAP-RLLTPQQ-------------A 500 ER L TP+ P++ LL R A PA R + P + A Sbjct: 364 ERAVLMARGNVITPESLPEY--LLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRA 421 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 LE++ G+KTA A LG+SRTT + ++K Sbjct: 422 LEEYRGNKTAVARALGMSRTTLYAKMK 448 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 217/382 (56%), Gaps = 50/382 (13%) Query: 171 MTGIFIYSAATVR-----QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 + GI S +R Q ++ L+ R +R L +Y D++G S + Sbjct: 340 VDGILKGSVGVIRDVSEIQKLTNELNRARQIIR---------TLEAKYSFDDIVGNSDET 390 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 + L A + A VL+ GE+GTGKEL A AIH +K + FV VNC A Sbjct: 391 TAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHN--------GSNRKYNKFVRVNCAA 442 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 I+E+LLE+ELFGYEEGAF+G++RGG+ G FE A+ G++FLDEIGE+ Q +LLRVL+E Sbjct: 443 ISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQE 502 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 KE+ +VGG + +P++VRVI+ATH NLE+ + +G+FR DL+YRL+ + +Q+P LR+R DI Sbjct: 503 KEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDI 562 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH-YDWPGNIRELRNMMERLALFLSV 464 +A+ ++ ++ + + +GL S + L Y+WPGN+REL N++ R +F++ Sbjct: 563 PTIADRLIQ----KINQDYGRNV-EGLTDSAILYLQSYEWPGNVRELENILGRAIIFMNY 617 Query: 465 EPT-------PDL-----TPQFMQLLLPELARESAKTPAPRLLTP------QQALEKFNG 506 T P L LLPEL + P L+T + LE+F+G Sbjct: 618 NETYIDVHHLPPLHNEEQVESKQSHLLPELEEK----PLEHLVTEFEGNIIHEYLERFDG 673 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 +KT A LGIS + +L+ Sbjct: 674 NKTQTAKALGISVRNLYYKLEK 695 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 247 bits (631), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/328 (43%), Positives = 198/328 (60%), Gaps = 30/328 (9%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 LG +LG SP + ++++ + A SS+ VLIEGE+GTGKEL A+AIH+E RHD Sbjct: 266 LGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKES-NRHD------ 318 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PF+A+NCGAI +SLLE+ELFGY GAFTG+R GR G FE+A+GG LFLDEI MPL Sbjct: 319 -QPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFELANGGVLFLDEISSMPLY 377 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLRVL+E+ +TR+G ++ + +D+RVI+AT+ NL E + FR DL+YRL ++ + Sbjct: 378 LQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFE 437 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLRER+ D+ L E F + F LR +L Y WPGNIRE N Sbjct: 438 IPPLRERLEDVDMLTEHFFR----KYGERFGKNLRHIDPQCMDMLKSYPWPGNIREFENA 493 Query: 455 MERLALFLSVEP-----TPDLTPQFMQLLL-----PELARESAKTPAPRL--LTPQQALE 502 +E +++ P TP + P F+ L +L R+ P L Q+AL+ Sbjct: 494 IE---FIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALD 550 Query: 503 KF---NGDKTAAANYLGISRTTFWRRLK 527 +F G K AA LGI T +R+++ Sbjct: 551 RFGSTTGGKKLAAERLGIGLATLYRKIQ 578 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 119/247 (48%), Positives = 179/247 (72%), Gaps = 14/247 (5%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y D++G+S QM + ++ A S ++VLI GETGTGKEL AQ+IH + Sbjct: 223 KYNFTDIIGESQQMRKAKELGEAAASSDSSVLICGETGTGKELFAQSIHNASY------- 275 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 + S PF+A+NC A+ SL+E+ LFGY EGAFTG+++GG G+FE A+ GTLFLDEI EM Sbjct: 276 -RCSKPFIAINCAALPPSLIESNLFGYVEGAFTGAKKGGATGVFEKANNGTLFLDEISEM 334 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 L LQ++LLRVL+EKEVTR+GG + +P+++R+I+AT+ NLE+ +Q+G+FRRDLF+RL+++ Sbjct: 335 DLDLQSKLLRVLQEKEVTRIGGRKVIPLNLRIIAATNRNLEDMIQKGQFRRDLFFRLNVI 394 Query: 392 RLQLPPLRERVADI-LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 ++LPPLR+ DI L + E+ +K +++ F A++ + + +L++YDWPGN+RE Sbjct: 395 EVKLPPLRDMKEDIPLLVNETIIK-----MNSIFGKAIKGVDKEALEMLINYDWPGNVRE 449 Query: 451 LRNMMER 457 L N +ER Sbjct: 450 LYNCIER 456 >UniRef50_C3WG76 Sigma-54 dependent transcriptional regulator n=2 Tax=Fusobacterium RepID=C3WG76_FUSMR Length = 588 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 131/354 (37%), Positives = 210/354 (59%), Gaps = 44/354 (12%) Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + N + T N + + L D+ G S +++++ IL A +S+ VLI GE+GTGKEL A Sbjct: 251 INENIAEITNNNVIS---LNDIYGNSEATKKLKENILKIADTSSTVLITGESGTGKELVA 307 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +++H + +K+ PFV +NC AI +SLLE+ELFGY +GAFTG+ GR G FE Sbjct: 308 RSLH--------SHSNRKNKPFVVINCSAIPDSLLESELFGYVKGAFTGANNNGRIGKFE 359 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+ G +FLDEIG+MPL LQ ++LRV++EK++ R+G ++ + +D+++I+AT+ NLEE ++ Sbjct: 360 LANTGVIFLDEIGDMPLYLQAKILRVIQEKKIERIGSNKSIDLDIKIIAATNVNLEEKIK 419 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + +FR DL+YRL+++ +L PLRER DILP+ E +K +S ++ ++ + Sbjct: 420 EQKFRSDLYYRLNVIPFKLLPLRERKEDILPIIEKLIK-KYNRISGKNIISIDDEVKQA- 477 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE-LARESAKTP--APR 493 L YDWPGN+REL N++E L ++ + LLPE ++++S P + + Sbjct: 478 --FLSYDWPGNVRELENVIE---LMFNISGNSSI---LNSSLLPENISKKSVSNPPKSSQ 529 Query: 494 LLTPQ-----------------QALEKFNGD---KTAAANYLGISRTTFWRRLK 527 ++ Q LEKF K + +GI TT +R+LK Sbjct: 530 IIIKNPSDDFENFDIIEKNYILQGLEKFGNTTEGKKIISEKIGIGLTTLYRKLK 583 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 138/316 (43%), Positives = 194/316 (61%), Gaps = 19/316 (6%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++G S M+QVR+ I A + + VL+ GETGTGKEL A+A+H++ + Sbjct: 153 ELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELVARAVHQQSL--------RAEK 204 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PFVAVNCGA+ ESL+E+ELFG+ +G+FTG+ R GLFE+AHGGT+FLDEIGE+P +Q Sbjct: 205 PFVAVNCGALPESLIESELFGHRKGSFTGAD-DHRVGLFEVAHGGTIFLDEIGELPKSMQ 263 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRVLE E+ RVG + VDVRV+ ATH NL E ++ G FR DL YR++ L +P Sbjct: 264 AKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDLMYRINTFELHIP 323 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER+ DI LA L+ L L A + + +Q +L + WPGN+REL N++E Sbjct: 324 PLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQ----LLEKHGWPGNVRELANVIE 379 Query: 457 RLALFLSVEP-TPDLTPQFMQ-LLLPELARESAKTPAP----RLLTPQQALEKFNGDKTA 510 ++ P TP+ PQ + + P+L R P + +AL++ NG+K Sbjct: 380 HASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEALDRHNGNKPE 439 Query: 511 AANYLGISRTTFWRRL 526 AA LGIS T + +L Sbjct: 440 AAEELGISLKTLYNKL 455 >UniRef50_A6TPV3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TPV3_ALKMQ Length = 627 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/323 (40%), Positives = 201/323 (62%), Gaps = 28/323 (8%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++G S +M +R A++S+ VL+ GE+GTGK + A+AIHR K+S Sbjct: 310 EIIGDSEEMRHIRMMAAKAAKTSSNVLLLGESGTGKTILAKAIHRA--------GEKESM 361 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 FV +NCG+I E+LLE+E+FGYE+GAFTG+ + G+ GLFE+A GGTLFLDEIGE+P LQ Sbjct: 362 AFVQINCGSIPENLLESEMFGYEKGAFTGANKEGKKGLFEVADGGTLFLDEIGELPSALQ 421 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LL V++ + RVGG++ + V+VR+I+AT+ NLEE+M+QGRFR DL+YR+++L + +P Sbjct: 422 VKLLHVIQHRSFYRVGGNEKINVNVRIIAATNRNLEEEMRQGRFREDLYYRINVLPIWIP 481 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL--HYDWPGNIRELRNM 454 PLR+R DI L + L + A + + L ++E +L Y WPGNIREL N Sbjct: 482 PLRQRKDDIQLLVKKLLHRTCQ------QAGVEEKLLSAEALLKLRKYHWPGNIRELENT 535 Query: 455 MERLA------LFLSVEPTPDLTPQFMQLLLPE----LARESAKTPAPRLLTPQQALEKF 504 +ER + LS + +T F+Q E +E+ + L+ + L+ F Sbjct: 536 LERAMHLSDSRILLSGQMMVKVTDSFVQYQYEEAPLPTIKEAVRKCEKELIN--ETLKHF 593 Query: 505 NGDKTAAANYLGISRTTFWRRLK 527 G++ A LGI++T F+ ++K Sbjct: 594 KGNRKKAMQQLGIAKTRFYEKIK 616 >UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Clostridium RepID=A6LVG7_CLOB8 Length = 654 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 120/255 (47%), Positives = 169/255 (66%), Gaps = 12/255 (4%) Query: 205 TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYF 264 +NA + D++G S + V + A S + VLI+GE+GTGKE+ AQA+H Y Sbjct: 305 NKNATGAFFTFNDIIGDSAAIVNVITNCKVIANSPSTVLIQGESGTGKEILAQAMHN-YS 363 Query: 265 ARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 R + + FVA+NCGAI +++E+ELFGYE+G FTG +RGG G FEIA GGTLF Sbjct: 364 VR-------RRNKFVAINCGAIPANIIESELFGYEDGTFTGGKRGGNPGKFEIASGGTLF 416 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDEIGEMP+ Q +LLRVL+ VTR+GG + +P+DVRVI+AT+ NL+ ++Q+G FR DL Sbjct: 417 LDEIGEMPIDAQVKLLRVLQNGRVTRLGGSREIPIDVRVIAATNKNLKREVQKGNFREDL 476 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDW 444 +YRL ++ + LPPLRER D+ L + FL++ S + ++ + ++ LL YDW Sbjct: 477 YYRLCVIPITLPPLRERKGDVKMLIDFFLRIK----SFQLNKSIPEIDKSLYNKLLDYDW 532 Query: 445 PGNIRELRNMMERLA 459 PGNIREL N +E + Sbjct: 533 PGNIRELENYIENIV 547 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/328 (41%), Positives = 198/328 (60%), Gaps = 26/328 (7%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +Y +LG+S +++ A ++++VLI GE+GTGKE+ A+AIH+ R Sbjct: 267 NQYSFDKVLGKSQVIKEKIDKAKQVASTNSSVLIGGESGTGKEVFARAIHQV-----SGR 321 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 +G PFVA+NC AI E+L E+E+FGYE GAFTG+ G+ G E+A GTLFLDEIG+ Sbjct: 322 KG----PFVAINCSAIPENLFESEIFGYEGGAFTGALNKGKIGKVELAENGTLFLDEIGD 377 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPL +Q +LLRVL+EK++ RVGG +PV VDVR+ISATH NL+ + +G+FR DLFYRL++ Sbjct: 378 MPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIISATHRNLKTMVMEGKFREDLFYRLNV 437 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + +QLP L+ RV DI FL +A + ++ + L++YDWPGNIRE Sbjct: 438 VNIQLPSLKYRVEDI----HIFLNQFMAEFCKENNLSIPKISMEVFHTLMNYDWPGNIRE 493 Query: 451 LRNMMERLALF-------LSVEPTPDL----TPQFMQLLLPELARESAKTPAPRLLTPQQ 499 L+N +E L +F +S P L Q++ PE +T ++ Sbjct: 494 LKNTVEHLVVFSKNGEIIMSSIPEHILEKIGDSQYVD--TPENYDLQENIKHIETVTIRK 551 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLK 527 A+E NG+K AA L I R+T + ++K Sbjct: 552 AMEVVNGNKMQAAKLLNIPRSTLYYKIK 579 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/321 (44%), Positives = 203/321 (63%), Gaps = 23/321 (7%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 + ++ +SP M+Q+ A+ SA VLI GE+G GKE+ + IH+E A H Sbjct: 245 IAGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKES-AHH------- 296 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 + PFV +NCGAI LLE+ELFGYE GAFTG++R G+ G+ E+A GTLFLDEIGE+PL Sbjct: 297 AGPFVKINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLD 356 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LL+VL+++ +TR+GG +P+ VDVRV++AT+ +L+ + +FR DLFYRL+++ L Sbjct: 357 LQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLH 416 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLRER DILPL + +L L+A + R QA LL YDWPGN+RELRNM Sbjct: 417 VPPLRERREDILPLIQHYLD----ELNAQYDLDKRLSEQAL-AALLDYDWPGNVRELRNM 471 Query: 455 MERLAL-----FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL--LTPQQALEKFNGD 507 +ERL + + + P L L +LAR K + ++A+E++ G+ Sbjct: 472 VERLVVTAPESLIRSDSLPTLLRS--SELESDLARLDIKARSAHFERKIVKEAVERY-GN 528 Query: 508 KTAAANYLGISRTTFWRRLKS 528 AAA +L +S++T RRLK Sbjct: 529 TRAAAKHLQVSQSTVVRRLKD 549 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 136/348 (39%), Positives = 212/348 (60%), Gaps = 42/348 (12%) Query: 200 NTHDATRNALRT----RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + DA +N + R L +++G+S + ++ L+ ++S++ VLI GE+GTGKEL Sbjct: 258 DKRDAIKNYNKMNKDYRIKLENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELF 317 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH H R +PF+AVNC AI ++LLE+ELFGYEEGAFTG+++GG+ G+F Sbjct: 318 ARAIHN-----HSNRV---DNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGGKLGMF 369 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+AH G++FLDEIG+M L LQ++LLRVL+EKE+ ++G V +DVR+I+AT+ +LE+ + Sbjct: 370 EVAHKGSIFLDEIGDMSLHLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKDLEKMV 429 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 Q G FR DL+YRL+++ ++LP LRER DI PL + + +S L + + Sbjct: 430 QNGTFREDLYYRLNVIPIKLPSLRERKEDI-PLI-------IKHMVKEYSKKLDKNVIDI 481 Query: 436 ET----VLLHYDWPGNIRELRNMME-RLALFLSVEPTPDLTPQFMQLLLPELARESAKTP 490 ++ ++ Y WPGNIREL+N++E + + S T ++ PQ ++ + E + Sbjct: 482 DSRVVDAMMEYKWPGNIRELQNIIEYSVNMSSSSIITMNVIPQKIK----NTSVEELEVK 537 Query: 491 APRLLTPQQALEKFNGDKT------------AAANYLGISRTTFWRRL 526 + R++ P LEK K A LGISR T +R++ Sbjct: 538 SDRII-PLDELEKIEIIKALNKYKDYKKDKELTAKALGISRATLYRKI 584 >UniRef50_B5XN53 Sigma-54 dependent transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=B5XN53_KLEP3 Length = 627 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 144/345 (41%), Positives = 207/345 (60%), Gaps = 41/345 (11%) Query: 203 DATRNALR---TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 ++ ++ LR T Y +++ QSP M QV Q L A+ V + G+TGTGKEL AQ+I Sbjct: 298 NSKKSKLRGYATSYSFDNIIAQSPIMHQVIQKARLCAQHDLPVHLLGDTGTGKELFAQSI 357 Query: 260 HREYFARHDARQGKKSH-PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 H +SH PF+A+NC AI ESLLE+ELFGY EGAFT +R+GG+ G+FE+A Sbjct: 358 HH---------VSARSHGPFIAINCAAIPESLLESELFGYAEGAFTNARKGGKPGVFEMA 408 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GT+F+DEI E PL +Q +LLRVL+EK+ +R+GG + D R+I+A++ +L + + G Sbjct: 409 TNGTVFIDEISEAPLSVQVKLLRVLQEKQFSRLGGDSLLSADFRLITASNKDLGQLIASG 468 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR+DL+YR++IL LQLPPLRER DI+ L L+ L+ A Sbjct: 469 EFRQDLYYRINILELQLPPLRERPEDIMVLIHHLLQQQNKHLTFTPDAV---------NC 519 Query: 439 LLHYDWPGNIRELRNMMERLALFLS--------VEPTPDLTPQFMQ--LLLPELARESAK 488 L +Y+WPGNIREL+ ++ RL + L ++ L+P Q L+ +LA + + Sbjct: 520 LQNYEWPGNIRELQAVIYRLIVLLEGDTVDKAVLQQISHLSPPCHQGVSLVTDLAVVADE 579 Query: 489 TPAPRLLTPQQ------ALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LL Q+ +EK +GD+T A+ LGIS TT WR+LK Sbjct: 580 SD---LLKKQEKQLIASVIEKTDGDRTKASAILGISPTTLWRKLK 621 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 5/174 (2%) Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK 124 II+ G A L++ + +PVI I + V + L +A + I + + + AL +Q Sbjct: 55 IISRGGTAALLRNNIPIPVIEIAHDFHGVYRILQEAKNKSQKIAAIGFPQFCRALRHYQS 114 Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGI-FIYSAATVR 183 N D I L NG V+G + ++A++ + I ++ Sbjct: 115 MTNDEFKICQVYNHHDIENVIKNLSENGYHMVIGGLTVAEMAKKYNLNVIEGDADNNSIE 174 Query: 184 QAFSDALDMTRMSLRHN----THDATRNALRTRYVLGDMLGQSPQMEQVRQTIL 233 QA ++A + + R N A N R + D LG+ + + T+ Sbjct: 175 QAINEAHGLLKYINRENLKLVMSHAALNQSREGIMCVDQLGEIININAIGMTLF 228 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 207/336 (61%), Gaps = 41/336 (12%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAA-VLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 G ++G SPQM+++ I A+SS+ VLI+GE+GTGKEL A+A+HR +K Sbjct: 145 GIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELVARAVHR--------LSARK 196 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 S FV +NC A+ ESLLEAELFGYE+GAFTG+ G+ GLFEIA GT+FLDEIGEM + Sbjct: 197 SGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVL 256 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLR+L+E++ RVGG Q + +DVR+I++T+ NLEE++ G FR+DL+YRL +L + Sbjct: 257 LQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIY 316 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLRER DI+ L + F+ + F + +E +LL Y WPGNIREL+N+ Sbjct: 317 VPPLRERREDIMLLVKYFIH----KYNNEFGKNICDIPPDTERILLEYGWPGNIRELKNV 372 Query: 455 MERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA-----------------PRLLT- 496 +ER L + L+P+++ + + ++ +++ A R L Sbjct: 373 VERGVL---IANGSALSPKYVANI--SVGKKESESLAGITVDGNTDCVSSDGLDARSLAF 427 Query: 497 -----PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L++ + +T AA LGI+RTT + ++K Sbjct: 428 MEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIK 463 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 182/525 (34%), Positives = 266/525 (50%), Gaps = 88/525 (16%) Query: 60 ERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQET--IP 117 E CDAI+ G N S ++VP + I P+G+D A K ++I ++T I Sbjct: 147 EGCDAIVG-GVNTCSYASSINVPNLFI-PTGHDSFWQGITAAKRAAAISRTEQEKTSRIH 204 Query: 118 ALVAFQKTFNLRLDQRSYI--TEEDARGQINELKANGTEAVVGAGLITD----------L 165 L+ K L +D YI AR ++ +E++ G ++ L Sbjct: 205 VLLNASKEGLLSIDSLRYIRMVNHSARKILHI-----SESITGMKVMDAPFPREFKKLLL 259 Query: 166 AEEAGMTGIFIYSAATVR-------------------QAFSDALDMTRMSLRHNTHDATR 206 + A IF Y + Q SD +D+ +R H Sbjct: 260 EDTACTNEIFKYGDMMLNVTKYPVMVQNSNMGIVVSFQNISDIMDLEN-DIRRKIHSKGH 318 Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 A + D++G+SP + QT Y+R+ + +L+ G++GTGKEL AQ+IH Sbjct: 319 VA---KAHFDDIVGESPAIRSTIQTAQKYSRTDSNILLIGQSGTGKELFAQSIHN----- 370 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 H R K PFVAVNC AI E+LLE+ELFGY GAFTG+++GG+ G FE+AH GTLFLD Sbjct: 371 HSMR---KDGPFVAVNCAAIPENLLESELFGYTAGAFTGAQKGGKPGYFELAHNGTLFLD 427 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EIGE+PL Q +LLR ++E+E+ R+G + + V++R+I+AT+ NLE+ +++G FR DLFY Sbjct: 428 EIGEIPLKFQAKLLRAIQEREIMRLGSDRTISVNIRIIAATNRNLEQLVREGEFREDLFY 487 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET---VLLHYD 443 RL +LR+++P L R DI LA +L AP G + S+ +L + Sbjct: 488 RLDVLRIEIPFLENRREDIPLLARGWL-----LKHAP-------GTELSDDACRLLSQAE 535 Query: 444 WPGNIRELRNMMERLALFLS-----------VEPTPDLTPQFMQLLLPELAR-------E 485 W GNIR+L N+ ERL++ S V PT P L LP Sbjct: 536 WNGNIRQLFNICERLSVLCSGSLIAGKDVRNVLPTLPQEPGSPALPLPAEPSLPPAAPFR 595 Query: 486 SAKTPAPR---LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 SA+ +P+ T +ALE ++ AA LGISR+T WR++K Sbjct: 596 SAEEDSPKDSERETILKALEICRYSRSRAAALLGISRSTLWRKMK 640 >UniRef50_Q7MKR6 Sigma-54 dependent response regulator n=66 Tax=Gammaproteobacteria RepID=Q7MKR6_VIBVY Length = 501 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 203/340 (59%), Gaps = 39/340 (11%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 R + +M+G S + Q++ I +A S A VLIEGE+GTGKEL A+ +H R Sbjct: 166 RNHISEMVGNSDKTRQLKHMITQFAPSKACVLIEGESGTGKELVARGVHLA-----SGRT 220 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 G PFV +NCGAIA LLE+ELFG+ GAFTG+++ R GLF +A GGTLFLDEIGEM Sbjct: 221 G----PFVPLNCGAIAPELLESELFGHTSGAFTGAKKA-REGLFRVAIGGTLFLDEIGEM 275 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q+ LLRVLE++ + VG + +PVDVRV++AT+ +L++++++GRFR+DL+YRL++L Sbjct: 276 PLAMQSSLLRVLEQRSIRPVGSEKEIPVDVRVVAATNRDLQQEVEKGRFRKDLYYRLNVL 335 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 ++++PPLRER AD+ L F K LS + + Q + Y WPGN+REL Sbjct: 336 KIEVPPLRERKADLQELVPFFTK----QLSGELAMSAPQWAHEDIEAMHDYSWPGNVREL 391 Query: 452 RNMMERLALFLSVEPTPDLTPQFMQLLLPELA---RESAKTPA-------------PRLL 495 RN++ER + L P + LP ++ SA+ P P Sbjct: 392 RNLIER-CILLGKPPAHYWRELNGSMNLPNVSITVSHSAEVPTFKEGKKEFIGVGYPNDW 450 Query: 496 T--------PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 T QQ + ++G+K+AA+ LG++R T R+ K Sbjct: 451 TLKEVEKAHIQQVVHYYDGNKSAASRDLGVARKTLERKYK 490 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 137/330 (41%), Positives = 196/330 (59%), Gaps = 38/330 (11%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M G+SP +++ Q + VLI GE+G GKE+ A+AIH +A + + P Sbjct: 237 MNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIH-------EASETANA-P 288 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+++NCGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q Sbjct: 289 FISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQV 348 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ L +PP Sbjct: 349 KLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPP 408 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI+ L +FL S ++ +R + LLHY+WPGNIRELRN++ER Sbjct: 409 LRERREDIIELTYTFLN----DFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVER 464 Query: 458 LALF-----LSVEPTPDLTPQFMQ---------------LLLPELARESAKTPAPRLLTP 497 L +F + E P T ++ L L E E K R Sbjct: 465 LVVFATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIER---- 520 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL +G+K A LG++R T + RLK Sbjct: 521 --ALRILDGNKLECAKQLGVTRATLYNRLK 548 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 130/322 (40%), Positives = 202/322 (62%), Gaps = 29/322 (9%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G S +++ + +L A+S++ VL+ GE+GTGK L A+AIH F+ + +K P Sbjct: 430 IIGDSKKVKTAKNFVLKAAQSASTVLLLGESGTGKGLFARAIH---FSGN-----RKDGP 481 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+ VNC AI E+LLE+ELFGYEEG+FTG+++GG+ G FE+A+GGT+FLDEIG+MP +Q Sbjct: 482 FIKVNCSAIPETLLESELFGYEEGSFTGAQKGGKIGKFELANGGTIFLDEIGDMPFNMQA 541 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 ++LRVL+E+E+ R+GGH +P+DVRVI+AT+ +L E+++ RFR DL+YRL +L + +PP Sbjct: 542 KMLRVLQEREIERIGGHHSIPIDVRVIAATNRDLREEIKANRFREDLYYRLDVLSISIPP 601 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRE +DI L +S ++ P + + V Y WPGN+REL NM+ER Sbjct: 602 LREMASDIPVLTQSLIERICKKHHVPPKKVSEEVM----GVFCRYPWPGNVRELENMLER 657 Query: 458 L-----ALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------QALEKFN 505 L ++++ P Q +Q +R A + +T + AL+ Sbjct: 658 LLNLVEEDIINIDHLPAHLWQHIQ-----SSRYLASGHSLDNMTSEVERDAIINALKATK 712 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 +++ AA LG+ R+TF+ +LK Sbjct: 713 NNRSKAAKLLGLHRSTFYEKLK 734 >UniRef50_B1YLR1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Exiguobacterium RepID=B1YLR1_EXIS2 Length = 551 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 144/362 (39%), Positives = 205/362 (56%), Gaps = 31/362 (8%) Query: 182 VRQAFSDALDMTRMSLRHNTHDATRNALRT---RYVLGDMLGQSPQMEQVRQTILLYARS 238 VR + D++ M A + +RT +Y D++ +S M V L A Sbjct: 199 VRGSVGVIRDISEMKALTKELKAAKQKIRTLEAKYTFDDIIAESESMRFVVDQAKLAATM 258 Query: 239 SAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 298 VLI GE+GTGKEL A AIH A ++ FV VNC AIA SLLE+ELFGY Sbjct: 259 PVNVLIRGESGTGKELFAHAIH--------AASDRRYEQFVRVNCAAIAPSLLESELFGY 310 Query: 299 EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVP 358 EEGAF+G+RRGG+ G FE AHGG+LFLDEIGE+PL +Q +LLRVL+E EV RVGG + VP Sbjct: 311 EEGAFSGARRGGKRGYFEEAHGGSLFLDEIGELPLDVQAKLLRVLQENEVVRVGGAKAVP 370 Query: 359 VDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA 418 VDVR+I+AT+ NLE+ + G FR DL+YR++ L + +P LRER D+ PL+ L+ Sbjct: 371 VDVRIIAATNANLEQKIITGEFREDLYYRINRLPIHIPALRERPDDLAPLSTHLLR---- 426 Query: 419 ALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS-------------VE 465 L+ + ++ + + + + W GN+REL N++ R +F V Sbjct: 427 KLNQSYGRSVERVSEDALEAIRQQTWKGNVRELENVIGRALIFTDKTEQVLRKGHLQLVS 486 Query: 466 PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 PTP + + + L+ E + + ++AL+ NG+KT AA LGIS + + Sbjct: 487 PTPSKRSERPKKEIKHLSDEMSYVEEQLI---REALDVVNGNKTEAAKQLGISLRALYYK 543 Query: 526 LK 527 ++ Sbjct: 544 VE 545 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 136/332 (40%), Positives = 201/332 (60%), Gaps = 34/332 (10%) Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 V ++G+ P ++++ + I A+S + VL+ GE+GTGKEL A +IH + Sbjct: 247 VFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHE--------LSSR 298 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 S PFVA+NC AI E+LLE+ELFGYEEG+FTG+R+GG+ G E+A+ GTLFLDEIG+MPL Sbjct: 299 NSGPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPL 358 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 LQ +LLRV++EK + VG P+P++VR+I+ATH NLEE + G FR DLF+RL+++ + Sbjct: 359 TLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPI 418 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 +PPLR+R D L +L+ L PF LQ L+ Y WPGNIREL N Sbjct: 419 FIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQ----LVKYHWPGNIRELEN 474 Query: 454 MMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ--------------Q 499 ++E L +++ ++P+ + + + + +E + + + PQ Q Sbjct: 475 LVEYL---VNIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQ 531 Query: 500 ALEKF----NGDKTAAANYLGISRTTFWRRLK 527 L +F +G K AAA LG+S T +RR+K Sbjct: 532 MLNRFGWHTDGKKKAAAA-LGVSLATLYRRIK 562 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 147/345 (42%), Positives = 210/345 (60%), Gaps = 39/345 (11%) Query: 202 HDAT-----RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 HD T + L+ RY G ++GQS +M ++ + + A+S + VLIEGE+GTGKEL A Sbjct: 147 HDVTQLAELKKELKGRYAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIA 206 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 AIH E R D PF+ VNC A++E +LE+ELFG+ GAFTG+ + G FE Sbjct: 207 HAIH-ENSPRKDG-------PFIKVNCAALSEGVLESELFGHVRGAFTGAV-SSKPGRFE 257 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGTLFLDEIGE+ +Q +LLRVL+E+E RVGG + + VDVRVI+AT+ +L+ + Sbjct: 258 LASGGTLFLDEIGEISASMQVKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAID 317 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FRRDL+YRL ++ L LPPLRER DI L SF L+ +A F + Q ++ Sbjct: 318 AGTFRRDLYYRLRVVPLFLPPLRERREDIPLLISSF----LSRYNAEFGKNVVGLSQEAQ 373 Query: 437 TVLLHYDWPGNIRELRNMMERLALF-----LSVEPTP-DLTPQFMQLLLPE--------L 482 +L+++ +PGNIREL+N++E L + V P DL P +PE L Sbjct: 374 NILMNHSYPGNIRELQNIIEHAVLLSTGRTIGVRELPRDLAP------IPEESSFADVAL 427 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +R +A ++ ++A+EK G+ + AA LGI R+T WR+L+ Sbjct: 428 SRSNALRTMEDVMI-RKAVEKTQGNMSQAAKLLGIGRSTLWRKLR 471 >UniRef50_B2A7R2 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7R2_NATTJ Length = 674 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/263 (47%), Positives = 175/263 (66%), Gaps = 23/263 (8%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 RY ++G+S ++ + +Q + AR VLI G+TGTGKEL AQ+IH Y AR D Sbjct: 335 RYTFDSIVGKSTELIKCKQKGMKIARLDKPVLIIGQTGTGKELFAQSIHN-YSARKD--- 390 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 +PFVAVNC A+ LLE+ELFGYEEGAFTG+++GG+ GLFE+AHGGTLFLDEIG++ Sbjct: 391 ----NPFVAVNCAALHSELLESELFGYEEGAFTGAKKGGKEGLFELAHGGTLFLDEIGDI 446 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 LQ +LLRVL+EKE+ R+GG + PVDVR+I+AT+ + ++ M+QG+ R+DL+YRLS+L Sbjct: 447 SSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIAATNKDFKKLMRQGKLRKDLYYRLSVL 506 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS-ETVLLHYDWPGNIRE 450 L+LP L + DI L E FL+ +R+ ++ L+++DW GNIRE Sbjct: 507 NLKLPSLNDLQEDIPLLVEFFLQ----------KTGVRKSMEKEVMDKLVNHDWDGNIRE 556 Query: 451 LRNMMERLALF----LSVEPTPD 469 L N +E LA + +E PD Sbjct: 557 LENCVEYLAYMSDDSIKLEDLPD 579 >UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearothermophilus RepID=LIHY_BACST Length = 543 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 137/324 (42%), Positives = 203/324 (62%), Gaps = 26/324 (8%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y G ++ +P E+ +T + ++S A VLI GETG+GKE+ A+ IH + Sbjct: 227 YRFGRVVTYNPSFEKELRTASIASQSDANVLILGETGSGKEVLARTIHEQ--------SP 278 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 +++ PFVA+N GAI L+ +ELFGY EGAFTG+R+GGR G FE+A GGTLFLDEIG+MP Sbjct: 279 RRNGPFVALNAGAIPRELIASELFGYVEGAFTGARKGGRPGKFEVADGGTLFLDEIGDMP 338 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM-QQGRFRRDLFYRLSIL 391 L LQ LLRVLEE++V R+G H+ P++VRVI+AT+ NL+E++ +G FR DL+YRL++ Sbjct: 339 LELQVNLLRVLEERKVIRIGDHKERPINVRVIAATNRNLKEEIAYRGSFRSDLYYRLNVF 398 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +PPLR+R DI L+ FLK + L ++ +L Y+WPGNIREL Sbjct: 399 TIHIPPLRDRKEDIETLSLQFLKNFHQHYCGKGTCHLS---NSALQLLQSYNWPGNIREL 455 Query: 452 RNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDK--- 508 RN++ER A L+++ P+ + + LPE + + P + + +EK ++ Sbjct: 456 RNVIER-AFLLAID-----EPEILPIHLPEEIQNANCAIPPSSVNNLKDVEKKMIEQALK 509 Query: 509 -----TAAANYLGISRTTFWRRLK 527 T AA LGI+R+T +R++K Sbjct: 510 ESKSLTEAAKKLGITRSTLYRKIK 533 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 14/320 (4%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 T Y +G ++ + ++ ++ +L RS++ VLI GE+GTGKEL A +IH Sbjct: 370 TSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNA-------- 421 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++ PF+ VNC AI L EAELFGYE+GAFTG+R+ G+ G FE+A GT+FLDEIG+ Sbjct: 422 SNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDEIGD 481 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPL LQ++LLRV+++KE+ RVGG + VDVR+I+AT+ +L+ + +G FR DL++R+++ Sbjct: 482 MPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFRINV 541 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + L++PPLR+R DI LA++F++ L L+A L YDWPGNIRE Sbjct: 542 VELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAALEA----LTRYDWPGNIRE 597 Query: 451 LRNMMERLALF--LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDK 508 L N++ER+ + + DL + + A+ + + T Q AL + G+K Sbjct: 598 LENIIERMLNYRESGLIELQDLPEEIVGRPGGMAAKATQTLAVMEMETIQAALAEAGGNK 657 Query: 509 TAAANYLGISRTTFWRRLKS 528 + AA LGISR+ + +L S Sbjct: 658 SKAARLLGISRSKLYEKLGS 677 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 134/322 (41%), Positives = 202/322 (62%), Gaps = 19/322 (5%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 R+ L ++LG SP + +V++ + A++ + +L+ GETGTGKEL A A+H Sbjct: 142 RFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFAHALH--------LSS 193 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 ++ + VNC AI + LLE+ELFGYEEGAFTG+R+GG+ G FE+A+ GTLFLDEIGEM Sbjct: 194 KRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLFLDEIGEM 253 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 P LQ +LLRVL++ E+ R+GG +P+ VDVR+++AT+ NL E ++ +FR DL+YRL+++ Sbjct: 254 PARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDLYYRLNVI 313 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 L +PPLRER+ DI L F++ L+ ++ E V Y WPGN+REL Sbjct: 314 ELHIPPLRERMEDIPCLVVHFIR----ELNHRLGVKVKGITPEVEEVFQSYHWPGNVREL 369 Query: 452 RNMMERLALFL--SVEPTPDLTPQFMQLLLPELARESAKTPAP-RLLTPQ---QALEKFN 505 N++ER + V D+ F+ +L R+++++ R L + + LE N Sbjct: 370 YNVLERTMNVIQRDVIGLADIN-WFLPRVLSSSGRQTSRSSNTLRNLEAKIIHRVLESCN 428 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G+K+ AA LGI R+T + +LK Sbjct: 429 GNKSRAAEILGIHRSTIYNKLK 450 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/341 (41%), Positives = 207/341 (60%), Gaps = 36/341 (10%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 +D T + ++ D++G+S +V+ A+SS+ VLI+GE+GTGKEL A+AIH Sbjct: 265 NDMTTGTMIMKF--DDIIGESQLFNEVKIQGEKAAQSSSTVLIQGESGTGKELFARAIHF 322 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 H R K PF+ +NC AI E LLE+ELFGYEEGAFTG++RGG++G FE+A+GG Sbjct: 323 -----HSQRCKK---PFIPINCAAIPEQLLESELFGYEEGAFTGAKRGGKSGKFELANGG 374 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEIG+MPL LQT+LLRVL+E+ + +VGG +P+D R+I+AT+ +LE + +G FR Sbjct: 375 TIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATNKDLENRVLEGEFR 434 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DLFYR++++ L +PPLR+R D++ L S+L L + +++ V + Sbjct: 435 QDLFYRINVIPLHIPPLRQRGEDLMILV-SYL---LNKCNEKLGKYIQEVHPGVFDVFMS 490 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE-LARE--SAKTPAPRLLTPQ 498 Y WPGN+REL N +E S M+ LP+ L+R +K + R +T Sbjct: 491 YQWPGNVRELENTIEYAVNMCS-------GSIIMERDLPKRLSRRQTESKDESFRGITSI 543 Query: 499 QALEK---------FNGDK---TAAANYLGISRTTFWRRLK 527 Q LE+ F K T AA LGI R T +R+LK Sbjct: 544 QELERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLK 584 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/333 (41%), Positives = 204/333 (61%), Gaps = 30/333 (9%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 +R +Y L ++G S M +V + +R+ + VLI GE+GTGKEL A+AIH + Sbjct: 137 VREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKELIARAIHY-----NG 191 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 R G +PFV +NCGA+ E+L E+ELFG+ +G+FTG+ + + GLF AH GT+FLDEI Sbjct: 192 PRSG---YPFVVINCGALPENLQESELFGHAKGSFTGAVKE-KVGLFHHAHKGTIFLDEI 247 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 GE Q +LLR L++ E+ +VGG++ + VDVR+I+AT+ NLE + QGRFR+DLFYR+ Sbjct: 248 GETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKDLFYRI 307 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAP---FSAALRQGLQASETVLLHYDWP 445 +++R+ LP L+ER DI L FL++ L FS ++ VLL+YDWP Sbjct: 308 NVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSG-------SAMAVLLNYDWP 360 Query: 446 GNIRELRNMMER-LAL----FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-- 498 GNIREL+N++ER +AL + VE P T F+ + K+ L+ Q Sbjct: 361 GNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEK 420 Query: 499 ----QALEKFNGDKTAAANYLGISRTTFWRRLK 527 +A+ K+ G++T + LGIS TT WR++K Sbjct: 421 NAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIK 453 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/360 (39%), Positives = 210/360 (58%), Gaps = 24/360 (6%) Query: 179 AATVRQAFSDALDMTR-----MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTIL 233 A V Q F+D +++ ++ N D ++Y D++G SP++ + Sbjct: 213 AVCVFQHFTDIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAE 272 Query: 234 LYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA 293 A+S++ VLI GE+GTGKEL A AIH A ++ +PF+ VNC AI ++LLE+ Sbjct: 273 KSAQSNSTVLILGESGTGKELLAHAIH--------AASMRRENPFIKVNCAAIPDTLLES 324 Query: 294 ELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGG 353 E FGY +GAFTG+ + + G FE+AHGGT+FLDEIG+M L LQ +LLRVL+E E RVGG Sbjct: 325 EFFGYAKGAFTGAVKS-KIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGG 383 Query: 354 HQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL 413 +Q + VDVRVI+AT+ NL E ++QGRFR DL+YRL+++ + +PPLR R D LP S L Sbjct: 384 NQTIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKED-LPALVSHL 442 Query: 414 KVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP-TPDLTP 472 + +L+ ++ + +E VL YDWPGN+REL N++ER+ + E T Sbjct: 443 ---ITSLNRKLGKNVKGISKDAEEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFI 499 Query: 473 QFMQLLLPELARESAKTPAPRL--LTPQQALEKFNGD---KTAAANYLGISRTTFWRRLK 527 Q + R+ P ++ + ++A+ KF K AA L IS T + +LK Sbjct: 500 QHVNQFRMSSERDVDLMPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLK 559 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/348 (42%), Positives = 208/348 (59%), Gaps = 38/348 (10%) Query: 195 MSLRHNTHDATRNALRTRYVLG-------DML-GQSPQMEQVRQTILLYARSSAAVLIEG 246 +SLR N R TR V+G DM+ G +P+++Q Q +R+ + VL+ G Sbjct: 315 LSLRENQ----RIRAITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDSTVLLTG 370 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 E+GTGKEL AQAIH + +A F+A+NCGA+ L+++ELFGY +GAFTGS Sbjct: 371 ESGTGKELFAQAIHNASPRQQEA--------FIALNCGALPRDLVQSELFGYVDGAFTGS 422 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 RRGG G FE+A GGTLFLDEIGEMPL QT LLRVL+E EV R+G P+ V+VR+I+A Sbjct: 423 RRGGSPGKFELADGGTLFLDEIGEMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAA 482 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 THCNL + +++G FRRDL+YRL+++ L +PPLRER DI L +F + AL A Sbjct: 483 THCNLLDAVEKGAFRRDLYYRLNVVSLAIPPLRERQEDIPGLVNTF----ILALCARLKR 538 Query: 427 ALRQGLQASETVLLHYDWPGNIRELRNMMERL-----ALFLSVEPTPDLTPQFMQ--LLL 479 Q + L + WPGN+REL N++ER+ L + + PD Q Q + L Sbjct: 539 IAPQVSPEAMRCLQAWHWPGNVRELENLVERMVNLCEGLEIDRQDLPDDMVQRQQPPVQL 598 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P L +E+ + +++ Q +G+ +A LGISRT + +L Sbjct: 599 PSL-QENERQHVLQVVAEQ------HGNLRQSAQLLGISRTALYNKLN 639 >UniRef50_C5EGH7 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EGH7_9FIRM Length = 698 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/249 (49%), Positives = 168/249 (67%), Gaps = 17/249 (6%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 R RY D++G S + + ARS AAV+I GE+GTGKE+ AQ IH E Sbjct: 323 RARYTFEDIIGTSRAIREAVNNGRQMARSDAAVMITGESGTGKEMFAQGIHNE------- 375 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 +K++ FVAVNC AI +SLLE+E+FGYEEG+FTG+++GG+ G FE+AH GT+FLDEIG Sbjct: 376 -SARKNYNFVAVNCAAIPDSLLESEMFGYEEGSFTGAKKGGKMGYFELAHRGTIFLDEIG 434 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 EMP+ LQ++LLRVLEE++V R+G + + VDVRVI+AT+ +L ++ G FR DLFYRL+ Sbjct: 435 EMPMSLQSKLLRVLEERKVDRIGSDKSIDVDVRVIAATNKDLFTMVENGGFREDLFYRLN 494 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 +L L +PPLRER DILP+ F + + ++ A E +L Y W GN+R Sbjct: 495 VLPLNVPPLRERTQDILPIFYFFAGRNRSDMALTPEA---------EAILTGYPWRGNVR 545 Query: 450 ELRNMMERL 458 ELRN++E L Sbjct: 546 ELRNVVEFL 554 >UniRef50_A3EU11 Putative sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3EU11_9BACT Length = 463 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 141/320 (44%), Positives = 195/320 (60%), Gaps = 28/320 (8%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 DM+G SP M + ++I A + A VLI GE+GTGKEL A+AIH R + S Sbjct: 158 DMVGSSPSMMECFRSIRKIAGTDACVLITGESGTGKELVARAIHE--------RSKRSSG 209 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PF+ +NCGAI +L+++ELFGYE+GAFTG+ + G E A+ GT+ LDEIG+MP LQ Sbjct: 210 PFITLNCGAIPSNLIQSELFGYEKGAFTGAH-SRKIGHIEAANHGTIMLDEIGDMPFELQ 268 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 LLRVL+ ++ RVG +PVDVR+I+ATH +LE+ ++GRFR DL+YRL +LR+ LP Sbjct: 269 VNLLRVLQFGKIQRVGSSAEIPVDVRIIAATHIDLEKACREGRFREDLYYRLHVLRVSLP 328 Query: 397 PLRERVADILPLAESFLK---VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 PLR+R ADI LA F K A S PFSA + +QA Y WPGN+REL N Sbjct: 329 PLRDRGADISLLARYFCKRFSAEYGATSKPFSAEALEVIQA-------YSWPGNVRELIN 381 Query: 454 MMERLALFLSVEPTPDLTPQFMQLL-LPELARESAKT-----PAPRLLTPQQALEKFNGD 507 ++ L + P + P+ +QL +P A++S KT T ++ L+KF + Sbjct: 382 KIKSAVL---MSEGPLIEPRDLQLENMPHPAKKSGKTLREIREITERETLRETLQKFENN 438 Query: 508 KTAAANYLGISRTTFWRRLK 527 + A LG++RTT + LK Sbjct: 439 VSRTARELGVTRTTLYDLLK 458 >UniRef50_Q1JW16 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JW16_DESAC Length = 459 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 147/339 (43%), Positives = 205/339 (60%), Gaps = 42/339 (12%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++G+S M++V + I LYA S AAV+I GETGTGKEL A+AIH E ++ Sbjct: 125 NLVGRSVAMQEVFRKIRLYAASDAAVVITGETGTGKELVARAIHEE--------SERRLG 176 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 P++A+NC AI+E LLE+ELFG+E+GAFTG+ R R G FE A+GG+LFLDEIG+MPL Q Sbjct: 177 PYIALNCSAISEDLLESELFGHEKGAFTGAIRSHR-GRFERANGGSLFLDEIGDMPLHTQ 235 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 TRLLRVLEE++V VG + +P+DVR+I AT+ LE+ + Q RFR DL++R+S+LR+ LP Sbjct: 236 TRLLRVLEERQVEPVGSERVLPIDVRIICATNVGLEKAVGQNRFRSDLYHRISVLRIHLP 295 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER DI L + FL+ S + ++ + + +L Y WPGNIRELRN+ME Sbjct: 296 PLRERRDDIPLLVKRFLR----RFSDSYGRSVERLTPEAMELLQSYLWPGNIRELRNVME 351 Query: 457 RL-----ALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP-------------- 497 R+ A + + + Q + ES P L+TP Sbjct: 352 RVFVENHAPVIGARAFSEWVRE-RQNFVQNRWEESPPREEPALITPYDPAPRPATMTLKP 410 Query: 498 ---------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++A E+ +G+ +AAA LGI R T +R LK Sbjct: 411 AEELTEQAIRRAYEECDGNISAAARRLGIHRATLYRHLK 449 >UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QTT1_9BACI Length = 614 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 143/351 (40%), Positives = 208/351 (59%), Gaps = 32/351 (9%) Query: 188 DALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGE 247 D + M + HD N + T + ++G+S V ++ A++ A V I GE Sbjct: 282 DMIGYRVMLQKTENHDF--NFISTTFHFAGVIGKSAAFANVIKSCEKVAKTDATVHITGE 339 Query: 248 TGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSR 307 TGTGKEL A+AIH+ ++R +K+ PFVA+NCGAI + L+ +ELFGYEEGAFTG++ Sbjct: 340 TGTGKELIARAIHQ------NSR--RKNRPFVAINCGAIPKELIGSELFGYEEGAFTGAK 391 Query: 308 RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 367 R G G F A+GGT+FLDEIGE+P +Q LLRVL+E+EV +GG +P+PVD+RVI+AT Sbjct: 392 RTGHKGKFVQANGGTIFLDEIGEIPPEMQIALLRVLQEREVVPIGGTKPIPVDIRVITAT 451 Query: 368 HCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAA 427 HC+L + +++G+ R DLFYR+ + +++P LRER DI L + + + + +S FS Sbjct: 452 HCDLYQLVREGKLREDLFYRIYVYPIKVPALRERKEDIPFLIQYYCQKNNWPVS--FSNE 509 Query: 428 LRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS--VEPTPDLTPQFMQLLLPELARE 485 + Q + + Y WPGNIREL N++ER+ + + P+L F+ E E Sbjct: 510 VIQ-------LFMTYHWPGNIRELFNVLERIRIEYGDHIPSIPELKSMFIGW---ENQGE 559 Query: 486 SAKTPAPRLLTPQQ--------ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 K+ L +Q LEK GD AA L I R+TF+R+LK Sbjct: 560 HRKSEQKTLSYREQIEKNHMMEMLEKTKGDIARAAAELNIPRSTFYRKLKK 610 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 218/366 (59%), Gaps = 46/366 (12%) Query: 186 FSDALDMTRMSL-------RHNTHDATRNALR-TRYVLGDMLGQSPQMEQVRQTILLYAR 237 F D D++R++ + ++A LR TRY L ++G S ++++++ L A Sbjct: 114 FKDVKDLSRLASELKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAA 173 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 + VLI GE+GTGKEL AQAIH +K PFV +NC AI + LLEAELFG Sbjct: 174 THYPVLICGESGTGKELFAQAIHHA--------SNRKLFPFVRINCAAIPKDLLEAELFG 225 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE+GAFTG+R G+ G FE+AH GTLFLDE+G++PL +Q +LLR LE++E RVGG++ + Sbjct: 226 YEKGAFTGARSDGKPGKFELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKII 285 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 D+R+I+AT+ +L++ M GRFR+DLFYRL+++ + +PPLR+R DI+P AE L+ L Sbjct: 286 RSDLRIIAATNQDLDQMMADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILR-QL 344 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER--------------LALFLS 463 AA + ++ + QA+ L ++ WPGN+REL N++ER L +L Sbjct: 345 AAEANLPDISMDKSAQAA---LRNHQWPGNVRELSNVLERTLSALNGRTIGLSDLPFYLH 401 Query: 464 VE--PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTT 521 + P + ++ + + RES + ALE+ +K AA LGI RT Sbjct: 402 QDRKPLSNGGSSSLKAVQARIERESICS----------ALEQTGYNKVKAAELLGIHRTL 451 Query: 522 FWRRLK 527 ++++K Sbjct: 452 LYKKIK 457 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 141/336 (41%), Positives = 200/336 (59%), Gaps = 31/336 (9%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + R LR RY LG+M+G+S M+++ I A+ A VL+ GETGTGKEL A+ IH Sbjct: 129 NQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGIH- 187 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 Y + + + PFV ++C A+ E+LLE+ELFG+ GAFTG+ + G E+AHGG Sbjct: 188 -YAGQEE------NLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQ-KKGQIELAHGG 239 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIGE+PL LQ + LR L+EKE+ R+G + VDVR+I+AT+ +LE ++ G++R Sbjct: 240 TLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWR 299 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLFYRL+++ +++PPLRER DI PL F LA +A A++ V + Sbjct: 300 EDLFYRLNVISIEIPPLRERRDDIPPLVNHF----LAKYNAQNGKAIQGMTGEVMEVFMA 355 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA---------- 491 YDWPGN+REL N++ER + + M L P+L SA P+ Sbjct: 356 YDWPGNVRELENVIERAVVLCMGDSIA------MSCLPPKLQERSAPAPSTDGVNLMEME 409 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 RL+ Q LEK +++AAA LGISR ++K Sbjct: 410 KRLIV--QTLEKTEQNQSAAARELGISRKQLRTKMK 443 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 157/381 (41%), Positives = 221/381 (58%), Gaps = 41/381 (10%) Query: 170 GMTGIFIYSAAT-VRQAFSDALDMTRMSLRH--NTHDATRNALRTRYVLG--DMLGQSPQ 224 G G+ I+ + V F +++R + R N +A++ +G ++G+ P Sbjct: 205 GAVGMLIFQGVSEVYAIFQRLQELSREASRKEKNEAEASKQEAVASAAVGVERIIGRHPT 264 Query: 225 MEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 284 + V+Q I AR + VLI GE+GTGKE+ A+AIH E A D PFV+VNC Sbjct: 265 IAAVKQMIRRAARVPSTVLITGESGTGKEVVARAIH-EAGAHADG-------PFVSVNCA 316 Query: 285 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 344 AI E+LLEAELFGYE+GAFTG+++GG+ G F++AHGGTLFLDEIG+MPL +Q ++LRVLE Sbjct: 317 AIPEALLEAELFGYEDGAFTGAKKGGKPGKFQLAHGGTLFLDEIGDMPLAMQAKILRVLE 376 Query: 345 EKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVAD 404 EK+V +VGG VDVR+I+AT+ LEE ++ G FR DLFYRL+I+R+ LPPLRER D Sbjct: 377 EKKVEKVGGLSETEVDVRIIAATNKPLEEMVRDGTFREDLFYRLNIIRIHLPPLRERKTD 436 Query: 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV 464 I L L + L F + + + VL++Y WPGNIREL N++E L + Sbjct: 437 IPAL----LAHHMERLCRQFGVVSKSFAKEAMEVLINYSWPGNIRELVNVVEWLISMVEG 492 Query: 465 EPTP-DLTPQFMQLLLPELARESAKTPAP----------RLLTPQQALEKF-------NG 506 E + P ++ + P + TP P + + Q E+ NG Sbjct: 493 ENIEREHLPAYLSTIHPSV------TPMPDGGANIADQWKEIVYQSERERIAAALVAANG 546 Query: 507 DKTAAANYLGISRTTFWRRLK 527 +K AA LGI R+T + +LK Sbjct: 547 NKAEAARRLGIHRSTLYEKLK 567 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 221/376 (58%), Gaps = 40/376 (10%) Query: 173 GIFIYSAATVRQAFSDALDM----TRMSLRHNTHDATRNAL----RTRYVLGDMLGQSPQ 224 G I +A TV F D ++ RM + +T D R + R +Y ++ Q+ Q Sbjct: 110 GRVIGAAGTV--LFKDVKELESLVKRMKVLESTVDEYRGEIKRLHRAKYSFEHIVTQNRQ 167 Query: 225 MEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 284 M +++ A S++ VLI+GE+GTGKE A AIHR R+ + F+ +NC Sbjct: 168 MIYLKELARKAAESNSTVLIQGESGTGKEFFAHAIHRASLRRYGS--------FITINCA 219 Query: 285 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 344 AI LLE+ELFGY+ GAFTG+++ G+ G FE+ +GGT+ LDEIG MPL +Q ++LR+LE Sbjct: 220 AIPNELLESELFGYDAGAFTGAKKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRILE 279 Query: 345 EKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVAD 404 +E R+GG+ + +DVR+I+AT+ LEE +++GRFR+DL+YRL+++ +++PPLRER+ D Sbjct: 280 SREFERIGGNDRIQLDVRIIAATNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIED 339 Query: 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV 464 I LA+ L+ L+ +++ + VL Y WPGN+RELRN +ER L++ Sbjct: 340 IPILAQRILE----KLAVDLGIEMKELTFETIEVLKKYQWPGNVRELRNTLERA---LNI 392 Query: 465 EPTPDLTPQFMQLLLPELARES------------AKTPAPRLLTPQQALEKFNGDKTAAA 512 + P+ + L E + +S AKT + Q AL NG+K+ AA Sbjct: 393 VQGDMIYPEDLPGHLIESSSKSSYSHSLLLKDIMAKTEIEAI---QSALRDSNGNKSVAA 449 Query: 513 NYLGISRTTFWRRLKS 528 LGI RT ++++++ Sbjct: 450 KQLGIHRTALYKKIQA 465 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 144/324 (44%), Positives = 197/324 (60%), Gaps = 29/324 (8%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH-REYFARHDARQGKKSH 276 ++G SP M++V +TI L A S A VLI GETGTGKEL A+ IH F+ QG Sbjct: 146 IIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHYNSTFS-----QG---- 196 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 P V VNC A+ E+LLE+ELFG+E+G+FTG+ R R G FE+AH GT+FLDEIGEM L Q Sbjct: 197 PLVKVNCAALPETLLESELFGHEKGSFTGADRQ-RKGRFELAHKGTIFLDEIGEMTLGTQ 255 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRVL+E+E RVGG + VD RVI+AT+ LEE++ G+FR DLFYRL+++ + LP Sbjct: 256 RKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLP 315 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER DI L + FL+ P ++ + ++ VL+ +DWPGN+REL N +E Sbjct: 316 PLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIK----VLMEHDWPGNVRELENTIE 371 Query: 457 RLALFLS--VEPTPDLTPQFMQL-------LLPELARESAKTPAPRLLTPQ---QALEKF 504 R + V T L F Q+ L + + + A R++ + +ALEK Sbjct: 372 RAVILAQGGVITTHHLV--FSQIRTGRNIDLSEVIDKTRSLDEAMRIIESKIILEALEKA 429 Query: 505 NGDKTAAANYLGISRTTFWRRLKS 528 GD AA L IS + R+L++ Sbjct: 430 KGDHALAAEILDISESELKRKLRT 453 >UniRef50_C6HUB1 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=C6HUB1_9BACT Length = 473 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 149/338 (44%), Positives = 198/338 (58%), Gaps = 37/338 (10%) Query: 212 RYVLGDMLGQSPQMEQVR-QTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 RY L M+ +SP +R Q L VL++GETGTGKE A+ +H ++ Sbjct: 137 RYSLDRMIAESPAGASLRDQVAGLVENDRVTVLLQGETGTGKEYVAKVLH------YNGP 190 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 G + PF+ V+C AI L E+ELFGYE+G+FTG+ G R GL E+A GGT+ LDEIG+ Sbjct: 191 SGDR--PFIEVDCPAIPSELFESELFGYEKGSFTGAT-GRRIGLVELAEGGTVLLDEIGD 247 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 +PLPLQ +LLRV+EE+ + RVGG P PV+VR ++ATH +L +++GRFR DLFYRL++ Sbjct: 248 LPLPLQAKLLRVIEERTIRRVGGGAPFPVNVRFMAATHRDLRVAVKEGRFREDLFYRLNV 307 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + L +PPLRERV DI+PLAE FL +S + F + + A++ +L Y +PGNIRE Sbjct: 308 VTLAIPPLRERVGDIVPLAERFLHLS----AQTFRKKILRLSPAAQKLLKGYSFPGNIRE 363 Query: 451 LRNMMERLALFLS---VEP------------------TPDLTPQFMQLLLPELARESAKT 489 L N++ER LF S +EP PD P LLLP E Sbjct: 364 LSNLVERAVLFCSGTQLEPGHFPSDLRSPAHEPLPVAIPD-DPDPRTLLLPFRMGEDTLD 422 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R L L + G+KT AA LGISR RRLK Sbjct: 423 GVERRLI-ADILARSGGNKTRAAQALGISRWALDRRLK 459 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 241 bits (614), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 144/339 (42%), Positives = 199/339 (58%), Gaps = 37/339 (10%) Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 + LR G+ +G+SP M +V I A + VL+ G +G+GKEL A A+HR Sbjct: 129 DRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGALHR----- 183 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 R ++ PF+ +NC A+ E LLE+ELFG+E+GAFTG+++ R G FE A GGTLF D Sbjct: 184 ---RSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQA-RIGKFEAADGGTLFFD 239 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 E+GEMPLPLQ +LLRVLE++EVT VGG+ P V+VR + AT NLEE + GRFR DL+Y Sbjct: 240 EVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYY 299 Query: 387 RLSILRLQLPPLRERVADILPLAESFLK--VSLAALSAPFSAALRQGLQASETVLLHYDW 444 R++++ + LPPLRER +D+ L E FL+ +L A S + + LL YD+ Sbjct: 300 RINVVPVTLPPLRERGSDVALLTERFLRRFCALHERQATLS-------EQARLALLAYDY 352 Query: 445 PGNIRELRNMMERLALFLS-----VEPTPDLTPQFMQLLLPELARESAKTPAP------- 492 PGN+RELRN +E L + V P+ Q + P ++ TPA Sbjct: 353 PGNVRELRNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVAR 412 Query: 493 ----RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R++ +ALE+ G K AA+ LGISR W +LK Sbjct: 413 FERRRIM---EALERTGGRKIQAADLLGISRKQLWLKLK 448 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 240 bits (613), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 147/359 (40%), Positives = 205/359 (57%), Gaps = 49/359 (13%) Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 +M R + N + R + +++ QS M QV I A + + VLI GE+GT Sbjct: 101 EMARYTTVFRQVSEVLNRIEARKLFPEIVAQSKAMRQVLSQIKRVAPTDSTVLITGESGT 160 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL A +IHR H R G++ FV +NC AI ++LLE+ELFGYE+GAFTG+ Sbjct: 161 GKELVADSIHR-----HSQRNGRR---FVKINCAAIPDTLLESELFGYEKGAFTGAA-AR 211 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 + G FE A+GGT+FLDEIG+MPL Q ++LRVLEEKEV R+GG +P+PVDVRV++AT+ N Sbjct: 212 KPGKFEQANGGTVFLDEIGDMPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRN 271 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL--AALSAPFSAAL 428 +++ + G FR DLF+RL++ +QLPPLRER DI L E F+K S + +S P Sbjct: 272 IQKMVADGAFREDLFFRLNVFPIQLPPLRERPEDIPFLIEEFMKFSSKESTISPP----- 326 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESA- 487 + +L + WPGN+RELRN +E LF P+ P P LA A Sbjct: 327 ------AMHILCAHQWPGNVRELRNAVESSLLFGKEVVEPEHLP-------PALAGSMAV 373 Query: 488 KTPAPRLLTPQ-------------------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 TPA L++ + +AL++ +G + AA LGI + W R+K Sbjct: 374 PTPAGVLISGEDESLDLDFRLQELEKGILVEALKRSDGVQAQAARLLGIKERSLWHRVK 432 >UniRef50_C5BFS1 Propionate catabolism operon regulatory protein n=3 Tax=Edwardsiella RepID=C5BFS1_EDWI9 Length = 649 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 177/286 (61%), Gaps = 23/286 (8%) Query: 197 LRHNTH-----DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 +RH H + R RY D+ P+M+ ++ YA + A VLI+GE+GTG Sbjct: 297 IRHAEHRLRQQEGRRQGFVARYDFDDIHTADPKMQDIKTLARHYAATQANVLIQGESGTG 356 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KEL AQ++HR ++S PFVA+NC AI E+LLE+ELFGY +GAFTG+ R G+ Sbjct: 357 KELFAQSLHRS--------SARRSQPFVAINCAAIPENLLESELFGYVDGAFTGANRRGK 408 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 AGLFE+AHGGTLFLDEIGE+PL +QT+LLR L+EKE+ R+GG +PVDVR+I+AT+ +L Sbjct: 409 AGLFELAHGGTLFLDEIGELPLSMQTKLLRALQEKEIMRIGGSGVLPVDVRIITATNQDL 468 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 + + FR DL+YRL+ L + LPPLR R DI L FL+ L A L Sbjct: 469 RRRIDERLFRGDLYYRLNTLHILLPPLRSRDDDIRLLGRHFLQTLGCCLDGEQEAVLL-- 526 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTP-QFMQ 476 L + + GN+RELR ++ER A+ V P LTP Q +Q Sbjct: 527 -----AALCRHPFHGNVRELRAIIERFAILYRVFPA--LTPTQILQ 565 >UniRef50_C0ZAD0 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAD0_BREBN Length = 691 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 133/286 (46%), Positives = 176/286 (61%), Gaps = 21/286 (7%) Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 L +Y D G+S +++V Q ARS++ VL+ GETGTGKEL AQAIH Sbjct: 326 KGLIAKYQFDDFYGESAPVQKVIQIARKIARSNSTVLLLGETGTGKELLAQAIHNA---- 381 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 ++ PFV VN AI+ESLLE+ELFGYEEGAFTG+R+GG G FE+AH GT+FLD Sbjct: 382 ----SPRRREPFVGVNFAAISESLLESELFGYEEGAFTGARKGGHIGWFELAHKGTIFLD 437 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EIG+ +Q RLLRVL+E+++ RVGG + +P D+RVI+AT+ +L+ + +G FR DL+Y Sbjct: 438 EIGDASTAIQNRLLRVLQERQIMRVGGSKIIPTDIRVIAATNQDLQRMIAEGAFRADLYY 497 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 RL+IL + LPPLR R DI LA+ F+K L P + ++A L YDWPG Sbjct: 498 RLNILPIHLPPLRNRREDIPWLAQQFIKKYSYDLRRPPFTLTNEAMRA----LHEYDWPG 553 Query: 447 NIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAP 492 NIREL N++E LA + E P P RE + P P Sbjct: 554 NIRELENVIEYLAHVVEEEAYPYHLP---------FLREIPEAPLP 590 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 130/322 (40%), Positives = 202/322 (62%), Gaps = 20/322 (6%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +++V D++G+SP+M++ + +++++ +LI GE+GTGKE+ + AIH+ Sbjct: 389 SQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSI------ 442 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + + P++ VNC A+ E LLE+ELFGY+EGAFTG+R+GG+ G FE+A GT+FLDEIG+ Sbjct: 443 --RSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGD 500 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 M L +Q +LLRVL+E+E+ R+GG +P+ VDVR+I+AT+ +L + + + +FR DL+YRL++ Sbjct: 501 MSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNV 560 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ-ASETVLLHYDWPGNIR 449 L + LPPLRER DI +A ++ L QG++ S T L YDWPGNIR Sbjct: 561 LTIDLPPLRERKEDIGFIARGLIEKINKRLGTDI-----QGVRPESITHLCAYDWPGNIR 615 Query: 450 ELRNMMERLALFLS---VEPTPDLTPQFMQLLL--PELARESAKTPAPRLLTPQQALEKF 504 EL N++ER + + P P M+ + E E A A R + + L + Sbjct: 616 ELENILERAIVICDEAWILPKHLALPGVMETITLGAEQTLEYALQAAEREIL-DKTLRRV 674 Query: 505 NGDKTAAANYLGISRTTFWRRL 526 G+K AA LGI R+ +++L Sbjct: 675 QGNKVQAARILGIHRSVLYKKL 696 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 198/324 (61%), Gaps = 27/324 (8%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 + +LG SP ++ + A+++A+VL+ GETGTGKEL AQAIH + H Sbjct: 334 FTFDSILGDSPALKSALHLARISAKNTASVLLYGETGTGKELFAQAIHNA--SEH----- 386 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 K+ FVA+NCGAI + LLE+ELFGYEEGAFTG+++GGR G E+A+ GTLFLDEIG+MP Sbjct: 387 -KNGSFVAINCGAIPKELLESELFGYEEGAFTGAQKGGRPGKIELANNGTLFLDEIGDMP 445 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 +Q +LLRVL+ E+ RVGG + +PV++R+ISATH +L++ + +FR DL+YR+S LR Sbjct: 446 FEMQVKLLRVLQFGEIQRVGGLRTIPVNLRIISATHKDLKKMIDVQQFRADLYYRISTLR 505 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL--HYDWPGNIRE 450 + +PPLRER DIL L + F+ + R+ + S+T L Y WPGNIR+ Sbjct: 506 INIPPLRERQGDILKLVQYFIDRHIIKFDR------RKQVLPSQTRLAISKYSWPGNIRQ 559 Query: 451 LRNMMERLALFLSVEPTPDLTPQFMQL--LLPELARESAKTPAPRLLTP------QQALE 502 L + ER A++L+ + L P+ + L +E K + L + L Sbjct: 560 LESATER-AIYLAEDGV--LLPEHFAISDLFSNTNKEVVKVVGTQTLEEVESQIITETLA 616 Query: 503 KFNGDKTAAANYLGISRTTFWRRL 526 F+ + + A LGISR T +R++ Sbjct: 617 FFDNNISKTAQSLGISRPTLYRKI 640 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/336 (40%), Positives = 209/336 (62%), Gaps = 29/336 (8%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 R ++ R+ G M+G++P+ME++ + I A S+ VLI GE+GTGKE+ A+A+H Y Sbjct: 141 REQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARAVH--YTG 198 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 + K PF+ V+CG++ +L+E+ELFGY +GAFTG++ + GL +A GGT+FL Sbjct: 199 CY------KDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHS-KQGLLAMADGGTVFL 251 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGE+P+ LQ++LLR L+EKE+ VGG + VP++VR+++AT+ +LE+ +QQG FRRDL+ Sbjct: 252 DEIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLY 311 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 +RL++L L++PPLR+R DI L FL+ + A + R + ++L YDWP Sbjct: 312 FRLNVLTLRIPPLRDRKQDIPLLVGHFLERTERA-----TGFQRNISDEALKLMLTYDWP 366 Query: 446 GNIRELRNMMERLALFLSVEPT----------PDLTPQFMQLLLPELARESAKTPAPRLL 495 GN+REL + ++R A L+ PT + Q +L P+ P Sbjct: 367 GNVRELEHCLDR-ACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAE 425 Query: 496 TPQQ----ALEKFNGDKTAAANYLGISRTTFWRRLK 527 +Q A+E+ +GDK AA LGI +TT +R+LK Sbjct: 426 MEKQAILEAIERLHGDKLEAARLLGIGKTTLYRKLK 461 >UniRef50_Q1DD25 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DD25_MYXXD Length = 450 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/326 (45%), Positives = 198/326 (60%), Gaps = 35/326 (10%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 G ++G S M +RQ I S A+LI GETGTGKE A+A+H R+G+ Sbjct: 141 GHLVGDSAGMASLRQLIARVGPSDTAILITGETGTGKERVARALHL-----ASGRKGR-- 193 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTG--SRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 VAVNC AI +LLE+ELFG+E+GAF+G SRR GR E AHGGTLFLDE+G+MPL Sbjct: 194 --LVAVNCAAIPSTLLESELFGHEKGAFSGALSRRAGR---IEQAHGGTLFLDELGDMPL 248 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 LQ +LLRVLE KEV R+GG PVPVD RV++ATH +L +++GRFR+DL++RL+++ L Sbjct: 249 ELQAKLLRVLETKEVERLGGSLPVPVDARVVTATHQDLARAVKEGRFRQDLYFRLNVMPL 308 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 Q+PPLRER D+LPLA +F A P A +ET L Y WPGN+RELRN Sbjct: 309 QVPPLRERPEDLLPLARAF-AAEFAGPQVPLVLA-----PGAETSLRAYAWPGNVRELRN 362 Query: 454 MMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKF--------- 504 ++ERL L P L P+ + P+ A +A P+ + ++ +E F Sbjct: 363 LIERLNLLRGEGPL-TLGPELVS--APQ-ATAAASRPSLGQKSYREHVEDFERELIRAAL 418 Query: 505 -NGDKTA-AANYLGISRTTFWRRLKS 528 G+ A AA L + R +RR+K+ Sbjct: 419 QEGESIAGAARLLQVDRGNLYRRIKA 444 >UniRef50_UPI0001BC60A6 putative PAS/PAC sensor protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC60A6 Length = 504 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/319 (39%), Positives = 198/319 (62%), Gaps = 25/319 (7%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++ +S +M + I A + VLI GE+GTGKEL A I + F +K P Sbjct: 191 LIYKSEKMNSIFTLINTIAPTDVTVLITGESGTGKELVADEIFYKSF--------RKDKP 242 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+ VNC AI LLEAELFGYE GAFT S++ G+ G+FE+A+ GT+ LDEIG+MP+ LQT Sbjct: 243 FIKVNCAAIPSELLEAELFGYEGGAFTDSKKNGKIGMFELANEGTILLDEIGDMPIKLQT 302 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL++KE+ ++GG QP+ +++R+I++T+ NL+E ++ G+FR DLFYRL+++ + + P Sbjct: 303 KLLRVLQQKEIMKLGGTQPIKLNIRIIASTNQNLKEQIKNGKFREDLFYRLNVVPIDIEP 362 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR+R DI L FL + + ++ + +A E +L+ Y WPGNIREL N +ER Sbjct: 363 LRKRKEDIPELIFEFLNI----FNKKYNKNTKIDKEAIE-LLVKYKWPGNIRELENFLER 417 Query: 458 LALFLS--------VEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKT 509 + + + V P D FM++ +L +++ R+++ +AL+ F G Sbjct: 418 MVVINTTGIITVREVAPMIDSDDFFMEVSDYDL-KKAVSYLEKRMIS--KALKNF-GSTR 473 Query: 510 AAANYLGISRTTFWRRLKS 528 AA +LGI ++T ++ KS Sbjct: 474 KAAKHLGIDQSTVVKKCKS 492 >UniRef50_C9KLP4 Nitrogen regulation protein NR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLP4_9FIRM Length = 451 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/275 (46%), Positives = 177/275 (64%), Gaps = 12/275 (4%) Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 +H + L+ Y D+LG +P + + +A S + VLI+ ++GTGKEL AQ+IH Sbjct: 93 SHQSPDVNLQAVYHFDDVLGSAPSLLSAIRIAKRFADSVSTVLIQAQSGTGKELMAQSIH 152 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 G+ + PFVAVN AI ESLL++ELFGY EGAFTG+ R G +GLFE A+ Sbjct: 153 NA--------SGRANGPFVAVNFAAITESLLDSELFGYVEGAFTGASRHGASGLFERANH 204 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIG+ PL Q +LLRVL+E+E+ RVG P+ +DVR+I+AT+ +L+E ++QG+F Sbjct: 205 GTIFLDEIGDAPLSFQVKLLRVLQEREIRRVGSAVPIHIDVRIIAATNQDLKELVRQGKF 264 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YRLS+L L LPPL ER DI L +FL+ + + A +G+ +LL Sbjct: 265 REDLYYRLSVLPLTLPPLAERKEDIPVLVSTFLQSFFLDMGVRETRAWMEGILP---ILL 321 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQF 474 Y WPGNIREL+N++E LA P P DL P F Sbjct: 322 QYSWPGNIRELQNVVEYLANVCDSNPRPEDLPPNF 356 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 224/375 (59%), Gaps = 50/375 (13%) Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA-VL 243 A +AL+ TR+ ++ R +R R+ D++G S +M ++ + A S A +L Sbjct: 114 AVKNALETTRL---RTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTIL 170 Query: 244 IEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 303 ++GE+GTGK+L A+AIH Y +R ++ PFVA+NC AI E+L+EAELFG+E+GAF Sbjct: 171 VQGESGTGKDLVAKAIH--YQSR------RQEKPFVAINCSAIPETLMEAELFGHEKGAF 222 Query: 304 TGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363 T ++ + GLFE A GGTLFLDEIGE+ LQ +LLRVLE++ + RVGG + + VDVRV Sbjct: 223 TDAK-AMKKGLFEAADGGTLFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRV 281 Query: 364 ISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAP 423 I+A++ +LE+ ++ G FR+DL+YRL+I+ + LPPLR+R DILPL E F++ + Sbjct: 282 IAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDRKEDILPLVEFFIE----RYNRK 337 Query: 424 FSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE-- 481 F ++R + +L+ +DWPGN+REL+N +ER + E +L P ++ + + Sbjct: 338 FKKSIRGVTDNTRRLLMKHDWPGNVRELKNAIERAMILDEAE---NLRPDYLPFAVAQQQ 394 Query: 482 ---LARESAKTPA-----------PRLLTP--------------QQALEKFNGDKTAAAN 513 A ESA PA PRL+ P + A+++ NG++T AA Sbjct: 395 AMYTAFESASPPAPIQQLPNGRSLPRLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAAR 454 Query: 514 YLGISRTTFWRRLKS 528 L ISR +LK Sbjct: 455 LLDISRDALRYKLKK 469 >UniRef50_C4LCM0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LCM0_TOLAT Length = 453 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 140/321 (43%), Positives = 199/321 (61%), Gaps = 26/321 (8%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 G M+G S M +V + A + V++ GE+GTGKELAA I++ R ++S Sbjct: 143 GCMIGNSLSMRKVFHQLEKMASVDSYVMLVGESGTGKELAAHIIYQ--------RSCRRS 194 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 PF+AVNCGAI +L+++ELFG+E+G+FTG+ R G E AHGGTLFLDEIG++PL L Sbjct: 195 GPFIAVNCGAIPANLIQSELFGHEKGSFTGAFRR-HMGHIEAAHGGTLFLDEIGDLPLEL 253 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q LLR L+EK++TRVGG + +PVDVRVISAT+ +L ED++ GRFR+DLF+RL +L L+L Sbjct: 254 QVNLLRFLQEKKITRVGGTELIPVDVRVISATNRDLREDIRSGRFRQDLFFRLCVLDLEL 313 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 PPLRER DI LA F L ++ A + +R ++ ++ Y WPGN+REL+N Sbjct: 314 PPLRERGEDIELLANHF----LCSMRAGLNPLVRSFSPSALHLMRSYHWPGNVRELKN-- 367 Query: 456 ERLALFLSVEPTPDLTPQ---------FMQLLLPELARESAKTPAPRLLTPQQALEKFNG 506 R+A L + + PQ F LL+ A+ +L+T Q+AL+ Sbjct: 368 -RVARALVMCEKRVICPQDLELDSESPFPDLLIQSTTLAEARAEVDKLVT-QRALQSSGN 425 Query: 507 DKTAAANYLGISRTTFWRRLK 527 + AA LG+SR T +R ++ Sbjct: 426 NVMVAARQLGVSRVTLYRLME 446 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 139/335 (41%), Positives = 206/335 (61%), Gaps = 26/335 (7%) Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + R + +Y +++G+S ++++++ A S++ +LI GE+GTGKEL AQAIH Sbjct: 148 EEIRKVYKAKYSCKNLIGESESVKEIKKLARKVASSNSTILITGESGTGKELLAQAIHNA 207 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + PFV VNC A+ E+LLE ELFGY++GAFTG+++GG+ G FE+A GGT Sbjct: 208 --------GCRNQRPFVRVNCAAVPENLLETELFGYDDGAFTGAKKGGKPGKFELAQGGT 259 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIGE+PL +Q++LL VL+E+E+ RVGG + VP+DVRVISAT+ NLE+ ++ G FR Sbjct: 260 IFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVISATNRNLEDMVKNGTFRE 319 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSL-AALSAPFSAALRQGLQASETVLLH 441 DL+YRL+++ +LP LRER DI PL ++L L L+ Q +Q +L Sbjct: 320 DLYYRLNVINFRLPSLRERSEDI-PLLVNYLTHKLNKKLNCHVEGYTEQAMQ----LLTK 374 Query: 442 YDWPGNIRELRNMMERLALF-----LSVEPTPDLTP----QFMQLLLPELARESAKTPAP 492 Y WPGN+R+L N +ER+ F LS E P L ++ LA A+T Sbjct: 375 YHWPGNVRQLENALERMFSFTDDKILSTEHMPFLKKIVNVNSSEVNTKSLAETIAETEKK 434 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +L AL+K +G++ AA L I + +R++K Sbjct: 435 MIL---DALQKVDGNRNKAAKLLDIHLSVLYRKIK 466 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/313 (44%), Positives = 192/313 (61%), Gaps = 17/313 (5%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G+S ++ + AR+ A VL+ GETGTGKEL A+ IH+ + + P Sbjct: 266 LIGRSEALQSCKCFARKVARTKATVLLTGETGTGKELFARLIHQ--------MSNQANGP 317 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FVA+NC A+ E+LLEAELFGYEEGAFTG+RRGG G FE A GGTLFLDE GEM LQ Sbjct: 318 FVAINCAAMPETLLEAELFGYEEGAFTGARRGGAVGKFEQASGGTLFLDEAGEMSNALQA 377 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVLE K+V RVG +PV D R+I+AT+ +L + + G+FR+DL+YRL + L +PP Sbjct: 378 KLLRVLETKQVDRVGSCRPVQTDFRLIAATNADLNQLVADGKFRKDLYYRLVAITLNIPP 437 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI L +F+ + + ++ + + L YDWPGN+REL N ++ Sbjct: 438 LRERKEDIPYLISAFMD----RFAQEYGLRHKRFCEDALHAFLEYDWPGNVRELANAIDY 493 Query: 458 -LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP--QQALEKFNGDKTAAANY 514 +A+ + T + P F++ + +ES KT A R +QA+ NG+K AA Sbjct: 494 IMAIGEEEKVTSNTLPPFLRNHAAK--KESLKTVARRSEKERIEQAIVLANGNKAKAAKL 551 Query: 515 LGISRTTFWRRLK 527 LGI R T +R+LK Sbjct: 552 LGIHRATLYRKLK 564 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/392 (38%), Positives = 216/392 (55%), Gaps = 39/392 (9%) Query: 156 VVGAGLITDLAEEAGMTGIFIYSAATVRQ-----AFSDALDMTRMSLRHNTHDATRNALR 210 + G G + D A EA G F Y + +R + AL + + T R+ LR Sbjct: 92 MTGYGTV-DSAVEAMKLGAFDYISKPMRNDLVTLTVNRALSYASLQEENVT---LRDHLR 147 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +Y G MLG S M+ + TI A+S + V+I GE+GTGKEL A+AIH Sbjct: 148 EQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVARAIH--------FN 199 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + + P + VNCGAI E LLE+ELFG+E+GAFTG+ R R G FE+A GG++FLDEIG+ Sbjct: 200 SNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRN-RLGRFELAQGGSIFLDEIGD 258 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 M LQ ++LRV++EK+ R+GG + + DVR+I+ATH NLE + + RFR DLFYR+++ Sbjct: 259 MSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFREDLFYRINV 318 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + + LP LRER ADI LA FL+ + + + + +LHY WPGN+RE Sbjct: 319 IPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAI----ACMLHYPWPGNVRE 374 Query: 451 LRNMMERLALF-----LSVEPTPDL-------TPQFMQLLLPELA---RESAKTPAPRLL 495 L N++E L + + +E P T F + +PE + +L Sbjct: 375 LENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQFEKNIL 434 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL K NG K AA L ++RTT +LK Sbjct: 435 L--KALAKTNGVKNRAAKLLNLNRTTLVEKLK 464 >UniRef50_C6PY15 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY15_9CLOT Length = 554 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/326 (39%), Positives = 196/326 (60%), Gaps = 29/326 (8%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y ++G+S ++ + + S++ +LI GE+GTGKE+ AQAIH Y R D Sbjct: 230 YTFDKIIGKSKKITNAVEYAKKISDSNSTILITGESGTGKEIFAQAIHN-YSQRKDM--- 285 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 PF+A+NCGA+ +L+E ELFGYE+GAFTG+++GG AG FE+A GGT+FLDEIGEMP Sbjct: 286 ----PFIAINCGALPSNLIELELFGYEDGAFTGAKKGGNAGKFEMAEGGTIFLDEIGEMP 341 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L +Q LLRV+EE + R+GG + + ++VR+I+AT+ +L+E++ +GRFR+DLFYRL++L Sbjct: 342 LDMQVSLLRVMEEGVINRIGGCKQILLNVRIIAATNKDLKEEVSKGRFRKDLFYRLNVLP 401 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L +P LR+R D+ L E ++K + L+ ++ L Y+W GN+REL Sbjct: 402 LHVPSLRDRKEDVPLLVEYYMKKASKRLNKRIVDIDENSMEN----LKQYEWTGNVRELE 457 Query: 453 NMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAP--------RLLTPQQ---AL 501 N++E L ++ E P+ +F + E+ E+ LL L Sbjct: 458 NVIE---LTVNTEKLPE---EFCYSKVYEINIENTVFKQNTQIGNMNLELLEKNHIINVL 511 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLK 527 F G+ T AA +GI R T +R+++ Sbjct: 512 HNFKGNITLAAKVMGIGRNTLYRKIQ 537 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/324 (40%), Positives = 194/324 (59%), Gaps = 20/324 (6%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y ++G+S +++ +Q + A SS+ V++ GE+GTGKEL AQAIH+ Sbjct: 342 YTFDQIIGESGALQEAKQRAMNAACSSSNVILSGESGTGKELFAQAIHKA--------SP 393 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 ++ PFV++NC AI L+ +ELFGY EGAFTG+R+GG G FE A+ GT+FLDEIGEMP Sbjct: 394 RREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGKFEYANTGTIFLDEIGEMP 453 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L +QT LLRVLEE+ V R+G + PVDVR+I AT+ NL + ++ G FR DL+YR+++L Sbjct: 454 LHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKMVKDGSFRLDLYYRINVLH 513 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 + LPPLRER+ DI + + +L + +R+ + L+++ W GN+RELR Sbjct: 514 IHLPPLRERITDIPIIVDYYLDY----FNRFLDKKVREVAPETMAFLINHSWEGNLRELR 569 Query: 453 NMME-----RLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALE---KF 504 N +E + L +E P + + + + ++ L KF Sbjct: 570 NTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYEFEEKKKMLALMIKF 629 Query: 505 NGDKTAAANYLGISRTTFWRRLKS 528 NG+K+A A +GISR+T +R+LKS Sbjct: 630 NGNKSAVAEEIGISRSTLYRKLKS 653 >UniRef50_D0LHM6 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHM6_HALO1 Length = 493 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 134/255 (52%), Positives = 172/255 (67%), Gaps = 15/255 (5%) Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 V+G M+G S ++ V TI AR AAVLI GE+GTGKEL A+AIH DA Q + Sbjct: 157 VVGGMVGASAAIKDVFATIDKVARHKAAVLITGESGTGKELVARAIH-------DASQ-R 208 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 K FVA+NCGAI +LLE+ELFGY GAFT + R + GLFE+A GGTLFLDEIGE+PL Sbjct: 209 KGKNFVAINCGAIPANLLESELFGYRRGAFTDAVRD-KTGLFEVADGGTLFLDEIGELPL 267 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 LQ +LLRVL+E+E+ R+G ++ +DVR+++AT NL ED + GRFR DLFYRL++L + Sbjct: 268 NLQVKLLRVLQEEEIRRIGDNRTTKIDVRIVAATLRNLGEDAENGRFREDLFYRLNVLNI 327 Query: 394 QLPPLRERVADILPLAESFLKV--SLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 LP LRER ADI PLAE F+ S P + + +A+ +L Y WPGNIREL Sbjct: 328 VLPALRERRADIAPLAEHFVAAYRKRHKSSQPRAEGIS---EAAMGLLEAYAWPGNIREL 384 Query: 452 RNMMERLALFLSVEP 466 N +ER A+ L+ P Sbjct: 385 ENTIER-AMVLADGP 398 >UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTF4_9CLOT Length = 670 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 135/354 (38%), Positives = 203/354 (57%), Gaps = 42/354 (11%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 + L +Y D+LG S +E+V+ YA++ +++L+ GETGTGKEL AQ+IH Sbjct: 324 QKGLVAKYHFEDILGISDSLERVKLIARSYAQADSSILLTGETGTGKELFAQSIHNS--- 380 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 +++ PFVA+NC A+ + LL ++LFGYEEG+FTG+ +GG+ G+FE+AHGGT+FL Sbjct: 381 -----SPRRNGPFVAINCAALPKDLLSSQLFGYEEGSFTGAAKGGKPGIFELAHGGTIFL 435 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGE+P Q +LLRVL+EKEV R+ + +P+DVRVI AT+ NL ++++ RFR DLF Sbjct: 436 DEIGEIPEETQIQLLRVLQEKEVRRLSSDKVIPIDVRVICATNRNLALEVKERRFRMDLF 495 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 +R+++L+L++PPLRER DI LA+ FL+ A +R + ++ Y WP Sbjct: 496 FRINVLKLEIPPLRERKEDIPLLADHFLE---EYCRGGRLAEVRARMHGLYPRMMEYSWP 552 Query: 446 GNIRELRNMMERLALFLS-------------------------------VEPTPDLTPQF 474 GNIREL+ + ER+A+ L P + P+ Sbjct: 553 GNIRELQAVTERIAILLDQGFPMEIDAHMMMEEFGYLEGEEGGMGPEPGERPGAEEQPEP 612 Query: 475 MQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + PE + R +AL+ + + AA LGISR+T WR ++ Sbjct: 613 DRKTEPEESASGRPISECRKEDIIRALKNHHYRRQEAAQALGISRSTLWRLIRK 666 >UniRef50_C0ZHT6 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZHT6_BREBN Length = 593 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 138/336 (41%), Positives = 198/336 (58%), Gaps = 50/336 (14%) Query: 220 GQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 279 G SP + Q ++ A S + VL++GE+GTGKEL A+AIH+ ++ PF+ Sbjct: 275 GNSPAIVQAKEVARRVAASDSTVLLQGESGTGKELFAKAIHQA--------SPRRDEPFL 326 Query: 280 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRL 339 ++NC AI E L+E+ELFGYEEG+FTG+R+GG+ GLFE+A GTLFLDEIG+M + LQ++L Sbjct: 327 SINCAAIPEHLMESELFGYEEGSFTGARKGGKPGLFEVAGKGTLFLDEIGDMSMHLQSKL 386 Query: 340 LRVLEEKEVTRVGGH-QPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPL 398 LRVL+EKE+ R+GG+ +P+ + R+I+ATH +L+E + G FR DL+YRL ++ + LP L Sbjct: 387 LRVLQEKELYRIGGNGKPIRLAARIIAATHLDLQERVDAGLFRLDLYYRLHVIPIHLPSL 446 Query: 399 RERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERL 458 RER DILPLA L A + L + ++ +L H+DW GN+REL N++E Sbjct: 447 RERREDILPLANDI----LLAHANRVGKGLHGFSKETQNILFHHDWRGNVRELENVIE-- 500 Query: 459 ALFLSVEPTPDLTP---------------------------QFMQLLLPELARESAKTPA 491 +++E T + P Q LLL EL R + Sbjct: 501 -YAVNMEATSWVQPASLPIRTGRLRESSPHSVEESQGPFDWQKQGLLLKELERAA----- 554 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + T Q + NG K AA LGISR T +R+L+ Sbjct: 555 --IDTAMQQIRDRNGRKEEAAALLGISRATLFRKLR 588 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 238 bits (608), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 140/332 (42%), Positives = 202/332 (60%), Gaps = 24/332 (7%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 R L ++ ++G SP+M++V Q + YA SSA+VLI GE GTGK+LAA+A+H Sbjct: 133 RRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARALH----- 187 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 +++ PF A+NC + ESLL++E+FG+E+GAFTG+ R R G FE AHGGTLFL Sbjct: 188 ---TNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQ-RVGRFEHAHGGTLFL 243 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIG+MPL LQ +LLR LE EV RVG ++P+ VDVR+I+AT+ +L+++++ GRFR+DL+ Sbjct: 244 DEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLY 303 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 +RL + ++LPPLRE DI L FLK + P ++ E YDWP Sbjct: 304 FRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEG----YDWP 359 Query: 446 GNIRELRNMM-ERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP------- 497 GN+RELRN++ + L L E TPD P+ + P E P + P Sbjct: 360 GNVRELRNLLASMMVLDLDGELTPDDFPEDPG-VKPAGTAERPHGPDQLVGRPLDEVERY 418 Query: 498 --QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++AL+ G++ AA L IS T +R+++ Sbjct: 419 YIEKALDLTGGNREEAARLLNISERTLYRKIQ 450 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 130/335 (38%), Positives = 196/335 (58%), Gaps = 29/335 (8%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L +Y D++G+S QM + L A++ A +L+ GE+GTGKEL A AIH E Sbjct: 359 LEAKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFAHAIHNE------ 412 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 +K + F+ VNC A++E+LLE+ELFGYE+GAF+G++RGG+ GLFE A+ G++FLDEI Sbjct: 413 --SDRKYNKFIRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIFLDEI 470 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 GE+ +Q +LLRVL+EKE+ RVGG + +PV+VRVI+AT+ N+E+ M G FR DL+YR+ Sbjct: 471 GELTQNMQAKLLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDLYYRI 530 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 + + +PPLR+R+ DI L+ ++ +Q L+A L Y WPGN+ Sbjct: 531 NRYPISIPPLRQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRA----LSAYHWPGNV 586 Query: 449 RELRNMMERLALFLS---------------VEPTPDLTPQFMQLLLPELARESAKTPAPR 493 REL N++ R +FL+ +E + T Q P++ E + Sbjct: 587 RELENVLGRAMIFLNPHMEWIEKDHLPVFELEQKENDTDQGTGFDFPDIEGEKLSVAVEK 646 Query: 494 LLTP--QQALEKFNGDKTAAANYLGISRTTFWRRL 526 QQ LEK + ++T A LG+S + ++ Sbjct: 647 FEAHLIQQTLEKHHFNRTKTAKALGVSIRNLYYKM 681 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 137/321 (42%), Positives = 196/321 (61%), Gaps = 20/321 (6%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y D+ G+ P ++ Y++ A VLI GE+GTGKEL AQAIH +G Sbjct: 347 YSFEDIQGKDPLFLKIVGIARQYSKLYANVLIHGESGTGKELFAQAIHNA-----SCPEG 401 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 PF+++NC A+ +L+E+ELFGYE GAFTG+ R GR GL E+A+ GTLFLDEIG+MP Sbjct: 402 ----PFISINCSAMPRNLIESELFGYEGGAFTGAERKGRPGLIELANEGTLFLDEIGDMP 457 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L +Q LLRVLEEK+V RVGG + +PV RVISA++ NL +Q+ FR DL+YRL++ + Sbjct: 458 LEIQPVLLRVLEEKKVMRVGGKKYIPVSFRVISASNKNLNIMVQEKTFREDLYYRLAVFK 517 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 LQ+PPLR+R DI+ LA+ F+K S + +A++ V+ Y WPGN+R+L Sbjct: 518 LQIPPLRKRPDDIISLAQFFIK----GTSQKVGRKMPVLSKAAQKVIKEYAWPGNVRQLE 573 Query: 453 NMMERLALFLS---VEPTPDLTPQFMQLLLPELARESAKTPAPR---LLTPQQALEKFNG 506 N M A+ L+ V DL + PE +R + + R + + ALE+ N Sbjct: 574 NSM-VYAVSLTQGDVIGAEDLPDDITNPITPENSRLFSSVMSLREMEITAIKNALEQTNQ 632 Query: 507 DKTAAANYLGISRTTFWRRLK 527 + AAN LG+ ++T +++LK Sbjct: 633 NIANAANILGLGKSTLYKKLK 653 >UniRef50_C0CT34 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT34_9CLOT Length = 695 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 125/248 (50%), Positives = 171/248 (68%), Gaps = 17/248 (6%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y + ++ G+S +E+ R+T + +ARS A+VLI G +GTGKEL A AIH AR D Sbjct: 351 KYTVYNIKGESEAIERCRKTAMKFARSRASVLITGASGTGKELFASAIHNAS-ARRDG-- 407 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 PFV +NCGA+ ESLLE+ELFGYE GAFTG+++ G+ GLFE+AHGGTLFLDEIGEM Sbjct: 408 -----PFVPINCGALVESLLESELFGYESGAFTGAKKEGKQGLFEVAHGGTLFLDEIGEM 462 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL LQ +LLR L+E+EV RVGGH +PVDVR+I+AT+ +L +++G+FR DL+YRL++L Sbjct: 463 PLGLQVKLLRALQEREVVRVGGHNVIPVDVRIIAATNRDLRTLVKEGKFRTDLYYRLNVL 522 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 L+LP L ER DILPL +S L + +A ++ +++ GN+REL Sbjct: 523 PLELPGLDERREDILPLFYDIRN------DEGYSFELDREARA---CIMSHNYEGNVREL 573 Query: 452 RNMMERLA 459 N +E L Sbjct: 574 HNCVEYLG 581 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 140/404 (34%), Positives = 224/404 (55%), Gaps = 35/404 (8%) Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 G+I ++K G E V I + E G+ G ++ +A ++ LD L + Sbjct: 189 GEIQKIK--GCEMVATRVPIYEEGEIVGVLGKVLFRDIKEVKALAERLDAATNELDYYKG 246 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + R ++Y +++G S ++ + ++ + ++S + VLI GE+GTGKEL A AIH Sbjct: 247 E-VRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDG 305 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 R+ A F+ VNC AI E+LLEAELFGYE+GAFTG+ + G+ G FE+A+GGT Sbjct: 306 SLRRYGA--------FIRVNCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGT 357 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIG+MP +Q +LLR L+E+EV R+G + + +DVR+I++T+ NLE+ + Q +FR Sbjct: 358 IFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFRE 417 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL++ + +PPLRE D+ E + + L+ + + +L Y Sbjct: 418 DLYYRLNVFNINVPPLREMKDDL----EKLINFIIKDLNDEMGLNVNGVSSEANKILNSY 473 Query: 443 DWPGNIRELRNMMER-LALFLSVEPTPDLTPQFM------------------QLLLPELA 483 WPGNIREL+N++ER + + T D PQ++ ++ L L Sbjct: 474 HWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLE 533 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 S A + L + AL++ N +K AA L I R+ +++L+ Sbjct: 534 LRSVVKEAEK-LAIETALKQTNNNKKKAAELLNIHRSGLYKKLE 576 >UniRef50_A6TUL7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUL7_ALKMQ Length = 632 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 126/325 (38%), Positives = 194/325 (59%), Gaps = 33/325 (10%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 + D+ S M +V + + +++ A L+ GE+GTGK L A+AIH E +K Sbjct: 323 IADLSVDSDCMREVIRYMKKVSKTDATTLLRGESGTGKTLFAKAIHNE--------SHRK 374 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 ++PFV+++C I E+ EAELFGYE GA+TG+ + G+AG E+AHGGT+FLDEIGE+P+ Sbjct: 375 NNPFVSIDCTTIPENFFEAELFGYEAGAYTGANKNGKAGKLEMAHGGTVFLDEIGEIPVE 434 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 Q++LLR L+EKE R+GG VDVR+I+AT+ LE + +G+FR+DL+YRL+++ + Sbjct: 435 TQSKLLRFLQEKEFERIGGITTKKVDVRIIAATNQELETMISKGQFRKDLYYRLNVININ 494 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LPPLRER+ +I L L + +G++ L+HY+WPGNIREL N+ Sbjct: 495 LPPLRERLEEIPSLTNKILLDFCREVGIELKEIGEEGMKE----LIHYNWPGNIRELENL 550 Query: 455 MERLALFL------------SVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALE 502 ++RLA+ +E T + P +Q L ++ + + ALE Sbjct: 551 VKRLAINSEQKMIERSDIAREIEITTKIQP--IQALEGQMNQSEKQNII-------DALE 601 Query: 503 KFNGDKTAAANYLGISRTTFWRRLK 527 K++ +KT A LGI+R T + ++K Sbjct: 602 KYDFNKTQTAKGLGITRQTLYNKIK 626 >UniRef50_A8S521 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S521_9CLOT Length = 690 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 120/266 (45%), Positives = 173/266 (65%), Gaps = 15/266 (5%) Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 LR H + RY +L + ME V + ++ S + +LI GETGTGKEL A Sbjct: 310 LRKRMHS---DGFTARYDFSHILYRDSCMEAVISQAVKFSYSDSNILIHGETGTGKELFA 366 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 Q+IH + +R ++ PFVA+NC A+ E+LLE+ELFGY EGAFTG+ RGG+ G FE Sbjct: 367 QSIH------NSSR--RRKGPFVAINCAALPENLLESELFGYVEGAFTGASRGGKMGFFE 418 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 IAH GT+FLDEIG++ LQ+RLLRV++E+E+ R+G +P+DVRVI AT+ +L++++ Sbjct: 419 IAHKGTIFLDEIGDISPKLQSRLLRVIQEREIIRLGNDTVIPIDVRVICATNRDLKKEVS 478 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DL YRL +L L LPPLR+R DIL LA+ ++ + A ++G + Sbjct: 479 RGNFREDLLYRLDVLELNLPPLRKRKQDILYLADRMVRFEHERTGSRLEAITQEGRE--- 535 Query: 437 TVLLHYDWPGNIRELRNMMERLALFL 462 +L+ Y+WPGN+RE+RN ER+ + Sbjct: 536 -LLMRYNWPGNVREMRNFCERICILC 560 Score = 41.2 bits (95), Expect = 0.093, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 19/162 (11%) Query: 46 FEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTS 105 +E + +L D +IA G LK R ++P +K +GYDV++A+ + + + Sbjct: 40 YEVVQDFYNNRLEQVEADVVIARGFTAHTLK-RKNIPCAELKSTGYDVMKAVNECMQKGN 98 Query: 106 SIGVVTYQETIPALVAFQKTF----------NLRLDQRSYITEEDARGQINELKANGTEA 155 E I + AF + NL L + E +++ +G +A Sbjct: 99 I-------ERIAVVGAFNMVYGAEQMCHLYPNLGLGCYAEDDETKLEMAVHQAMKDGNQA 151 Query: 156 VVGAGLITDLAEEAGMTGIFIYSA-ATVRQAFSDALDMTRMS 196 +VG +AE GM I+S V A S+A+ + ++ Sbjct: 152 IVGGYSTVQIAERLGMPAAMIHSGIEAVNHAISEAIAVAHLT 193 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 139/320 (43%), Positives = 201/320 (62%), Gaps = 22/320 (6%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 + L+ +Y +++G SPQM ++ + I A S+A+VLI GETGTGKEL A AIH Sbjct: 132 KEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHY---- 187 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 R GK PFVA++C A++E +LE+ELFG+E+GAFTG+ + R G FE+A GGTLFL Sbjct: 188 -RSERAGK---PFVALHCAALSEGILESELFGHEKGAFTGAIQS-RKGRFELADGGTLFL 242 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DE+ EM L +Q +LLRVLE+ E RVGG + + VDVR I+AT+ NLEE++ +GRFR DLF Sbjct: 243 DELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLF 302 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALR-QGLQASETVLLHYDW 444 YRL+++ +Q+PPLRER DI P+ ++ V A + ++A LL + W Sbjct: 303 YRLNVINIQMPPLRERKDDI-PILSNYFAVKYAKKYKKEIKGFDPEAIKA----LLSHHW 357 Query: 445 PGNIRELRNMMERLALF-----LSVEPTPD-LTPQFMQLLLPELARESAKTPAPRLLTPQ 498 GNIREL+N +ER + +SV+ P+ + P + + ++ + A + + Q Sbjct: 358 QGNIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEAEKEII-Q 416 Query: 499 QALEKFNGDKTAAANYLGIS 518 + L+ NG K +AA LGIS Sbjct: 417 RTLQITNGSKQSAAKILGIS 436 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 28/355 (7%) Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 S A +R + SD ++ RM A R + D+ G+S + + Q AR Sbjct: 349 SGAVIRLSRSDKVN--RMV-------ANRGGTPASFKFEDIKGKSTSLAKSIQIAQNVAR 399 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 + VL+ GE+GTGKEL AQ+IH Y K PFVAVNC ++ +L+E+ELFG Sbjct: 400 TGYNVLLIGESGTGKELFAQSIHNSY---------KADGPFVAVNCASLPRNLIESELFG 450 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE G FTG+ R GR G E+A+GGTLFLDEIG+MPL +Q LLRVLEEK VTR+GG + + Sbjct: 451 YEGGTFTGADRNGRPGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGGSRGI 510 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 PVD RVI+AT+ NL +++ FR DL++RLSI ++ +PPLRER D++ LAE F++ Sbjct: 511 PVDFRVIAATNKNLSLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFIE--- 567 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQL 477 +S + + + AS + Y WPGNIR+L+N M + +S +L+ ++ Sbjct: 568 -DISKKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNAM-VYGVNMSTNGVIELSNLPDEM 625 Query: 478 LLPELARESAKTPAPRLLTPQ-----QALEKFNGDKTAAANYLGISRTTFWRRLK 527 + R T L + +AL + D + A+ LGI RTT +R+LK Sbjct: 626 TSNDYFRTKVNTRKLTLAEIEKEVIFEALSQTGNDASEASRILGIGRTTIYRKLK 680 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 136/325 (41%), Positives = 195/325 (60%), Gaps = 21/325 (6%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y D++G S + R+ A +L+ GE+GTGKE+ AQA+HRE QG Sbjct: 239 YSFQDIIGSSEAIHFAREMARRIAGQDITILLRGESGTGKEMFAQAVHRE----SQRAQG 294 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 PFVA+NC AI ++LLE+ELFGYE GAFTG++R G+AG FE+AHGGT+FLDEIG+M Sbjct: 295 ----PFVAINCAAIPDNLLESELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMS 350 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L LQ +LLRVL+E++V RVGG Q V VDVR+I+ATH NLEE +Q+ FR DL+YRL+++ Sbjct: 351 LHLQAKLLRVLQERKVERVGGTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIP 410 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 + +PP+RER D+ L E F+K LS + + + ++ Y WPGN+RE+ Sbjct: 411 ITIPPVRERKEDLPILIEYFMK----RLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIV 466 Query: 453 NMMERLALFLSVE-PTPDLTPQFMQL--------LLPELARESAKTPAPRLLTPQQALEK 503 NM+E + + + T D P ++++ L +A ++ ++L + Sbjct: 467 NMVEHVIYLETGDLITADSLPAYLKIKEGKSTSQLQINVAPHGEESFKQQVLHLLDVYGR 526 Query: 504 FNGDKTAAANYLGISRTTFWRRLKS 528 K A +GIS T +RRLK Sbjct: 527 HTEGKKRIAKEMGISLPTLYRRLKK 551 >UniRef50_C5AKI5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=5 Tax=Proteobacteria RepID=C5AKI5_BURGB Length = 467 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 150/330 (45%), Positives = 200/330 (60%), Gaps = 39/330 (11%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 +LG S M V++ + A + + VLI GETGTGKE+AA+ +HRE AR G P Sbjct: 146 LLGISEAMRGVQKRLGRAAAADSTVLITGETGTGKEVAARVLHRE-----SARAGG---P 197 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FVAVNC AI E+LLE+ELFG+++GAFTG+ R G AHGGTLFLDEIG+MP+ +Q Sbjct: 198 FVAVNCAAIPEALLESELFGHDKGAFTGAH-APRQGRIAQAHGGTLFLDEIGDMPIAMQA 256 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E++VT +G +P+ VDVRV++ATH +L+E + G FR+DL YRL ++ L +PP Sbjct: 257 KLLRVLQERQVTPLGAARPMAVDVRVVAATHRDLQERVAAGAFRQDLLYRLDVIPLHIPP 316 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA-SETVLLHYDWPGNIRELRNMME 456 LRERVADILPLAE FL AA R+ L ++ +L+ + WPGN+REL N +E Sbjct: 317 LRERVADILPLAEHFLAALA-------PAAARKRLSVEAQRLLVTFTWPGNVRELANAIE 369 Query: 457 RLALFLSVEPTPDLTPQFMQLLL------------------PELARESAKTPAPRLLTPQ 498 R + ++ P P LT LL EL A R L Sbjct: 370 RAS---ALAPGPLLTRDDFAFLLDAAAGAADADADAVPAQFAELPLNEALAQLERALI-V 425 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +AL NG++ AA LGISR + + RL S Sbjct: 426 RALASSNGNRAEAARRLGISRQSLYTRLAS 455 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 134/323 (41%), Positives = 197/323 (60%), Gaps = 23/323 (7%) Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 ++ DM+ +SPQM++++ I + A S++ VLI GE+GTGKE A AIH + +GK Sbjct: 281 IMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIHL------GSDRGK 334 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 PF+ VNC +I ESL+E+E+FGY GAFTG+ + G+ G E A GGTLFLDEIGEMPL Sbjct: 335 G--PFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGEMPL 392 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 LQ +LLRVL+++E+ R+G + + V++R+++AT+ L + +G FR+DL+YRL+++ L Sbjct: 393 ALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNVINL 452 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 LPPLRER+ DI PL F+ L A S + LL Y WPGNIREL N Sbjct: 453 HLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAM----ATLLQYSWPGNIRELEN 508 Query: 454 MMERLALFLSVEPTPDLTPQFMQLL-----LPELARESAKTPAPRLLTPQQ-----ALEK 503 ++ER A+ + +L Q++ L ++ + RL ++ ALEK Sbjct: 509 VVER-AVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAAALEK 567 Query: 504 FNGDKTAAANYLGISRTTFWRRL 526 G+KT AA L +SR+ + +L Sbjct: 568 AGGNKTKAAKLLNLSRSRLYDKL 590 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 226/399 (56%), Gaps = 41/399 (10%) Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + ++D G++ ++ G + V+ + I + G +F D ++M Sbjct: 224 LEKKDFEGEVGPVEIKGIKFVINSSPIAVKGQRVGTVLVF--------------SDFSKM 269 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + + A++ + D++G+S ++ + + A S VL+ GE+GTGKEL Sbjct: 270 --QESVYKASK--MSEIVTFDDIVGESDAIKYAKSQAIQIADSEVPVLLLGESGTGKELF 325 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH + +K+ F+ +NCGAI E+L+E+ELFGYE+G+FTG+ G+ G F Sbjct: 326 ARAIH--------FQSSRKNEIFMPINCGAIPETLIESELFGYEKGSFTGANVTGKIGKF 377 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A GT+FLDEIG++PL +Q +LLR LEEKE+ R+GG+ P+ V+ R+ISATH +L + + Sbjct: 378 ELAKDGTIFLDEIGDLPLSMQVKLLRALEEKEIVRIGGYTPIKVNPRIISATHKDLYQMV 437 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 +G+FR DLFYRL+++ + +PPLRER DI+ LA FL+ + + ++ + S Sbjct: 438 LEGKFREDLFYRLNVVPIVIPPLRERGYDIIILANYFLE----KFNKIYGKNIKGFSKES 493 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL 495 E +LL Y +PGNIRELRN++E F E ++P+ + L E KT A + Sbjct: 494 EKLLLSYPFPGNIRELRNLIEYAVNF---ESKDYISPETINQRLHRKTLEEGKTLAEMVK 550 Query: 496 TPQQALEK-----FNGD---KTAAANYLGISRTTFWRRL 526 ++ + K + D K A LGIS T +R++ Sbjct: 551 NYEKNVIKEYMLRYGSDVESKKLIAKKLGISIATLYRKM 589 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 237 bits (605), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 115/247 (46%), Positives = 167/247 (67%), Gaps = 19/247 (7%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++ S +M + ++ A + VLI GE+GTGKEL A+ IH + ++ Sbjct: 383 NLVVTSAKMRNLLDMVVRLASVDSTVLITGESGTGKELIAEIIH--------SNSSRRDK 434 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PF+ VNCGAI E+LLE+ELFGY+ GAFTG+++ G++G E+A GGTLFLDEIGEMPL LQ Sbjct: 435 PFIKVNCGAIPENLLESELFGYDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQ 494 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 ++LR L+ KE+ RVGG + VDVR+++AT+ NL E +QQ +FR DL+YRL+++ + +P Sbjct: 495 VKMLRFLQNKEIIRVGGTNYINVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIP 554 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV---LLHYDWPGNIRELRN 453 PLR+R DI PLA F++V F+ ++ + S V L+ YDWPGNIREL N Sbjct: 555 PLRDRKDDIPPLAAHFIEV--------FNHKYKKNKKISPGVVDILMQYDWPGNIRELEN 606 Query: 454 MMERLAL 460 ++ER+ + Sbjct: 607 LIERMVV 613 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 136/333 (40%), Positives = 199/333 (59%), Gaps = 35/333 (10%) Query: 208 ALRTRYVLGD------MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 LR R VL + ++GQS Q+ ++++TI A VLI+GETGTGKEL A+ IH Sbjct: 129 VLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELIARGIH- 187 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + F+A+NCG L++ ELFG+E AFTG++RG + G+ E+A+GG Sbjct: 188 -------MLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQK-GILEVANGG 239 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+F DE+ E+PL +Q +LLRVL+E+ RVGG Q +PVD+RV+SAT+C+L+E+++ G FR Sbjct: 240 TVFFDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFR 299 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DLFYRL+++ L PPLR+ DI L FL+ + + + Q + +L++ Sbjct: 300 QDLFYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTETQSIDTIS-----QETLDILMN 354 Query: 442 YDWPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL--TPQ 498 Y +PGN+REL N+ +R LAL +PD LLPE R + R L + Sbjct: 355 YSFPGNVRELENISQRALALARGTVFSPD--------LLPEEIRNIDRNKPLRTLEEVER 406 Query: 499 QALEKF----NGDKTAAANYLGISRTTFWRRLK 527 +EK NG+KT AA LGI R + WR++K Sbjct: 407 DHIEKVMLATNGNKTQAAKILGIDRVSLWRKMK 439 >UniRef50_C1SMK9 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK9_9BACT Length = 535 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/337 (39%), Positives = 200/337 (59%), Gaps = 37/337 (10%) Query: 205 TRNALRT----RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 T+N L+ + G M+ +S +M++V AR + +LI GE+G GKE+ A+ IH Sbjct: 218 TKNKLKNLELKKNCSGGMVVRSKKMQEVTDLAHRAARVNTTILICGESGVGKEVLARYIH 277 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 ++ PFVAVNCGA +ESLLE+ELFG+ +G+FTG+ + + GLFE A G Sbjct: 278 --------SKSPDSDKPFVAVNCGAFSESLLESELFGHAKGSFTGAEKEHK-GLFEEAEG 328 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIGE +Q +LLRV++EKE+ RVG +QP +++R+ISAT+ NLE+++Q+G F Sbjct: 329 GTLFLDEIGETSKNMQVKLLRVIQEKEIRRVGENQPRKINLRIISATNKNLEKEVQEGNF 388 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R+DLFYRL+++ +++PPL +R DILPLA F+K + ++ + +A LL Sbjct: 389 RKDLFYRLNVINIKIPPLCQRTEDILPLAHCFIKSAAEEMNVQVTGIAPSASEA----LL 444 Query: 441 HYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFMQ--------LLLPELARESAKTP 490 Y+WPGN+REL N++ R A S+ DL P+ + + L E+ +E + Sbjct: 445 RYNWPGNVRELHNVIHRAAALADSSMIEENDLPPELLTSCSAPSTPISLAEMEKEHIRN- 503 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L NGDK A L I T +R++K Sbjct: 504 ---------CLIINNGDKKRTAQTLNIGIATLYRKIK 531 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 150/345 (43%), Positives = 197/345 (57%), Gaps = 53/345 (15%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++G++P M+ V + I +RSS +VLI GE+GTGKEL A A+HR H R Sbjct: 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR-----HSPR---AKA 190 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PF+A+N AI + L+E+ELFG+E+GAFTG+ R G FE A GGTLFLDEIG+MPL +Q Sbjct: 191 PFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRFEQADGGTLFLDEIGDMPLDVQ 249 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 TRLLRVL + + RVGG+ PV VDVR+I+ATH NLE+ +Q+G+FR DLF+RL+++R+ LP Sbjct: 250 TRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLP 309 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA------SETVLLHYDWPGNIRE 450 PLRER DI LA FL+V AA G++A +E L WPGN+R+ Sbjct: 310 PLRERREDIPRLARHFLQV----------AARELGVEAKLLHPETEAALTRLAWPGNVRQ 359 Query: 451 LRNMMERLA----------------LFLSV--EPTPDLTPQFMQLLLPELARESAKTPAP 492 L N L LF S E T + P LL + A + ++ Sbjct: 360 LENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQ 419 Query: 493 RLLTPQQ----------ALEKFNGDKTAAANYLGISRTTFWRRLK 527 LL+ Q AL G K AA LG R T R+LK Sbjct: 420 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 >UniRef50_UPI0001BC5B22 signal-transduction and transcriptional-control protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5B22 Length = 577 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/253 (46%), Positives = 172/253 (67%), Gaps = 13/253 (5%) Query: 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREY 263 N+L+ R + +LG S ++ +++ I + A S+++V I GE+GTGKEL A A+H E Sbjct: 257 GINNSLQKRDI-DKILGVSSKIMSIKEKIQIIAPSASSVFITGESGTGKELVATALHSE- 314 Query: 264 FARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTL 323 +K+ PF+A NC +I E+LLE+ELFGY +GAFTG+ GR G+FE A+GGTL Sbjct: 315 -------SERKNFPFIAFNCASIPENLLESELFGYVKGAFTGADNKGRIGIFEAANGGTL 367 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDE+G+MP LQ +LLRVLE KE+TR+G +Q + +DVR+I+AT+ N+EE + +G FR D Sbjct: 368 FLDEVGDMPSYLQVKLLRVLERKEITRLGSNQVIKIDVRLIAATNKNMEELVTKGEFRED 427 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 L+YRL+++ ++LPPLRER DI LA++F+ + L+ S + + E Y Sbjct: 428 LYYRLNVIPIKLPPLRERKEDIKILAKNFIDKYSSILNKTVSGIDQNFWRKME----EYS 483 Query: 444 WPGNIRELRNMME 456 WPGN+REL+N ME Sbjct: 484 WPGNVRELQNSME 496 >UniRef50_Q01QL4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QL4_SOLUE Length = 457 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 143/325 (44%), Positives = 201/325 (61%), Gaps = 38/325 (11%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH- 276 ++G S M Q+ I L A + VLI GETGTGKELAA+A+H GK+S Sbjct: 137 LIGGSRGMRQLHHIIHLVAGRRSTVLITGETGTGKELAARALHL---------GGKRSSG 187 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 P V+VNC A+ ESLLE+ELFG+ GAFTG+ + R G FE A GGTLFLDEIGE+P+ LQ Sbjct: 188 PMVSVNCHALPESLLESELFGHVRGAFTGAFQN-RIGRFEQAQGGTLFLDEIGELPIDLQ 246 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRVL+E+EV R+G + + VD+RV++AT+C+L +++G+FR DL+YRL+++ L++P Sbjct: 247 AKLLRVLQEREVQRLGSSETIKVDIRVVAATNCDLPRRIEEGKFREDLYYRLNVVPLEMP 306 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLR R+ D+ LA F++ + A S P R+ L+ +L Y WPGN+R+L N++E Sbjct: 307 PLRRRLEDVPMLAAHFVEKACRAESIPPKMLTREALE----LLCGYSWPGNVRQLENVVE 362 Query: 457 RLALFLSVEPTPDLTPQFMQLLLPELARESA-KTPAPRLLTP------------------ 497 +A+ LS E LTP M +LP R+ A P P + P Sbjct: 363 -MAIALS-EDRRTLTP--MDFVLPATTRKPAPAAPGPLIALPADGLDYERTLAVIERSIL 418 Query: 498 QQALEKFNGDKTAAANYLGISRTTF 522 +QAL + G+K AAA+ L + RTT Sbjct: 419 EQALRRTGGNKKAAADMLHLKRTTL 443 >UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=17 Tax=Acinetobacter RepID=B0VDC3_ACIBY Length = 473 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/404 (37%), Positives = 229/404 (56%), Gaps = 45/404 (11%) Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 D +++ N AV+ A D+A A G F + + V Q D L ++ + Sbjct: 66 DLVKHVSQNYTNTPIAVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQK 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 HDA NAL + ++G+S ++Q+R I ARS A V + GE+GTGKE+ A + Sbjct: 126 VEHDAAENALENKL----LIGRSLPIQQLRIAIKKIARSQAPVFVTGESGTGKEVVANLV 181 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR + PF+A+NCGAI L+E+ELFG+++G+FTG+ + + GL AH Sbjct: 182 HR--------LSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQD-KQGLILSAH 232 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GG+LFLDEI E+PL +Q +LLR ++EK++ VG Q + VD RVISA+H +L+ ++QG+ Sbjct: 233 GGSLFLDEIAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGK 292 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFL-KVSLAALSAPFSAALRQGLQASETV 438 FR+DLF+R+ ++ L LPPLRER D+L LA F+ K+ + + P +Q +A+ET Sbjct: 293 FRQDLFFRIHVMDLILPPLRERGEDVLLLANHFIQKICMEWETPP-----KQLTEAAETY 347 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTP-------- 490 LL +PGN+RELRNM+ER A+ LS + T D++ L P R + P Sbjct: 348 LLQQHFPGNVRELRNMIER-AITLSEDATIDISH-----LHPAPLRANISNPFVSATQNI 401 Query: 491 -----APRLLT--PQQALEKF--NGDKTAAANYLGISRTTFWRR 525 AP+++ P + LE++ N +K N L + T W R Sbjct: 402 QTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNM---THWNR 442 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 125/325 (38%), Positives = 204/325 (62%), Gaps = 22/325 (6%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 + Y L +++G+S + + + A +++ VLI GE+GTGKE+ A AIH E RH+ Sbjct: 259 KANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFAHAIHSES-NRHEG 317 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 PFV VNC AI LLE+ELFGYE GAFTG+++ G+ G FEIA+ GT+FLDEIG Sbjct: 318 -------PFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTIFLDEIG 370 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MPL +Q +LLRV++E+EV +VGG +++R+I+AT+ NLE +++G+FR DL+YRL+ Sbjct: 371 DMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFREDLYYRLN 430 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 ++ +++PPLRER DI+ ++ +K LS ++ + +E L Y+W GN+R Sbjct: 431 VVTIEIPPLRERGNDIILISNHLIK----KLSVDLDKKVKGISKEAEQYLKIYEWKGNVR 486 Query: 450 ELRNMMERL------ALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQALE 502 EL N++ER + + V+ P ++T + + ++ +L A++ ++ AL Sbjct: 487 ELENILERAINIMENSEIIQVKDLPKEITGKKVSMVPKKLQDILAESEKNAIIL---ALR 543 Query: 503 KFNGDKTAAANYLGISRTTFWRRLK 527 +G+K+ AA L I RT+ + +++ Sbjct: 544 AADGNKSKAAKILDIGRTSLYEKIE 568 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 133/328 (40%), Positives = 202/328 (61%), Gaps = 25/328 (7%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 R +Y L + GQ+ ++ +V++ I A S VLI+GE+G GKE+AA+ IH Y + Sbjct: 414 RKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIH--YLSE--- 468 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + PFVA+NC AI E+LLE+ELFGYEEGAFTG++RGG+AG E A GGTLFLDEIG Sbjct: 469 ---RADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIG 525 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MPL +Q +LLR ++ +E R+G + P VD+R+I+AT+ L + +++GRFR DL+YRL+ Sbjct: 526 DMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLN 585 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 + + +PPLRER DI L F+ A + + +L++Y WPGNIR Sbjct: 586 VFNINIPPLRERRDDIPLLVNRFMN----EFCERRKMAPKIVTSEAMNILMNYSWPGNIR 641 Query: 450 ELRNMMERLALFLS----VEPT---PDLTPQFM---QLLLPELARESAKTPAPRLLTPQQ 499 EL+N++ER A +L+ ++P LT + + ++ +E+ +L+ + Sbjct: 642 ELQNVIER-AYYLAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLII--E 698 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLK 527 L+ N +K A A LGI R T ++++K Sbjct: 699 GLKATNYNKLACAKLLGIPRATLYQKIK 726 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 145/334 (43%), Positives = 205/334 (61%), Gaps = 27/334 (8%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 + L +Y L ++G S M+ V + I A S A VL+EGE+GTGKEL A AIH+ Sbjct: 135 KRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQ---- 190 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS--RRGGRAGLFEIAHGGTL 323 +K+ PFV V+C A++ LLE+ELFG+E+GAFTG+ RR GR FE A GTL Sbjct: 191 ----LSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGR---FEEAARGTL 243 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDEIGE+ LP Q +LLR L EK + RVG ++ V VDVRVI+AT+ NLE+ +++G+FR D Sbjct: 244 FLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFRED 303 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 LF+RL+++R+ +PPLRER DI LA++F LA +A + + + +LL YD Sbjct: 304 LFFRLNVVRIVMPPLRERKEDIPLLAQAF----LAEFAAENGKKIDRLSPEAMKILLEYD 359 Query: 444 WPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQLLLPEL-ARESAKTPAPRLLTPQQAL 501 WPGN+REL+ +E + L E P P+ +++ P L A S ++ P ++A Sbjct: 360 WPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAE 419 Query: 502 EKF--------NGDKTAAANYLGISRTTFWRRLK 527 ++ G KT+AA LGISR T R++K Sbjct: 420 KRLILHALRVCQGKKTSAAKKLGISRKTLQRKIK 453 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/329 (42%), Positives = 196/329 (59%), Gaps = 41/329 (12%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 D++ S +M V + AR+ VLI GE+GTGKEL A+AIH E ++ Sbjct: 205 FNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIHLE--------SPRR 256 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 + PFV +NC A+ ESLLE+ELFGY EGAFTG+++GG+ GL E AH GTLFLDEI E+P Sbjct: 257 TKPFVPLNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTH 316 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLRVL+E +V R+GG + +PVD+R+I+AT+ NLE +++G+FR DL++RL++ LQ Sbjct: 317 LQAKLLRVLQEGKVRRIGGQEEIPVDIRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQ 376 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV------LLHYDWPGNI 448 +PPLRERV DI L FL + A R+G+Q E L Y WPGN+ Sbjct: 377 IPPLRERVEDIEVLTYHFLN----------TFAKRRGIQYFEITENALNKLKAYSWPGNV 426 Query: 449 RELRNMMERLALFLS---VEPTPDL---TPQ---FMQLLLPELARESAKTPAPRLLTPQQ 499 REL+N++ER AL L+ V D+ PQ F+ L E + K R L Sbjct: 427 RELQNVIER-ALTLADDGVIEAKDIILDNPQNTYFVARTLEEAVNQVEKELIERALKQYP 485 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ + AA LG++ TT ++K Sbjct: 486 SIRQ-------AARSLGVTHTTLRNKIKK 507 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/341 (41%), Positives = 195/341 (57%), Gaps = 36/341 (10%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 R LR +Y +++G S M+ V + + + +LI GE+GTGKEL A+AIH + Sbjct: 144 RQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAIH---YN 200 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 H ++ PFVA+NCGAI LLE+ELFG+ GAFTG+ + G F+ AH GT+FL Sbjct: 201 GH-----RREKPFVAINCGAIPAELLESELFGHVRGAFTGAV-ADKTGKFQQAHQGTIFL 254 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIG MPL LQ +LLRVL+E+EV +VG + + +DVRVISAT+CNLEE+++QGRFR DL+ Sbjct: 255 DEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLY 314 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL+++ + LPPLRER DI LA FL+ + ++ P + + E +Y WP Sbjct: 315 YRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLE----NYHWP 370 Query: 446 GNIRELRNMMER--------------LALFLSVEPTPDLTPQFMQLLLPELARESAKTPA 491 GN+REL N++ER L +S D P Q+ P L P Sbjct: 371 GNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDP---QISCPRLTESGMDMPE 427 Query: 492 -----PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R L + A+ G K AA+ L I RTT ++K Sbjct: 428 VIAGIERCLI-KSAMGLSGGVKARAASLLNIKRTTLVEKIK 467 >UniRef50_Q0HDD1 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Proteobacteria RepID=Q0HDD1_SHESM Length = 476 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 142/321 (44%), Positives = 198/321 (61%), Gaps = 36/321 (11%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G S M+ V+Q I A ++A VLI+GE+GTGKEL A+ +H RQG P Sbjct: 170 IIGSSEAMKSVKQVIERVAPTNAVVLIQGESGTGKELVARQLHL-----LSGRQG----P 220 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FV VNCG+IA LLE+ELFG+ GAFTG++ G R GLF A GGT+FLDEIGEMPL +QT Sbjct: 221 FVPVNCGSIAPELLESELFGHTAGAFTGAK-GNREGLFSFASGGTIFLDEIGEMPLKMQT 279 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 LLRVLE+K + VG + V +DVRVI+AT+ L ++++ G FRRDL+YRL++L + +PP Sbjct: 280 ALLRVLEQKAIRPVGSEKEVNIDVRVIAATNRTLVDEVEAGNFRRDLYYRLNVLDILIPP 339 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV--LLHYDWPGNIRELRNMM 455 LRER D++ L F + A L +R+ + + E + L ++WPGNIRELRNM+ Sbjct: 340 LRERPEDVVELTHHFTRQLAAEL------GVREVVWSHEDMVKLQQHEWPGNIRELRNMI 393 Query: 456 ERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN---------G 506 ER L +P + Q ++ ES+ + L P + +EK + G Sbjct: 394 ERCILL--GKPPAEYWKQ-------QVKTESSASQGYPLDWPLKEVEKHHVTSVVDLHSG 444 Query: 507 DKTAAANYLGISRTTFWRRLK 527 +K+AAA LG+SR T R+ K Sbjct: 445 NKSAAARDLGVSRKTLDRKYK 465 >UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0P6_DESRD Length = 452 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 209/361 (57%), Gaps = 28/361 (7%) Query: 177 YSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYA 236 Y VR S+AL+ + L R+ +R + L +++G++P+M+ +++ I A Sbjct: 106 YKPNEVRLLTSNALEKRLLRLEVQ---ELRSMVRNKESLPNLIGKNPRMQNLKREIARVA 162 Query: 237 RSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELF 296 VLI GETGTGKEL A+ IH + F+AVNCGA+ E LL ELF Sbjct: 163 PLDCNVLILGETGTGKELVAKTIHNMSM--------RADQKFLAVNCGALNEELLGNELF 214 Query: 297 GYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQP 356 G+E+ AFTG++R + G+FE GGTL LDEIG+MPL +Q +LLRVL+EK + R+GG + Sbjct: 215 GHEKEAFTGAQRV-KKGVFEALAGGTLLLDEIGDMPLAMQVQLLRVLQEKSIMRIGGTRE 273 Query: 357 VPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVS 416 +PVD RV++AT+ L+ED+Q G FR+DL+YRL++ L++PPLRER DI PL F + Sbjct: 274 IPVDTRVLAATNRPLQEDVQAGGFRQDLYYRLNVFTLRIPPLRERADDI-PL---FCRYF 329 Query: 417 LAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQ 476 L + F+ + + +L HY +PGN+REL N++ER A+ L P + + Sbjct: 330 LEKYTLEFNKTIERFSDEVVEILQHYQFPGNVRELENIIER-AIVLCDGPVLERRHLPRR 388 Query: 477 LLLPELARESAKTPAPRLLTPQQALEK---------FNGDKTAAANYLGISRTTFWRRLK 527 L P + KT L P LE+ G+K AA LGI RTT WR+LK Sbjct: 389 LRSPRALQYETKTRDH--LLPLAELERQYIEDVLSIVGGNKKKAAEVLGIDRTTLWRKLK 446 Query: 528 S 528 + Sbjct: 447 N 447 >UniRef50_A9EN62 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EN62_SORC5 Length = 648 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 142/325 (43%), Positives = 200/325 (61%), Gaps = 32/325 (9%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++G S M +V + + VLIEGETGTGKEL A A+H Y +R ++ Sbjct: 338 DIIGNSDAMRKVIGQLDKVVDTRVTVLIEGETGTGKELIAAAVH--YRSR------RRDK 389 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 FVA NC A+AESLLE+ELFG+++G+FTG+ + GLFEIA GGTLFLDEI E PL LQ Sbjct: 390 LFVAQNCAALAESLLESELFGHKKGSFTGATEE-KKGLFEIADGGTLFLDEITETPLSLQ 448 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 ++LLR L+E E+ VG P V+VR+++AT+ NLE+++ +GRFR DL+YRL + ++LP Sbjct: 449 SKLLRALQEGEIRPVGATSPKHVNVRIVAATNRNLEDEVAKGRFREDLYYRLKVFPIRLP 508 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER DI LA FL+ + P +Q ++ +++ YDWPGN+REL+N ++ Sbjct: 509 PLRERRDDISLLAAHFLERYADEIGKPCGGFSQQAME----LMVAYDWPGNVRELQNEVQ 564 Query: 457 RLALFLSVEP----TPD-LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKF------- 504 R+ + L EP TP+ L+P+ Q+ E A TP L A+EKF Sbjct: 565 RIVIQL--EPGAFGTPELLSPRIRQV---EGLVARAGTPKGSLKEMMDAVEKFFLLEALR 619 Query: 505 --NGDKTAAANYLGISRTTFWRRLK 527 N +KT AA LGI+R ++L+ Sbjct: 620 GHNNNKTNAAKSLGITREGLHKKLR 644 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 145/358 (40%), Positives = 205/358 (57%), Gaps = 38/358 (10%) Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDM----LGQSPQMEQVRQTILLYARSSAAVLIEG 246 D M + + HD N + Y DM +G SP MEQ+R TI A S A+VLI G Sbjct: 238 DRLTMIIFRDAHDYLSNLTPSPYE-SDMQVRLIGHSPSMEQLRSTIGKIANSYASVLITG 296 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 E+G+GKE+ A AIH+ +K+ PFV +NC AI E LLE+ELFGY GAF+G+ Sbjct: 297 ESGSGKEVVAFAIHQS--------SPRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGA 348 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 GR G FE+A+GG+LFLDEIG+MPL LQ +LLRVL+EK +TRVG + + +DVR+I+A Sbjct: 349 DPKGRMGKFELANGGSLFLDEIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAA 408 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 T+ N+ ++ +FR DLFYRL+++ L LP LRER ADI LA+ F + FS Sbjct: 409 TNKNINAMVENNQFREDLFYRLNVVPLVLPSLRERRADIAVLAQYF--------ADEFSV 460 Query: 427 ALRQGLQASETVLLH----YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL 482 + ++ Q +++ + WPGNIRELRN++E + + + + LL Sbjct: 461 SYQRPPQKLPDDVINRLYAWHWPGNIRELRNVIEYIFVMRGEAAGINASHLPPYLLTAAD 520 Query: 483 ARESAKTPAPRLLTP----------QQALEKFNGD---KTAAANYLGISRTTFWRRLK 527 R++ T PR L + +++F K AA LGIS T +R++K Sbjct: 521 GRKTTMTAQPRQLASKGKQAEREAIENVIQRFGSSVEGKKQAATELGISIATLYRKIK 578 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 133/315 (42%), Positives = 195/315 (61%), Gaps = 19/315 (6%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++ +SPQM+QV +T A VLI GE+GTGKE+ A IH+ +K Sbjct: 137 DIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNSL--------RKER 188 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PF+A+NCGAI LLE+ELFGY++GAFTG+ + GL E A GGTLFLDEIGE+PL LQ Sbjct: 189 PFIAINCGAIPSELLESELFGYKKGAFTGAN-TDKKGLIEEAEGGTLFLDEIGELPLDLQ 247 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRVL+E E+ +G ++P +DVR I+AT+ +L++ +++G+FR DL+YR++++ + +P Sbjct: 248 VKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIP 307 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER DI+PLA+ F+ + P R +A E LL+YD+ GN+REL N++E Sbjct: 308 PLRERKEDIIPLAQYFINKFCSRYGIP---KKRLSEKAREK-LLNYDYKGNVRELENIIE 363 Query: 457 RLALFLSVEPTPDL--TPQFMQLLLPELA--RESAKTPAPRLLTPQQALEKFNGDKTAAA 512 R L E D+ T +L EL +E+ K L + LEK + + + A+ Sbjct: 364 RAVLTTEGEEITDIPVTVSKRYILSQELKPFKEAKKEFEESYL--KNLLEKTDFNISKAS 421 Query: 513 NYLGISRTTFWRRLK 527 GI+R +R +K Sbjct: 422 KIAGITRAQIYRMIK 436 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/326 (43%), Positives = 191/326 (58%), Gaps = 27/326 (8%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y +LG S M+ + + +R + LI GE+GTGKEL AQAIH +A + Sbjct: 344 YTFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIH-------NASE- 395 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 + PFVAVNCGAI L+++ELFGY EGAFTGS RGG AG FE+A GGT+FLDEIG+MP Sbjct: 396 RCGGPFVAVNCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDEIGDMP 455 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 Q LLRVL+E EVTRVG + PVDVR+++AT+ NL + G FR DL+YRL++L Sbjct: 456 FDAQASLLRVLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLS 515 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L +PPLR R DI LA+ FL+ +L P +R+ L +L+ + WPGN+REL Sbjct: 516 LSVPPLRMRREDIPTLAQHFLERCARSLRKPVRGIVREALD----ILMAHAWPGNVRELE 571 Query: 453 NMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ-----------AL 501 N +ER A E + + + L L ++AR +A+ PA R AL Sbjct: 572 NTIERAANLAGGEL---IEAEDLPLELAQVARRAAE-PAVRCGAAMDLGSHEMNAIAAAL 627 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLK 527 + G+ AA LG+SR + ++ Sbjct: 628 RECRGNVRLAAKRLGVSRGGLYNKMN 653 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/405 (36%), Positives = 230/405 (56%), Gaps = 43/405 (10%) Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 R Q++ L+ G VV I G G+ I+ + D+ ++ R + Sbjct: 231 RNQVHRLQ--GQNLVVHRMPIWKQGRVIGAVGMLIHEGIS---------DIYKILERFDQ 279 Query: 202 HDATRNAL-----RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 D L + + D+LG+S + + ++ ARS A+VLI GE+G GKE A Sbjct: 280 KDGAVKPLFSKPKKKQIHFEDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFA 339 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH + PF++VNC AI ++LLE+ELFGY EGAFTG+++ G+AG FE Sbjct: 340 RAIHGAGVTNNG--------PFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFE 391 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+ GTLFLDEIG+M L Q ++LRVL+E+E+ R+GG P+PVD R+I+AT+ +L++ ++ Sbjct: 392 LANHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVR 451 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DL++RL ++ +Q+PPLR R DI + E L+ +A ++ L+ Sbjct: 452 EGTFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLR--- 508 Query: 437 TVLLHYDWPGNIRELRNMMERL-ALFLSVE-PTPDLTPQF------MQLLLPELARESAK 488 ++ HY+WPGN+REL N++ERL AL V DL +F + L+P + AK Sbjct: 509 -LMFHYNWPGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQSLPAK 567 Query: 489 TPAPRLLTPQQ-------ALEKFNGDKTAAANYLGISRTTFWRRL 526 A +++ ++ L++ G+K+ AA LGISR T + +L Sbjct: 568 QEAMKVVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKL 612 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 144/330 (43%), Positives = 193/330 (58%), Gaps = 36/330 (10%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 G ++G SPQM+++ + A ++A VL+ GE+GTGKELAA+ IH AR + Sbjct: 315 GRVVGSSPQMKKLHVFLERVAATNATVLVNGESGTGKELAARMIH--------ARSPRAE 366 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 PFVA+NC A+ E+LLE+E FG+E+GAFTG+ G+FE AH GTLFLDEI EM Sbjct: 367 RPFVAINCAAVPENLLESEFFGHEKGAFTGAV-ARHQGVFERAHTGTLFLDEIAEMAPAT 425 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q R+LRVLE + TRVGG + V VDVR+++ATH +L + + G+FR DL YRLS++ +L Sbjct: 426 QARMLRVLENRSFTRVGGTEEVKVDVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKL 485 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 PPLRER DI L F V L + + VL++Y WPGN+RELRN++ Sbjct: 486 PPLRERRGDIPELVRHFCSV----LGDDMGRHVETVADDALAVLVNYRWPGNVRELRNVV 541 Query: 456 ERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPR---LLTPQQ------------- 499 ER AL L P +L L PEL P +++PQ+ Sbjct: 542 ER-ALVLGDGPVLELDD-----LPPELQHAGPHPDQPGASPVVSPQKVLPLAELEQQAIA 595 Query: 500 -ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ALE G+K AA LGI RTT +R+LK+ Sbjct: 596 AALEATGGNKARAAALLGIDRTTLYRKLKN 625 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/326 (40%), Positives = 201/326 (61%), Gaps = 32/326 (9%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 +++ +S QME++ + + A + + +LI GETG GKE+ A+ IH +R + Sbjct: 261 SEIIYRSKQMERLIELVNKVAPTESTILIYGETGVGKEVLAKYIHN--ISRSEG------ 312 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 PF+ +NCGAI E+LLEAELFGYE+GAFTG++ G+ GL E+A GTL LDEI E+PL L Sbjct: 313 -PFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSL 371 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q +LLRVL+EKE RVGG +P+ VDVR+I+A++ +L+E +++G+FR+DL+YRL+++ + + Sbjct: 372 QVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTI 431 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 PPLRERV DI LA FL + + + + +Q + + Y WPGN+REL N++ Sbjct: 432 PPLRERVQDIPILAYHFLNM----YNEKYGHS-KQLTNEVMEIFMKYPWPGNVRELENVI 486 Query: 456 ERLALFLSVEPTPDLTPQFM--QLLLPELARESAKTPAPRLL------------TPQQAL 501 ER+ + + +T + + +LL E S RL+ +QA+ Sbjct: 487 ERIVI---ISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPLKEASALVEYQLIKQAI 543 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLK 527 E+ G AA LG+ ++T R+LK Sbjct: 544 EEC-GSSYKAAEVLGVDQSTIIRKLK 568 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/332 (41%), Positives = 207/332 (62%), Gaps = 22/332 (6%) Query: 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREY 263 A + L+ RY G ++G+S +M+++ + + A+S + VLIEGE+GTGKEL A A+H Sbjct: 151 ALKEELKGRYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHEN- 209 Query: 264 FARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTL 323 ++ PFV +NC A++E +LE+ELFG+ +GAFTG+ + R G FE+A GGTL Sbjct: 210 -------SPRREGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQS-RPGRFELASGGTL 261 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDEIGE+ +Q +LLRVL+E+E RVGG + V VDVRVI+AT+ +L++ M++G FR+D Sbjct: 262 FLDEIGEISPSMQVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKD 321 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 L+YRL ++ + LPPLRER D+ L +SF++ A L + ++ VLL+Y Sbjct: 322 LYYRLRVIPVTLPPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMK----VLLNYH 377 Query: 444 WPGNIRELRNMMERLALF-----LSVEPTP-DLTPQFMQLLLPELA--RESAKTPAPRLL 495 +PGNIREL+N++E AL + + P DL P Q ELA E+ + L Sbjct: 378 YPGNIRELQNIIEHAALLCNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKEL 437 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + A+ + G+ + A L + R+T WRRLK Sbjct: 438 I-RLAMAESGGNVSEVARKLSMGRSTLWRRLK 468 >UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3N9_ACIC5 Length = 484 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/354 (41%), Positives = 203/354 (57%), Gaps = 40/354 (11%) Query: 198 RHNTHDATRNALRTRYVL----GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 RH T D LR + L G+++GQSP+ME++ + + A+++ VLI GE+GTGKE Sbjct: 134 RHRTMDTASRGLREKLRLQGGFGNIVGQSPEMEKLYRILSKVAQTTHPVLILGESGTGKE 193 Query: 254 LAAQAIH-REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 L A+AIH ++A S PF+ V+C +I +L+E+ELFG+ +GAFTG+ R R Sbjct: 194 LVARAIHVHGHYA---------SKPFLPVDCSSIVPTLMESELFGHVKGAFTGATRA-RD 243 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 GL A GGT+FLDEIGEMPL LQ +LLR L+EKEV VG V ++VR+++AT+ NL Sbjct: 244 GLLVAAEGGTVFLDEIGEMPLDLQAKLLRALQEKEVRPVGATHRVKINVRILAATNRNLA 303 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E ++QGRFRRDL+YRL++++L LPPLRER DI LA FL + + R Sbjct: 304 EMVEQGRFRRDLYYRLNVVKLVLPPLRERREDIPLLAAHFLD----RIGREYGKKFRLSA 359 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTP 490 +A ++ Y WPGN+REL N ++R F S E DLT L A + K P Sbjct: 360 EAL-AMISEYPWPGNVRELSNALDRACSFCSGEQVQAGDLTSPVKDFYLQHAAMQR-KRP 417 Query: 491 APRLLTPQ-----------------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 R P+ L + GDK AA L I +TT +R+LK Sbjct: 418 RTRAELPEAEAEVLSLAEIEKRAILSTLAQVKGDKLLAARLLDIGKTTLYRKLK 471 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 137/324 (42%), Positives = 199/324 (61%), Gaps = 24/324 (7%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 RY + +++G+S M ++++T+ A + VLI GE+GTGKEL A ++H Sbjct: 276 RYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLH--------VGS 327 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 + PFV VNC A+ E+LLE+ELFGY EGAFTG+++GG+ G FE A+GGT+FLDEIG+M Sbjct: 328 NRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDM 387 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q +LLRVL+EKE+ R+G ++ V+VRV++AT+ LE+ + FR DL+YRL+++ Sbjct: 388 PLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVV 447 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL-HYDWPGNIRE 450 LQ+P LRER+ D+ L E F LA + F + GL A L +Y+WPGN+RE Sbjct: 448 TLQIPSLRERIDDLKDLVEYF----LAKYNHAFGLNI-TGLSADALELFENYNWPGNVRE 502 Query: 451 LRNMMERLALFLSVEPTPDLT--PQFMQLLLPELARESAKTPAPRLLTPQQ------ALE 502 L N++ER A L D+ P ++Q + R S P LL + AL Sbjct: 503 LENVVER-AFNLVDGHIIDVMHLPPYLQ-KFGKSKRHSINKSLPSLLEQVEKEAIADALS 560 Query: 503 KFNGDKTAAANYLGISRTTFWRRL 526 NG+K AA LGISR ++++ Sbjct: 561 VTNGNKMQAAKILGISRAWLYKKI 584 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/252 (48%), Positives = 174/252 (69%), Gaps = 11/252 (4%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 +N L RY G+++G+SP M + TI+ A ++A VLI+GE+GTGKE+ A++IH F Sbjct: 130 KNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSIH---FN 186 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 H +K P+VAVNC A+AES+LE+ELFG+E+GAFTG+ + G FE+A GGTLFL Sbjct: 187 SH-----RKDAPWVAVNCAALAESILESELFGHEKGAFTGAA-AMKKGRFELADGGTLFL 240 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGE+ LQ +LLRVL+EK RVGG +P+ VD+R+I+AT+ +L+++++ FR DLF Sbjct: 241 DEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLF 300 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL++L +QLPPLRER DI L + FL+ + S + +R+ + Y WP Sbjct: 301 YRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSG--ESRVRKVHPDVHRLFQEYAWP 358 Query: 446 GNIRELRNMMER 457 GN+REL N++ER Sbjct: 359 GNVRELENVIER 370 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 132/324 (40%), Positives = 195/324 (60%), Gaps = 27/324 (8%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++GQ P ++++ +T+ L A S + VLI GE+G GKE+ A+A+H+ +R GK P Sbjct: 145 LIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKALHKS-----GSRSGK---P 196 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 V++NCGAI E LLE+ELFG+ +GAFTG+ R R G FEIA+GGT+FLDEIG+M LQ Sbjct: 197 LVSINCGAIPEELLESELFGHVKGAFTGAVRA-RPGRFEIANGGTIFLDEIGDMSAKLQV 255 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E+ VG Q + VDVRVI+ATH +LE ++ GRFR DL+YRL+++ L LPP Sbjct: 256 KLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPP 315 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DIL L + F + + A + + ++L+Y WPGN+REL+N++ER Sbjct: 316 LRERGDDILLLTDHF----ITRFNQQKKADITGVSDEVKRIILNYQWPGNVRELQNLIER 371 Query: 458 LALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ---------ALEK 503 + + +E P + +L + L + AL++ Sbjct: 372 VTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHLILSALQR 431 Query: 504 FNGDKTAAANYLGISRTTFWRRLK 527 F +K AAN+L ++RTT ++K Sbjct: 432 FQWNKNQAANFLAMNRTTLVEKIK 455 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 133/327 (40%), Positives = 200/327 (61%), Gaps = 36/327 (11%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y ++G+ ++ + S + VLI GE+GTGKE+ AQ+IH H R Sbjct: 317 YTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVFAQSIHN-----HSER-- 369 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 + PFVA+NCGA+ +L+E+ELFGYE+GAFTG++RGG G FE+A GGTLFLDEIGEMP Sbjct: 370 -RDEPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDEIGEMP 428 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L +Q LLRVLEE ++ RVGG++ + VDVR+I+AT+ +L +++++ FR DL+YRL++L Sbjct: 429 LDMQANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNVLP 488 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L LPPLRER +DI L + F+ + L + R + +++Y W GNIREL Sbjct: 489 LILPPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQ----MINYTWRGNIRELE 544 Query: 453 NMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------------Q 499 N++E L + +L F++ + EL+ S ++ +PR+ + + Q Sbjct: 545 NVIENLM------NSGELN--FLERV--ELSSTSNES-SPRVYSLESEPLEDMEKRHIHQ 593 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRL 526 L K+ G+ + AA LGI R T +R++ Sbjct: 594 VLTKYEGNVSQAAEALGIGRNTLYRKM 620 >UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN58_OCEIH Length = 466 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 216/399 (54%), Gaps = 42/399 (10%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 NG+ + I E G G ++ + F + + L + D N LR Sbjct: 79 NGSVMIANRFPIVVDDEIVGAVGTVMFPTPENLRDFKNKIQQLVTDLSY-YRDKVNNELR 137 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 ++Y D++G S + +++ A + ++VLI GE+GTGKEL A AIH Sbjct: 138 SKYTFKDLIGNSQEFVHLKEFAETVAGNDSSVLITGESGTGKELFANAIHNSSL------ 191 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++ HPF+ +NC AI E L E+ELFGY EGAFT +++GG+ GLFEIAH GT+FLDEIGE Sbjct: 192 --REQHPFLPINCSAIPEELFESELFGYSEGAFTDAKKGGKKGLFEIAHNGTIFLDEIGE 249 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 +PL +Q++LLRVL+E+E+ +G + + ++VR+I AT+ NL + ++ G FR DL+YRL++ Sbjct: 250 LPLSMQSKLLRVLQEREIQPIGAQKYISINVRIIVATNRNLLKMVENGEFREDLYYRLNV 309 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL----LHYDWPG 446 + + +PPLR+R DI A L+ L F R + S+ V+ +H+ WPG Sbjct: 310 IHIDIPPLRKRKEDIKQTAYQLLR----KLEHKF---YRSDVMISKEVIKQLEMHH-WPG 361 Query: 447 NIRELRNMMERLALFLSVEPTPDLT--PQFMQLLLPELARESAKTPAPR----------- 493 N+REL N++ER A+ + E T L P +++ ++ E +T R Sbjct: 362 NVRELENVLER-AINMLKENTILLQHLPLYIRDIILEERMNIEQTEKNRGNEIVYLKKMK 420 Query: 494 -------LLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 Q AL G+K AA LGI +T+ + + Sbjct: 421 EVIADAEKQAIQNALSHTKGNKLEAAKLLGIGKTSLYDK 459 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 118/249 (47%), Positives = 168/249 (67%), Gaps = 19/249 (7%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++ +S +M ++ +T++ A + +LI GE+GTGKEL A+ IH H AR K P Sbjct: 383 IISKSTEMRKLLETVVRLAEVDSTILINGESGTGKELIAETIHN-----HSARAKK---P 434 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+ VNCGAI E+L+E+ELFGYE GAFTG+++ G+AG FE+AH GTLFLDEIG++P LQ Sbjct: 435 FIKVNCGAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHEGTLFLDEIGDLPFNLQV 494 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+ KE+ RVGG Q + VD R+++AT+ NL E +Q+ +FR DL+YRL ++ + +PP Sbjct: 495 KLLRVLQSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQFREDLYYRLHVIPVIIPP 554 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV---LLHYDWPGNIRELRNM 454 LR+R DI L F+ A F+ + + S V L+ YDWPGN+REL N+ Sbjct: 555 LRDRKEDIPSLIVHFI--------ALFNRKYKLNKRISPDVVDILMAYDWPGNVRELENL 606 Query: 455 MERLALFLS 463 +ERL + S Sbjct: 607 IERLVVISS 615 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 144/338 (42%), Positives = 207/338 (61%), Gaps = 38/338 (11%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 AL T + G +L SP M + + A S A+VLI GE+GTGKEL A+AIH + Sbjct: 135 ALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIH------Y 188 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 ++R+ K PF+ VNC A+ ESLLE+ELFG+E+GAFTG++ R GLFE A+ GTL LDE Sbjct: 189 NSRRAKG--PFIKVNCAALPESLLESELFGHEKGAFTGAQ-TLRQGLFERANEGTLLLDE 245 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IGEMPL LQ +LLR+L+E+E R+GGHQ + VD+R+I+AT+ +L+ +++G FR DLFYR Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL----QASETVLLHYD 443 L+++ L LPPLR+R DI LA FL+ FS+ ++ + + ++L + Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQ--------KFSSENQRDIIDIDPMAMSLLTAWS 357 Query: 444 WPGNIRELRNMMERLALFLSVEP---TPDLTPQFMQLLL-----------PELARESAKT 489 WPGNIREL N++ER A+ ++ P + DL PQ Q + +E K Sbjct: 358 WPGNIRELSNVIER-AVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKR 416 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R++ + LE+ G++T A LGISR +L+ Sbjct: 417 VEKRIIM--EVLEQQEGNRTRTALMLGISRRALMYKLQ 452 >UniRef50_Q183V3 Putative sigma-54 dependent regulatory protein n=8 Tax=Bacteria RepID=Q183V3_CLOD6 Length = 638 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 193/328 (58%), Gaps = 22/328 (6%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 L +Y D++ S + + + YA ++I GE+G GKEL Q+IH Y R Sbjct: 319 GLSAKYTFDDIIHASKKTKDCIELAKKYACYDTPMIITGESGVGKELFCQSIHN-YSKRK 377 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 +A PFVAVNC AI SL+E+E FGYEEG+FTG+R+ G+AG+FE+AH GT+FLDE Sbjct: 378 NA-------PFVAVNCAAIPPSLIESEFFGYEEGSFTGARKKGKAGVFELAHEGTIFLDE 430 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 I E+PL LQ RLLRVL+EK+V R+GG + +P+DV++I A++ +L+ M+ G FR+DL++R Sbjct: 431 ISEIPLELQGRLLRVLQEKQVMRIGGDKVIPIDVKIICASNKDLKNMMRNGLFRQDLYFR 490 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 ++IL L LP L+ER DI+ L+E F + S+ ++ + LL ++ GN Sbjct: 491 INILTLYLPSLKERKEDIIKLSEFF----IHKYSSKYNKTPLIITPNIKKALLEREYEGN 546 Query: 448 IRELRNMMERLALFLSVEPT--PDLTPQFMQLLLP------ELARESAKTPAPRLLTPQQ 499 IREL MMER + S + L+ ++ ++ E + KT + + + Sbjct: 547 IRELEGMMERAVIVESFDSILLEKLSNEYTNNIVDKDNSDFECSNLDLKTLEKKYI--YK 604 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLK 527 + N + T L I+R+T WR+LK Sbjct: 605 IYNENNRNTTKTCEILKITRSTLWRKLK 632 >UniRef50_B6WRJ0 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRJ0_9DELT Length = 432 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 208/366 (56%), Gaps = 48/366 (13%) Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 S L+ +R+ L H + L+ Y + ++G+ P M QV L AR LI Sbjct: 74 LSQELEKSRLRL-HEENRQVVETLQKEYNVRRIIGRCPAMRQVVAQALAIARRPINTLIL 132 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 G +GTGKE+ A+ IH + R DA PFVAVNC AI +SL E+E+FG E+G TG Sbjct: 133 GPSGTGKEIFAKTIHY-HSPRRDA-------PFVAVNCTAIPDSLFESEMFGIEKGVATG 184 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 R GL E A GGTLFLDE+ +M LP Q +LLRVLEE+EV RVG +PVPVD++VI+ Sbjct: 185 V--SARRGLVEEASGGTLFLDELADMSLPNQAKLLRVLEEREVLRVGSARPVPVDIKVIA 242 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL-----KVSLAAL 420 AT+ +L + + QGRFR+DL+YRL++ L LPPL ER DIL LA L + +AL Sbjct: 243 ATNVDLRQAVAQGRFRQDLYYRLNVAELTLPPLHERGDDILLLARHLLAQHAHNMERSAL 302 Query: 421 S-APFSAALRQGLQASETVLLHYDWPGNIRELRNMMER---LALFLSVEPTPDLTPQFMQ 476 S AP A++ LL YDWPGN+REL N MER L + + P+ DL+P+ + Sbjct: 303 SLAP----------ATQQCLLAYDWPGNVRELSNEMERAAALTVDTVIRPS-DLSPKLLA 351 Query: 477 LL----------------LPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 L LP++ A RLL Q+AL+ G+K+ AA LGI+R Sbjct: 352 ALARHGGIKTADTSPREPLPDIRTTFNLEQAERLLV-QRALDACQGNKSRAAELLGITRE 410 Query: 521 TFWRRL 526 ++L Sbjct: 411 GLRKKL 416 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 134/322 (41%), Positives = 197/322 (61%), Gaps = 35/322 (10%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++G+S ++ YARS ++VLI GETGTGKEL AQ+IH E + Sbjct: 334 DIIGESRVLKDTIHLARKYARSQSSVLITGETGTGKELFAQSIHNE--------SSRADE 385 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PFVA+NC A+ +SLLE+ELFGY +GAFTG+ + G+ G+FE+AH GT+FLDEIGEM L +Q Sbjct: 386 PFVAINCAALPQSLLESELFGYVKGAFTGANKEGKMGIFEMAHRGTVFLDEIGEMDLNVQ 445 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRVL+E+EV R+G + +PVD+R+ISAT+ NL E ++Q FR DL YRL++L L LP Sbjct: 446 AKLLRVLQEREVCRLGDDRIIPVDIRIISATNKNLYELVEQKLFREDLLYRLNVLELNLP 505 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLR R D+ L +++K + P + L + +L PGN+R+L N++E Sbjct: 506 PLRSRTGDVPLLVNAYMKRQ----NRPVTF-----LPDAMELLSREPCPGNVRQLFNLLE 556 Query: 457 RLALFLSVEPTPDLTPQFMQLLLPELARESAKT-PAPRLLTP----------QQALEKFN 505 R+ +++ +++ +++ + S KT P P LL + AL K + Sbjct: 557 RI---VTLSDGREISASWLKNIFS----FSGKTEPLPGLLEDTVGNCEQTEIEHALRKNH 609 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G++ A LGIS T WR++K Sbjct: 610 GNRAKTAKDLGISTATLWRKMK 631 >UniRef50_UPI000197326E probable transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197326E Length = 573 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 135/321 (42%), Positives = 210/321 (65%), Gaps = 25/321 (7%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G S + +++ I A S +LI GETGTGKEL A++IH + +R+ K +P Sbjct: 263 LIGSSKEFSHIQKMIKRVADSPTPILITGETGTGKELVARSIHEQ------SRRAK--YP 314 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FVA+NC +I E+L E+ELFGYEEG+FTG+++GG+ G E+A GGTLFLDE+GEMPL +Q Sbjct: 315 FVAINCSSIPENLFESELFGYEEGSFTGAKKGGKMGKIELAQGGTLFLDELGEMPLSVQP 374 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E E+ RVG + + +D+R+++AT+ +L + +++G+FR DLFYR+S++ ++LPP Sbjct: 375 KLLRVLQEYELERVGSTKKIHLDIRIVAATNRDLADMIKEGKFREDLFYRISVINIKLPP 434 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI+P+++++L++ + +S P LR+ +E + L+Y WPGNIREL+N++E Sbjct: 435 LRERKDDIIPISKNYLELLHSRMSTP----LRKISSEAEKLFLNYPWPGNIRELQNVIEY 490 Query: 458 LALFL---SVEPTPDLTPQFMQLLLPELARE----SAKTPAPRLLTPQQALEKF----NG 506 A ++ P+ DL + L E + + SA P + Q+ L + G Sbjct: 491 AANLCDGDTLNPS-DLPEHLISRLNLEFSEKQEPRSAHLPDSQEKQIQELLATYGHTLEG 549 Query: 507 DKTAAANYLGISRTTFWRRLK 527 K AA LGIS T +R+L Sbjct: 550 KKRIAAA-LGISLRTLYRKLN 569 >UniRef50_Q6FC38 Putative sigma-54 dependent transcriptional regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FC38_ACIAD Length = 358 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 162/235 (68%), Gaps = 14/235 (5%) Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A SSA+V+I+GE+GTGKEL A+ IH + +K+ PF+AVNCGA+ E+L E+EL Sbjct: 47 APSSASVIIQGESGTGKELIAREIH--------LKSDRKNKPFLAVNCGALVETLAESEL 98 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGYE GAFTG+ + RAG+FE A GGTLFLDE+GE+PL LQ +LLRVL+EKEV RVGG + Sbjct: 99 FGYEAGAFTGANKT-RAGIFETADGGTLFLDEVGELPLTLQVKLLRVLQEKEVVRVGGRK 157 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 P+P++VR++S TH +L + + + +FR DL+YRL+++ L + PLRER DILPL + F Sbjct: 158 PIPINVRILSGTHVDLRKAVAENKFRLDLYYRLNVVVLNILPLRERKGDILPLVDFF--- 214 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDL 470 L++ S + LL+Y WPGNIREL N + AL +S T DL Sbjct: 215 -LSSYSQKLITTKPNISDRARNALLNYSWPGNIRELENNI-HYALLVSGGKTIDL 267 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 131/341 (38%), Positives = 207/341 (60%), Gaps = 37/341 (10%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 A ++ ++G SPQ +++ +A ++ +LI+GE+GTGK++ AQAIH E Sbjct: 321 AAMVKFTFDTIIGSSPQSMKLKSMAKKFAHFNSNILIQGESGTGKDVYAQAIHFE----- 375 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 + + P++AVNC AI ++L+ +ELFGYE GAFTG+ R G+ G E+A+GGTLFLDE Sbjct: 376 ----NRPNGPYIAVNCAAIPQNLIASELFGYEGGAFTGAERQGKPGKIELANGGTLFLDE 431 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IG+MPL LQ LLRVLE+K + VGG + +PVD R+I+AT+ NL + ++ +FR DL+YR Sbjct: 432 IGDMPLELQAVLLRVLEDKMIMHVGGSRYIPVDFRLITATNKNLLDLVKNNQFREDLYYR 491 Query: 388 LSILRLQLPPLRERVADILPLAESFLKV--SLAALSAPFSAALRQGLQASETVLLHYDWP 445 +S+ +L +PPLRER +DI+ L E F+++ S + P + +++ +LL Y+WP Sbjct: 492 ISVFKLSVPPLRERGSDIVQLIEHFIRIYSSNQGIDEPILS------NSAKYLLLQYNWP 545 Query: 446 GNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAK---TPAPRLL----T 496 GN+R+L+N + A+ +S E P+ P+ + P A+ P+P + T Sbjct: 546 GNVRQLQNTIS-YAVCMSNEGIIRPENLPEEILSYQPPSGLTLAQPEPEPSPNEIILDNT 604 Query: 497 PQ----------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 P +AL + N AA LG+S++T +R++K Sbjct: 605 PSMKEIEKKAIMKALHESNNHIRGAAKILGLSKSTLYRKIK 645 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 133/320 (41%), Positives = 188/320 (58%), Gaps = 40/320 (12%) Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A++ A VLI GE+G GKEL AQAIH+ +R+ +K PF+A+NCGAI +L E+EL Sbjct: 229 AQTDATVLIYGESGVGKELFAQAIHQA------SRRHEK--PFIAINCGAIPAALFESEL 280 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGY+ GAFTG+ + G+ G E+AHGGTLFLDEIGE+PL LQ +LLR L+E++ RVGG + Sbjct: 281 FGYQGGAFTGAEKKGKPGKLELAHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTE 340 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 P+ V+ R+++AT+ LE+ + GRFR DL+YRL++ L++PPLRER D+ L + F+ Sbjct: 341 PITVNTRIVAATNRQLEQMVADGRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHE 400 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS------------ 463 A + +QA L Y WPGNIR+LRN++ERL++ Sbjct: 401 YSVAHDQSVPRISPEVMQA----LFEYTWPGNIRQLRNVIERLSILQENGVILPEHLPSV 456 Query: 464 ----VEPT------------PDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGD 507 EPT T ++ P +A +PA ALE+ G+ Sbjct: 457 IRSHTEPTHVSLHTPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAALERTYGN 516 Query: 508 KTAAANYLGISRTTFWRRLK 527 K AAA LG+SR T + ++K Sbjct: 517 KKAAAELLGVSRGTLYNKMK 536 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 135/328 (41%), Positives = 201/328 (61%), Gaps = 30/328 (9%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y DM+G+S +++V++ A S + VLI GE+GTGKEL AQAIH + Sbjct: 149 KYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNASY------- 201 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 + PFV +NC A+ E+LLEAELFGY EGAFTG+++GG+ G FE+A GGT+FLDEIGE+ Sbjct: 202 -RSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGEL 260 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q++LL VL+E+E+ RVGG + V VD RVI+AT+ NLE+ +++G FR DL+YRL+++ Sbjct: 261 PLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNVI 320 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 L++P LRER DI L F L+ ++ + + + VL + WPGNIREL Sbjct: 321 SLKIPSLRERQDDIPLLVNYFTD----KLNNKLKCSVERFTEEAMLVLSKHYWPGNIREL 376 Query: 452 RNMMERLALF------------LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ 499 +N +ER+ + S++ Q +L L E+ ++ K R++ Sbjct: 377 QNTLERVFILSDDNIISVNHLPFSIKMRKGNIIQSKRLTLDEMIDQTEK----RIIL--D 430 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLK 527 L D+ AAA LGI ++ +R++K Sbjct: 431 TLSNVKDDRIAAAELLGIHLSSLYRKMK 458 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 139/321 (43%), Positives = 197/321 (61%), Gaps = 34/321 (10%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M+G+SP M+Q+ I + A S A VLI G++GTGKEL A+A+H A + P Sbjct: 141 MVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALH--------ASSARSDKP 192 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGS--RRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 V +NC A+ ESLLE+ELFG+E+GAFTG+ RR GR F A GGTLFLDEIG++ + Sbjct: 193 LVTLNCAALNESLLESELFGHEKGAFTGADKRREGR---FVEADGGTLFLDEIGDISPLM 249 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q RLLR ++E+EV RVG +Q + VDVR+I+ATH +L ++ GRFR+DL+YRL+++ ++ Sbjct: 250 QVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIET 309 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA----SETVLLHYDWPGNIREL 451 P LR+R DI LAE FL+ F+A R+ ++ + +L+HY WPGNIREL Sbjct: 310 PSLRQRREDIPLLAEHFLQ--------RFAARNRKAVKGFTPQAMDLLIHYAWPGNIREL 361 Query: 452 RNMMERLALFLSVEPTPD------LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN 505 N +ER + L+ E + + Q M L+ + + + +L ALEK Sbjct: 362 ENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILA---ALEKTG 418 Query: 506 GDKTAAANYLGISRTTFWRRL 526 G+KT AA LGI+R T +L Sbjct: 419 GNKTEAARQLGITRKTLLAKL 439 >UniRef50_C6JIT1 Sigma54 specific transcriptional regulator (Fragment) n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JIT1_FUSVA Length = 567 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 132/330 (40%), Positives = 194/330 (58%), Gaps = 36/330 (10%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 ++ D++ E++++ YA + +LI GE+GTGKEL AQ+IH Sbjct: 258 KHTWKDIVTCDKNFEEIKKIARHYAGTENTILITGESGTGKELFAQSIHN--------GS 309 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 +K+ PFVA NC I+E+L+E+ELFGYEEGAFTG+RR G+ GLFE+AH GT+FLDEI E+ Sbjct: 310 KRKNEPFVAFNCANISENLIESELFGYEEGAFTGARRRGKKGLFELAHKGTIFLDEISEI 369 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 P LQ + LRVL+EK RVGG + + VDVRV++AT+ NL +G+FR DLFYRL++L Sbjct: 370 PYHLQNKFLRVLQEKCFRRVGGEETIYVDVRVVAATNKNLSLLCDEGKFRTDLFYRLNVL 429 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 ++ PLR+R DI + + L+ L L+ + L+ L Y +PGN+REL Sbjct: 430 EIETIPLRKRKEDIFIIGKHILEKELLGLNLFEAERFTNILEK----LSEYPFPGNVREL 485 Query: 452 RNMMERLALF-----LSVEPTPDLTP---------QFMQLLLPELARESAKTPAPRLLTP 497 N+++R+ + LS + L P +F+ + L E+ R +++T Sbjct: 486 ENIVKRVVVLKINLKLSDDKILTLLPLGKIEKKKNEFLNMTLREIER--------KIIT- 536 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE+ + +KT A LGI R T R LK Sbjct: 537 -EVLEEEDNNKTKTAIRLGIDRGTLNRILK 565 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 233 bits (595), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 131/317 (41%), Positives = 194/317 (61%), Gaps = 23/317 (7%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++ +S +ME VR + + +A+ A +LI GE+G GKE+ A ++R + R+G P Sbjct: 238 LIFRSRKMEVVRDSAIKFAKVDAPLLITGESGVGKEVIADLVYR-----YSPRKG---LP 289 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+ +NCGAI E+LLE+ELFGYE GAFTG+++ GR GLFE+A+GGT+ LDEIGE+PL LQ Sbjct: 290 FLKINCGAIPETLLESELFGYEGGAFTGAKKEGRTGLFEMANGGTVMLDEIGELPLALQV 349 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLR +++KE RVGG + V VDVR+I+AT+ +L+E + Q +FR DLFYRL++LR+ +PP Sbjct: 350 KLLRFVQQKEFYRVGGKKVVKVDVRLIAATNRDLQEMVNQKQFRSDLFYRLNVLRIHIPP 409 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI+PL L + ++ + R +Y W GN+REL N++ER Sbjct: 410 LRERPEDIIPLVNYLLD----KYNKKYNVSKRISGDVYHA-FTNYTWVGNVRELENLIER 464 Query: 458 LALFLSV-EPTPDLTPQFMQLLL-----PELARESAKTPAPRLLTPQ---QALEKFNGDK 508 L + E T D P M+ + + RE A + +ALEK+ + Sbjct: 465 LVVICDRDEITLDYLPDEMKKAIYVWRDDSIGREQTYKEAKEEFEREFFCRALEKYKSSR 524 Query: 509 TAAANYLGISRTTFWRR 525 AA LG+ +T ++ Sbjct: 525 QAAEK-LGLDHSTIVKK 540 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 142/345 (41%), Positives = 206/345 (59%), Gaps = 25/345 (7%) Query: 192 MTRMSLRHNTHDATRNALRTRYV-LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 + + SLR +A R+ +R+R D++G+SPQ++ + I A + A VLI GE+GT Sbjct: 119 LEKRSLRQEA-EALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGT 177 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS--RR 308 GKEL AQA+H+E +K PF+ V+C A++E+LLE+ELFG+E+G+FTG+ R+ Sbjct: 178 GKELIAQALHQE--------SPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARK 229 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GR FE+A GGTLFLDEIGE+ +Q +LLRVL+++E RVGG Q + VDVR+++ATH Sbjct: 230 EGR---FELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATH 286 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 +L +++ GRFR DL+YRL+++ + LPPLR+R +D+ L FL+ S + + Sbjct: 287 RDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLE----KYSDSYGKQV 342 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQLLLPELARESA 487 R + LL +DWPGNIREL N +ER + L E + D P ++ P A Sbjct: 343 RGLAPGTLQALLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGA 402 Query: 488 KTPAPRLLTPQ-----QALEKFNGDKTAAANYLGISRTTFWRRLK 527 P L + + LE G + AA LGIS RLK Sbjct: 403 LIPGATLAAIEREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLK 447 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/330 (41%), Positives = 200/330 (60%), Gaps = 35/330 (10%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 R R+ ++L Q+P M+++ + A SSA VLI GE+GTGKEL AQA+H A H Sbjct: 234 RHRFSFENILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFAQALHE---ASH-- 288 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 ++ PFVA+NCGAI +L+E+ELFGYEEGAF+G+ + G+ G FE+A GTLFLDEIG Sbjct: 289 ---RRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLFLDEIG 345 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 E+P+ Q +LLRVLEE+++ R+GG P+ VD R++ AT+ +L G+FR DLFYR++ Sbjct: 346 ELPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDLFYRIN 405 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLA--ALSAP-FSAALRQGLQASETVLLHYDWPG 446 +++PPLR+R+ DI LAE FL + L+ P FS + + VL+ Y+WPG Sbjct: 406 EFPIEIPPLRQRLDDIPLLAEHFLTKACQQEGLAMPKFS-------EEAIKVLMSYEWPG 458 Query: 447 NIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------- 498 N+RELR+++ ++A +T + LP+ + K L Q Sbjct: 459 NVRELRSLIRQMAWKFQ-----GMTVELHN--LPQAFHKERKVTMSGTLEEQLARAERNA 511 Query: 499 --QALEKFNGDKTAAANYLGISRTTFWRRL 526 AL+ NG++ AA LGI RT ++++ Sbjct: 512 IETALQTSNGNRALAARMLGIHRTALYKKM 541 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 138/319 (43%), Positives = 195/319 (61%), Gaps = 30/319 (9%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M+G SP M+ + I + A S A VLI G++GTGKEL A+A+H A + P Sbjct: 141 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALH--------ACSARSDKP 192 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGS--RRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 V +NC A+ ESLLE+ELFG+E+GAFTG+ RR GR F A GGTLFLDEIG++ + Sbjct: 193 LVTLNCAALNESLLESELFGHEKGAFTGADKRREGR---FVEADGGTLFLDEIGDISPLM 249 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q RLLR ++E+EV RVG +Q + VDV +I+ATH +L E++ GRFR+DL+YRL+++ +++ Sbjct: 250 QVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEM 309 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA----SETVLLHYDWPGNIREL 451 P LR+R DI LA+ FL+ F+ R+ ++ + +L+HYDWPGNIREL Sbjct: 310 PSLRQRREDIPLLADHFLR--------RFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 Query: 452 RNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ----ALEKFNGD 507 N +ER + L+ E + P A SA+ P + ++ ALEK G+ Sbjct: 362 ENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQ-PLVDVEKEVILAALEKTGGN 420 Query: 508 KTAAANYLGISRTTFWRRL 526 KT AA LGI+R T +L Sbjct: 421 KTEAARQLGITRKTLLAKL 439 >UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q214B6_RHOPB Length = 628 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/343 (39%), Positives = 201/343 (58%), Gaps = 38/343 (11%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 H A + R R+ D++G+ + + +A S ++VLI GETGTGKEL AQ+IH Sbjct: 303 HIAKGHVARIRF--EDIVGKGEAIHHTIERAKKFALSESSVLIIGETGTGKELFAQSIHN 360 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 H R K PFVA+NC A+ ++LE+ELFGY GAFTG++ G++G+FE+AHGG Sbjct: 361 -----HSRRHSK---PFVAINCAALPNNVLESELFGYVRGAFTGAKDAGKSGIFELAHGG 412 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 ++FLDEIGE+P+ +Q +LLRV++E++V R+G + VPVDVRVISAT+ N++ +++ GRFR Sbjct: 413 SVFLDEIGEIPIEMQAKLLRVIQERQVQRIGDDKLVPVDVRVISATNKNVDNEVKLGRFR 472 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL++RL+ L L+LPPLRER D+ L F+ + F+ ++ L Sbjct: 473 EDLYFRLNTLELELPPLRERTGDVPTLIRHFMGRA-GRREVSFTPDAQRFLNV------- 524 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA---PRLLTPQ 498 Y WPGN+R+L N +ERL + P ++ + LL A S + A P L P Sbjct: 525 YSWPGNVRQLGNFIERLNVLYD---QPSMSLSEVCDLLGTAAGASVQGAAQQRPSTLAPD 581 Query: 499 --------------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL+ G++ A+ LGIS +T R+ K Sbjct: 582 DENVLEKMERDLIAEALDITTGNREKASIILGISPSTLGRKKK 624 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 139/361 (38%), Positives = 211/361 (58%), Gaps = 29/361 (8%) Query: 172 TGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQT 231 +G I + A +RQA DAL R A ++L RY D++G+SP + + ++ Sbjct: 313 SGNTIGAVAVLRQA-RDALKSRR---------AQHSSL-PRYSFDDIIGESPAISEAKEW 361 Query: 232 ILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 291 + A S + +L+ GE+GTGKEL AQ+IH R+ PF+A+NC AI E+L+ Sbjct: 362 ARIAANSGSTILLSGESGTGKELFAQSIHNVSSFRNG--------PFIAINCAAIPEALV 413 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+ELFGY EG FTG+++GG G FE A GTLFLDEIG+MPL +Q ++LRV++EK+++RV Sbjct: 414 ESELFGYAEGTFTGAKKGGSPGKFESADRGTLFLDEIGDMPLTVQAKVLRVIQEKKISRV 473 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 G + V++R+I++TH NL ++ G FR DLFYRL++L +Q+PPLR+R DI PL Sbjct: 474 GSSEERQVEIRIIASTHKNLRTEVLNGNFREDLFYRLNVLVVQVPPLRDRGGDI-PLVAC 532 Query: 412 FLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLT 471 L + +SA G A L ++WPGN+REL N +E+ A+ S + L Sbjct: 533 HL---VEKISARMGKQRIVGEDAFWGKLASHNWPGNVRELENAIEQ-AVVRSDDSGVLLA 588 Query: 472 PQFMQLLLPELARESAKTPAPRLLTPQQ-----ALEKFNGDKTAAANYLGISRTTFWRRL 526 ++ +A + L ++ AL ++G+ AA+ LGI R T +R++ Sbjct: 589 RHLTFDVVESVAPTGGRAEIVSLTEMEKQAITAALHLYDGNIQKAASKLGIGRNTLYRKI 648 Query: 527 K 527 + Sbjct: 649 R 649 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/400 (36%), Positives = 227/400 (56%), Gaps = 31/400 (7%) Query: 139 EDARGQINELKANGTEAVV-GAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 +D + ++ E+ NG + V ++ D G+ + I+ + A ++ ++ L Sbjct: 188 DDIKTEVVEI--NGRQVVAFKYPIVKDYKLYGGVIKV-IFQEVSDLLALAEKVNQLNSEL 244 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + ++ T+ + ++ ++G P + ++++ I A + VLI GE+GTGKEL A Sbjct: 245 SYYKNELTKYTSK-QFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAH 303 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 A+H E R G F+ VNC AI E+L EAELFGY EGAFTG+++GG+ G FE+ Sbjct: 304 ALHVE-----SGRPG----SFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFEL 354 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+ GT+FLDEIG+MPL +Q +LLRVL+EKEV R+G + ++VRVI+AT+ NLEE +++ Sbjct: 355 ANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIKK 414 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 +FR DL+YRL+++ L +P LRER+ D LPL +K + + + + Sbjct: 415 KKFREDLYYRLNVISLYVPALRERIED-LPL---LIKYFIEKFNKEYGTNVTGISPEVMD 470 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP 497 + ++Y WPGNIREL N++ER F VE +L E + + + P + LT Sbjct: 471 IFMNYSWPGNIRELENVLER--CFNLVEGKVIEKKYLPPYILGEELK-NKEFPLGQSLTN 527 Query: 498 ----------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + AL K G+K+ AAN LGISR +RLK Sbjct: 528 LLEAYEKELIKAALLKAKGNKSKAANLLGISRQWLHKRLK 567 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 135/317 (42%), Positives = 195/317 (61%), Gaps = 20/317 (6%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 + LG+ + +++++ + + ++VL+ GETGTGKE+ A+ IHR RQG Sbjct: 346 EFLGKGEEWKKIKELVSRTSPFPSSVLLLGETGTGKEVLARTIHR-----LSQRQGN--- 397 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 FVAVNCGAI LL++ELFGY GAFTG+R GG G FE AH GTLFLDEIGEMP+ +Q Sbjct: 398 -FVAVNCGAIPRELLQSELFGYVGGAFTGARSGGSVGKFEHAHKGTLFLDEIGEMPMDMQ 456 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 LLR L+E+ VT++ + P PVDVR+I+AT+ N+ + + QG FR DL+YRL+++ + +P Sbjct: 457 VSLLRFLQERTVTKINSNYPKPVDVRIIAATNKNMYDLVGQGLFREDLYYRLNVIEINIP 516 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER DI LA+ F +A L F+ ++ +A+ L + WPGN+REL+N+ME Sbjct: 517 PLRERKEDIPMLAQFF----VAELCKQFNILPKKIDEATMETLDRHVWPGNVRELKNVME 572 Query: 457 RLALFLSVEP-TPDLTP-QFMQLLLPELAR--ESAKTPAPRLLTPQ---QALEKFNGDKT 509 + + + + TPD+ P Q Q L P + ++ T A L LE+ G+ Sbjct: 573 KAVVMTAGDTITPDVLPKQIFQTLEPPSPQPADNPGTEAEELSEKDYILHMLEQHGGNVA 632 Query: 510 AAANYLGISRTTFWRRL 526 A L I+R T +RRL Sbjct: 633 QTAKALNIARNTLYRRL 649 >UniRef50_A5TW11 Transcriptional regulator n=4 Tax=Fusobacterium RepID=A5TW11_FUSNP Length = 571 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 131/319 (41%), Positives = 185/319 (57%), Gaps = 23/319 (7%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 +L +SPQM+ + + AR+ +VLI GE+GTGKE+ A+ IH + P Sbjct: 265 ILLESPQMQDIYSHVSKVARNDTSVLITGESGTGKEIIAKQIH--------DLSSYSNGP 316 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+ VNCGAI ESL+E+ELFGY +GAFTG+ G+ G FE A+ GT+FLDEIGEMPL +Q Sbjct: 317 FITVNCGAIPESLMESELFGYTKGAFTGADPKGKIGFFEKANNGTIFLDEIGEMPLQIQV 376 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 ++LRVL++K++T +G ++VR+I+AT+ NLEE++++ FR+DLFYRLS+ + +PP Sbjct: 377 KILRVLQDKKITPIGSRTEKQINVRIIAATNKNLEEEVEKRNFRQDLFYRLSVFPIDIPP 436 Query: 398 LRERVADILPLAESFLK---VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LRER DI L E F+K +S S + Q L Y WPGNIREL+N Sbjct: 437 LRERKKDIKTLVEFFIKKYYISFQKEQKEISTDVYQH-------FLEYSWPGNIRELKNT 489 Query: 455 MER-LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAA-- 511 +E + + E T DL + L + E KT L K G+ + A Sbjct: 490 IEYCMNMIEENEKTIDLKHLPPKFLGNKEKDEKIKTLKELEKEAISNLLKIYGNSSEAKK 549 Query: 512 --ANYLGISRTTFWRRLKS 528 A LG+ T +R+L S Sbjct: 550 IIAKSLGVGIATLYRKLSS 568 >UniRef50_Q188I7 Sigma-54-dependent transcriptional regulator n=4 Tax=Clostridium difficile RepID=Q188I7_CLOD6 Length = 547 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 42/333 (12%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 + + QS M+ +++ + A S +++ I GE+G GKE+ A+ I++ Y +R D Sbjct: 231 EYISQSKIMDNIKKVVKRAAASDSSIFINGESGVGKEIIARTIYK-YSSRRDK------- 282 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PF+A+NCGAI LLE+E FGYEEG+FTG+++ G+ GLFE A+GGT+FLDEIGE+P+ +Q Sbjct: 283 PFIAINCGAIPNELLESEFFGYEEGSFTGAKKKGKKGLFEEANGGTIFLDEIGELPMQMQ 342 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRV++E +TR+GG +P+ +DVR ISAT+ + E+ +FR+DL+YRLS++ +++P Sbjct: 343 KKLLRVIQENTITRIGGSKPIKIDVRYISATNISHEDLRNNLKFRQDLYYRLSVIPVKIP 402 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV---LLHYDWPGNIRELRN 453 PLRER DI+PL FLK+ ++ + ++ S V L Y WPGNIREL+N Sbjct: 403 PLRERKEDIVPLVNYFLKL--------YNEKYNREVEVSPKVIELLEEYSWPGNIRELKN 454 Query: 454 MMERLALF------------------LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL 495 ++ER + + T DL+P + ++ ++ K ++ Sbjct: 455 IIERFVVLSAKNVIGEDEFNMLINLDMIDNETDDLSPIVVNGIMN--LNDAYKIVDQIMI 512 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + +A+ K+ G T AA +GI +T R++KS Sbjct: 513 S--KAINKY-GSITKAAEVIGIYPSTIHRKIKS 542 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/313 (40%), Positives = 192/313 (61%), Gaps = 31/313 (9%) Query: 174 IFIYSAATVRQAFSDALDMTRM-SLRHNTHDATRNA---------LRTRYVLGDMLGQSP 223 IF + VR ++ D+T + +L+ + D + A LR++ + D++ +SP Sbjct: 213 IFDENGEIVR-VVTNVRDITELLNLKQDLEDKAKQAARYQNELAQLRSKSIYDDIVVESP 271 Query: 224 QMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 283 QM + + + VLI GE+G GKE+ Q + R ++ PF+ VNC Sbjct: 272 QMRHIFDLATWVGQVDSTVLILGESGVGKEVVTQIVVRS--------SERRDEPFIKVNC 323 Query: 284 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVL 343 GAI E+LLE+ELFGYE+G+FTG+ + G+ G+FE+AH GT+ LDE+ E+PL LQ +LLR + Sbjct: 324 GAIPENLLESELFGYEKGSFTGADKKGKPGMFELAHKGTILLDEVAEIPLNLQVKLLRAI 383 Query: 344 EEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVA 403 +E+E+ RVGG +P+ +DVR+I+AT+ +L+E ++ G+FR DLFYRL+++ + +PPLRER Sbjct: 384 QEQEIIRVGGTKPLKLDVRIIAATNRDLDELVRTGQFREDLFYRLNVIPITVPPLRERRE 443 Query: 404 DILPLAESFLKVSLAALSAPFSAALR-QGLQASETV--LLHYDWPGNIRELRNMMERL-A 459 DI L E FL ++ R A ETV L+ YDWPGN+REL+N++ER+ Sbjct: 444 DIPALIELFL--------CKYNEKYRLNKTLAPETVERLVSYDWPGNVRELQNIVERMVV 495 Query: 460 LFLSVEPTPDLTP 472 L E PD P Sbjct: 496 LSRDDEVGPDALP 508 >UniRef50_O31551 Acetoin dehydrogenase operon transcriptional activator acoR n=4 Tax=Bacillus RepID=ACOR_BACSU Length = 605 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 136/327 (41%), Positives = 192/327 (58%), Gaps = 31/327 (9%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 + ++GQS + + + + A + A+V + GETGTGKE+AA+A+H RH Sbjct: 290 FRFNGVIGQSGRSQAMLMHLERAAATDASVCLSGETGTGKEVAARALHENSERRHG---- 345 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 PFVAVNCGAI L+E+ELFGY EGAFTG++R G G F+ A+ GTLFLDEIGE+ Sbjct: 346 ----PFVAVNCGAIPSDLIESELFGYAEGAFTGAKRNGYKGAFQKANQGTLFLDEIGEIS 401 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 +Q LLRVL+E+++T +GG + +PVD+RVI+ATHC+L E + G+ R DLFYRL + Sbjct: 402 HSMQVALLRVLQERKITPIGGTKEIPVDIRVIAATHCDLRELAENGKIREDLFYRLHVYP 461 Query: 393 LQLPPLRERVADILPLAESFLKVSL--AALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 ++LPPLR+R DI L E + + + L + F L+Q + WPGNIRE Sbjct: 462 IELPPLRDRTEDIPDLFEYYKQKNHWPGDLPSDFCNVLKQ-----------WKWPGNIRE 510 Query: 451 LRNMMERLAL-FLSVEPTPDLTPQFMQLL-LPELARESAKTPAPRLLTPQQ--------A 500 L N+ ERL++ F + P ++ LP + E A L +Q A Sbjct: 511 LFNVFERLSIRFPDGRLRDESLPALLEAAGLPASSAEKKPAAAGVLTFREQIQKDMMIKA 570 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 LE G+ + AA GI R+TF++RLK Sbjct: 571 LESAKGNVSQAAKISGIPRSTFYKRLK 597 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 141/321 (43%), Positives = 188/321 (58%), Gaps = 25/321 (7%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 + G + + Q T A SS VLI GE+GTGKE+ A+AIH ++ P Sbjct: 260 ICGHNTVLRQEIATARKIAISSVPVLIRGESGTGKEVFARAIHTA---------SRRRGP 310 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FV VNCGAI +L E+E FGY+ GAFTG+ + G+ GLFE+AHGGTLFLDEIGE+P +Q Sbjct: 311 FVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLFELAHGGTLFLDEIGELPKEMQV 370 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL++K RVGG +PV VDVR+I+ATH NLE ++Q FR DL+YRL+++ L LPP Sbjct: 371 KLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMIEQQEFRHDLYYRLNVVSLYLPP 430 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR+R DI L ++ A+L + + A V L YDWPGN+REL N++ER Sbjct: 431 LRQRRDDIPELVHRGIQ-QFASLHGREIVKVEPEVMA---VFLEYDWPGNVRELYNVLER 486 Query: 458 LALFL--SVEPTPDLTPQFMQ--LLLPELARESAKTPAP-------RLLTPQQALEKFNG 506 L + V DL Q LLLP+ +A P R + QAL Sbjct: 487 LVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQNLPAATERMERTII-MQALAAAGF 545 Query: 507 DKTAAANYLGISRTTFWRRLK 527 K AA LGI R+T + +++ Sbjct: 546 RKAQAAKKLGIPRSTLYYKMQ 566 >UniRef50_Q181W8 Putative sigma-54 interacting regulatory protein n=6 Tax=Clostridium difficile RepID=Q181W8_CLOD6 Length = 666 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 195/355 (54%), Gaps = 40/355 (11%) Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 D + L RY D L + ++ + +S L+ GE+G+GKE+ A +IH Sbjct: 315 DLNQKGLYARYTFDDFLFKDKLTKEFIEEAKKIGKSDYTTLLYGESGSGKEIIAHSIHN- 373 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 +K PFVA+NC IAE+LLE+ELFGYEEGAFTG+R+GG+ GLFE+AHGGT Sbjct: 374 -------ISKRKDRPFVAINCATIAENLLESELFGYEEGAFTGARKGGKRGLFELAHGGT 426 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 LFLDEI + +QT+LLRV+EE+++ R+G +P+D+R+I+AT+ +L E + G FR Sbjct: 427 LFLDEINSLSFNIQTKLLRVIEERQIMRIGSDYIIPLDIRIIAATNESLTEKIVMGTFRA 486 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA--ALSAPFSAALRQGLQASE-TVL 439 DLFYRLS L + +PPLR+R DI+PL +F+ L L+ S L E L Sbjct: 487 DLFYRLSSLEINIPPLRDRREDIIPLFNNFVNEVLKDDGLNGINSIDENFVLTKDEMDKL 546 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLL-LPELARESAKTPAPRLLTPQ 498 +Y WPGN+REL+ + ++ + ++ D + +LL E+ + +++T A + + Sbjct: 547 YNYSWPGNVRELKTIAQKYVVTGKIKLRQDRDFKTKKLLPNSEVDKFNSETTASVEVQDE 606 Query: 499 QA-LEKFNGDKTA---------------------------AANYLGISRTTFWRR 525 + K N K + A LGISRT+ W++ Sbjct: 607 SINISKINDGKISIDIKEVNKYVEEKIISMLFAQGLSKNEVAQVLGISRTSLWKK 661 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/324 (42%), Positives = 192/324 (59%), Gaps = 30/324 (9%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 R L+ RY +++GQSP + V +T++ A + A VL+ GE+GTGKEL A+ IH Sbjct: 181 RAQLKDRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHF---- 236 Query: 266 RHDARQGKKSH-PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 Q K++ PFVA+NC AI E+LLEAELFG E+GAFTG+ + R G FE A+GGT+F Sbjct: 237 -----QSKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK--RIGKFEQANGGTIF 289 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDEI E+PL LQ +LLRVL+E+ V +G + + VDVR+ISAT+ +L E++++G FR DL Sbjct: 290 LDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDL 349 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE---TVLLH 441 F+RL+++ + +PPLRER DI L E +LK F R+ + E VL+ Sbjct: 350 FWRLNVIPIYIPPLRERKEDIPLLVEYYLK--------SFCNIYRKSVSIDEEALKVLVS 401 Query: 442 YDWPGNIRELRNMMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRL-- 494 YDWPGN+REL N +ERL + + V PD +L L T L Sbjct: 402 YDWPGNVRELANTIERLVVMTESSKIKVYDLPDTVRGVFKLKPYSLGDLKLPTEVEELER 461 Query: 495 LTPQQALEKFNGDKTAAANYLGIS 518 + L KFN + A LG++ Sbjct: 462 IRIMDTLPKFNFNIRKTAQALGLT 485 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 215/377 (57%), Gaps = 46/377 (12%) Query: 175 FIYSAATVRQAFSDALDMTRMSLRH----NTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 ++ S V + +D LD + H N TR+ ++ D++GQS M + + Sbjct: 320 YLVSLRPVYKQGNDELDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEAMLKAKA 379 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 +AR+ VL+ GE+GTGKEL AQAIH + + PF+AVNC A+ +L Sbjct: 380 LARRFARTRENVLLLGESGTGKELFAQAIHNSH---------RPGGPFIAVNCAAMPRNL 430 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 +E+ELFGYE G+FTG+ + GR G E+A+GGTLFLDEIG+MP+ LQ LLRVL++K V R Sbjct: 431 IESELFGYESGSFTGAEKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMR 490 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 +GG VD R+I+AT+ +L+ Q+ +FR DL++R+S+L +++PPLR R DI LAE Sbjct: 491 IGGRNYRQVDFRLITATNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAE 550 Query: 411 SFLKVSLAALSAPFSAALRQGLQA------SETVLLHYDWPGNIRELRNMM-------ER 457 F++ + A R GL A ++ +L Y+WPGN+R+L N M E Sbjct: 551 HFIE----------NYAKRVGLPAAVISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEE 600 Query: 458 LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL-------LTPQQALEKFNGDKTA 510 + LS P +L+ + + LP ++ + P +T ++ALE+ Sbjct: 601 GQIMLSHLPK-ELSEK--RTALPMVSEKECDKPEELFSMKDLEKVTIKKALERAGNSVAI 657 Query: 511 AANYLGISRTTFWRRLK 527 A++ LGIS+TT +R+LK Sbjct: 658 ASDLLGISKTTLYRKLK 674 >UniRef50_Q1H0A5 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1H0A5_METFK Length = 433 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 139/316 (43%), Positives = 189/316 (59%), Gaps = 21/316 (6%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M+ +P M+ V I A++ VL+ GE+GTGKEL A+AIH E +K P Sbjct: 132 MISHNPVMQHVFTMIGRVAKTDLPVLVRGESGTGKELVARAIHEE--------STRKGQP 183 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+A+NC A+ ++LE+ELFG+ +GAFTG+ R G+FE A GGTLFLDEI E+PL LQ Sbjct: 184 FIAINCAALNPNILESELFGHVKGAFTGAIRQ-HVGVFEQARGGTLFLDEIAEIPLDLQA 242 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVLE E T +G + DVR+I+ATH L E+ + GRFR DL YRL ++ + LPP Sbjct: 243 KLLRVLETGEFTPLGSERRYIADVRIITATHRALREEAKSGRFRHDLLYRLRVIPIFLPP 302 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI LA+ L + P Q QA+ L+ YDWPGN+RELRN + Sbjct: 303 LRERRHDIPLLAKHLLHEQAGDVLVP------QLTQAAVEHLMQYDWPGNVRELRNALS- 355 Query: 458 LALFLSVEPTPDLTPQFMQLL-LPELARESAKTPAPRLLTP----QQALEKFNGDKTAAA 512 A +S D+ ++L L R ++K A R Q A+E+ +G+ + AA Sbjct: 356 YAWVMSDGAVIDMQHLPAEILGLKNTGRAASKNTATRRQLDRHEIQAAIERHHGNLSQAA 415 Query: 513 NYLGISRTTFWRRLKS 528 + LGISRTT WR+LK+ Sbjct: 416 HSLGISRTTLWRKLKT 431 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 200/333 (60%), Gaps = 34/333 (10%) Query: 206 RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 R AL+ Y D+L +SP M+ V + ARS++ +L+ GE+G+GKE+ A+A+H Sbjct: 134 RQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVLARAVH----- 188 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG--SRRGGRAGLFEIAHGGTL 323 A + PFVAV+C A+ ESLLE+ELFG+E+G+FTG SRR G+ FE AHGGTL Sbjct: 189 ---AESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGK---FEAAHGGTL 242 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDE+G++ LQ LLRVLEE+ RVGG++P+ VDVR+I+AT+ +L +G+FR D Sbjct: 243 FLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFRED 302 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 LFYRL+++ + +PPLRER DI L E+F++ LS + + L+ +D Sbjct: 303 LFYRLNVIPILVPPLRERREDIPLLVENFVE----RLSVEMKRRIEGVSPDAMGALMAHD 358 Query: 444 WPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEK 503 WPGN+RELRN++ER A+ + Q L LP ++K P L + +EK Sbjct: 359 WPGNVRELRNVLERGAVVAT-----GTVIQLSDLGLPTRLEAASK---PGTLASLEEVEK 410 Query: 504 ---------FNGDKTAAANYLGISRTTFWRRLK 527 NG+ + +A LGI R T + +++ Sbjct: 411 RHVAAVLAHANGNVSQSARILGIDRVTLYNKMR 443 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 215/364 (59%), Gaps = 40/364 (10%) Query: 180 ATVRQAFSDALDMTRMSLR-HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS 238 A V +F D + +++ NTH+ D++G S + +V+ + S Sbjct: 250 AGVVASFQDFKETQKLAYEIMNTHEMIG--------FDDIVGASKPLLEVKAKAKKISAS 301 Query: 239 SAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH-PFVAVNCGAIAESLLEAELFG 297 ++ VLI GE+GTGKE+ A+AIH G H PFVA+NCGA+ E+LLE ELFG Sbjct: 302 NSNVLIVGESGTGKEIFARAIHS---------AGPYGHKPFVAINCGAMPENLLEIELFG 352 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 Y EGAF+G+RRGG+ G FE+A+GGT+FLDE+G M L LQT+LLRVL+E+ + RVGG +PV Sbjct: 353 YVEGAFSGARRGGKPGKFELANGGTIFLDEVGNMSLYLQTKLLRVLKERVIERVGGTRPV 412 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 PV++R+I+AT+ +L+E +Q+ FR DL+Y LS++ L +PPLR R DI L + ++K Sbjct: 413 PVEIRIIAATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPPLRTRQEDIPLLLDFYMKRFN 472 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQL 477 L + ++A + Y WPGN+REL +E +++E P ++P+ + Sbjct: 473 RLLGKDIKGFTDEAMEAC----IKYPWPGNVRELVYAVE---YAVNLEEEPLISPESLPP 525 Query: 478 LLPELARESAK---TPAPRLLTPQQ--------ALEKF---NGDKTAAANYLGISRTTFW 523 + E AR+ + +LL Q ALE++ + KT AA LGISR T + Sbjct: 526 AIREGARKRTRDGIAGGGQLLQLAQLEKEAITAALEQYGWSDEGKTKAARALGISRATIY 585 Query: 524 RRLK 527 R+++ Sbjct: 586 RKIQ 589 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 135/325 (41%), Positives = 193/325 (59%), Gaps = 27/325 (8%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 L ++G SP ++QV++ + S++ VLI GETGTGK A+AIH + Sbjct: 271 LAQIVGNSPAIKQVKEMAMKIGNSNSTVLITGETGTGKGHLAKAIHEA--------STRA 322 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFVA+NC +I E+L E+ELFGYE+GAFTG+++GG+ G FE+A GGTLFLDEIG+MPL Sbjct: 323 YSPFVAINCASIPENLFESELFGYEDGAFTGAKKGGKPGRFEMAEGGTLFLDEIGDMPLS 382 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLRVL+EK V R+GG + P+ VR+I+AT+ NLEE +++ FR DL+YRL+++ + Sbjct: 383 LQAKLLRVLQEKVVERIGGTRSFPIHVRIIAATNQNLEELVEKKAFRADLYYRLNVIPIH 442 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +P L ER DI LA SF++ F R+ + +L HY WPGN+REL N Sbjct: 443 VPSLAERKEDIELLAVSFMEKYGEQAGRTFFGIAREAIN----LLTHYHWPGNVRELENA 498 Query: 455 MERLALFLSVEPTPDLTPQFM--QLLLPELARESAKTPAPRLLTP-------QQALEKFN 505 +E +++E LT + +L L S PA ++ + +L+K Sbjct: 499 IE---YAMNMEQDTVLTADSLPPRLRARPLVAPSHSGPAIKVRVADAQADAIRASLQKHG 555 Query: 506 GD---KTAAANYLGISRTTFWRRLK 527 D K A LGI T +R+LK Sbjct: 556 SDLKGKQRVAEELGIGLRTLYRKLK 580 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 195/317 (61%), Gaps = 20/317 (6%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++ +S M+++ I A + A VLI GE+GTGKE+ A+AIH A ++ H Sbjct: 144 DLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIH--------ALSTRRFH 195 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 P V V+CGA+ E+LLE+ELFG+E+GAFTG++ + G FE+A GGT+FLDEIG++ L Q Sbjct: 196 PMVPVHCGALTETLLESELFGHEKGAFTGAQYR-KKGKFEVAEGGTVFLDEIGDISLKTQ 254 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 T LLRVL+E+E+ RVGG+QP+ VD R+++AT+ +LE+ +++G FR DLFYRL++ R++LP Sbjct: 255 TDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELP 314 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLR+R DI L F K + + + + + +L Y WPGN+REL N +E Sbjct: 315 PLRDRREDIPLLVNHFTK----KFAEQMNKRVTRVASPAMNMLQQYPWPGNVRELENAVE 370 Query: 457 RLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ------ALEKFNGDKTA 510 R A+ ++ EP T +++ + T P+ L + L++ N ++T Sbjct: 371 R-AMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVLDETNWNQTR 429 Query: 511 AANYLGISRTTFWRRLK 527 AA L I R T ++K Sbjct: 430 AAEMLDIDRVTLHHKIK 446 >UniRef50_Q18CQ7 Putative sigma-54-dependent transcriptional regulator n=19 Tax=Clostridium difficile RepID=Q18CQ7_CLOD6 Length = 670 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/264 (43%), Positives = 163/264 (61%), Gaps = 21/264 (7%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y D+ SP+M + ++S ++LI GE+GTGKEL AQ+IH Sbjct: 330 KYTFKDIKTNSPKMFECIDLAKKVSKSDLSILIRGESGTGKELIAQSIHN--------NS 381 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 +K+ PF+AVNC A+ E+LLE++LFGY++G FTG + G+ GLFE+A+ GT+FLDEIG+M Sbjct: 382 NRKNQPFIAVNCAAVPENLLESQLFGYDKGTFTGGLKDGKQGLFELANNGTIFLDEIGDM 441 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL LQT+LLRVL+EK++ VG H + +DVR+ISAT+ NLE+ + +FR DL+YRL+ + Sbjct: 442 PLELQTKLLRVLQEKQIMPVGSHNVINIDVRIISATNKNLEQMIDNSQFREDLYYRLNTI 501 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +PPLRER DIL + E + L P + L Q +Y W GNIREL Sbjct: 502 PINIPPLRERKEDILIIMEDLINKKLVI--TPEAKKLIQ----------NYMWKGNIREL 549 Query: 452 RNMMERLALFL-SVEPTPDLTPQF 474 +N+ L + + DL P Sbjct: 550 QNVTSYLNIMCEDIVLEKDLPPNL 573 >UniRef50_Q1D574 Sigma-54 dependent transcriptional regulator, Fis family n=7 Tax=Myxococcales RepID=Q1D574_MYXXD Length = 630 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 153/369 (41%), Positives = 218/369 (59%), Gaps = 40/369 (10%) Query: 169 AGMTGIFIYSAATVRQA---FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 A M IF A+ + Q SD L + LR D RY GD++G M Sbjct: 272 ADMLTIFAAQASLILQNAMLVSD-LKLDNTELRRKLED-------QRY--GDIVGACQGM 321 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 V + I A + +VLI GETGTGKEL A+ IHR R + PF+ +NCGA Sbjct: 322 RDVYKRIDKIAPTDISVLITGETGTGKELIAREIHR--------RSTRAKGPFITINCGA 373 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 I E+LLE+ELFG+ +GAFTG+ +AG F+ A GGTLFLDEIGEMPL LQ +LLR L+E Sbjct: 374 IPENLLESELFGHVKGAFTGAV-ATKAGKFQAAIGGTLFLDEIGEMPLQLQVKLLRALQE 432 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 K V +VG ++ PVD+RV++AT+ LE+++++ FR DL+YRL+++ L+LPPLRER D+ Sbjct: 433 KVVYKVGDNRGEPVDIRVVAATNKVLEDEVKKNTFREDLYYRLNVVTLKLPPLRERGEDV 492 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETV-LLHYDWPGNIRELRNMMERLALFLSV 464 + L FL+ + FS+ R G S TV + Y WPGNIREL N +++ A+ L+ Sbjct: 493 VVLGRFFLQ----KYAREFSSKAR-GFTPSATVSMRKYGWPGNIRELENRLKK-AVVLAD 546 Query: 465 EP-----TPDLTPQFMQLLLPEL-ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGIS 518 +P DL P+ ++ ++P L A+E + R + + L + NG++T A LG+ Sbjct: 547 KPLLGPDDLDLKPENLEPIMPLLQAKEEFQK---RYI--NEVLARNNGNRTKTAKDLGVD 601 Query: 519 RTTFWRRLK 527 T +R L+ Sbjct: 602 PRTIFRHLE 610 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 142/324 (43%), Positives = 189/324 (58%), Gaps = 28/324 (8%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G SP ME +R I A + ++LI GE+GTGKEL AQA+HR + + Sbjct: 141 LVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQALHR--------LSPRSNKA 192 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 V++NC A AE+LLE+ELFG+E GAFTG+ + GL E++ GGTLFLDEIGE PL LQ Sbjct: 193 LVSINCAAFAENLLESELFGHERGAFTGALER-KKGLMEVSDGGTLFLDEIGEFPLNLQP 251 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+EK RVGG + D+R+I+ATH NLE+ + +G FR DL+YRL+++ L LPP Sbjct: 252 KLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPP 311 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR R DI L++ FL+ LS L Q ++ L HY+WPGN+REL+N++ER Sbjct: 312 LRHRREDIPLLSQLFLE----RLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRELQNILER 367 Query: 458 LALFLSVEPT--PDLTPQFMQLLLP------ELARESAKTPAPRLLTP------QQALEK 503 LF PT + PQ P E A + P P L Q AL Sbjct: 368 GLLFCD-GPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQAALID 426 Query: 504 FNGDKTAAANYLGISRTTFWRRLK 527 G + AA LGISR+ +LK Sbjct: 427 ARGVQAKAAELLGISRSNLQYKLK 450 >UniRef50_D2R4Q9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4Q9_9PLAN Length = 644 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/346 (41%), Positives = 202/346 (58%), Gaps = 48/346 (13%) Query: 207 NALRTRYVLGD-------MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 N ++TR L D ++G+ + +R + A + AVLI GE GTGKE+ AQ+I Sbjct: 311 NLVQTRKQLVDHAASGVELVGECASIGALRSAVKRVADTDLAVLILGENGTGKEVVAQSI 370 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H Y ++ ++ PF+AVNC AI+ESLLE+ELFG+E+GAFT +R R G FE+A Sbjct: 371 H--YLSK------RRHEPFIAVNCAAISESLLESELFGHEKGAFTDAREM-RVGKFELAA 421 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEIG+M L Q +LLRVLEEK V RVGG P+P RV++AT+ NL E ++ R Sbjct: 422 DGTLFLDEIGDMSLGGQAKLLRVLEEKVVVRVGGSVPIPTKARVLAATNQNLAELVRAKR 481 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL----QAS 435 FR DLF+RL+++ L LPPLR R DI+ LAE FLK F+A R+ L A+ Sbjct: 482 FREDLFFRLNVVSLDLPPLRARGEDIVLLAEHFLK--------QFAARARRRLPKFTAAA 533 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL 495 LL + WPGNIRELRN+MERLA +L+ E + ++ +L +PA L Sbjct: 534 RKRLLMHPWPGNIRELRNLMERLA-YLAPEDQDKIDAGDLEFILS-----PGTSPATSLG 587 Query: 496 TP--------------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + +E G+ T AA +G+ R+ +R+++ Sbjct: 588 DGTLADATREFQMEFIHKTIESTRGNMTLAAEKMGLQRSNLYRKMR 633 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 129/328 (39%), Positives = 190/328 (57%), Gaps = 31/328 (9%) Query: 166 AEEAG--MTGIFIYSAATVRQAFSDALDMTRMSLRHNTHD----------------ATRN 207 EE G + G+ Y Q FS ++ M L N D N Sbjct: 203 VEEVGESIAGMHEYKLKINNQKFSVVGNIHDMGLNENQFDKIIIFQDNKSFKDIVTGVSN 262 Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 A V D+LG+ M +++ + + SS+ VLI GE+GTGKE+ A+A+H E Sbjct: 263 A-GNNIVCNDILGECEVMITLKKNLKKISLSSSTVLITGESGTGKEMFARAMHNE----- 316 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 +K F+A+NC AI +SLLE+ELFGY +GAFTG+ G+ G FE+A+ GT+FLDE Sbjct: 317 ---GNRKKEAFIAINCAAIPDSLLESELFGYVKGAFTGASSTGKIGKFELANKGTIFLDE 373 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IG+MPL LQT+LLRVL+E+ + ++G ++P+ +DVRVI+AT+ NL + +++ +FR DL+YR Sbjct: 374 IGDMPLYLQTKLLRVLQERRIIKIGSNKPIDIDVRVIAATNKNLVKLIEENKFREDLYYR 433 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 L+++ +PPLRER+ DI L +F++ L FS ++ + ET +Y WPGN Sbjct: 434 LNVIPFNIPPLRERIQDIKILVYNFIEKYTKLLDKHFS-SIHIDNKVWET-FYNYSWPGN 491 Query: 448 IRELRNMMERLALFLSVEP--TPDLTPQ 473 IREL N +E + L + T D P Sbjct: 492 IRELENTIEFMINMLGTDGNLTIDSIPN 519 >UniRef50_C2X5C8 Carbamoyl-phosphate synthase, large subunit n=4 Tax=Bacillales RepID=C2X5C8_BACCE Length = 698 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 121/260 (46%), Positives = 169/260 (65%), Gaps = 17/260 (6%) Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 +++R L T+Y +++G S + V+Q + A S VLI GE GTGKE+ AQAIHR Sbjct: 328 NSSRLGLTTKYSFENIIGVSDSITSVKQVAVRLAESDFTVLITGENGTGKEVFAQAIHR- 386 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 Y R D PFV VN + ESL E+ELFGYE G+FTG+++GG+ GLFE+AH GT Sbjct: 387 YSTRRDG-------PFVPVNFAGLTESLAESELFGYEGGSFTGAKKGGKMGLFELAHNGT 439 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIG+ PL +Q LLRVL+E++V R+GG++ +P++VRVI+AT+ NL M +G FR Sbjct: 440 IFLDEIGDAPLSIQAALLRVLQERQVMRIGGNRVIPINVRVIAATNRNLNSMMSKGAFRE 499 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL++L L +P LRER D+ L F + L F+ ++ VLL+Y Sbjct: 500 DLYYRLNVLPLNIPNLRERQEDLFILINYFFYDNGRKLR--FTPEVK-------NVLLNY 550 Query: 443 DWPGNIRELRNMMERLALFL 462 WPGNIREL N ++ L + + Sbjct: 551 SWPGNIRELENFIKYLMVIV 570 >UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QGL0_DESAH Length = 662 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/339 (40%), Positives = 197/339 (58%), Gaps = 36/339 (10%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 RT Y D+ G+ + + ++ + A + ++VL+ GE+GTGKEL AQAIH A Sbjct: 328 RTSYTFNDITGRCAGIIKAKELATMVAPTDSSVLLVGESGTGKELFAQAIH--------A 379 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + ++PFVA+NCGAI ++E+ELFGYE GAFTG+R G+AG E A GGTLFLDE+ Sbjct: 380 SSCRSNNPFVAINCGAIPADIIESELFGYEPGAFTGAREAGKAGRLETASGGTLFLDEVE 439 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 MPL Q +LLR K + RVGG +P+D+R+ISA+ +L E+ QGRFR DL+YR++ Sbjct: 440 AMPLSFQVKLLRAFSSKSMVRVGGVNEIPLDLRIISASKVDLIEEANQGRFREDLYYRIA 499 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET---VLLHYDWPG 446 + +PPL +R DI LA+ FLK LSA + LR + A L Y W G Sbjct: 500 TFPILIPPLNKRGGDIRLLAKQFLK----QLSAEY---LRSDIYADNDFFEALQSYPWRG 552 Query: 447 NIRELRNMMERLALFLSVEP---TPDLTPQFM-QLLLPELARESAKTPAPRLLTPQQALE 502 N+RELRN +ER A+ + ++ TP PQ + + + R+ AKT T +++L Sbjct: 553 NVRELRNTIER-AVVIGLDQQQLTPAQLPQSLKEYWISGKLRQHAKTTLNHHPTDKKSLL 611 Query: 503 KFNGDKTAA-------------ANYLGISRTTFWRRLKS 528 K D T A A LGI+R+T ++++++ Sbjct: 612 KIAEDTTIAMVLEEEKGNISRSAKRLGIARSTLYQKIET 650 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 132/303 (43%), Positives = 188/303 (62%), Gaps = 33/303 (10%) Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A++S+ VLI+GE+GTGKE+ A+ +H++ RH+ PFVA+NC AI +L+E+EL Sbjct: 336 AQTSSTVLIQGESGTGKEIVARYLHQQS-PRHN-------KPFVAINCAAIPATLIESEL 387 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGY +GAFTG+++GG G FE+A GGT+FLDEIG+MP +Q LLRVL+E+EV R+G + Sbjct: 388 FGYADGAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQEREVVRIGDSR 447 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 P PVDVRV++AT+ +L ++QG FR DL+YRL ++ + +PPL R+ DI L F+K Sbjct: 448 PRPVDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIYDLVPYFVK- 506 Query: 416 SLAALSAPFSAALRQGLQASETV---LLHYDWPGNIRELRNMMERLALFL--SVEPTPDL 470 A+ R+ + ++ V LL+Y WPGNIREL N ME + S T DL Sbjct: 507 ------KICRASGREPMGVTDEVYEALLNYHWPGNIRELENCMESMVAMAEHSYLTTDDL 560 Query: 471 TPQFMQLLLPELARESAKTPAPRLLTPQ------QALEKFNGDKTAAANYLGISRTTFWR 524 + + + SA + LL Q QAL + NG AA LGI RTT +R Sbjct: 561 PAEIAKNV-------SAVSCGETLLEQQTKKAIMQALAETNGKIAPAARLLGIGRTTLYR 613 Query: 525 RLK 527 +++ Sbjct: 614 KIE 616 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 167/236 (70%), Gaps = 12/236 (5%) Query: 220 GQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 279 G++P+ +++ + A + + VL++GE+GTGKEL A+ IH Y + +K+HPF+ Sbjct: 214 GKNPRFLEIKDLVRQIAVTDSTVLLQGESGTGKELFARYIH--YLS------PRKNHPFI 265 Query: 280 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRL 339 A+NC AI ++LLE+ELFGYE+G+FTG+RRGG+ G FE+A+GGT+FLDEIG+MPL LQ +L Sbjct: 266 AINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGGTIFLDEIGDMPLQLQAKL 325 Query: 340 LRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLR 399 LRVLE ++V R+G P+DVR+I+AT+ +L+E + FR DLF+RL++ + +PPLR Sbjct: 326 LRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFREDLFFRLNVFPVFIPPLR 385 Query: 400 ERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 ER DIL L + +LK PF + ++ +L +YDWPGNIREL+N++ Sbjct: 386 ERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIE----ILQNYDWPGNIRELKNVV 437 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 190/327 (58%), Gaps = 44/327 (13%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M+G SP M + I L A S A VLI GE+GTGKEL A+A+H A + P Sbjct: 141 MVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVARALH--------ASSARSRRP 192 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 V +NC A+ ESLLE+ELFG+E+GAFTG+ + R G F A GGTLFLDEIG++ +Q Sbjct: 193 LVILNCAALNESLLESELFGHEKGAFTGADKR-REGRFVEADGGTLFLDEIGDISPLMQV 251 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 RLLR ++E+EV RVG +Q + VDVR+I+ATH +L E++ GRFR+DL+YRL+++ + +PP Sbjct: 252 RLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPP 311 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA----SETVLLHYDWPGNIRELRN 453 LR R DI PLA FL+ ++ R+ +Q + +L+HY WPGNIREL N Sbjct: 312 LRHRREDIPPLARYFLQ--------RYAERNRKAVQGFTPQAMDLLIHYAWPGNIRELEN 363 Query: 454 MMERLALFLSVE--------------PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ 499 +ER + L+ E P D P + P + E A Sbjct: 364 AVERAVVLLTGEYISERELPLAITGTPVAD-APHGDDSIQPLVEVEKEAILA-------- 414 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRL 526 ALE+ G+KT AA LGI+R T +L Sbjct: 415 ALERTGGNKTEAARRLGITRKTLLAKL 441 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/350 (41%), Positives = 198/350 (56%), Gaps = 42/350 (12%) Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 NA + DM+G++P M++V + I +RSS +VLI GE+GTGKEL A A+HR Sbjct: 130 NAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHALHR----- 184 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 H R PF+A+N AI + L+E+ELFG+E+GAFTG+ + R G FE A+GG+LFLD Sbjct: 185 HSPR---ALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQV-RQGRFEQANGGSLFLD 240 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EIG+MPL +QTRLLRVL E + RVGG+ PV VDVR+I+ATH +LE+ + +G FR DL++ Sbjct: 241 EIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYH 300 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 RL+++R+QLPPLR+R DI LA FL+ + L + Q L+ ++ Y W G Sbjct: 301 RLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLK----TMMEYVWSG 356 Query: 447 NIRELRNMMERLALFL-SVEPTPD------------------LTPQFMQLLLPELARESA 487 N+R+L N+ L + S E P LT Q L A E+ Sbjct: 357 NVRQLENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEAL 416 Query: 488 KTPAPRLLT---PQ-------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 +L PQ AL G K AA LG R T R+LK Sbjct: 417 GEGKENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLK 466 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/357 (40%), Positives = 204/357 (57%), Gaps = 41/357 (11%) Query: 191 DMTRM-SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETG 249 DMT + RH +ATR L Y LG+++G+S M++V + A S + VLI+GE+G Sbjct: 125 DMTELQKARHKAEEATR-LLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGESG 183 Query: 250 TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRG 309 TGKEL A+AIH +++ Q + PFV VNC A+ E+LLE+ELFG+ +GAFTG+ R Sbjct: 184 TGKELIARAIH------YNSDQADQ--PFVTVNCSALTETLLESELFGHVKGAFTGAVRD 235 Query: 310 GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 369 RAG FE AH G++FLDEIGE+ +Q +LLRVL+E+EV RVG Q +D+RVI ATH Sbjct: 236 -RAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHR 294 Query: 370 NLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALR 429 +L E + QG FR+DL+YRL + + LPPLR+R D+ L F+ A + Sbjct: 295 DLNELLAQGVFRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAP 354 Query: 430 QGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-------PTPDLTPQFMQLLLPEL 482 + ++ ++ Y WPGN+REL N +E + S E P +TP+ PE Sbjct: 355 EAMR----LVFEYHWPGNVRELENAIEHAFVLTSGEQIQVNDLPAEIITPRPS----PER 406 Query: 483 ARESAKTPAPRLLTPQQA------------LEKFNGDKTAAANYLGISRTTFWRRLK 527 ARE+ PR +Q LE +K A A LG+SRT W+ +K Sbjct: 407 AREAG---VPRTAGSRQHHEQPDREQLLALLEANQWNKAAVARQLGVSRTAVWKYMK 460 >UniRef50_A9ET26 Transcriptional regulator n=2 Tax=Myxococcales RepID=A9ET26_SORC5 Length = 648 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 137/318 (43%), Positives = 197/318 (61%), Gaps = 23/318 (7%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 G+++G P M +V + + A + +VLI GETGTGKEL A+ +HR R + Sbjct: 329 FGEIIGACPSMLEVFRKLQKVAATDISVLITGETGTGKELIARELHR--------RSPRD 380 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFV +NCGAI E+L+E+ELFG+ +GAFTG+ R G F+IA GTLFLDEIGE+PL Sbjct: 381 GGPFVTINCGAIPENLIESELFGHVKGAFTGAI-ASRPGKFQIADKGTLFLDEIGELPLN 439 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLR L+E+ V RVG +P VD+R+++AT+ NLEE+++ G FR DL+YRL+++ L Sbjct: 440 LQVKLLRALQERVVFRVGDSKPEKVDIRIVAATNRNLEEEIRAGNFREDLYYRLNVVNLW 499 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LPPLRER D+L +A KV L+ + +A+R A+ + + Y WPGNIR+L N Sbjct: 500 LPPLRERGDDVLIIA----KVLLSKYADELGSAVRGFSPAALSAIKKYPWPGNIRQLENR 555 Query: 455 MERLAL-----FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKT 509 +++ + L+VE DL P ++P E AK R +ALE+ NG++T Sbjct: 556 IKKALVLCDQALLAVEDL-DLGPGAETAIMP---LEKAKEEFQRRYV-LEALERNNGNRT 610 Query: 510 AAANYLGISRTTFWRRLK 527 A LG+ T +R L+ Sbjct: 611 QTARDLGVDPRTIFRYLE 628 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/286 (45%), Positives = 183/286 (63%), Gaps = 23/286 (8%) Query: 182 VRQAFSDALD---MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS 238 +R A +A++ + R +L + A RN+L +++G SP M +++ TI + A + Sbjct: 111 IRVAIGNAVERGSLKRQNLAYKRDAAGRNSL------DNIVGTSPAMGKLKNTIRMVAST 164 Query: 239 SAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 298 + VLI GE+GTGKEL A+A+H R G+ PF ++NCGA E+LLE+ELFGY Sbjct: 165 GSTVLIHGESGTGKELVARAVHT-----CSPRAGE---PFTSINCGAFPETLLESELFGY 216 Query: 299 EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVP 358 +GAFTG+ + R GLFE++ GGT+FLDEI EM L +Q +LLRVL+E+ + VGG +P Sbjct: 217 VKGAFTGAVQNKR-GLFEVSTGGTIFLDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIP 275 Query: 359 VDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA 418 VDVRVI+AT+ NL+ + G FR DL+YRLS++ +Q+PPLRERV DI LA FLK Sbjct: 276 VDVRVIAATNKNLDAQVADGVFREDLYYRLSVIPVQVPPLRERVDDIELLANHFLKKYAP 335 Query: 419 ALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER-LALFLS 463 A A + L L YDWPGN+R+L N +ER +AL +S Sbjct: 336 AAGKSIRAIRVESLGD----LREYDWPGNVRQLENTIERAVALEMS 377 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/309 (43%), Positives = 193/309 (62%), Gaps = 24/309 (7%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++G SP +++V + I A SSA VLI GETGTGKEL A+AIH Y R K Sbjct: 201 EIIGYSPPIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHN-YSPR-------KEK 252 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 P++ +NC AI E+LLE+ELFG+E+GAFT +R R G FE+A GGTLFLDE+G++ LPLQ Sbjct: 253 PYIKLNCAAIPENLLESELFGHEKGAFTDARET-RKGRFELADGGTLFLDEVGDLSLPLQ 311 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 ++LR+L+E+E RVGG + + VDVR+++AT+ +LEE ++ G FR DLFYRL+++ + P Sbjct: 312 AKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSP 371 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLR+R D++ L+ FL+ + + +E +L HYDWPGNIREL N +E Sbjct: 372 PLRDRGDDVILLSRYFLERFCKRHAKELHLTPK-----AEELLKHYDWPGNIRELENSIE 426 Query: 457 RLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------QALEKFNGDKT 509 RL L + P+ + + + +LP K R + +AL++ +G K Sbjct: 427 RLVL---LAPSESIDEEVVLSVLPGRVHGYTKEVKTRADLEELERSAIIKALKECHGIKL 483 Query: 510 AAANYLGIS 518 AA LGI+ Sbjct: 484 QAAKKLGIT 492 >UniRef50_C0Z891 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z891_BREBN Length = 426 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 143/308 (46%), Positives = 183/308 (59%), Gaps = 38/308 (12%) Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 S + VLI GE+GTGKEL A+AIH E G+ PFVAVNC AI E+LLE+ELFG Sbjct: 135 SISTVLIRGESGTGKELLAKAIHCE--------SGRSRQPFVAVNCAAIPETLLESELFG 186 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE GAFTGSRR G+ G FE+AH GT+FLDE+G++PL LQ +LLRVL+EK V RVGG + + Sbjct: 187 YEGGAFTGSRREGKPGKFELAHKGTIFLDEVGDIPLSLQPKLLRVLQEKTVDRVGGVKTL 246 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL---K 414 VDVRVI+ATH +LE +++G FR DL+YRL+++ L+L PLRER DI + FL Sbjct: 247 GVDVRVIAATHRDLESMVREGTFREDLYYRLNVIPLRLKPLRERTEDIALYLQHFLYRYG 306 Query: 415 VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM--------------ERLAL 460 L A L Q LQA Y+WPGNIR+L N + E L Sbjct: 307 TLLQKGRLELEAQLVQRLQA-------YEWPGNIRQLENAVEYMVNMAEGHVIGNEELPE 359 Query: 461 FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 +L E P T L L +L E ++ R L K+ DK A AN L IS + Sbjct: 360 YLLFEDEP--TTVGSDLGLEKLVAEYERSILQRYLNAG----KYGQDKAAIANELRISLS 413 Query: 521 TFWRRLKS 528 T +R+++ Sbjct: 414 TLYRKMEK 421 >UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum RepID=Q93KC9_EUBAC Length = 518 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 137/367 (37%), Positives = 210/367 (57%), Gaps = 35/367 (9%) Query: 173 GIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTI 232 G+ + +A ++ +++ R + + R Y ++G+ P+ + Sbjct: 170 GMVVAAAFSIEHIITESTSRKRRKMHERISEC-----RAVYNFEKIIGEDPKFLDTIEYA 224 Query: 233 LLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH-PFVAVNCGAIAESLL 291 + S + +LI GETGTGKE+ AQ+IH ++H PFVAVNCGAI +L+ Sbjct: 225 KKISGSKSTILITGETGTGKEVFAQSIHN---------YSDRAHMPFVAVNCGAIPLNLI 275 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+ELFGYEEGAFTG+++GG G F+ A GGT+FLDEIGEMP+ +Q RLLR +EE VTR+ Sbjct: 276 ESELFGYEEGAFTGAKKGGSEGKFQSADGGTIFLDEIGEMPIDMQVRLLRAIEEGVVTRI 335 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 GG +P+PVDVR+I+AT+ L + ++ G+FR+DLFYRL++L + L PLRER DI+ L + Sbjct: 336 GGIRPIPVDVRIIAATNRELRQAVESGKFRKDLFYRLNVLPVCLLPLRERRMDIMLLVDY 395 Query: 412 FLKVSLAALSAPFSAALRQGLQASET---VLLHYDWPGNIRELRNMMERLALFLSVEPTP 468 ++ LS ++ + +ET L++Y WPGNIRE++N++E L L+ P Sbjct: 396 YMN----KLSRRLG---KKKIVFNETEIDTLVNYSWPGNIREVQNVVE---LVLNTGRLP 445 Query: 469 D----LTPQFMQLLLPELARESAKTPAPRLLTPQQ---ALEKFNGDKTAAANYLGISRTT 521 D + P E K L + ALE+ + + A LGI+R T Sbjct: 446 DEIACVQPCMRNDEYSAKKSEEEKHYDLHALEKEHITRALEECGYNISKTARKLGIARNT 505 Query: 522 FWRRLKS 528 +++++ Sbjct: 506 LYKKIRD 512 >UniRef50_B9M2U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=13 Tax=Proteobacteria RepID=B9M2U3_GEOSF Length = 474 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 139/322 (43%), Positives = 195/322 (60%), Gaps = 25/322 (7%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 G ++G+SPQM QV I + S AV I GE+GTGKEL A+A+H +K Sbjct: 144 FGGIIGKSPQMLQVFSMIRKVSLSDVAVFITGESGTGKELVAKALHNMSL--------RK 195 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGS--RRGGRAGLFEIAHGGTLFLDEIGEMP 332 + PFV +NCGAI E+LLE+E+FG E GAFTG+ R G+A E AH GT+FLDEIGE+P Sbjct: 196 NGPFVPINCGAIPENLLESEMFGTERGAFTGAHARILGKA---EYAHKGTMFLDEIGELP 252 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 LQ +LLR L+EK + RVGG + + VD R+ISAT+ ++ + + +G FR DL+YR++++ Sbjct: 253 GNLQVKLLRFLQEKVLQRVGGREDIAVDARIISATNMDIAKAIGEGLFREDLYYRIAVIT 312 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 + LPPLRER DI+ LA FLK + + F R +S +L +Y WPGN+REL Sbjct: 313 INLPPLRERGDDIMLLANLFLKRA----TEEFCKKTRGFSTSSLKILKNYTWPGNVRELE 368 Query: 453 NMMERLALFLS----VEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQ--QALEKFN 505 N ++R A+ +S +EP LT M L++P + + K RL AL + Sbjct: 369 NRVQR-AVIMSDSPLIEPADLGLTENSMPLMMPPMGCVTLKDARDRLEREMIISALGRQE 427 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G+ AA LG+SR T + +K Sbjct: 428 GNIAKAAEVLGVSRPTLYDLMK 449 >UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FQL8_DESHD Length = 697 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 134/330 (40%), Positives = 197/330 (59%), Gaps = 38/330 (11%) Query: 220 GQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 279 G S +M + + +ARS A +L+ GE+GTGKEL AQAIH EY + S PF+ Sbjct: 378 GASTKMLRTKSLAQRFARSPANILLIGESGTGKELFAQAIHNEY---------RPSGPFI 428 Query: 280 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRL 339 +NC AI ++L+E+ELFGY+ GAFTG+++ G G E+A GGTLFLDEIG+MP+ +Q L Sbjct: 429 VLNCAAIPKNLIESELFGYDSGAFTGAKKNGSPGKIELAEGGTLFLDEIGDMPIEIQAVL 488 Query: 340 LRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLR 399 LRVLE K+V R+GG + VD R+++AT+ +L +Q G+FR+DL+YRLS+LR+ +PPLR Sbjct: 489 LRVLENKQVMRIGGSKYRAVDFRMVAATNKDLATLVQSGQFRQDLYYRLSVLRVDIPPLR 548 Query: 400 ERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLA 459 +R +D+L LAE F++ + + L + ++ L+ Y WPGN+R+L N + A Sbjct: 549 QRDSDVLSLAEFFIQ------KYNWRSKLPKLSHETKIKLMEYTWPGNVRQLENAI-IYA 601 Query: 460 LFLS------VEPTPDLT------PQFMQLLLPELARESAKTPA----------PRLLTP 497 L +S E PD P + L EL++E+ A + Sbjct: 602 LNVSEDELILPEHLPDEIIHNKNHPASLSLNPIELSKENNLNEAELRDVVSLKEAEKIVV 661 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q AL K + AA LG+S++T +R+LK Sbjct: 662 QNALAKSGNNICIAAELLGLSKSTLYRKLK 691 >UniRef50_C0ZGM5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGM5_BREBN Length = 471 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 137/317 (43%), Positives = 196/317 (61%), Gaps = 30/317 (9%) Query: 222 SPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 281 SP + T + A+S + L+ GETG GKE+ A+AIH + +K PF+AV Sbjct: 169 SPLYQAQLHTARIAAQSLSNTLLLGETGCGKEVLARAIH--------SSSSRKDGPFLAV 220 Query: 282 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 341 N A+ L+ +ELFGY EGAFTG+++GG+ G FE A+GGTLFLDEIGEM L LQ LLR Sbjct: 221 NIAALPRELIASELFGYAEGAFTGAKKGGQPGKFEAANGGTLFLDEIGEMSLELQVLLLR 280 Query: 342 VLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRER 401 VLEE++VTR+G H+ P+D+RVI+AT+ ++EED+Q G FR DL+YRL+IL++++PPLRER Sbjct: 281 VLEERKVTRLGSHEEKPLDIRVIAATNRSIEEDVQNGLFRADLYYRLNILQIRIPPLRER 340 Query: 402 VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL- 460 DI LA FL+ L ++ +++ +L + WPGNIRELRN++ER L Sbjct: 341 KEDIAALANEFLQ----QLHTQYAGGPTGICESALAILQQHSWPGNIRELRNIVERAFLH 396 Query: 461 -----FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL-----LTPQQALEKFNGDKTA 510 +++ P Q L +E+ P P L T QQA+ + +A Sbjct: 397 AYGDAWVTSHHFPSEWQQQYGL------QEAPSEPLPLLRELERQTIQQAITE-APSISA 449 Query: 511 AANYLGISRTTFWRRLK 527 AA LGI+R+T +R+++ Sbjct: 450 AAKKLGIARSTLYRKME 466 >UniRef50_Q1D9F3 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Cystobacterineae RepID=Q1D9F3_MYXXD Length = 546 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 148/326 (45%), Positives = 197/326 (60%), Gaps = 35/326 (10%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G P + Q+ + I A SSAAV I GE+GTGKEL A+AIH A + + P Sbjct: 231 IIGGDPSVRQLSELIERVAPSSAAVTILGESGTGKELVARAIH--------ACSQRANRP 282 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 V VNC AI++ L+E+ELFG+E+G+FTG+ G R G FE A GGTLFLDEIGE+PL LQ Sbjct: 283 LVPVNCAAISKELIESELFGHEKGSFTGAM-GARKGAFEEADGGTLFLDEIGELPLDLQA 341 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLR LE E+ RVG +P VDVRV++AT+ +L ++GRFR DL+YRL ++ L LPP Sbjct: 342 KLLRALEGGEIKRVGASRPQTVDVRVVAATNRDLLAAAREGRFREDLYYRLCVIPLHLPP 401 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR R AD+ LAE F++ AP ++R A E L H+ WPGNIRELRN++ R Sbjct: 402 LRSRKADLGSLAEHFVRT-----YAPRGQSVRFTPAALER-LQHHAWPGNIRELRNVVHR 455 Query: 458 LALFLSVEPTPDLTP-QFMQLLLPELARES--AKTPAPRLLTPQQALEK----------- 503 AL L P D F Q EL RE+ A P +T +Q LEK Sbjct: 456 -ALLLRKGPLIDAGDISFDQ----ELNRETGIAVPELPPGMTLEQMLEKLERQIVEAALR 510 Query: 504 -FNGDKTAAANYLGISRTTFWRRLKS 528 +N ++ A LG++R+T ++RLK Sbjct: 511 RYNNNRERVARELGVARSTLFKRLKD 536 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 208/363 (57%), Gaps = 45/363 (12%) Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 T++ + A R L ++ M+G++ +M QV + + L A + A VLI GE+GTGK Sbjct: 118 TKVQALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGK 177 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 E+ A AIHR + R G+ + V+C A+ E+LLEAELFG+E GAFTG+ + R Sbjct: 178 EVIANAIHR-----NSPRCGQ---ALIKVSCAALPETLLEAELFGHERGAFTGALKQ-RL 228 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G FE+AH GTLFLDEIGE+ +Q +LLRVL+EK RVGG + + DVR++ AT NL+ Sbjct: 229 GRFELAHKGTLFLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLK 288 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS---APFSAALR 429 E+++ GRFR DLFYRL+++++ LPPLRER DIL LAE L+ S + + FS A R Sbjct: 289 EEVEAGRFREDLFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAAR 348 Query: 430 QGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP----DLTPQ------------ 473 VLLHY +PGN+REL N +ER A+ L+ E DL Q Sbjct: 349 D-------VLLHYSFPGNVRELENAIER-AVALAQEGDEIQAWDLCGQTVCPFLGGPLQS 400 Query: 474 ---FMQLLLPEL--ARESAKTPAPRLLTPQQ----ALEKFNGDKTAAANYLGISRTTFWR 524 F Q + + AR++ R ++ LE+ +TAA+ LG+SR W Sbjct: 401 GCGFCQEGVSNVTNARQTGTLAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWE 460 Query: 525 RLK 527 + K Sbjct: 461 KCK 463 >UniRef50_B7H394 Nitrogen assimilation regulatory protein n=11 Tax=Acinetobacter RepID=B7H394_ACIB3 Length = 423 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 141/313 (45%), Positives = 189/313 (60%), Gaps = 32/313 (10%) Query: 222 SPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 281 SP+M ++ I A + VL+ GE+G+GKEL AQAIH D Q +K+ FVA+ Sbjct: 126 SPEMTRMFSIIQRVAITEFPVLVRGESGSGKELVAQAIH-------DYSQ-RKNKIFVAI 177 Query: 282 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 341 NC A+ ++LE+ELFG+ +GAFTG+ R + G+FE A GGTLFLDEI E+PL LQ +LLR Sbjct: 178 NCAALNSNILESELFGHVKGAFTGAIRDHK-GVFERAAGGTLFLDEIAEIPLELQAKLLR 236 Query: 342 VLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRER 401 VLE E T VGG +P+ +VR+I+ATH L E+ + GRFR DL YRL ++ + +PPLRER Sbjct: 237 VLETGEFTPVGGEKPIQANVRIITATHKALREEAKAGRFRHDLLYRLRVIPIFIPPLRER 296 Query: 402 VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN-MMERLAL 460 DI + + LK S S R Q + VLL+YDWPGN+REL+N ++ L + Sbjct: 297 KVDIPLIVDQILKES----STQLDTMPRHVNQKAMQVLLNYDWPGNVRELKNTLLYALTM 352 Query: 461 F-----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRL-LTP---QQALEKFNGDKTAA 511 + VE P+ +LL A + K P L+P Q ALEK+N + Sbjct: 353 ANGKDEIEVEDLPN------ELL---NAEDYVKLPETNTELSPENVQAALEKYNHNLNMV 403 Query: 512 ANYLGISRTTFWR 524 AN GISRTT WR Sbjct: 404 ANIFGISRTTLWR 416 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 15/310 (4%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++ +S +M ++ + + AR+ VL+ GE+G GKE+ A+ IH+ H R + Sbjct: 122 EIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHK-----HSPRS---NQ 173 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PFVA+NC AI E+LLEAELFG+E+GAFTG+ + G FE+A+ GT+ LDEI EM LQ Sbjct: 174 PFVAINCAAITETLLEAELFGHEKGAFTGATER-KPGKFELANKGTILLDEISEMAYRLQ 232 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRV++EKE+ RVGG +P+P+DVR+I+ T+ +L E++++G FR DLFYR+++ +++P Sbjct: 233 AKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIP 292 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER DI+PLAE FLK +S F+ + + LL W GN+REL N + Sbjct: 293 PLRERSDDIIPLAEFFLKRLSNKMSKNFTIT-----EDMKKFLLKKSWQGNVRELENFIY 347 Query: 457 RLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLG 516 R A+ LS + L + L E ++ K AL+K G++T AA LG Sbjct: 348 RSAV-LSQDGILRLHEDEINLFEEEKPVKAGKLKDAERELIVDALKKTEGNRTKAAKILG 406 Query: 517 ISRTTFWRRL 526 IS T ++ Sbjct: 407 ISVRTLRNKI 416 >UniRef50_A6B3R9 Acetoacetate metabolism regulatory protein AtoC n=8 Tax=Vibrio RepID=A6B3R9_VIBPA Length = 318 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 137/320 (42%), Positives = 194/320 (60%), Gaps = 40/320 (12%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G S + ++R I YA+ A VLI+GETG GK L A+ IH+ ++S P Sbjct: 23 LIGNSACIHELRNAIKKYAQCDAEVLIQGETGVGKGLCARLIHQ--------LSSRRSSP 74 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FV VNCGAI L+ +ELFG+E+GAFTG+ R G + AH GTLFLDEIG+MP LQ Sbjct: 75 FVEVNCGAIPSGLIASELFGHEKGAFTGAI-SDRIGFIQKAHKGTLFLDEIGDMPSDLQI 133 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 LL LE K++ +VG + + VD RVI+A+H +L+ ++ QG FR DLFYRL+IL L +PP Sbjct: 134 HLLHFLESKQIHKVGADKFIDVDCRVIAASHVDLKSEVVQGEFREDLFYRLNILPLTIPP 193 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR+R DIL L+E F L LS + + ++A LL + WPGN+RELRN+++R Sbjct: 194 LRKRGKDILMLSEHF----LTDLSHGQVHNMSEEVKAK---LLKHRWPGNVRELRNVIQR 246 Query: 458 LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ----------QALEKFNGD 507 A+ + + T LL+ +L E+++ R L P QA+E+ + Sbjct: 247 -AIVMCEDNT---------LLVADLGLENSE----RQLLPSVDQIDLDYLLQAIEENKHN 292 Query: 508 KTAAANYLGISRTTFWRRLK 527 +AAA +LGISRTT +R +K Sbjct: 293 MSAAARHLGISRTTLYRLIK 312 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 139/333 (41%), Positives = 203/333 (60%), Gaps = 24/333 (7%) Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 D + + +RY +++ S +M ++ + A S+A+VL+ GE+GTGKEL A+AIH Sbjct: 144 DRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKELVARAIHYN 203 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + FVAVN A+ E+L+E+ELFG+ +GAFT +R+ +AGLF A GGT Sbjct: 204 --------SPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQS-KAGLFNEADGGT 254 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEI EM PLQ +LLR L+E+E+ VG +P VDVRV++AT+ +L+E M +G FR Sbjct: 255 IFLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFRE 314 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET--VLL 440 DL+YRL++++++LPPLR R DILPLAE FL ++ A L+ P S L A+ET +L Sbjct: 315 DLYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRL-----AAETQRILH 369 Query: 441 HYDWPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQ------LLLPELARESAKTPAPR 493 Y WPGN+REL N++ER L L P+ P ++ L +AR R Sbjct: 370 SYPWPGNVRELANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMNLAQLER 429 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++ L++ G+KT A LG+ R T +R+L Sbjct: 430 EFI-ERILKEEGGNKTRTAQRLGLDRKTLYRKL 461 >UniRef50_A5CZF6 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZF6_PELTS Length = 485 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 128/331 (38%), Positives = 191/331 (57%), Gaps = 37/331 (11%) Query: 219 LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPF 278 + +SPQM ++ + I A++ + +LI GE+GTGKE+ A+ IH+ + PF Sbjct: 163 VAESPQMREIIKNIDTIAKTHSTILITGESGTGKEVIARYIHKHSL--------QAEGPF 214 Query: 279 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTR 338 + +NC +I LLE+E FGY GAFTG+ G+ GLFEIA+ GTLFLDEI E+PL +Q + Sbjct: 215 IPINCASIPHELLESEFFGYVGGAFTGANPQGKPGLFEIANNGTLFLDEIAELPLTMQPK 274 Query: 339 LLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPL 398 LLRVLE E+ RVGG + +VR+I+AT+ +L+ ++Q FR DL+YRL++L + +PPL Sbjct: 275 LLRVLESGEIKRVGGTDIIRTNVRLIAATNKDLKTMVRQNLFRNDLYYRLNVLPINIPPL 334 Query: 399 RERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERL 458 RER DI+ L++ FL+ ++ ++ R QA L+Y WPGN+RELRN++ERL Sbjct: 335 RERPEDIVALSKRFLEY----INKKYNLKKRFTEQAI-NAFLNYSWPGNVRELRNVVERL 389 Query: 459 ALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------------------- 498 A+ P ++ + LLL + E + L + Sbjct: 390 AI---TSPDDNIGNINIHLLLDGNSLEESNITTGTYLPHENKIYQGTLKSFLKKVEAEYI 446 Query: 499 -QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 Q L+ NG AA LGI RT +R++K+ Sbjct: 447 KQVLDICNGKVGEAAKLLGIHRTMLYRKIKN 477 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 141/328 (42%), Positives = 189/328 (57%), Gaps = 22/328 (6%) Query: 204 ATRNALRTRYVLGD------MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 A N L R V G M+G SP + Q+RQ + A + + VLI+GE+G GKE+ A+ Sbjct: 134 ARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGKEVVAR 193 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 A+H+ + PFVAVNC AI+ L+E+ELFG+ +GAFTG+R R GLF Sbjct: 194 ALHQ--------LSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREA-RNGLFHY 244 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 AHGGTLFLDEIGE+PL LQ+RLLRVLEE++V VG Q VPVDVRV++AT+ +L ++ Sbjct: 245 AHGGTLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAA 304 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 RFR DLFYRL ++ L +PPLRER D+ LA +F++ L P L + S Sbjct: 305 CRFREDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLP---PLLISPEVSAR 361 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP 497 ++ H WPGN+RELRN +ER LF + +L Sbjct: 362 LMAH-PWPGNVRELRNFVERSLLFGDFPLASLAGAVAPPPPASAAPLLLEEVEKRHILA- 419 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRR 525 L++ G+KT AA LG+SR T R+ Sbjct: 420 --VLDQCGGNKTRAAELLGVSRKTLERK 445 >UniRef50_B5Q0I7 Sigma-54 interaction domain protein n=40 Tax=Salmonella enterica RepID=B5Q0I7_SALHA Length = 642 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 148/381 (38%), Positives = 212/381 (55%), Gaps = 41/381 (10%) Query: 170 GMTGIFIYSAATVRQAFSDALDM-TRMSLRHNTH-----DATRNALRTRYVLGDMLGQSP 223 G + +Y RQ L M T SL+ H + +R L RY D+L ++P Sbjct: 277 GAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTENP 336 Query: 224 QMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 283 +M + I YA + A +LI GE+GTGKE+ AQ+IH +A Q + + PFVA+NC Sbjct: 337 EMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIH-------NASQ-RVNGPFVAINC 388 Query: 284 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVL 343 GA+A +LE+ELFGY GAFTG+ G+ GLFE+AH GT+FLDEI E+ PLQTRLLRVL Sbjct: 389 GAMAPQILESELFGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLRVL 448 Query: 344 EEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVA 403 +E+++ R+G Q +PVD+RVI+AT+ L + + G FR DL+YRL++L++ PLR+R Sbjct: 449 QERQIMRLGSDQMIPVDIRVIAATNQTLTKLIADGTFREDLYYRLNVLKVTTIPLRKRPE 508 Query: 404 DILPLAESFLKVSLAALSAP---FSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 DI + S L P + AL Q LQ + WPGN+R+L N++ERL L Sbjct: 509 DIKAIGLSLLTSFSQHYKRPALTLTPALWQELQ-------RFAWPGNVRQLSNIIERLVL 561 Query: 461 FLSVEPTPDLTPQFMQLLLPELARESAKTPAP--------------RLLTPQQALEKFNG 506 + P T +LLL +L S + P+ RL ++ LE Sbjct: 562 SIDHSPA---TLDEGRLLLDDLEEGSRREPSTCHDCQMLAGDYKTIRLRILRKLLEAERD 618 Query: 507 DKTAAANYLGISRTTFWRRLK 527 +K+ A L + RT+ R ++ Sbjct: 619 NKSLVAKRLNVDRTSLTRWIR 639 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 230 bits (587), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 186/325 (57%), Gaps = 28/325 (8%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 ++ G + ++ + + A++ A +LI GE+G GKEL AQAIH + + KK Sbjct: 146 FSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQAIHEA------SLRSKK 199 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 + F+ +NCGAI +L E+ELFGYE GA+TG+ +GG+ G E+A GGTLFLDE+GE+PL Sbjct: 200 A--FIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFLDEVGELPLD 257 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 +Q +LLR L+EKE+ R+GG P +DVR+I+AT+ LE+ + G FR DLFYRL++ Sbjct: 258 MQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLFYRLNVFTAC 317 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH-YDWPGNIRELRN 453 +PPLRER DI LA F K + P ++ T LH Y WPGNIRELRN Sbjct: 318 IPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEA-----TKRLHAYSWPGNIRELRN 372 Query: 454 MMERLALF-----LSVEPTPDLTPQFMQLLLP------ELARESAKTPAPRLLTPQQALE 502 +ERL + + L PQ P L E R+L Q L+ Sbjct: 373 FIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLTDERESLEKTRIL---QTLQ 429 Query: 503 KFNGDKTAAANYLGISRTTFWRRLK 527 + G+K+ A LG+SR ++++K Sbjct: 430 QTYGNKSITAKKLGMSRANLYKKIK 454 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/322 (41%), Positives = 192/322 (59%), Gaps = 19/322 (5%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 + D+LG+SP + + + AR + +LI GETGTGKEL AQ+IH Sbjct: 341 FTFDDILGESPALLRQIELARTAARQNTRILILGETGTGKELFAQSIHNC--------SP 392 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 ++S PFVA+NC AI L+E+E+FGY GAFTG+R+GG+ G E+A GGT+FLDEI +MP Sbjct: 393 RRSGPFVALNCAAIPRELMESEIFGYRSGAFTGARKGGQVGKLELADGGTIFLDEINQMP 452 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L LQ++LLR L+E +TR+G +P+ +DVRVI+A + +L + G FR+DL+YRLS++ Sbjct: 453 LDLQSKLLRALQEGTITRLGDTRPIRIDVRVIAAANEDLYGKSRTGEFRQDLYYRLSVVE 512 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L LPPLRER DI +A L + P AL A E +L Y WPGN+REL Sbjct: 513 LALPPLRERGDDIALIARHLLDTLGEKIDKP---ALSLSPPAIE-LLRQYPWPGNVRELE 568 Query: 453 NMMERLALFL--SVEPTPDLTPQFMQLLLPELARESAKT-----PAPRLLTPQQALEKFN 505 N++E A+ S+ L + PE +A + PA +L + A+E+FN Sbjct: 569 NVLEMGAIMAEGSIIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEFN 628 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G+ LG+SR T +RR++ Sbjct: 629 GNVDLVGRKLGLSRATVYRRMQ 650 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 150/355 (42%), Positives = 215/355 (60%), Gaps = 43/355 (12%) Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 SL+ H + L + +GD++ QS ME + Q + + A+S + VLI GETGTGKE+ Sbjct: 326 SLQQENHQLSEQLL-SNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVI 384 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH+ ++ P V +NC AI SLLE+ELFG+++GAFTG+ R G F Sbjct: 385 ARAIHQ--------LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRF 435 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 EIA GGTLFLDEIG++PL LQ +LLRVL+E+E+ R+GG + +PV+VRVI+AT+ +L + + Sbjct: 436 EIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMV 495 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA-----ALSAPFSAALRQ 430 + +FR DLFYRL++ L+LPPLR+R DI LA+ F + +A A+ A + ALRQ Sbjct: 496 EDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQ-KMARHMNRAIDAIPTEALRQ 554 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQ-LLLPELARESA-K 488 L+ +DWPGN+REL N++ER A+ L+ + +L Q LLP L +SA + Sbjct: 555 --------LMSWDWPGNVRELENVIER-AVLLTRGNSLNLHLNVRQSRLLPTLNEDSALR 605 Query: 489 TPAPRLLTPQ-------------QALEKFNG---DKTAAANYLGISRTTFWRRLK 527 + +LL P Q L + NG AA LG+ RTT R++ Sbjct: 606 SSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/360 (40%), Positives = 200/360 (55%), Gaps = 45/360 (12%) Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 N TR+ + ++G++P M++V + I +RSS +VLI GE+GTGKEL A A+ Sbjct: 124 NQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIADAL 183 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR K + PF+A+N AI + L+E+ELFG+E+GAFTG+ + R G FE AH Sbjct: 184 HRH--------SPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQV-RQGRFEQAH 234 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GG+LFLDEIG+MPL +QTRLLRVL E + RVGG+ P+ VDVR+I+ATH LE+ +Q+G+ Sbjct: 235 GGSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGK 294 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLF+RL+++R+ LPPLRER DI LA FL + L Q +ET+L Sbjct: 295 FREDLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQ----TETIL 350 Query: 440 LHYDWPGNIRELRNMMERLALFLSVE--------------------PTPDLTPQFMQLLL 479 + W GN+R+L N+ L + S + P L + L Sbjct: 351 MSLPWSGNVRQLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLD 410 Query: 480 P-----ELARESAKTPAPRLLTPQ-------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 P + A E+ K + + PQ AL G K AA LG R T R+LK Sbjct: 411 PLANWTKTALENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLK 470 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 141/395 (35%), Positives = 217/395 (54%), Gaps = 50/395 (12%) Query: 159 AGLITDLAEEAGMTGIFIYSAA-----TVRQAFSDALDMTRMSLRHNTHDATRNALRTRY 213 G D+ +E G+F Y A + A AL ++ +++ + R AL +Y Sbjct: 96 VGFAIDIMKE----GVFDYLVAPFDNDILELAVKRALKVSSLTIENKN---LRKALELQY 148 Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 G+++G SP + + + + R+ + VL+ GE+GTGKEL ++AIH + Sbjct: 149 NFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRAIH--------YNSDR 200 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 K PFVA+NC AI E+LLE+ELFGYE+GAFTG+ + + G FE+A GGT FLDEI EM Sbjct: 201 KCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKT-KKGRFELAAGGTFFLDEISEMSA 259 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 +Q ++LR++E KE+ R+GG + VDVR+I AT+ +L + +++G+FR DL+YR+S+ + Sbjct: 260 AVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDLYYRISVFPI 319 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG----LQASETVLLHYDWPGNIR 449 LP LRER DI+PL++ F+ FSA + + E +L+ + W GNIR Sbjct: 320 MLPALRERSGDIIPLSKHFVN--------HFSAKMGKTPIVLSSEVEKILIKHKWEGNIR 371 Query: 450 ELRNMMERLALFLS--VEPTPDLTPQFMQ-LLLPELARESAKTPAPRLLTP--------- 497 EL+N++ER + V T L + PEL ++ + P Sbjct: 372 ELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDDL 431 Query: 498 -----QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE+ + T AA LG++R TF RL+ Sbjct: 432 EKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQ 466 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/243 (47%), Positives = 160/243 (65%), Gaps = 13/243 (5%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 +++G + ++ + + +++ VLI GE+GTGKEL A+AIH +K Sbjct: 355 FNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHN--------NSNRK 406 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 + PFV VNC +I E+LLE+ELFGYE+GAFTG+ + + G F IA GT+FLDEIG+MPL Sbjct: 407 NKPFVRVNCASIPENLLESELFGYEKGAFTGAVQS-KPGKFAIADTGTIFLDEIGDMPLS 465 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 +Q +LLRVL+E+E+ VGG P +DVRVI+AT+ NLEE ++ G FR DL+YRL++L + Sbjct: 466 MQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGIN 525 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LPPLRER DI LAE F + L+ + Q + +L+ Y WPGNIREL N+ Sbjct: 526 LPPLRERKEDIPELAEHF----ITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENI 581 Query: 455 MER 457 MER Sbjct: 582 MER 584 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 125/319 (39%), Positives = 195/319 (61%), Gaps = 34/319 (10%) Query: 224 QMEQVRQTILLYAR---SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 Q + +++T+ L A+ ++ +LI+GE+G GKE+ A+ IH +K P + Sbjct: 170 QNKDLQKTLSLAAKVANTNCTILIQGESGVGKEVMAKCIHNA--------SNRKERPMIK 221 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 VNC +I E+LLE+ELFGYEEGAFTG+R+GG+ G FE+A+ GT+ LDEIG+M L +Q++LL Sbjct: 222 VNCASIPENLLESELFGYEEGAFTGARKGGKLGKFELANKGTILLDEIGDMSLTMQSKLL 281 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RVL+EKE+ RVGG + + +DVRVI+AT+ NLEE +++ FR DL+YRL ++ + +P LR Sbjct: 282 RVLQEKELERVGGTKTIKLDVRVIAATNQNLEEMVEKNEFRSDLYYRLHVVPIHIPALRC 341 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R DI+PL F++ + + + +L Y WPGN+REL+N++E Sbjct: 342 RREDIMPLVRYFIERNGGDEGTDLTP-------GAARMLEEYGWPGNVRELQNVIE---- 390 Query: 461 FLSVEPTPDL--TPQFMQLLLPELARESAKTPAPRLLTP----------QQALEKFNGDK 508 + + T D+ F Q L + A + P L ++AL++ NG+K Sbjct: 391 YAMIVKTGDILEIKDFPQYLRGDGAEDGPAEDGPCRLKDAVEQLEKSMIKRALKRNNGNK 450 Query: 509 TAAANYLGISRTTFWRRLK 527 + A N LG+SR +F+ +L+ Sbjct: 451 SMAINELGLSRRSFYEKLE 469 >UniRef50_D0ZE77 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZE77_EDWTE Length = 463 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 198/316 (62%), Gaps = 27/316 (8%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++GQ+P + +T+L A S+++++ GE+GTGKEL A+AIHR H R + P Sbjct: 165 LIGQAPAFLRAWRTMLRVAGGSSSIMLSGESGTGKELFARAIHR-----HSPRAAR---P 216 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+A+NC AI L+ +ELFGY EGAFTG+RRGG +G FE AHGGTL LDEIGE+PL Q Sbjct: 217 FIAINCSAIPSGLISSELFGYREGAFTGARRGGASGQFEAAHGGTLLLDEIGELPLDAQA 276 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 LLRVLEE+ V R+G + +P+DVR+I+AT+ +L + +++ FR+DL+YRL+++ + LPP Sbjct: 277 ILLRVLEERTVVRLGDTRGIPIDVRIITATNRDLRQMVRERTFRQDLYYRLNVIPIVLPP 336 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR+R DI LA F LA+L A+ A L Y WPGNIR+LRN++ER Sbjct: 337 LRQRPQDIPLLAHFF----LASLGGSRVTAIEAEAMAR---LCAYRWPGNIRQLRNVIER 389 Query: 458 LALFL--SVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQA----LEKFNGDKTAA 511 F + DL P+ Q PE E + +P ++ ++++ +KT Sbjct: 390 GINFTDGATLRCGDLPPELDQ---PE---EESTSPDSYAAWERRQIWTLMQRYRANKTRI 443 Query: 512 ANYLGISRTTFWRRLK 527 A LGISR+T +++++ Sbjct: 444 AQALGISRSTLYKKIR 459 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 194/317 (61%), Gaps = 37/317 (11%) Query: 230 QTILLYAR----SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 Q ++++ + + A VL+ GE+GTGKEL A+AIH+ RH +PF+ VNCGA Sbjct: 276 QKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNS-PRH-------MNPFIVVNCGA 327 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 I +L E+ELFGYE GAFTG+ R G+ G+FE+A+GGTLFLDE+GEMP+ +Q +LLRVL+E Sbjct: 328 IPNNLFESELFGYEGGAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQE 387 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 RVGG Q V V+VRV++ATH NLE+ + + +FR DL+YRL+++ L++PPLR+R DI Sbjct: 388 GTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDI 447 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE 465 L F++ + +++ A T L Y WPGN+REL+N +ERL + + Sbjct: 448 PELVHLFMQ----EFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGD 503 Query: 466 PTPD---------------LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTA 510 + +T Q L +A E+ K +L+ + L++ G+++ Sbjct: 504 IIDEAALPENLRRNTYISLVTSPVSQGKLMNVAVEAEK----QLIL--KTLQQVRGNRSE 557 Query: 511 AANYLGISRTTFWRRLK 527 AA LGI R+T + +L+ Sbjct: 558 AARVLGIPRSTLYYKLR 574 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/320 (40%), Positives = 192/320 (60%), Gaps = 36/320 (11%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 LRT+ V+ S +M ++ ++ A + VLI+GE+G GKEL A IH Sbjct: 622 LRTQCVI-----HSSKMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIH-------- 668 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 + ++ P + +NCGAI E+LLE+ELFGYE GAFTG+ + G+ G+FE+A G LFLDEI Sbjct: 669 SNSNRREQPMIKINCGAIPENLLESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEI 728 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 G++PL LQ +LLRVL++KE+ RVGG +P+ VDVR+I+ T+ NL+E +++ FR+DLFYRL Sbjct: 729 GDLPLSLQVKLLRVLQDKEILRVGGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRL 788 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL---LHYDWP 445 +++ + +PPLRER DI LA FL F+ + S ++L + YDWP Sbjct: 789 NVIPITVPPLRERREDIPILANHFLD--------NFNQKHGMNKKLSGSILAYFMEYDWP 840 Query: 446 GNIRELRNMMERLALFLSVEPT---PDLTPQFMQLLLPELARESAKTPAPRLLTPQQALE 502 GN+REL N++ERL + S+ T DL+ EL E+ ++ Q ALE Sbjct: 841 GNVRELENLVERLVV-TSLNQTITAHDLSA------WSELKPENKSDNEHGIVRLQDALE 893 Query: 503 KFNGDKTAAANYLGISRTTF 522 N ++ N + ++T+ Sbjct: 894 --NTERRILENAFSVCKSTY 911 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/324 (44%), Positives = 192/324 (59%), Gaps = 19/324 (5%) Query: 207 NALRTRYVLG-DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 N LR ++ D++ +S + V + A + VLI GE+GTGKEL A+ IHR Sbjct: 156 NHLRALHIKDPDIIFRSRAIAAVVELATKVADVDSTVLITGESGTGKELFAKLIHRH--G 213 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 R D R PF+ +NCGAI E+LLE+ELFGY+ GAFTG++R G+ GLFE+A GGTLFL Sbjct: 214 RGDNR------PFIKINCGAIPETLLESELFGYDGGAFTGAKREGKPGLFELADGGTLFL 267 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGEMP LQ +LLRV++EK V RVGG + V+VR+I+AT+ +L +QQG FR DL+ Sbjct: 268 DEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQGTFREDLY 327 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL ++ L +PPLRER DI L + FL F+ + L L Y WP Sbjct: 328 YRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFG--FNKVI---LPDVIDRLTEYSWP 382 Query: 446 GNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQAL-EK 503 GN+R+L N++ERL + E T D+ PQ + +P L + K T + L E Sbjct: 383 GNVRQLENIIERLVVTTPGNEITADMLPQQVNARIP-LPKTGTKLKEAVAATEKYLLTET 441 Query: 504 FN--GDKTAAANYLGISRTTFWRR 525 F G+ A+ LGI RTT R+ Sbjct: 442 FRQYGNWNKVADVLGIDRTTACRK 465 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/322 (43%), Positives = 192/322 (59%), Gaps = 26/322 (8%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 M+G SP M+++ + I A + A VLI GETGTGKE+ A IH +++ P Sbjct: 147 MIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLIH--------VNSARRNGP 198 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 V VNC A+ ESLLE+ELFG+E+GAFTG+ R G FE+AH G++FLDEIGEM L Q Sbjct: 199 MVKVNCAALPESLLESELFGHEKGAFTGAV-AQRKGRFELAHKGSIFLDEIGEMTLATQK 257 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLR+L+E+E RVGG V VDVRVI+AT+ +LE D++ G FR DL+YRL+++ L LP Sbjct: 258 KLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPA 317 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR+R+ DI LAE FL A S+P + + ++ L +YDWPGN+R+L + +ER Sbjct: 318 LRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMER----LNNYDWPGNVRQLEHEIER 373 Query: 458 LALFLS-----VEPTPDLTPQFMQLLLPEL-ARESAKTPAPRLLTP------QQALEKFN 505 A+ LS L P L ++ AR K+ LL Q+AL + + Sbjct: 374 -AVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVERLALQEALVQHD 432 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 D AA LG+S F +R K Sbjct: 433 DDLKVAARSLGLSEAEFQKRQK 454 >UniRef50_B9R2I1 Sigma-54 interaction domain family n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R2I1_9RHOB Length = 460 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 122/253 (48%), Positives = 168/253 (66%), Gaps = 17/253 (6%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G SP M+ +R+ IL +A++ AAVLI GETGTGKE+ AQA+H E+ AR K+ P Sbjct: 144 LIGNSPAMQVLRRQILHFAQTDAAVLITGETGTGKEVIAQALH-EFSAR-------KNAP 195 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+A+N A+ E+++EAELFG+E GAFTG+ R R G E A+ G LFLDEI MP+PLQ Sbjct: 196 FMAINAAALPETMVEAELFGHEAGAFTGADRQ-RIGRIEAANAGVLFLDEIVSMPMPLQA 254 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E++V R+GGH+PV VD+R++SA + + E + GR R DL +RL+ + L++PP Sbjct: 255 KLLRVLQERKVDRIGGHRPVDVDIRLVSAANVDPREAVASGRLREDLLFRLNAIELEIPP 314 Query: 398 LRERVADILPLAESFLK--VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 LRER D + L ++FL + AP +AL E + Y WPGN+RELRN Sbjct: 315 LRERGRDSILLFDTFLNRFAVQYGMEAPTPSAL------DEAFMQTYAWPGNVRELRNAA 368 Query: 456 ERLALFLSVEPTP 468 ER L V P P Sbjct: 369 ERFVLNAQVNPQP 381 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/333 (39%), Positives = 195/333 (58%), Gaps = 26/333 (7%) Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 D R+ L +Y G+++G+SP+++++ I + + A +LI+GETGTGKEL A+AIH Sbjct: 128 DRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAKAIH-- 185 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + +H FV V+C ++ E+LLE+ELFG+E+GAFTG+ + R G F A GT Sbjct: 186 ------YNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKD-RVGRFRKADHGT 238 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIG + L +Q +LLRVL++ E VG + + VDVR+I+AT+ +LE +++G FR Sbjct: 239 IFLDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRS 298 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DLFYRL+++R+ LPPLRER DI LA FL + R L +L Y Sbjct: 299 DLFYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLN----ILTSY 354 Query: 443 DWPGNIRELRNMMERLALFLSVEP-TPDLTPQFMQLL--LPELARESAKTPAPRLL--TP 497 WPGNIREL N++ER + TP+ P + + + P L+ + P LL T Sbjct: 355 AWPGNIRELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGK----PLQELLEQTE 410 Query: 498 QQ----ALEKFNGDKTAAANYLGISRTTFWRRL 526 +Q LE + DK A L ISR + + +L Sbjct: 411 RQIIINTLEANDADKEKTAKILKISRASLYNKL 443 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/322 (43%), Positives = 188/322 (58%), Gaps = 28/322 (8%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 + M+G S + ++ A S + VL+ GETGTGKEL AQAIH Sbjct: 324 FTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGKELFAQAIHNA--------SR 375 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 ++S PFV +NCGAI LLE+ELFGY +GAFTG+++GGR G FE+AH GT+ LDEIG+MP Sbjct: 376 RRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHRGTILLDEIGDMP 435 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 +Q +LLRVL+ EV R+G +P VD R+I+ TH +L + + GRFR DL+YRL++L Sbjct: 436 HDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRFREDLYYRLNVLP 495 Query: 393 LQLPPLRER-VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +P LRER DIL L E FL S ++ P Q + L ++ WPGN+REL Sbjct: 496 IVIPALRERGRDDILALTEFFL--SRNRVTPP------QLTVGAVKALENHPWPGNVREL 547 Query: 452 RNMMERLALFLSVEPTPDLTPQFMQLLLPEL-ARESAKTPAPRL-----LTPQQALEKFN 505 N ++R AL L E D L +PE A S+ TP L L +Q LE Sbjct: 548 ENTIQR-ALHLCEENEIDAAC----LGVPETAAAASSSTPRGTLEEIERLAIEQTLEDTK 602 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G+ A LGISR T +R++K Sbjct: 603 GNMAETAKTLGISRATLYRKVK 624 >UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Bacillus RepID=C1PD04_BACCO Length = 950 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 138/307 (44%), Positives = 192/307 (62%), Gaps = 35/307 (11%) Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A++ A VLI GE+GTGKEL A AIH E +K PF+A+NCGA+ + L+ +E Sbjct: 656 AKTDANVLIIGESGTGKELFANAIHHESL--------RKDKPFIAINCGAVPKDLIHSEF 707 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGY EGAFTGS++GG+ GLFE A+GGT+FLDEIGEMPL LQ LLRVL+E+E+TR+G H+ Sbjct: 708 FGYSEGAFTGSKKGGKKGLFEEANGGTVFLDEIGEMPLDLQVTLLRVLQEREITRIGEHK 767 Query: 356 PVPVDVRVISATHCNLEEDM-QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK 414 PVPVDVR+I+AT+ NL +++ G FR DL+YRL++ +++LPPLR+R DI L+E FL Sbjct: 768 PVPVDVRIIAATNKNLRDEIAYNGSFRSDLYYRLNVFQIELPPLRKRPGDIQELSEYFLS 827 Query: 415 V--SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER---LALFLSVEPTPD 469 F+A Q +L Y+WPGNIREL N++ER L+ F SV Sbjct: 828 QLNRKNGTRKEFAADAVQ-------ILKQYEWPGNIRELENIIERSYYLSGFHSV----- 875 Query: 470 LTPQFMQLLLPELAR---------ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 + P+F+ L + E +T P LE+ + + + LG+SRT Sbjct: 876 ILPEFLDPYLLNTYKHTQQQDQMIEGKETEEPEKQHLLALLEETGFNISKISRILGVSRT 935 Query: 521 TFWRRLK 527 T +++L+ Sbjct: 936 TVYKKLQ 942 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 150/417 (35%), Positives = 229/417 (54%), Gaps = 54/417 (12%) Query: 140 DARGQINELKANGTE----AVVGAGLITDLAEEAGMTGIFIYSAATVR-----QAFSDAL 190 D G + L+ + + + G G I + E M G F Y V+ + S A+ Sbjct: 65 DGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKM-GAFDYITKPVKFDELLHSVSTAI 123 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 R+ R NT + L+ +Y + +G SPQ+++V + I A + + VLI GE+GT Sbjct: 124 KFKRLE-RENT--ILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGT 180 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL A+AIH R D P V +NCGAI E LLE+ELFG+E+GAFTG+ + Sbjct: 181 GKELIARAIHYNSPRRDD--------PMVIINCGAIPEELLESELFGHEKGAFTGAHKT- 231 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 R G FE+A+GGT+FLDEIG+M LQ +LLRV++E+ R+G + + VD+R+++AT+ + Sbjct: 232 RIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKD 291 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 L E +++ FR DL+YRL+++ +++PPLR+R +DI L + F+ L+A +++ Sbjct: 292 LMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFIN----KLAAEKERPVKR 347 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVE--PTPDLTPQFMQLLLPELARESAK 488 QA+ L+ + WPGN+REL N++ER+ + S + DL + L +K Sbjct: 348 ISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGL--------DSK 399 Query: 489 TPAPRLLTPQ------------------QALEKFNGDKTAAANYLGISRTTFWRRLK 527 P L P QALE+ N KT AA L I+RTT ++K Sbjct: 400 EPEAGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMK 456 >UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Clostridia RepID=B8G1B8_DESHD Length = 628 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 184/300 (61%), Gaps = 25/300 (8%) Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A++ +VL++G+TGTGKE+ A+ IH +K+ PF+A+NC AI +LLE+EL Sbjct: 337 AQTDFSVLLQGQTGTGKEIIARMIHE--------LSPRKNGPFIALNCAAIPNTLLESEL 388 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGY +GAFTG+RRGG+ G FE+AHGGT+FLDEIG+MPL Q LLR+L+EK + R+GG Sbjct: 389 FGYADGAFTGARRGGQPGKFELAHGGTIFLDEIGDMPLNAQVALLRLLQEKALVRIGGKT 448 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 +DVRVI+A+H +L+ + FR DLFYRL ++ ++LPPLRER+ D+ L F+ Sbjct: 449 LQKIDVRVITASHKDLKALVDAHAFRHDLFYRLKVVSIELPPLRERLEDLPELVTHFIHK 508 Query: 416 SLAALSAPFSAALRQGLQASETV---LLHYDWPGNIRELRNMMERLALFL--SVEPTPDL 470 + AA+ P + +E+V Y WPGN+REL N + + S+ DL Sbjct: 509 ACAAIGRPM-------IDMAESVYPYFYSYSWPGNVRELENCLAGMVAMCNGSLLTVRDL 561 Query: 471 TPQFMQLLLPELARESAKTPAPRLLTPQ---QALEKFNGDKTAAANYLGISRTTFWRRLK 527 P+ + L + E A + T Q QAL K +G A+ LGISRTT +R++K Sbjct: 562 PPEVRESLSEKTEDEDVSLLASQ--TRQIILQALVKTDGKILPASRLLGISRTTLYRKMK 619 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/335 (38%), Positives = 194/335 (57%), Gaps = 41/335 (12%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L +Y L ++G S M++V + + ++A VLI GE+GTGKEL A+ IH +H+ Sbjct: 137 LDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGKELIAKTIHNNSLRKHN 196 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 P V +N AI E++LE+ELFG+E+G+FTG+ R G FE AH GT FLDEI Sbjct: 197 --------PLVILNSAAIPENILESELFGHEKGSFTGALYQ-RKGKFEYAHRGTFFLDEI 247 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 G+MPL Q +LLRVLE+ +TR+G ++ + VDVR+I+AT+ L +++G+FR DL++RL Sbjct: 248 GDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFREDLYFRL 307 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 +++R++LPPLRER+ DI L ++F++ S +S + Q + +LL Y WPGNI Sbjct: 308 NVIRIKLPPLRERLEDIPLLLDAFIR----EFSRLYSKEILQITPEARKILLRYQWPGNI 363 Query: 449 RELRNMMERLAL-----FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALE- 502 REL+N +E + + +L VE PD + ++S + P L +E Sbjct: 364 RELKNCIESMVVITTKKYLDVEDLPD-----------HIEKKSDEMPVSHGLMAGMTMED 412 Query: 503 -----------KFNGDKTAAANYLGISRTTFWRRL 526 G++ AA LGI T +R+L Sbjct: 413 AEIELIKCTLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_Q24UK7 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=Q24UK7_DESHY Length = 642 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/341 (39%), Positives = 202/341 (59%), Gaps = 34/341 (9%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 L ++ D++ + +M +V + YA + VLI+GETGTGKEL +Q+IH + R Sbjct: 314 GLVAKHHFRDIINNNSKMSEVITMAMRYANTDCNVLIKGETGTGKELISQSIHNGH--RQ 371 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 +R+ PFVAVNC ++ SLL +ELFGY EGAFTG+ +GG+ GLFEIAHGGTLFLDE Sbjct: 372 RSRK-----PFVAVNCASLDGSLLNSELFGYSEGAFTGASKGGKPGLFEIAHGGTLFLDE 426 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 I +M +Q LLRV++EKE+ R+G Q V VDVR+I+A++ +L + +++G FR DL+YR Sbjct: 427 IDKMKKDVQANLLRVIQEKEIRRIGSDQVVSVDVRIIAASNEDLLDLVRKGEFREDLYYR 486 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 L++L+L LPPLRER DI L ++V L + ++ + A + H +W GN Sbjct: 487 LNVLKLTLPPLRERRGDIPHL----VRVYLQKYTEKYNKINIELPAAVLDKISHCEWYGN 542 Query: 448 IRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE--------LARESAKTPAPRLLTPQQ 499 IR+L + +ER + + DL P+ + ++L E ARE + + + Sbjct: 543 IRQLNHFIERCVVL--CDDGNDL-PEIILMMLEEEFSTRPTLHAREEEEQDNDTINVRIR 599 Query: 500 ALEKFNGD-------KTAAAN-----YLGISRTTFWRRLKS 528 +LE+ N + KT +N +GISR T + LKS Sbjct: 600 SLEEMNAEIVHRVKAKTKISNGELALMMGISRPTLLKMLKS 640 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 14/184 (7%) Query: 20 TRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLAN-ERCDAIIA-AGSNGAYLKS 77 TRL E R E+D I + F+ AV IR K+A+ E D IIA G+ L+ Sbjct: 15 TRLLEKVRK---EYDF--KIDAYEATFDDAVELIRGKVAHREHWDPIIATGGATLGLLRD 69 Query: 78 RLS-VPVILIKPSGYDVLQALAKAGKLTSSIGVVT-YQETIPALVAFQKTFNLRLDQRSY 135 L +P + I P+ YD++ AL +A K +IG+ Q A+ A + Y Sbjct: 70 NLGRMPWVNIFPTEYDLVIALEQAKKTKKTIGLFNPGQIDTEAIKAVCSAIQIDAHIYRY 129 Query: 136 ITEEDARGQINELKANGTEAVVGAG-LITDLAEEAGMTGIFIYSAA-TVRQAFSDA---L 190 + ++ Q+ + +G E +GAG I+ E + + + S T+R+AF A + Sbjct: 130 NSWKEVLVQVEKAYQDGVEVAIGAGEKISSAVERKNIQYVSVTSGEYTIRRAFKYAQLLV 189 Query: 191 DMTR 194 D+ R Sbjct: 190 DLKR 193 >UniRef50_B4SRV8 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=20 Tax=Gammaproteobacteria RepID=B4SRV8_STRM5 Length = 482 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/340 (42%), Positives = 189/340 (55%), Gaps = 42/340 (12%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G +P M + + I A++ AVLI GETGTGKEL A A+HRE + P Sbjct: 149 LVGDTPPMRALFRAIGRLAQAPLAVLITGETGTGKELVAHALHRE--------SPRAQAP 200 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FVA+N AI LLE+ELFG+E GAFTG++R G FE A+GGTLFLDEIG+MPLPLQT Sbjct: 201 FVALNTAAIPAELLESELFGHEAGAFTGAQRR-HIGRFEQANGGTLFLDEIGDMPLPLQT 259 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 RLLRVL + E RVGG + + VDVRV++ATH +LE + QG+FR DL +RL ++RLQLPP Sbjct: 260 RLLRVLAQGEFFRVGGRELIRVDVRVVAATHQDLEGLVAQGKFRADLLHRLDVVRLQLPP 319 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI LA +FL + L P LQA L +DWPGN+REL N+ R Sbjct: 320 LRERREDIAQLANTFLAAAARKLDTPPKRLTAAALQA----LREHDWPGNVRELENVCWR 375 Query: 458 LALFLSVE-------------------PTPDLTPQFMQLLLPELARESAKTPAPRLLTP- 497 +A + + T P + LL E AR L Sbjct: 376 MAALAAADTIGVADVDTALNRTRGRRSSTTSADPGQWEALLAEWARRQLAEGVEGLHAQV 435 Query: 498 ---------QQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + AL+ +G + AA LG+ R T R+L + Sbjct: 436 RERVDHALLEAALQITHGRRAEAAARLGLGRNTLTRKLGA 475 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 195/323 (60%), Gaps = 29/323 (8%) Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 +SP M+ V L AR+ VLI GE+GTGKE+ A+ IH +K F+ Sbjct: 263 KSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSL--------RKDKAFLP 314 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 VNCGAI E+L+E+E FGYE GAFTG+ + G+ G FE+A GGTLFLDE+GE+PL LQ +LL Sbjct: 315 VNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLL 374 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 R L+ KE+ R+G +P+ VDVR+I+AT+ NL + +++G+FR DL+YRL+++ +++PPLR+ Sbjct: 375 RALQTKEIMRLGSTKPIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRK 434 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R +I+P+A F L ++ + + + + E +L Y WPGNIREL N++E + Sbjct: 435 RKEEIIPMAMEF----LTRINEKYGSEKKFTREVLE-ILKEYKWPGNIRELENVIEHAYV 489 Query: 461 FLSVEPTPDLTPQFMQLLLPE-----LARESAKTPAPRLLTP----------QQALEKFN 505 E + P + L E L R++ + L + AL K+ Sbjct: 490 VSQDEINVEDLPIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKY- 548 Query: 506 GDKTAAANYLGISRTTFWRRLKS 528 G +T AA+ LG++++T R++K Sbjct: 549 GTETRAASVLGVNQSTISRKIKK 571 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/244 (47%), Positives = 170/244 (69%), Gaps = 13/244 (5%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 MLG P+M +V + + A +++ VLI GE+GTGKEL A+AIH E R D +P Sbjct: 148 MLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAIH-EGSQRRD-------NP 199 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+A+NC AI E+L+E+ELFG+E+G+FTG+ G+FE A+GGT+FLDEIGEM + +Q Sbjct: 200 FMAINCAAIPETLIESELFGHEKGSFTGAH-ARELGVFEAANGGTVFLDEIGEMNVSMQA 258 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLR ++EKEV RVGG +P+DVR+ISAT+ LE+++++G FR DL+YRL+++R+ LPP Sbjct: 259 KLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYRLNVIRINLPP 318 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER +D+ LAE F+K A R L+ +L++Y WPGN+R+L +++ER Sbjct: 319 LRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALK----LLMNYSWPGNVRQLESVIER 374 Query: 458 LALF 461 L Sbjct: 375 AVLM 378 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 136/336 (40%), Positives = 205/336 (61%), Gaps = 38/336 (11%) Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L R+ +M+G+S M +V I L A S A+VL+ GE+GTGKE+ A A+H ++ Sbjct: 137 LEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGKEMVAAAVH------YN 190 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 +++ KS +V V+C ++ ESL+E+ELFGYE GAFTG+ R G FE A GGTLFLDEI Sbjct: 191 SQRRAKS--YVRVSCASLPESLIESELFGYERGAFTGANER-RIGRFEAASGGTLFLDEI 247 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 GE+PL Q +LLR L+E+++ R+G ++PV V+VR++SA+ LE+++ GRFR DLF+R+ Sbjct: 248 GELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFREDLFFRI 307 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA-SETVLLHYD---W 444 + + + LPPLR+R+ D+ LA SFL+ F+ + ++ S+ VL +D W Sbjct: 308 NTVAICLPPLRKRLEDVPILAASFLQ--------EFAEERKLEIEGFSDEVLEVFDAHPW 359 Query: 445 PGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQALEK 503 GN+RELRN++ER LF D P M+ +RE+A +++T +A+EK Sbjct: 360 TGNVRELRNVVERAVLFCRGSKVEVDDIPVSMR----GRSRETALEGRDKVMTMHEAVEK 415 Query: 504 ------------FNGDKTAAANYLGISRTTFWRRLK 527 G + AA+ LG+SR T W ++K Sbjct: 416 AEVRAIRAALASTGGRRADAADLLGVSRKTLWEKIK 451 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/329 (40%), Positives = 192/329 (58%), Gaps = 40/329 (12%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++G SP M+ + ++I A A VL+ GETGTGKEL A+AIH A + + Sbjct: 143 LIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIH--------AASPRNNAL 194 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FVAVNC AI +LE+ELFG+E+GAFTG+ + R G FE+A GGTLFLDE+ EMP+ LQ Sbjct: 195 FVAVNCAAIPHEMLESELFGHEKGAFTGAVKE-RIGKFELADGGTLFLDEVTEMPMQLQA 253 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLR L+E + R+GG++P+ VD+RV++AT+ N + ++ G+ R DL+YRL++ R+ LP Sbjct: 254 KLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDLYYRLNVFRIDLPA 313 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 L+ R +DI LA FL +SA Q +Q VL+ YDWPGN+REL N++ER Sbjct: 314 LKARKSDIELLATHFLAKRRVDISA-------QAVQ----VLMQYDWPGNVRELENVLER 362 Query: 458 LALFLSVEPT-PDLTP--------QFMQLLLPELARESAKTPAPRLLTPQ---------- 498 A+ + P P +F+ ++A+ P L P Sbjct: 363 AAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNAVEQLERQLI 422 Query: 499 -QALEKFNGDKTAAANYLGISRTTFWRRL 526 +AL + NG+K+ AA L IS + W +L Sbjct: 423 AKALAQTNGNKSKAAKLLEISERSLWYKL 451 >UniRef50_D2UGQ5 Probable two-component regulatory system regulatory ntrc transcription regulator protein n=1 Tax=Xanthomonas albilineans RepID=D2UGQ5_XANAL Length = 474 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 129/249 (51%), Positives = 163/249 (65%), Gaps = 13/249 (5%) Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 +++G +P M + + I A++ +VLI GETGTGKEL A A+H E + Sbjct: 145 ELIGDTPAMRALFRAIGRLAQAPLSVLINGETGTGKELVAHALHNE--------SPRARK 196 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PFVA+N AI LLE ELFG+E GAFTG++R G FE A GGTLFLDEIG+MPLPLQ Sbjct: 197 PFVALNTAAIPAELLENELFGHEAGAFTGAQRR-HIGRFEQADGGTLFLDEIGDMPLPLQ 255 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 TRLLRVL E E RVGG + + VDVRVI+ATH +LE ++QGRFR DL +RL ++RLQLP Sbjct: 256 TRLLRVLAENEFFRVGGRELIRVDVRVIAATHQDLEALVEQGRFRADLLHRLDVVRLQLP 315 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 PLRER D+ LAE+FL ++ L P ++ A+ VL Y WPGN+REL N+ Sbjct: 316 PLRERRTDVPQLAENFLAMAARKLDTP----PKRLSPAALAVLRGYAWPGNVRELENVCW 371 Query: 457 RLALFLSVE 465 RLA E Sbjct: 372 RLAALAPAE 380 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 150/360 (41%), Positives = 211/360 (58%), Gaps = 46/360 (12%) Query: 190 LDMTRMSLR------HNTHDAT--RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 LD +M +R H + T R+ L +Y G ++G S + V I A S+A Sbjct: 109 LDELKMVIRQALMVNHLQEEVTFLRSELNKKY--GQIVGNSQAIHDVCGLIEKVADSNAT 166 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VL+ GE+GTGKE+ A +IH+ ++ PFV +NC A+ ESLLE+ELFG+E+G Sbjct: 167 VLVTGESGTGKEITALSIHQ--------LSSRRDKPFVPINCAALPESLLESELFGHEKG 218 Query: 302 AFTGS--RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 359 AFTG+ R+ GR FE+A+ GTLFLDEI EMPL +Q +LLRVL+EKE RVGG + + Sbjct: 219 AFTGAVARKLGR---FELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKI 275 Query: 360 DVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAA 419 DVRVI+AT+ + E +++G FR DLFYRL++L + LPPLRER DI LA F+K Sbjct: 276 DVRVIAATNRDPMECIRKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIK----- 330 Query: 420 LSAPFSAALRQGLQASET-VLLHYDWPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQL 477 F+ + Q + +L+ Y+WPGNIREL+N++ER + L E P P+ +Q Sbjct: 331 ---KFNPSQEQRMSPEAMGLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQ- 386 Query: 478 LLPELARESA-----KTPAPRLLTPQ-------QALEKFNGDKTAAANYLGISRTTFWRR 525 L E+ E+ P + + +ALEK NG++T AA LGI+R+ R Sbjct: 387 KLDEVKNETTHGLIINFPDDGISFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYR 446 >UniRef50_C6PZ60 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ60_9CLOT Length = 531 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 113/246 (45%), Positives = 165/246 (67%), Gaps = 20/246 (8%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 L + G S + Q + A+ + +LI GE+GTGKE+ A+AIH+ +K Sbjct: 271 LDSIKGNSKLINQTKNLATQAAKYESNILILGESGTGKEVFARAIHK--------MSKRK 322 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PF+A+NC AI E+LLE+ELFGYE GAFTG+ +GG+ G FE+A+GGT+FLDE+G++ L Sbjct: 323 DEPFIAINCAAIPENLLESELFGYESGAFTGANKGGKPGKFELANGGTIFLDEVGDLSLH 382 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLRV+E+ ++ RVGG + + +DVR+ISAT+ +LE +++G FR D FYRL ++ + Sbjct: 383 LQPKLLRVIEQGQLERVGGVKSIKLDVRIISATNKDLETMVKKGEFREDFFYRLCVIPIM 442 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA-SETV---LLHYDWPGNIRE 450 +PPLR+R+ DI+ LAE FL ++ L + + SE V LL YDWPGN+RE Sbjct: 443 IPPLRKRLEDIILLAEHFLD--------KYNKKLNKNIVGISEEVKKQLLLYDWPGNVRE 494 Query: 451 LRNMME 456 L N++E Sbjct: 495 LENVVE 500 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 132/318 (41%), Positives = 186/318 (58%), Gaps = 23/318 (7%) Query: 220 GQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 279 G+S + Q A++ A LI GE+GTGKE+ A+AIH +K+ PF+ Sbjct: 147 GKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEICARAIHEA--------SARKNGPFI 198 Query: 280 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRL 339 VNCG+I +L E+ELFGYE G FTG+ + G+AG E A GGTLFLDEIGE+PL +Q +L Sbjct: 199 PVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTLFLDEIGELPLDMQVKL 258 Query: 340 LRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLR 399 LRVL+EK + R+G ++VR I+AT+ ++E+ M++ FR DL+YRL+++++ +PPLR Sbjct: 259 LRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSDLYYRLNVIQITMPPLR 318 Query: 400 ERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLA 459 R DI LA FLK P L + L Y WPGN+RELRN+MER+ Sbjct: 319 VRTDDIPVLARYFLKQFAVQYKMPEPELAPDAL----SFLQAYHWPGNVRELRNLMERMV 374 Query: 460 LFLSVEPTPDLTP--QFMQ--------LLLPELARESAKTPAPRLLTPQQALEKFNGDKT 509 + LS +P D +F Q +PE + ++AL K G+K+ Sbjct: 375 I-LSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENMEKQLIEKALRKAGGNKS 433 Query: 510 AAANYLGISRTTFWRRLK 527 AAA LGISR T +++LK Sbjct: 434 AAAKELGISRVTLYQKLK 451 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77743 Propionate catabolism operon regulatory protein ... 811 0.0 UniRef50_P74839 Propionate catabolism operon regulatory protein ... 731 0.0 UniRef50_A6GNB9 Propionate catabolism operon regulatory protein ... 557 e-157 UniRef50_Q2P7A6 Propionate catabolism regulatory protein n=12 Ta... 534 e-150 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 493 e-138 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_A4ACX8 Propionate catabolism operon regulatory protein ... 492 e-137 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 486 e-136 UniRef50_P26047 Signal-transduction and transcriptional-control ... 481 e-134 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 481 e-134 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 480 e-134 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 479 e-133 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 478 e-133 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 478 e-133 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 478 e-133 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 476 e-133 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 475 e-132 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 474 e-132 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 474 e-132 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 473 e-132 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 473 e-131 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 472 e-131 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 471 e-131 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 471 e-131 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 471 e-131 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 471 e-131 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 470 e-131 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 470 e-131 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 469 e-130 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 469 e-130 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 469 e-130 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 468 e-130 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 468 e-130 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 468 e-130 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 468 e-130 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 468 e-130 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 467 e-130 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 466 e-130 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 466 e-130 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 466 e-129 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 465 e-129 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 465 e-129 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 464 e-129 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 464 e-129 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 464 e-129 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 464 e-129 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 464 e-129 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 464 e-129 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 464 e-129 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 464 e-129 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 464 e-129 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 463 e-129 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 463 e-129 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 463 e-128 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 462 e-128 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 462 e-128 UniRef50_Q6ARB9 Probable two-component system response regulator... 461 e-128 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 461 e-128 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 461 e-128 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 461 e-128 UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus... 460 e-128 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 460 e-128 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 460 e-128 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 460 e-128 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 460 e-128 UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 T... 459 e-127 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 459 e-127 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 458 e-127 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 458 e-127 UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing p... 458 e-127 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 458 e-127 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 458 e-127 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 458 e-127 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 458 e-127 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 457 e-127 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 457 e-127 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 457 e-127 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 456 e-127 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 456 e-127 UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase do... 456 e-127 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 456 e-127 UniRef50_Q3A203 Two component signal transduction response regul... 456 e-126 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 456 e-126 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 456 e-126 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 456 e-126 UniRef50_B2TBW4 Proprionate catabolism activator, Fis family n=7... 455 e-126 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 455 e-126 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 455 e-126 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 455 e-126 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 455 e-126 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 455 e-126 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 454 e-126 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 454 e-126 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 454 e-126 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 454 e-126 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 454 e-126 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 454 e-126 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 454 e-126 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 454 e-126 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 453 e-126 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 453 e-126 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 453 e-126 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 453 e-126 UniRef50_C6PY15 Sigma54 specific transcriptional regulator, Fis ... 453 e-125 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 453 e-125 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 452 e-125 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 452 e-125 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 452 e-125 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 452 e-125 UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC ... 451 e-125 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 451 e-125 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 451 e-125 UniRef50_B2I240 Transcriptional regulator containing PAS, AAA-ty... 451 e-125 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 450 e-125 UniRef50_A8RUM4 Putative uncharacterized protein n=1 Tax=Clostri... 450 e-125 UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevi... 449 e-125 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 449 e-125 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 449 e-125 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 449 e-125 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 449 e-125 UniRef50_C5CLY6 Proprionate catabolism activator, Fis family n=1... 449 e-125 UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum... 449 e-125 UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostri... 449 e-124 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 449 e-124 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 449 e-124 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 449 e-124 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 448 e-124 UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional r... 448 e-124 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 448 e-124 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 448 e-124 UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and A... 448 e-124 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 448 e-124 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 448 e-124 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 447 e-124 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 447 e-124 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 447 e-124 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 447 e-124 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 447 e-124 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 447 e-124 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 447 e-124 UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional r... 446 e-124 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 446 e-123 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 446 e-123 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 446 e-123 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 446 e-123 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 446 e-123 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 446 e-123 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 446 e-123 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 446 e-123 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 445 e-123 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 445 e-123 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 445 e-123 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 445 e-123 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 445 e-123 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 445 e-123 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 444 e-123 UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearot... 444 e-123 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 444 e-123 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 444 e-123 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 444 e-123 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 444 e-123 UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with ... 444 e-123 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 444 e-123 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 444 e-123 UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostri... 444 e-123 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 444 e-123 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 444 e-123 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 443 e-123 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 443 e-123 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 443 e-123 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 443 e-123 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 443 e-123 UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis ... 443 e-122 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 443 e-122 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 443 e-122 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 442 e-122 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 442 e-122 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 442 e-122 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 442 e-122 UniRef50_A8MEE7 Putative sigma54 specific transcriptional regula... 442 e-122 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 442 e-122 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 441 e-122 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 441 e-122 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 441 e-122 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 441 e-122 UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 441 e-122 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 440 e-122 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 440 e-122 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 440 e-122 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 440 e-122 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 440 e-122 UniRef50_Q24RP4 Putative uncharacterized protein n=1 Tax=Desulfi... 439 e-122 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 439 e-121 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 439 e-121 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 439 e-121 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 439 e-121 Sequences not found previously or not previously below threshold: UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 475 e-132 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 475 e-132 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 465 e-129 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 462 e-128 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 458 e-127 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 457 e-127 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 454 e-126 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 454 e-126 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 453 e-126 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 452 e-125 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 451 e-125 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 450 e-125 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 448 e-124 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 447 e-124 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 447 e-124 UniRef50_B0TS74 Putative sigma54 specific transcriptional regula... 446 e-124 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 446 e-124 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 446 e-124 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 446 e-123 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 445 e-123 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 445 e-123 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 445 e-123 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 444 e-123 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 444 e-123 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 444 e-123 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 444 e-123 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 443 e-123 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 443 e-123 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 442 e-122 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 442 e-122 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 442 e-122 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 441 e-122 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 441 e-122 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 441 e-122 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 440 e-122 UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/res... 440 e-122 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 440 e-122 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 440 e-122 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 439 e-122 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 439 e-122 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 439 e-121 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 439 e-121 >UniRef50_P77743 Propionate catabolism operon regulatory protein n=50 Tax=Proteobacteria RepID=PRPR_ECOLI Length = 528 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 528/528 (100%), Positives = 528/528 (100%) Query: 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE 60 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE Sbjct: 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE 60 Query: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV Sbjct: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 Query: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA Sbjct: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 Query: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA Sbjct: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 Query: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE Sbjct: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 Query: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD Sbjct: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 Query: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL Sbjct: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 Query: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP Sbjct: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS Sbjct: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 >UniRef50_P74839 Propionate catabolism operon regulatory protein n=46 Tax=Enterobacteriaceae RepID=PRPR_SALTY Length = 541 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 420/526 (79%), Positives = 455/526 (86%), Gaps = 2/526 (0%) Query: 5 PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDA 64 PR N DKPVIWTVSVTRLFELFRDISLEFDHLA ITPIQLGFEKAVTYIRKKLA ERCDA Sbjct: 8 PRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFEKAVTYIRKKLATERCDA 67 Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK 124 IIAAGSNGAYLKSRLS+PVILIKPSG+DVLQALAKAGKLTSSIG+VTYQETIPAL+AFQK Sbjct: 68 IIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAKAGKLTSSIGIVTYQETIPALLAFQK 127 Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 TF+LRL+QRSY+TEEDARGQINELKANG EAVVGAGLITDLAEEAGMT IFIYSAATVRQ Sbjct: 128 TFHLRLEQRSYVTEEDARGQINELKANGIEAVVGAGLITDLAEEAGMTAIFIYSAATVRQ 187 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 AF DALDMTR++ R + L+TRY LGD+ GQSPQMEQ+RQTI LYARS AAVLI Sbjct: 188 AFHDALDMTRLTRRQRVDYPSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLI 247 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 +GETGTGKELAAQAIH+ +F R RQ K S PFVAVNCGAI ESLLEAELFGYEEGAFT Sbjct: 248 QGETGTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFGYEEGAFT 307 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK VTRVGGHQP+PVDVRVI Sbjct: 308 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVI 367 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 SATHC+L+ ++ QGRFR DLFYRLSILRL LPPLRER ADILPLAESFLK SLAA+ PF Sbjct: 368 SATHCDLDREIMQGRFRPDLFYRLSILRLTLPPLRERQADILPLAESFLKQSLAAMEIPF 427 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR 484 + ++R GL + +LL + WPGNIRELRNMMERLALFLSV+P P L QFM+ LLPEL Sbjct: 428 TESIRHGLTQCQPLLLAWRWPGNIRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMV 487 Query: 485 ESAKTPAPRLL--TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A+ + Q L +F GDKTAAA YLGISRTT WRRLK+ Sbjct: 488 NTAELTPSTVDANALQDVLARFKGDKTAAARYLGISRTTLWRRLKA 533 >UniRef50_A6GNB9 Propionate catabolism operon regulatory protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNB9_9BURK Length = 525 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 207/537 (38%), Positives = 311/537 (57%), Gaps = 39/537 (7%) Query: 17 VSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLK 76 S++ L R+I+ ++ ANI + +E A+ Y R + + D IAAGSNGA+L+ Sbjct: 2 FSISALAGTLREIARDYAGSANIELVPKAYEDALAYARNRYYTDTADVFIAAGSNGAFLQ 61 Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 ++L P+++I+ G+DV+QALA A K ++++G+V+Y+ + L F + F++ L+ R+Y Sbjct: 62 NQLEAPLVIIRTDGFDVMQALASARKASAAVGLVSYEHSFEELEQFARAFDVPLNTRTYR 121 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 T EDAR + EL G + VVG+GL+T++A+E G+ I IYS V +AF +A+ + Sbjct: 122 TPEDARRAVRELAQLGVKVVVGSGLVTEIAQEMGLEAILIYSRQGVVKAFEEAIRLASA- 180 Query: 197 LRHNTHDATRNALRTRYVLG-DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + RN+ Y D++G S +E++R TI L +VLI+GETG GKEL Sbjct: 181 --KASGGVRRNSQAYTYHNEQDLIGNSKAVEKLRNTIRLCGSIDFSVLIQGETGVGKELV 238 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 AQ+IH + PFVA+NC ++ ESLLE+ELFGYEEGAF+G+ +GGRAG+F Sbjct: 239 AQSIH--------TSSPRAGKPFVAINCASLTESLLESELFGYEEGAFSGAVKGGRAGMF 290 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E A GGT+FLDEIG+MPL QTRLLR+LE+ V R+G P VD R+++A++ NL++ + Sbjct: 291 ESAQGGTVFLDEIGDMPLAFQTRLLRILEDSTVRRIGSASPRKVDFRLLAASNVNLQQAV 350 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 ++GRFR DL++RL+ + + +PPLRER DI LA FL+ + +S + + L + Sbjct: 351 EEGRFREDLYFRLNEMLIHIPPLRERTEDIAELAGYFLRTTPVRVSK---SRFDEFLHLA 407 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPT--------PDLTPQFMQLLLPELARESA 487 +L WPGNIR+L+N+ R A+ + E PDL L + Sbjct: 408 LPILQSLPWPGNIRQLKNVCRRAAVMMLQESDLSSWPTWFPDLMVDSQNSALSPGQLKDL 467 Query: 488 KTPAP----------------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 P R ++AL+ G+ A LGISR+T WR KS Sbjct: 468 PGPIDSMNALALAYSRAPKHGRAEIVREALKVVGGEVNKVAEGLGISRSTVWRLGKS 524 >UniRef50_Q2P7A6 Propionate catabolism regulatory protein n=12 Tax=Xanthomonadaceae RepID=Q2P7A6_XANOM Length = 581 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 239/541 (44%), Positives = 328/541 (60%), Gaps = 33/541 (6%) Query: 2 AHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANER 61 A P PVIWTVSV+RL L D+ EFD A I I LGF +AV I +L ER Sbjct: 54 ATPETAGAALPVIWTVSVSRLTGLLADVIPEFDQRARIEQINLGFAEAVEVIGLRLRRER 113 Query: 62 CDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVA 121 CDA++A GSN AYL+SRL++P I+ +G+D+++ALA+A ++ IGVVT+ +P+ A Sbjct: 114 CDALVAGGSNAAYLRSRLALPFAHIQATGFDLMEALARARRIAPRIGVVTHASDVPSFRA 173 Query: 122 FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT 181 FQ +F+L ++ R ++T EDAR I +L+A+G + +VG G+ D AE+AG+ G+ +YSA + Sbjct: 174 FQHSFDLDIEHRRFVTAEDARDCIADLRASGIQVIVGTGMAIDFAEQAGLPGVLLYSADS 233 Query: 182 VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 VRQA A+ + + + +LG+ M QVR+ + LYA + Sbjct: 234 VRQALEQAIALGAAPSTDDLAGRSATRRAR--RADALLGEDSAMLQVRELVQLYAPHAGT 291 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VLI GETGTGKEL A+ +H ++ FVA+NCGAI+ESLLEAELFGY +G Sbjct: 292 VLISGETGTGKELVARQLH---------AGSRRRGRFVAINCGAISESLLEAELFGYSDG 342 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+RRGG GL E A GTLFLDEIGE+P+ LQTRLLRVLEE EV RVG PV VDV Sbjct: 343 AFTGARRGGHTGLIEAAQDGTLFLDEIGELPMALQTRLLRVLEEHEVLRVGATVPVAVDV 402 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 RV++A+ L++ ++QGRFRRDLFYRL+ LR+ LPPLR R +I L + + Sbjct: 403 RVVAASLQELQQLVEQGRFRRDLFYRLAALRIALPPLRSRHDEIALLLAHYFQQ------ 456 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE 481 A+ L + WPGN+RELRN++ERL + +P L+ + ++ PE Sbjct: 457 --LGNIASPLSPAALQRLQQHTWPGNVRELRNLVERLCIHWKSQPHDSLSLEQLERWTPE 514 Query: 482 L----------ARESAKTPAPRLL----TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L RE A RL + AL++ NG++ AA LG+SRTT WR ++ Sbjct: 515 LFDTHFGNREAPRELADLATSRLQVTATAVRAALDRANGNRALAAQALGVSRTTLWRWMQ 574 Query: 528 S 528 + Sbjct: 575 A 575 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 170/540 (31%), Positives = 261/540 (48%), Gaps = 76/540 (14%) Query: 39 ITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALA 98 + L + + + E CDAI+ G N S ++VP + I P+G+D Sbjct: 126 LETYILTQDWNGPKLVDQAVREGCDAIV-GGVNTCSYASSINVPNLFI-PTGHDSFWQGI 183 Query: 99 KAGKLTSSIGVVTYQET--IPALVAFQKTFNLRLDQRSYI--TEEDARGQINELKANGTE 154 A K ++I ++T I L+ K L +D YI AR ++ +E Sbjct: 184 TAAKRAAAISRTEQEKTSRIHVLLNASKEGLLSIDSLRYIRMVNHSARKILHI-----SE 238 Query: 155 AVVGAGLITD----------LAEEAGMTGIFIY----------------SAATVRQAFSD 188 ++ G ++ L + A IF Y S + +F + Sbjct: 239 SITGMKVMDAPFPREFKKLLLEDTACTNEIFKYGDMMLNVTKYPVMVQNSNMGIVVSFQN 298 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 D+ + ++ + + D++G+SP + QT Y+R+ + +L+ G++ Sbjct: 299 ISDIMDLENDIRRKIHSKGHV-AKAHFDDIVGESPAIRSTIQTAQKYSRTDSNILLIGQS 357 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL AQ+IH +K PFVAVNC AI E+LLE+ELFGY GAFTG+++ Sbjct: 358 GTGKELFAQSIHNH--------SMRKDGPFVAVNCAAIPENLLESELFGYTAGAFTGAQK 409 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GG+ G FE+AH GTLFLDEIGE+PL Q +LLR ++E+E+ R+G + + V++R+I+AT+ Sbjct: 410 GGKPGYFELAHNGTLFLDEIGEIPLKFQAKLLRAIQEREIMRLGSDRTISVNIRIIAATN 469 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 NLE+ +++G FR DLFYRL +LR+++P L R DI LA +L Sbjct: 470 RNLEQLVREGEFREDLFYRLDVLRIEIPFLENRREDIPLLARGWLLKHAPG--------- 520 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV-----------------EPTPDLT 471 + + +L +W GNIR+L N+ ERL++ S EP Sbjct: 521 TELSDDACRLLSQAEWNGNIRQLFNICERLSVLCSGSLIAGKDVRNVLPTLPQEPGSPAL 580 Query: 472 PQFMQLLLPELA----RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P + LP A E T +ALE ++ AA LGISR+T WR++K Sbjct: 581 PLPAEPSLPPAAPFRSAEEDSPKDSERETILKALEICRYSRSRAAALLGISRSTLWRKMK 640 Score = 58.6 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 8/193 (4%) Query: 62 CDAIIAAGSNGAYLKS-RLSVPVILIKPSGYDVLQALAKAGK--LTSSIGVVTYQETIPA 118 D II G LKS + +PV+ I D L+ + K + +G++ + Sbjct: 55 ADVIITRGLLAEILKSIQGDIPVVEIAVPATDTLRVVLKCIEAFHARKVGIIASHNMVMG 114 Query: 119 LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS 178 Q ++ L+ + + +++ G +A+VG A + +FI + Sbjct: 115 AAEIQDFLDIPLETYILTQDWNGPKLVDQAVREGCDAIVGGVNTCSYASSINVPNLFIPT 174 Query: 179 AATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS 238 A R +R + +L + I + S Sbjct: 175 GHDSFWQGITAAKRAAAISRTEQEKTSRIHVLLNASKEGLLSIDS-----LRYIRMVNHS 229 Query: 239 SAAVLIEGETGTG 251 + +L E+ TG Sbjct: 230 ARKILHISESITG 242 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 145/354 (40%), Positives = 208/354 (58%), Gaps = 22/354 (6%) Query: 185 AFSDALDMTRMSLRHNTHDATRNALRT------RYVLGDMLGQSPQMEQVRQTILLYARS 238 + + + + R + + DM+GQ P + L A + Sbjct: 297 PIYEKKERIGSMIIVKEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIEKMNEARLAAAT 356 Query: 239 SAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 298 + VLI GE+GTGKE+ AQAIH E +++ PF+A+NCG I LL +ELFGY Sbjct: 357 DSNVLILGESGTGKEMVAQAIHNE--------SKRRNKPFIAINCGGIPRDLLGSELFGY 408 Query: 299 EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVP 358 +GAFTG+++GG AG FE+A+GGTLFLDEIGEM L +Q LLRV++EKEV R+GGH+ +P Sbjct: 409 VDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIP 468 Query: 359 VDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA 418 VDVR+I+AT+ +L ++Q+G FR DLF+RL+++ + LPPLRER DI L F++ Sbjct: 469 VDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAH 528 Query: 419 ALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS--VEPTPDLTPQFMQ 476 PF L+A L+ YDWPGNIREL+NM+ER+ + V DL + Q Sbjct: 529 KRDKPFPEIRSDFLEA----LMQYDWPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFQ 584 Query: 477 LLLPELARESAKTPAPRL--LTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 RE+ + + +AL++ NG+ + AA YLGISR+TF+R++ Sbjct: 585 PSCSSQVRENVDISRNEIKKQSIIEALKQCNGNISKAARYLGISRSTFYRQMDK 638 >UniRef50_A4ACX8 Propionate catabolism operon regulatory protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4ACX8_9GAMM Length = 533 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 180/528 (34%), Positives = 273/528 (51%), Gaps = 29/528 (5%) Query: 9 DDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA 68 ++ I + + EL + ++ A + ++ +V Y + + D + +A Sbjct: 2 SNRARILLIGYRKFSELINAVLPDYRDEAEVIIVESVASGSVDYHA-LVKEHKPDVVASA 60 Query: 69 GSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPA----LVAFQK 124 GSN A+L++ L +PVI + D++ A+A+A ++ + V TY + A Sbjct: 61 GSNAAFLQNALKLPVIAQPVTDTDIVDAVARARRIGQRVHVFTYAAKAESEGRLFQALPS 120 Query: 125 TFNLRLDQRSYITEEDARGQINELKANG-TEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 L SY T ++A ++ + A G T+ VVG I +LA G+ + IYS + R Sbjct: 121 LLGESLAHDSYTTTDEASEKLLAMAAAGNTDVVVGPSYICELAARRGLPAVLIYSRESAR 180 Query: 184 QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVL 243 +AL + D R++ + + SPQM +V + YA SAAVL Sbjct: 181 AMLDEAL------RQARARDPGRDSGGSPGRF---VIDSPQMSRVAELARTYALGSAAVL 231 Query: 244 IEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 303 ++GE+GTGKE A+ IH+ + VA+NCG+I L E+ELFGY +GAF Sbjct: 232 LQGESGTGKEHIAREIHQA--------SDYRDGALVAINCGSIPNELFESELFGYVDGAF 283 Query: 304 TGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363 T SRRGGR GL E A+GG L+LDE+GEMPL Q +LLRVL+E+ V VGG + + +D +V Sbjct: 284 TSSRRGGRVGLVEQANGGVLYLDEVGEMPLAQQVKLLRVLQERSVRPVGGTRELSLDFKV 343 Query: 364 ISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAP 423 I+AT+C+L+E ++ G+FR DL+YRL++ L+LPPLRER D+ +AE +L Sbjct: 344 IAATNCDLQEAVEAGQFRDDLYYRLNVFTLRLPPLRERPEDVSAIAEHYLAEYARQYDVE 403 Query: 424 FSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELA 483 + + + Y WPGN+REL+N ERLA+ + + + L + Sbjct: 404 LD--VPTLMARLKAPFEQYRWPGNVRELQNFAERLAVNAAHGASIEELRLEELLPELSVP 461 Query: 484 RESAKTP----APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R A A+ + GDKTA + LGIS TT WRRLK Sbjct: 462 RGEATPAGLLKEQECRAIADAMRRLGGDKTAVSKELGISPTTLWRRLK 509 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 138/405 (34%), Positives = 217/405 (53%), Gaps = 30/405 (7%) Query: 140 DARGQINELKANGTE---AVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTR 194 D G + L+ + + V+ + EA G F Y V+ + + Sbjct: 65 DGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIK 124 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + + L+ +Y + +G SPQ+++V + I A + + VLI GE+GTGKEL Sbjct: 125 FKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKEL 184 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH ++ P V +NCGAI E LLE+ELFG+E+GAFTG+ + R G Sbjct: 185 IARAIHY--------NSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKT-RIGR 235 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A+GGT+FLDEIG+M LQ +LLRV++E+ R+G + + VD+R+++AT+ +L E Sbjct: 236 FEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEA 295 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +++ FR DL+YRL+++ +++PPLR+R +DI L + F+ A P +++ QA Sbjct: 296 VEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERP----VKRISQA 351 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLT----------PQFMQLLLPEL 482 + L+ + WPGN+REL N++ER+ + S + DL P+ L Sbjct: 352 AMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGG 411 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R QALE+ N KT AA L I+RTT ++K Sbjct: 412 IRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMK 456 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 146/396 (36%), Positives = 211/396 (53%), Gaps = 17/396 (4%) Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMT 193 IT D Q+ ++ A A +A G F Y V + ++ Sbjct: 61 ITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVF 120 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 S + R LR RY LG+M+G+S M+++ I A+ A VL+ GETGTGKE Sbjct: 121 ERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKE 180 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+ IH + PFV ++C A+ E+LLE+ELFG+ GAFTG+ + G Sbjct: 181 LVARGIHYAGQEE--------NLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQ-KKG 231 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 E+AHGGTLFLDEIGE+PL LQ + LR L+EKE+ R+G + VDVR+I+AT+ +LE Sbjct: 232 QIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEA 291 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 ++ G++R DLFYRL+++ +++PPLRER DI PL FL A +A A++ Sbjct: 292 EIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFL----AKYNAQNGKAIQGMTG 347 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD--LTPQFMQLLLPELARESAKTPA 491 V + YDWPGN+REL N++ER + + L P+ + P + + Sbjct: 348 EVMEVFMAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVNLME 407 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q LEK +++AAA LGISR ++K Sbjct: 408 MEKRLIVQTLEKTEQNQSAAARELGISRKQLRTKMK 443 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 132/321 (41%), Positives = 192/321 (59%), Gaps = 16/321 (4%) Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +Y D++GQS M+++++ I + S + VLI+GE+GTGKEL AQ+IH Sbjct: 318 KYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHN--------NS 369 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 ++S FVA+NCGAI +SL+E+ELFGYEEGAFTG++RGG G FE+A+ GTLFLDEIGEM Sbjct: 370 NRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGEM 429 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q LLRVL+E +TR+GG++ V VDVR+I+AT+ NL+++++ G FR DL+YRLS++ Sbjct: 430 PLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSVI 489 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +PPLRER DI L E FLK+ L + + + LL Y WPGN+REL Sbjct: 490 PIYVPPLRERNGDIGILIEHFLKIKADKLGK----LIPEIRKNIYENLLSYGWPGNVREL 545 Query: 452 RNMMERLALFLSVE----PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGD 507 N +E + + L + + + G+ Sbjct: 546 ENCIENIVNMNGNTSFNFENRTIKKDVNCYSDVSLEYDMCSLEELEKRAISICINQCGGN 605 Query: 508 KTAAANYLGISRTTFWRRLKS 528 + A LGI+R+T + ++K Sbjct: 606 ISKACRILGINRSTLYIKIKK 626 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 161/460 (35%), Positives = 240/460 (52%), Gaps = 60/460 (13%) Query: 114 ETIPALVAFQKTFNLRLDQRSYITEEDA-------RGQINELKANGTEAVVGAGLITDLA 166 I L++F L +D + YI ++ R QI + + TE V A L+ + Sbjct: 18 REIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHVTEFVQSASLLQYIK 77 Query: 167 EEAGMTG--IFIYSAATVRQAFSDALDMTRMSLRHN------------THDATRNALRTR 212 + T + I SA R FS L ++ + + TR Sbjct: 78 QGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEGAILFLTKPILLQEQEQSSRYGTR 137 Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 + L D++G SP + +++ ++ A+S + VLI GE+GTGKE+ AQ+IHR Sbjct: 138 FSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHR--------LSH 189 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 + PFVA+NC AI E+LLE+ELFGYEEGAFTG+++GG+ G FE+A GGTLFLDEIG+MP Sbjct: 190 RNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMP 249 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 L LQ +LLRVL+E+ + RVGG + + VDVR+I+ATH +LE + +FR DL++RL+++ Sbjct: 250 LYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIP 309 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L +PPLRER D+ L + ++ L Q L+ Y WPGNIREL Sbjct: 310 LYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFD----YHWPGNIRELE 365 Query: 453 NMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ-------------- 498 NM+E + ++E +T + + E++++ + PQ Sbjct: 366 NMVEYIV---NLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINE 422 Query: 499 -------QALEKFNGD---KTAAANYLGISRTTFWRRLKS 528 QAL++F K AA LGIS T +R+L+ Sbjct: 423 VEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 158/464 (34%), Positives = 241/464 (51%), Gaps = 35/464 (7%) Query: 77 SRLSVPVILIKPSGYDVL--QALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRS 134 + VPVIL+ G + +A A K++ + + K + Sbjct: 20 DVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAI---GRPAVEVDHNSKWPVVLKS--- 73 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDL--AEEAGMTGIFIYSAATVRQAFSDALDM 192 E D + ++ G +AVV I D E G G+ ++ + +D + Sbjct: 74 --GEFDIAKK-HKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDLADKNKL 130 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 L H R T+Y ++ S +ME +Q AR+ VLI GE+G GK Sbjct: 131 LEKKLDHYK-QRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGK 189 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 E+ AQAIH E + HPF+ VNC AI E+LLE+ELFGY+ GAFTG+ + G+ Sbjct: 190 EIFAQAIHNE--------SHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKP 241 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G FE+A GTLF DEIG+MP +Q +LLRV++E EV R+GG + VDVR+I+AT+ NLE Sbjct: 242 GKFELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLE 301 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E + FR DLFYR+++L L +PPL++R DI LAE FL + + +Q Sbjct: 302 ELVATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMG-----ENKQIS 356 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFMQLLLPELARESAKTP 490 Q + VL YDWPGNIR+L+N+++RLA+ +V D+ + ++ L + + Sbjct: 357 QEAVEVLQKYDWPGNIRQLKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEG 416 Query: 491 APRLLT------PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ ++ LE ++ +K+ AA+ L I R+T +R++K Sbjct: 417 LNEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKK 460 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 135/403 (33%), Positives = 219/403 (54%), Gaps = 33/403 (8%) Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 G+I ++K G E V I + E G+ G ++ +A ++ LD L + Sbjct: 189 GEIQKIK--GCEMVATRVPIYEEGEIVGVLGKVLFRDIKEVKALAERLDAATNELDYYKG 246 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + R ++Y +++G S ++ + ++ + ++S + VLI GE+GTGKEL A AIH Sbjct: 247 E-VRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGTGKELFAHAIHDG 305 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 ++ F+ VNC AI E+LLEAELFGYE+GAFTG+ + G+ G FE+A+GGT Sbjct: 306 --------SLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTGANKEGKPGKFELANGGT 357 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIG+MP +Q +LLR L+E+EV R+G + + +DVR+I++T+ NLE+ + Q +FR Sbjct: 358 IFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRNLEQLIAQDKFRE 417 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL++ + +PPLRE D+ L +K L+ + + +L Y Sbjct: 418 DLYYRLNVFNINVPPLREMKDDLEKLINFIIK----DLNDEMGLNVNGVSSEANKILNSY 473 Query: 443 DWPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQLLLPELARESAKTP----------- 490 WPGNIREL+N++ER + + T D PQ++ +++ Sbjct: 474 HWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEEQQNNSNSKSHEINLHNLE 533 Query: 491 ------APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + AL++ N +K AA L I R+ +++L+ Sbjct: 534 LRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSGLYKKLE 576 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 132/381 (34%), Positives = 220/381 (57%), Gaps = 19/381 (4%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 G + ++ I + G ++ + + F+ + +L + + + Sbjct: 330 KGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAKMFAKKVMRLEENLAYYKEELGKFH-S 388 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +++V D++G+SP+M++ + +++++ +LI GE+GTGKE+ + AIH+ Sbjct: 389 SQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKS-------- 440 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + + P++ VNC A+ E LLE+ELFGY+EGAFTG+R+GG+ G FE+A GT+FLDEIG+ Sbjct: 441 SIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGD 500 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 M L +Q +LLRVL+E+E+ R+GG +P+ VDVR+I+AT+ +L + + + +FR DL+YRL++ Sbjct: 501 MSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNV 560 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 L + LPPLRER DI +A ++ ++ ++ S T L YDWPGNIRE Sbjct: 561 LTIDLPPLRERKEDIGFIARGLIE----KINKRLGTDIQGVRPESITHLCAYDWPGNIRE 616 Query: 451 LRNMMERLALFLS---VEPTPDLTPQFMQLLL--PELARESAKTPAPRLLTPQQALEKFN 505 L N++ER + + P P M+ + E E A A R + + L + Sbjct: 617 LENILERAIVICDEAWILPKHLALPGVMETITLGAEQTLEYALQAAEREILD-KTLRRVQ 675 Query: 506 GDKTAAANYLGISRTTFWRRL 526 G+K AA LGI R+ +++L Sbjct: 676 GNKVQAARILGIHRSVLYKKL 696 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 151/455 (33%), Positives = 235/455 (51%), Gaps = 37/455 (8%) Query: 93 VLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA--RGQINELKA 150 +L ++ +A ++ GV+ Y AF + + +R +A G + + Sbjct: 124 ILNSMQEAIEVADINGVIKYVNP-----AFSRITGIPEKERIGQNIFEASPDGALATVLK 178 Query: 151 NGTEAV-----VGAGLITDLAEEAGMTGI-FIYSAATVRQAFSDALDMTR-----MSLRH 199 G VG ++ A + + A V Q F+D +++ ++ Sbjct: 179 TGKVVFGQRTKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDIMNLMEELKKSTTIIE 238 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 N D ++Y D++G SP++ + A+S++ VLI GE+GTGKEL A AI Sbjct: 239 NLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKELLAHAI 298 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A ++ +PF+ VNC AI ++LLE+E FGY +GAFTG+ + + G FE+AH Sbjct: 299 H--------AASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKS-KIGKFELAH 349 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+FLDEIG+M L LQ +LLRVL+E E RVGG+Q + VDVRVI+AT+ NL E ++QGR Sbjct: 350 GGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLRELIRQGR 409 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + +PPLR R D+ L + +L+ ++ + +E VL Sbjct: 410 FREDLYYRLNVVEITMPPLRARKEDLPALVSHLI----TSLNRKLGKNVKGISKDAEEVL 465 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPD---LTPQFMQLLLPELARESAKTPAPRLLT 496 YDWPGN+REL N++ER+ + E + + E + + Sbjct: 466 FSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQFRMSSERDVDLMPIEQMEEML 525 Query: 497 PQQALEKFNG---DKTAAANYLGISRTTFWRRLKS 528 ++A+ KF K AA L IS T + +LK Sbjct: 526 IRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 156/465 (33%), Positives = 231/465 (49%), Gaps = 42/465 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK------TFNLRLDQRSYIT 137 IL+ + AL K V T L +K +L++ + + Sbjct: 7 ILVIDDEEHMCWALEKGLMQEGYQ-VFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGL- 64 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 + + +L ++ A D A EA G Y + + + Sbjct: 65 --EVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMV 122 Query: 198 RHNTHDAT--RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 H + T R+ L +Y G ++G S + V I A S+A VL+ GE+GTGKE+ Sbjct: 123 NHLQEEVTFLRSELNKKY--GQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEIT 180 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A +IH+ ++ PFV +NC A+ ESLLE+ELFG+E+GAFTG+ + G F Sbjct: 181 ALSIHQ--------LSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAV-ARKLGRF 231 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A+ GTLFLDEI EMPL +Q +LLRVL+EKE RVGG + +DVRVI+AT+ + E + Sbjct: 232 ELANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECI 291 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 ++G FR DLFYRL++L + LPPLRER DI LA F+K + ++ + Sbjct: 292 RKGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFN-------PSQEQRMSPEA 344 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSV-EPTPDLTPQFMQ-----------LLLPELA 483 +L+ Y+WPGNIREL+N++ER + E P P+ +Q L+ Sbjct: 345 MGLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFP 404 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + +ALEK NG++T AA LGI+R+ R + Sbjct: 405 DDGISFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQK 449 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 144/427 (33%), Positives = 223/427 (52%), Gaps = 23/427 (5%) Query: 114 ETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTG 173 E I L L + + + +I + ++ A D+ A G Sbjct: 36 EAIQILEGSDVDLVLTDMKMPGMDGMELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKG 95 Query: 174 IFIYSAATV--RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQT 231 + Y Q M + +N L RY G+++G+SP M + T Sbjct: 96 AYSYIWKPFQNEQLILFVKQALAMYRVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDT 155 Query: 232 ILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 291 I+ A ++A VLI+GE+GTGKE+ A++IH +K P+VAVNC A+AES+L Sbjct: 156 IVKVAPTNATVLIQGESGTGKEMVAKSIH--------FNSHRKDAPWVAVNCAALAESIL 207 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+ELFG+E+GAFTG+ + G FE+A GGTLFLDEIGE+ LQ +LLRVL+EK RV Sbjct: 208 ESELFGHEKGAFTGAA-AMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERV 266 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 GG +P+ VD+R+I+AT+ +L+++++ FR DLFYRL++L +QLPPLRER DI L + Sbjct: 267 GGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDH 326 Query: 412 FLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--D 469 FL+ + S + +R+ + Y WPGN+REL N++ER + + + D Sbjct: 327 FLQKYASGPSGE--SRVRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVND 384 Query: 470 LTPQFMQLLLPELARESAKTPAP--------RLLTPQQALEKFNGDKTAAANYLGISRTT 521 L + + + L E A ++A+ + ++ AA LGI ++ Sbjct: 385 LPRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSG 444 Query: 522 FWRRLKS 528 +++K Sbjct: 445 LNQKIKK 451 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 139/381 (36%), Positives = 216/381 (56%), Gaps = 16/381 (4%) Query: 148 LKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRN 207 L+ N VV IT G + IY ++ M L + ++ + Sbjct: 309 LEINAKPCVVSTLPITKEGNTKGFV-VKIYEDLDNLADIVQQINRINMQLNYYKNELYK- 366 Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 T Y +G ++ + ++ ++ +L RS++ VLI GE+GTGKEL A +IH Sbjct: 367 VNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNA----- 421 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 ++ PF+ VNC AI L EAELFGYE+GAFTG+R+ G+ G FE+A GT+FLDE Sbjct: 422 ---SNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDE 478 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IG+MPL LQ++LLRV+++KE+ RVGG + VDVR+I+AT+ +L+ + +G FR DL++R Sbjct: 479 IGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFR 538 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 ++++ L++PPLR+R DI LA++F++ L + +A+ L YDWPGN Sbjct: 539 INVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRR----VEGITEAALEALTRYDWPGN 594 Query: 448 IRELRNMMERLALF--LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN 505 IREL N++ER+ + + DL + + A+ + + T Q AL + Sbjct: 595 IRELENIIERMLNYRESGLIELQDLPEEIVGRPGGMAAKATQTLAVMEMETIQAALAEAG 654 Query: 506 GDKTAAANYLGISRTTFWRRL 526 G+K+ AA LGISR+ + +L Sbjct: 655 GNKSKAARLLGISRSKLYEKL 675 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 137/398 (34%), Positives = 218/398 (54%), Gaps = 23/398 (5%) Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 + +D + ++ E+ NG + V I + G I+ + A ++ ++ Sbjct: 186 SADDIKTEVVEI--NGRQVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSE 243 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 L + ++ T+ + ++ ++G P + ++++ I A + VLI GE+GTGKEL A Sbjct: 244 LSYYKNELTKYTSK-QFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVA 302 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 A+H E + F+ VNC AI E+L EAELFGY EGAFTG+++GG+ G FE Sbjct: 303 HALHVESG---------RPGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIGKFE 353 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+ GT+FLDEIG+MPL +Q +LLRVL+EKEV R+G + ++VRVI+AT+ NLEE ++ Sbjct: 354 LANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRVIAATNQNLEELIK 413 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + +FR DL+YRL+++ L +P LRER+ D+ L + F++ + + + Sbjct: 414 KKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIE----KFNKEYGTNVTGISPEVM 469 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-------LTPQFMQLLLPELARESAKT 489 + ++Y WPGNIREL N++ER + + L + P + Sbjct: 470 DIFMNYSWPGNIRELENVLERCFNLVEGKVIEKKYLPPYILGEELKNKEFPLGQSLTNLL 529 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 A + AL K G+K+ AAN LGISR +RLK Sbjct: 530 EAYEKELIKAALLKAKGNKSKAANLLGISRQWLHKRLK 567 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 143/476 (30%), Positives = 236/476 (49%), Gaps = 46/476 (9%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY------I 136 + LI + DV+ KA + I + LV K + + ++Y Sbjct: 99 ITLIDANVIDVMYEELKAKEKNLKILSFILELAYDGLVVIDKYGYITMINKTYADFLGVD 158 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS--------------AATV 182 E + E+ + +V I + A+ + G ++ + A V Sbjct: 159 QERSIGKHVTEVIESTRMHIVAKTGIAETAQLQKVKGKYMIANRIPVIENGELVAVAGKV 218 Query: 183 RQAFSDALDMTRMSLRHNTHDATR------NALRTRYVLGDMLGQSPQMEQVRQTILLYA 236 LD+ +R+ ++ + + Y +++G+S ++ + + A Sbjct: 219 LFKNIKELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAA 278 Query: 237 RSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELF 296 ++++ VLI GE+GTGKEL A AIH E + F+ +NC AI LLE+ELF Sbjct: 279 KTNSNVLIRGESGTGKELFAHAIHME--------SERVYGNFIKLNCAAIPRDLLESELF 330 Query: 297 GYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQP 356 GYE GAFTG+++ G+ G FE+A GGT+FLDEIG+MPL +Q +LLRVL+E+EV R+G + Sbjct: 331 GYEGGAFTGAKKEGKIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRS 390 Query: 357 VPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVS 416 +DVRVISAT+ +LE+ +++G FR DL+YRL+++ + +PPLRER DI L+E L+ Sbjct: 391 KKIDVRVISATNRDLEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKI 450 Query: 417 LAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQ 476 L + + + + L++Y W G +R+L N++ER VE + P+ Sbjct: 451 SKKLGKK----TKSFSKEAMSCLMNYKWEGGVRQLENIIERAVNL--VEHNEMIEPKHFP 504 Query: 477 LLLPELARESAKTPAPRLL------TPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + +L+ + L N +KT AA L ISRT+ + ++ Sbjct: 505 GNIVSNKYIVEDSDLNKLINQVEKDIILETLIYCNWNKTLAAKKLNISRTSLYEKI 560 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 149/432 (34%), Positives = 224/432 (51%), Gaps = 30/432 (6%) Query: 109 VVTYQETIPALVAFQKTFNLRLDQRSYITEED-------ARGQINE-LKANGTEAVVGAG 160 V+T + L+ + + I E + + QI E L+ G EAVV Sbjct: 169 VITLNKAYAELIDINPEDAIGRHIKEVIPETELHLVSQTGKTQIGEVLRVKGREAVVMRY 228 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLG 220 I G ++ V Q + A T S + RY + +++G Sbjct: 229 PINKDGRIIGAVSKVMF--RDVNQFITSAK--TVYSSQRRIKGEPEQWASARYTVDNLIG 284 Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 +S M ++++T+ A + VLI GE+GTGKEL A ++H + PFV Sbjct: 285 KSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLH--------VGSNRCLGPFVK 336 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 VNC A+ E+LLE+ELFGY EGAFTG+++GG+ G FE A+GGT+FLDEIG+MPL +Q +LL Sbjct: 337 VNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLL 396 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RVL+EKE+ R+G ++ V+VRV++AT+ LE+ + FR DL+YRL+++ LQ+P LRE Sbjct: 397 RVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRE 456 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R+ D+ L E FL A + F + + + +Y+WPGN+REL N++ER Sbjct: 457 RIDDLKDLVEYFL----AKYNHAFGLNITGLSADALELFENYNWPGNVRELENVVERAFN 512 Query: 461 FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ------ALEKFNGDKTAAANY 514 + + + R S P LL + AL NG+K AA Sbjct: 513 LVDGHIIDVMHLPPYLQKFGKSKRHSINKSLPSLLEQVEKEAIADALSVTNGNKMQAAKI 572 Query: 515 LGISRTTFWRRL 526 LGISR ++++ Sbjct: 573 LGISRAWLYKKI 584 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 130/402 (32%), Positives = 207/402 (51%), Gaps = 34/402 (8%) Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 +E+ + I + E AG D + G G + + + Sbjct: 212 SEKYNKNIIKMVYGGKIEDADMAGYFYDNTDAVGYIGGSSFERIPSERIIKSVTHEFKNF 271 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + N + +M+GQS M+++ + I A + +++ GE+GTGKEL Sbjct: 272 NKLN---------NDKIGFKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKELVV 322 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H ++ +PFV VNC A+ + +LE+ELFG+E+GAFTG+ + R G FE Sbjct: 323 RALHYGGE--------RRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKK-RVGRFE 373 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +AH GTLFLDEIG+M L +Q + LR+++++E RVGG++ + VDVR+I AT+ +L+++++ Sbjct: 374 LAHKGTLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVK 433 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +GRFR DL+YRL+ + L +PPLRER DI L FLK F + Sbjct: 434 EGRFREDLYYRLNTITLYVPPLRERKEDIPFLIHHFLK----EKGKKFDKIAPKISPEVF 489 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP-----------DLTPQFMQLLLPELARE 485 L+ YDWPGN+REL N MER + + + + + P +E Sbjct: 490 DALMEYDWPGNVRELENAMERAIILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKE 549 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R + +ALEK + ++T + LGISR T + ++K Sbjct: 550 ITIRNMEREIII-EALEKCDWNRTKTSKSLGISRRTLYNKMK 590 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 141/400 (35%), Positives = 224/400 (56%), Gaps = 33/400 (8%) Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 R Q++ L+ G VV I G G+ I+ + + D +++ Sbjct: 231 RNQVHRLQ--GQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKILERFDQKDGAVKPLF 288 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + + D+LG+S + + ++ ARS A+VLI GE+G GKE A+AIH Sbjct: 289 SKPKKKQI----HFEDILGESQPISETKKMARKAARSKASVLITGESGVGKEQFARAIHG 344 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + PF++VNC AI ++LLE+ELFGY EGAFTG+++ G+AG FE+A+ G Sbjct: 345 AGVTN--------NGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANHG 396 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+M L Q ++LRVL+E+E+ R+GG P+PVD R+I+AT+ +L++ +++G FR Sbjct: 397 TLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTFR 456 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL++RL ++ +Q+PPLR R DI + E L+ +A ++ L+ ++ H Sbjct: 457 EDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLR----LMFH 512 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTP--DLTPQF------MQLLLPELARESAKTPAPR 493 Y+WPGN+REL N++ERL DL +F + L+P + AK A + Sbjct: 513 YNWPGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQSLPAKQEAMK 572 Query: 494 LL-------TPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++ ++ L++ G+K+ AA LGISR T + +L Sbjct: 573 VVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKL 612 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 160/542 (29%), Positives = 251/542 (46%), Gaps = 93/542 (17%) Query: 67 AAGSNGAYLKSRLSVPVILIKPSGYDVLQA---------LAKAGKLTSSIGVVTY----- 112 A G+N L + L P+ L+ P Y+ + G+L + V + Sbjct: 157 ATGTNAINLAAVLGRPIQLVGPEHYNAQLQYWTCSAAPIFDENGELLGVVNVAGHYLKVH 216 Query: 113 QETIPALVAFQKTFNLRLDQRSYITEEDARGQ----INELKANGTEAVVGAGLITDLAEE 168 Q T+ VA K L Q E++ G+ I + + G A+ G G IT L Sbjct: 217 QHTLGMTVALGKAIEFSLRQSRLRREKELAGKYIESIVDSISEGLVALDGQGRITVLNRT 276 Query: 169 AGMTG-------------IFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNA------- 208 AG + +TV +AF + L N + R A Sbjct: 277 AGELLGLKPQDVLNQPADAVLGQHSTVVEAFRSGEALLNRELVFNCKNKQRTAIGNVVPV 336 Query: 209 ---------------------------LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 + + D+ G P+ QV A + Sbjct: 337 ANNRANGVLAVFKGLSHARGFVKNMAGFKAYFNFEDLKGSGPRFAQVVNLARQAAALPSN 396 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VLI GE+GTGKE+ AQAIH + PFV +NC AI L+E+ELFGYE G Sbjct: 397 VLILGESGTGKEMFAQAIHNA--------SSSSNGPFVGINCAAIPAELIESELFGYEGG 448 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG++R G+ G F++A GTLFLDE+ M + +Q +LLRVL+ + TR+GG +P++ Sbjct: 449 AFTGAKREGQPGKFQLAAHGTLFLDEVNAMSMTMQAKLLRVLQNRCFTRIGGCVEIPLEA 508 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 R+I+A++ +L E+++QG FR DL YRL+++ +++PPLRER D++ L E F + L Sbjct: 509 RIIAASNKDLWEEVRQGNFREDLLYRLNVVTIEIPPLRERKDDLVHLIEHFCREHSKKLK 568 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL------SVEPTPDLTPQFM 475 F+ + + +++ Y WPGN+REL N++ER A+ S+E L+ + Sbjct: 569 FEFT-----ISEPARKLMMAYHWPGNVRELENVIERCAVMALSRSSHSIEEQDLLSYPGI 623 Query: 476 QLLLPELARESAKTPAPRL---------LTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + L + + P P+ ++AL++ G+ T AA LG++R T +R++ Sbjct: 624 RKSLEADKNPAVEVPPPQFDDNLESLEKRAVEEALKQTGGNITRAAGRLGVTRKTLYRKI 683 Query: 527 KS 528 K Sbjct: 684 KK 685 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 142/406 (34%), Positives = 220/406 (54%), Gaps = 18/406 (4%) Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 L+LDQ + +A + + NG + +V I + G G ++ Sbjct: 288 MPQLKLDQVF---KTEAAEVSDLHERNGIKYIVHRIPIKKEGKVIGAIGKVMFRQLNEVS 344 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 A L H + + R+ +L + P M++++++ A+ + VLI Sbjct: 345 ALFKRLQKAESKASFY-HQQLQKSETARFTWDHILSKHPYMDKLKKSAAKAAKGRSTVLI 403 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 GE+GTGKEL A AIH + FV VNC AI E LLE+E FGY+EGAFT Sbjct: 404 RGESGTGKELFAHAIHNS--------SARSDGKFVIVNCAAIPEDLLESEFFGYDEGAFT 455 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 G+++ G+ G F++A+GGTLFLDEIG+M + LQ +LLRVL+E+E RVGG+ + VDVR+I Sbjct: 456 GAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRII 515 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 +AT+ +LE+ +++G FR DL+YRL+++ L++PPLRER+ D E + L++ Sbjct: 516 AATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHD----VEYLTSQLMIELNSML 571 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPEL 482 ++ ++ LL Y+WPGN+REL+N++ER F DL + L Sbjct: 572 GTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVEDLPDYLIDQLTIPK 631 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ L ++AL + NG+K AA LGISR+ + +LK Sbjct: 632 KEKNGLAEDAELEAIRKALTQANGNKAQAARLLGISRSGLYEKLKK 677 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 131/400 (32%), Positives = 212/400 (53%), Gaps = 25/400 (6%) Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 +++ RG ++ G ++ + + D + G + V+ T++ Sbjct: 191 EKKEVRGLYHQ-PCEGAHVLINSAPVFDSGKVIGGLAVEKDITEIVQLNQELNKASTQVK 249 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 L R ++G+S ++++ + + A VL+ GE+GTGKEL A Sbjct: 250 L---LEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLA 306 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH+ + +PF+ VNCGAI +L E+ELFGYE GAFTG+ R G+ G+FE Sbjct: 307 RAIHQ--------NSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGMFE 358 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+GGTLFLDE+GEMP+ +Q +LLRVL+E RVGG Q V V+VRV++ATH NLE+ + Sbjct: 359 LANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMIN 418 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + +FR DL+YRL+++ L++PPLR+R DI L F++ +++ A Sbjct: 419 RRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDK----NIKKIEPAVM 474 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQL--------LLPELARESA 487 T L Y WPGN+REL+N +ERL + + + P+ ++ + Sbjct: 475 TAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRNTYISLVTSPVSQGKLMN 534 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L++ G+++ AA LGI R+T + +L+ Sbjct: 535 VAVEAEKQLILKTLQQVRGNRSEAARVLGIPRSTLYYKLR 574 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 164/459 (35%), Positives = 241/459 (52%), Gaps = 45/459 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 +L+K GY+V A QE + AL++F+ L Q +T +A Sbjct: 20 LLLKEDGYEVQTA-------------ANGQEAVDALLSFRPDVILLDQQMPVLTGVEALE 66 Query: 144 QINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHD 203 +I L N + A LA +A G + + L ++ H Sbjct: 67 KIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDN--DKLLLTVSRAVEHCRMK 124 Query: 204 ATRNALRTRYVLGD----MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 L+ + LGD ++G+ + QV + A + A VLI GE+GTGKEL A AI Sbjct: 125 GEIKHLKNK--LGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAI 182 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H R + S PFVA+NCGAI +L+E+ELFG+E+GAFT + + +AG FE A+ Sbjct: 183 HD--------RSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDA-KETQAGTFERAN 233 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+PL Q +LLRVLEE+++TR+GG + +PV+VR+++AT+ NLEE+++ G+ Sbjct: 234 GGTLFLDEIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGK 293 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL YRL++ +QLPPLRER DI LA FL+ + L+ + + + L Sbjct: 294 FRLDLLYRLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQ----L 349 Query: 440 LHYDWPGNIRELRNMMERLALFL-SVEPTPDLTP------QFMQLLLPELARESAKTPAP 492 YDWPGN+R+L N ++ + + P P Q +L P+ A E Sbjct: 350 CAYDWPGNVRDLENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDT 409 Query: 493 RLLTPQQ----ALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + AL+K N ++T A L ISR T + ++K Sbjct: 410 NSLAEKARILSALQKHNYNRTLTAEALNISRKTLFNKMK 448 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 132/357 (36%), Positives = 198/357 (55%), Gaps = 17/357 (4%) Query: 175 FIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTR---YVLGDMLGQSPQMEQVRQT 231 SA + + + M N + + Y ++G+ ++ Sbjct: 276 CTLSAYPILDESKNLQGIVCMIREIKKMRRLVNKMIGKQALYTFDKIIGRDENFIRMVNY 335 Query: 232 ILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 291 + S + VLI GE+GTGKE+ AQ+IH ++ PFVA+NCGA+ +L+ Sbjct: 336 AKKISDSPSTVLIMGESGTGKEVFAQSIHNH--------SERRDEPFVAINCGALPRNLI 387 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+ELFGYE+GAFTG++RGG G FE+A GGTLFLDEIGEMPL +Q LLRVLEE ++ RV Sbjct: 388 ESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDEIGEMPLDMQANLLRVLEEGKLFRV 447 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 GG++ + VDVR+I+AT+ +L +++++ FR DL+YRL++L L LPPLRER +DI L + Sbjct: 448 GGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNVLPLILPPLRERKSDIPLLIDY 507 Query: 412 FLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF--LSVEPTPD 469 F+ + L + R + +++Y W GNIREL N++E L L+ + Sbjct: 508 FMTIKALKLKKSMTYLPRDIMDQ----MINYTWRGNIRELENVIENLMNSGELNFLERVE 563 Query: 470 LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L+ + + ES Q L K+ G+ + AA LGI R T +R++ Sbjct: 564 LSSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKM 620 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 221/416 (53%), Gaps = 31/416 (7%) Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 ++R+ + I + E ++ A T A G F Y + Sbjct: 51 LLDIRMPEMDGI---KVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINL 107 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 + ++ + + R G ++G SP M++V +TI A S VLI Sbjct: 108 DELLSTLEKATTVTEPLVTVGKGEIAPRP--GTLIGCSPAMQEVYKTIGRIADSDVTVLI 165 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 +GE+GTGKEL A+AIH ++ PFV ++C AI E+LLE+ELFG+E+GAFT Sbjct: 166 QGESGTGKELVAEAIHY--------NSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFT 217 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 G+ + G FE+A GGT+FLDEIG++ LQ +LLR L+EK RVGG + VDVR+I Sbjct: 218 GAHTR-KLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRII 276 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 +AT+ +LEE ++ G FR DL+YRL+++ ++LPPLRER DI+ L + F+ +S + F Sbjct: 277 AATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLS----NRKF 332 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPELA 483 + ++ +LL Y+WPGN+RELRN+ ER L TP+ P+++ + Sbjct: 333 GKQVTGLTRSVADILLQYNWPGNVRELRNVCERAVLMARGNVITPESLPEYLLRAVRGRT 392 Query: 484 RESAKTPAPRLL------------TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +L +ALE++ G+KTA A LG+SRTT + ++K Sbjct: 393 EAWHPAEDRGVLPLKEMVAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMK 448 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 144/409 (35%), Positives = 208/409 (50%), Gaps = 30/409 (7%) Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMT 193 ++ + ++ E ++ + A EA G F Y + + Sbjct: 72 VSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAV 131 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 S + R LR +Y +++G S M+ V + + + +LI GE+GTGKE Sbjct: 132 EKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKE 191 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+AIH ++ PFVA+NCGAI LLE+ELFG+ GAFTG+ + G Sbjct: 192 LVAKAIHY--------NGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAV-ADKTG 242 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 F+ AH GT+FLDEIG MPL LQ +LLRVL+E+EV +VG + + +DVRVISAT+CNLEE Sbjct: 243 KFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEE 302 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 +++QGRFR DL+YRL+++ + LPPLRER DI LA FL+ + ++ P + Sbjct: 303 EVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPG--- 359 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLT---------PQFMQLLLPEL 482 + L +Y WPGN+REL N++ER DL + Q+ P L Sbjct: 360 -AMNCLENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRL 418 Query: 483 ARESAKTPAP----RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P + A+ G K AA+ L I RTT ++K Sbjct: 419 TESGMDMPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIK 467 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 140/324 (43%), Positives = 199/324 (61%), Gaps = 20/324 (6%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 R RY +M+G S M++ R +RS + VLI+GE+GTGKEL AQ IH Sbjct: 333 RARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHNA------- 385 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + PFVAVNC AI E+LLE+ELFGYEEG+FTG+++GG+ G E+A+GGTLFLDEIG Sbjct: 386 -SSRHGQPFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIG 444 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MPL +Q +LLR+L+E+ + RVG + + +DVR+I+ATH NL++ +Q+G FR+DL+YRL+ Sbjct: 445 DMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLN 504 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 +L + +PPLRER+ D+ LA+ + A ++A YDWPGNIR Sbjct: 505 VLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAISSLFMRAC----QSYDWPGNIR 560 Query: 450 ELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ------ALEK 503 EL N++ER + LT + + L EL + A R L + ALE Sbjct: 561 ELENVIERAMNMVDDGDA--LTAEMIDLDPVELPADHAIPDGVRPLKEVEMEMVVRALEM 618 Query: 504 FNGDKTAAANYLGISRTTFWRRLK 527 G+ A++ LGISR T +R++K Sbjct: 619 SRGNIVHASSLLGISRNTIYRKIK 642 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 145/448 (32%), Positives = 222/448 (49%), Gaps = 26/448 (5%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 V+++ GY + + A L + V + + + + + ++ E Sbjct: 137 VVMVDKDGYITMLSKEYAEFLNVRVEDVIGKHATDVIENTR----MHIVAKTGKPEVADL 192 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 +I G + I E G G ++ + + + L+ Sbjct: 193 QRI-----KGDYMIATRVPIIKNGEITGAVGRVLFQNVGGFNSLYKRVKLMETELKKYKG 247 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + R + Y ++G S + + + A S + VL+ GE+GTGKEL A AIH Sbjct: 248 EF-REQNKATYTFHHIVGDSDSIIKAKHQAERAANSDSNVLLLGESGTGKELFAHAIHNA 306 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + FV VNC AI LLE+ELFGYEEG+FTG+++GG+ G FE A GGT Sbjct: 307 G--------SRAPGSFVKVNCAAIPPDLLESELFGYEEGSFTGAKKGGKKGKFEAADGGT 358 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIGE+PL +Q + LRVL+EKEV RVG P+DVRVI+AT+ NLEE + +G FR Sbjct: 359 IFLDEIGELPLHMQVKFLRVLQEKEVERVGSTTSKPIDVRVIAATNRNLEEMVDKGEFRL 418 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DLFYRL+++ + +PPLR+R D+ L F++ L+ + + ++ +L Y Sbjct: 419 DLFYRLNVVAIHIPPLRDREKDLGQLCLHFIE----KLNPIMKKKVDGISKDAQRLLHQY 474 Query: 443 DWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARES--AKTPAPRLLTPQ 498 WPGNIREL N++ER L + P + + ES Sbjct: 475 KWPGNIRELENVIERALNMLDNGTVIKSEHLPAKLTDTPSNHSVESLAVSIEKAEKTALM 534 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRL 526 AL++ G+++ AA+ LGISR+TF+ +L Sbjct: 535 NALKQTKGNRSKAASLLGISRSTFYEKL 562 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 144/403 (35%), Positives = 211/403 (52%), Gaps = 28/403 (6%) Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSL 197 + + ++ + ++ D A EA G F Y + +R + Sbjct: 75 ELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRALSYAS 134 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + R+ LR +Y G MLG S M+ + TI A+S + V+I GE+GTGKEL A+ Sbjct: 135 LQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVAR 194 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH + + P + VNCGAI E LLE+ELFG+E+GAFTG+ R R G FE+ Sbjct: 195 AIH--------FNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRN-RLGRFEL 245 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GG++FLDEIG+M LQ ++LRV++EK+ R+GG + + DVR+I+ATH NLE + + Sbjct: 246 AQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTE 305 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 RFR DLFYR++++ + LP LRER ADI LA FL+ + + + + Sbjct: 306 KRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAI----A 361 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTPAPRLL 495 +LHY WPGN+REL N++E L + DL + Q + + + P + Sbjct: 362 CMLHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGID 421 Query: 496 -----------TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL K NG K AA L ++RTT +LK Sbjct: 422 FNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLK 464 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 161/447 (36%), Positives = 243/447 (54%), Gaps = 31/447 (6%) Query: 93 VLQALAKAGKLTSSIGVVTYQETIPALV---AFQKTFNLRLDQR-SYITEEDARGQINEL 148 +++A+ + + G++ + + + Q +D+ I +D + L Sbjct: 195 MMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDVIGKSIDKVAPEIKLDDVFKRGKPL 254 Query: 149 KANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNA 208 + G L+ + G I + AT++ A A+ ++RH + Sbjct: 255 LNVAQKTKQGMLLVNRI--PVVHQGELIGAVATIQDA--QAVQKAEKAIRHRVYS---KG 307 Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L + ++G++ ++ YA++ A +LI GETGTGKEL AQ+IH Sbjct: 308 LLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIHNA------ 361 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 + HPFVAVNC A+ ES+LE+ELFGYEEGAFTG+R+GG+ GLFE+AH GT+FLDEI Sbjct: 362 --SNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEI 419 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 GEM LPLQ+RLLRVL+EKEV R+G +P+DVR+I+AT+ +L+ ++ G FR+DL+YRL Sbjct: 420 GEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRL 479 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 ++L ++LPPLRER+ D+ L FLK + + L VL H++WPGNI Sbjct: 480 NVLSIELPPLRERLDDLPDLFRFFLKNYKLD-----KQLIEKVLSIMLPVLCHHNWPGNI 534 Query: 449 RELRNMMERLALFLSVEPTPDLTPQFM-------QLLLPELARESAKTPAPRLLTPQQAL 501 REL N+ ER+++ L T D + + + + + + Q L Sbjct: 535 RELENIAERVSVLLKAHVTMDEVLAEVKKELFGSHIEILDSTDLTKEVENWERQRILQVL 594 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLKS 528 + G KT AA LGISRTT WR++K Sbjct: 595 REVRGSKTKAAALLGISRTTLWRKIKD 621 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 2/204 (0%) Query: 17 VSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLK 76 + ++L + +++ E A ++ E+A+ + D I+A+G+N ++ Sbjct: 2 FTYSKLTRILQEVLAEKQWPAEFILHEVLIEEAIKKAHEIEKTNSADVIVASGANATAIE 61 Query: 77 SR-LSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 + LS+PV+ IK +G+D++ AL A ++ V++YQE IP L F+ F + L Q +Y Sbjct: 62 EQGLSIPVVRIKVTGFDLVNALWLAKRMNRQAVVMSYQEPIPQLEQFRDLFRVDLMQEAY 121 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 DA+ ++ + +G ++GA L+ +L E G IFIYS +++R A A+++ Sbjct: 122 DGVHDAQEKLLRILGSGKSVIIGASLVNELTERMGGHSIFIYSRSSIRLALETAVELAD- 180 Query: 196 SLRHNTHDATRNALRTRYVLGDML 219 R + R V +L Sbjct: 181 QRRSEIEKRQKIQAMMRAVHEGIL 204 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 154/477 (32%), Positives = 231/477 (48%), Gaps = 57/477 (11%) Query: 93 VLQALAKAGKLTSSIGVVTY----QETIPALVAFQKTFNLRLDQRSY---ITEEDARGQ- 144 ++ +++A + S VV + ETI + + LD+ I DA Q Sbjct: 77 LMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDR-AQVVGTSLDEHFASESIRLLDALRQG 135 Query: 145 -----INELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + + + ++ A I E G I VR A + H Sbjct: 136 TSVQRVYHIPRPDSHVLINAAPIRREGEIIGAISIEQDITELVRLNEELAHTTAHL---H 192 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 N + G S ++ + A++ A VLI GE+G GKEL AQAI Sbjct: 193 NLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQAI 252 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ + PF+A+NCGAI +L E+ELFGY+ GAFTG+ + G+ G E+AH Sbjct: 253 HQA--------SRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAH 304 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+PL LQ +LLR L+E++ RVGG +P+ V+ R+++AT+ LE+ + GR Sbjct: 305 GGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGR 364 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL++ L++PPLRER D+ L + F+ A + +QA L Sbjct: 365 FREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQA----L 420 Query: 440 LHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQ---------------------- 476 Y WPGNIR+LRN++ERL++ + P+ P ++ Sbjct: 421 FEYTWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPT 480 Query: 477 -----LLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ P +A +PA ALE+ G+K AAA LG+SR T + ++K Sbjct: 481 TTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKK 537 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 128/325 (39%), Positives = 187/325 (57%), Gaps = 19/325 (5%) Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 R +Y L + GQ+ ++ +V++ I A S VLI+GE+G GKE+AA+ IH Sbjct: 414 RKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHY-------- 465 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + PFVA+NC AI E+LLE+ELFGYEEGAFTG++RGG+AG E A GGTLFLDEIG Sbjct: 466 LSERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIG 525 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +MPL +Q +LLR ++ +E R+G + P VD+R+I+AT+ L + +++GRFR DL+YRL+ Sbjct: 526 DMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLN 585 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 + + +PPLRER DI L F+ A + + +L++Y WPGNIR Sbjct: 586 VFNINIPPLRERRDDIPLLVNRFMNEFCERRKM----APKIVTSEAMNILMNYSWPGNIR 641 Query: 450 ELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARES------AKTPAPRLLTPQQALE 502 EL+N++ER P+ P + R + + L+ Sbjct: 642 ELQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLK 701 Query: 503 KFNGDKTAAANYLGISRTTFWRRLK 527 N +K A A LGI R T ++++K Sbjct: 702 ATNYNKLACAKLLGIPRATLYQKIK 726 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 132/357 (36%), Positives = 204/357 (57%), Gaps = 19/357 (5%) Query: 175 FIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILL 234 +++ D +++ + +N + Y ++GQ +V + Sbjct: 296 CNLMVSSIYNCEEDDIEVVYV-FEEVKKIKRKNHGQAYYTFDKVIGQDENFIKVVEYAKK 354 Query: 235 YARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAE 294 + S + +LI GE+GTGKE+ AQ+IH + PF+A+NCGAI + L+E+E Sbjct: 355 ISDSKSTILIMGESGTGKEVFAQSIHNY--------SSRVDGPFIALNCGAIPKQLIESE 406 Query: 295 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH 354 LFGYEEGAFTG+++GG G FE+A GGT+ LDEIGEMPL +QT+LLRV++E +T++G Sbjct: 407 LFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIGEMPLDMQTKLLRVVQEGVITKIGSS 466 Query: 355 QPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK 414 + +PVDVR+I+AT+ +L+++++ GRFR+DL+YRL++L L LPPLRER DI + +K Sbjct: 467 KSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLNVLPLFLPPLRERKGDIPLIIRYLIK 526 Query: 415 VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQF 474 L + + L+ YDWPGNIREL N++E L ++ E P Q Sbjct: 527 NISKRLEKKEPSISEEWLKEIN----SYDWPGNIRELENVVE---LIINTESIPSGYFQN 579 Query: 475 ---MQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +L ++ +S K + L+KF G+ T +A LGI R T + ++K Sbjct: 580 GNCYNEVLINISEDSLKLDFAEKEHLVKVLKKFKGNITRSAEALGIRRNTLYSKIKK 636 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 148/404 (36%), Positives = 219/404 (54%), Gaps = 32/404 (7%) Query: 133 RSYITEEDARGQINELKA-NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 191 R Y + + +I +++ +GT I E G F D + Sbjct: 249 RLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVA-----------TFQDVAE 297 Query: 192 MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + M + A + L + D++ S +M+ V YA + VLI GETGTG Sbjct: 298 IQNMEQKIRRRLADK-GLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTG 356 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KEL AQ+IH +K+ PFVA+NC A+ E+LLE+ELFGY EGAFTG+R+GG+ Sbjct: 357 KELFAQSIHNA--------SERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGK 408 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 AGLFE+AH GT+FLDEIGEMP+ LQ++LLRV++EK+V R+G + +PVDVR+I AT+ NL Sbjct: 409 AGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNL 468 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 E + +G+F+RDLFYR+SIL++ +P LRER DI L F+K +G Sbjct: 469 IEMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRG 528 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-------DLTPQFMQLLLPELAR 484 ++ +L +D+PGN+REL +++ER + + + Sbjct: 529 ME----LLKKWDYPGNVRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFL 584 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 E ++ ++ +G+ + AA LGISRTT WR+LK+ Sbjct: 585 EIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKN 628 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 5/202 (2%) Query: 19 VTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR 78 L E+ ++ +FD N+ LG I ++ + D II+ G +K Sbjct: 13 YKNLLEIAIEVKKDFDFAFNLE---LGDLSEGVKIAQEWEKKGADIIISRGGTYQLIKEA 69 Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITE 138 +S+PV+ IK S +D+L+ + IGV Y I + NL L + E Sbjct: 70 VSIPVVEIKVSPFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLNLIKIEIKKE 129 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSDALDMTRMSL 197 +A QI E K G + ++G + A + G+ I S V A S+A + Sbjct: 130 TEALFQIAEAKEKGAKIIIGDTIGACCAAQLGLKSRLIISGKEAVANALSEAFRLAEAIK 189 Query: 198 RHNTHDATRNALRTRYVLGDML 219 + +V ++ Sbjct: 190 SEKEKTEQIKTIVD-FVHDGII 210 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 154/457 (33%), Positives = 230/457 (50%), Gaps = 24/457 (5%) Query: 75 LKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTF--NLRLDQ 132 ++ ++ + V+ S +LQAL + ++ + ++R+ + Sbjct: 2 IRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAE 61 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 I +I L ++ A + A EA G Y + F + Sbjct: 62 MDGIA---TLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLD--FDRLQET 116 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 +L H + G M+G SP M+ + I + A S A VLI G++GTGK Sbjct: 117 LEKALAHTRETGAELPSASAAQFG-MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGK 175 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A+A+H A + P V +NC A+ ESLLE+ELFG+E+GAFTG+ + R Sbjct: 176 ELVARALH--------ACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-RE 226 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G F A GGTLFLDEIG++ +Q RLLR ++E+EV RVG +Q + VDV +I+ATH +L Sbjct: 227 GRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLA 286 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E++ GRFR+DL+YRL+++ +++P LR+R DI LA+ FL+ A++ Sbjct: 287 EEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK----AVKGFT 342 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTP-- 490 + +L+HYDWPGNIREL N +ER + L+ E + P A SA+ Sbjct: 343 PQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPL 402 Query: 491 -APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ALEK G+KT AA LGI+R T +L Sbjct: 403 VDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 142/404 (35%), Positives = 215/404 (53%), Gaps = 30/404 (7%) Query: 139 EDARGQINELKANGTEAVVGAG-LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 E G++ E V+G ++ L E + G + S ++ + SD++++ + L Sbjct: 334 ETIDGRVFESLPLPEGFVLGEKQVVVPLYYEDILCGAMLASCSSKCKCDSDSMELISLVL 393 Query: 198 RHNTHDATRNALRTRY------------VLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 H + R L M+G+ +M+ + + I A + VLI+ Sbjct: 394 SHASGTIRRAILHQEEIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQ 453 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GE+GTGKEL A+AIH AR ++ +PFV +NC A +LLE+ELFG+E+GAFTG Sbjct: 454 GESGTGKELVAKAIH--------ARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTG 505 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + R R G FE A GGT+FLDEI E+ L Q +LLRVL+ ++ R+GG + + VDVR+++ Sbjct: 506 AIRQ-RPGRFEQARGGTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILA 564 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ +L E+++ GRFR DL+YRL ++ + LPPLRER D LA FL+ A + Sbjct: 565 ATNKDLLEEVKAGRFREDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRIN 624 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELAR 484 + ++ LL Y WPGN+REL N+ME+ + E + P +Q P + Sbjct: 625 ----EISSSAMRALLDYSWPGNVRELENVMEQAVVLCKGETIALEDLPDKLQGARPARRK 680 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 LL + LE +K AA LGI R+T + +LK Sbjct: 681 TIEDQEKNLLL---ETLEACGWNKKMAAERLGIGRSTLYAKLKK 721 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 159/464 (34%), Positives = 235/464 (50%), Gaps = 29/464 (6%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLT----SSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 P IK VL AL A L I + ++ + A ++ L + Sbjct: 21 GAPPSEIKEVRGKVLDALGPANILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFG 80 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + A E + +G E + V A D + Sbjct: 81 MDCQKAMRSSVCSARCLIEKTIESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVV 140 Query: 196 SLRHNTHDAT-----RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 HD T + L+ RY G ++GQS +M ++ + + A+S + VLIEGE+GT Sbjct: 141 GGVEIFHDVTQLAELKKELKGRYAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGT 200 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL A AIH +K PF+ VNC A++E +LE+ELFG+ GAFTG+ Sbjct: 201 GKELIAHAIHE--------NSPRKDGPFIKVNCAALSEGVLESELFGHVRGAFTGAV-SS 251 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 + G FE+A GGTLFLDEIGE+ +Q +LLRVL+E+E RVGG + + VDVRVI+AT+ + Sbjct: 252 KPGRFELASGGTLFLDEIGEISASMQVKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRD 311 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 L+ + G FRRDL+YRL ++ L LPPLRER DI L SFL + +A F + Sbjct: 312 LKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDIPLLISSFL----SRYNAEFGKNVVG 367 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT------PDLTPQFMQLLLPELA- 483 Q ++ +L+++ +PGNIREL+N++E L + DL P + ++A Sbjct: 368 LSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIGVRELPRDLAPIPEESSFADVAL 427 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 S + ++A+EK G+ + AA LGI R+T WR+L+ Sbjct: 428 SRSNALRTMEDVMIRKAVEKTQGNMSQAAKLLGIGRSTLWRKLR 471 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 159/458 (34%), Positives = 229/458 (50%), Gaps = 28/458 (6%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAF-QKTFNLRLDQRSY 135 ++ + V+ S +LQAL + + + AL +K F+L L Sbjct: 4 EQVDILVVDDDISHCTILQAL--LRGWGYRVALA--NNGLQALEKVREKVFDLVLCDIRM 59 Query: 136 ITEE--DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMT 193 + + +I + ++ A D A EA +G Y + F Sbjct: 60 AEMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLD--FDKLQLTL 117 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 +L H + G M+G SP M + I L A S A VLI GE+GTGKE Sbjct: 118 SEALAHTRLSESPVTETPAAQFG-MVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKE 176 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+A+H A + P V +NC A+ ESLLE+ELFG+E+GAFTG+ + R G Sbjct: 177 LVARALH--------ASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKR-REG 227 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 F A GGTLFLDEIG++ +Q RLLR ++E+EV RVG +Q + VDVR+I+ATH +L E Sbjct: 228 RFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAE 287 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 ++ GRFR+DL+YRL+++ + +PPLR R DI PLA FL+ A++ Sbjct: 288 EVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRK----AVQGFTP 343 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPR 493 + +L+HY WPGNIREL N +ER + L+ E + P Sbjct: 344 QAMDLLIHYAWPGNIRELENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQP 403 Query: 494 LLTPQQ-----ALEKFNGDKTAAANYLGISRTTFWRRL 526 L+ ++ ALE+ G+KT AA LGI+R T +L Sbjct: 404 LVEVEKEAILAALERTGGNKTEAARRLGITRKTLLAKL 441 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 158/455 (34%), Positives = 232/455 (50%), Gaps = 24/455 (5%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 ++ + V+ S +LQAL + ++ Y A F+L L Sbjct: 4 EKIDILVVDDDVSHCTILQALLRGWGYNVALA---YSGREALEKASGHVFDLVLCDVRMA 60 Query: 137 TEE--DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 + + +I L ++ A + A EA TG Y + F + Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLD--FDRLQETLE 118 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 SL H + M+G+SP M+Q+ I + A S A VLI G++GTGKEL Sbjct: 119 KSLAHAQ-EVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKEL 177 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+H A + P V +NC A+ ESLLE+ELFG+E+GAFTG+ + R G Sbjct: 178 VARALH--------ASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGR 228 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 F A GGTLFLDEIG++ +Q RLLR ++E+EV RVG +Q + VDVR+I+ATH +L ++ Sbjct: 229 FVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQE 288 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 GRFR+DL+YRL+++ ++ P LR+R DI LAE FL+ A A++ Sbjct: 289 ASAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRK----AVKGFTPQ 344 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAP 492 + +L+HY WPGNIREL N +ER + L+ E +L +P + ++ + Sbjct: 345 AMDLLIHYAWPGNIRELENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVE 404 Query: 493 -RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ALEK G+KT AA LGI+R T +L Sbjct: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 466 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 131/396 (33%), Positives = 216/396 (54%), Gaps = 19/396 (4%) Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 T ++ Q++++K G+ + I E G+ G ++ + + + Sbjct: 189 TGKEEVAQLHKIK--GSYMIASRIPIVKNGEIIGVVGKVLFRNVKELNSLYKRISVIEKE 246 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 L R + Y L +++G+S + + + A +++ VLI GE+GTGKE+ A Sbjct: 247 LATYKSRF-REFNKANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFA 305 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 AIH E + PFV VNC AI LLE+ELFGYE GAFTG+++ G+ G FE Sbjct: 306 HAIHSE--------SNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFE 357 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 IA+ GT+FLDEIG+MPL +Q +LLRV++E+EV +VGG +++R+I+AT+ NLE ++ Sbjct: 358 IANEGTIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVE 417 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G+FR DL+YRL+++ +++PPLRER DI+ ++ +K LS ++ + +E Sbjct: 418 EGKFREDLYYRLNVVTIEIPPLRERGNDIILISNHLIK----KLSVDLDKKVKGISKEAE 473 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP---DLTPQFMQLLLPELARESAKTPAP- 492 L Y+W GN+REL N++ER + DL + + + ++ A Sbjct: 474 QYLKIYEWKGNVRELENILERAINIMENSEIIQVKDLPKEITGKKVSMVPKKLQDILAES 533 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL +G+K+ AA L I RT+ + +++ Sbjct: 534 EKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEK 569 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 144/441 (32%), Positives = 217/441 (49%), Gaps = 36/441 (8%) Query: 104 TSSIGVVTYQETIPA-LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTE--AVVGAG 160 I V + E I + F +L + Q + D + I + + ++ + Sbjct: 127 AEKIFSVKHNEIIGQPITRFFDYKDLEILQ----SLHDGKSIIAQFHQPRPDLFVLINSN 182 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLG 220 + E + G + Q + H T M G Sbjct: 183 PVYCNDE---IIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDTSDPFLAMNG 239 Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 +SP +++ Q + VLI GE+G GKE+ A+AIH + PF++ Sbjct: 240 KSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEA--------SETANAPFIS 291 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 +NCGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q +LL Sbjct: 292 INCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLL 351 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RVL+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ L +PPLRE Sbjct: 352 RVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRE 411 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R DI+ L +FL + P +R + LLHY+WPGNIRELRN++ERL + Sbjct: 412 RREDIIELTYTFLNDFSINYNRP----IRDLPSSIMHELLHYNWPGNIRELRNVVERLVV 467 Query: 461 FLSVEPT-PDLTPQFMQLLLPELARES-------------AKTPAPRLLTPQQALEKFNG 506 F + + P L S + ++AL +G Sbjct: 468 FATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDG 527 Query: 507 DKTAAANYLGISRTTFWRRLK 527 +K A LG++R T + RLK Sbjct: 528 NKLECAKQLGVTRATLYNRLK 548 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 140/382 (36%), Positives = 213/382 (55%), Gaps = 18/382 (4%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 G A++ I E G+ ++ + F L L + + + Sbjct: 82 KGETAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLRYLDAELNYYRSEVEK-LRG 140 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 R+ L ++LG SP + +V++ + A++ + +L+ GETGTGKEL A A+H Sbjct: 141 ARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGKELFAHALH--------LS 192 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++ + VNC AI + LLE+ELFGYEEGAFTG+R+GG+ G FE+A+ GTLFLDEIGE Sbjct: 193 SKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANRGTLFLDEIGE 252 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MP LQ +LLRVL++ E+ R+GG +P+ VDVR+++AT+ NL E ++ +FR DL+YRL++ Sbjct: 253 MPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQFREDLYYRLNV 312 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + L +PPLRER+ DI L F++ L+ ++ E V Y WPGN+RE Sbjct: 313 IELHIPPLRERMEDIPCLVVHFIR----ELNHRLGVKVKGITPEVEEVFQSYHWPGNVRE 368 Query: 451 LRNMMERL--ALFLSVEPTPDL---TPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN 505 L N++ER + V D+ P+ + + +R S + LE N Sbjct: 369 LYNVLERTMNVIQRDVIGLADINWFLPRVLSSSGRQTSRSSNTLRNLEAKIIHRVLESCN 428 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G+K+ AA LGI R+T + +LK Sbjct: 429 GNKSRAAEILGIHRSTIYNKLK 450 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 136/405 (33%), Positives = 224/405 (55%), Gaps = 27/405 (6%) Query: 136 ITEEDARGQINELKANG---TEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 + E+D G + ++K+ G ++ A T++A +A G F Y L Sbjct: 57 MPEKDGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQ 116 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 ++ + +++G SP M V + I A S+A VLI+GE+GTGK Sbjct: 117 RAVAQSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGK 176 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A+AIH ++++PF+ VNC + +SLLE+ELFGYE+GAFTG+ + Sbjct: 177 ELVARAIHY--------NSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGAS-SLKV 227 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G FE+AH GT+F DEIGE+ L Q +LLR ++EKE RVGG + + V+VR+++AT+ L+ Sbjct: 228 GRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLK 287 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 + +++G FR DLF+RL+++ +++PPLR+R DI L FL A + F+ ++ Sbjct: 288 QSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFL----AKYNKEFNKEIKGFS 343 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALF----------LSVEPTPDLTPQFMQLLLPEL 482 + + +L+ YDWPGN+REL N++ER + + + T P +++L L Sbjct: 344 KEAIKLLIGYDWPGNVRELENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENL 403 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + + R + +ALE+ N +T A L I+R + + ++K Sbjct: 404 SLKQIISDVERKV-ILKALEENNWCRTTVAKVLKINRRSLYAKMK 447 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 129/413 (31%), Positives = 205/413 (49%), Gaps = 22/413 (5%) Query: 123 QKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGI--FIYSAA 180 + L + + ++ I ++ ++ A + A EA G F+ Sbjct: 44 RADMVLTDLKLPNMDGQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPF 103 Query: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 ++ + + + AL RY +++G+SP M+++ I S A Sbjct: 104 SLDHLMQVVDKALEVRALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRA 163 Query: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 VL+ GE+G GK+L A+AIH +K P V +NC AI E+L+E+ELFGYE+ Sbjct: 164 TVLLTGESGVGKDLIARAIHFH--------SPRKDRPLVKINCTAIPENLMESELFGYEK 215 Query: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 GAFTG+ + + G FE A GT+FLDEIG++P +Q +LLRVL+E+E R+G + +D Sbjct: 216 GAFTGA-QTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHID 274 Query: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 VR+++AT+ +L ++QG FR DL+YRL+++ L +PPLRER DI LA F+ L Sbjct: 275 VRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVH----KL 330 Query: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 + + A L+ Y WPGN+REL N++ER + + + P Sbjct: 331 APDTGCQVESITDAGMEKLMAYHWPGNVRELENVIERSLVMATGTQLDADDIKLESAPRP 390 Query: 481 ELA-------RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 E ++AL + +G+K+ AA LG++R RL Sbjct: 391 RAQGNDNHFLPEGLSLDQYEQEIIREALRRADGNKSQAARLLGLTRNALRYRL 443 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 160/539 (29%), Positives = 266/539 (49%), Gaps = 38/539 (7%) Query: 14 IWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGA 73 I + L E + I D I+ E + + E+ D+I+ G+ Sbjct: 95 IVVLGFKSLVEEVQQIGPILDINLKAYHIEHEEEGESYIKKIIASGEKIDSIL-GGTVAE 153 Query: 74 YLKSRLSVPVILIKPSGYDVLQALAKAGKL---------TSSIGVVTYQETIPALVAFQK 124 + S+ + + ++ + +++ +A ++ + +++ K Sbjct: 154 NIASKFGIHTVHLETGEAAIEKSIKEAVRILEVSRKEKEKAEQFKAILNHINQGVISINK 213 Query: 125 T-----FNLRLDQRSYITEEDARGQIN---ELKANGTEAVVGAGLITDLAEEAGMTGIFI 176 FN ++ + I E+D G+ + V I G T I Sbjct: 214 EGKVTTFNPGAEKITGIIEKDILGKDIINFMSNTKLIDVVKTGMPILSQLHNIGKTEILT 273 Query: 177 YSAATVR--QAFSDALDMTRMSLRHNTHDATRNALRTR-----YVLGDMLGQSPQMEQVR 229 + + + R+ LR + Y L D++G+S ++ ++ Sbjct: 274 NDIPIIVDDKVVGAVSTFEAAAKIQEYEQKIRSNLRDKGYIAKYNLSDIIGESEIIQNIK 333 Query: 230 QTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES 289 + L YA + + VLI GE+GTGKE+ AQ IH +K+ PFVA+NCGAI + Sbjct: 334 KKSLKYAVTDSTVLIVGESGTGKEMFAQGIH--------LSSKRKNGPFVALNCGAIPGN 385 Query: 290 LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT 349 L+E+ELFGYEEGAFTG+ R G+ GLF AHGGT+FLDEIGE+P+ Q RLLRV++E+EV Sbjct: 386 LIESELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGELPIEFQARLLRVIQEREVR 445 Query: 350 RVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLA 409 +G ++ +P+DVR+I+A + +L +++++G FR DL+YRL+IL +++P L ER DI + Sbjct: 446 PLGSNKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNILSMRVPTLMERREDIGIIF 505 Query: 410 ESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD 469 + FLK+ + + + + + + +L Y+WPGNIREL N+ ERL + E T + Sbjct: 506 KHFLKLMCSRFNK-----VVKISEKAINILKEYNWPGNIRELENITERLVVLAEDEITDE 560 Query: 470 LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L + + + + + + + L + G++T AA LGISRT WR LK Sbjct: 561 LVKEELGDFIHYKDEKVSSLEYLKQNQILKVLSECKGNQTLAAQKLGISRTHLWRLLKK 619 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 132/437 (30%), Positives = 222/437 (50%), Gaps = 27/437 (6%) Query: 105 SSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITD 164 ++ + Q+ + +L + + + D + E+ ++ A + Sbjct: 27 QTVAYASGQKALESLAVHAPQLVITDLRMDKVGGLDILRECREVLPQTPVILITAYKTVE 86 Query: 165 LAEEAGMTGIFIYSAAT--VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQS 222 A EA G + Y V + + R ++ +Y +++G S Sbjct: 87 TALEAMKLGAYDYITKPFKVDELQLTIQRALDNQSLVRENRNLRQIVKEKYRFENIIGTS 146 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 +M+++ I A + + +LI+GE+GTGKEL A+A+H ++ PFVA+N Sbjct: 147 TKMQEIYNLIAKVADTDSTILIQGESGTGKELVARALH--------FNSTRQHQPFVAIN 198 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 C A+ E+LLE+ELFG+++G+FTG+ + + GLFE A GGT+FLDE+ M PLQT+LLRV Sbjct: 199 CSALPENLLESELFGHKKGSFTGAVQD-KIGLFEEAEGGTIFLDEVNSMAQPLQTKLLRV 257 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 L+E+++ RVG + VP++VRV++AT+ L + ++ G FR DL+YRL+++ +++P LRER Sbjct: 258 LQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIPVEMPALRERP 317 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 DI L FL+ + A ++ + +L Y WPGN+REL N +ER Sbjct: 318 DDIPLLVSHFLQKNAAQTGTE----AKKIDPKAIEMLAKYRWPGNVRELENAVERACALC 373 Query: 463 S--VEPTPDLTPQFMQLLLPELARESAKTPAPRLLT----------PQQALEKFNGDKTA 510 + T DL PQ ++ S P + L ++ ++ + Sbjct: 374 DDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLDEYIREQERRYIEETIKFNGNSREK 433 Query: 511 AANYLGISRTTFWRRLK 527 AA LGIS T +R+L+ Sbjct: 434 AAKMLGISMATLYRKLE 450 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 145/442 (32%), Positives = 216/442 (48%), Gaps = 36/442 (8%) Query: 104 TSSIGVVTYQETIPA-LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTE--AVVGAG 160 I V + E I + F +L + Q + D + + + + ++ + Sbjct: 127 AEKIFSVNHNEIIGQPITRFFDYKDLEILQ----SLHDGKSIVAQFHQPRPDLFVLINSN 182 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLG 220 + E + G + Q + H M G Sbjct: 183 PVYCNDE---IIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNG 239 Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 +SP +++ Q + VLI GE+G GKE+ A+AIH PF++ Sbjct: 240 KSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEA--------SEAAKAPFIS 291 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 +NCGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q +LL Sbjct: 292 INCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLL 351 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RVL+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ LQ+PPLRE Sbjct: 352 RVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLQIPPLRE 411 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R DI+ L SFL + P +R + LLHY+WPGNIRELRN++ERL + Sbjct: 412 RREDIIELTYSFLNDFSINYNRP----IRDLPSSIMHELLHYNWPGNIRELRNVVERLVV 467 Query: 461 FLSVEPT-PDLTPQFMQLLLPELARES-------------AKTPAPRLLTPQQALEKFNG 506 F + + P L S + ++AL NG Sbjct: 468 FATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIERALRILNG 527 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 +K A LG++R T + RLK Sbjct: 528 NKLECAKQLGVTRATLYNRLKK 549 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 151/392 (38%), Positives = 217/392 (55%), Gaps = 28/392 (7%) Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + + + ++ NG + V + ++ + S VR + + Sbjct: 275 ELKALVANVRTNGQQIV------NEQIQDGSTNKRYQVSIYPVRFQDHIYGVVIFLQQDQ 328 Query: 200 NTHDATRNALRT---RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + + + R RY +M+G SP + + + A + +LI GETGTGKE+ A Sbjct: 329 RVVNKKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVLA 388 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 QAIH+ + PFVA+NCGA+ SLLE+EL GYE GAFTGS+ G AG FE Sbjct: 389 QAIHQA--------SNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFE 440 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A+GGT+FLDEIG+MPL LQ LLR+LEE+ VTR+GG P+PVDVRVISAT+ +L+E +Q Sbjct: 441 QANGGTIFLDEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQ 500 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DL+YRL +L+++LPPLRER DI L +SFL AL F + + + Sbjct: 501 KGTFREDLYYRLCVLQMELPPLRERSEDIPVLIQSFL----PALCQEFGKQMISLTRETL 556 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLT 496 T+L Y WPGNIREL+N++++ + + LP+ ++ Sbjct: 557 TILERYHWPGNIRELKNVLQQAMFVMDGDVI-------HPHHLPDSFYSQTQSDEYEKQK 609 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +ALE+ G+ T AA L +SR T +RRLK Sbjct: 610 LLRALEQQEGNVTKAAASLNMSRATIYRRLKK 641 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 132/392 (33%), Positives = 223/392 (56%), Gaps = 23/392 (5%) Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 G++ ++ NG + + + G G ++ L+ ++ + + + Sbjct: 160 GEVQKI--NGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDN 217 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + +N R +Y D++G S + ++ A +++ VLI GE+GTGKEL A +IH Sbjct: 218 KSEKNR-RAKYFFKDIVGDSSESNNIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNA 276 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 ++ PF+ +NCGAI LLE+ELFGYE+GAFTG+++GG+ G FE+A+GGT Sbjct: 277 --------SNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGKFELANGGT 328 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIG+MP+ +Q +LLRV++E+EV +VGG+ +DVR+I+AT+ NLE+ +++ +FR Sbjct: 329 IFLDEIGDMPMCMQVKLLRVIQEREVEKVGGNILKKIDVRIIAATNKNLEKLVEKNKFRE 388 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL+++R+ +P LRER DIL +++ +K L ++ + ++ L +Y Sbjct: 389 DLYYRLNVIRINVPSLRERKEDILLISDFLVKKVSHRLG----ICIKGISKEAKEYLCNY 444 Query: 443 DWPGNIRELRNMMERLALFLSVE--PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ- 499 +WPGNIREL N++ER A L + P P+ + A +++ + Sbjct: 445 NWPGNIRELENVIERSANLLDSDFVIKPKHLPKEILKSYIVKAPTKENKYLKDIISEVEK 504 Query: 500 -----ALEKFNGDKTAAANYLGISRTTFWRRL 526 LEK NG+K + LGISR ++++ Sbjct: 505 EVICNCLEKNNGNKNKTSKILGISRANLYKKI 536 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 464 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 132/331 (39%), Positives = 197/331 (59%), Gaps = 32/331 (9%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 ++G+ P ++++ + I A+S + VL+ GE+GTGKEL A +IH + Sbjct: 248 FPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHE--------LSSRN 299 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 S PFVA+NC AI E+LLE+ELFGYEEG+FTG+R+GG+ G E+A+ GTLFLDEIG+MPL Sbjct: 300 SGPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLT 359 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLRV++EK + VG P+P++VR+I+ATH NLEE + G FR DLF+RL+++ + Sbjct: 360 LQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIF 419 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLR+R D L +L+ L PF + A+ L+ Y WPGNIREL N+ Sbjct: 420 IPPLRQRPEDTELLLHYYLRKYCILLKKPF----KILSYAALQQLVKYHWPGNIRELENL 475 Query: 455 MERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ--------------QA 500 +E L + + ++P+ + + + + +E + + + PQ Q Sbjct: 476 VEYLVNIHNQDI---ISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQM 532 Query: 501 LEKFNGD---KTAAANYLGISRTTFWRRLKS 528 L +F K AA LG+S T +RR+K Sbjct: 533 LNRFGWHTDGKKKAAAALGVSLATLYRRIKK 563 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 176/539 (32%), Positives = 256/539 (47%), Gaps = 76/539 (14%) Query: 38 NITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQAL 97 + +++ E + + N D +I G + RL + + I+ + AL Sbjct: 120 KLAVVEVREEDDAEQSIRNIKNSGVDIVI-GGVMSTQIAERLGLKTVFIETGREAIYHAL 178 Query: 98 AKAGKLT------------------------------SSIGVVTYQET-IPAL--VAFQK 124 +A ++ +I +V I L A Sbjct: 179 REAKRVARVRRQEQERSEQFRTILDYSTEGIITVDAAGAINLVNAAAMKITGLSGEAVGL 238 Query: 125 TFNLRLDQRSY-ITEEDARGQINELKA-NGTEAVVGAGLITDLAEEAGMTGIFIYSAATV 182 + L Q R ++ E++ NG + V I + G F Sbjct: 239 AVDKLLPQLGLSRVLASGRAELGEVETVNGQQVAVNRVPIIIRGQAVGAVATF------- 291 Query: 183 RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAV 242 Q +D + + + L R D+LG SP + Q +++ ++ V Sbjct: 292 -QPVADIQALEGKIRQK----IYKRGLVARLTFDDILGDSPAIRQTIAIAREFSKVNSNV 346 Query: 243 LIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGA 302 LI GETGTGKE+ AQ+IH ++ PFVAVNC A+ E+LLE+ELFGY EGA Sbjct: 347 LITGETGTGKEIFAQSIHNA--------SSRRKGPFVAVNCAALPENLLESELFGYAEGA 398 Query: 303 FTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVR 362 FTG+ RGG+ GLFE+AHGGT+FLDEI E+ LQ RLLRVL+E+E+ R+G + +PVDVR Sbjct: 399 FTGAARGGKMGLFELAHGGTIFLDEISEISPKLQGRLLRVLQEREIMRLGDDRVIPVDVR 458 Query: 363 VISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSA 422 +I+AT+ +L + MQ G FR+DL+YR+ +L+L LPPLRER DI+PL + FLK+ + Sbjct: 459 IIAATNRDLYQMMQAGLFRQDLYYRVDVLKLVLPPLRERQEDIIPLMQHFLKLYCLRSNR 518 Query: 423 PFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL 482 P +++ ++ +L Y WPGN+RELRN+ ERLA+ S +L E Sbjct: 519 P----VKEIGPDAQAMLRRYHWPGNVRELRNIAERLAVLASGPVIG--ARDIAAVLTGET 572 Query: 483 ARESAKTPAPRLL--------------TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R A +ALE+ + AA LGISRTT WRRLK Sbjct: 573 GRRKAINETAEPAAALAGANDVDLNRAILLKALEEADYHYGRAAARLGISRTTLWRRLK 631 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 15/237 (6%) Query: 17 VSVTRLFELFRDISLEFDH-LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYL 75 + +++ + E + + I F V I ++ + D ++A G A L Sbjct: 8 IPYSQMQAVVERTFQEQNDPGWELDII---FATGVREIARR-RDFSTDVVVARGVTAAAL 63 Query: 76 KSRL-SVPVILIKPSGYDVLQALAKAGKL--TSSIGVVTYQETIPALVAFQKTFNLRLDQ 132 K + PV+ + SGYD+L+A+ + + I +V Q+ I + + +++L Sbjct: 64 KRLMGDTPVVDMPVSGYDILRAVKACQQRFAATKIAIVGSQDMIYGAKSIEDIMDIKLAV 123 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 E+DA I +K +G + V+G + T +AE G+ +FI + Sbjct: 124 VEVREEDDAEQSIRNIKNSGVDIVIGGVMSTQIAERLGLKTVFIETGREAIYHALREAKR 183 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETG 249 R + + Y ++ + A I G +G Sbjct: 184 VARVRRQEQERSEQFRTILDYSTEGIITVDAA--GAINLVNAAAMK-----ITGLSG 233 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 145/434 (33%), Positives = 217/434 (50%), Gaps = 30/434 (6%) Query: 109 VVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKAN--------GTEAVVGAG 160 VV + + + + I I+ K G EA+V Sbjct: 42 VVFFNKQYQEFLNISDEEAIGKHVTEIIENTRLHVVISTEKPEIDYLQNIKGREAIVQRI 101 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLG 220 + + G G + ++ + L + + ++ A Y D+LG Sbjct: 102 PVFMDGKLLGAIGKISFRDVDEVKSLAKKLQVAENKAKKFENELRYTAT---YDFADILG 158 Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 S + V++ A ++ VLI+GETG GKEL A AIH + PFV+ Sbjct: 159 VSQSITAVKRLAHKVAATNTNVLIQGETGVGKELFAHAIHN--------NSNSCNGPFVS 210 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 +NC AI + LLE+ELFGY+EGAFTG+R+ G+ G FE+A GGT+FLDEIG+MPL +Q++LL Sbjct: 211 INCAAIPQDLLESELFGYDEGAFTGARKNGKIGKFELADGGTIFLDEIGDMPLGMQSKLL 270 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RVL++++ RVGG VDVRVI+AT+ N+E+ ++ FR DLFYRL+ + L +PPLRE Sbjct: 271 RVLQDRQFERVGGLTRQKVDVRVIAATNVNIEDKVRNNEFRADLFYRLNTISLIIPPLRE 330 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R DI + + LK ++ ++ + L YDWPGNIREL N++ERL Sbjct: 331 RYEDISLIVDKSLKNLNSS-----EYGNKRFSSQAMQTLTMYDWPGNIRELLNVVERLFF 385 Query: 461 FLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL------TPQQALEKFNGDKTAAANY 514 + + + + + R+S + ALE NG+K AA Sbjct: 386 LVDSDLVEENHVKQALSGINSEERKSNTNALEDQIHLTEKDAIINALESCNGNKAQAAKL 445 Query: 515 LGISRTTFWRRLKS 528 LGI RTT ++++K Sbjct: 446 LGIHRTTLYQKMKK 459 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 156/459 (33%), Positives = 228/459 (49%), Gaps = 28/459 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTS-SIGVVTYQET-IPALVAFQKTFNLRLDQRSYITEEDA 141 ILI +V + L+ A L T + L + + A Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 ++ + ++ A + A EA G F Y + + + L+ Sbjct: 67 LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK 126 Query: 202 HDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + AL T + G +L SP M + + A S A+VLI GE+GTGKEL A+AI Sbjct: 127 KEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAI 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + PF+ VNC A+ ESLLE+ELFG+E+GAFTG+ + R GLFE A+ Sbjct: 187 HY--------NSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGA-QTLRQGLFERAN 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTL LDEIGEMPL LQ +LLR+L+E+E R+GGHQ + VD+R+I+AT+ +L+ +++G Sbjct: 238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++ L LPPLR+R DI LA FL+ + + + ++L Sbjct: 298 FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD----IIDIDPMAMSLL 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLL-------LPELARESAKTP 490 + WPGNIREL N++ER + S DL PQ Q + + + K Sbjct: 354 TAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEE 413 Query: 491 APRLL--TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 R+ + LE+ G++T A LGISR +L+ Sbjct: 414 IKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 145/449 (32%), Positives = 230/449 (51%), Gaps = 22/449 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK---TFNLRLDQRSYITEED 140 ILI D+L + K + T + AL + L ++ + Sbjct: 5 ILIVDDDRDILNLMKLKLKNYGY-TIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLE 63 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 ++ E ++ A + A A G F Y + F + + +L + Sbjct: 64 FIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPIN--FEELKIIIDQALEVS 121 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 N L++ D++ +SPQM+QV +T A VLI GE+GTGKE+ A IH Sbjct: 122 DLKKELNELKSLLS-TDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIH 180 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + +K PF+A+NCGAI LLE+ELFGY++GAFTG+ + GL E A G Sbjct: 181 K--------NSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTD-KKGLIEEAEG 231 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIGE+PL LQ +LLRVL+E E+ +G ++P +DVR I+AT+ +L++ +++G+F Sbjct: 232 GTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKF 291 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YR++++ + +PPLRER DI+PLA+ F+ + P ++ + + LL Sbjct: 292 REDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIP----KKRLSEKAREKLL 347 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLT--PQ 498 +YD+ GN+REL N++ER L E D+ + + + K + Sbjct: 348 NYDYKGNVRELENIIERAVLTTEGEEITDIPVTVSKRYILSQELKPFKEAKKEFEESYLK 407 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRLK 527 LEK + + + A+ GI+R +R +K Sbjct: 408 NLLEKTDFNISKASKIAGITRAQIYRMIK 436 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 151/442 (34%), Positives = 226/442 (51%), Gaps = 39/442 (8%) Query: 113 QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMT 172 ++ + + F+ L LD++ +TE A Q +T + +T Sbjct: 123 RQELKGFLEFEDKPLLLLDRQGIVTECSAGVQTVLGLNRSRLLGETIERLTSEKVKIDVT 182 Query: 173 GIFIYSAATVRQAFSDALDMTRMSLR----------------HNTHDATRNALRTRYVLG 216 +F S TV + + ++ + + + Y Sbjct: 183 NVFKPSFQTVEMKLEGKREKWHVQIKPTYVQGEVVSFMIKFLKKETNQFKQSKDLLYSFQ 242 Query: 217 DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH 276 D++G S + R+ A +L+ GE+GTGKE+ AQA+HRE + Sbjct: 243 DIIGSSEAIHFAREMARRIAGQDITILLRGESGTGKEMFAQAVHRE--------SQRAQG 294 Query: 277 PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ 336 PFVA+NC AI ++LLE+ELFGYE GAFTG++R G+AG FE+AHGGT+FLDEIG+M L LQ Sbjct: 295 PFVAINCAAIPDNLLESELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGDMSLHLQ 354 Query: 337 TRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLP 396 +LLRVL+E++V RVGG Q V VDVR+I+ATH NLEE +Q+ FR DL+YRL+++ + +P Sbjct: 355 AKLLRVLQERKVERVGGTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNVIPITIP 414 Query: 397 PLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMME 456 P+RER D+ L E F+K LS + + + ++ Y WPGN+RE+ NM+E Sbjct: 415 PVRERKEDLPILIEYFMK----RLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNMVE 470 Query: 457 RLALFLSVE-PTPDLTPQFMQLLLPELARESAKTPAPRLLT--PQQAL-------EKFNG 506 + + + T D P ++++ + + AP QQ L G Sbjct: 471 HVIYLETGDLITADSLPAYLKIKEGKSTSQLQINVAPHGEESFKQQVLHLLDVYGRHTEG 530 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 K A +GIS T +RRLK Sbjct: 531 -KKRIAKEMGISLPTLYRRLKK 551 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 142/461 (30%), Positives = 220/461 (47%), Gaps = 35/461 (7%) Query: 88 PSGYDVLQALAKAGKLTSSIGVVTY-QETIPALVAFQKT-----------FNLRLDQRSY 135 P+ + +L ++ +A + ++ G++ Y E + +K + Sbjct: 10 PTLHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKV 69 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + I L ++ I + E + + + T ++ L T Sbjct: 70 LENQQPVRDIYHLPRPDKHVLISTTPIYNENNEL-IGSMSVEKDITATIKLNEKLTSTSE 128 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 L+ +N ++ G + ++ + + A++ A +LI GE+G GKEL Sbjct: 129 ELQQLKQQMIQNNRDD--PFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELF 186 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 AQAIH + F+ +NCGAI +L E+ELFGYE GA+TG+ +GG+ G Sbjct: 187 AQAIHEA--------SLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKI 238 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A GGTLFLDE+GE+PL +Q +LLR L+EKE+ R+GG P +DVR+I+AT+ LE+ + Sbjct: 239 ELADGGTLFLDEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMV 298 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 G FR DLFYRL++ +PPLRER DI LA F K + P Q + Sbjct: 299 LNGTFRSDLFYRLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKP----TPFVHQEA 354 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-----LTPQFMQLLLPELARESAKTP 490 L Y WPGNIRELRN +ERL + + L PQ P + T Sbjct: 355 TKRLHAYSWPGNIRELRNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLTD 414 Query: 491 APRLLT---PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L Q L++ G+K+ A LG+SR ++++K Sbjct: 415 ERESLEKTRILQTLQQTYGNKSITAKKLGMSRANLYKKIKK 455 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 144/442 (32%), Positives = 215/442 (48%), Gaps = 36/442 (8%) Query: 104 TSSIGVVTYQETIPA-LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTE--AVVGAG 160 I V + E I + F +L + Q + D + + + + ++ + Sbjct: 43 AEKIFSVNHNEIIGQPITRFFDYKDLEILQ----SLHDGKSIVAQFHQPRPDLFVLINSN 98 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLG 220 + E + G + Q + H M G Sbjct: 99 PVYCNDE---IIGAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNG 155 Query: 221 QSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 280 +SP +++ Q + VLI GE+G GKE+ A+AIH PF++ Sbjct: 156 KSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEA--------SEAAKAPFIS 207 Query: 281 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLL 340 +NCGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q +LL Sbjct: 208 INCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLL 267 Query: 341 RVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRE 400 RVL+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ L +PPLRE Sbjct: 268 RVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRE 327 Query: 401 RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL 460 R DI+ L SFL + P +R + LLHY+WPGNIRELRN++ERL + Sbjct: 328 RREDIIELTYSFLNDFSINYNRP----IRDLPSSIMHELLHYNWPGNIRELRNVVERLVV 383 Query: 461 FLSVEPT-PDLTPQFMQLLLPELARES-------------AKTPAPRLLTPQQALEKFNG 506 F + + P L S + ++AL NG Sbjct: 384 FATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKKVIERALRILNG 443 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 +K A LG++R T + RLK Sbjct: 444 NKLECAKQLGVTRATLYNRLKK 465 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 147/403 (36%), Positives = 211/403 (52%), Gaps = 41/403 (10%) Query: 150 ANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNAL 209 N +V A + +EE + I + T Q + L + ++ Sbjct: 203 NNKVYSVNVAPFPCNESEENKLVTIKNVTHITELQEQLSRANSKLNYLENTVSKISQEH- 261 Query: 210 RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 Y G++ SP+ME V + A + A VLI GE+GTGKEL A AIH+ Sbjct: 262 ---YTFGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQH------- 311 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 +K P + +NCGAI E+L E+E FGY GAFTG+++ G+ G FEIA GGTLFLDEIG Sbjct: 312 -SDRKDAPLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIG 370 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 ++PL +Q +LLR L+E RVGG +PV VDVR+I+AT+ NLEE +Q +FR DL+YR++ Sbjct: 371 DLPLNMQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRIN 430 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 + L+LPPLRE+ DI+PL + F+ + + QA L Y WPGN+R Sbjct: 431 VANLELPPLREKTEDIMPLTKRFIDHFSQVHGIEIT----EIEQAVMDTLEEYHWPGNVR 486 Query: 450 ELRNMMERLALFLS------------VEPTPDLTPQFMQLLLPELARE------------ 485 EL+N++ERL +F + + P P Q Q L +L R+ Sbjct: 487 ELKNVIERLVIFSTQGKISIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSN 546 Query: 486 -SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +K T +L+K + +K A L I R+T + R+K Sbjct: 547 SESKIDELERKTILDSLKKHSFNKAKVARELNIPRSTLYYRMK 589 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 231/481 (48%), Gaps = 54/481 (11%) Query: 84 ILIKPSGYDVLQALAKAGKLTS-SIGVVT-YQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + L+KA K ++ + ++ + + + + ++ D Sbjct: 6 ILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLDL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I E+K++ ++ A A EA G + Y DA+ R Sbjct: 66 LDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREIA 125 Query: 202 HD--ATRNALRTRYVLG-DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + L+ Y + +++G S M+ + +TI A S +LI+GE+GTGKE+ A+A Sbjct: 126 GQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH G+ PFVA+NC AI LLE+ELFG E GAFTG+ + G FE A Sbjct: 186 IH--------FNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASER-KQGKFEQA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 + GT+FLDEIG+MPL LQ ++LRVL+E EVTRVGG Q + V+VR+++AT+ L+E ++Q Sbjct: 237 NQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQR 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL+YRL+++ + L PLRER DI L FL + LS P +Q + + Sbjct: 297 EFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIP----PKQLTPEAMAL 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ 498 L + WPGN+REL N ++R + + P LT L PE + L Sbjct: 353 LSRHSWPGNVRELENTIKRAVILSND---PMLTEADFDGLQPEGEETAMTPQDASLEAIV 409 Query: 499 QA---------------------------------LEKFNGDKTAAANYLGISRTTFWRR 525 +A LEK ++ AA+ LGI+R T ++ Sbjct: 410 EAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKK 469 Query: 526 L 526 + Sbjct: 470 I 470 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 233/471 (49%), Gaps = 39/471 (8%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQRSYITEED 140 +ILI + ++ + + +E + + F L + I + Sbjct: 6 IILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNINGVE 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 +I E N V+ D A E G + Y + + + R Sbjct: 66 LIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPF-KLDRLRSVVEKALRRQG 124 Query: 201 THDATRNALRTRYVLGD-----MLGQSPQMEQVRQTILLYARSSAA-VLIEGETGTGKEL 254 ++ + ++G SPQM+++ I A+SS+ VLI+GE+GTGKEL Sbjct: 125 LRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKEL 184 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+HR +KS FV +NC A+ ESLLEAELFGYE+GAFTG+ G+ GL Sbjct: 185 VARAVHR--------LSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGL 236 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FEIA GT+FLDEIGEM + LQ +LLR+L+E++ RVGG Q + +DVR+I++T+ NLEE+ Sbjct: 237 FEIADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEE 296 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + G FR+DL+YRL +L + +PPLRER DI+ L + F+ + F + Sbjct: 297 IASGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIH----KYNNEFGKNICDIPPD 352 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSV------------------EPTPDLTPQFMQ 476 +E +LL Y WPGNIREL+N++ER L + E +T Sbjct: 353 TERILLEYGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNT 412 Query: 477 LLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++ + L++ + +T AA LGI+RTT + ++K Sbjct: 413 DCVSSDGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIK 463 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 149/439 (33%), Positives = 223/439 (50%), Gaps = 28/439 (6%) Query: 99 KAGKLTSSIGVVTYQETIPALVAFQKTFNLRLD-QRSYITEEDARGQINELKANGTEAVV 157 G+L + + + A + K + LD + I +++ V+ Sbjct: 20 NLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLATLSLLSQQNNRIPVIVI 79 Query: 158 GAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNAL------RT 211 A + A EA G F Y V +D +++ H L + Sbjct: 80 TAFSSMENAIEAMKKGAFDYVTKPVD------IDNLHIAISKALHQKISPPLSPGTEPQA 133 Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 +++G+S M+++ I L A S A +L+ GE+GTGKEL A AIHR Sbjct: 134 DSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHRH--------S 185 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 +K + +NC A+ E+LLE+ELFG+E GAFTG+ + + GLFE A GTLFLDEIG+M Sbjct: 186 KRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQ-KKGLFERADKGTLFLDEIGDM 244 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 L Q ++LRVL+E E RVGG+ + V+VR+I+A+H NLE+ +++G FR+DLF+RLS++ Sbjct: 245 SLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSVV 304 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 L LP LRER+ DI LA FL + + ++ Q + +L+ Y WPGNIREL Sbjct: 305 PLHLPALRERLVDIPILANFFLSL----YNKKNRKDIKGFSQEALDLLMEYPWPGNIREL 360 Query: 452 RNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKT 509 N +ER + E +L PQF + P QQAL + +K+ Sbjct: 361 ENSIERGVILCLGEQITAHELPPQFFRNRSPGELSSRDTLRDVEKRAIQQALARSGFNKS 420 Query: 510 AAANYLGISRTTFWRRLKS 528 A A LGI+R T +++ Sbjct: 421 ATAKQLGIARQTLLNKIRD 439 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 213/370 (57%), Gaps = 20/370 (5%) Query: 165 LAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQ 224 L + G + + A ++ + + + A + L+ RY G ++G+S + Sbjct: 112 LVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVALKEELKGRYSFGRIIGRSEK 171 Query: 225 MEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 284 M+++ + + A+S + VLIEGE+GTGKEL A A+H ++ PFV +NC Sbjct: 172 MQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHE--------NSPRREGPFVKLNCA 223 Query: 285 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 344 A++E +LE+ELFG+ +GAFTG+ + R G FE+A GGTLFLDEIGE+ +Q +LLRVL+ Sbjct: 224 ALSEGVLESELFGHVKGAFTGAVQS-RPGRFELASGGTLFLDEIGEISPSMQVKLLRVLQ 282 Query: 345 EKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVAD 404 E+E RVGG + V VDVRVI+AT+ +L++ M++G FR+DL+YRL ++ + LPPLRER D Sbjct: 283 EEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGD 342 Query: 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV 464 + L +SF++ +A ++ + VLL+Y +PGNIREL+N++E AL + Sbjct: 343 LPLLIQSFIE----RYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALLCND 398 Query: 465 EPTP------DLTPQFMQLLLPELA-RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGI 517 DL P Q ELA E + A+ + G+ + A L + Sbjct: 399 SRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVARKLSM 458 Query: 518 SRTTFWRRLK 527 R+T WRRLK Sbjct: 459 GRSTLWRRLK 468 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 146/459 (31%), Positives = 230/459 (50%), Gaps = 43/459 (9%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 + +I + +G + + + + + + + F++ L + Sbjct: 161 DSVDRGIIAVDGTG----KIIHYNKRAIGLFKLSENEVCDRNIKDLLEEFDVNLLFKKSR 216 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 ++ R + K +G V A I +E G+ +F +S + + + M Sbjct: 217 QVKN-RAFVYRGKGDGFRGVFDANPIRIGSENFGI--VFTFSNISDVLGIINDMTTGTMI 273 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 ++ D++G+S +V+ A+SS+ VLI+GE+GTGKEL A Sbjct: 274 MK----------------FDDIIGESQLFNEVKIQGEKAAQSSSTVLIQGESGTGKELFA 317 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH + PF+ +NC AI E LLE+ELFGYEEGAFTG++RGG++G FE Sbjct: 318 RAIHFH--------SQRCKKPFIPINCAAIPEQLLESELFGYEEGAFTGAKRGGKSGKFE 369 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+GGT+FLDEIG+MPL LQT+LLRVL+E+ + +VGG +P+D R+I+AT+ +LE + Sbjct: 370 LANGGTIFLDEIGDMPLHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATNKDLENRVL 429 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR+DLFYR++++ L +PPLR+R D++ L L L +++ Sbjct: 430 EGEFRQDLFYRINVIPLHIPPLRQRGEDLMILVSYLLNKCNEKLGK----YIQEVHPGVF 485 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARES----AKTPA 491 V + Y WPGN+REL N +E S + P+ + E ES Sbjct: 486 DVFMSYQWPGNVRELENTIEYAVNMCSGSIIMERDLPKRLSRRQTESKDESFRGITSIQE 545 Query: 492 PRLLTPQQALEKFNGDK---TAAANYLGISRTTFWRRLK 527 +A+ F K T AA LGI R T +R+LK Sbjct: 546 LERKEMIKAIAYFGNTKQAITMAATALGIGRATLYRKLK 584 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 153/456 (33%), Positives = 237/456 (51%), Gaps = 24/456 (5%) Query: 82 PVILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEE 139 P +L+ + L L + + ++GV + + + L + + + Sbjct: 4 PKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGMGGL 63 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 +I + ++ VV A A A G Y A V + + + Sbjct: 64 SLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLREKQQ 123 Query: 200 N--THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + + L+ +Y +++G SPQM ++ + I A S+A+VLI GETGTGKEL A Sbjct: 124 LVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAH 183 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH R + PFVA++C A++E +LE+ELFG+E+GAFTG+ + R G FE+ Sbjct: 184 AIHY--------RSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQS-RKGRFEL 234 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDE+ EM L +Q +LLRVLE+ E RVGG + + VDVR I+AT+ NLEE++ + Sbjct: 235 ADGGTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSE 294 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR DLFYRL+++ +Q+PPLRER DI L+ F + + ++ + Sbjct: 295 GRFREDLFYRLNVINIQMPPLRERKDDIPILSNYF----AVKYAKKYKKEIKGFDPEAIK 350 Query: 438 VLLHYDWPGNIRELRNMMERLALFL-----SVEPTPD-LTPQFMQLLLPELARESAKTPA 491 LL + W GNIREL+N +ER + SV+ P+ + P + + ++ + A Sbjct: 351 ALLSHHWQGNIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEA 410 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + Q+ L+ NG K +AA LGIS + K Sbjct: 411 EKEI-IQRTLQITNGSKQSAAKILGISTRKIEYKTK 445 >UniRef50_Q8EN58 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8EN58_OCEIH Length = 466 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 134/394 (34%), Positives = 206/394 (52%), Gaps = 32/394 (8%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 NG+ + I E G G ++ + F + + L + D N LR Sbjct: 79 NGSVMIANRFPIVVDDEIVGAVGTVMFPTPENLRDFKNKIQQLVTDLSYY-RDKVNNELR 137 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 ++Y D++G S + +++ A + ++VLI GE+GTGKEL A AIH Sbjct: 138 SKYTFKDLIGNSQEFVHLKEFAETVAGNDSSVLITGESGTGKELFANAIHNS-------- 189 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++ HPF+ +NC AI E L E+ELFGY EGAFT +++GG+ GLFEIAH GT+FLDEIGE Sbjct: 190 SLREQHPFLPINCSAIPEELFESELFGYSEGAFTDAKKGGKKGLFEIAHNGTIFLDEIGE 249 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 +PL +Q++LLRVL+E+E+ +G + + ++VR+I AT+ NL + ++ G FR DL+YRL++ Sbjct: 250 LPLSMQSKLLRVLQEREIQPIGAQKYISINVRIIVATNRNLLKMVENGEFREDLYYRLNV 309 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + + +PPLR+R DI A L+ L F + + L + WPGN+RE Sbjct: 310 IHIDIPPLRKRKEDIKQTAYQLLR----KLEHKFYRSDVMISKEVIKQLEMHHWPGNVRE 365 Query: 451 LRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAKTPAPR---------------- 493 L N++ER L P +++ ++ E +T R Sbjct: 366 LENVLERAINMLKENTILLQHLPLYIRDIILEERMNIEQTEKNRGNEIVYLKKMKEVIAD 425 Query: 494 --LLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 Q AL G+K AA LGI +T+ + + Sbjct: 426 AEKQAIQNALSHTKGNKLEAAKLLGIGKTSLYDK 459 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 460 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 163/440 (37%), Positives = 231/440 (52%), Gaps = 34/440 (7%) Query: 109 VVTYQETIPALVAFQK---TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDL 165 VV + + L A + + + ++ D I + + ++ A + Sbjct: 33 VVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVEVIMMTAFATVET 92 Query: 166 AEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATR---NALRTRYVLGDMLGQS 222 A EA G + Y +L + + + R D TR AL R D++GQS Sbjct: 93 AVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEALTVRSQFEDLIGQS 152 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 QM V + + + S+A VLI+GE+GTGKEL A+AIH R +K PFVAVN Sbjct: 153 TQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHY--------RSARKDKPFVAVN 204 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 C A+ E+LLE+ELFG+ +G+FTG+ G + GLFE A GGT+FLDEIG++P Q RLLRV Sbjct: 205 CSALTETLLESELFGHVKGSFTGAT-GNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRV 263 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 L+E EV RVG ++PV VDVRVI+ATH +L +QG+FR DLFYRL+++ + LPPLR+R Sbjct: 264 LQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRP 323 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 D+ LA FLK+ + + + ++A L W GN+REL N++ER + Sbjct: 324 EDVPLLAHHFLKLYASKADKKVTGISPRAMEA----LTCNRWTGNVRELENVIERAVVLT 379 Query: 463 SVE--PTPDLTPQFMQLLLPELARE----------SAKTPAPRLLTPQ---QALEKFNGD 507 E DL P F P+ E AK A R + LEK N + Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 508 KTAAANYLGISRTTFWRRLK 527 ++AA G+ R+ F R LK Sbjct: 440 VSSAARAAGVDRSNFRRLLK 459 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 142/430 (33%), Positives = 213/430 (49%), Gaps = 29/430 (6%) Query: 115 TIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTE-------AVVGAGLITDLAE 167 T +L K N L + + E+ + E V+ A A Sbjct: 30 TASSLEEASKIINEILPEIILTDLKLGNQNGIEILNSLPEEPFRPAVIVITAFGTISSAV 89 Query: 168 EAGMTGIFIYSAATVRQ--AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 A G F Y + + + R L ++ + ++G+S +M Sbjct: 90 NAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNLIKENLMLRKELYEKFKMDGIIGKSRKM 149 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 QV + ++A VLI GE+GTGKEL A+AIH +K PF+A+NC A Sbjct: 150 LQVLDIVKKATPTNATVLIYGESGTGKELIARAIHY--------NSPRKDKPFIAINCAA 201 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 I ++L+E+ELFGYE GAFTG+ + GL E A GTLFLDEI E+PL Q++LLRVL++ Sbjct: 202 IPDTLIESELFGYEPGAFTGANTR-KIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQD 260 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 KEV ++G VDVR+I+AT+ NL E +++ +FR DL+YRL ++ +++PPLRER DI Sbjct: 261 KEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRERKEDI 320 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE 465 L F++ S F + + + LL+Y WPGNIREL +++ER + + Sbjct: 321 PDLVHFFIE----KYSKEFGKRVNGIEEKALEALLNYSWPGNIRELESVIERAIIICEKD 376 Query: 466 PTP-DLTPQFMQLLLP------ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGIS 518 + ++++ P ++ E ++AL K N AA LG+S Sbjct: 377 KITFNDIQDELRVITPKNLFDIDIPDEGINYEELEKELIKKALIKSNFVIAKAARLLGMS 436 Query: 519 RTTFWRRLKS 528 TFW RLK Sbjct: 437 YDTFWYRLKK 446 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 208/387 (53%), Gaps = 22/387 (5%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 G +V I + G G ++ Q ++ + + + +N Sbjct: 219 RGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKVTFFQEELQKNR-T 277 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 + ++ DM+ +SPQM++++ I + A S++ VLI GE+GTGKE A AIH Sbjct: 278 AQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIH--------LG 329 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + PF+ VNC +I ESL+E+E+FGY GAFTG+ + G+ G E A GGTLFLDEIGE Sbjct: 330 SDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIGE 389 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPL LQ +LLRVL+++E+ R+G + + V++R+++AT+ L + +G FR+DL+YRL++ Sbjct: 390 MPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLNV 449 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + L LPPLRER+ DI PL F+ + + A + + LL Y WPGNIRE Sbjct: 450 INLHLPPLRERLEDIEPLTHFFI----SKFNDILKANVSGITPNAMATLLQYSWPGNIRE 505 Query: 451 LRNMMERLALFL--SVEPTPDLTPQFM-------QLLLPELARESAKTPAPRLLTPQQAL 501 L N++ER + + L Q + Q++ + R + AL Sbjct: 506 LENVVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAAAL 565 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLKS 528 EK G+KT AA L +SR+ + +L Sbjct: 566 EKAGGNKTKAAKLLNLSRSRLYDKLNK 592 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 151/397 (38%), Positives = 218/397 (54%), Gaps = 28/397 (7%) Query: 132 QRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 191 ++ T D GQ+ LK +GT + I + G F DA + Sbjct: 249 EKVLTTGRDELGQL--LKVSGTRVLCNKVPIVVNGKPVGAVA-----------TFQDAGN 295 Query: 192 MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + +M R R + T + D++G SPQ+ +A++ ++VLI GETGTG Sbjct: 296 IQQMEARIRREIYARGHVAT-FTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTG 354 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KE+ AQ+IH + + PFVA+NC A+ +LE+ELFGY GAFTG+ + G+ Sbjct: 355 KEVFAQSIHNA--------SARANGPFVAINCAALPSQILESELFGYVGGAFTGASQKGK 406 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 GLFE+AHGGT+FLDEI EM Q +LLRVL+EK+V R+G + +PVDVRVI+AT+ NL Sbjct: 407 PGLFELAHGGTIFLDEIAEMDYVTQGKLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNL 466 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 +++ +FR DL+YRL++LRL+LPPLRER ADI+ AE FL+ AA + + Sbjct: 467 SRLVRENKFRADLYYRLNVLRLKLPPLRERGADIIRYAEFFLEKHSAAQNRRLA-----F 521 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA 491 A+ L + WPGN+REL+N +ER+ M + E A + Sbjct: 522 TPAALERLARHPWPGNVRELQNTIERIVAVCRQPQVDAGLVAQMLEDDADSGIEVAAADS 581 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + +QAL G + AA LG+SR+T WR++K Sbjct: 582 EK-EQIRQALAIAKGKQGEAARLLGVSRSTLWRKMKK 617 Score = 97.9 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 1/179 (0%) Query: 42 IQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQALAKA 100 I+ G A I +KL + + II+ G + +K L V ++ + +G+DV++ + +A Sbjct: 30 IERGLLSAGVRIARKLVEDGVEVIISRGGTASAIKDAGLPVTIVEVPITGFDVIRTVEQA 89 Query: 101 GKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG 160 + + IGVV + + + + + Q E A ++ + G + VVG Sbjct: 90 KQYGTRIGVVAFPSMVMGIDCLGPILGVDIRQYIITDEFQAESRVLQAFREGADVVVGGV 149 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDML 219 + A++ + I S + + + A+ + ++ Sbjct: 150 ITGKSAQKHHQPYVLIKSGSEGIAQAAAEAKRIAAARELEKAKASLFRTVLDFAYDGII 208 >UniRef50_C5EPL2 Sigma54 specific transcriptional regulator n=3 Tax=Clostridiales RepID=C5EPL2_9FIRM Length = 640 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 171/537 (31%), Positives = 264/537 (49%), Gaps = 59/537 (10%) Query: 35 HLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVL 94 ++ + + + CDA+I G + L + P ++I+ VL Sbjct: 117 FKIDVEVHAPVRHEDLAAKLDQAIAAGCDALI-GGYSANILARQKDFPAVVIRTGEDTVL 175 Query: 95 QALAKAGKLTS-----SIGVVTYQETIP----ALVAFQKTFNLRLDQRSY------ITEE 139 QA+ +A I Y+ I L+ +++ R I+ Sbjct: 176 QAVDEAIHTVDQIRHQRIISQMYKTIIYSSKDGLLYVDAAGVIQVRNRVIRQMNGDISLM 235 Query: 140 D---------ARGQINELKANGTE---AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS 187 D + + +G E ++ + I + V S Sbjct: 236 DRPLKQALPYLYKMFHSVITSGQEESGRILTIPGTKVTVSVSCTPVIANKEISGVVFFLS 295 Query: 188 DALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGE 247 D + + + + R + +Y D++ QS ++Q +T YA S + V+I GE Sbjct: 296 DITMIQNLESQIRRKLSER-GFQAKYTFQDIIHQSRVIDQTIETARRYAASDSNVIIVGE 354 Query: 248 TGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSR 307 TGTGKEL AQ IH + + PFVA+NC A+ E+LLE+ELFGY EGAFTG+ Sbjct: 355 TGTGKELFAQGIHNS--------SSRNNGPFVAINCAALPENLLESELFGYVEGAFTGTS 406 Query: 308 RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 367 +GG+ GLFE AHGGTLFLDE+GE+ LP+Q++LLRVL+E++V R+G ++ + V+VR+ISAT Sbjct: 407 KGGKMGLFEQAHGGTLFLDEVGEISLPIQSKLLRVLQERQVRRIGDNKVIDVNVRIISAT 466 Query: 368 HCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAA 427 + ++ + +G+FRRDL YRL +LRL LPPLRER D+ L L+V P Sbjct: 467 NKSISKLSDKGQFRRDLVYRLDVLRLFLPPLRERENDVELLFLHLLQVQGRETRTP---- 522 Query: 428 LRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-------------PTPDLTPQ- 473 L Q + ++L Y + GNIREL+NM+ER ++ + P D+ P Sbjct: 523 LPQLEPGALSLLHQYPFIGNIRELKNMVERASVLKTGNIITRKNLQDALYPPDLDMDPDS 582 Query: 474 --FMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L E +++A P L +QALE+ NG +T AA LG+ R+T WR+++ Sbjct: 583 GGSLMLSAREGIKDAAALSEPERL--RQALEQCNGSRTRAARLLGMDRSTLWRKMQK 637 Score = 64.0 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 60/145 (41%), Gaps = 3/145 (2%) Query: 60 ERCDAIIAAGSNGA-YLKSRLSVPVILIKPSGYDVLQALAKA--GKLTSSIGVVTYQETI 116 + DAIIA G + VP I + SGYD+++A+++ + V+ + + Sbjct: 48 DEYDAIIARGYTAQKTVAKYKQVPTIGLSISGYDMVRAISECCEKYHPKKVAVLGFGGQM 107 Query: 117 PALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFI 176 + + F + ++ + + ED ++++ A G +A++G LA + + I Sbjct: 108 YEVKNICRFFKIDVEVHAPVRHEDLAAKLDQAIAAGCDALIGGYSANILARQKDFPAVVI 167 Query: 177 YSAATVRQAFSDALDMTRMSLRHNT 201 + D T +RH Sbjct: 168 RTGEDTVLQAVDEAIHTVDQIRHQR 192 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 142/402 (35%), Positives = 213/402 (52%), Gaps = 26/402 (6%) Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSL 197 + + V+ A A +A G + Y R + A + Sbjct: 66 EVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALEKKE 125 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 +R +Y L ++G S M +V + +R+ + VLI GE+GTGKEL A+ Sbjct: 126 LKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKELIAR 185 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH + +PFV +NCGA+ E+L E+ELFG+ +G+FTG+ + + GLF Sbjct: 186 AIHY--------NGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKE-KVGLFHH 236 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 AH GT+FLDEIGE Q +LLR L++ E+ +VGG++ + VDVR+I+AT+ NLE + Q Sbjct: 237 AHKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQ 296 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR+DLFYR++++R+ LP L+ER DI L FL++ L R ++ Sbjct: 297 GRFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKD----KRVFSGSAMA 352 Query: 438 VLLHYDWPGNIRELRNMMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAP 492 VLL+YDWPGNIREL+N++ER + VE P T F+ + K+ Sbjct: 353 VLLNYDWPGNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIV 412 Query: 493 RLLTPQ------QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L+ Q +A+ K+ G++T + LGIS TT WR++K Sbjct: 413 ETLSEQEKNAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKK 454 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 160/327 (48%), Positives = 206/327 (62%), Gaps = 15/327 (4%) Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 R +Y +++G+SP + +T YA++ VLI GE+G GKEL AQAIH E Sbjct: 317 QQRRRQNTAKYQFAELIGRSPPFLRAVRTARRYAQTDLTVLIAGESGVGKELFAQAIHNE 376 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + PFVAVNC + ESLLE+ELFGYEEGAFTGSRRGG+ GLFE AH GT Sbjct: 377 --------SRRADRPFVAVNCASFPESLLESELFGYEEGAFTGSRRGGKRGLFEAAHTGT 428 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 LFLDEIG+MPLPLQ+RLLRVL+E+EVTR+G +PVDVR+I+ATH L + + Q RFR+ Sbjct: 429 LFLDEIGDMPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQ 488 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YR++ LRL++PPLRER DI PL E+ + L L AP AA + L Y Sbjct: 489 DLYYRINTLRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAA--GLVAPWLPRLRRY 546 Query: 443 DWPGNIRELRNMMERLALFLSVEP-TPDLTPQFMQLLLPELARESAKTPAPRLLTPQ--- 498 WPGN+REL N+ ER+A+FL P D+ ++ PEL A A + + Sbjct: 547 AWPGNVRELENISERMAVFLMQYPHAADVDHDALRHDCPELFEAGAAVAADEGRSQRDRA 606 Query: 499 -QALEKFNGDKTAAANYLGISRTTFWR 524 +ALE G++ AA LGISR+T WR Sbjct: 607 LRALEACGGNRQEAARRLGISRSTLWR 633 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 13/241 (5%) Query: 1 MAHP-PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLAN 59 M++P P D P + +S ++ E + E+ A+I + F A+ + +L Sbjct: 1 MSYPDPPARADLPRLCFLSYRQIREFAMPVVAEYTGRAHIEVVDGTFGGALAIAQDRLDR 60 Query: 60 ERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPAL 119 DA ++AGSN + L++ L PV I+ G+D+LQAL +A ++ +GVV Y TIP L Sbjct: 61 GLVDAFVSAGSNASILRAGLQAPVATIQLGGFDLLQALIQARRIADRVGVVMYGRTIPEL 120 Query: 120 VAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSA 179 A + N+ + Q +Y T +DAR + +L+ + +VG+ L+ +LAE+AG+ G+ YS Sbjct: 121 DAVKDLLNIEIVQHAYQTPDDARQRFEQLRRENFQVIVGSSLVVELAEQAGLHGLLAYSL 180 Query: 180 ATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGD----------MLGQSPQMEQVR 229 A+VR+ F DA+++ R++ N + + L D ++ +P M+++ Sbjct: 181 ASVRKGFEDAIELARVARLEAGRYEQLNGVL--HSLQDAVLAVDRDHRIIAVNPSMQRLL 238 Query: 230 Q 230 Sbjct: 239 D 239 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 147/491 (29%), Positives = 235/491 (47%), Gaps = 53/491 (10%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVT-YQETIPALVAFQKTFNLRLDQRSY 135 P++++ D L A K + + +E + L + + + Sbjct: 3 QHADYPILVV-DDEQDNLDAFRFNFKRAFRLLCASSGEEALEILRDNEVAVIVTDQRMPR 61 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDL---AEEAGMTGIFIYS---AATVRQAFSDA 189 +T + + E++ + ++ A D+ A G ++ A +R + A Sbjct: 62 MTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILTHA 121 Query: 190 LDMTRMSLRHNTHDA--------TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 L+ + + A + + G+++G S + +V + A +++ Sbjct: 122 LERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTNST 181 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VL+ GETGTGKEL A AIH +++ PFV VNC A+A +LE+ELFG+E+G Sbjct: 182 VLLRGETGTGKELVAHAIH--------INSSRENQPFVRVNCAALAPGVLESELFGHEKG 233 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ R G FE+A GGTLFLDE G++P+ +Q +LLR L+E+E RVGG Q + VDV Sbjct: 234 AFTGAVAQ-RPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDV 292 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 RVISAT+ +LE ++ G FR DL+YRL++ + LPPLR+R+ D+ L F+ A + Sbjct: 293 RVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFI----AKFA 348 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLL--- 478 A+ L Y WPGN+REL N++ER + F + Sbjct: 349 RSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNA 408 Query: 479 ----------------LPELARESAKTPAPRLLTPQQ-----ALEKFNGDKTAAANYLGI 517 P L + +K A RLL ++ A+EK N + +AA LGI Sbjct: 409 TPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGI 468 Query: 518 SRTTFWRRLKS 528 +R+T + R++ Sbjct: 469 NRSTLYYRMRK 479 >UniRef50_B0K3D1 Sigma-54 factor, interaction domain-containing protein n=9 Tax=Thermoanaerobacteraceae RepID=B0K3D1_THEPX Length = 526 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 127/339 (37%), Positives = 196/339 (57%), Gaps = 29/339 (8%) Query: 207 NALRTRYVLGD-----MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 +++ D + G++P+ +++ + A + + VL++GE+GTGKEL A+ IH Sbjct: 196 KQEENKFLFHDDSFFTIPGKNPRFLEIKDLVRQIAVTDSTVLLQGESGTGKELFARYIHY 255 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 +K+HPF+A+NC AI ++LLE+ELFGYE+G+FTG+RRGG+ G FE+A+GG Sbjct: 256 --------LSPRKNHPFIAINCAAIPDNLLESELFGYEDGSFTGARRGGKPGKFELANGG 307 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEIG+MPL LQ +LLRVLE ++V R+G P+DVR+I+AT+ +L+E + FR Sbjct: 308 TIFLDEIGDMPLQLQAKLLRVLENRQVERIGATVSRPIDVRIIAATNKDLKELIDAKLFR 367 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLF+RL++ + +PPLRER DIL L + +LK PF + ++ +L + Sbjct: 368 EDLFFRLNVFPVFIPPLRERRDDILLLLDFYLKNICLEQDKPFKIFSPEAIE----ILQN 423 Query: 442 YDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQA 500 YDWPGNIREL+N++ + T P+++Q L + + + Sbjct: 424 YDWPGNIRELKNVVTYAVSICKGDIITLHYLPKYLQNGLSSTKSQFGEVKTTHPIIQVDQ 483 Query: 501 LE--------KFNG---DKTAAANYLGISRTTFWRRLKS 528 L+ K+ K A LGIS T +R L+ Sbjct: 484 LKDQLEILLAKYGNSTQSKKLIAQELGISLATLYRWLRK 522 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 117/312 (37%), Positives = 181/312 (58%), Gaps = 14/312 (4%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++ +S M V A ++A VL+EGE+GTGK + A+ IH + ++ P Sbjct: 229 LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQ--------SSRRDKP 280 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FV +NC AI ++LLE+ELFGY +GAFTG+ + + G E+A GGTLFLDEIGE+P LQ+ Sbjct: 281 FVKINCAAIPDNLLESELFGYVKGAFTGAVKD-KPGKVELADGGTLFLDEIGELPTYLQS 339 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LL +++EKE R+G + VDVR+I+AT+ +L + +++G+FR DL+YRL ++ +++P Sbjct: 340 KLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPA 399 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI L F+ + S ++ ++ + +LL+YD+PGNIREL N++ER Sbjct: 400 LRERKEDIPFLINYFIDL----YSKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIER 455 Query: 458 LALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLG 516 + + P + L + + LE N +K+ AA L Sbjct: 456 AVILAKGKFIEVSDLPDEIVYNTKILTQNDLDEEIDEKQKILRVLESVNWNKSKAAKILN 515 Query: 517 ISRTTFWRRLKS 528 I R T WR+LK Sbjct: 516 IDRVTLWRKLKK 527 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 174/533 (32%), Positives = 259/533 (48%), Gaps = 53/533 (9%) Query: 35 HLANITPIQLGFEKAVTYIRKKLANERCDAIIAAG-SNGAYLKSRLSVPVILIKPSGYDV 93 N + + + K+ E CDA+I+ +N +K+ V +I+ S + Sbjct: 116 FNINFVVYVIDNPDQIEDMVKRAIEEGCDALISGSHANKCVIKNGFKVYSGIIENSEEAI 175 Query: 94 LQALAKAGKLTSSIGV-VTYQETIPALVAFQKTFNLRLDQRSYITEEDAR-GQINELKA- 150 +AL A L ++ E + L + +D R I +A G+I + Sbjct: 176 GRALNSAASLLKNMEYEANQMEFLRLLAENVTDGLIFVDDRERIGIANANVGRIFPNRRP 235 Query: 151 -NGTEAVVGAGLITDLAEEAGMTGIF-------------------IYSAATVRQAFSDAL 190 G + +A + + Sbjct: 236 VAGKGFQESFPFMAKNYLKACREKQHLDNEIYRTRDMNIAVDFTPVMIGGEYKGMIITIH 295 Query: 191 DMTRMSLRHNTHDATRN--ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 D+ R+ R + N L +Y D++ QSP ME V + +A ++ VLI GET Sbjct: 296 DIGRLQQREAQIRSKLNEMGLYAKYQFSDIIHQSPVMEHVIERAEKFAAVTSNVLIYGET 355 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL AQ+IH +KS PFVA+NC + E+LLE+ELFGYEEGAFTG+ + Sbjct: 356 GTGKELVAQSIHNA--------SKRKSGPFVAINCASFPENLLESELFGYEEGAFTGAVK 407 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GG+ GLFE AHGGTLFLDE+ E+P+ Q +LLRVL+E+EV RVGG + V +DVR+I+AT+ Sbjct: 408 GGKPGLFEQAHGGTLFLDEVSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATN 467 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 NL++ G FR DL YRL +L L LPPLR+R DI LAE +L F Sbjct: 468 KNLKQMTLDGLFREDLLYRLDVLNLPLPPLRKRREDIRLLAEHYL----MEYKEQFETCA 523 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLAL--------FLSVEPTPDLTPQFMQL-LL 479 + + T+L Y + GNIRELRN++ER+++ L VE + L Q+ Sbjct: 524 DHFTEDAMTLLSSYPFMGNIRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTA 583 Query: 480 PELARESAKTPAPRLL------TPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++ R + AP + ++ L++ +K+ A LG++RTT WR++ Sbjct: 584 GQVGRIQDQAAAPAYIRNIQKEEIERLLKECGYNKSEVARRLGLNRTTLWRKM 636 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 6/155 (3%) Query: 58 ANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTS--SIGVVTYQET 115 + CD +IA G + ++ R + ++ I +G D++ A+A+ + T IG++ Sbjct: 46 VEDGCDLVIARGYSIHVIRERFNGAIVEIPITGSDIVNAIAQCREHTDCQKIGLIGDYSN 105 Query: 116 IPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMT--- 172 + + + FN+ + + G +A++ + G Sbjct: 106 MKDIQSMSSLFNINFVVYVIDNPDQIEDMVKRAIEEGCDALISGSHANKCVIKNGFKVYS 165 Query: 173 GIFIYSAATV-RQAFSDALDMTRMSLRHNTHDATR 206 GI S + R S A + M N + R Sbjct: 166 GIIENSEEAIGRALNSAASLLKNMEYEANQMEFLR 200 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 128/333 (38%), Positives = 199/333 (59%), Gaps = 23/333 (6%) Query: 206 RNALRTRYVLGDM----LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 R ++ + +G S +++ + +L A+S++ VL+ GE+GTGK L A+AIH Sbjct: 414 RQEIQLMETFQGISQQIIGDSKKVKTAKNFVLKAAQSASTVLLLGESGTGKGLFARAIH- 472 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 +K PF+ VNC AI E+LLE+ELFGYEEG+FTG+++GG+ G FE+A+GG Sbjct: 473 -------FSGNRKDGPFIKVNCSAIPETLLESELFGYEEGSFTGAQKGGKIGKFELANGG 525 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEIG+MP +Q ++LRVL+E+E+ R+GGH +P+DVRVI+AT+ +L E+++ RFR Sbjct: 526 TIFLDEIGDMPFNMQAKMLRVLQEREIERIGGHHSIPIDVRVIAATNRDLREEIKANRFR 585 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL +L + +PPLRE +DI L +S ++ P ++ + V Sbjct: 586 EDLYYRLDVLSISIPPLREMASDIPVLTQSLIERICKKHHVP----PKKVSEEVMGVFCR 641 Query: 442 YDWPGNIRELRNMMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL- 495 Y WPGN+REL NM+ERL ++++ P Q +Q + S + Sbjct: 642 YPWPGNVRELENMLERLLNLVEEDIINIDHLPAHLWQHIQSSRYLASGHSLDNMTSEVER 701 Query: 496 -TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL+ +++ AA LG+ R+TF+ +LK Sbjct: 702 DAIINALKATKNNRSKAAKLLGLHRSTFYEKLK 734 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 159/453 (35%), Positives = 220/453 (48%), Gaps = 36/453 (7%) Query: 93 VLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANG 152 +L+ L + SI + ++ I + L + I + Q+ N Sbjct: 20 ILRDLLEDEGYQVSIAL-DGEQVIDQVQQSSPDLILMDVRMPKIDGIEVLKQLRARGMNV 78 Query: 153 TEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTR 212 V+ A + +A G + Y D D+TR R +R R Sbjct: 79 PMIVMTAFGNSSTTIKAMQLGAWDYITKPF-----DLDDITRTINRFFEQQKLSTKVRGR 133 Query: 213 Y-------VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 ++G SP M++V +TI L A S A VLI GETGTGKEL A+ IH Sbjct: 134 AEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAETIHY---- 189 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 P V VNC A+ E+LLE+ELFG+E+G+FTG+ R R G FE+AH GT+FL Sbjct: 190 ----NSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQ-RKGRFELAHKGTIFL 244 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGEM L Q +LLRVL+E+E RVGG + VD RVI+AT+ LEE++ G+FR DLF Sbjct: 245 DEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLF 304 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL+++ + LPPLRER DI L + FL+ P ++ + + VL+ +DWP Sbjct: 305 YRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPAS----ISEEAIKVLMEHDWP 360 Query: 446 GNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL---------- 495 GN+REL N +ER + F Q+ S R L Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESK 420 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +ALEK GD AA L IS + R+L++ Sbjct: 421 IILEALEKAKGDHALAAEILDISESELKRKLRT 453 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 138/454 (30%), Positives = 227/454 (50%), Gaps = 25/454 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ V +LAK + V E + + L + + Sbjct: 8 LLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRGTDGVEL 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + +++EL ++ + A G + Y + + + +L H Sbjct: 68 QRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDP--EETAHLVSKALAHKR 125 Query: 202 HDATRNALRTR---YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + L+ + + D++ +S M+++ I A + A VLI GE+GTGKE+ A+A Sbjct: 126 TEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH A ++ HP V V+CGA+ E+LLE+ELFG+E+GAFTG++ + G FE+A Sbjct: 186 IH--------ALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYR-KKGKFEVA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGT+FLDEIG++ L QT LLRVL+E+E+ RVGG+QP+ VD R+++AT+ +LE+ +++G Sbjct: 237 EGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLFYRL++ R++LPPLR+R DI L F K ++ + + + + Sbjct: 297 HFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVT----RVASPAMNM 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ 498 L Y WPGN+REL N +ER + + ++ + L + Sbjct: 353 LQQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIE 412 Query: 499 Q-----ALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L++ N ++T AA L I R T ++K Sbjct: 413 KEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIK 446 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 142/444 (31%), Positives = 221/444 (49%), Gaps = 25/444 (5%) Query: 92 DVLQALAKAGKLTSSIGVVTYQETIPA-----LVAFQKTFNLRLDQRSYITEEDARGQIN 146 D + AL + G + T L L + + D + Sbjct: 9 DEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGIDLLRWLK 68 Query: 147 ELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATR 206 + + ++ A + A EA G + Y V L + + + Sbjct: 69 HCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPV----DTELLLNVIKEAIEKSKGIQ 124 Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 + +++G+S ++++ + + A S+A VLI GE+GTGKEL A+AIH+ Sbjct: 125 KLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHK----- 179 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 +KS PF+ V+C I E+LLE+ELFG+E+GAFTG+ + GL E+A+ GT+FLD Sbjct: 180 ---NSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATER-KTGLIELANEGTVFLD 235 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EIGE+P+ LQ +LLR L+EKE+ R+G Q + VDVRVISAT+ +LE+ +++G FR DL++ Sbjct: 236 EIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYW 295 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 RL+++R+ LPPLRER DI L FL + P + Q L++Y WPG Sbjct: 296 RLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKP----IPQLEPEVMNALINYYWPG 351 Query: 447 NIRELRNMMERLALF--LSVEPTPDLTPQFMQLLLPELARESA-KTPAPRLLTPQQALEK 503 NIREL N++ER + + L + + + +E+ +AL Sbjct: 352 NIRELANVIERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKALILKALNS 411 Query: 504 FNGDKTAAANYLGISRTTFWRRLK 527 ++T AA LGISR ++K Sbjct: 412 TGWNQTKAAEILGISRKQLRTKMK 435 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 148/383 (38%), Positives = 209/383 (54%), Gaps = 25/383 (6%) Query: 157 VGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHD--ATRNALRTRYV 214 + A + A EA G + Y + + R + + L +Y Sbjct: 84 MTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLKRIYQSRKVEVENLQLKRQLNWKYG 143 Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 L ++G S M+ V + I A S A VL+EGE+GTGKEL A AIH+ +K Sbjct: 144 LEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKELVAHAIHQ--------LSPRK 195 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 + PFV V+C A++ LLE+ELFG+E+GAFTG+ R G FE A GTLFLDEIGE+ LP Sbjct: 196 NFPFVVVHCAALSPQLLESELFGHEKGAFTGAIER-RIGRFEEAARGTLFLDEIGEIDLP 254 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 Q +LLR L EK + RVG ++ V VDVRVI+AT+ NLE+ +++G+FR DLF+RL+++R+ Sbjct: 255 TQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVVRIV 314 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLRER DI LA++FL A + + +LL YDWPGN+REL+ Sbjct: 315 MPPLRERKEDIPLLAQAFLAEFAAENGKKID----RLSPEAMKILLEYDWPGNVRELKMA 370 Query: 455 MERLALFLSVEPT-PDLTPQFMQLLLPELAR----ESAKTP-----APRLLTPQQALEKF 504 +E + E P P+ +++ P L+ ES++ AL Sbjct: 371 IEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAEKRLILHALRVC 430 Query: 505 NGDKTAAANYLGISRTTFWRRLK 527 G KT+AA LGISR T R++K Sbjct: 431 QGKKTSAAKKLGISRKTLQRKIK 453 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 136/408 (33%), Positives = 220/408 (53%), Gaps = 31/408 (7%) Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 + I E+ I + K G + +V A T ++ + + + ++ Sbjct: 181 KIAIEEKKKVTVIQKTKT-GRKLLVTA---TPFFDKDNNIKRIVSISKDITDEEKLKTEL 236 Query: 193 TRMSLRHNTHDATRNALRTRY-VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + ++ ++LR + +++ +S QME++ + + A + + +LI GETG G Sbjct: 237 KQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTILIYGETGVG 296 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KE+ A+ IH + PF+ +NCGAI E+LLEAELFGYE+GAFTG++ G+ Sbjct: 297 KEVLAKYIHNIS---------RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGK 347 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 GL E+A GTL LDEI E+PL LQ +LLRVL+EKE RVGG +P+ VDVR+I+A++ +L Sbjct: 348 PGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDL 407 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 +E +++G+FR+DL+YRL+++ + +PPLRERV DI LA FL + +Q Sbjct: 408 KELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGH-----SKQL 462 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQ---------LLLP 480 + + Y WPGN+REL N++ER+ + + DL + + + + Sbjct: 463 TNEVMEIFMKYPWPGNVRELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVS 522 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L + +QA+E+ G AA LG+ ++T R+LK Sbjct: 523 RLMPLKEASALVEYQLIKQAIEEC-GSSYKAAEVLGVDQSTIIRKLKK 569 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 130/400 (32%), Positives = 209/400 (52%), Gaps = 27/400 (6%) Query: 141 ARGQINELK-ANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 ++++L+ NG VV I + G G+ ++S + + + + Sbjct: 319 GVAELHQLQFINGNPHVVSRMPIVRDGKALGAVGMILFSNFKDVRNLAQKFIRLDQKVAY 378 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + RN + + ++ +++++ + A+SS+++LI GE+GTGKEL AQ+I Sbjct: 379 YKNQ-IRNDMSNKITFDQIITSHEAFKKIKERAEIAAQSSSSILITGESGTGKELMAQSI 437 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + + V VNC AI LLE+E FGY GAFTG+++ G+ G +A Sbjct: 438 HEAGVS--------RDKRLVKVNCAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALAD 489 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG+M LQ++LLRVL++K +G ++ V RVI+AT+ +L + +Q+ R Sbjct: 490 GGTLFLDEIGDMSPNLQSKLLRVLQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKR 549 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ +PPLRER DI+ L F++ + +A++ + TVL Sbjct: 550 FRGDLYYRLNVIHFHIPPLRERPQDIILLVHFFIE----KYNHILGSAIQDISDDAMTVL 605 Query: 440 LHYDWPGNIRELRNMMERLALFLSVE--PTPDLTPQFMQ-----------LLLPELARES 486 L + WPGN+REL N++ER+A F+ DL P + L R Sbjct: 606 LEHTWPGNVRELENVVERVANFVKGNLVDIDDLPPNLKEKEKKSPSFMAGSPLSTKQRLH 665 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L Q AL + +G+K AA LGISR+ + ++ Sbjct: 666 KSRDDHDKLAIQSALREADGNKAKAAKILGISRSWLYTKM 705 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 456 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 131/359 (36%), Positives = 196/359 (54%), Gaps = 21/359 (5%) Query: 175 FIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILL 234 S+A + + L + L+ R +++G S +M+ V Q + Sbjct: 236 VSLSSAPLESQDGEFLGAVLVIRDITRLVDLERELQERNQFHNIIGASHKMQAVYQLLEN 295 Query: 235 YARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAE 294 A VLI GE+GTGKEL A+A+H + PFV+VNC A+AE+LLE+E Sbjct: 296 LADFETTVLITGESGTGKELVAKALHHTG--------SRAFKPFVSVNCSALAENLLESE 347 Query: 295 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH 354 LFG+ +GAFTG+ R + G F+ AH GTL LDEIG++ +Q +LLRVL+E+E RVG Sbjct: 348 LFGHVKGAFTGAIRDYQ-GRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDV 406 Query: 355 QPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK 414 QP+ VDVRVI+ T+ +L+E + G FR DL+YRL+++ ++LPPLRER DI LA+ F Sbjct: 407 QPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHF-- 464 Query: 415 VSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL-----SVEPTPD 469 A F+ + ++Y WPGN+REL + +ER + S+E P Sbjct: 465 --TARFEKKFNITIPGVSDKVMNAFMNYHWPGNVRELEHSIERATVLCRDKMISLEHIPG 522 Query: 470 LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L P L ++ A ++ AL++ +K AA LG+SR T +R+++ Sbjct: 523 EIAEAYSLSGPRLKKQPAADEPNEII---DALKRTGWNKAKAARLLGVSRKTIYRKIEK 578 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 456 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 134/331 (40%), Positives = 199/331 (60%), Gaps = 28/331 (8%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y D++G+SPQ+++V + L ++S + VLI GE+G GKEL AQ+IH Sbjct: 128 YTFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSIHNA--------SN 179 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 + PF+A+NCGAI ++L+E+ELFGYEE +FTGSR+GG+ G FE+A GGT+FLDEI EMP Sbjct: 180 VSNGPFIALNCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDEICEMP 239 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR 392 + +Q LLRV++E VTR+GG +P++VR+I+AT+ NL+E++++G FR DL+YRL+++ Sbjct: 240 IEMQVTLLRVIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYRLNVMP 299 Query: 393 LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELR 452 L LPPL++R+ D+ L FL + L + Q ++ Y WPGNIREL Sbjct: 300 LHLPPLKDRLGDVPILINYFLNIKSQKLHK----GIPNINQKLYKKMISYCWPGNIRELE 355 Query: 453 NMMERLALF------------LSVEPTPDL--TPQFMQLLLPELARESAKTPA--PRLLT 496 N +E + T +L L LPE E++ P Sbjct: 356 NCVENIVNLNGSTSYEINFDECHCLKTDNLGNPINPNSLDLPESYNENSIKPLIILEKEA 415 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++AL F+G+ T A+N LGISR + ++K Sbjct: 416 IEKALCTFDGNITKASNALGISRNALYNKIK 446 >UniRef50_Q8R5U6 NtrC family Transcriptional regulator, ATPase domain protein n=4 Tax=Clostridia RepID=Q8R5U6_THETN Length = 592 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 143/432 (33%), Positives = 230/432 (53%), Gaps = 49/432 (11%) Query: 109 VVTYQETIPALVAFQ------KTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLI 162 VVT + + + F ++L Q + ++D G++ ++ G + V+ + I Sbjct: 193 VVTVNKYLKEKLNVSEKTPVKSIFPVKLLQE--LEKKDFEGEVGPVEIKGIKFVINSSPI 250 Query: 163 TDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQS 222 + G +F D ++M + D++G+S Sbjct: 251 AVKGQRVGTVLVF--------------SDFSKMQESVYKASKMSEIV----TFDDIVGES 292 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 ++ + + A S VL+ GE+GTGKEL A+AIH + +K+ F+ +N Sbjct: 293 DAIKYAKSQAIQIADSEVPVLLLGESGTGKELFARAIHFQ--------SSRKNEIFMPIN 344 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 CGAI E+L+E+ELFGYE+G+FTG+ G+ G FE+A GT+FLDEIG++PL +Q +LLR Sbjct: 345 CGAIPETLIESELFGYEKGSFTGANVTGKIGKFELAKDGTIFLDEIGDLPLSMQVKLLRA 404 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 LEEKE+ R+GG+ P+ V+ R+ISATH +L + + +G+FR DLFYRL+++ + +PPLRER Sbjct: 405 LEEKEIVRIGGYTPIKVNPRIISATHKDLYQMVLEGKFREDLFYRLNVVPIVIPPLRERG 464 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 DI+ LA FL+ + + ++ + SE +LL Y +PGNIRELRN++E F Sbjct: 465 YDIIILANYFLE----KFNKIYGKNIKGFSKESEKLLLSYPFPGNIRELRNLIEYAVNF- 519 Query: 463 SVEPTPDLTPQFMQLLLPELARESAKTPAP-----RLLTPQQALEKFNGD---KTAAANY 514 E ++P+ + L E KT A ++ + ++ D K A Sbjct: 520 --ESKDYISPETINQRLHRKTLEEGKTLAEMVKNYEKNVIKEYMLRYGSDVESKKLIAKK 577 Query: 515 LGISRTTFWRRL 526 LGIS T +R++ Sbjct: 578 LGISIATLYRKM 589 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 147/399 (36%), Positives = 214/399 (53%), Gaps = 24/399 (6%) Query: 140 DARGQINELKANGTEAV---VGAGLITDLAEEAGMTGIFIYSAATV-RQAFSDALDMTRM 195 D + + G++AV + A + A EA G Y + A L+ Sbjct: 70 DGINLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALE 129 Query: 196 SLRHNTHDA-TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 LR A R +R RY +++G +P++ V + + A + A VLI GE+GTGKEL Sbjct: 130 KLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKEL 189 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 AQA+H E + F+ VNC A++E+LLE+ELFG+E+GAFTG+ G + G Sbjct: 190 FAQALHEE--------SPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAI-GRKEGR 240 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A GGTLFLDEIG++ LQ +LLRVL+++E RVGG Q + VDVR+++AT+ +L + Sbjct: 241 FELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAE 300 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ GRFR DL+YRL+++ + LPPLR+R DI L F+ S + +R Sbjct: 301 VKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFID----KYSKAYGKDIRGLAPG 356 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSV-EPTPDLTPQFMQLLLPELARESAKTPAPR 493 + +L +DWPGN+REL N++ER + E T D P ++ P A P Sbjct: 357 TLNAVLSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGAT 416 Query: 494 LLTPQ-----QALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + + LE G + AA LGIS RLK Sbjct: 417 LYEIEREAILRTLEMVGGSTSRAAEILGISVRKIQYRLK 455 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 18/364 (4%) Query: 167 EEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQME 226 E AG + S + ++ D + D +L R M+ S +M+ Sbjct: 218 ERAGQ--VVSLSTSPLQNKEGDVFGAVMVVRDETRLDDLERSLNKRQSFHRMIATSSKMQ 275 Query: 227 QVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 286 QV I A+ + VLI GE+GTGKEL A+A+H +K+ P V VNC A+ Sbjct: 276 QVFGLIETLAQVPSTVLILGESGTGKELVAEALH--------LSGPRKNRPLVKVNCAAL 327 Query: 287 AESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK 346 +++LLE+ELFG+ +G+FTG+ + G F+ A GGT+FLDEIG++ +Q RLLRVL+EK Sbjct: 328 SDTLLESELFGHVKGSFTGAVKD-HVGRFQKADGGTIFLDEIGDISPRMQLRLLRVLQEK 386 Query: 347 EVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADIL 406 EV R+G PV VDVR+++AT+ +LEE ++ G FR+DL+YRL ++ L LPPLRER DI Sbjct: 387 EVERIGDSTPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKVITLALPPLRERKEDIP 446 Query: 407 PLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP 466 P+ + F++ L L+ Q + YDWPGN+R+L + +E + + + EP Sbjct: 447 PMVDHFIQRYNEVLGR----NLQGVDQEVMRAMQAYDWPGNVRQLEHAIEHILIHCT-EP 501 Query: 467 TPDLT--PQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWR 524 L P+ + + + A + AL+K + +K AA LGI R T +R Sbjct: 502 LASLAHVPEEILQGEQAVGKYCADSEEQEQQQILAALDKTDWNKAKAARLLGIDRKTLYR 561 Query: 525 RLKS 528 +++ Sbjct: 562 KIEK 565 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 136/346 (39%), Positives = 195/346 (56%), Gaps = 30/346 (8%) Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + L + +GD++ QS ME + Q + + A+S + VLI GETGTGKE+ A+A Sbjct: 328 QQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARA 387 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH+ ++ P V +NC AI SLLE+ELFG+++GAFTG+ R G FEIA Sbjct: 388 IHQ--------LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GRFEIA 438 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDEIG++PL LQ +LLRVL+E+E+ R+GG + +PV+VRVI+AT+ +L + ++ Sbjct: 439 DGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDR 498 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 +FR DLFYRL++ L+LPPLR+R DI LA+ F + ++ A + L+ Sbjct: 499 QFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQ---- 554 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESA----------- 487 L+ +DWPGN+REL N++ER L LLP L +SA Sbjct: 555 LMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHP 614 Query: 488 ---KTPAPRLLTPQQALEKFNGDKT---AAANYLGISRTTFWRRLK 527 + Q L + NG AA LG+ RTT R++ Sbjct: 615 TTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 139/382 (36%), Positives = 204/382 (53%), Gaps = 25/382 (6%) Query: 155 AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYV 214 A++ A I E T + ++ +Y Sbjct: 214 AIISAVPIYINGELVAAVSTDRDITETANLSVELETTKEKLD---YLQMEVNKINENQYS 270 Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 +LG+S +++ A ++++VLI GE+GTGKE+ A+AIH+ G+K Sbjct: 271 FDKVLGKSQVIKEKIDKAKQVASTNSSVLIGGESGTGKEVFARAIHQV--------SGRK 322 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFVA+NC AI E+L E+E+FGYE GAFTG+ G+ G E+A GTLFLDEIG+MPL Sbjct: 323 -GPFVAINCSAIPENLFESEIFGYEGGAFTGALNKGKIGKVELAENGTLFLDEIGDMPLY 381 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 +Q +LLRVL+EK++ RVGG +PV VDVR+ISATH NL+ + +G+FR DLFYRL+++ +Q Sbjct: 382 MQAKLLRVLQEKQIVRVGGEKPVDVDVRIISATHRNLKTMVMEGKFREDLFYRLNVVNIQ 441 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LP L+ RV DI FL +A + ++ + L++YDWPGNIREL+N Sbjct: 442 LPSLKYRVEDI----HIFLNQFMAEFCKENNLSIPKISMEVFHTLMNYDWPGNIRELKNT 497 Query: 455 MERLALFLSV---------EPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN 505 +E L +F E + + PE +T ++A+E N Sbjct: 498 VEHLVVFSKNGEIIMSSIPEHILEKIGDSQYVDTPENYDLQENIKHIETVTIRKAMEVVN 557 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 G+K AA L I R+T + ++K Sbjct: 558 GNKMQAAKLLNIPRSTLYYKIK 579 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 146/356 (41%), Positives = 201/356 (56%), Gaps = 19/356 (5%) Query: 179 AATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS 238 F D + + R + + RY D++ QSP M ++ + +A + Sbjct: 282 TVGAVATFQDVSHLQAVEARARQELYLKGHV-ARYTFEDIVTQSPVMAKIIERARQFAAA 340 Query: 239 SAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 298 A VLI GETGTGKE+ AQ+IH +++ PFVAVNC A+ E+LLE+ELFGY Sbjct: 341 EATVLINGETGTGKEMVAQSIHNA--------SRRRNGPFVAVNCAAVPENLLESELFGY 392 Query: 299 EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVP 358 EEGAFTG+R+GG+ GLFE+AHGGTLFLDEIGE+ L LQ RLLRVL++K + RVGG + +P Sbjct: 393 EEGAFTGARKGGKKGLFELAHGGTLFLDEIGELSLNLQARLLRVLQQKAIMRVGGDRVLP 452 Query: 359 VDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA 418 VDVR+I+ATH NL++ + + FRRDL+YRL++L++ LPPLRER D+ L +K + Sbjct: 453 VDVRIIAATHRNLKDAIARDAFRRDLYYRLNVLQINLPPLRERPEDLPLL----IKALVE 508 Query: 419 ALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD------LTP 472 +S + + Y WPGN+REL N++ERL + S E L P Sbjct: 509 KISRRAGRLPPIFSEEIIARMQAYSWPGNVRELENILERLVVLRSGEEVEAGDLDEILEP 568 Query: 473 QFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 Q ++ L +K LG+S+TT WRRLKS Sbjct: 569 AENQPQPVLQLALRGTLAEMEGEIIRRTLALTGNNKEETCRRLGLSKTTLWRRLKS 624 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 5/202 (2%) Query: 19 VTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR 78 T L L R + E D + G + + L + + II+ G + + Sbjct: 10 YTDLAALARQVCEELDEDV---AVATGDLAEGVRVARDLVTKGAEVIISRGGTATAISRQ 66 Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + VPV+ I S +D+++ALA+A L S IGV ++ I + + + +++ E Sbjct: 67 VEVPVVEIAVSAFDLIRALARARDLGSYIGVAGFRNVIYGTKSLESALGVHIEELIIEAE 126 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSDALDMTRMSL 197 E+A G I E ++ G E +VG + A+E G+ I + S + QA +A ++ + Sbjct: 127 EEAAGIIAEGRSMGLEVIVGDAVSVRSAKEMGLQAILVTSGKEAISQAIREAREVAMVRR 186 Query: 198 RHNTHDATRNALRTRYVLGDML 219 R A+ + ++ Sbjct: 187 RERARAEQFKAILD-FAYEGIV 207 >UniRef50_B2TBW4 Proprionate catabolism activator, Fis family n=7 Tax=Burkholderiaceae RepID=B2TBW4_BURPP Length = 678 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 180/536 (33%), Positives = 253/536 (47%), Gaps = 72/536 (13%) Query: 48 KAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSI 107 V LA E C II G + + + + L A+ +A + + + Sbjct: 160 DEVRLAVDSLAAEGCSVIIGPGM-ACDFAQQAGLASVFLY-----SLGAVEEAFERSVEL 213 Query: 108 GVVTYQ-------------ETIPALVAFQKTFNLR------LDQRSYITEEDARGQINE- 147 V+ Q + AF + LD E+D Q+ Sbjct: 214 ARVSRQKESKRVRLNTIVAHLRDGVAAFDDAGQVEAVNPAMLDLLGLDREQDVPAQVERA 273 Query: 148 LKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL-------RHN 200 + E + I + E+ G + + V Q +T R Sbjct: 274 VGPLLRETIEHNLPIEERIEQIGGRALIVNCVPIVEQGVRSGSVITLQDALVAQRIDRSL 333 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 L R+ L D++G S +E+VR+ A A VL+ GE+GTGKEL AQ IH Sbjct: 334 RTSQRPKHLVARHQLDDLIGNSAALERVRRLARAGAAHDATVLLSGESGTGKELVAQGIH 393 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 ++ +PFVA NC A+ E L+E+ELFG+EEGAFTG+RRGG+ GLFEIAH Sbjct: 394 NA--------SRRRGNPFVAFNCAALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHT 445 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIGEMP LQ+RLLRVL+E+EV ++G + PVDVRVI+ATH +L ++QG F Sbjct: 446 GTIFLDEIGEMPAALQSRLLRVLQEREVMKLGSGRATPVDVRVIAATHRDLHALVEQGAF 505 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL++RL++L+L+LPPLR+R D+ LA L S A + L + Sbjct: 506 RADLYFRLNLLQLKLPPLRDRRDDVPQLARYLLSRSALQYGLT-EGASERVLAFLAPLFE 564 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR---------------- 484 HY WPGN+REL N++ R A++ Q Q + PE R Sbjct: 565 HYAWPGNVRELENLLTRAAIYCG--DAAGDAGQDWQAMFPEFGRMKAAAATLSDFGVSGT 622 Query: 485 -------ESAKTPAPRLLTPQQ-----ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A PAP ++P + ALE+ G++ AA+ LGI RTT WR LK Sbjct: 623 KNGANGVNAAAEPAPSRISPTRGDVLHALEQAGGNRAAASRALGIGRTTLWRLLKD 678 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 61/201 (30%), Positives = 112/201 (55%), Gaps = 2/201 (0%) Query: 11 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGS 70 +P I VS++RL L ++ + A I ++ G+ AVT ++ + D ++AAGS Sbjct: 30 RPGIALVSISRLQSLCETVAPRYAGRAKIFSVREGYGAAVTALQAYVDAGSVDVVLAAGS 89 Query: 71 NGAYLKSRLSVPVILIKPSGYDVLQALAKAGKL--TSSIGVVTYQETIPALVAFQKTFNL 128 NGAYL+ L+VPV+++K +G+DVL A+ +A + IG+V ++ L + Sbjct: 90 NGAYLRDNLNVPVVMVKVNGFDVLSAITRATTTWPNAQIGLVLHETISHELADLSAWLKV 149 Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 L QR+Y + ++ R ++ L A G ++G G+ D A++AG+ +F+YS V +AF Sbjct: 150 SLKQRAYRSVDEVRLAVDSLAAEGCSVIIGPGMACDFAQQAGLASVFLYSLGAVEEAFER 209 Query: 189 ALDMTRMSLRHNTHDATRNAL 209 ++++ R+S + + N + Sbjct: 210 SVELARVSRQKESKRVRLNTI 230 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 203/367 (55%), Gaps = 25/367 (6%) Query: 170 GMTGIFIYSAATVRQAFSDALDMTRM-----SLRHNTHDATRNALRTRYVLGDMLGQSPQ 224 G ++ S ++ + + + + +R + T+ +L D++ S + Sbjct: 158 GRRLHYLTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSLN---SFNDIIYTSEK 214 Query: 225 MEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 284 M V + AR+ VLI GE+GTGKEL A+AIH E +++ PFV +NC Sbjct: 215 MRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIHLE--------SPRRTKPFVPLNCA 266 Query: 285 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 344 A+ ESLLE+ELFGY EGAFTG+++GG+ GL E AH GTLFLDEI E+P LQ +LLRVL+ Sbjct: 267 AVPESLLESELFGYVEGAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQ 326 Query: 345 EKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVAD 404 E +V R+GG + +PVD+R+I+AT+ NLE +++G+FR DL++RL++ LQ+PPLRERV D Sbjct: 327 EGKVRRIGGQEEIPVDIRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVED 386 Query: 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS- 463 I L FL + + + + L Y WPGN+REL+N++ER Sbjct: 387 IEVLTYHFLNTFAKRRGIQYF----EITENALNKLKAYSWPGNVRELQNVIERALTLADD 442 Query: 464 --VEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTT 521 +E + E A + L ++AL+++ AA LG++ TT Sbjct: 443 GVIEAKDIILDNPQNTYFVARTLEEAVNQVEKEL-IERALKQYP-SIRQAARSLGVTHTT 500 Query: 522 FWRRLKS 528 ++K Sbjct: 501 LRNKIKK 507 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 142/409 (34%), Positives = 218/409 (53%), Gaps = 23/409 (5%) Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV-- 182 +L++ + +A +L+ ++ A D A A G + Y Sbjct: 54 IVDLKMPGMDGLQVLEAAK---KLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDP 110 Query: 183 RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAV 242 + + + R AL+ Y D+L +SP M+ V + ARS++ + Sbjct: 111 EELSIMMQKIVSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTI 170 Query: 243 LIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGA 302 L+ GE+G+GKE+ A+A+H A + PFVAV+C A+ ESLLE+ELFG+E+G+ Sbjct: 171 LVLGESGSGKEVLARAVH--------AESPRAGGPFVAVSCAALTESLLESELFGHEKGS 222 Query: 303 FTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVR 362 FTG+ R G FE AHGGTLFLDE+G++ LQ LLRVLEE+ RVGG++P+ VDVR Sbjct: 223 FTGAI-SRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVR 281 Query: 363 VISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSA 422 +I+AT+ +L +G+FR DLFYRL+++ + +PPLRER DI L E+F++ LS Sbjct: 282 IIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVE----RLSV 337 Query: 423 PFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDL-TPQFMQLLL 479 + + L+ +DWPGN+RELRN++ER A+ +V DL P ++ Sbjct: 338 EMKRRIEGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAAS 397 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 S + R + L NG+ + +A LGI R T + +++ Sbjct: 398 KPGTLASLEEVEKRHVA--AVLAHANGNVSQSARILGIDRVTLYNKMRK 444 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 139/334 (41%), Positives = 191/334 (57%), Gaps = 32/334 (9%) Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 D++GQS ++ +V + L A S + +L+EGE+GTGKE+ AQAIH + Sbjct: 344 HFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFAQAIHNA--------SSR 395 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 + PF+AVNCGAI LL +ELFGY +GAFTG+RRGGR G FE+A GGT+FLDEIGEMPL Sbjct: 396 RDAPFIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGTIFLDEIGEMPL 455 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 Q LLRVL+E+ VTR+GG + +PVDVRVI A++ L E++++G FRRDLFYRL+++ + Sbjct: 456 GKQVSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRRDLFYRLNVIAI 515 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 LPPLR+R DI L FL+ L Q L YDWPGN+REL+N Sbjct: 516 TLPPLRQRKEDIPLLFHHFLQDISQKLGVK----TPQVETEVIHSLQDYDWPGNVRELQN 571 Query: 454 MMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLT---------------- 496 ++ER+ + PQ + +E A +LL+ Sbjct: 572 VVERMVNIAEESRISREHLPQEISHPAARSLKELANCEDSQLLSLSTERRKRKEMEQERE 631 Query: 497 ---PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L G+ + A LG+SR T +R++K Sbjct: 632 QEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIK 665 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 208/411 (50%), Gaps = 22/411 (5%) Query: 122 FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT 181 F + R ++ R ++ GT ++ A + + G+ T Sbjct: 175 ICSFFTNLVVTRVNKEWQEIRS-LHHQPVPGTHVLINATPVRLG--PKVIGGVTAERDVT 231 Query: 182 VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 + L+ ++ + + R + G ++ ++ A +SA Sbjct: 232 EIVQLNQKLNQASSQVQRLEKEIDK-FSTDRNPFAAVKGHHKRLTELINVARKAALTSAV 290 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VL+ GE+GTGKEL A+AIH + F +NC AI SL E+E+FGYE G Sbjct: 291 VLLRGESGTGKELFAKAIHEA--------SPRIDKKFCVINCAAIPPSLFESEMFGYESG 342 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ + G+ G+FE+A GGTLFLDEI E+PL +Q +LLRVL++ R+GG P+ VDV Sbjct: 343 AFTGADKKGKIGVFEMADGGTLFLDEISELPLDMQVKLLRVLQDGVFFRIGGSTPIKVDV 402 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 R+I+AT+ +LE+ M G FR DL+YRL+++ L++PPLRER DI L FL+ + Sbjct: 403 RIIAATNRSLEDMMAHGTFREDLYYRLNVVSLEIPPLRERREDIPELVYLFLQEFSQLYN 462 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLP 480 S + L Y WPGNIR+L+N++ER+ + + + P+ ++L Sbjct: 463 KQISKLEPGVM----ATFLAYSWPGNIRQLKNIIERMVILTEGDTVLESAIPESLKLSSR 518 Query: 481 ELARE-----SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + ++ T + L++ NG+++ AA LGI R+T + ++ Sbjct: 519 QDQATATIGLASVTEQTERELIIRTLKQVNGNRSEAARMLGIPRSTLYYKM 569 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 158/434 (36%), Positives = 228/434 (52%), Gaps = 22/434 (5%) Query: 102 KLTSSIGVVTYQETIPALVAFQKTFNLRLD-QRSYITEEDARGQINELKANGTEAVVGAG 160 ++ + V T A + + +D + G+ EL + V+ Sbjct: 35 RMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMNGIQVIGKCKELAPDTDAVVLTGK 94 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH--NTHDATRNALRTRYVLGDM 218 D A A G F Y + AL + R N A ++ L ++ Sbjct: 95 SSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAKREWVNKCRALKHQLERLEGKTEL 154 Query: 219 LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPF 278 +G S M+QVR+ I A + + VL+ GETGTGKEL A+A+H++ + PF Sbjct: 155 VGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELVARAVHQQ--------SLRAEKPF 206 Query: 279 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTR 338 VAVNCGA+ ESL+E+ELFG+ +G+FTG+ R GLFE+AHGGT+FLDEIGE+P +Q + Sbjct: 207 VAVNCGALPESLIESELFGHRKGSFTGAD-DHRVGLFEVAHGGTIFLDEIGELPKSMQAK 265 Query: 339 LLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPL 398 LLRVLE E+ RVG + VDVRV+ ATH NL E ++ G FR DL YR++ L +PPL Sbjct: 266 LLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDLMYRINTFELHIPPL 325 Query: 399 RERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERL 458 RER+ DI LA L+ L L A + + +Q +L + WPGN+REL N++E Sbjct: 326 RERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQ----LLEKHGWPGNVRELANVIEHA 381 Query: 459 ALFLSVEP-TPDLTPQFMQLLL-PELARESAKTPAP----RLLTPQQALEKFNGDKTAAA 512 ++ P TP+ PQ + + P+L R P + +AL++ NG+K AA Sbjct: 382 SILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEALDRHNGNKPEAA 441 Query: 513 NYLGISRTTFWRRL 526 LGIS T + +L Sbjct: 442 EELGISLKTLYNKL 455 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 454 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 149/403 (36%), Positives = 212/403 (52%), Gaps = 28/403 (6%) Query: 128 LRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS 187 L L+QR+ +T + +K N +V + D + G + + V Sbjct: 86 LVLEQRARVTID------QIVKRNNKHILVTGNPVFD---KRGGIFRVVTNVRDVTDLNR 136 Query: 188 DALDMTRMSLRHNTHDATRNALRTRYVLG-DMLGQSPQMEQVRQTILLYARSSAAVLIEG 246 +T+ + N LR ++ D++ +S + V + A + VLI G Sbjct: 137 LQNQLTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVVELATKVADVDSTVLITG 196 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 E+GTGKEL A+ IHR + PF+ +NCGAI E+LLE+ELFGY+ GAFTG+ Sbjct: 197 ESGTGKELFAKLIHRHGRGD--------NRPFIKINCGAIPETLLESELFGYDGGAFTGA 248 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 +R G+ GLFE+A GGTLFLDEIGEMP LQ +LLRV++EK V RVGG + V+VR+I+A Sbjct: 249 KREGKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAA 308 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 T+ +L +QQG FR DL+YRL ++ L +PPLRER DI L + FL Sbjct: 309 TNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFG----- 363 Query: 427 ALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARE 485 + L L Y WPGN+R+L N++ERL + E T D+ PQ + +P L + Sbjct: 364 FNKVILPDVIDRLTEYSWPGNVRQLENIIERLVVTTPGNEITADMLPQQVNARIP-LPKT 422 Query: 486 SAKTPAPRLLTPQQALEKF---NGDKTAAANYLGISRTTFWRR 525 K T + L + G+ A+ LGI RTT R+ Sbjct: 423 GTKLKEAVAATEKYLLTETFRQYGNWNKVADVLGIDRTTACRK 465 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 454 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 131/341 (38%), Positives = 203/341 (59%), Gaps = 24/341 (7%) Query: 200 NTHDATRNALRT----RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + DA +N + R L +++G+S + ++ L+ ++S++ VLI GE+GTGKEL Sbjct: 258 DKRDAIKNYNKMNKDYRIKLENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELF 317 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH + +PF+AVNC AI ++LLE+ELFGYEEGAFTG+++GG+ G+F Sbjct: 318 ARAIHNH--------SNRVDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGGKLGMF 369 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+AH G++FLDEIG+M L LQ++LLRVL+EKE+ ++G V +DVR+I+AT+ +LE+ + Sbjct: 370 EVAHKGSIFLDEIGDMSLHLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKDLEKMV 429 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 Q G FR DL+YRL+++ ++LP LRER DI + + +K S + Sbjct: 430 QNGTFREDLYYRLNVIPIKLPSLRERKEDIPLIIKHMVK----EYSKKLDKNVIDIDSRV 485 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPELARESAKTPAP-- 492 ++ Y WPGNIREL+N++E S T ++ PQ ++ E + P Sbjct: 486 VDAMMEYKWPGNIRELQNIIEYSVNMSSSSIITMNVIPQKIKNTSVEELEVKSDRIIPLD 545 Query: 493 --RLLTPQQALEKFNGDKTA---AANYLGISRTTFWRRLKS 528 + +AL K+ K A LGISR T +R+++ Sbjct: 546 ELEKIEIIKALNKYKDYKKDKELTAKALGISRATLYRKIEK 586 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 454 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 140/409 (34%), Positives = 205/409 (50%), Gaps = 21/409 (5%) Query: 126 FNLRLDQRSYITEE--DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 F++ L T + + + + V+ A + A EA G + + A + Sbjct: 73 FDVVLTDLRMPTVDGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFK 132 Query: 184 QAFSDALDMTRMSLRHNTHDATR--NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 ++ + R + R RY L ++G+SP M +V +L A + A Sbjct: 133 ESEVLLRVAKALEKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDAT 192 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VL+ GE+GTGKEL A+A+H + PFV VNC AI ++LLE+ELFG+ G Sbjct: 193 VLVTGESGTGKELVARALH--------VTSRRSDKPFVPVNCAAITDTLLESELFGHARG 244 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ R R G+FE A+GGTLF+DEIGE Q +LLR L+E E+ RVG PV V+V Sbjct: 245 AFTGATRA-RRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNV 303 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 R+I+AT+ +L + + RFR DLFYRL+++ L++PPLRER D+ LA FL+ + Sbjct: 304 RIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTG 363 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE 481 + R + L+ +DWPGN+REL N++E+ A + Q P Sbjct: 364 SE-----RVLTPEAVASLVAHDWPGNVRELENIIEQAAALCTGREIRAADVQIEARAAPA 418 Query: 482 LARE---SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + AL + D A LGIS TT WR++K Sbjct: 419 GGAGVTLADAVEDTERRAITAALARCGNDLGRVARDLGISGTTLWRKMK 467 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 150/458 (32%), Positives = 224/458 (48%), Gaps = 30/458 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + + L + + + +E + T + + + Sbjct: 11 VLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQL 70 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV-RQAFS-DALDMTRMSLRH 199 ++ E + V+ A + A EA G + + R+A M Sbjct: 71 LREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQGLS 130 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R L R ++G SP ME+V + I A + A VLI GE+GTGKEL A+AI Sbjct: 131 RENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAI 190 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H R +++ PFVA+NC AI LLE+ELFG+ +GAFTG+ + + G F A Sbjct: 191 HN--------RSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQD-KEGKFRQAE 241 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDE+GE+P+ LQ++LLR L+EKEV VGG + +DVRV++AT+ +LEE + +GR Sbjct: 242 AGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGR 301 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRLS++ + LPPLRER DI L F +A A V+ Sbjct: 302 FREDLFYRLSVIPVHLPPLRERKEDIPLLVRHF--------AAKHGGASVTFSPEILAVM 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP--------ELARESAKTP 490 Y WPGN+REL N +ER+ + + + PD P+ ++ L E Sbjct: 354 AAYGWPGNVRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLE 413 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +ALE+ N ++++AA +L I R T R++ Sbjct: 414 QLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRMEK 451 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 136/433 (31%), Positives = 208/433 (48%), Gaps = 30/433 (6%) Query: 108 GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 167 V Q+ + L + + + + E A+ ++ A + A Sbjct: 56 AVSDGQQAVACLKEQNYDLIISDIKMPRLDGFGLLDHVKERFASTAMIMITAFSTAEQAV 115 Query: 168 EAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 +A G + Y + + + + L R+ +++G+S M Sbjct: 116 DAMKKGAYDYITKPFKNEEIRLVVENALERMDLRRENLQLKKELGQRFSFANIIGKSKVM 175 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 + V I + S VLI GE+GTGKEL A+AIH + PFVA+ CGA Sbjct: 176 QGVYDLIEKVSASKVNVLITGESGTGKELVARAIHY--------NSDRHDRPFVAIYCGA 227 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 I E+LLE+ELFG+E+GAFTG+ + + GLFE+A GGTLFLDEI E+P +Q +LLRV++E Sbjct: 228 IPENLLESELFGHEKGAFTGAVQQ-KQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQE 286 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 E +VGG + + VDVR+++AT+ +L + + + +FR DL+YRL+++++ LPPLR+R DI Sbjct: 287 HEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDI 346 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS-V 464 L FL+ S L Y WPGNIREL N +ER + Sbjct: 347 PLLVSHFLQKLTPGFSTTIP-------DGVMRRFLDYHWPGNIRELENTVERCVVLGGKG 399 Query: 465 EPTPDLTPQFMQLLLPELARESAKTPAPRL-----------LTPQQALEKFNGDKTAAAN 513 E T D P M + ++ + P L +AL++ G + AA Sbjct: 400 EITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVRKRAAE 459 Query: 514 YLGISRTTFWRRL 526 L I+ + RL Sbjct: 460 LLHITFRSIRYRL 472 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 148/427 (34%), Positives = 220/427 (51%), Gaps = 22/427 (5%) Query: 110 VTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEA 169 E + + F L + + E ++ T ++ A + A EA Sbjct: 34 ANGAEALARIGEFSPAVVLTDVRMPQMDGLTLLKTAREQGSDATFVMMTAFASVETAVEA 93 Query: 170 GMTGI--FIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTR-YVLGDMLGQSPQME 226 +G F+ Q + +A R+ +R+R D++G+SPQ++ Sbjct: 94 MKSGADNFLLKPLDADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQ 153 Query: 227 QVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 286 + I A + A VLI GE+GTGKEL AQA+H+E +K PF+ V+C A+ Sbjct: 154 GIYDVIRRAAGTRATVLILGESGTGKELIAQALHQE--------SPRKDKPFIRVHCAAL 205 Query: 287 AESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK 346 +E+LLE+ELFG+E+G+FTG+ + G FE+A GGTLFLDEIGE+ +Q +LLRVL+++ Sbjct: 206 SENLLESELFGHEKGSFTGAL-ARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQR 264 Query: 347 EVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADIL 406 E RVGG Q + VDVR+++ATH +L +++ GRFR DL+YRL+++ + LPPLR+R +D+ Sbjct: 265 EFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVP 324 Query: 407 PLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP 466 L FL+ + LQA LL +DWPGNIREL N +ER + + Sbjct: 325 ALVNHFLEKYSDSYGKQVRGLAPGTLQA----LLSHDWPGNIRELENAIERAVVLAQGQE 380 Query: 467 TP-DLTPQFMQLLLPELARESAKTPAPRLLTPQ-----QALEKFNGDKTAAANYLGISRT 520 D P ++ P A P L + + LE G + AA LGIS Sbjct: 381 LSTDDLPPVLRGPRPHGTSTGALIPGATLAAIEREAILRTLEMVQGSTSRAAEVLGISVR 440 Query: 521 TFWRRLK 527 RLK Sbjct: 441 KIQYRLK 447 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 144/378 (38%), Positives = 208/378 (55%), Gaps = 20/378 (5%) Query: 156 VVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVL 215 VV ++ + G G ++ + + + L + RT Y L Sbjct: 94 VVARFPLSKDGKVIGAAGKLLFMDPGKMKELYERITHLERRLEKYEDELA-QIYRTNYSL 152 Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 +LG SP + Q ++ A + + VLI GE+GTGKEL A AIH + S Sbjct: 153 DSILGDSPDIIQAKRLAEQAAGADSPVLIMGESGTGKELFAHAIH--------GLSQRGS 204 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 V VNC AI LLEAELFGYEEGAFTG+R+ G+AG FE+AHGGT+FLDEIG+MPLP+ Sbjct: 205 GALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGKAGKFELAHGGTIFLDEIGDMPLPM 264 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q ++LRVL+E+EV RVG ++P VD R+I AT+ +L + M+QG FR+DL+YR++++ L+L Sbjct: 265 QIKILRVLQEREVERVGSNRPKKVDFRLICATNRDLPKLMRQGLFRQDLYYRINVMTLKL 324 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 PPLR+ DI PL + F ++ + L + +L Y WPGN+RELRN+ Sbjct: 325 PPLRDCRDDIFPLFQHFSRILGRE------KTPPKILPGVKEILEKYSWPGNVRELRNVT 378 Query: 456 ERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKF---NGDKTA 510 ER + DL Q +LP++ E A A ++ +E+ + Sbjct: 379 ERALIVCRDNTVSPADLPDLSQQEVLPQVIEEKASLKALMDQAEKKIIEQALVQASSRAE 438 Query: 511 AANYLGISRTTFWRRLKS 528 AA LGI RT ++++K Sbjct: 439 AARNLGIHRTGLYQKMKK 456 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 136/441 (30%), Positives = 209/441 (47%), Gaps = 33/441 (7%) Query: 108 GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 167 G E + + + L + + + +A I E ++ A + A Sbjct: 31 GATDGAEAVELVRSRPFDAVLLDVRMAGMGGMEALSLIKEYNPAVPVLIMTAYSSVETAV 90 Query: 168 EAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 A +G + Y + ++ R L V +++G+SP M Sbjct: 91 SALKSGAYDYLTKPLDLDVMRLTVERALDHLRLARENENLRQKLGPGVVGPEIIGKSPAM 150 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 ++ I + A + A VL+ GE+GTGKEL A+A+H A + P VAVNC A Sbjct: 151 RELFSMIAMVAPTEATVLVTGESGTGKELVAKALH--------AGSPRAGGPMVAVNCAA 202 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 + E+LLE+ELFG+E+GAFTG+ R R G F A G++FLDEIGE+ +Q +LLRV++E Sbjct: 203 LNETLLESELFGHEKGAFTGAERR-REGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQE 261 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 +E+ RVGG +PV VDVR+++AT+ +L+++++ GRFR DL+YRL+++ + +PPLRER DI Sbjct: 262 REIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDI 321 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE 465 LA+ FL ++ A+ LL WPGN+REL N +ER + E Sbjct: 322 PLLAQHFLTRFAEKNRKR----IKGFTPAAMDHLLRCPWPGNVRELENAVERAVILSVGE 377 Query: 466 PTPD------------------LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGD 507 + L G+ Sbjct: 378 YVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGGN 437 Query: 508 KTAAANYLGISRTTFWRRLKS 528 K+ AA LGI+R T ++LK Sbjct: 438 KSEAARVLGITRATLHKKLKK 458 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 156/530 (29%), Positives = 247/530 (46%), Gaps = 60/530 (11%) Query: 37 ANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQA 96 ++ +L KKL ++ + I G + S+ + P I + + + Sbjct: 117 FDLEIPKLDSFHEFENTIKKLIDDGIEIFI-GGKTTKEITSKYNKPCIETEVEKSSIHAS 175 Query: 97 LAKAG-------------KLTSSIGVVTYQETIPALVAFQKTF-----------NLRLDQ 132 + +A +T I T+ I F + Sbjct: 176 INEAIHLYNIGIEKRINNSITEEILECTHSGIIAIDKNHSPLFINNQAKRLLFNQVDKFI 235 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 + Y+T +D + + + ++ ++ + + I D ++ Sbjct: 236 KDYLTSDDILDSL-KNGHSLCNNIISFKGLSLTFDCFPI--IIDKLHFGCVATIQDIENI 292 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 +++ + D+LG S + +A+S + ++I GE+GTGK Sbjct: 293 QSTEKEIRESLISKSHC-AKSTFNDILGSSDALMHSVNMAKKFAKSDSTIIITGESGTGK 351 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 E+ AQ+IH + + PFVA+NC AI E++LE+ELFGY +GAFTG+R G+A Sbjct: 352 EIFAQSIHNY--------SNRFNGPFVAINCAAIPENILESELFGYVKGAFTGARNEGKA 403 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G+FE+AH GT+FLDEIGE+ +Q +LLRVL+E+EVTR+G + VP++VRVI+AT+ NL Sbjct: 404 GVFELAHNGTIFLDEIGEISKDVQVKLLRVLQEREVTRIGDTKVVPINVRVITATNKNLV 463 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E + FR DLFYRL +L+L LPPLRER DI L S + + + P S Sbjct: 464 EQIDNNNFREDLFYRLCVLKLDLPPLRERKEDIEQLTYSII----SHYNKPVS-----IS 514 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA- 491 ++ +L YD+PGNIR+L+N++ERL + + + + P ++ PA Sbjct: 515 DSALKLLSRYDFPGNIRQLKNIVERLVVMCDDNFVDEHLVSDILISEPHFRKDINLIPAI 574 Query: 492 -------------PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + LEK NG K+ AN LGIS TT WR+LK Sbjct: 575 NYSPVLSDNKIVDYEKKLILETLEKNNGVKSITANQLGISTTTLWRKLKK 624 Score = 66.3 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 2/188 (1%) Query: 24 ELFRDISLEFDHLANITP-IQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVP 82 +LF D E +I + + K + L N II G N L+ +S+P Sbjct: 12 KLFSDTVYEVLEELHIKIPLYIATGKETIELADNLINLGTKVIITRGQNVDLLRKHVSIP 71 Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 ++ + D+ + KA K +S IG + + + F++ N L+ + + Sbjct: 72 IVDVGYKYEDIFYSYKKALKYSSKIGFIGLESSYKTAKRFKEISNFDLEIPKLDSFHEFE 131 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSDALDMTRMSLRHNT 201 I +L +G E +G ++ + I ++ + ++A+ + + + Sbjct: 132 NTIKKLIDDGIEIFIGGKTTKEITSKYNKPCIETEVEKSSIHASINEAIHLYNIGIEKRI 191 Query: 202 HDATRNAL 209 +++ + Sbjct: 192 NNSITEEI 199 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 144/428 (33%), Positives = 225/428 (52%), Gaps = 50/428 (11%) Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGM-------TGIFIYSAATVRQAFSD--- 188 +D ++N + + G G +++ A+E FI A+ VR + Sbjct: 138 DDEGKRLNAVNSKGDVNNQLLGKVSEAAKECMKAQKPVLGKSTFISGASAVRIPITKEIG 197 Query: 189 --ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEG 246 + + + +Y D++G+S QM + ++ A S ++VLI G Sbjct: 198 FGFNNEDTALKNQKLLEEVKKYQTAKYNFTDIIGESQQMRKAKELGEAAASSDSSVLICG 257 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 ETGTGKEL AQ+IH + S PF+A+NC A+ SL+E+ LFGY EGAFTG+ Sbjct: 258 ETGTGKELFAQSIHNA--------SYRCSKPFIAINCAALPPSLIESNLFGYVEGAFTGA 309 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 ++GG G+FE A+ GTLFLDEI EM L LQ++LLRVL+EKEVTR+GG + +P+++R+I+A Sbjct: 310 KKGGATGVFEKANNGTLFLDEISEMDLDLQSKLLRVLQEKEVTRIGGRKVIPLNLRIIAA 369 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 T+ NLE+ +Q+G+FRRDLF+RL+++ ++LPPLR+ DI L ++ +++ F Sbjct: 370 TNRNLEDMIQKGQFRRDLFFRLNVIEVKLPPLRDMKEDIPLLVN----ETIIKMNSIFGK 425 Query: 427 ALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS----------------------- 463 A++ + + +L++YDWPGN+REL N +ER + Sbjct: 426 AIKGVDKEALEMLINYDWPGNVRELYNCIERAFNLIGDDNYIRKKHLNFKFNNGNGITAQ 485 Query: 464 --VEPTPDLTPQFMQLLLPELARESAKTPAP-RLLTPQQALEKFNGDKTAAANYLGISRT 520 +E D + L R A + L++ G + AA L IS Sbjct: 486 NYMEEIEDTEGNPINLDNDTGQRSLDDIVANYEKQVIEAVLKEVKGIRAKAAKRLNISPA 545 Query: 521 TFWRRLKS 528 T WR++K Sbjct: 546 TLWRKMKK 553 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 131/344 (38%), Positives = 197/344 (57%), Gaps = 23/344 (6%) Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + L+ + A R Y D+LG S ++Q Q+ ++S +++ GE+GTGKE+ Sbjct: 220 ILLKSKKTEKPEQAGRRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIMLRGESGTGKEM 279 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 AQAIH E +K+ PFVA+NC AI E+LLE+ELFGYE+GAFTG+ + + G Sbjct: 280 FAQAIHHE--------SERKNQPFVALNCAAIPENLLESELFGYEKGAFTGAEKE-KPGR 330 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A+ GTLFLDEIG+M L LQ ++LRVL+EK + R+G ++ +DVR+I+ATH NLEE Sbjct: 331 FELANHGTLFLDEIGDMSLYLQAKILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEEL 390 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +++G FR DL+YR+S++ + +PPLR R D+ L E F++ L+ + Sbjct: 391 IRKGEFREDLYYRISVIPIYIPPLRARKEDLPILIEHFIQKFSKDLNRD----SKNLAAE 446 Query: 435 SETVLLHYDWPGNIRELRNMMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKT 489 + L+ YDWPGNIREL+N++ +++E P + + P + + Sbjct: 447 TLDRLMQYDWPGNIRELQNVVRHFVELQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNH 506 Query: 490 PAPRLLTPQ--QALEKFNGD---KTAAANYLGISRTTFWRRLKS 528 RL + + LE+ K A LGIS T +R LK Sbjct: 507 YQTRLEKRKVLELLERNGWSTEGKKKTAADLGISLATLYRYLKK 550 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 155/451 (34%), Positives = 230/451 (50%), Gaps = 33/451 (7%) Query: 86 IKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQI 145 I S +D + A+ A + + + + + R I + + Sbjct: 199 IVNSSHDGIIAIDDAER------ITLFNPVAEKVFGIPAAAAVGAKIRDKIPNTNLPRIL 252 Query: 146 NELKAN-GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDA 204 + + G VG +I + G + + A F D ++ R+ R Sbjct: 253 RQGGSEDGELQYVGEKVIVTQRFAIKVNGRVVGAVAN----FRDVTELQRLE-RLVRQKL 307 Query: 205 TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYF 264 L R L D++G+S ++ + + +A A VLI GETGTGKE+ AQ IH Sbjct: 308 HAKGLVARIRLADIIGESAALKGLIERARKFAAVDATVLIVGETGTGKEMLAQGIHNA-- 365 Query: 265 ARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 + + PFVAVNC A+ E+LLE+ELFGY EGAFTG+++GG+ GLFE+AHGGT+F Sbjct: 366 ------SHRANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGGKPGLFELAHGGTIF 419 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDEI EMPLPLQ+RLLRVL+E+EV R+GG + +PVDVR+I+A++ NL +++G FR DL Sbjct: 420 LDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNLVEKGLFRDDL 479 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDW 444 +YRL +L L PPLRER DI L +FL+ + + + +L Y+W Sbjct: 480 YYRLHLLTLTAPPLRERKEDIPLLVRAFLRKHS-----HLNPLVSDIDSLAVQLLAEYEW 534 Query: 445 PGNIRELRNMMERLALF--------LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLT 496 PGN+REL N ++RL + +V + L + + Sbjct: 535 PGNVRELENAIQRLIILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQAAPSLADLEAQY 594 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + N +K+ AA LGI R+T WR+L+ Sbjct: 595 IAAVLAEENNNKSRAAKRLGIDRSTLWRKLR 625 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 6/216 (2%) Query: 11 KPVIWTVS-VTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAG 69 KP I V+ L + D A++T + + V R+ +A + II+ G Sbjct: 2 KPRIAIVAPYPALKAEAEAVVA--DLGAHVTVYEGDLDDGVQAARQAVA-GGVEVIISRG 58 Query: 70 SNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLR 129 + L +PV+ IK + +D+L+ LA+ + IG++ + + + + Sbjct: 59 GTARLIARTLDIPVVEIKVTPFDILRCLAQLREYKGKIGIIGFSNVVYGCESIGAVLGME 118 Query: 130 LDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSD 188 L Q + +DA G+I G E VVG + A G+ G+ I S + QA D Sbjct: 119 LKQIIIDSRDDAPGKIAAAAQAGIELVVGDAISIKQATRLGLKGVLITSGKEAIVQAIHD 178 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQ 224 A ++ + + + ++ Sbjct: 179 AENIAEVRISERERAELFRIIVNSSH-DGIIAIDDA 213 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 149/459 (32%), Positives = 213/459 (46%), Gaps = 49/459 (10%) Query: 94 LQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ-RSYITEEDARGQINELKANG 152 L+ L + +L IG++ L + + Q + + + G Sbjct: 190 LRILRRNSELAMHIGLL-----DAVLESTTSGLMVIDSQGVIWRVNRKGGQILKKTDLAG 244 Query: 153 TEAVVGAGLITDLAE---------------EAGMTGIFI-YSAATVRQAFSDALDMTRMS 196 E V GL D+ + + G I I +SA V M + Sbjct: 245 QEVSVLQGLDLDIEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQS---MLGVV 301 Query: 197 LRHNTHDATRN------ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 L D+ R + + M+G S + ++ A S + VL+ GETGT Sbjct: 302 LEFEPIDSVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGT 361 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL AQAIH ++S PFV +NCGAI LLE+ELFGY +GAFTG+++GG Sbjct: 362 GKELFAQAIHNA--------SRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGG 413 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 R G FE+AH GT+ LDEIG+MP +Q +LLRVL+ EV R+G +P VD R+I+ TH + Sbjct: 414 RPGKFELAHRGTILLDEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVD 473 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRER-VADILPLAESFLKVSLAALSAPFSAALR 429 L + + GRFR DL+YRL++L + +P LRER DIL L E FL + Sbjct: 474 LGKAVAAGRFREDLYYRLNVLPIVIPALRERGRDDILALTEFFLSRNR--------VTPP 525 Query: 430 QGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKT 489 Q + L ++ WPGN+REL N ++R + + T Sbjct: 526 QLTVGAVKALENHPWPGNVRELENTIQRALHLCEENEIDAACLGVPETAAAASSSTPRGT 585 Query: 490 PAP-RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L +Q LE G+ A LGISR T +R++K Sbjct: 586 LEEIERLAIEQTLEDTKGNMAETAKTLGISRATLYRKVK 624 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 139/409 (33%), Positives = 216/409 (52%), Gaps = 34/409 (8%) Query: 140 DARGQINELKANGTEAVV---GAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTR 194 D +++LK G E V A T++A +A G Y + + + Sbjct: 59 DGIEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIK 118 Query: 195 MSLRHNTHDATRNAL-RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 M + R L + + +GQS M+ V +TI S VLI+GE+GTGKE Sbjct: 119 MQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKE 178 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 + A+ IH + + S PF+ +NC I E L+E+ELFG+E+G+FTG+ +AG Sbjct: 179 VVARTIH--------SNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAV-SQKAG 229 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FEIAH G +FLDEIGE+PL Q +LLRVL+EKE RVGG + + VDVR+++AT+ NLE+ Sbjct: 230 KFEIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLED 289 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 +Q+G+FR DL+YRL+++ ++LPPLRER DI L F+K + S ++ + Sbjct: 290 MVQEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMI 349 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLS-----VEPTPDLTPQFMQLLLPELARESAK 488 +E Y WPGN+RE++N+ E+ + ++ P + L A+ S Sbjct: 350 FAEK----YAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLD 405 Query: 489 TPAPRLL----------TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 T R L ++L + N ++ A LG++R + + ++K Sbjct: 406 TNDKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMK 454 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 132/387 (34%), Positives = 202/387 (52%), Gaps = 24/387 (6%) Query: 149 KANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNA 208 K NG + + + G+ I ++ + L+ + L + ++ R Sbjct: 292 KKNGINVISTIDPLFIDGQFKGV--ISTSRPVSLIKELMSKLNKSEQELDYYKNEFLRQ- 348 Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L +++G + ++ + + +++ VLI GE+GTGKEL A+AIH Sbjct: 349 LSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHN------- 401 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 +K+ PFV VNC +I E+LLE+ELFGYE+GAFTG+ + + G F IA GT+FLDEI Sbjct: 402 -NSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQS-KPGKFAIADTGTIFLDEI 459 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 G+MPL +Q +LLRVL+E+E+ VGG P +DVRVI+AT+ NLEE ++ G FR DL+YRL Sbjct: 460 GDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRL 519 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 ++L + LPPLRER DI LAE F+ L+ + Q + +L+ Y WPGNI Sbjct: 520 NVLGINLPPLRERKEDIPELAEHFI----TKLNKKLHKTILGIKQDALNLLIEYSWPGNI 575 Query: 449 RELRNMMERLALFLSVEPTP-DLTPQFMQLLLPEL------ARESAKTPAPRLLTPQQAL 501 REL N+MER + P +++ + + + A+ Sbjct: 576 RELENIMERAINLCDGDYIDSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAM 635 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLKS 528 +K+ A LG++ T + K Sbjct: 636 KKYK-SFNKAGKALGLTHRTVSLKCKK 661 >UniRef50_C6PY15 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY15_9CLOT Length = 554 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 128/387 (33%), Positives = 211/387 (54%), Gaps = 23/387 (5%) Query: 150 ANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNAL 209 NG ++G ++ + + A L+ + + L Sbjct: 167 RNGIGEIIG--VLDLTGYSECVNSHTLGMVVASANAIEKILEFKNYNAIKKERKLAKRLL 224 Query: 210 RTR--YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 + Y ++G+S ++ + + S++ +LI GE+GTGKE+ AQAIH Sbjct: 225 NNQAIYTFDKIIGKSKKITNAVEYAKKISDSNSTILITGESGTGKEIFAQAIHNY----- 279 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 +K PF+A+NCGA+ +L+E ELFGYE+GAFTG+++GG AG FE+A GGT+FLDE Sbjct: 280 ---SQRKDMPFIAINCGALPSNLIELELFGYEDGAFTGAKKGGNAGKFEMAEGGTIFLDE 336 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IGEMPL +Q LLRV+EE + R+GG + + ++VR+I+AT+ +L+E++ +GRFR+DLFYR Sbjct: 337 IGEMPLDMQVSLLRVMEEGVINRIGGCKQILLNVRIIAATNKDLKEEVSKGRFRKDLFYR 396 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 L++L L +P LR+R D+ L E ++K + L+ + + S L Y+W GN Sbjct: 397 LNVLPLHVPSLRDRKEDVPLLVEYYMKKASKRLNKR----IVDIDENSMENLKQYEWTGN 452 Query: 448 IRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELA-RESAKTPAPRLLTPQQ-----AL 501 +REL N++E L + P + ++ + +++ + L ++ L Sbjct: 453 VRELENVIE-LTVNTEKLPEEFCYSKVYEINIENTVFKQNTQIGNMNLELLEKNHIINVL 511 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLKS 528 F G+ T AA +GI R T +R+++ Sbjct: 512 HNFKGNITLAAKVMGIGRNTLYRKIQK 538 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 131/381 (34%), Positives = 210/381 (55%), Gaps = 20/381 (5%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 +G + + G G ++ + + +D + + R Sbjct: 176 HGETKITINLPVRKDNRVIGAFGRILFQSPEQLEKLADRVRAMERKVERYE-TLLDEMRR 234 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 R+ ++L Q+P M+++ + A SSA VLI GE+GTGKEL AQA+H Sbjct: 235 HRFSFENILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFAQALHEA-------- 286 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++ PFVA+NCGAI +L+E+ELFGYEEGAF+G+ + G+ G FE+A GTLFLDEIGE Sbjct: 287 SHRRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLFLDEIGE 346 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 +P+ Q +LLRVLEE+++ R+GG P+ VD R++ AT+ +L G+FR DLFYR++ Sbjct: 347 LPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDLFYRINE 406 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 +++PPLR+R+ DI LAE FL + A+ + + + VL+ Y+WPGN+RE Sbjct: 407 FPIEIPPLRQRLDDIPLLAEHFLTKACQQEGL----AMPKFSEEAIKVLMSYEWPGNVRE 462 Query: 451 LRNMMERLA-----LFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN 505 LR+++ ++A + + + P + ++ + E + AL+ N Sbjct: 463 LRSLIRQMAWKFQGMTVELHNLPQAFHKERKVTMSGTLEEQLARAERN--AIETALQTSN 520 Query: 506 GDKTAAANYLGISRTTFWRRL 526 G++ AA LGI RT ++++ Sbjct: 521 GNRALAARMLGIHRTALYKKM 541 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 133/358 (37%), Positives = 194/358 (54%), Gaps = 16/358 (4%) Query: 174 IFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTIL 233 I + A D++ + + N L + M+G S QM +V I Sbjct: 121 ILHAEDGSTVGAVETMTDLSELDRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIE 180 Query: 234 LYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA 293 A+S A V I GE+GTGKEL A+AIH + P+V NC A+ E+LLE+ Sbjct: 181 KAAQSDAPVFIYGESGTGKELVARAIHD--------LGPRSDQPYVQFNCAALNEALLES 232 Query: 294 ELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGG 353 ELFG+ +GAFTG+ R R G FE AHGG +FLDEIG++P+P+Q +LLRVLE K RVG Sbjct: 233 ELFGHVKGAFTGAFR-HRQGRFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETKTFERVGD 291 Query: 354 HQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL 413 ++ + VDVR+I+AT+ L E + QG+FR DLFYR++++ + LP LRER DI LA+ F+ Sbjct: 292 NRQLSVDVRIITATNKVLPELISQGQFREDLFYRINVIPVHLPSLRERKEDIPLLADYFI 351 Query: 414 KVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTP 472 + L ++ + + + Y WPGN+REL++ +E + P+ P Sbjct: 352 Q----RLRMKSDKDIKGLSPQTLRLFMDYSWPGNVRELKSSLEYAFVLADHGHIEPEHLP 407 Query: 473 QFMQLLLPELARESAKTPAPRLLTPQ--QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + + P +A P Q QAL + G+K+ AA LGI+R T R++ Sbjct: 408 HNVVVTAPPVAEPRYGNPGHDSQRQQLVQALHQAGGNKSEAARILGINRVTVLNRMRK 465 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 138/423 (32%), Positives = 217/423 (51%), Gaps = 24/423 (5%) Query: 117 PALVAFQKTFNLRLDQRSYITEE-DARGQINELKANGT---EAVVGAGLITDLAEEAGMT 172 A+ K + ++ E D ++++K + V+ + A EA Sbjct: 36 DAIERISKDPEYAIVLTDFVMPEMDGIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKH 95 Query: 173 GIFIYSAATVR--QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 G Y + + + +M D R+ L +Y G+++G+SP+++++ Sbjct: 96 GASDYITKPFKRDELVLVIEKILQMQRLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYD 155 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 I + + A +LI+GETGTGKEL A+AIH + +H FV V+C ++ E+L Sbjct: 156 IISHVSGTEANILIQGETGTGKELVAKAIHY--------NSARNNHRFVKVDCSSLTETL 207 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 LE+ELFG+E+GAFTG+ + R G F A GT+FLDEIG + L +Q +LLRVL++ E Sbjct: 208 LESELFGHEKGAFTGATKD-RVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEA 266 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 VG + + VDVR+I+AT+ +LE +++G FR DLFYRL+++R+ LPPLRER DI LA Sbjct: 267 VGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAA 326 Query: 411 SFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL-SVEPTPD 469 FL + + + + + +L Y WPGNIREL N++ER + TP+ Sbjct: 327 HFLAIH----NKKNRKTVEGFSRDTLNILTSYAWPGNIRELENVIERAVILCKKNRITPE 382 Query: 470 LTPQFMQLLLPELARESAKTPAPRLLTPQQ----ALEKFNGDKTAAANYLGISRTTFWRR 525 P + + + T +Q LE + DK A L ISR + + + Sbjct: 383 DVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEANDADKEKTAKILKISRASLYNK 442 Query: 526 LKS 528 L Sbjct: 443 LNK 445 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 131/324 (40%), Positives = 189/324 (58%), Gaps = 26/324 (8%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 G ++G S M++V + I A++ A VLI GE+GTGKEL A+AIH + Sbjct: 426 FGQLVGNSAAMQEVYRLIEKVAKTDATVLIRGESGTGKELVARAIHYH--------SRRS 477 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFV++NC A+ E+LLE+ELFG+ GAFTG+ + GLFE A+ GT+FLDEIG++ L Sbjct: 478 EAPFVSINCAALPETLLESELFGHARGAFTGAV-TAKKGLFEEANEGTIFLDEIGDISLG 536 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ++LLRVL+E E RVG +P V+VRV++AT+ +LE+ ++ G FR +L YRL+++ + Sbjct: 537 LQSKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIW 596 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LPPLRER DI LA FL+ S L + + + A L+ DWPGN+REL N+ Sbjct: 597 LPPLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDA----LIRADWPGNVRELENV 652 Query: 455 MERLALFLSVEPTP--DLTPQFMQLLLPELA---------RESAKTPAPRLLTPQQALEK 503 +ER + + DL QF + +E+ RL+ QALE+ Sbjct: 653 IERAVILTESKRIELGDLPRQFRNMAAGASGWAFTRGMSFKEAVAAYESRLIL--QALEE 710 Query: 504 FNGDKTAAANYLGISRTTFWRRLK 527 G + AA LG+ R+T +K Sbjct: 711 SQGVQARAAEILGLKRSTLNEMIK 734 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 168/526 (31%), Positives = 256/526 (48%), Gaps = 49/526 (9%) Query: 38 NITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQAL 97 +I +T + + A I G + + S+ +P + I+ + +AL Sbjct: 122 DIKSYHSESTDGITRAIDQAVADGYTAFI-GGYSVNLICSQRRLPSVTIRTGNEAITRAL 180 Query: 98 AKAGKLTSSIGVVTYQETIPALV---AFQKTFNLRLDQ----------RSYITEEDARGQ 144 +A + + + + + + A + + Q + Y + Sbjct: 181 DEAVRTVDVVRMERERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTGPKKKLQG 240 Query: 145 IN-----ELKANGTEAVVGAGLITD--------LAEEAGMTGIFIYSAAT-VRQAFSDAL 190 ++ + V+ G A + + I S T + F D Sbjct: 241 LSLQSAFPFLSEPVSTVISTGTELPNQLIRWKNYTINATIHPVIINSRITGIVVTFQDVT 300 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 + ++ ++ T L Y D++ +SP+++ V + +A S+ +LIEGETGT Sbjct: 301 QIQQVEIQIRKK-MTDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSNILIEGETGT 359 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL AQ+IH + + PFVAVNC A+ E+LLE+ELFGY EGAFTG+ +GG Sbjct: 360 GKELFAQSIHNA--------STRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKGG 411 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 + GLFE+AH GTLFLDEI E+PL +Q +LLRVL+E EV RVGG + + VDVR+I+AT+ + Sbjct: 412 KTGLFELAHKGTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNHS 471 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 L +QGRFR+DL YRL++L+L LPPLR R D L +L + L + Sbjct: 472 LSRITEQGRFRQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGR----IIPH 527 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFMQLLLPELARESAK 488 A+ +L Y +PGNIRELRN+ ERL + E T D + + + +S Sbjct: 528 VATAAIQMLSDYHFPGNIRELRNVTERLVVICMDKEEITADDMREALHPEELPVKFQSTD 587 Query: 489 TPAP------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 P P + LE+ N ++T A LGI+RTT WRR+K Sbjct: 588 MPIPPFYQDGEREFLIRILEESNYNQTLTAEKLGINRTTLWRRMKK 633 Score = 58.2 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 10/201 (4%) Query: 13 VIWTVSVTRLFELFRDISLEFDHLANITP-IQLGFEKAVTYIRKKLANERCDAIIAAGSN 71 +I+ + L E I A + I++ + N D IIA G Sbjct: 5 IIFIIPYPELEEKVNKIFQNHPLRARLRKRIEMRTADELETFS---FNAHSDVIIARGYT 61 Query: 72 GAYLKSRL-SVPVILIKPSGYDVLQALAKAGKLT--SSIGVVTYQETIPALVAFQKTFNL 128 L+ +P+I + + YD+++AL + L + + + N Sbjct: 62 ACGLRKMTPELPIIELPITAYDLIRALNECITLYSPKKVAFIGNYTALAEADELGNFVNC 121 Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 + + + I++ A+G A +G + + + + + I T +A + Sbjct: 122 DIKSYHSESTDGITRAIDQAVADGYTAFIGGYSVNLICSQRRLPSVTI---RTGNEAITR 178 Query: 189 ALDMTRMSLRHNTHDATRNAL 209 ALD ++ + R+A+ Sbjct: 179 ALDEAVRTVDVVRMERERSAM 199 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 126/409 (30%), Positives = 211/409 (51%), Gaps = 27/409 (6%) Query: 130 LDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDA 189 + E ++ + + G + + + D + G + + + + + Sbjct: 94 ICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMD---DEGNIKRVVVNVRDITEIVNLR 150 Query: 190 LDMTRMSLRHNTHDATRNALRTRY-VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 + + + A +R ++ +++ SP+ ++V A+ + VLI GE+ Sbjct: 151 DQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKVDSTVLITGES 210 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 G GKE+ A IH + P + +NCGAI E+LLE+ELFGYE GAFTG+R+ Sbjct: 211 GVGKEIVANVIH--------CLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGARK 262 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 G+ G+FE+A GTLFLDE+GE+ L LQ +LLRVL++ EV RVGG +P+PVDVR+++AT+ Sbjct: 263 QGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAATN 322 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 +L E +++ +FR DL+YRL+++ +++PPLRER DI LA FL+ Sbjct: 323 KDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYG-----FN 377 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP---------DLTPQFMQLLL 479 ++ L Y WPGNIREL N++ER+ + + +L+ ++ Sbjct: 378 KRFAPDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIKNLSSLQNDIMF 437 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 E+ +QAL+K+ G A L ++++T R++K Sbjct: 438 SEIMPLKKAVEHVEKHLIEQALKKY-GSTRKVARALKVNQSTIVRKIKK 485 >UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UVC1_RHOBA Length = 498 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 147/432 (34%), Positives = 228/432 (52%), Gaps = 21/432 (4%) Query: 102 KLTSSIGVVTYQETIPALVAFQKTFNLRLD-QRSYITEEDARGQINELKANGTEAVVGAG 160 ++ + V T +++ + L +D ++ + + E++ ++ Sbjct: 71 RMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMSGIEVIARAREIRPEIEAVIMTGN 130 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH--NTHDATRNALRTRYVLGDM 218 + A EA G F Y R A AL R A R+ L+ D+ Sbjct: 131 PSQETAIEALRHGTFDYLMKPCRLAEISALMGRVSERREWNRLVAALRHRLQRAEGDSDL 190 Query: 219 LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPF 278 +G++ M VR+ I A + + VLI GETG GKEL A+AI + PF Sbjct: 191 IGENQSMHAVRKLIAKVAPTESTVLIRGETGCGKELVARAI--------ADESLRSEQPF 242 Query: 279 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTR 338 VA+NCGA+ E+L+E+ELFG+ +GAFTG+ GR GLFE+A GGTLFLDE+GE+PL +Q + Sbjct: 243 VAINCGALPETLIESELFGHVKGAFTGAD-SGRMGLFEVASGGTLFLDEVGELPLAVQAK 301 Query: 339 LLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPL 398 LLRVLE ++ R+G +Q + VDVRV+ ATH +LE+ + +G FR DL +R++ L+LP L Sbjct: 302 LLRVLETGDIRRLGDNQSIKVDVRVVCATHRDLEKMVTEGTFREDLMFRINTFELRLPAL 361 Query: 399 RERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERL 458 R+R+ D+ LAE L+ A + + +A+ L + WPGN+REL N++E Sbjct: 362 RDRIDDLPALAEHLLRRHRAD-----GTSGQLFTEAAMAELQSHQWPGNVRELANVIEHA 416 Query: 459 ALFLSVEPTP-DLTPQF--MQLLLPELARESAKTPAP-RLLTPQQALEKFNGDKTAAANY 514 ++ P + PQ + L +LA + T L ++A+ + NG+K A A Sbjct: 417 SVLCDALPIDVEHLPQHFARRQLRADLADTAPMTMREIELRAIERAMTRHNGNKKAVAEE 476 Query: 515 LGISRTTFWRRL 526 LG+S T + +L Sbjct: 477 LGMSLKTLYNKL 488 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 136/423 (32%), Positives = 210/423 (49%), Gaps = 20/423 (4%) Query: 110 VTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEA 169 + QETI + + + + ++ ++ ++ + A +A Sbjct: 35 ASGQETIKNMQERDYDVAILDMNMPVMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQA 94 Query: 170 GMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDA--TRNALRTRYVLGDMLGQSPQMEQ 227 G + Y + D L + R + + + + M+G SP ++ Sbjct: 95 IKLGAYDYLTKPCQLKELDLLLQRALEKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKA 154 Query: 228 VRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 287 V + I A S VLI+GE+GTGKELAA+ IH+ + PFV VNC + Sbjct: 155 VFKMIDKTAPSDVTVLIQGESGTGKELAAKMIHQY--------SKRADKPFVIVNCATLQ 206 Query: 288 ESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKE 347 ESLLE+ELFG+ +GAFTG+ R GLFEIA GGTLFLDEIGE+ + Q +LLRV++ E Sbjct: 207 ESLLESELFGHVKGAFTGAAES-RVGLFEIAEGGTLFLDEIGELTVNTQAKLLRVIQSGE 265 Query: 348 VTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILP 407 + RVG ++ + VD R+I+ATH NL ++++GRFR DL++RL+++ L+LP LRER D+ Sbjct: 266 IRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRERKDDLTA 325 Query: 408 LAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT 467 L + FL+ + + YDWPGNIREL N +ER + Sbjct: 326 LIQHFLQKFCK------GERTMDMHPEALHAMTLYDWPGNIRELENTIERTVVLADGNII 379 Query: 468 P-DLTPQFMQLLLPELARESAKTPAPRLLT--PQQALEKFNGDKTAAANYLGISRTTFWR 524 + P ++ E ++ + + Q L++ N K AA LGIS T + Sbjct: 380 SIEELPDNIRGRTYEHYGKNGEIALSEVEKNHIIQVLKEKNWHKPLAAKTLGISLKTLYN 439 Query: 525 RLK 527 ++K Sbjct: 440 KMK 442 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 134/395 (33%), Positives = 200/395 (50%), Gaps = 27/395 (6%) Query: 144 QINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHD 203 Q + + + V + + G + VR + ++ Sbjct: 75 QYHRPRPDKHVVVNARPIFDNRGRLIGAVSVERDITQIVRLNDNLVSTSIELNELRQKMY 134 Query: 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREY 263 + + G+S + Q A++ A LI GE+GTGKE+ A+AIH Sbjct: 135 TSYEETP----FSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEICARAIHEA- 189 Query: 264 FARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTL 323 +K+ PF+ VNCG+I +L E+ELFGYE G FTG+ + G+AG E A GGTL Sbjct: 190 -------SARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTL 242 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDEIGE+PL +Q +LLRVL+EK + R+G ++VR I+AT+ ++E+ M++ FR D Sbjct: 243 FLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSD 302 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 L+YRL+++++ +PPLR R DI LA FLK P + + + L Y Sbjct: 303 LYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMP----EPELAPDALSFLQAYH 358 Query: 444 WPGNIRELRNMMERLALFLSVEPTPDLTP----------QFMQLLLPELARESAKTPAPR 493 WPGN+RELRN+MER+ + S +P D Q +PE + Sbjct: 359 WPGNVRELRNLMERMVIL-SEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENME 417 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++AL K G+K+AAA LGISR T +++LK Sbjct: 418 KQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKK 452 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 130/403 (32%), Positives = 215/403 (53%), Gaps = 21/403 (5%) Query: 132 QRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 191 T E + +++ G + + I G G ++ ++ + Sbjct: 78 HIVAKTGEKELFDVQKIQ--GYDMITSRIPIVKDGRVIGAAGTVLFKDVKELESLVKRMK 135 Query: 192 MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + ++ + R R +Y ++ Q+ QM +++ A S++ VLI+GE+GTG Sbjct: 136 VLESTVDEYRGEIKRLH-RAKYSFEHIVTQNRQMIYLKELARKAAESNSTVLIQGESGTG 194 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KE A AIHR ++ F+ +NC AI LLE+ELFGY+ GAFTG+++ G+ Sbjct: 195 KEFFAHAIHRA--------SLRRYGSFITINCAAIPNELLESELFGYDAGAFTGAKKQGK 246 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 G FE+ +GGT+ LDEIG MPL +Q ++LR+LE +E R+GG+ + +DVR+I+AT+ L Sbjct: 247 VGKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRIIAATNEPL 306 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 EE +++GRFR+DL+YRL+++ +++PPLRER+ DI LA+ L+ L +++ Sbjct: 307 EEAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIE----MKEL 362 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFM-----QLLLPELARE 485 + VL Y WPGN+RELRN +ER + + P+ P + + Sbjct: 363 TFETIEVLKKYQWPGNVRELRNTLERALNIVQGDMIYPEDLPGHLIESSSKSSYSHSLLL 422 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + Q AL NG+K+ AA LGI RT ++++++ Sbjct: 423 KDIMAKTEIEAIQSALRDSNGNKSVAAKQLGIHRTALYKKIQA 465 >UniRef50_B2I240 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domain n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I240_ACIBC Length = 627 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 151/336 (44%), Positives = 203/336 (60%), Gaps = 27/336 (8%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + TRY +L Q+P +Q+ + YA++ + +LI GE+GTGKE+ AQ+IH Sbjct: 305 RKVSSKNFNTRYTFDQILTQNPNFQQIIKLSKAYAKTDSTILITGESGTGKEVLAQSIHN 364 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + PFVA+NC + ESLLE+ELFGYEEGAFTG+++ GR GL E AH G Sbjct: 365 Y--------SSRYKAPFVAINCASFPESLLESELFGYEEGAFTGAKKNGRIGLIEAAHTG 416 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+MPL LQTR LRVL+E+++ R+G +D+RVI+ATH +LEE ++ G FR Sbjct: 417 TLFLDEIGDMPLHLQTRFLRVLQERQINRLGSVVSHHLDIRVIAATHADLEELVRNGSFR 476 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL+ILR+ P L+ER DIL LA SFL+ L+ + LH Sbjct: 477 ADLYYRLNILRVYTPSLKERKEDILYLANSFLEKYRKTLN--------DLPSILQKAFLH 528 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL------ 495 Y WPGNIREL N++ER+ + L ++ LTP+F++ LPEL + LL Sbjct: 529 YSWPGNIRELENIVERINVLLQLDHEI-LTPEFLKQQLPELFQSQNHHTTQPLLKEVKVN 587 Query: 496 ----TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +Q L + GD AA LGISRTT WRR+K Sbjct: 588 QELSLIEQTLAEVEGDLDLAAQKLGISRTTLWRRMK 623 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Query: 38 NITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQAL 97 I ++ V + + L C ++ G+ ++L+ +L++ + +I+ +DV+QA+ Sbjct: 37 EIDLVECHISD-VQDVAQSLVENGCQILLCTGATASFLQKKLNIDIQVIRTGTFDVIQAI 95 Query: 98 AKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVV 157 + + I +V T+ L + F L + Q +Y + DA+ I+ +K G +A++ Sbjct: 96 SNLKQY-KRIALVGNTSTV-DLENYSDIFALDIQQFNYDSYLDAKKTIHLIKNQGFDAII 153 Query: 158 GAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 G+ + +LA + G S +++ +AL R Sbjct: 154 GSPVAVELALNENLVGHLAISVPSLKDLLQNALRTLEKIRREQ 196 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 142/437 (32%), Positives = 225/437 (51%), Gaps = 37/437 (8%) Query: 111 TYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAG 170 + ++ + + + + +T D + E+ N V+ A + A EA Sbjct: 33 SGKKALSLIKDTPFDMVITDMKMPDLTGIDILRKCKEISPNTIVVVITAFGSIENAVEAM 92 Query: 171 MTGIFIY-----SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 G F Y S T+ A + + + + +R ++G+SP M Sbjct: 93 KLGAFNYLIKPFSPDTIEAIIEKAKEHLSLVQENQYLRQQVSTGDSRNHFQ-IIGESPIM 151 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 +Q+ + + A+S+A+V I GE+GTGKE+ AQAIH A + PF+ VNC A Sbjct: 152 KQILRDVTRVAQSNASVFINGESGTGKEVIAQAIH--------ANSARSQFPFIKVNCAA 203 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 I E+L+E+E FG+E+GAFTG+ R G FE+AH GTL LDEI E+PL +Q +LLR ++E Sbjct: 204 IPETLIESEFFGHEKGAFTGANFK-RLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQE 262 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 +E RVGG +P+ VDVR+IS ++ ++++ + R DL+YRL+++ + LPPLR+R DI Sbjct: 263 QEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDI 322 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF-LSV 464 LPLA FL+ + + + S L+ Y WPGN+REL N++ER + + Sbjct: 323 LPLAHYFLE----KMCMENHKQAKTFSKESIKKLVGYAWPGNVRELANIVERAVVMTTNS 378 Query: 465 EPTPDLTPQFMQLLLPELARESAKTPAPRLLT---------------PQQALEKFNGDKT 509 E TP+ +++ P L +A T + LT + L+ + ++T Sbjct: 379 EITPEHL--YIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKRLIIETLQAQHNNRT 436 Query: 510 AAANYLGISRTTFWRRL 526 A LGIS T +L Sbjct: 437 KTAEVLGISVRTLRNKL 453 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 133/431 (30%), Positives = 217/431 (50%), Gaps = 26/431 (6%) Query: 109 VVTYQETIPALVAFQK-TFNLRLDQRSYITEE--DARGQINELKANGTEAVVGAGLITDL 165 V + AL +K F++ L + + + L + ++ + Sbjct: 28 VTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFEILRKCKALYPDTEVIMITGYATVEN 87 Query: 166 AEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLG---DMLGQS 222 A A G F Y A + + + LR + +++ Q+ Sbjct: 88 AVTAMKQGAFYYIAKPFKLDI--IRKIILEASEKVKLKKEVKQLRQQLDFHEKVNIITQN 145 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 +M ++ + A + VLI GE+GTGKEL A+ IH +K PF+AVN Sbjct: 146 SKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIH--------LNSLRKKGPFLAVN 197 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 CGA +E LL ELFG+E+GAFTG+ + GL E+A G+LFLDEI EM L +Q +LLRV Sbjct: 198 CGAFSEELLSNELFGHEKGAFTGAN-ALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRV 256 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 ++E+E R+G +P+ VDVR I+AT+ +++E+++ G+FR DL+YRL+++ +++PPLRER Sbjct: 257 IQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERK 316 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 DI L F K + + + + +L++Y++PGN+REL N++ER + Sbjct: 317 DDIPLLVAYFSKKYSLLMKKEITG----VSEEAINLLVNYEYPGNVRELENIIERAVVLC 372 Query: 463 SVEPTP-DLTPQFMQLLLPELARESA----KTPAPRLLTPQQALEKFNGDKTAAANYLGI 517 + + PQ ++ L E+ + + L + +KT AA LGI Sbjct: 373 NSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGNNKTVAAQILGI 432 Query: 518 SRTTFWRRLKS 528 R + WR+LK+ Sbjct: 433 DRVSLWRKLKN 443 >UniRef50_A8RUM4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUM4_9CLOT Length = 625 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 164/541 (30%), Positives = 252/541 (46%), Gaps = 54/541 (9%) Query: 17 VSVTRLFELFRDISLEFDHL-ANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYL 75 + + + I+ D A I L + + K+ +E C I+ G N Sbjct: 103 IGIIAAGNMLDGITELSDLSEAPIRTFVLTPDWNNEMLVKRAVSEGCKVIL-GGVNTCRY 161 Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 + V ++I+ S AL+ + S +++ + Q ++ D Sbjct: 162 AAENHVSFMMIQTSQEAFWNALSDVKRTWS-----IFRKEQEKALRLQALLDISHDGILL 216 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAG-MTGIFIYSAATVRQAFSDALDMTR 194 I + +N KA + G L D G + + V + +M Sbjct: 217 IDPDFKLTAMNR-KAQSVLGIDGEHLPVDALSLGGELKDVLAGDEEYVNRLVQYGSNMLN 275 Query: 195 -------------------------MSLRHNTHDAT-RNALRTRYVLGDMLGQSPQMEQV 228 S+ H+ + RY D+ G+SP M Sbjct: 276 VSKNVLKIQSSICGYVVNVQAVKEIQSMEHDIRKRICKRGHIARYRFDDITGESPVMIST 335 Query: 229 RQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 288 +T Y+R+S+ +L+ G++GTGKE+ AQ+IH + ++ PFVAVNC AI E Sbjct: 336 VETARRYSRTSSNILLIGQSGTGKEMFAQSIHND--------SQRRRMPFVAVNCAAIPE 387 Query: 289 SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEV 348 LLE+ELFGY GAFTG+ R G+AGLFE+AH GTLFLDEIGE+ LPLQ +LLRVL+E+E+ Sbjct: 388 QLLESELFGYVPGAFTGAHRDGKAGLFELAHKGTLFLDEIGEISLPLQAKLLRVLQEREI 447 Query: 349 TRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPL 408 RVGG +PVD+R+++AT+ NLE+ + +FR DL YRL +LR+ +P L +R DI L Sbjct: 448 MRVGGDSVIPVDIRILAATNQNLEQLAAERQFREDLLYRLDVLRINIPSLNQRREDISLL 507 Query: 409 AESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV--EP 466 A+S++K + + + ++ L DWPGN+R+L N ERLA+ + Sbjct: 508 ADSYMKRAFPDI---------RITDEAKAYLEQMDWPGNVRQLFNFCERLAVLCNGFAVD 558 Query: 467 TPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + +Q +P + L + K A LGISR+T WR+L Sbjct: 559 ADLVAAVSLQGGIPLGTGSVLSDEEDEQRIITKTLASCHYHKGNTAKALGISRSTLWRKL 618 Query: 527 K 527 + Sbjct: 619 R 619 Score = 52.1 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 9/191 (4%) Query: 61 RCDAIIAAGSNGAYLKS-RLSVPVILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIP 117 D ++ G L S ++PV+ I D+L+ + + IG++ + Sbjct: 54 EADIVLTRGLLAEILASLSKNIPVVEITVPAADILRTIRNCVEHYGKQKIGIIAAGNMLD 113 Query: 118 ALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIY 177 + + + + + + G + ++G A E ++ + I Sbjct: 114 GITELSDLSEAPIRTFVLTPDWNNEMLVKRAVSEGCKVILGGVNTCRYAAENHVSFMMIQ 173 Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 ++ + T R A R +L P + + A+ Sbjct: 174 TSQEAFWNALSDVKRTWSIFRKEQEKALRLQALLDISHDGILLIDPDFK--LTAMNRKAQ 231 Query: 238 SSAAVL-IEGE 247 S VL I+GE Sbjct: 232 S---VLGIDGE 239 >UniRef50_C0Z9N5 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9N5_BREBN Length = 584 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 186/323 (57%), Gaps = 21/323 (6%) Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 L ++G SP ++QV++ + S++ VLI GETGTGK A+AIH + Sbjct: 270 SLAQIVGNSPAIKQVKEMAMKIGNSNSTVLITGETGTGKGHLAKAIHEA--------STR 321 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 PFVA+NC +I E+L E+ELFGYE+GAFTG+++GG+ G FE+A GGTLFLDEIG+MPL Sbjct: 322 AYSPFVAINCASIPENLFESELFGYEDGAFTGAKKGGKPGRFEMAEGGTLFLDEIGDMPL 381 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 LQ +LLRVL+EK V R+GG + P+ VR+I+AT+ NLEE +++ FR DL+YRL+++ + Sbjct: 382 SLQAKLLRVLQEKVVERIGGTRSFPIHVRIIAATNQNLEELVEKKAFRADLYYRLNVIPI 441 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 +P L ER DI LA SF++ F R+ + +L HY WPGN+REL N Sbjct: 442 HVPSLAERKEDIELLAVSFMEKYGEQAGRTFFGIAREAI----NLLTHYHWPGNVRELEN 497 Query: 454 MMERLA------LFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGD 507 +E + + P L + + + + + +L+K D Sbjct: 498 AIEYAMNMEQDTVLTADSLPPRLRARPLVAPSHSGPAIKVRVADAQADAIRASLQKHGSD 557 Query: 508 ---KTAAANYLGISRTTFWRRLK 527 K A LGI T +R+LK Sbjct: 558 LKGKQRVAEELGIGLRTLYRKLK 580 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 143/383 (37%), Positives = 216/383 (56%), Gaps = 19/383 (4%) Query: 152 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRT 211 G + VV I + G ++ + L + ++ + N T Sbjct: 89 GKKMVVQRIPIKRGGRVIAVFGQVLFKDVKDLSRLASELKVLESKVKLYEAELL-NLRST 147 Query: 212 RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQ 271 RY L ++G S ++++++ L A + VLI GE+GTGKEL AQAIH Sbjct: 148 RYTLNSIIGVSGPIKELKEEALRAAATHYPVLICGESGTGKELFAQAIHHA--------S 199 Query: 272 GKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM 331 +K PFV +NC AI + LLEAELFGYE+GAFTG+R G+ G FE+AH GTLFLDE+G++ Sbjct: 200 NRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDGKPGKFELAHQGTLFLDEVGDL 259 Query: 332 PLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSIL 391 PL +Q +LLR LE++E RVGG++ + D+R+I+AT+ +L++ M GRFR+DLFYRL+++ Sbjct: 260 PLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLDQMMADGRFRKDLFYRLNVI 319 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +PPLR+R DI+P AE L+ A + P + + +++ L ++ WPGN+REL Sbjct: 320 PINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDK----SAQAALRNHQWPGNVREL 375 Query: 452 RNMMER--LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ----ALEKFN 505 N++ER AL DL Q P S+ A + ++ ALE+ Sbjct: 376 SNVLERTLSALNGRTIGLSDLPFYLHQDRKPLSNGGSSSLKAVQARIERESICSALEQTG 435 Query: 506 GDKTAAANYLGISRTTFWRRLKS 528 +K AA LGI RT ++++K Sbjct: 436 YNKVKAAELLGIHRTLLYKKIKK 458 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 132/342 (38%), Positives = 191/342 (55%), Gaps = 28/342 (8%) Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 H T NA+ + ++G S +++ Q + A ++A VLI GE+GTGKEL A+AI Sbjct: 329 RGHRVTDNAINVNHPWRTIIGSSRVIQRAIQRAQIVAATNAPVLITGESGTGKELFARAI 388 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + PFVAVN A+ L+ +ELFGYE GAFTG+ G+ G FE A+ Sbjct: 389 HEA--------SPRGKQPFVAVNIAALPRELIASELFGYEPGAFTGAHPRGKKGKFEEAN 440 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG+MPL LQ LLRVL+EK++TR+G VDVR+I+AT+ NL + + G Sbjct: 441 GGTLFLDEIGDMPLELQVYLLRVLQEKKITRLGSTTSEAVDVRIIAATNQNLAQRVANGE 500 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++ ++LPPLR+R+AD+ +A+ FL + ++ + + Sbjct: 501 FRLDLFYRLNVVEIELPPLRDRLADVPSIAQHFLSLFAQKHDK----SVERFDPEVLNLF 556 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPRLLTP 497 Y WPGN+REL+N++E +F + DL + + L E + P + Sbjct: 557 KQYHWPGNVRELQNVIEYSVIFSETDSITVNDLPDYLTRSIFKNL--EVSDKPIYDTIEM 614 Query: 498 QQA------------LEKFNGDKTAAANYLGISRTTFWRRLK 527 A LEK NG+ + A L SRTT +R++K Sbjct: 615 SDAIENEERRLIAYWLEKTNGNISQVARQLRRSRTTIYRKIK 656 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 152/456 (33%), Positives = 221/456 (48%), Gaps = 39/456 (8%) Query: 97 LAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAV 156 LA A + T V+ AL Q + + + + + + ++ V Sbjct: 21 LAVAIRRTVDCTVLESDSPAEALKLLQDDEVSVILTDLFAPSNEGLELLKKASQHNSQIV 80 Query: 157 VGAGLITD---LAEEAGMTGIFIYSAATVRQ---AFSDALDMTRMSLRHNTHDATRNALR 210 G+ D +A E+ G F + + + L R R Sbjct: 81 TIVGVPVDHRGMALESLRRGAFFCLNTPYNHEETIIATSRALQHHDLLTKGEIKARK-FR 139 Query: 211 TRYVLGDMLGQSPQMEQVRQTILL-YARSSAAVLIEGETGTGKELAAQAIHREYFARHDA 269 ++GQ+P+M Q+ I A ++VL+ GE+GTGKEL A+AIH A Sbjct: 140 KSDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAIH--------A 191 Query: 270 RQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG 329 + FV VNC AI E LLE+ELFGY +GAFTG+ + + G + A GGTLFLDEIG Sbjct: 192 HGPRSRKNFVPVNCAAIPEDLLESELFGYVKGAFTGATQA-KMGRLQYAEGGTLFLDEIG 250 Query: 330 EMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLS 389 +M LQ +LLRVL+EKE VGG +PV VDVR+++ATH +LE+ + +GRFR DL+YRL+ Sbjct: 251 DMKASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLN 310 Query: 390 ILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIR 449 ++ LQ+PPLR+R DI L E F+ + PF LQA L Y WPGN+R Sbjct: 311 VIPLQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDALQA----LKQYPWPGNVR 366 Query: 450 ELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPRLL------------ 495 EL N+++R+++F + + DL ++ + + + L Sbjct: 367 ELENLVQRMSIFFAGQSVSRKDLPEKYQGCDEAQQQPVQEQENSISLEDGGVDFNLLVNR 426 Query: 496 ----TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 QAL G+K AA L + RTT +LK Sbjct: 427 FENQLILQALNVTGGNKREAAKLLNLKRTTLIEKLK 462 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 144/415 (34%), Positives = 206/415 (49%), Gaps = 27/415 (6%) Query: 126 FNLRLDQRSYITEE--DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 F++ + + + + + + + V+ A EA G F Y A Sbjct: 46 FDVVVTDMRLPGADGLEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFE 105 Query: 184 QAF--SDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 A S + R + +++ SP M V I + A++ ++ Sbjct: 106 PAHLLSLVERFLCQTAHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSS 165 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 V+I GE+GTGKEL A A+H R + PF+ VNC AI E+LLEAE+ GYE+G Sbjct: 166 VIIYGESGTGKELVANAVHN--------RSPRLDKPFIKVNCAAIPENLLEAEMCGYEKG 217 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ + + G E A GGT F DEIG+M PLQ +LLRVLE + RVGG +PV VD+ Sbjct: 218 AFTGALQR-KKGKLETADGGTFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDI 276 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 R I AT L +++++G+FR DL+YR+++L + LPPLRER DI L F+ Sbjct: 277 RFIFATMRRLPDEIRKGKFREDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQG 336 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLP 480 + + +L Y +PGN+REL++ +E F S TP P ++ P Sbjct: 337 RQ----VLDIAPEAMELLRSYPYPGNVRELKHAVEMAVTFCSDRVITPSCLPGEIREGSP 392 Query: 481 EL--------ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L A ES++ R T L+K G K AAA LGISR T WR+LK Sbjct: 393 ALQGWRGDAGALESSRKETER-QTIINVLKKTGGRKMAAAKALGISRETLWRKLK 446 >UniRef50_C5CLY6 Proprionate catabolism activator, Fis family n=1 Tax=Variovorax paradoxus S110 RepID=C5CLY6_VARPS Length = 659 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 194/518 (37%), Positives = 266/518 (51%), Gaps = 45/518 (8%) Query: 17 VSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIR-KKLANERCDAIIAAGSNGAYL 75 V + + EL L ++ ++ GFE A+ R +L R + + N Sbjct: 171 VGSSLVVELAEQAGLHGLLAYSLGSVRKGFEDALELARVARLEAGRYEQLNGVLHNLQEA 230 Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 ++ +I + +Q L L + Q L A + +L Q + Sbjct: 231 VLAVNRDNRVIAVNP--PMQQL-----LGPPHARLIGQS----LEAIEPELSL---QPTL 276 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + R + + VV I + E G + +Y A T+++A + Sbjct: 277 DSGQVERAVVQRFAQR--DWVVNRTPIREHGEIVGA-ALTLYDARTIQEADTSL------ 327 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 R R+ +++GQSP + QT +AR+ VLI GE+G GKEL Sbjct: 328 -----RIQQGRRQSAARHRFANLIGQSPAFLRAVQTARRFARTDLTVLIAGESGVGKELF 382 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 AQ+IH E + PFVAVNC A E+LLE+ELFGYEEGAFTGSRRGG+ GLF Sbjct: 383 AQSIHNE--------SVRAGRPFVAVNCAAFPEALLESELFGYEEGAFTGSRRGGKRGLF 434 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E AH GTLFLDEIG+MPL LQTRLLRVL+E+E+TR+G +PVDVRVI+ATH L + + Sbjct: 435 EAAHTGTLFLDEIGDMPLQLQTRLLRVLQEREITRLGATAAIPVDVRVIAATHQPLNDMI 494 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 + RFR+DLFYRL+ LRL LPPLRER DI PLAE+ + L L + L Sbjct: 495 AERRFRQDLFYRLNTLRLPLPPLRERREDIAPLAEAQVGRCLQRLGTRLDPV--RALAPL 552 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPEL-----ARESAKT 489 L YDWPGNIREL N+ ER+A+FL + D+ ++ LPEL A E A Sbjct: 553 LPRLRAYDWPGNIRELENLGERIAVFLMQFDHLEDVRYDELRHDLPELFADTAASEVADD 612 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL+ G++ AAA LG+SR+T WR ++ Sbjct: 613 TGLSAARVAAALQAQGGNRQAAARQLGVSRSTLWRWMR 650 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 5 PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDA 64 P + + P + +S ++ + E+ A I + F A+ R +L DA Sbjct: 19 PVRSGELPRLCFLSYRQIRGFAMPVVAEYTGRAEIEVVDGTFGDALAIARDRLERGLVDA 78 Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK 124 ++AGSN + L++ L PV I+ SG+D+LQAL KA +++S +GVV Y +TIP L + Sbjct: 79 FVSAGSNASILRAGLQAPVGTIQLSGFDLLQALIKARRMSSRVGVVMYGQTIPELDEVKD 138 Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 N+ + Q +Y T +DAR + +L+ G E +VG+ L+ +LAE+AG+ G+ YS +VR+ Sbjct: 139 LLNIEVVQHAYQTPDDARQRFEQLRREGFEVIVGSSLVVELAEQAGLHGLLAYSLGSVRK 198 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTR--------YVLGDMLGQSPQMEQVR 229 F DAL++ R++ N + ++ +P M+Q+ Sbjct: 199 GFEDALELARVARLEAGRYEQLNGVLHNLQEAVLAVNRDNRVIAVNPPMQQLL 251 >UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum RepID=Q93KC9_EUBAC Length = 518 Score = 449 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 203/365 (55%), Gaps = 27/365 (7%) Query: 171 MTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 G+ + +A ++ +++ R + + R Y ++G+ P+ + Sbjct: 168 TLGMVVAAAFSIEHIITESTSRKRRKMHERISEC-----RAVYNFEKIIGEDPKFLDTIE 222 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 + S + +LI GETGTGKE+ AQ+IH + PFVAVNCGAI +L Sbjct: 223 YAKKISGSKSTILITGETGTGKEVFAQSIHNY--------SDRAHMPFVAVNCGAIPLNL 274 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 +E+ELFGYEEGAFTG+++GG G F+ A GGT+FLDEIGEMP+ +Q RLLR +EE VTR Sbjct: 275 IESELFGYEEGAFTGAKKGGSEGKFQSADGGTIFLDEIGEMPIDMQVRLLRAIEEGVVTR 334 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 +GG +P+PVDVR+I+AT+ L + ++ G+FR+DLFYRL++L + L PLRER DI+ L + Sbjct: 335 IGGIRPIPVDVRIIAATNRELRQAVESGKFRKDLFYRLNVLPVCLLPLRERRMDIMLLVD 394 Query: 411 SFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD- 469 ++ L + L++Y WPGNIRE++N++E L L+ PD Sbjct: 395 YYMNKLSRRLGKKKIVFN----ETEIDTLVNYSWPGNIREVQNVVE---LVLNTGRLPDE 447 Query: 470 ---LTPQFMQLLLPELARESAKTPAPRLLTPQ---QALEKFNGDKTAAANYLGISRTTFW 523 + P E K L + +ALE+ + + A LGI+R T + Sbjct: 448 IACVQPCMRNDEYSAKKSEEEKHYDLHALEKEHITRALEECGYNISKTARKLGIARNTLY 507 Query: 524 RRLKS 528 ++++ Sbjct: 508 KKIRD 512 >UniRef50_A8S1K8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1K8_9CLOT Length = 637 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 153/520 (29%), Positives = 248/520 (47%), Gaps = 44/520 (8%) Query: 37 ANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQA 96 I P + + +R K + D ++ G+ + + + V ++ + +A Sbjct: 128 VRIYPFRSRADIESQVLRGK--RDGMDVMVGGGTLALRMGKQCGMNVCFVESGRLSLKKA 185 Query: 97 LAKA-----GKLTSSIGVVTYQETI----PALVAFQKTFNLRLDQ-RSYITEEDARGQIN 146 + +A + + + + +++ + + +Q +I + R +N Sbjct: 186 IRQAESIIYARQREKLQLKCFSSAASSIQEGILSTENGTIVVANQEMGHILNINERLILN 245 Query: 147 ELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL--------- 197 + +++ ++T + + GI + S A T + Sbjct: 246 KKAEALPSSLMAPCILTFMFHDTADDGILKINGQNYYVKKSTARSKTNQRIIAVFQGTHN 305 Query: 198 -----RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 + + N +Y D++ +S M+ + LYA ++A +LI G +GTGK Sbjct: 306 IQYQEQRVRSELRNNGFMAKYTFEDIVAESALMKSLMDKARLYASTNAGILINGNSGTGK 365 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL AQ+IH + + PFVAVNC AI SLLE+ELFGYEEGAF+G+++GG+ Sbjct: 366 ELLAQSIHNA--------SPRHNQPFVAVNCAAIPASLLESELFGYEEGAFSGAKKGGKR 417 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 GLFE+AH GT+FLDEI MP+ LQ+ LLR ++EKE+ RVG + + VD+R+ISA + N+E Sbjct: 418 GLFELAHKGTIFLDEINSMPIELQSVLLRTIQEKEIRRVGAQKNIYVDIRIISACNKNME 477 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E + G+FR DL+YRL+ L+L +P L R DI PL FLK A S P A + Sbjct: 478 ELIADGKFRADLYYRLNTLKLTMPDLETRKEDIPPLCGYFLKRYSAKYSVPIPALSPEDS 537 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEP------TPDLTPQFMQLLLPELARES 486 + +LL WPGN+REL N M R + S++ P+ Sbjct: 538 E----ILLKRSWPGNVRELENTMHRYVILSSLQHCSVNDCLDGTPPEQAASSGASQPPLE 593 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L ++ LE+ +G + A LGISR+T W++L Sbjct: 594 GTLAQMELALIRKCLEENHGSREKTAKQLGISRSTLWKKL 633 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 80/195 (41%), Gaps = 12/195 (6%) Query: 19 VTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLAN-----ERCDAIIAAGSNGA 73 ++ E+ DI +I P L +E A + KL + D II+ G+ Sbjct: 9 ISVYPEMLEDI-QAVCQTMHIEPTILQWEIAQQGLLDKLNQMFLELPKPDVIISRGATAG 67 Query: 74 YLKSRL-SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETI--PALVAFQKTFNL-R 129 ++ + I +P ++L+ L KA + S IG++ + E + + + ++ Sbjct: 68 MIEQYFPEIVSIRAEPDNLEILEILNKAREYGSRIGLILFDEYVDHYKIKTVEHLLDVEE 127 Query: 130 LDQRSYITEEDARGQINELKANGTEAVVGAGLIT-DLAEEAGMTGIFIYSAA-TVRQAFS 187 + + + D Q+ K +G + +VG G + + ++ GM F+ S ++++A Sbjct: 128 VRIYPFRSRADIESQVLRGKRDGMDVMVGGGTLALRMGKQCGMNVCFVESGRLSLKKAIR 187 Query: 188 DALDMTRMSLRHNTH 202 A + R Sbjct: 188 QAESIIYARQREKLQ 202 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 184/344 (53%), Gaps = 13/344 (3%) Query: 184 QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVL 243 QA + + R+ ++ + +++GQSP M +V T+ + A VL Sbjct: 158 QAAIAIENAQLYQALREENRRLRSEIQRLHGFDEIVGQSPAMREVFDTMARVLDTDATVL 217 Query: 244 IEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 303 IEGE+GTGKEL A+AIH +K PFV V CG++ + LLE+ELFGY++GAF Sbjct: 218 IEGESGTGKELIARAIHY--------NSERKDKPFVVVFCGSLPDELLESELFGYKKGAF 269 Query: 304 TGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363 TG+ + GLFE+A GGT+FLDE+G++ +QT LLRVL+E E+ RVG Q VDVRV Sbjct: 270 TGAL-SDKKGLFEVADGGTVFLDEVGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRV 328 Query: 364 ISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAP 423 ISAT+ L E +QQG+FR DL+YRL+ +++ +PPLR R DI LA FL A Sbjct: 329 ISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAH 388 Query: 424 FSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELA 483 + L+ +L Y WPGN+REL N +ER + E + + Sbjct: 389 IKGFTPEALE----LLERYHWPGNVRELENTIERAVVLARGELITPEDLRLPDTDGADPF 444 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L++ G+ + A LG+SR +LK Sbjct: 445 EPDLPLKEVERRVVLRTLKRHGGNISETARVLGVSRRWLHYKLK 488 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 155/404 (38%), Positives = 219/404 (54%), Gaps = 31/404 (7%) Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT-VRQAFSDALDMTRMSLRHN 200 RG I ++ G VV I + G G+ I+ + V F +++R + R Sbjct: 179 RGYIQKIY--GQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQELSREASRKE 236 Query: 201 THDA----TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 ++A + ++G+ P + V+Q I AR + VLI GE+GTGKE+ A Sbjct: 237 KNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGESGTGKEVVA 296 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH PFV+VNC AI E+LLEAELFGYE+GAFTG+++GG+ G F+ Sbjct: 297 RAIHEAGAH--------ADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKFQ 348 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +AHGGTLFLDEIG+MPL +Q ++LRVLEEK+V +VGG VDVR+I+AT+ LEE ++ Sbjct: 349 LAHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMVR 408 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FR DLFYRL+I+R+ LPPLRER DI L ++ L F + + + Sbjct: 409 DGTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHME----RLCRQFGVVSKSFAKEAM 464 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTP----- 490 VL++Y WPGNIREL N++E L + E + P ++ + P + Sbjct: 465 EVLINYSWPGNIRELVNVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQ 524 Query: 491 ------APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL NG+K AA LGI R+T + +LK Sbjct: 525 WKEIVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKK 568 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 157/445 (35%), Positives = 221/445 (49%), Gaps = 43/445 (9%) Query: 111 TYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAG 170 E + AL + L + + QI + ++ A D A A Sbjct: 35 NGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAY 94 Query: 171 MTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 G F Y +A+ + ++ H ++ D++G++P M+ V + Sbjct: 95 QQGAFDYLPKPFD--IDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFR 152 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 I +RSS +VLI GE+GTGKEL A A+HR + PF+A+N AI + L Sbjct: 153 IIGRLSRSSISVLINGESGTGKELVAHALHRH--------SPRAKAPFIALNMAAIPKDL 204 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 +E+ELFG+E+GAFTG+ R G FE A GGTLFLDEIG+MPL +QTRLLRVL + + R Sbjct: 205 IESELFGHEKGAFTGAN-TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYR 263 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 VGG+ PV VDVR+I+ATH NLE+ +Q+G+FR DLF+RL+++R+ LPPLRER DI LA Sbjct: 264 VGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLAR 323 Query: 411 SFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV------ 464 FL+V+ L + +E L WPGN+R+L N L + + Sbjct: 324 HFLQVAARELGVE----AKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQ 379 Query: 465 ------------EPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ----------ALE 502 E T + P LL + A + ++ LL+ Q AL Sbjct: 380 DLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALR 439 Query: 503 KFNGDKTAAANYLGISRTTFWRRLK 527 G K AA LG R T R+LK Sbjct: 440 HTQGHKQEAARLLGWGRNTLTRKLK 464 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 138/417 (33%), Positives = 219/417 (52%), Gaps = 40/417 (9%) Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 + + T RG ++ N E +V + G G+ D Sbjct: 290 SMHLKVLETRRPVRGVRMKVGPNEKEVIVNVAPVIVDGILKGSVGV-----------IHD 338 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 ++ ++ N L +Y D++G+S QM + L A++ A +L+ GE+ Sbjct: 339 VSEIKMLTAELNRARQIIRTLEAKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGES 398 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL A AIH E +K + F+ VNC A++E+LLE+ELFGYE+GAF+G++R Sbjct: 399 GTGKELFAHAIHNE--------SDRKYNKFIRVNCAALSENLLESELFGYEDGAFSGAKR 450 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GG+ GLFE A+ G++FLDEIGE+ +Q +LLRVL+EKE+ RVGG + +PV+VRVI+AT+ Sbjct: 451 GGKKGLFEEANNGSIFLDEIGELTQNMQAKLLRVLQEKEIVRVGGTKAIPVNVRVIAATN 510 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 N+E+ M G FR DL+YR++ + +PPLR+R+ DI L+ ++ ++ + + Sbjct: 511 VNIEKAMADGTFREDLYYRINRYPISIPPLRQRLEDIEALSVRLIQ----KINRDYGRNV 566 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLS---------------VEPTPDLTPQ 473 + Q + L Y WPGN+REL N++ R +FL+ +E + T Q Sbjct: 567 KGLSQQALRALSAYHWPGNVRELENVLGRAMIFLNPHMEWIEKDHLPVFELEQKENDTDQ 626 Query: 474 FMQLLLPELARESAKTPAPRLLT--PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 P++ E + QQ LEK + ++T A LG+S + ++ Sbjct: 627 GTGFDFPDIEGEKLSVAVEKFEAHLIQQTLEKHHFNRTKTAKALGVSIRNLYYKMDK 683 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 143/478 (29%), Positives = 223/478 (46%), Gaps = 55/478 (11%) Query: 73 AYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ 132 A L+ L+ +++ G+DV A G+ + + + Sbjct: 11 ANLRKVLAA---MLRRDGFDVTVA------ENGEQGLAEFHKN-------GADIVVTDLV 54 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 + + G I + ++ A D A +A G F Y QA ++ Sbjct: 55 MPKVGGMEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVA 114 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 + + R ++ R ++G S +++V + I A + + VLI GE+GTGK Sbjct: 115 KAAKTNESARRSVRPDVKAR---AAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGK 171 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A A+H ++ PF+ +NC AI +LLE+ELFGYE GAFTG+ + Sbjct: 172 ELIATALH--------GASSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTS-KP 222 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G FE+A GTLFLDEIGE+P+ +Q +LLR ++E E RVGG + VDVR+++AT+ +L+ Sbjct: 223 GRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQ 282 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 +++ GRFR+DL+YRL+++ + LP LRER +D+ LA F++ L+ Sbjct: 283 AEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIA---- 338 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSV--EPTPDLTPQFMQLLLPELARESA--- 487 + +L Y WPGNIREL N++ER+ LF DL Q + A Sbjct: 339 DDAMALLQGYAWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAV 398 Query: 488 ------------------KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 K + LE+ G+ T AA L ISR + ++K Sbjct: 399 ASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMK 456 >UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QTT1_9BACI Length = 614 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 137/351 (39%), Positives = 199/351 (56%), Gaps = 28/351 (7%) Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 D + M + HD N + T + ++G+S V ++ A++ A V I Sbjct: 280 HHDMIGYRVMLQKTENHDF--NFISTTFHFAGVIGKSAAFANVIKSCEKVAKTDATVHIT 337 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GETGTGKEL A+AIH+ +K+ PFVA+NCGAI + L+ +ELFGYEEGAFTG Sbjct: 338 GETGTGKELIARAIHQ--------NSRRKNRPFVAINCGAIPKELIGSELFGYEEGAFTG 389 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 ++R G G F A+GGT+FLDEIGE+P +Q LLRVL+E+EV +GG +P+PVD+RVI+ Sbjct: 390 AKRTGHKGKFVQANGGTIFLDEIGEIPPEMQIALLRVLQEREVVPIGGTKPIPVDIRVIT 449 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 ATHC+L + +++G+ R DLFYR+ + +++P LRER DI L + + + + +S Sbjct: 450 ATHCDLYQLVREGKLREDLFYRIYVYPIKVPALRERKEDIPFLIQYYCQKNNWPVS---- 505 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE 485 + + Y WPGNIREL N++ER+ + + P + + E E Sbjct: 506 -----FSNEVIQLFMTYHWPGNIRELFNVLERIRIEY-GDHIPSIPELKSMFIGWENQGE 559 Query: 486 SAKTPAPRLLTPQQA--------LEKFNGDKTAAANYLGISRTTFWRRLKS 528 K+ L +Q LEK GD AA L I R+TF+R+LK Sbjct: 560 HRKSEQKTLSYREQIEKNHMMEMLEKTKGDIARAAAELNIPRSTFYRKLKK 610 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 128/398 (32%), Positives = 214/398 (53%), Gaps = 22/398 (5%) Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 + +++ ++EL + V G + + G + + + + ++ + Sbjct: 186 VLEQKERVTLMHELFSGKKVMVTG----NPVFDSDGNITKVVTNVRDISELLELKDELEK 241 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + + + G+++ +S +++ A + VLI GETG GKE+ Sbjct: 242 TQALTRHYKEKLTEMEEKLGEGEIVAKSKVKKRLLAQAARVAAFDSTVLITGETGVGKEI 301 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+ IH+ + PF+ +NCGAI E+LLE+ELFG+E G+FTG+ + G+ G Sbjct: 302 VAKYIHQ--------NSNRSEQPFIKINCGAIPENLLESELFGHEPGSFTGASKNGKPGK 353 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FEIA+GGTL LDEIGE+ LQ +LLR L+++E+TR+GG +P +DV++I+ T+ +LEE Sbjct: 354 FEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIGGVKPRQLDVKIIACTNRDLEEM 413 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + QG FR DL+YRLS++ L +PPLRER DI L +++ + + Sbjct: 414 VSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHYIRKYNEKYG-----VNKGLSSS 468 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFMQLLLPELARESAKTPAP 492 + L+ Y+WPGN+REL NM+ERL + + ++ T DL Q + + L S Sbjct: 469 ALEELVSYNWPGNVRELENMIERLVIMVPENLIETSDLPQQIKESNVKILENLSLPDAVS 528 Query: 493 RLLT--PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +L Q+A+E+ N + AA LG++++T R+L Sbjct: 529 KLEKRMLQKAMEQSN-NTREAAQILGVAQSTVVRKLDK 565 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 139/390 (35%), Positives = 211/390 (54%), Gaps = 32/390 (8%) Query: 157 VGAGLITDLAEEAGMTGI----FIYSAATVRQAFSDALDMTRMSLRH----NTHDATRNA 208 V D EE + G ++ S V + +D LD + H N TR+ Sbjct: 298 VADKKTVDYMEEYVVNGREEKQYLVSLRPVYKQGNDELDFAILRFNHSDKINALVNTRSG 357 Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 ++ D++GQS M + + +AR+ VL+ GE+GTGKEL AQAIH Sbjct: 358 AVAKFRFEDIVGQSEAMLKAKALARRFARTRENVLLLGESGTGKELFAQAIHN------- 410 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 + PF+AVNC A+ +L+E+ELFGYE G+FTG+ + GR G E+A+GGTLFLDEI Sbjct: 411 --SHRPGGPFIAVNCAAMPRNLIESELFGYESGSFTGAEKNGRPGKIELANGGTLFLDEI 468 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 G+MP+ LQ LLRVL++K V R+GG VD R+I+AT+ +L+ Q+ +FR DL++R+ Sbjct: 469 GDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRLITATNQDLKLSAQERKFREDLYFRI 528 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 S+L +++PPLR R DI LAE F++ + P + ++ +L Y+WPGN+ Sbjct: 529 SVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLPAAV----ISPEAKRRILEYNWPGNV 584 Query: 449 RELRNMMERLALFLSVEPT-PDLTPQFM---QLLLPELARESAKTPAP-------RLLTP 497 R+L N M P+ + + LP ++ + P +T Sbjct: 585 RQLENAMIYAVNLSEEGQIMLSHLPKELSEKRTALPMVSEKECDKPEELFSMKDLEKVTI 644 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ALE+ A++ LGIS+TT +R+LK Sbjct: 645 KKALERAGNSVAIASDLLGISKTTLYRKLK 674 >UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and AAA domains) n=1 Tax=Clostridium acetobutylicum RepID=Q97LU5_CLOAB Length = 627 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 165/530 (31%), Positives = 264/530 (49%), Gaps = 58/530 (10%) Query: 36 LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGS-NGAYLKSRLSVPVILIKPSGYDVL 94 I E +T + K+ E +++ + +K L I + Sbjct: 115 GVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYG--ETINSGEESLR 172 Query: 95 QALAKAGKL--TSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQI-----NE 147 +A+ +A L +I + L A + + + IT ++ +I ++ Sbjct: 173 RAIEEALNLIEVRNIELRRSARFKAILDAIGEGIIVTDQFKKIITYNNSINKIFTKTGSK 232 Query: 148 LKANGTEAVVGAGLIT--------DLAEEAGMTGIFIYS----------AATVRQAFSDA 189 L ++V+ + + G+ I + V F D Sbjct: 233 LLGKSIQSVIPNYKVDSILKNVEPETKIIKNFNGLIIAAKQFPVKLEDKIIGVVNTFEDV 292 Query: 190 LDMTRMS--LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGE 247 + + +R H+ +Y D+L Q M ++++ LLY+++ +++LI+GE Sbjct: 293 TKIQTLEKIIRKKIHE---KGFVAKYNFDDILTQDKNMIELKKLALLYSKTDSSILIQGE 349 Query: 248 TGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSR 307 +G+GKEL AQ+IH +K+ PFVA+NC A+ E LLE+ELFGYE G+FTG++ Sbjct: 350 SGSGKELFAQSIHNS--------SPRKNGPFVAINCAALPEHLLESELFGYEGGSFTGAK 401 Query: 308 RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 367 + G+ GLFE+AH GT+FLDEIGE+ PLQ +LLRVLEEKE+ +GG + +PVD+R+IS+T Sbjct: 402 KEGKQGLFELAHNGTIFLDEIGELSKPLQAQLLRVLEEKEIMHIGGDKIIPVDIRIISST 461 Query: 368 HCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAA 427 + NL ++ G FR DL+YRL++ L LPPLRER DI LAE FL+ + FS+ Sbjct: 462 NRNLLNSIENGTFREDLYYRLNVFNLTLPPLRERGKDIEILAEHFLENT-----HNFSSN 516 Query: 428 LRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESA 487 + L L+ Y+WPGN REL N+MER++LF+ T + + +++ E ++ Sbjct: 517 RSKILNQITPFLMAYNWPGNTRELSNVMERISLFIENSMTINWSQVLYKVVHKEKIEDTL 576 Query: 488 KTPAPRLLTPQQA------------LEKFNGDKTAAANYLGISRTTFWRR 525 P LT ++ LE+++ D A L I RTT WR+ Sbjct: 577 TLKVPYNLTMKEIIELTEKRVIHSLLERYDNDHNRVAEILNIGRTTLWRK 626 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 100/217 (46%), Gaps = 13/217 (5%) Query: 22 LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSV 81 L LF ++LE + I + + I L +E DAII+ G+ Y+K +S+ Sbjct: 14 LLNLFPKLALEKNF---IPITKTASLTRASKIAFGLQDE-VDAIISRGATSDYIKKSVSI 69 Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 P I IK + +D ++A+ A + + + ++ Y+ +I + +++ + + +E++ Sbjct: 70 PSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEI 129 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSA-ATVRQAFSDA---LDMTRMSL 197 I+++K + VV +TD A + G+ G I S ++R+A +A +++ + L Sbjct: 130 TTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIEEALNLIEVRNIEL 189 Query: 198 RHNTH-----DATRNALRTRYVLGDMLGQSPQMEQVR 229 R + DA + ++ + + ++ Sbjct: 190 RRSARFKAILDAIGEGIIVTDQFKKIITYNNSINKIF 226 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 196/387 (50%), Gaps = 28/387 (7%) Query: 152 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS-DALDMTRMSLRHNTHDATRNALR 210 G ++ A I G V A + MSL+ + Sbjct: 197 GAHVLINAAPICCDGSIIGSIAAERDITEIVNLTQQLCATNAKVMSLKREIKEINAQP-- 254 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 + G + + Q T A SS VLI GE+GTGKE+ A+AIH Sbjct: 255 --DPFAAICGHNTVLRQEIATARKIAISSVPVLIRGESGTGKEVFARAIHTAS------- 305 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++ PFV VNCGAI +L E+E FGY+ GAFTG+ + G+ GLFE+AHGGTLFLDEIGE Sbjct: 306 --RRRGPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLFELAHGGTLFLDEIGE 363 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 +P +Q +LLRVL++K RVGG +PV VDVR+I+ATH NLE ++Q FR DL+YRL++ Sbjct: 364 LPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMIEQQEFRHDLYYRLNV 423 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + L LPPLR+R DI L ++ + + + V L YDWPGN+RE Sbjct: 424 VSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVM----AVFLEYDWPGNVRE 479 Query: 451 LRNMMERLALFLSVEPT--PDLTPQFMQ--LLLPELARESAKTPAP------RLLTPQQA 500 L N++ERL + DL Q LLLP+ +A P QA Sbjct: 480 LYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQNLPAATERMERTIIMQA 539 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 L K AA LGI R+T + +++ Sbjct: 540 LAAAGFRKAQAAKKLGIPRSTLYYKMQ 566 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 137/329 (41%), Positives = 187/329 (56%), Gaps = 25/329 (7%) Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 + Y +LG S M+ + + +R + LI GE+GTGKEL AQAIH Sbjct: 339 GTQASYTFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKELFAQAIHNA----- 393 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 + PFVAVNCGAI L+++ELFGY EGAFTGS RGG AG FE+A GGT+FLDE Sbjct: 394 ---SERCGGPFVAVNCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGGTIFLDE 450 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IG+MP Q LLRVL+E EVTRVG + PVDVR+++AT+ NL + G FR DL+YR Sbjct: 451 IGDMPFDAQASLLRVLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYR 510 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 L++L L +PPLR R DI LA+ FL+ +L P +R+ L +L+ + WPGN Sbjct: 511 LNVLSLSVPPLRMRREDIPTLAQHFLERCARSLRKPVRGIVREAL----DILMAHAWPGN 566 Query: 448 IRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAP----------RLLTP 497 +REL N +ER A E + + + L L ++AR +A+ + Sbjct: 567 VRELENTIERAANLAGGE---LIEAEDLPLELAQVARRAAEPAVRCGAAMDLGSHEMNAI 623 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRL 526 AL + G+ AA LG+SR + ++ Sbjct: 624 AAALRECRGNVRLAAKRLGVSRGGLYNKM 652 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 118/331 (35%), Positives = 188/331 (56%), Gaps = 15/331 (4%) Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + +G+S + ++ TI A + + VL+ GE+G GK L A+A Sbjct: 178 EEQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAMTDSTVLLLGESGVGKTLIAKA 237 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH +K PF++VNC AI E+LLEAELFGYE+GAFTG+ + G FE+A Sbjct: 238 IH--------TLSERKDKPFISVNCAAIPETLLEAELFGYEKGAFTGAVHS-KKGKFELA 288 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 +GGT+FLDEIGE+PL Q++LLRV++EKE+ ++G + + V+VRVI++T+ +L + +G Sbjct: 289 NGGTIFLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARG 348 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL+YRL+++ +++P LRER DI L + FL + + + Sbjct: 349 EFREDLYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHINIE-----KEAMEA 403 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAK-TPAPRLLTP 497 L++Y+WPGNIREL N++ERL + + + T + ++ +L + + Sbjct: 404 LVNYNWPGNIRELENLIERLVVINNKDITKEDVLLATKINSNKLQTDIPSIIESTEKEAI 463 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ALEK K+ AA LG++ R+K Sbjct: 464 KKALEKCGYVKSKAAKILGLTLRQLDYRIKK 494 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 140/399 (35%), Positives = 203/399 (50%), Gaps = 48/399 (12%) Query: 158 GAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGD 217 G+G + + I A +R+ F + H L+ RY + Sbjct: 147 GSGNLDEELRVLTTISSIIAQAVILRKQFVEERKKLEERALRLEH-----HLKDRYSIEG 201 Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 +G+S M+Q+ +++ L A+S A VLI GE+GTGKE+ A+AIH + P Sbjct: 202 WIGRSRIMQQISESVHLVAKSRATVLIMGESGTGKEVVAKAIH--------FNSPRNRRP 253 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FV +NC AI ESLLE+ELFG+E+GAFTG+ R G FE AH GTLFLDE+GE+ +Q Sbjct: 254 FVQINCAAIPESLLESELFGHEKGAFTGAHVS-RPGKFEQAHEGTLFLDEVGEISPAVQV 312 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LLRVL+E+ V RVGG + +PVDVR+I+AT+ NLEE +++ +FR DL+YRL+++ + LPP Sbjct: 313 KLLRVLQERVVERVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPIYLPP 372 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LR+R DI L FL + + + L+ +DWPGN+REL N MER Sbjct: 373 LRQRKEDIPLLVNHFLGRFNQENGRSMT-----ISPEAISALIEHDWPGNVRELENTMER 427 Query: 458 LALFLSVEPT------------PDLTPQFMQLLLPELARESAKT---------------- 489 L + + P P ++ +R+S K Sbjct: 428 LVVMTQADSIDITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAV 487 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTF-WRRLK 527 L++ KT AA LGI+ +R +K Sbjct: 488 SELERAKILDVLDRTGWIKTRAAALLGITPRQLGYRMMK 526 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 138/407 (33%), Positives = 209/407 (51%), Gaps = 18/407 (4%) Query: 127 NLRLDQRSYITEEDARGQINELKA-NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA 185 + + R +I + + ++ EL+ G + I + G G ++ + Sbjct: 162 EVIENTRMHIVAKSGKTEVAELQKIRGDYMIATRVPIIKNGQVTGAVGKVLFKNVGGFNS 221 Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 ++ L+ + + + Y +++G SP + Q ++ A+S + VL+ Sbjct: 222 LYKRVNSMEKELKRYKGEM-KELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKSDSNVLLL 280 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GE+GTGKEL A +IH E + FV VNC AI LLE+ELFGYEEG+FTG Sbjct: 281 GESGTGKELFAHSIHNE--------SRRAFGSFVKVNCAAIPADLLESELFGYEEGSFTG 332 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + +GG+ G FE A GGT+FLDEIGE+PL +Q + LRVL+EKEV ++G VDVRVI+ Sbjct: 333 AIKGGKKGKFEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVRVIA 392 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ +LE+ +Q G FR DL+YRL+++ + +P LR+R DI LA FL+ ++ Sbjct: 393 ATNRDLEKMVQAGEFRLDLYYRLNVMPITVPSLRDRKGDIPRLARYFLEKYRERMNM--- 449 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP---DLTPQFMQLLLPEL 482 R + L Y+WPGNIREL N++ER E L + + Sbjct: 450 -VARDIHPEAILALEQYEWPGNIRELENVIERAVNVAENEKMIRRCHLPEKITGVQFRSG 508 Query: 483 ARESAKT-PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 R + AL N ++T AAN L ISRT+ + ++K Sbjct: 509 VRPLEQVMEETEKEAILNALRVTNNNRTKAANLLQISRTSLYEKMKK 555 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 138/414 (33%), Positives = 220/414 (53%), Gaps = 37/414 (8%) Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 + + T RG ++ + +V + G G+ D Sbjct: 305 SMHMKVLRTRRAVRGIHMKIGQKKRDVIVNVAPVIVDGILKGSVGV-----------IRD 353 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 ++ +++ N L +Y D++G S + + L A + A VL+ GE+ Sbjct: 354 VSEIQKLTNELNRARQIIRTLEAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGES 413 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL A AIH +K + FV VNC AI+E+LLE+ELFGYEEGAF+G++R Sbjct: 414 GTGKELFAHAIHNG--------SNRKYNKFVRVNCAAISETLLESELFGYEEGAFSGAKR 465 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GG+ G FE A+ G++FLDEIGE+ Q +LLRVL+EKE+ +VGG + +P++VRVI+ATH Sbjct: 466 GGKRGFFEEANNGSIFLDEIGELSANTQAKLLRVLQEKEIVKVGGTKAIPINVRVIAATH 525 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 NLE+ + +G+FR DL+YRL+ + +Q+P LR+R DI +A+ ++ ++ + + Sbjct: 526 VNLEKAILEGKFREDLYYRLNKIPIQIPSLRQRKGDIPTIADRLIQ----KINQDYGRNV 581 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT--------PDLTPQFMQLLLP 480 ++ L Y+WPGN+REL N++ R +F++ T P + ++ Sbjct: 582 EGLTDSAILYLQSYEWPGNVRELENILGRAIIFMNYNETYIDVHHLPPLHNEEQVESKQS 641 Query: 481 ELARESAKTPAPRLLT------PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L E + P L+T + LE+F+G+KT A LGIS + +L+ Sbjct: 642 HLLPELEEKPLEHLVTEFEGNIIHEYLERFDGNKTQTAKALGISVRNLYYKLEK 695 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 140/382 (36%), Positives = 198/382 (51%), Gaps = 32/382 (8%) Query: 160 GLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDML 219 G + EA G+ +M R + N + R + +++ Sbjct: 71 GPVEKFVVEAESLGVTKTGGVHGDSP-KAKDEMARYTTVFRQVSEVLNRIEARKLFPEIV 129 Query: 220 GQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 279 QS M QV I A + + VLI GE+GTGKEL A +IHR + FV Sbjct: 130 AQSKAMRQVLSQIKRVAPTDSTVLITGESGTGKELVADSIHRH--------SQRNGRRFV 181 Query: 280 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRL 339 +NC AI ++LLE+ELFGYE+GAFTG+ + G FE A+GGT+FLDEIG+MPL Q ++ Sbjct: 182 KINCAAIPDTLLESELFGYEKGAFTGAA-ARKPGKFEQANGGTVFLDEIGDMPLETQAKI 240 Query: 340 LRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLR 399 LRVLEEKEV R+GG +P+PVDVRV++AT+ N+++ + G FR DLF+RL++ +QLPPLR Sbjct: 241 LRVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMVADGAFREDLFFRLNVFPIQLPPLR 300 Query: 400 ERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLA 459 ER DI L E F+K FS+ + +L + WPGN+RELRN +E Sbjct: 301 ERPEDIPFLIEEFMK---------FSSKESTISPPAMHILCAHQWPGNVRELRNAVESSL 351 Query: 460 LFLSVEPTPDLTPQFMQLLLP-------------ELARESAKTPAPRLLTPQQALEKFNG 506 LF P+ P + + E + +AL++ +G Sbjct: 352 LFGKEVVEPEHLPPALAGSMAVPTPAGVLISGEDESLDLDFRLQELEKGILVEALKRSDG 411 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 + AA LGI + W R+K Sbjct: 412 VQAQAARLLGIKERSLWHRVKK 433 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 147/397 (37%), Positives = 218/397 (54%), Gaps = 23/397 (5%) Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + + +L+ V+ A EA G Y + A A+ + + R Sbjct: 68 EVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAV-IENSAKRV 126 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 T R L ++ ++G SP+M++V Q + YA SSA+VLI GE GTGK+LAA+A+ Sbjct: 127 GTLRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARAL 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +++ PF A+NC + ESLL++E+FG+E+GAFTG+ R R G FE AH Sbjct: 187 H--------TNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQ-RVGRFEHAH 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG+MPL LQ +LLR LE EV RVG ++P+ VDVR+I+AT+ +L+++++ GR Sbjct: 238 GGTLFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGR 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DL++RL + ++LPPLRE DI L FLK + P + + A Sbjct: 298 FRQDLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKP----VPKVAPAVWKSF 353 Query: 440 LHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFMQLLLPELARE--------SAKTP 490 YDWPGN+RELRN++ + + L E TPD P+ + A Sbjct: 354 EGYDWPGNVRELRNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLD 413 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++AL+ G++ AA L IS T +R+++ Sbjct: 414 EVERYYIEKALDLTGGNREEAARLLNISERTLYRKIQ 450 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 133/419 (31%), Positives = 222/419 (52%), Gaps = 32/419 (7%) Query: 123 QKTFNLRLDQRSYITEEDARG----QINELKANGTEAVVGAGLITDL-AEEAGMTGIFIY 177 + +++ + ED G ++ +K+ ++V A + D E+ G IF Sbjct: 71 RNLYDIEPQAKLLRVMEDGGGRDNDEVEYIKSLNIDSVGLAFPLYDSRKEKVGACAIFKD 130 Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 V + L ++ +++ + L + Q+ +++ A Sbjct: 131 VTQVVE--LTRKLQKSKEMVQYLASQLEASELPI--SFQSYISQNKDLQKTLSLAAKVAN 186 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 ++ +LI+GE+G GKE+ A+ IH +K P + VNC +I E+LLE+ELFG Sbjct: 187 TNCTILIQGESGVGKEVMAKCIHNA--------SNRKERPMIKVNCASIPENLLESELFG 238 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YEEGAFTG+R+GG+ G FE+A+ GT+ LDEIG+M L +Q++LLRVL+EKE+ RVGG + + Sbjct: 239 YEEGAFTGARKGGKLGKFELANKGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTI 298 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 +DVRVI+AT+ NLEE +++ FR DL+YRL ++ + +P LR R DI+PL F++ + Sbjct: 299 KLDVRVIAATNQNLEEMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNG 358 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQ 476 + +L Y WPGN+REL+N++E + + + PQ+++ Sbjct: 359 GDEGT-------DLTPGAARMLEEYGWPGNVRELQNVIEYAMIVKTGDILEIKDFPQYLR 411 Query: 477 LLLPELA-------RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 E R ++AL++ NG+K+ A N LG+SR +F+ +L+ Sbjct: 412 GDGAEDGPAEDGPCRLKDAVEQLEKSMIKRALKRNNGNKSMAINELGLSRRSFYEKLEK 470 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 134/334 (40%), Positives = 189/334 (56%), Gaps = 22/334 (6%) Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + R L+ RY +++GQSP + V +T++ A + A VL+ GE+GTGKEL A+ Sbjct: 174 EDENIILRAQLKDRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKT 233 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + + PFVA+NC AI E+LLEAELFG E+GAFTG+ + R G FE A Sbjct: 234 IHFQ--------SKRAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK--RIGKFEQA 283 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 +GGT+FLDEI E+PL LQ +LLRVL+E+ V +G + + VDVR+ISAT+ +L E++++G Sbjct: 284 NGGTIFLDEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKG 343 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLF+RL+++ + +PPLRER DI L E +LK S + + V Sbjct: 344 NFREDLFWRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSVS-----IDEEALKV 398 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVE-----PTPDLTPQFMQLLLPELARESAKTPAPR 493 L+ YDWPGN+REL N +ERL + PD +L L T Sbjct: 399 LVSYDWPGNVRELANTIERLVVMTESSKIKVYDLPDTVRGVFKLKPYSLGDLKLPTEVEE 458 Query: 494 L--LTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 L + L KFN + A LG++ R Sbjct: 459 LERIRIMDTLPKFNFNIRKTAQALGLTERQLNYR 492 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 191/353 (54%), Gaps = 24/353 (6%) Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 A D++ M L ++G S QM+ + + + A+S V I Sbjct: 116 AVEIVTDISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFI 175 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 GE+GTGKEL AQAIH + P++ VNC A+ ESLLE+ELFG+ +GAFT Sbjct: 176 CGESGTGKELVAQAIHN--------LSPRAEQPYIQVNCAALNESLLESELFGHVKGAFT 227 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 G+ + R G FE AH G +FLDEIG++P+ +Q +LLRVLE K RVG ++ + VD+R I Sbjct: 228 GALQ-HRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFI 286 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 +AT+ NL + + +G FR DLFYR++++ + LPPLRER D+ L + F+K LS Sbjct: 287 TATNKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIK----RLSRKN 342 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP---------DLTPQFM 475 ++ + + + Y WPGN+REL++ +E + + D F Sbjct: 343 KKNIQGLSPEAMRIFMQYSWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQ 402 Query: 476 QLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + LP E+ + + L +AL++ +G+K+ AA LGI+R T R++ Sbjct: 403 AVDLPPAPAENLQQRQKQELI--EALKQSSGNKSQAARLLGINRVTVLNRMRK 453 >UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A8MJJ5_ALKOO Length = 494 Score = 446 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 139/395 (35%), Positives = 216/395 (54%), Gaps = 22/395 (5%) Query: 146 NELKANGTEAVVGAGLITDLAEEAG--MTGIFIYSAATVRQAFSDALDMTRMSLR-HNTH 202 + + A G + + + G + G + A + + M+ + Sbjct: 105 HVIIAKGPSKIKSFSTYIPIFNKQGKLVAGFIHVIIKGMENAIDFSFRINSMATQLEYYQ 164 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + +Y + ++G SP+++++++ I+ +R+++ VLIEGETG GKEL A +IH Sbjct: 165 QELKKIRGAKYTIDHIVGDSPEIQELKRKIIQASRTNSTVLIEGETGVGKELVAHSIHD- 223 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + S PFV VNC AI LLE+E FGYEEGAFTG+++GG+ G FE+A+ G+ Sbjct: 224 -------LSNRDSFPFVKVNCSAIPRELLESEFFGYEEGAFTGAKKGGKEGRFEMANKGS 276 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 LFLDEI ++PL Q +LLR L+EKE+ RVGG +PVDVRVI+A + NLE+ +++ +FR Sbjct: 277 LFLDEINQLPLFSQPKLLRALQEKEIERVGGKGSIPVDVRVIAAANVNLEKMIEEKKFRS 336 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DLFYRL++L++ +PPLR+R DI + ES ++ L V HY Sbjct: 337 DLFYRLNVLKIVIPPLRKRKEDIPLIVESLIEKLNFQLGMKVPGISEDAKMKLTEV--HY 394 Query: 443 DWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQAL 501 DWPGNIREL+N++ER E + + P+ + ++ ++ ++ L Sbjct: 395 DWPGNIRELQNIVERAMNSSWGETLEWVHFKDYFRSKNPKFIDKISQNNMSKIKDIKEEL 454 Query: 502 EK--------FNGDKTAAANYLGISRTTFWRRLKS 528 EK + K AA LGISRT F+++LK Sbjct: 455 EKETIINALENSKSKAEAAKKLGISRTAFYKKLKK 489 >UniRef50_B0TS74 Putative sigma54 specific transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=B0TS74_SHEHH Length = 555 Score = 446 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 123/322 (38%), Positives = 181/322 (56%), Gaps = 21/322 (6%) Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 +++G+S +M Q++ I A+S +++LI GE+GTGKE+ AQAIH+ + Sbjct: 242 FSNIIGESNKMLQLKTLIARVAKSPSSILISGESGTGKEVFAQAIHKY--------SDRS 293 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 FVA+NC AI E LLE+ELFGY +GAFTG+ G+ GL + A+ GTLFLDEIG+M + Sbjct: 294 EQNFVAINCAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMT 353 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ++LLRVLEE+EV +G + PV++R+ISAT+ N E + FR DL+YRL+++ L Sbjct: 354 LQSKLLRVLEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLY 413 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LP LRER DI L FL A+ + + L Y WPGNIREL N+ Sbjct: 414 LPALREREGDIELLVYYFLDRHSQAIGTCY----PGITEEVINSLNAYHWPGNIRELSNL 469 Query: 455 MERLALFLSVEPTPDL--------TPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNG 506 +E L + D+ TPQ + + ++ + + ++ + G Sbjct: 470 VEYLVNIVPSGDQIDIDLLPPYFDTPQESCTPMVSINDDNVSLEEMERIKIEDSINRL-G 528 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 ++ A LGI T +R+LK Sbjct: 529 NRKLVAKELGIGVATLYRKLKK 550 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 446 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 143/478 (29%), Positives = 221/478 (46%), Gaps = 50/478 (10%) Query: 84 ILIKPSGYDVLQALAK---AGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 ILI + + Q+ + A + A + + I+ + Sbjct: 8 ILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVR-MPGISGLE 66 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLR 198 A + E + ++ A TD+A EA G + Y + Sbjct: 67 AYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKAVAAGRS 126 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + A ++G+S M+ + + I A + A VLI GE+GTGKEL A+A Sbjct: 127 MRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARA 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +++ + PF+ +NC AI E+LLE+ELFGYE+GAFTG+ G + G E A Sbjct: 187 VYQH--------SLRADKPFLVINCVAIPETLLESELFGYEKGAFTGAT-GRKVGKIEQA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 + GT+FLDEIG+MPL +Q ++LR+L+E+ V R+GG Q +PVDVR+I+AT+ +LE ++ G Sbjct: 238 NRGTVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAG 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 +FR DL+YRL ++ + +PPLRER DI L FL + P + + Sbjct: 298 QFREDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQP----DPGVSDEAMAL 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAP------ 492 L WPGN+REL N +++ +F P L P +Q E R A Sbjct: 354 LTTQPWPGNVRELGNTVKKALIFNLGAP---LGPDEVQKASGEPLRGGGPAEADPGDSLA 410 Query: 493 ----------------------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 LL ++ALE G+++ AA LG+SR T +++ Sbjct: 411 RYVRRELASGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEK 468 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 142/465 (30%), Positives = 221/465 (47%), Gaps = 37/465 (7%) Query: 79 LSVPVILIKPSGY---DVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 + P ILI D + A Q+ + + + + Sbjct: 1 METPKILIADDDKKTRDFVAAFLSYKGYQVYQA-FDGQDALQKIELHEVQMVITDIMMPR 59 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + Q+ ++ + A ++ G F Y + + Sbjct: 60 VNGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFN--LEELETHVKR 117 Query: 196 SLRHNTHDA----TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 L H + ++ ++ R +L +++G+S +M + + I A S + VLI+GE+GTG Sbjct: 118 GLEHQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTG 177 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KEL A+AIH + FVA+NC AI + LLE+ELFG+ +G+FTG+ R Sbjct: 178 KELVARAIHD--------LSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAV-ASR 228 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 G FE+A GTLFLDEIG+M LQ +LLRVL+ +E+ VG + VDVR+I+AT+ NL Sbjct: 229 IGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNL 288 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 + + FR DL+YRLS++ + LPPLRER +D+ L SFL+ + +Q Sbjct: 289 DHMVASKEFREDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQV 348 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALF--LSVEPTPDLTPQFM-----------QLL 478 ++ +L +YDWPGN+REL N++ERL + V DL ++ + Sbjct: 349 ME----ILSNYDWPGNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMT 404 Query: 479 LPELAR-ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 LP+ ++ QALEK G+K AA L + RTT Sbjct: 405 LPDDGFCLNSAVEEFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 201/353 (56%), Gaps = 22/353 (6%) Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 D ++ R+S + L Y +++G S +M + A++S +L+ Sbjct: 313 IHDVSELNRLSSQLQHAQKRLATLEATYSFSEIVGTSKEMAFAIEQAKRGAKTSFPILLL 372 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GETGTGKEL A AIH E +K PFV VNC A+ E+LLE+ELFGYE+GAF+G Sbjct: 373 GETGTGKELFAHAIHNE--------SERKGQPFVRVNCAALTETLLESELFGYEQGAFSG 424 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + + G+ GLFE A G++FLDEIGEM Q +LLRVL+E+E+ RVGG +P+P+ VRVI+ Sbjct: 425 ALKSGKKGLFEEAEHGSIFLDEIGEMSPNTQAKLLRVLQEQEIVRVGGTKPIPIHVRVIA 484 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ +LE +++ RFR DL+YRL+ L +++PPLRER++D+ L + L+ L+ + Sbjct: 485 ATNVDLEGAIRERRFREDLYYRLNKLPIRIPPLRERLSDLPALIDHLLR----KLNLDYG 540 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE 485 ++ + + Y WPGN+REL N++ R +++ + T Q RE Sbjct: 541 HNIQSISKLVLSRFEGYYWPGNVRELENVLARSMIYMDLGATELTDVSLPQEFGQSGKRE 600 Query: 486 SAKTPAPRLLT----------PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + AP+ L ++ L + +G KT AA LGIS + + +L+ Sbjct: 601 ESDATAPKQLQAFLAEKEKEHLRRTLAEVDGVKTEAAKLLGISIRSLYYKLEK 653 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 187/362 (51%), Gaps = 20/362 (5%) Query: 175 FIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTR--YVLGDMLGQSPQMEQVRQTI 232 I + V+ S + + + H N + + Y D++ ++ +M+ + + Sbjct: 107 CITNIMPVKLQDSIIGAIISIRDTRHIHKLVNNVVGYKASYTFDDIITKNQKMKSIIELA 166 Query: 233 LLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 292 + S ++LI+G +GTGKEL AQAIH + PFVAVNC AI L+E Sbjct: 167 KKASESDCSILIDGNSGTGKELFAQAIHNH--------SNRCHGPFVAVNCAAIPRELVE 218 Query: 293 AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVG 352 +ELFGYE+GAFTG+ +GG G FE+A GGT+FLDEIGE+PL +Q++LLRVL+ ++ RVG Sbjct: 219 SELFGYEKGAFTGASKGGYPGKFELADGGTIFLDEIGELPLDIQSKLLRVLDNLKIMRVG 278 Query: 353 GHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESF 412 G +D+RV++AT+ NL E++ FR DL+YRL+++ + L PL++RV D+ L F Sbjct: 279 GTHEKKIDIRVLAATNRNLSEEVSNKNFRGDLYYRLNVINVHLIPLKDRVEDVEALTNCF 338 Query: 413 LKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD--- 469 + L+ ++ L Y WPGN+RELRN++ER D Sbjct: 339 VD----KLNIKNPGNFKKIAPEFMDKLKAYHWPGNVRELRNIVERSYYICEDNIITDKFL 394 Query: 470 ---LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L ++AL G+ A+ LGISR T +R++ Sbjct: 395 NNKLMKNEHHNCCIGKEEPIVPLDILEHKAIEKALIHCKGNIVQASELLGISRATIYRKI 454 Query: 527 KS 528 Sbjct: 455 NK 456 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 138/412 (33%), Positives = 208/412 (50%), Gaps = 29/412 (7%) Query: 133 RSYITEEDARGQINELKANGTEA--VVGAGLITDLAEEAGMTGI---FIYSAATVRQAFS 187 EE + INE ++ ++ AG D+ E + +I + V + Sbjct: 291 FKIRPEEKSHKNINEFLHTHSQVAALITAGKSVDIEENLVIGNDEQPYIINIRPVLNKKT 350 Query: 188 DALDMTRMSLRH----NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVL 243 ++ + L H N A R Y ++G+S ++++ +A SS VL Sbjct: 351 QQIEAAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEIKKAVSIARRFATSSENVL 410 Query: 244 IEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 303 + GE+GTGKEL AQAIH PF+AVNC A+ L+E+ELFGYE G+F Sbjct: 411 LMGESGTGKELFAQAIHNHSCPL---------GPFMAVNCAAMPRELIESELFGYEGGSF 461 Query: 304 TGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363 TG+ R GR G E+AHGGTLFLDEIG+MPL LQ LLR LE+K++ R+GG + VD R+ Sbjct: 462 TGAERTGRPGKIELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMRIGGRRYKKVDFRL 521 Query: 364 ISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAP 423 I+AT+ NL + +++ ++R DL++RLS+L + +P LR R DI L++ F+K Sbjct: 522 IAATNKNLFKMVKERQYREDLYFRLSVLTITIPSLRNRKNDIDVLSQYFIKNYCQKQGWK 581 Query: 424 FSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLL--- 479 + + + + Y+WPGN+R+L+N + + D PQ++ L Sbjct: 582 ----TPKITKGALRKIQEYEWPGNVRQLQNALIYAVNSAHNDVIDTDSLPQYILLDSSPF 637 Query: 480 ---PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 P +S + AL AA LGISR+T +R+LK Sbjct: 638 QDEPNFTTDSLSLEHLEKNAIKTALLHAKNSIPDAAKLLGISRSTLYRKLKD 689 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 146/424 (34%), Positives = 226/424 (53%), Gaps = 29/424 (6%) Query: 119 LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS 178 L + L + I +A QI + + VV A +A G F Y Sbjct: 52 LDSTSVDVILLDLRLPGIGGLEALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYV 111 Query: 179 AATVR--QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYA 236 + +T + R ++ R+ G M+G++P+ME++ + I A Sbjct: 112 TKPFNMDELRILLDRVTGHLKLTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAA 171 Query: 237 RSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELF 296 S+ VLI GE+GTGKE+ A+A+H K PF+ V+CG++ +L+E+ELF Sbjct: 172 NSTHPVLIMGESGTGKEVVARAVHYTGCY--------KDKPFIPVDCGSLVPTLIESELF 223 Query: 297 GYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQP 356 GY +GAFTG++ + GL +A GGT+FLDEIGE+P+ LQ++LLR L+EKE+ VGG + Sbjct: 224 GYVKGAFTGAQHS-KQGLLAMADGGTVFLDEIGELPIDLQSKLLRALQEKEIRPVGGTRA 282 Query: 357 VPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVS 416 VP++VR+++AT+ +LE+ +QQG FRRDL++RL++L L++PPLR+R DI L FL+ + Sbjct: 283 VPINVRILAATNRDLEQAVQQGTFRRDLYFRLNVLTLRIPPLRDRKQDIPLLVGHFLERT 342 Query: 417 LAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV--EPTPDLTPQF 474 A + R + ++L YDWPGN+REL + ++R S T DL Sbjct: 343 ERA-----TGFQRNISDEALKLMLTYDWPGNVRELEHCLDRACALTSGPTINTLDLPTTI 397 Query: 475 MQLLLPELARESAKTPAP-----------RLLTPQQALEKFNGDKTAAANYLGISRTTFW 523 + + + PA +A+E+ +GDK AA LGI +TT + Sbjct: 398 QNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAILEAIERLHGDKLEAARLLGIGKTTLY 457 Query: 524 RRLK 527 R+LK Sbjct: 458 RKLK 461 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 151/426 (35%), Positives = 212/426 (49%), Gaps = 43/426 (10%) Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT--- 181 + + ++ D +N+ ++ A A +A G F Y Sbjct: 47 DLIISDLKMPRMSGIDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDN 106 Query: 182 ------VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLY 235 V +A + L + R+ ++G SP ME +R I Sbjct: 107 EEMLLTVDKALDYSKLQNENWLLRRELEQNRDRT--------LVGNSPAMESLRNQIAQV 158 Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 A + ++LI GE+GTGKEL AQA+HR + + V++NC A AE+LLE+EL Sbjct: 159 APAKTSILITGESGTGKELVAQALHR--------LSPRSNKALVSINCAAFAENLLESEL 210 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FG+E GAFTG+ + GL E++ GGTLFLDEIGE PL LQ +LLRVL+EK RVGG Sbjct: 211 FGHERGAFTGALER-KKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTA 269 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 + D+R+I+ATH NLE+ + +G FR DL+YRL+++ L LPPLR R DI L++ FL+ Sbjct: 270 EISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIPLLSQLFLER 329 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQF 474 + P L Q ++ L HY+WPGN+REL+N++ER LF + PQ Sbjct: 330 LSRDMGCP----LPQLSSQAQHDLYHYEWPGNVRELQNILERGLLFCDGPTLEQNHLPQQ 385 Query: 475 MQLLLP------ELARESAKTPAPRLLT------PQQALEKFNGDKTAAANYLGISRTTF 522 P E A + P P L Q AL G + AA LGISR+ Sbjct: 386 FHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQAALIDARGVQAKAAELLGISRSNL 445 Query: 523 WRRLKS 528 +LK Sbjct: 446 QYKLKK 451 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 144/467 (30%), Positives = 223/467 (47%), Gaps = 35/467 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKT---FNLRLDQRSYITEED 140 +LI + + L + + VV L K + + D Sbjct: 14 VLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSNSID 73 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + A+ V+ A A + G+F Y A + + + Sbjct: 74 FIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKVSSL 133 Query: 201 THDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 T + R AL +Y G+++G SP + + + + R+ + VL+ GE+GTGKEL ++A Sbjct: 134 TIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRA 193 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH +K PFVA+NC AI E+LLE+ELFGYE+GAFTG+ + + G FE+A Sbjct: 194 IHY--------NSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKT-KKGRFELA 244 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGT FLDEI EM +Q ++LR++E KE+ R+GG + VDVR+I AT+ +L + +++G Sbjct: 245 AGGTFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEG 304 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 +FR DL+YR+S+ + LP LRER DI+PL++ F+ A + E + Sbjct: 305 KFRDDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIV----LSSEVEKI 360 Query: 439 LLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFMQLLLPELARESAKT------- 489 L+ + W GNIREL+N++ER + V T L + P E+ Sbjct: 361 LIKHKWEGNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFD 420 Query: 490 --------PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +ALE+ + T AA LG++R TF RL+ Sbjct: 421 IPPNGLSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQK 467 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 139/402 (34%), Positives = 213/402 (52%), Gaps = 25/402 (6%) Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMT 193 ++ D + +L A++ + A ++ G + Y R + M Sbjct: 63 LSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMA 122 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 + R + T L ++G S +++ V + + + VLI GE+GTGKE Sbjct: 123 EKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKE 182 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+A+H R G PFVAV+CG++ +L+E+ELFG+E+GAFTG+ + + G Sbjct: 183 LVARAMH--------FRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIK-PKEG 233 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 LF+ A+GGT+FLDEIGE+PL LQ +LLRVL++K+V VG +Q V VDVRVI+AT+ +LE Sbjct: 234 LFQAANGGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEA 293 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 + G FR+DL++RL+++ + LP LRER +DI L + F+ A + Sbjct: 294 GYKTGTFRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA------GREGVEVTS 347 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELAR-------E 485 + L+ YDWPGN+REL N +ER + E D P +Q + P+ + Sbjct: 348 QAMKSLMQYDWPGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYD 407 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 S T Q+ ++ GDK A LGISR T +R++K Sbjct: 408 STDLEDIERTTIQRVFDQVGGDKGLALKMLGISRATLYRKIK 449 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 132/442 (29%), Positives = 227/442 (51%), Gaps = 33/442 (7%) Query: 95 QALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTE 154 A + + + + + + F + L + + +++ ++E++ G Sbjct: 151 SAYERISGMKKEEVLGKHMQELVDKGYFSDSVTLHV-----LEKKERVTMMHEIRKTGKR 205 Query: 155 AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYV 214 A++ I D E G + + + + + D+ + + + LR++ + Sbjct: 206 ALITGNPIFD---ENGEIVRVVTNVRDITELLNLKQDLEDKAKQAARYQNELAQLRSKSI 262 Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 D++ +SPQM + + + VLI GE+G GKE+ Q ++ Sbjct: 263 YDDIVVESPQMRHIFDLATWVGQVDSTVLILGESGVGKEVVTQ--------IVVRSSERR 314 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PF+ VNCGAI E+LLE+ELFGYE+G+FTG+ + G+ G+FE+AH GT+ LDE+ E+PL Sbjct: 315 DEPFIKVNCGAIPENLLESELFGYEKGSFTGADKKGKPGMFELAHKGTILLDEVAEIPLN 374 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLR ++E+E+ RVGG +P+ +DVR+I+AT+ +L+E ++ G+FR DLFYRL+++ + Sbjct: 375 LQVKLLRAIQEQEIIRVGGTKPLKLDVRIIAATNRDLDELVRTGQFREDLFYRLNVIPIT 434 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLRER DI L E FL + + L+ YDWPGN+REL+N+ Sbjct: 435 VPPLRERREDIPALIELFLCKYNEKY-----RLNKTLAPETVERLVSYDWPGNVRELQNI 489 Query: 455 MERLALFL-SVEPTPDLTPQFMQLL----------LPELARESAKTPAPRLLTPQQALEK 503 +ER+ + E PD P ++ + + + +AL+K Sbjct: 490 VERMVVLSRDDEVGPDALPLQLKSVGKTDADFHVDVSGVVPLKDALFEVEKKLVVKALQK 549 Query: 504 FNGDKTAAANYLGISRTTFWRR 525 + G AA LG+ ++T R+ Sbjct: 550 Y-GTTRRAAEALGVDQSTVVRK 570 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 130/399 (32%), Positives = 210/399 (52%), Gaps = 21/399 (5%) Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGI--FIYSAATVRQAFSDALDMT 193 + + E ++ + A +A G F+ + ++ + Sbjct: 62 FSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKLV 121 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 + + L +Y L ++G S M++V + + ++A VLI GE+GTGKE Sbjct: 122 EKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGKE 181 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+ IH +K +P V +N AI E++LE+ELFG+E+G+FTG+ R G Sbjct: 182 LIAKTIHN--------NSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQ-RKG 232 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FE AH GT FLDEIG+MPL Q +LLRVLE+ +TR+G ++ + VDVR+I+AT+ L Sbjct: 233 KFEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGN 292 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 +++G+FR DL++RL+++R++LPPLRER+ DI L ++F++ S +S + Q Sbjct: 293 LIKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIR----EFSRLYSKEILQITP 348 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALF-----LSVEPTPD-LTPQFMQLLLPELARESA 487 + +LL Y WPGNIREL+N +E + + L VE PD + + ++ + Sbjct: 349 EARKILLRYQWPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGM 408 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + L G++ AA LGI T +R+L Sbjct: 409 TMEDAEIELIKCTLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 135/421 (32%), Positives = 217/421 (51%), Gaps = 27/421 (6%) Query: 120 VAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGL--ITDLAEEAGMTGIFIY 177 + L+Q +D E+ G A +++L Sbjct: 179 DSSHDPAGTSLEQIPLDCHDDVIKVFQEVMQQGKVAFARYQGENLSELTITGSPILDDQN 238 Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 S V + D ++ ++ L+ + +LRT+ D++ ME+V + L + Sbjct: 239 SPVHVVISLHDFTELNQLRLQSARYSEELKSLRTKNQ-KDLIFHDTAMERVVKKALRVSE 297 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 + VLI GE+G GKE+ A+ IHR + PF+ +NCGAI E LLE+ELFG Sbjct: 298 VDSTVLITGESGVGKEVIARTIHR--------NSPRAEGPFIEINCGAIPEHLLESELFG 349 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE+GAFTG+ + G+ G+ E+A+GGTL LDE+G++PL LQ +LLR L+E+E+ R+GG V Sbjct: 350 YEKGAFTGANKEGKPGMMELANGGTLLLDEVGDLPLNLQVKLLRALQEQEIYRIGGRTAV 409 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 ++VR+++AT+ NLE+ + + +FR DLFYRL+++ + +PPLRER +DILPL+ FL+ Sbjct: 410 KLNVRILAATNKNLEQMIAEKKFREDLFYRLNVVPIHIPPLRERKSDILPLSMHFLEKFN 469 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTP---- 472 + R + Y WPGNIREL N++ERL + E PD P Sbjct: 470 NKYN-----FHRLFSSEVFKLFEQYPWPGNIRELANLVERLIIMSEQETIYPDQLPPTFF 524 Query: 473 -----QFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +Q+ + E+ +AL+++ A + LG++ +T R+ + Sbjct: 525 GKPSTSPLQISIDEIIPLKEAREQVESELIVKALKQYR-SLRRAGDALGVAHSTLLRKAR 583 Query: 528 S 528 + Sbjct: 584 A 584 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 228/473 (48%), Gaps = 44/473 (9%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 VP +LI + L +A + + + + L+ Q F++ + + + Sbjct: 2 VPSVLIVDDEKHTREGLQQALVDSYDVSLAASADEAFNLMDAQP-FDVIVTDLR-MPGKS 59 Query: 141 ARGQINELKANG---TEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 I++ A ++ A + A EA G + V + + +L Sbjct: 60 GLKVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVN--IERLEVLIQRAL 117 Query: 198 RHNTHD----ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 + T + L ++ ++G SP++ +V + L A S A +LIEGE+GTGKE Sbjct: 118 KAKTLEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKE 177 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L AQAIH+ + PF+AV+C A++E+LLE+ELFG+E G+FTG+ R G Sbjct: 178 LIAQAIHQS--------SSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATER-RIG 228 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FE A GGTLFLDEIGE+ Q +LLR LE K + RVGG +P+ +DVR+++AT+ LE+ Sbjct: 229 RFESADGGTLFLDEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQ 288 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 ++ G+FR DLF+RL+++R+ +PPLRER D+ L ++ P L Sbjct: 289 LVRDGKFREDLFFRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGAL- 347 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPA 491 L Y WPGNIRELRN E + DL P++ L + A Sbjct: 348 ---ATLQAYPWPGNIRELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGA 404 Query: 492 P------------------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 P ++AL K G++T AA +GISR T R++ Sbjct: 405 PGSTVLGGAVPTSFSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKI 457 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 198/367 (53%), Gaps = 52/367 (14%) Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + L+ +Y G ++G++ ME++ + I L A S A+VLI GE+GTGKE+ A AI Sbjct: 346 RENIQLKRELKNKYKFGSLIGKAASMEKMFEKIQLVADSRASVLITGESGTGKEMIANAI 405 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + +PFV +NC AI E+LLE+ELFG+++G+FTG+ + G FE+A Sbjct: 406 HY--------NSSRSENPFVKINCAAIPENLLESELFGHKKGSFTGAVTD-KKGKFELAD 456 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIGEM L LQ++LLRVL+E+E+ +G + VDVR+I+AT+ LE+ + + + Sbjct: 457 TGTIFLDEIGEMDLNLQSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKK 516 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++++ PPLR+RV DI L FL+ + + +++ + + +L Sbjct: 517 FRADLFYRLNVVKINTPPLRDRVEDIPLLMNHFLE----KYTKDNNKSIKGISREASRLL 572 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTP--------- 490 L Y WPGN+REL N++ER + E + + + E+ + + Sbjct: 573 LKYRWPGNVRELENVIERAVVLAQDEILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVS 632 Query: 491 ------------------------------APRLLTPQQALEKFNGDKTAAANYLGISRT 520 Q A++KF KT A +LGI+R Sbjct: 633 GAEPLDLGSGRLTSGQLDGLDGRAMEIVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRN 692 Query: 521 TFWRRLK 527 T +++K Sbjct: 693 TLDKKIK 699 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 135/380 (35%), Positives = 213/380 (56%), Gaps = 19/380 (5%) Query: 155 AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYV 214 VV ++ + + G G ++ + ++ L + + + +Y Sbjct: 93 IVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFYRQELYK-FYNAKYT 151 Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 DM+G+S +++V++ A S + VLI GE+GTGKEL AQAIH + Sbjct: 152 FNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNA--------SYRS 203 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFV +NC A+ E+LLEAELFGY EGAFTG+++GG+ G FE+A GGT+FLDEIGE+PL Sbjct: 204 RFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGELPLS 263 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 +Q++LL VL+E+E+ RVGG + V VD RVI+AT+ NLE+ +++G FR DL+YRL+++ L+ Sbjct: 264 MQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNVISLK 323 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +P LRER DI L F L+ ++ + + + VL + WPGNIREL+N Sbjct: 324 IPSLRERQDDIPLLVNYF----TDKLNNKLKCSVERFTEEAMLVLSKHYWPGNIRELQNT 379 Query: 455 MERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQ-----ALEKFNGDK 508 +ER+ + + P +++ + + T + ++ L D+ Sbjct: 380 LERVFILSDDNIISVNHLPFSIKMRKGNIIQSKRLTLDEMIDQTEKRIILDTLSNVKDDR 439 Query: 509 TAAANYLGISRTTFWRRLKS 528 AAA LGI ++ +R++K Sbjct: 440 IAAAELLGIHLSSLYRKMKK 459 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 137/400 (34%), Positives = 205/400 (51%), Gaps = 30/400 (7%) Query: 140 DARGQINELKANGTEAVVGAGLI-TDLAEEAGMTG----IFIYSAATVRQAFSDALDMTR 194 + I +LKA E V A + A + ++ + + + Sbjct: 61 NGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 ++ ++ R +L +++G+S +M + + I A S + VLI+GE+GTGKEL Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH + + FV VNC AI + LLE+ELFG+ +G+FTG+ R G Sbjct: 181 VARAIHD--------LSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAV-ATRIGR 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A GTLFLDEIG+M LQ +LLRVL+ KE+ VG + VDVR+I+AT+ NLE Sbjct: 232 FEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHL 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + FR DL+YRLS++ + LPPLRER DI L +FL+ + ++ + Sbjct: 292 VASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLE----KFNRNKQRKVQSFDKN 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLT---------PQFMQLLLPELA 483 + +L ++DWPGN+REL N++ERL + DL P+ +L LP+ Sbjct: 348 TMDILCNFDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTG 407 Query: 484 R-ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 ++ QALEK G+K AA L + RTT Sbjct: 408 FCLNSAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 154/438 (35%), Positives = 218/438 (49%), Gaps = 35/438 (7%) Query: 113 QETIPALVAFQKTFN-----LRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 167 QET+ A + + + A +N + G E Sbjct: 153 QETLGAFRRLIDAMDRGVVAIDGKGLIWHANHSADRILNREVQGLPLTIETTGDSLYGDE 212 Query: 168 EA--GMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLG---DMLGQS 222 EA + G + S D M + + HD N + Y ++G S Sbjct: 213 EAWLTLEGQKHHVLCKQISLSSQDNDRLTMIIFRDAHDYLSNLTPSPYESDMQVRLIGHS 272 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 P MEQ+R TI A S A+VLI GE+G+GKE+ A AIH+ +K+ PFV +N Sbjct: 273 PSMEQLRSTIGKIANSYASVLITGESGSGKEVVAFAIHQS--------SPRKAAPFVTIN 324 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 C AI E LLE+ELFGY GAF+G+ GR G FE+A+GG+LFLDEIG+MPL LQ +LLRV Sbjct: 325 CAAIPEQLLESELFGYVRGAFSGADPKGRMGKFELANGGSLFLDEIGDMPLHLQAKLLRV 384 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 L+EK +TRVG + + +DVR+I+AT+ N+ ++ +FR DLFYRL+++ L LP LRER Sbjct: 385 LQEKAITRVGSNNTINIDVRIIAATNKNINAMVENNQFREDLFYRLNVVPLVLPSLRERR 444 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 ADI LA+ F + P + L + WPGNIRELRN++E + + Sbjct: 445 ADIAVLAQYFADEFSVSYQRPPQKLPDDVI----NRLYAWHWPGNIRELRNVIEYIFVMR 500 Query: 463 SVEPTPDLTPQFMQLLLPELARESAKTPAPRLL----------TPQQALEKFNGD---KT 509 + + LL R++ T PR L + +++F K Sbjct: 501 GEAAGINASHLPPYLLTAADGRKTTMTAQPRQLASKGKQAEREAIENVIQRFGSSVEGKK 560 Query: 510 AAANYLGISRTTFWRRLK 527 AA LGIS T +R++K Sbjct: 561 QAATELGISIATLYRKIK 578 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 139/428 (32%), Positives = 208/428 (48%), Gaps = 26/428 (6%) Query: 113 QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMT 172 +E L ++ + ++ + ++ V+ A A EA Sbjct: 37 EEAFAILDKASQSLVMTDLHLPGMSGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKA 96 Query: 173 GIFIYSAATVRQAFSDALDMTRMSLRHNTHDA---TRNALRTRYVLGDMLGQSPQMEQVR 229 G + + + + + + R H + R AL +Y ++G S Q+ + Sbjct: 97 GAYDFLTKPI-HPYELKMLVRRCLEHHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRAL 155 Query: 230 QTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES 289 A + A +LI GETGTGKEL A+AIH R ++ PF+ +NCGAI + Sbjct: 156 DVAARVASTDATILIYGETGTGKELVAKAIH--------LRSSRRDRPFITINCGAIPKE 207 Query: 290 LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT 349 LLE+ELFG+ +G+FTG+ + G E+A GGT+ LDEIGEMPL LQ R+LR+++E+E+ Sbjct: 208 LLESELFGHVKGSFTGAL-THKKGKVEMADGGTVLLDEIGEMPLELQVRILRLIQEREIE 266 Query: 350 RVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLA 409 +VG P VDVR+++ATH L ++ G FR DL+YRL ++ + LPPLRER DIL L Sbjct: 267 KVGATSPTKVDVRIVAATHRELAGMVKAGTFREDLYYRLLVVPINLPPLRERTGDILILV 326 Query: 410 ESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-P 468 + FL+ S P L +Y WPGN+R+L N +ERL L Sbjct: 327 QHFLEKCRMKHSRPNLMMSTDLLP----YFTNYSWPGNVRQLENAVERLVLLARDSTINA 382 Query: 469 DLTPQFMQLLLPELARESAKTPAPRLLTPQ--------QALEKFNGDKTAAANYLGISRT 520 P F+ + + QAL+K+ G++T AA YL +SR Sbjct: 383 SDLPDFLSAAPAPPPEPVPVALPEGGINLEDLEKDLILQALKKYAGNQTRAAQYLNMSRR 442 Query: 521 TFWRRLKS 528 F RL+ Sbjct: 443 AFAYRLEK 450 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 138/334 (41%), Positives = 198/334 (59%), Gaps = 21/334 (6%) Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + L +Y D++G SP + + Y+R + VLI GETGTGKEL A +IH Sbjct: 318 RQSLAKQGLTAKYSFDDIIGSSPAIRENILMAKRYSRVDSNVLIVGETGTGKELFAHSIH 377 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 RE + + PFVA+NC A+ E+LLE+ELFGYE GAF+G+ + G+ GLFE+AH Sbjct: 378 RE--------SRRSAEPFVALNCAALPENLLESELFGYEPGAFSGASKNGKTGLFELAHK 429 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIGE+P+ LQ +LLRVL+E+E+ R+G ++ PVDVRVISAT+ N+EE +Q+G+F Sbjct: 430 GTIFLDEIGEIPISLQAKLLRVLQEREIRRIGSNRVQPVDVRVISATNINIEEKIQEGQF 489 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YRL++L + +PPLRER DI + + +L + P + + + + ++ Sbjct: 490 RADLYYRLNLLDITIPPLRERGDDIREMVDFYLTRFACEMGKP----IPRLSKEAVDLMT 545 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQL------LLPELARESAKTPAPRL 494 HY WPGN+RELRN+ ERL + Q +++ LP +T P Sbjct: 546 HYGWPGNVRELRNICERLIVLSDTTEIGLREIQMLKIFRKKEGPLPGTQTPDKETDQPET 605 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWR--RL 526 L K K A LG+SRTT WR ++ Sbjct: 606 GIVYANL-KPRKKKQDIAKELGVSRTTLWRMEKM 638 Score = 59.8 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 14/221 (6%) Query: 20 TRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRL 79 +R + + D + + E Y D ++A G L+ Sbjct: 27 SRFEAAVSRLEPQDDVRVELLHVFGTPESLSRY-------GDADILVARGMTYDRLRYLF 79 Query: 80 -SVPVILIKPSGYDVLQALAKAGK--LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 V+ I+ S +D+L+AL A + I + A+ +K + + Sbjct: 80 PEKHVVEIQLSSFDILKALICARQEFHPKKIALCVRYMDESAVSELEKLCQAEIAYYTVH 139 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIY-SAATVRQAFSDALDMTRM 195 E I+ +ANG + VGAG + L ++ + + I+ + QA A+D R Sbjct: 140 DEASTLEAIHSARANGADVFVGAGTMCGLCDKEALNRVHIHTKDIAIEQALKQAMDAART 199 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQ--MEQVRQTILL 234 + + ++ S ++ + Sbjct: 200 INMERARSKMTSTILNTSS-DALIAVSGSGLIQALNNQAYR 239 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 140/444 (31%), Positives = 216/444 (48%), Gaps = 16/444 (3%) Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 K PV+L+ + + + S V V+ + + L Sbjct: 13 KKTNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRM 72 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + N V+ A +D+ EA G + + D + R Sbjct: 73 PKVDGLAVLEQLVLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFD--IDDLAEKVRK 130 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 +L ++ ++ M+G S M++V + I A + VLI GE+GTGKEL Sbjct: 131 ALDYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELV 190 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 ++AIH + PFV VNC AI E LLE+ELFGYE+GAFTG+ + G F Sbjct: 191 SRAIHY--------NSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADER-KIGKF 241 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A+ GT+ LDEIG+M LQ ++LRVL+E + R+GG + +PVDVRV++AT+ +L+ + Sbjct: 242 ELANHGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLV 301 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 + G FR DL++RL+++++QLPPLRER DI LA+ F+K A S + + + A Sbjct: 302 KSGSFREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAA- 360 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEP-TPDLTPQFMQLLLPELARESAKTPAPRL 494 L+ YD+PGN+REL N++ R S + T D+ P + P L Sbjct: 361 ---LMAYDYPGNVRELENIIARAVALCSGKVLTLDVLPPQVVEPKPALRPLKEVLLEAER 417 Query: 495 LTPQQALEKFNGDKTAAANYLGIS 518 +QA+ D A A+ L + Sbjct: 418 RAFRQAVAVAGLDPQAVADLLQVD 441 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 444 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 142/450 (31%), Positives = 231/450 (51%), Gaps = 30/450 (6%) Query: 92 DVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKAN 151 ++ L++A I + ++ + + A F K N+ + + ++ + + Sbjct: 221 ELFNQLSEARNEA-VIFIDSFGKIVDANQKFSKWVNVEKAELKDKELTEVLPEMQRILS- 278 Query: 152 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNAL-- 209 + IT + + + +T + + + R + Sbjct: 279 ---CLETGKTITSEEIQLSKLPPHMQFVQMDVKPIESDKKITGLIIILMDNKTFRQRMSK 335 Query: 210 ---RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 + Y ++G+S +++ +Q + A SS+ V++ GE+GTGKEL AQAIH+ Sbjct: 336 ISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSGESGTGKELFAQAIHKA---- 391 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 ++ PFV++NC AI L+ +ELFGY EGAFTG+R+GG G FE A+ GT+FLD Sbjct: 392 ----SPRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGKFEYANTGTIFLD 447 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EIGEMPL +QT LLRVLEE+ V R+G + PVDVR+I AT+ NL + ++ G FR DL+Y Sbjct: 448 EIGEMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKMVKDGSFRLDLYY 507 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 R+++L + LPPLRER+ DI + + +L L +R+ + L+++ W G Sbjct: 508 RINVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKK----VREVAPETMAFLINHSWEG 563 Query: 447 NIRELRNMME-----RLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQAL 501 N+RELRN +E + L +E P + + + + ++ L Sbjct: 564 NLRELRNTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYEFEEKKKML 623 Query: 502 E---KFNGDKTAAANYLGISRTTFWRRLKS 528 KFNG+K+A A +GISR+T +R+LKS Sbjct: 624 ALMIKFNGNKSAVAEEIGISRSTLYRKLKS 653 >UniRef50_O85057 Limonene hydroxylase n=1 Tax=Geobacillus stearothermophilus RepID=LIHY_BACST Length = 543 Score = 444 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 137/319 (42%), Positives = 195/319 (61%), Gaps = 16/319 (5%) Query: 213 YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQG 272 Y G ++ +P E+ +T + ++S A VLI GETG+GKE+ A+ IH + Sbjct: 227 YRFGRVVTYNPSFEKELRTASIASQSDANVLILGETGSGKEVLARTIHEQ--------SP 278 Query: 273 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 332 +++ PFVA+N GAI L+ +ELFGY EGAFTG+R+GGR G FE+A GGTLFLDEIG+MP Sbjct: 279 RRNGPFVALNAGAIPRELIASELFGYVEGAFTGARKGGRPGKFEVADGGTLFLDEIGDMP 338 Query: 333 LPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ-QGRFRRDLFYRLSIL 391 L LQ LLRVLEE++V R+G H+ P++VRVI+AT+ NL+E++ +G FR DL+YRL++ Sbjct: 339 LELQVNLLRVLEERKVIRIGDHKERPINVRVIAATNRNLKEEIAYRGSFRSDLYYRLNVF 398 Query: 392 RLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIREL 451 + +PPLR+R DI L+ FLK ++ +L Y+WPGNIREL Sbjct: 399 TIHIPPLRDRKEDIETLSLQFLKNFHQHYC---GKGTCHLSNSALQLLQSYNWPGNIREL 455 Query: 452 RNMMERLALFLSVEP--TPDLTPQFMQLLLPELARESAKTPAP-RLLTPQQALEKFNGDK 508 RN++ER L EP P P+ +Q + S +QAL++ Sbjct: 456 RNVIERAFLLAIDEPEILPIHLPEEIQNANCAIPPSSVNNLKDVEKKMIEQALKESK-SL 514 Query: 509 TAAANYLGISRTTFWRRLK 527 T AA LGI+R+T +R++K Sbjct: 515 TEAAKKLGITRSTLYRKIK 533 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 444 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 203/370 (54%), Gaps = 28/370 (7%) Query: 164 DLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSP 223 ++ + + A + Q+ + + + + +++G SP Sbjct: 156 EMVTILTIAASLMAQARRIHQSIHEEKKRISEEKLYYKEELLKQ--------SEIIGYSP 207 Query: 224 QMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 283 +++V + I A SSA VLI GETGTGKEL A+AIH +K P++ +NC Sbjct: 208 PIKRVSEIIAKIAPSSATVLIRGETGTGKELIAKAIHNY--------SPRKEKPYIKLNC 259 Query: 284 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVL 343 AI E+LLE+ELFG+E+GAFT +R R G FE+A GGTLFLDE+G++ LPLQ ++LR+L Sbjct: 260 AAIPENLLESELFGHEKGAFTDARET-RKGRFELADGGTLFLDEVGDLSLPLQAKILRIL 318 Query: 344 EEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVA 403 +E+E RVGG + + VDVR+++AT+ +LEE ++ G FR DLFYRL+++ + PPLR+R Sbjct: 319 QEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGD 378 Query: 404 DILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLS 463 D++ L+ FL+ + +E +L HYDWPGNIREL N +ERL L Sbjct: 379 DVILLSRYFLERFCKRHAKEL-----HLTPKAEELLKHYDWPGNIRELENSIERLVLLAP 433 Query: 464 VEPTPD-----LTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGIS 518 E + + P + E+ + R +AL++ +G K AA LGI+ Sbjct: 434 SESIDEEVVLSVLPGRVHGYTKEVKTRADLEELERSAII-KALKECHGIKLQAAKKLGIT 492 Query: 519 RTTFWRRLKS 528 +++ Sbjct: 493 NRQIGYKIQK 502 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 148/409 (36%), Positives = 216/409 (52%), Gaps = 45/409 (11%) Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + +I +L+ + VV + ++ E V F +A + + + Sbjct: 260 GKAEIEQLQNTPSGMVVTNRVPIEINGEIM----------GVVATFKEAGRIQQTEQKIR 309 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 T L +Y +++ P+M ++ + YAR+ VLIE E+G GKEL AQ+IH Sbjct: 310 TK-LYSQGLYAKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCGKELFAQSIH 368 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + + PFVA+NC A+ LLE+ELFGY EGAFTG+R+ G+ GL E+AHG Sbjct: 369 QA--------SSRCRGPFVAINCSALPTQLLESELFGYVEGAFTGARKEGKPGLIELAHG 420 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIG+M L LQ RLLRVLEE++V R+G + +PVD+R+++AT+ L++ + +G+F Sbjct: 421 GTLFLDEIGDMELTLQARLLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQF 480 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DLF+RL++L L +PPLR R DI+PLAE FL + A++ +LL Sbjct: 481 RMDLFHRLNVLNLSIPPLRHRREDIIPLAEYFLAEFANKYGQR----PIELTAAAKDILL 536 Query: 441 HYDWPGNIRELRNMMERLALFL----------------------SVEPTPDLTPQFMQLL 478 Y WPGN+RELRN+MER++L S T +L M + Sbjct: 537 RYSWPGNVRELRNIMERISLVYEEAQDVSAILRDFLGNSDYCNNSDYSTLELAKTGMLAV 596 Query: 479 LPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 PE + L G+K+ AA LGI+R T R L+ Sbjct: 597 TPERFLLPQSIRDMKRQLAISTLAACGGNKSKAAKQLGITRATLDRLLR 645 Score = 84.0 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 69/164 (42%), Gaps = 7/164 (4%) Query: 45 GFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLT 104 G + +K +E II+ G +++ + +PV+ ++ +GYD+L+ ++ Sbjct: 33 GLLENGLICAQKALSEGFQVIISRGGTANLIRNHIGIPVVEVRVTGYDILRTFSEFIGTN 92 Query: 105 SSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQI------NELKANGTEAVVG 158 +IGVV Y+ + + + + L + + E ++ +L+ + VVG Sbjct: 93 KTIGVVGYRNVVEGCRSVSQMLGIPLREMLTLNNERPDWEVMRAYLQAQLERTPVDVVVG 152 Query: 159 AGLIT-DLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 L+ L E + + A V +A +A + ++ + Sbjct: 153 DALVVSKLLLEVREVRLIMSGAEAVCEAIEEAQRIIKVQDKEKK 196 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 133/414 (32%), Positives = 204/414 (49%), Gaps = 26/414 (6%) Query: 124 KTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV- 182 +L+L +T I + ++ A A +A G F Y A Sbjct: 50 AIVDLKLPGVDGLT---LLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFT 106 Query: 183 -RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 + + ++ + ++ S M+++ I A++ Sbjct: 107 NEELLLVIERFLKFRTLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVP 166 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VLI+GE+GTGKEL A AI + +K P++ +NC AI E+L E+ELFGYE+G Sbjct: 167 VLIQGESGTGKELIANAI--------QKQSLRKEKPYIKINCAAIPETLFESELFGYEKG 218 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ + G FE+A+GGT+F DEIG+MPL LQ +LLRV+E+ V R+GG +P+ ++V Sbjct: 219 AFTGATET-KKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINV 277 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 R I AT NL+E ++ +FR DLFYR++++ + +PPL+ER DI L E FLK+ Sbjct: 278 RCIYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYG 337 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFMQLLL 479 ++ LL YD+PGN+REL++ +ER L V L +F L Sbjct: 338 KQNIT----ISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLSS 393 Query: 480 PELARESAKTPAPRLLT------PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + + +AL++ KT AA LGISR W ++K Sbjct: 394 FQKKCFISNFSLKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIK 447 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 143/410 (34%), Positives = 216/410 (52%), Gaps = 52/410 (12%) Query: 131 DQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL 190 DQR +E DAR N ++G G+ LA E T+ + + Sbjct: 154 DQRDAFSEVDAR------LTNAITNILGIGISNILANE------------TIEKQLQEIE 195 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 + N + + L+ D++G S +M++ + A S + VL+ GETGT Sbjct: 196 RFRQKLQNENHYLQEQQGLQN--TFADIVGTSAEMQRRITILSRVAPSESTVLLLGETGT 253 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKE+ A+AIH A ++ + + VNC A+ L+E+ELFG+E+G+FTG+ + Sbjct: 254 GKEVFARAIH--------AGSPRRDNLMIKVNCAALPPHLIESELFGHEKGSFTGATQR- 304 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 R G FE+A TLFLDEIGE+PL Q++LLRVL+EKE+ R+GG + V+VR+++AT+ N Sbjct: 305 RIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAATNRN 364 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 LEE+++ GRFR DL+YRL + + +PPLRER DI LA FL+ A + + Sbjct: 365 LEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPSISAK 424 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTP 490 ++ L+HY+WPGN+REL ++MER L + TP ++ LP + ++K P Sbjct: 425 AMEG----LMHYEWPGNVRELEHLMERTLLLTT-------TPVIAKIDLPGVPVTASKDP 473 Query: 491 APRLLTPQQALEK---------FNGDKT---AAANYLGISRTTFWRRLKS 528 + P +EK NG AA L + TT R+K Sbjct: 474 DSTFILPLDLMEKEYILKVLKLCNGRIAGPNGAAAKLKLPSTTLNSRMKK 523 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 151/387 (39%), Positives = 210/387 (54%), Gaps = 33/387 (8%) Query: 147 ELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATR 206 E +G E V+ IT E AG A Q D+ R + R Sbjct: 259 ERLEDGRELVINYLPITIGGETAG--------AVATLQELRQFQDIE----RRTRQELAR 306 Query: 207 NALRTRYVLGDML-GQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFA 265 R+ ++ +P M V +A A +LI+GETG GKE A AIH Sbjct: 307 RGRLARHTFLELEETAAPAMRAVIDEARRFAAVDATILIQGETGVGKEYFAHAIH----- 361 Query: 266 RHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFL 325 A ++ PFVAVNC AI ++LE+ELFGY EGAFTG+++GG+ GLFE AHGGT+FL Sbjct: 362 ---AASPRRYGPFVAVNCAAIPATVLESELFGYAEGAFTGAKKGGKVGLFEQAHGGTIFL 418 Query: 326 DEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLF 385 DEIGEM LQ RLLRVL+E E+ R+G + +PVD+RVI+AT+ +L + GRFR DL+ Sbjct: 419 DEIGEMAEELQARLLRVLQEHEIYRIGDDRVIPVDIRVIAATNRDLRAMVAAGRFREDLY 478 Query: 386 YRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWP 445 YRL +L L++PPLR R DI F++ + + + A++ +L YDWP Sbjct: 479 YRLDVLALEVPPLRARKQDIPL----FVRKFIDEFNHKYRRAVQGIDDEGLALLAAYDWP 534 Query: 446 GNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL-----LTPQQA 500 GN+REL N+++RL + P +T ++ L R S + AP + + A Sbjct: 535 GNVRELHNVVDRLMALAAG---PVITATEVRQCLERRLRSSDRPAAPGMKAAEAAAIRDA 591 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 L + NG+K AA LGI R+T WR+L+ Sbjct: 592 LARANGNKQQAARLLGIGRSTLWRKLR 618 Score = 71.3 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 70/181 (38%), Gaps = 5/181 (2%) Query: 60 ERCDAIIAAGSNGAYLKSRL-SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPA 118 E +I+ G + + L VP++ +K +G+D+L+AL +A + +V QE + Sbjct: 47 EGARVLISRGVTCGMIAAALPQVPLVEVKFTGFDLLRALLEAQAAGGPVAIVDRQEVLAG 106 Query: 119 LVAFQKTFNL--RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFI 176 L A ++ + + + + R +++ G ++G + D AE G+ GI + Sbjct: 107 LAAIEEILGVPDKARKIAIDDYRQYRAGVDQAVRAGAACIIGNQAVVDEAEAYGLRGILL 166 Query: 177 YSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLG--QSPQMEQVRQTILL 234 S + + R +A R V ++ + + + + Sbjct: 167 RSGPEGIRHALELSRQMLTIQRMEEANARRIETIINSVDYGIIAVDNAGAVTALNREARR 226 Query: 235 Y 235 Sbjct: 227 L 227 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 141/464 (30%), Positives = 221/464 (47%), Gaps = 26/464 (5%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 L++ V+ S ++L+ T + +E + ++ L + + Sbjct: 2 KSLNILVVEDGQSQREMLRDFLLKEGHTVEEA-ASGEEAVQSIAGGAFDLVLLDYKMPGM 60 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 ++ L ++ A + A +A G Y + L Sbjct: 61 DGMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAE 120 Query: 197 LRH--NTHDATRNALRTR-YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 R ++ R L+ + ++ S +M + A S A VL++GE+GTGKE Sbjct: 121 RRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKE 180 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+ IH+ + + P + VNCGA+ ESL+E+ELFG+E+GAFTG+ R G Sbjct: 181 LLARLIHQ--------LSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGAT-SRRIG 231 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FE A GGTLFLDEIGE+ +P+Q +LLR L+E+E RVGG+ + DVR+ISAT+ +LE Sbjct: 232 RFEEADGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLET 291 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 +++ +FR DL+YRL+++ + +PPLRER DI L + FL+ A S Sbjct: 292 MVKEEKFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISG----ISS 347 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPR 493 + +L+ YD+PGN+REL N++ER + E F + L + + R Sbjct: 348 EARDLLMKYDYPGNVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGR 407 Query: 494 L---------LTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L Q A+EK +T AA LG+S +LK Sbjct: 408 LRGAIENLEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKK 451 >UniRef50_Q2RH79 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH79_MOOTA Length = 562 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 131/331 (39%), Positives = 189/331 (57%), Gaps = 17/331 (5%) Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 ++ + +LG SP M ++++ AR A VLI GE+GTGKEL AQAIHR Sbjct: 239 QQELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHR 298 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 +++ P + +NC AI E+LLEAELFGYEEGAFTG+ RGG+ G FE+A GG Sbjct: 299 A--------SPRRNEPLIKINCAAIPENLLEAELFGYEEGAFTGAARGGKPGKFELADGG 350 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDE+G++PL +Q +LLRVL+E+ RVGG + + VDVR+I+AT+ +L G+FR Sbjct: 351 TIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDLLALEAAGKFR 410 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL+++ L +PPLRER D+ L + ++ L+A + +R + + Sbjct: 411 LDLYYRLAVVTLTVPPLRERPGDLEILVAAIIR----RLNARYHQTVRGLDPEVQRLFSR 466 Query: 442 YDWPGNIRELRNMMERLALFLSVEP---TPDLTPQFMQLLLPELARESAKT--PAPRLLT 496 Y WPGN+REL N++E FL T P MQ + K+ Sbjct: 467 YSWPGNVRELENVLEHAFNFLDPGEEIITLKHLPATMQRTIGGGGGLKLKSAVATAEREV 526 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL G+K AA LGI + +++LK Sbjct: 527 ILKALAAAGGNKQEAARLLGIHPSGLYQKLK 557 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 138/428 (32%), Positives = 203/428 (47%), Gaps = 40/428 (9%) Query: 124 KTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 + L + DA QI + V D A I+ + Sbjct: 50 RILVADLVSLFARSG-DALQQIWQTDPEQVAIVYAQS---DAARTLPHDERLIFLPKPLN 105 Query: 184 QAFSDALDMTRMSLRHNTHDATRNALRTRYVL--GDMLGQSPQMEQVRQTILLYARSSAA 241 +++ M + + + ++G+S QM + + I A SSA Sbjct: 106 LDELESVVMRALEYQALKVRMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESSAT 165 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VLI+GE+GTGKELAA+AIH+ + S FV VNC AI + LLE+ELFG+ +G Sbjct: 166 VLIQGESGTGKELAARAIHQ--------LSSRSSKNFVPVNCAAIPDDLLESELFGHVKG 217 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 +FTG+ R G FE+A GTLFLDEIG+M LQ +LLRVL+ KE VG + VDV Sbjct: 218 SFTGAYAN-RIGRFEMADKGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDV 276 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 R+I+A++ NL+E + FR DL+YRLS++ + +PPLR+R DI L F + Sbjct: 277 RIIAASNKNLDEQVATRDFREDLYYRLSVIPITIPPLRDRREDIPLLINHF----QGQFN 332 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF--LSVEPTPDLTPQFM---- 475 ++ + + +L +YDWPGN+REL N++ER+ DL +++ Sbjct: 333 RDRRRLVKGFTREALEMLCNYDWPGNVRELENLVERMITMKESGFITVDDLPEKYLAPRT 392 Query: 476 ---------------QLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 + L PE ++ A QAL + G+K AA L + RT Sbjct: 393 VVAPPLSVSGSVPVGKELPPEGICLNSAVDAFENGLIMQALHRTGGNKKEAAALLNLKRT 452 Query: 521 TFWRRLKS 528 T +LK Sbjct: 453 TLIEKLKK 460 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 139/406 (34%), Positives = 213/406 (52%), Gaps = 32/406 (7%) Query: 135 YITEEDARGQINELKANGTE----AVVGAGLITDLAEEAGMTGIFIYSAATV-----RQA 185 + E D + LK + + G G I D A E+ G + + + + Sbjct: 56 AMPETDGLWLLRNLKEELPDCPVVFLTGRGTI-DAAVESIREGAYDFIVKPLDTARLKVC 114 Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 AL+ T L + D++ QS M +V + + A S A+V I Sbjct: 115 IDRALEKKETMREVQTLRRRLKQLGS----SDLIAQSVGMRKVIELVEKVAPSKASVSIS 170 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GE+GTGKE+ ++A+H ++ PF+A+NC +I +L+E+ELFG+E GAFTG Sbjct: 171 GESGTGKEVVSRAVHN--------LSLRRDKPFIAINCASIPATLIESELFGHERGAFTG 222 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + + R G+FE+AHGGTLFLDE+GE+P+ LQ +LLRVLEE ++ R+GG + VDVRV+ Sbjct: 223 ADQR-RPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLC 281 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ +L+++++ GRFR DL++RL++ ++ LPPLRER D+ L + F+ S Sbjct: 282 ATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVS 341 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPE--- 481 + ++ VL +YDWPGNIRELRN +ER + E T + P M PE Sbjct: 342 GVHPEAME----VLKNYDWPGNIRELRNAVERAVILCDGELITREHLPPDMAGKSPERHT 397 Query: 482 -LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 A +L++ +K A LG+S T + +L Sbjct: 398 FRLPFGLSLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYNKL 443 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 130/318 (40%), Positives = 180/318 (56%), Gaps = 18/318 (5%) Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 +LG P + + + + A S A VLI GETGTGK+L A+AIH G+ Sbjct: 264 GFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEA--------SGR 315 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 K PFVA+N GA+ L+ +ELFGY GAFTG+R G+ G FE A GGTLFLDEIG+MP+ Sbjct: 316 K-GPFVAINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQAQGGTLFLDEIGDMPM 374 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 +Q LLRVLEEK+V R+GGH+ +P+DVR+I+AT+ +L + +++ +FR DL++RL +L + Sbjct: 375 DIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRLRVLTI 434 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 L PLRER +DI L + F+ L + +L +YDWPGNIRELRN Sbjct: 435 HLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWP----LLGNYDWPGNIRELRN 490 Query: 454 MMERLALF-----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDK 508 + E +SV P + + S Q LE + G+ Sbjct: 491 VAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSLIELEKQEISQLLEHYGGNI 550 Query: 509 TAAANYLGISRTTFWRRL 526 T A LGI+R T +R+L Sbjct: 551 TKVAKALGIARNTLYRKL 568 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 135/421 (32%), Positives = 216/421 (51%), Gaps = 34/421 (8%) Query: 124 KTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 ++R+ + + A +I+++K N ++ A ++ A A G + Y Sbjct: 62 AILDIRMPEVDGLQ---AFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFN 118 Query: 184 QAFSDALDMTRMSLRHNTHDATRNALRTRY------VLGDMLGQSPQMEQVRQTILLYAR 237 + + ++ T + + G ++G+S ++++V + I A Sbjct: 119 LDEVKIIVSRAIRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVAN 178 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 S A VL+ GE+GTGK + A+AIH ++ PF+ VNCG+I E LLE+E+FG Sbjct: 179 SKATVLLTGESGTGKGMVAKAIHYA--------SDRREKPFIQVNCGSIPEGLLESEIFG 230 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 +E+GAFT + + G FE+A GGTLFLDEI EM LQ +LLRVL+EKE RVGG + Sbjct: 231 HEKGAFTSAFFQ-KPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTF 289 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 +VR+I+AT+ +L +++ + FR+DL+YRL+++ + LPPL ER DI+ LA+ FLK Sbjct: 290 HTNVRIIAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLK--- 346 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQ 476 S + +Y WPGNIREL N +E + + P+ P ++ Sbjct: 347 -RFSVEVGRNGMFFAPEVLDIFRNYSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIK 405 Query: 477 LLLPE------LARESAKTPAPRLLTPQ-----QALEKFNGDKTAAANYLGISRTTFWRR 525 + E L +S K LL + +A+E+ G++T AA L ISR + Sbjct: 406 VEDVEADGTIILGDDSFKPLREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYK 465 Query: 526 L 526 + Sbjct: 466 I 466 >UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTF4_9CLOT Length = 670 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 156/526 (29%), Positives = 244/526 (46%), Gaps = 74/526 (14%) Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKA------------------GKLTSS 106 + G++ R +P +++ + V AL A +L Sbjct: 153 FMGGGASLPNEAKRQGIPYTVVENTYESVSIALDAALQLLNVQKQEREKRKEYEIQLQKH 212 Query: 107 IGVVTYQETI---PALVAFQKTFNLRLDQRSYITEEDARGQINELKAN--------GTEA 155 ++ Y N+ + ++T I L E Sbjct: 213 QMLMNYTRDAIINVDARGMVSIMNMEARRMFHLTHSAVGRDIRRLLPELEFDELRRTPEQ 272 Query: 156 VVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDAT--RNALRTRY 213 VVG +I + + I I A + + + L +Y Sbjct: 273 VVGQ-IIRIQGQLLSVNKIPIVMGGQFEGAIYFFQSVHDIQKSEQRIRLQLHQKGLVAKY 331 Query: 214 VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGK 273 D+LG S +E+V+ YA++ +++L+ GETGTGKEL AQ+IH + Sbjct: 332 HFEDILGISDSLERVKLIARSYAQADSSILLTGETGTGKELFAQSIHNS--------SPR 383 Query: 274 KSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL 333 ++ PFVA+NC A+ + LL ++LFGYEEG+FTG+ +GG+ G+FE+AHGGT+FLDEIGE+P Sbjct: 384 RNGPFVAINCAALPKDLLSSQLFGYEEGSFTGAAKGGKPGIFELAHGGTIFLDEIGEIPE 443 Query: 334 PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRL 393 Q +LLRVL+EKEV R+ + +P+DVRVI AT+ NL ++++ RFR DLF+R+++L+L Sbjct: 444 ETQIQLLRVLQEKEVRRLSSDKVIPIDVRVICATNRNLALEVKERRFRMDLFFRINVLKL 503 Query: 394 QLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRN 453 ++PPLRER DI LA+ FL+ A +R + ++ Y WPGNIREL+ Sbjct: 504 EIPPLRERKEDIPLLADHFLEEYCRGGRL---AEVRARMHGLYPRMMEYSWPGNIRELQA 560 Query: 454 MMERLALFLS-------------------------------VEPTPDLTPQFMQLLLPEL 482 + ER+A+ L P + P+ + PE Sbjct: 561 VTERIAILLDQGFPMEIDAHMMMEEFGYLEGEEGGMGPEPGERPGAEEQPEPDRKTEPEE 620 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + R +AL+ + + AA LGISR+T WR ++ Sbjct: 621 SASGRPISECRKEDIIRALKNHHYRRQEAAQALGISRSTLWRLIRK 666 Score = 49.4 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 14/222 (6%) Query: 8 NDDKPVIWTVSVTR-LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAII 66 P I ++ ++ L +L R ++ D + + + + ++L + + Sbjct: 7 KAKVPEICLIAPSQSLADLTRRVAA--DRGLEVGIYVAVLDDGI-KLAEELMSRGARIFV 63 Query: 67 AAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTF 126 + L V I + D L+ L +V Y I L + Sbjct: 64 SRKGTAEVLARN-HFTVAKISTTLNDYLRHLDLLKGYQGKTVIVEYVSFINELKQLCRYL 122 Query: 127 NLR-LDQRSYITEEDARGQINELKANGTEAVVGAGLITD-LAEEAGMTGIFIYSA-ATVR 183 + Y + + + +G G A+ G+ + + +V Sbjct: 123 GVENTMILGYQNATEYEQCVKMALDSHATCFMGGGASLPNEAKRQGIPYTVVENTYESVS 182 Query: 184 QAFSDALDMTRMSLRHNTH------DATRNALRTRYVLGDML 219 A AL + + + ++ + Y ++ Sbjct: 183 IALDAALQLLNVQKQEREKRKEYEIQLQKHQMLMNYTRDAII 224 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 132/423 (31%), Positives = 218/423 (51%), Gaps = 41/423 (9%) Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 + + + E+ + ++K V G ++ + +G + + + + Sbjct: 167 EIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVL----DNSGEVKRVVTNVRDISELNML 222 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYV--------LGDMLGQSPQMEQVRQTILLYARSSA 240 ++ + + + L+ + + +SP M+ V L AR+ Sbjct: 223 RRELAEVKEKSKHYQRKIVELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDT 282 Query: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 VLI GE+GTGKE+ A+ IH +K F+ VNCGAI E+L+E+E FGYE Sbjct: 283 TVLIIGESGTGKEVIARFIH--------FNSLRKDKAFLPVNCGAIPENLMESEFFGYEP 334 Query: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 GAFTG+ + G+ G FE+A GGTLFLDE+GE+PL LQ +LLR L+ KE+ R+G +P+ VD Sbjct: 335 GAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVD 394 Query: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 VR+I+AT+ NL + +++G+FR DL+YRL+++ +++PPLR+R +I+P+A FL Sbjct: 395 VRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKY 454 Query: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 + ++ + +L Y WPGNIREL N++E + E + P + L Sbjct: 455 GSE-----KKFTREVLEILKEYKWPGNIRELENVIEHAYVVSQDEINVEDLPIHLDSLYG 509 Query: 481 ELA-----------RESAKTPAP----RLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 E RE+ + AL K+ G +T AA+ LG++++T R+ Sbjct: 510 EPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKY-GTETRAASVLGVNQSTISRK 568 Query: 526 LKS 528 +K Sbjct: 569 IKK 571 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 138/401 (34%), Positives = 203/401 (50%), Gaps = 26/401 (6%) Query: 140 DARGQINELKANGTEAVVGAGLI---TDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 +AR I G AV+ T E + G + + D Sbjct: 256 NARLAIAVTLPAGNLAVISFYSRNADTYTEELFTLLGRMENGIRQLLEQIQQKNDALSAR 315 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + + + + ++G+SP V +I + + + ++VLI GE+GTGKEL A Sbjct: 316 IVARKR-VEKPLIDNEVLFEGIVGRSPVFLSVLHSINMVSAAPSSVLILGESGTGKELIA 374 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 + IHR+ +K+ P + VNC A+ L+E+ELFG+E+GAFTG+ RAG FE Sbjct: 375 RCIHRQ--------SPRKNKPLITVNCAALPAELIESELFGHEKGAFTGAT-DKRAGKFE 425 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGT+FLDEIGE+P+ Q +LLRVL+EKE RVGG + + VDVRVI+AT+ NLE+++ Sbjct: 426 MADGGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVA 485 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +GRFR DL+YRL++ ++LP LRER DI LA+ F+ LS + L+A Sbjct: 486 EGRFRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKA-- 543 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKT------P 490 L YDWPGNIRE+ ++MER L + + M SA Sbjct: 544 --LRSYDWPGNIREMEHVMERSLLMTTGTILKQIMLPKMAAQPVGTTISSADGNRIKTLE 601 Query: 491 APRLLTPQQALEKFNGDKT---AAANYLGISRTTFWRRLKS 528 + Q L+ G AA LG+ +T +++ Sbjct: 602 EMEIEHILQVLKSCKGKVCGVGGAAELLGLPPSTLNSKIRK 642 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 133/390 (34%), Positives = 208/390 (53%), Gaps = 35/390 (8%) Query: 140 DARGQINELKANGT---EAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 D + E++ G V+ + A A G Y +++ + Sbjct: 59 DGLQLLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPF------SMETLKSL 112 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + + +++ +S +M ++ + + AR+ VL+ GE+G GKE+ A Sbjct: 113 VSRLIPEQ-----------DEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIA 161 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 + IH+ + + PFVA+NC AI E+LLEAELFG+E+GAFTG+ + G FE Sbjct: 162 RYIHKH--------SPRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATER-KPGKFE 212 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+ GT+ LDEI EM LQ +LLRV++EKE+ RVGG +P+P+DVR+I+ T+ +L E+++ Sbjct: 213 LANKGTILLDEISEMAYRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVK 272 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DLFYR+++ +++PPLRER DI+PLAE FLK +S F+ + + Sbjct: 273 KGNFREDLFYRINVFPIRIPPLRERSDDIIPLAEFFLKRLSNKMSKNFT-----ITEDMK 327 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLT 496 LL W GN+REL N + R A+ S + L + L E ++ K Sbjct: 328 KFLLKKSWQGNVRELENFIYRSAVL-SQDGILRLHEDEINLFEEEKPVKAGKLKDAEREL 386 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRL 526 AL+K G++T AA LGIS T ++ Sbjct: 387 IVDALKKTEGNRTKAAKILGISVRTLRNKI 416 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 148/477 (31%), Positives = 228/477 (47%), Gaps = 46/477 (9%) Query: 84 ILIKPSGYDVLQAL-AKAGKLTSSIGVVTYQET-IPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ ++ + L A+ + + E + L + + + D Sbjct: 8 ILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDGMDL 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT-----VRQAFSDALDMTRMS 196 + ++ A D A EA TG F Y VR AL ++ Sbjct: 68 LRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTRDLA 127 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 T D + R ++G+SP ++++ + A + VLI GE+GTGKEL A Sbjct: 128 SADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGKELVA 187 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H G++ PF+ VNC AI + L+E+ELFGYE GAFTG+ + G FE Sbjct: 188 RALHE--------NSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAV-ASKPGRFE 238 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGTLFLDEIGE+P +Q +LLRVL+E E RVGG + + VDVR+++AT+ +L+ ++ Sbjct: 239 LASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIA 298 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FR DLFYRL+++ + LP LR+R +DI L F+ A +A ++ + Sbjct: 299 AGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFV----AKFNARLKKSIESIEPEAL 354 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQ------------------- 476 L + WPGNIREL N++ER LF D P+ ++ Sbjct: 355 ERLASHAWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAAD 414 Query: 477 ----LLLPELARESAKTPAPRLL--TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P+ +E K +L ++AL++ +G+ T AA L ISR ++K Sbjct: 415 TSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMK 471 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 139/395 (35%), Positives = 214/395 (54%), Gaps = 33/395 (8%) Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 T E R + L+ G + A L+ D +G I + A +RQA + Sbjct: 284 TGEGYRDREILLENQGKKVFSSATLLLDD------SGNTIGAVAVLRQA------RDALK 331 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 R H + RY D++G+SP + + ++ + A S + +L+ GE+GTGKEL A Sbjct: 332 SRRAQHSSL-----PRYSFDDIIGESPAISEAKEWARIAANSGSTILLSGESGTGKELFA 386 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 Q+IH ++ PF+A+NC AI E+L+E+ELFGY EG FTG+++GG G FE Sbjct: 387 QSIHNV--------SSFRNGPFIAINCAAIPEALVESELFGYAEGTFTGAKKGGSPGKFE 438 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GTLFLDEIG+MPL +Q ++LRV++EK+++RVG + V++R+I++TH NL ++ Sbjct: 439 SADRGTLFLDEIGDMPLTVQAKVLRVIQEKKISRVGSSEERQVEIRIIASTHKNLRTEVL 498 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FR DLFYRL++L +Q+PPLR+R DI +A ++ A + G A Sbjct: 499 NGNFREDLFYRLNVLVVQVPPLRDRGGDIPLVACHLVEKISARMGKQRIV----GEDAFW 554 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT---PDLTPQFMQLLLPELAR-ESAKTPAP 492 L ++WPGN+REL N +E+ + LT ++ + P R E Sbjct: 555 GKLASHNWPGNVRELENAIEQAVVRSDDSGVLLARHLTFDVVESVAPTGGRAEIVSLTEM 614 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL ++G+ AA+ LGI R T +R+++ Sbjct: 615 EKQAITAALHLYDGNIQKAASKLGIGRNTLYRKIR 649 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 204/387 (52%), Gaps = 18/387 (4%) Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 RG+I + G VV I G G+ I+ + + +T Sbjct: 195 RGEIQRI--EGQNMVVHRIPIWQNHRVVGAVGMLIFEGVSELYEILQRARVFLSEESLST 252 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 +NA ++G+S ++ + AR+ A VL+ GETGTGKEL A+ IH+ Sbjct: 253 EPTKKNATSVERR---LIGRSEALQSCKCFARKVARTKATVLLTGETGTGKELFARLIHQ 309 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + + PFVA+NC A+ E+LLEAELFGYEEGAFTG+RRGG G FE A GG Sbjct: 310 --------MSNQANGPFVAINCAAMPETLLEAELFGYEEGAFTGARRGGAVGKFEQASGG 361 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDE GEM LQ +LLRVLE K+V RVG +PV D R+I+AT+ +L + + G+FR Sbjct: 362 TLFLDEAGEMSNALQAKLLRVLETKQVDRVGSCRPVQTDFRLIAATNADLNQLVADGKFR 421 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DL+YRL + L +PPLRER DI L +F+ ++ + + L Sbjct: 422 KDLYYRLVAITLNIPPLRERKEDIPYLISAFMDRFAQEYGLRH----KRFCEDALHAFLE 477 Query: 442 YDWPGNIRELRNMMER-LALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQA 500 YDWPGN+REL N ++ +A+ + T + P F++ + +QA Sbjct: 478 YDWPGNVRELANAIDYIMAIGEEEKVTSNTLPPFLRNHAAKKESLKTVARRSEKERIEQA 537 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 + NG+K AA LGI R T +R+LK Sbjct: 538 IVLANGNKAKAAKLLGIHRATLYRKLK 564 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 122/327 (37%), Positives = 183/327 (55%), Gaps = 32/327 (9%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++GQS Q++++ I +++ LI GE+GTGKEL A+ IH+ + + P Sbjct: 2 IIGQSIQIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQ--------KSSRAEKP 53 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 F+ VNC AI LLE+ELFG+E+GAFTG+ + R G FE+A+ GT+FLDEIG+MPL LQ Sbjct: 54 FIPVNCAAIPSELLESELFGHEKGAFTGA-QNCRYGRFELANEGTIFLDEIGDMPLHLQV 112 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 ++LRV++EK R+GG +P+ V+VR+I+AT+ +LE ++++GRFR DLF+RL+++ + +PP Sbjct: 113 KILRVIQEKTFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPP 172 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI L E F+ Q + L+Y WPGN+REL N++ER Sbjct: 173 LRERKEDIPLLCEYFINKFSHKFGYSL-----QIKPEVMQIFLNYTWPGNVRELENLIER 227 Query: 458 LALFLSVEPT-----------------PDLTPQFMQLLLPELARESAKTPAPRLLTPQQA 500 L + +L P + + + L A Sbjct: 228 LYVLNEGGNINIKDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKL-ILHA 286 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 L K+ AA YL I+RTT ++K Sbjct: 287 LNLHGWIKSRAAKYLNINRTTLIEKMK 313 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 137/424 (32%), Positives = 208/424 (49%), Gaps = 29/424 (6%) Query: 116 IPALVAFQKTFNLRLDQRSY----ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGM 171 +P A K L ++ T R Q + L+ G VV I + Sbjct: 160 VPTEEAIGKDAALIIENTRLPVVLKTGVPERSQAHRLQ--GQNLVVHRIPIWKDNKVVAA 217 Query: 172 TGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQT 231 GI +Y + D ++ + +H+ N + D+LG SP + ++ Sbjct: 218 AGILVYEGVSEIYQVIDQMEELDKT-KHSKFTKDPNKKNSLTRFEDLLGDSPCFTKTKKI 276 Query: 232 ILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 291 ++S A VLI GE+G GK++ AQAIH E F++VNC AI E+LL Sbjct: 277 ARKASQSKAPVLITGESGVGKDIVAQAIHNE--------SPITRGRFISVNCAAIPEALL 328 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+ELFGY GAFTG+ +GG+ G E+AH GTLFLDEIG+MPL +Q ++LRV++EK V RV Sbjct: 329 ESELFGYSSGAFTGAEKGGKPGKIELAHKGTLFLDEIGDMPLTMQAKILRVIQEKSVERV 388 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 G + +D R+I+AT+ ++++ + +G FR DL+YRL ++ + +P LRER DI + Sbjct: 389 GSNHQSNIDFRLITATNKDIKQMVHEGTFREDLYYRLYVIPIHIPSLRERAEDIPIIVSH 448 Query: 412 FLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF-----LSVEP 466 + + Q + W GNIREL N +ERL + ++++ Sbjct: 449 KIAELNNEYGDR-----KTIDQLVVQWMYTQPWKGNIRELINFLERLYVLSESQHMTLDN 503 Query: 467 TPDLTPQFMQLL----LPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 PD +L L + + ++ LE G+KT AA LGISR T Sbjct: 504 LPDDIDDKQRLSSYNFLANKKVAESLSEEEERDRIKETLEHVKGNKTKAAKLLGISRATL 563 Query: 523 WRRL 526 + +L Sbjct: 564 YNKL 567 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 192/356 (53%), Gaps = 25/356 (7%) Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 DMT + + + L Y LG+++G+S M++V + A S + VLI Sbjct: 119 IVETVTDMTELQKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVLI 178 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 +GE+GTGKEL A+AIH + PFV VNC A+ E+LLE+ELFG+ +GAFT Sbjct: 179 QGESGTGKELIARAIHY--------NSDQADQPFVTVNCSALTETLLESELFGHVKGAFT 230 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 G+ R RAG FE AH G++FLDEIGE+ +Q +LLRVL+E+EV RVG Q +D+RVI Sbjct: 231 GAVRD-RAGRFEEAHRGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVI 289 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 ATH +L E + QG FR+DL+YRL + + LPPLR+R D+ L F+ A Sbjct: 290 VATHRDLNELLAQGVFRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRV 349 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFM-QLLLPE 481 + + ++ ++ Y WPGN+REL N +E + S E DL + + PE Sbjct: 350 TGLAPEAMR----LVFEYHWPGNVRELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPE 405 Query: 482 LARESA---------KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ARE+ P LE +K A A LG+SRT W+ +K Sbjct: 406 RAREAGVPRTAGSRQHHEQPDREQLLALLEANQWNKAAVARQLGVSRTAVWKYMKK 461 >UniRef50_A6LV27 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridium RepID=A6LV27_CLOB8 Length = 568 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 129/392 (32%), Positives = 208/392 (53%), Gaps = 22/392 (5%) Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 G I E+K G + + I + G ++ + A S L + Sbjct: 186 GGIQEIK--GNKMIAMRVPIKKDGKVISAVGKVVFKDISDFHALSKKLLDLEKEVEFYKS 243 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 N +Y + +++G S ++ +V+ I A +++ VLI GE+GTGKE+ A +IH Sbjct: 244 KIAENK-TAKYSVENIIGHSNKIRKVKDLIGKVANTNSNVLINGESGTGKEMIAHSIHNS 302 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + PF+ +NC +I LLE+ELFGYEEGAFTG+++GG+ G FE+A+GG+ Sbjct: 303 --------SKRYLAPFIKINCASIPAELLESELFGYEEGAFTGAKKGGKKGKFELANGGS 354 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 +FLDEIG+M + +Q ++LRV++E+E+ +GG VDVR+I+AT+ NLEE +++G FR Sbjct: 355 IFLDEIGDMNINMQAKILRVIQEREIESIGGSGVKSVDVRIITATNKNLEELVKKGEFRE 414 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL+++++ PPLRER DI LA ++ + + + L +Y Sbjct: 415 DLYYRLNVVKIVSPPLRERKEDIPALAN----ALRIKIAKRLDVYVEGISKDAIECLGNY 470 Query: 443 DWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ---- 498 DWPGNIREL N++ER L + + R S K + + + Sbjct: 471 DWPGNIRELENVIERAINLLDSNIMIKTEHLSKRFTSAKYKRYSDKNEYLKTIVEEVEKE 530 Query: 499 ---QALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L + N +K A LGISR +++++ Sbjct: 531 VILECLNRNNWNKNKTAQILGISRAGLYKKIE 562 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 144/407 (35%), Positives = 206/407 (50%), Gaps = 25/407 (6%) Query: 132 QRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR---QAFSD 188 Q + + + Q + +V + A EA G + Y + Sbjct: 58 QMPHFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTV 117 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 LR + R +++G+SP ++++++ I A S VLI GET Sbjct: 118 QRATEHARLRQENRRLQQQVAGCRG--DELVGESPPLKKLKELIAQVAPFSTTVLINGET 175 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKELAA+ IH+ G+ PF+A+NCGA+ E+LLE+ELFG+ +GAFTG+ + Sbjct: 176 GTGKELAAKLIHKW--------SGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQ 227 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 + GLFE GTLFLDEI M L Q +LLRVL+E +VGG QP DVRVI+A+ Sbjct: 228 D-KPGLFETVDQGTLFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASS 286 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 L E + G FRRDLFYRL+++ L+LPPLR+R DI LA FL A +A + + Sbjct: 287 RPLSEGVAAGSFRRDLFYRLNVVSLELPPLRQRREDIPLLAHHFL----AKYNAKYDKQV 342 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP--TPDLTP-----QFMQLLLPE 481 + T LL + WPGN+REL N +ER LF + L P + +L Sbjct: 343 QTIPAPVITRLLDHSWPGNVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTA 402 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +S + +AL++ NG + A LGIS + WR++K Sbjct: 403 DDAKSLTMASMEKKLIIKALQRANGHRGKTAELLGISPASLWRKIKK 449 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 154/472 (32%), Positives = 235/472 (49%), Gaps = 34/472 (7%) Query: 78 RLSVPVILIKP-SGYDVLQ---ALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQR 133 RLS P+ I +D ++ A+A + + V E I A + + Sbjct: 23 RLSPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRM 82 Query: 134 SYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIY-----SAATVRQAFSD 188 + + ++ EL + T VV A +A EA G + S +R Sbjct: 83 VPVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEK 142 Query: 189 ALDMTRMSLRHNTHDATRNALRT---RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 ++++ R T A AL R ++G S M +V + A + A VL+ Sbjct: 143 SIEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVL 202 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GE+GTGKEL A+AIH ++ PFV+++C AI E LLE+ELFG+E+GAFTG Sbjct: 203 GESGTGKELVARAIHDA--------SPRREQPFVSISCAAIPEGLLESELFGHEKGAFTG 254 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + R + G FE+A+GGTLFLDE+GE+P +Q +LLRVL+E++ RVGG + V VDVRV+S Sbjct: 255 AIRR-KLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVS 313 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 AT+ NL + ++ GRFR DL+YRL+++ + LPPLR+R D+ LA F+ +S + Sbjct: 314 ATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVT 373 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELAR 484 + L+ +L + WPGN+REL N++E+ +F E P P+ ++ P + Sbjct: 374 GLAPEALE----LLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSL 429 Query: 485 ESAKTPAP--------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 A EK G K A LGI + + +L+ Sbjct: 430 PVPSGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEK 481 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 134/401 (33%), Positives = 206/401 (51%), Gaps = 25/401 (6%) Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 I + + I+ K TE + G A I ++ + S ++++R+ Sbjct: 166 IPWTNLQQAIDRGKTFSTEVLSPDG----QALRLVFLPIMRHNRSLGVIVKSSQVELSRI 221 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + + RY + +++G + + + + ARS + VLI GE+GTGKE+ Sbjct: 222 NEWEQLLEQYQQG-TARYSINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIF 280 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A AIH ++ FV VNC A+ E+LLE+ELFGY EGAFTG+ + G+ G F Sbjct: 281 AHAIHN--------MSPRRKGSFVKVNCAAVPETLLESELFGYNEGAFTGALKEGKPGKF 332 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A+ GT+FLDEI +M L +Q +LLRVL+EKEV R+G V++RVI+AT+ NL E + Sbjct: 333 ELANHGTIFLDEIADMSLSMQAKLLRVLQEKEVERIGSLSSTKVNIRVIAATNQNLAELV 392 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 + +FR DLFYRL+++ L L PLR+RV DI L+ L L + +Q+ Sbjct: 393 SENKFREDLFYRLNVIVLNLLPLRQRVDDIPLLSHHLLHRLNQELGTRVEKINPEVIQS- 451 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPR 493 YDWPGNIREL N +ER F D+ +Q + + + Sbjct: 452 ---FCSYDWPGNIRELENTIERAVNFCEGNTITINDIPDNIIQRKNHYSSTTGSHSSLDN 508 Query: 494 LL------TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +L ++ L+ G+K+ AA L I R+ +R+L Sbjct: 509 ILGKQEKALIEEVLKNCGGNKSKAAKTLNIHRSVLYRKLHK 549 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 150/431 (34%), Positives = 223/431 (51%), Gaps = 30/431 (6%) Query: 114 ETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTG 173 E + + +Q + + + ++N++ + V+ A + A EA G Sbjct: 59 EALEKVRGWQPAIVVTDLKMPRMDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIG 118 Query: 174 IFIYSAATV--RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQT 231 F Y V + + +++R ATR LR+ LG M+G S M+ V Sbjct: 119 AFDYLQKPVDSVRLRTILSNVSRQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSL 178 Query: 232 ILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 291 I A ++ +VLI GE+GTGKEL A+ +H +K+ PFVAVNC AI E+L+ Sbjct: 179 IERVAPTNVSVLITGESGTGKELVAKTLHE--------LSPRKNKPFVAVNCAAIPETLI 230 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+E+FG+E+GAFTG+ RAG FE+A GTL LDEIGEMP+ Q +LLRVLE++ R+ Sbjct: 231 ESEIFGHEKGAFTGAIER-RAGCFELAEEGTLLLDEIGEMPIGTQAKLLRVLEDRRYRRL 289 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 G P+DVRV++AT+ N ++ + G R DL+YRL++ + +PPLRE DI +A+ Sbjct: 290 GSKVETPIDVRVLAATNKNPDQAVADGELRGDLYYRLNVFNIHMPPLREHKEDIPAIAQR 349 Query: 412 FLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE--PTPD 469 + A +++ A+ + LL YDWPGN+RELRN MER + + + Sbjct: 350 MI----ADMTSKHDRAIEGMDDEMQARLLSYDWPGNVRELRNTMERAVILCTGDRLQAQH 405 Query: 470 LTPQFMQLLLPELARESAKTPA-------------PRLLTPQQALEKFNGDKTAAANYLG 516 L P F + A +A+ PA L + LE + +KT AA LG Sbjct: 406 LPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVDEAERLLILKTLESTHNNKTRAAEILG 465 Query: 517 ISRTTFWRRLK 527 IS T +LK Sbjct: 466 ISLKTLHNKLK 476 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 132/432 (30%), Positives = 219/432 (50%), Gaps = 31/432 (7%) Query: 114 ETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTG 173 + + + Q + +I E+K +V A +A EA G Sbjct: 44 DVLQKIHTLQPALIFLDINMPQLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKG 103 Query: 174 IFIYSAAT--VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQT 231 + Y A + + + + R + G++LGQS M++V Sbjct: 104 AYDYIAKPYEMEELRIITRNALEKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDR 163 Query: 232 ILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 291 I + VL++GE+G+GKELAA IHR R +K+ PF+ +NC A+ E+L+ Sbjct: 164 IEKVVTADVTVLLQGESGSGKELAAHEIHR--------RSKRKNGPFIVMNCAAVPETLI 215 Query: 292 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 351 E+ELFG+E G+FTG+ R G FE+A+ GT+ LDEIG+M L Q++LLRVL+E++ R+ Sbjct: 216 ESELFGHERGSFTGATER-RMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERL 274 Query: 352 GGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAES 411 GG + + VDVR+ISATH +LEE++++GRFR DL+YR++++ +++PPLR+R DI L Sbjct: 275 GGTETLAVDVRIISATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNR 334 Query: 412 FLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLT 471 F++ S + + L Y+WPGNIR+L+N +E + + + D++ Sbjct: 335 FIQ----HFSKKHYKNVVSISNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNND-VLDIS 389 Query: 472 PQFMQLLLPELARESAK--------TPAPRLLT-------PQQALEKFNGDKTAAANYLG 516 ++ E +S K A ++L + LE+ G+ + A L Sbjct: 390 DLSEDIIREEKTPDSTKNVHYHLSFREAKKILIENFEKDFISKKLEECGGNISHTAEALD 449 Query: 517 ISRTTFWRRLKS 528 + R +++K Sbjct: 450 MHRQNLQQKIKD 461 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 145/442 (32%), Positives = 209/442 (47%), Gaps = 33/442 (7%) Query: 107 IGVVTYQETIPALVAFQK---TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLIT 163 I V T + AL ++ + + + G+I + V+ A Sbjct: 27 IQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAYSTV 86 Query: 164 DLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR--HNTHDATRNALRTRYVLGDMLGQ 221 A ++ G + Y A D + R + R L + ++G Sbjct: 87 KNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELAEHQQIDSLVGD 146 Query: 222 SPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 281 SP +V Q + S+A +L+ GE+GTGKE+ A+AIH+ + PFVAV Sbjct: 147 SPAFRRVLQAVDSVRESNATILLTGESGTGKEMVARAIHKHG--------NRADKPFVAV 198 Query: 282 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 341 NC AI E LLE+E+FG+ +GAFTG+ R G F+ A GTLFLDE+G+MPL LQ ++LR Sbjct: 199 NCAAIPEGLLESEMFGHRKGAFTGAV-ADRVGRFQQADKGTLFLDEVGDMPLALQAKILR 257 Query: 342 VLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRER 401 L+E+ + VG + VDVRVI+AT+ NL E + FR DL+YRL++ + LP LRER Sbjct: 258 ALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRER 317 Query: 402 VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF 461 V DI LA F A S + LQA + Y WPGNIREL+N +ER + Sbjct: 318 VEDIALLARHFAHSLGATAGKRISGFSPEALQA----MASYAWPGNIRELQNCVERATIV 373 Query: 462 LSVEPTPD-LTPQFMQLLLPELARESAKT--------------PAPRLLTPQQALEKFNG 506 + + + P ++ + SA AL++ NG Sbjct: 374 ATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQSNG 433 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 + AAA +GIS +FW RLK Sbjct: 434 VQAAAAQLIGISERSFWYRLKK 455 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 139/404 (34%), Positives = 209/404 (51%), Gaps = 33/404 (8%) Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 G I + + I + G G ++ +A D + L + Sbjct: 187 GHIQRISNRNI--IATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLSYYQT 244 Query: 203 DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHRE 262 + R R ++G+S +M++V+ L ++S + VLI GE+GTGKEL A A+HR Sbjct: 245 ELQRLQ-EGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRA 303 Query: 263 YFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGT 322 + S F+ +NC AI LLEAELFGYEEGAFTG+++GG+ G E+A GT Sbjct: 304 --------SPRASGTFIRLNCAAIPRDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGT 355 Query: 323 LFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRR 382 LFLDEIG+M L +Q +LLRVL+EKE+ R+GG + VDVR I+ATH NL E +Q+G FR Sbjct: 356 LFLDEIGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAATHRNLREMVQRGEFRE 415 Query: 383 DLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHY 442 DL+YRL++ + +PPLRER D++ + E +K L+ + + + + + + Sbjct: 416 DLYYRLNVFEIAIPPLRERKEDMIHITEFLIK----KLNGELGSNVISFDERVREIFMEH 471 Query: 443 DWPGNIRELRNMMERL---------------ALFLSVEPTPDLTPQFMQLLLPELARE-- 485 DWPGNIREL N++ER A + +L + + E Sbjct: 472 DWPGNIRELENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYS 531 Query: 486 -SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 A+ + +ALEK G+ AA LGI R + +R+++ Sbjct: 532 LQAEVESAEKRAITRALEKTAGNIKEAARLLGIHRASLYRKIEK 575 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 147/422 (34%), Positives = 220/422 (52%), Gaps = 40/422 (9%) Query: 118 ALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIY 177 AF+ N R+ E + G + ++ NG I + G Sbjct: 241 GKDAFETIPNTRMHNVLESGEAEI-GVLQDI--NGGTIATNRIPIEVDGKRIG------- 290 Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 V F D + ++ + + +Y D+L + M ++++ LYA+ Sbjct: 291 ----VVSTFEDITKIQQLEQKIRER-IYKKGFVAKYFFEDILTANESMIELKKIADLYAK 345 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 + A +LI+GE+GTGKEL AQ+IH + + PFVAVNC AI ++LLE+ELFG Sbjct: 346 TDAEILIQGESGTGKELFAQSIHNA--------STRSNGPFVAVNCAAIPDNLLESELFG 397 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE GAFTG+++ G+ GLFE+AH GT+FLDEIGE+ LQ RLLRV++EKE+ RVGG + + Sbjct: 398 YEGGAFTGAKKEGKQGLFELAHNGTIFLDEIGEISKGLQARLLRVIQEKEIMRVGGDKVI 457 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 P+D+R++SAT+ NLE+ ++ G FR+DL+YRL++ + LPPLRER DI +A LK Sbjct: 458 PIDIRIVSATNQNLEKQIETGEFRQDLYYRLNVFNIILPPLRERKEDISLIANKLLKKFA 517 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLAL-------------FLSV 464 F+ +++ +L+ YDWPGNIRE N++ERLAL V Sbjct: 518 ENYDIDFNKVIKEINP----LLIEYDWPGNIREFNNIIERLALVAVQTKSHNWAETLRKV 573 Query: 465 EPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWR 524 T + + + + + L K++ DK L I R TFWR Sbjct: 574 MHTVEAMDEHIVVKVNLKNGLKDAVKEFEKYIINSMLLKYDQDKDKVIKELKIGRATFWR 633 Query: 525 RL 526 ++ Sbjct: 634 KI 635 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 24/246 (9%) Query: 22 LFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSV 81 + ELF+ I+ + + A+I L I KL N + D ++ G Y+K + + Sbjct: 20 MGELFKSITEKSNVKAHIEVASLN---EAANIASKLQN-KVDVFLSRGGTADYIKKAVDI 75 Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 PV+ I + +DVL+++ A ++TS + V TY +TI + + ++++ + + EED Sbjct: 76 PVVAIPVTAFDVLKSIHYAKEITSEVSVFTYGKTIFGIKNIEDILDVKIYEYIFKNEEDI 135 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFI-YSAATVRQAFSDALDMTRMSLRHN 200 +NE+K+ G + VVG A++ G+ G+ + ++Q+ +AL + + Sbjct: 136 DQAMNEIKSKGIKVVVGGMPAVLTAQKYGLRGVLVECGEEAIQQSLQEALHIAEVRKIEA 195 Query: 201 THDATRNALRTRYVLGDMLGQ--------SPQMEQVRQT-ILLYARSSA----------A 241 A + G ++ +P E++ A Sbjct: 196 ARSARLKVILDSITQGVIVTNEHNKIVLYNPAAEKIFDLSSKKVLGKDAFETIPNTRMHN 255 Query: 242 VLIEGE 247 VL GE Sbjct: 256 VLESGE 261 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 131/404 (32%), Positives = 215/404 (53%), Gaps = 27/404 (6%) Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 + + ++K T V G T + ++ G + + + V + ++ ++ Sbjct: 302 MRVLENRKGESLVQKVKTGKTVMVTG----TPIFDDKGEISLVVTNVRDVTELYNLQNEL 357 Query: 193 TRMSLRHNTHDATRNALRTRYVLG-DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 RM + ++ LR ++ +S +M++V + + AR A VL++GE+G G Sbjct: 358 GRMEVLRTWYENELEQLRESAGAAPSVVIRSKKMKEVHELAMRLARVDATVLVQGESGVG 417 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KE+ A IH +K PFV ++C AI E LLE+ELFGYE GAFTG++ G+ Sbjct: 418 KEIFADLIH--------TNSPRKDKPFVKISCAAIPEQLLESELFGYEAGAFTGAKAKGK 469 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 AG+FE A GGT+FLDEIGEMPL LQ +LLRVL++K++ RVG + + VD+R+++AT+ +L Sbjct: 470 AGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQDKKIMRVGANHSMDVDIRILAATNRDL 529 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 + + +G FR DL++RL+++ + +PPLRER I+ A FL+ +Q Sbjct: 530 SQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEAIVNFAYHFLEKYNRKYG-----FAKQI 584 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARES---- 486 +L YDWPGN+REL N +ER+ + + P P+ +++ + Sbjct: 585 APDVLDILYDYDWPGNVRELENTVERMVVVTKGDVIEPADLPEKLRIAPKSGLAHALGGG 644 Query: 487 ---AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + QQALE +G A LG++++T R+L+ Sbjct: 645 SLKSALEGLEREILQQALE-THGSTHKVAKALGVNQSTVVRKLQ 687 >UniRef50_A8MEE7 Putative sigma54 specific transcriptional regulator n=2 Tax=Clostridiaceae RepID=A8MEE7_ALKOO Length = 622 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 158/495 (31%), Positives = 243/495 (49%), Gaps = 47/495 (9%) Query: 63 DAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAF 122 + +I G L + + + I S + + + A ++ ++ Y T+ L Sbjct: 145 EVVIVGGGIPCSLARKWGMDNVFINASKESIYEVMGHAKEVIDNLYEQKYNNTV--LKTI 202 Query: 123 QKTFNLRLDQRSYITEEDAR-GQINELKANGTEAVVGAGLI----------------TDL 165 + + +Y + + EL E ++G L D+ Sbjct: 203 LDEVHDAVIVMNYEGKVRLYNERAMELLKKDREEIIGGNLSEVLPELNFIKDAFERKIDI 262 Query: 166 AEEAGMTG-----------IFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYV 214 + + + + F D ++ + + H+ + L +Y Sbjct: 263 SNKIMTIKNITITVNTSILVMDGKTEGILCTFQDISNLQSLEKKIR-HELNKKGLIAKYT 321 Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 D++G S ME+V +S V+I GE+GTGKE+ AQ+IH + Sbjct: 322 FDDVVGFSHIMEEVVGKAKKIGQSDNTVIIYGESGTGKEIFAQSIHN--------ISKRS 373 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFVA+NC AI+E+LLE+ELFGYEEG+FTG+R+GG+ GLFEIAHGGT+FLDEI + Sbjct: 374 KEPFVAINCAAISENLLESELFGYEEGSFTGARKGGKPGLFEIAHGGTIFLDEINSISYS 433 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 LQ +LLRVL+EKE R+G +P+++R+I+AT+ L+ +++GRFR+DLFYRL+IL L Sbjct: 434 LQGKLLRVLQEKETMRIGSDYVIPLNIRIIAATNEELKTMVEEGRFRKDLFYRLNILELH 493 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 +PPLRER DILPL + F+ LS + A E LL Y WPGN RELRN+ Sbjct: 494 IPPLRERKEDILPLFKYFMGDIAKDLSYEVPS-------AIEEKLLAYRWPGNARELRNI 546 Query: 455 MERLALFLSVE-PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAAN 513 ER +F ++ + ++ + + + + L KT AN Sbjct: 547 AERYIIFKEIDIDSKEIHKNPSNIENDSICINLREINRYVEEKVIEMLVNQGMTKTEIAN 606 Query: 514 YLGISRTTFWRRLKS 528 LGISRT W+++KS Sbjct: 607 ILGISRTALWKKIKS 621 Score = 68.6 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 7/192 (3%) Query: 20 TRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRL 79 +R+ ELFRD I + I L + AIIA + ++ Sbjct: 16 SRIIELFRDDVQR--GKIMIDVLDSDTIDEQGRI---LEGKGARAIIARSGGYKHTVGKV 70 Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEE 139 ++PVI + + D++QA+ A K I +V +++ N + + +++ Sbjct: 71 NIPVIHLNVTTPDIIQAIVTAKKYNKDIVLVISDLDYFDYDSWKDLMNANIILERFHSKD 130 Query: 140 DARGQINELKA-NGTEAVVGAGLITDLAEEAGMTGIFIY-SAATVRQAFSDALDMTRMSL 197 + ++ + K +VG G+ LA + GM +FI S ++ + A ++ Sbjct: 131 EIYERVLKYKDIKKEVVIVGGGIPCSLARKWGMDNVFINASKESIYEVMGHAKEVIDNLY 190 Query: 198 RHNTHDATRNAL 209 ++ + Sbjct: 191 EQKYNNTVLKTI 202 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 134/380 (35%), Positives = 216/380 (56%), Gaps = 19/380 (5%) Query: 155 AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYV 214 VV +I + G G +++ + L + L + R + +Y Sbjct: 101 IVVRIPIINNEGNVIGAIGKSLFTDIPSGKLLFTKLQVLEKELAFYKEE-IRKVYKAKYS 159 Query: 215 LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKK 274 +++G+S ++++++ A S++ +LI GE+GTGKEL AQAIH + Sbjct: 160 CKNLIGESESVKEIKKLARKVASSNSTILITGESGTGKELLAQAIHNAGC--------RN 211 Query: 275 SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP 334 PFV VNC A+ E+LLE ELFGY++GAFTG+++GG+ G FE+A GGT+FLDEIGE+PL Sbjct: 212 QRPFVRVNCAAVPENLLETELFGYDDGAFTGAKKGGKPGKFELAQGGTIFLDEIGEIPLT 271 Query: 335 LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQ 394 +Q++LL VL+E+E+ RVGG + VP+DVRVISAT+ NLE+ ++ G FR DL+YRL+++ + Sbjct: 272 MQSKLLAVLQERELERVGGIKTVPLDVRVISATNRNLEDMVKNGTFREDLYYRLNVINFR 331 Query: 395 LPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNM 454 LP LRER DI L L+ + + + + +L Y WPGN+R+L N Sbjct: 332 LPSLRERSEDIPLLVNYL----THKLNKKLNCHVEGYTEQAMQLLTKYHWPGNVRQLENA 387 Query: 455 MERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQ-----ALEKFNGDK 508 +ER+ F + + P +++ + + K+ A + ++ AL+K +G++ Sbjct: 388 LERMFSFTDDKILSTEHMPFLKKIVNVNSSEVNTKSLAETIAETEKKMILDALQKVDGNR 447 Query: 509 TAAANYLGISRTTFWRRLKS 528 AA L I + +R++K Sbjct: 448 NKAAKLLDIHLSVLYRKIKK 467 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 147/464 (31%), Positives = 231/464 (49%), Gaps = 33/464 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTS-SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEE--D 140 IL+ D L +A + + + V + K F+L L + Sbjct: 7 ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGK-FDLSLLDVRLPDGNGIE 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGI--FIYSAATVRQAFSDALDMTRMSLR 198 + + ++ D A +A G F+ + + ++ + Sbjct: 66 LMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKTRQI 125 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + R +R++ ++GQ P ++++ +T+ L A S + VLI GE+G GKE+ A+A Sbjct: 126 KADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +H+ + P V++NCGAI E LLE+ELFG+ +GAFTG+ R R G FEIA Sbjct: 186 LHKSG--------SRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRA-RPGRFEIA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 +GGT+FLDEIG+M LQ +LLRVL+E+ VG Q + VDVRVI+ATH +LE ++ G Sbjct: 237 NGGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL+YRL+++ L LPPLRER DIL L + F+ + A + + + Sbjct: 297 RFREDLYYRLNVIPLTLPPLRERGDDILLLTDHFI----TRFNQQKKADITGVSDEVKRI 352 Query: 439 LLHYDWPGNIRELRNMMERLALF-----LSVEPTPD---------LTPQFMQLLLPELAR 484 +L+Y WPGN+REL+N++ER+ + +E P L M + E Sbjct: 353 ILNYQWPGNVRELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECID 412 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + AL++F +K AAN+L ++RTT ++K Sbjct: 413 LKSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKK 456 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 142/391 (36%), Positives = 206/391 (52%), Gaps = 19/391 (4%) Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 DA L+ G +++ D + G+ D + + Sbjct: 263 DAGTIDVLLQPQGA-SLLTMPFCNDRELQFMPDGVQSIPCLISLMPAPDGGRVLSLRENQ 321 Query: 200 NTHDATRN--ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 TR + Y + G +P+++Q Q +R+ + VL+ GE+GTGKEL AQ Sbjct: 322 RIRAITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDSTVLLTGESGTGKELFAQ 381 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH ++ F+A+NCGA+ L+++ELFGY +GAFTGSRRGG G FE+ Sbjct: 382 AIHNA--------SPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSRRGGSPGKFEL 433 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDEIGEMPL QT LLRVL+E EV R+G P+ V+VR+I+ATHCNL + +++ Sbjct: 434 ADGGTLFLDEIGEMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAATHCNLLDAVEK 493 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G FRRDL+YRL+++ L +PPLRER DI L +F+ A L Q + Sbjct: 494 GAFRRDLYYRLNVVSLAIPPLRERQEDIPGLVNTFILALCARLKR----IAPQVSPEAMR 549 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPRLL 495 L + WPGN+REL N++ER+ DL +Q P + S + + + Sbjct: 550 CLQAWHWPGNVRELENLVERMVNLCEGLEIDRQDLPDDMVQRQQPPVQLPSLQENERQHV 609 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 Q + + +G+ +A LGISRT + +L Sbjct: 610 L--QVVAEQHGNLRQSAQLLGISRTALYNKL 638 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 136/373 (36%), Positives = 198/373 (53%), Gaps = 44/373 (11%) Query: 187 SDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEG 246 + + + L ++ A R+ G + G SP + V +T+ A S + VL+ G Sbjct: 672 RRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSPAIRSVMETVRKVANSESTVLVRG 731 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 E+GTGKEL AQA+H + P V VNC A++ SLLE+ELFG+ +GAFTG+ Sbjct: 732 ESGTGKELLAQAVHE--------NSSRHEKPLVRVNCAALSPSLLESELFGHVKGAFTGA 783 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 R G FE+A+GGTLFLDEIG++ L Q +LLRVL+E+ RVGG + + VDVR+I+A Sbjct: 784 HED-RVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRLITA 842 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 TH NLE+ + +G FR DL+YRL+++ + LPPLRER DI LA FLK + L S Sbjct: 843 THQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLKRTANRLGKRISH 902 Query: 427 ALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT------PDLTPQFMQLLLP 480 ++A L WPGNIR+L N++ER + E DL Q +L Sbjct: 903 IDPDAIEA----LERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADLLEQKKRLPAR 958 Query: 481 ELARESAKTPAPRLLTPQQ-------------------------ALEKFNGDKTAAANYL 515 ++ ++ R + + AL + +G+K AA L Sbjct: 959 VFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECDGNKAQAARLL 1018 Query: 516 GISRTTFWRRLKS 528 G+ R+T++ +LK Sbjct: 1019 GMPRSTYYSKLKK 1031 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 159/479 (33%), Positives = 238/479 (49%), Gaps = 49/479 (10%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 + I + L +A + + ++++ L+A +KT L ++ + D Sbjct: 6 VWIVDDDSAIRWVLERALN-NAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDNDGLT 64 Query: 144 QINELKANGTE---AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + LK + + ++ A + A A G F Y + L ++ N Sbjct: 65 LLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALNYYRN 124 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 TR+ + ++G++P M++V + I +RSS +VLI GE+GTGKEL A A+H Sbjct: 125 QQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIADALH 184 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 R K + PF+A+N AI + L+E+ELFG+E+GAFTG+ + R G FE AHG Sbjct: 185 RH--------SPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQ-VRQGRFEQAHG 235 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 G+LFLDEIG+MPL +QTRLLRVL E + RVGG+ P+ VDVR+I+ATH LE+ +Q+G+F Sbjct: 236 GSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKF 295 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DLF+RL+++R+ LPPLRER DI LA FL + L + +ET+L+ Sbjct: 296 REDLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVE----SKILAPQTETILM 351 Query: 441 HYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQL---------------------L 478 W GN+R+L N+ L + S + P P +Q Sbjct: 352 SLPWSGNVRQLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDP 411 Query: 479 LPELARESAKTPAPRLLTP----------QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + + + LL + AL G K AA LG R T R+LK Sbjct: 412 LANWTKTALENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLK 470 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 131/423 (30%), Positives = 209/423 (49%), Gaps = 26/423 (6%) Query: 119 LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS 178 L + + + +T ++ + ++ A + A E G F Y Sbjct: 44 LDESEVDVVVTDMKMPKVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYI 103 Query: 179 AATV--RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYA 236 + + ++ H + + + RY + ++G+S + V + A Sbjct: 104 TKPFSNDELLLSIHNAVELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAA 163 Query: 237 RSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELF 296 S + VLI GE+GTGKEL A+AIH +K +PFV+VNC A+ +LE+ELF Sbjct: 164 PSRSTVLITGESGTGKELIARAIHYT--------SPRKDNPFVSVNCMALNPGVLESELF 215 Query: 297 GYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQP 356 G+E+G+FTG+ R G FE A GGTLFLDEI E+ LQ +LLRVL+E+ RVGG + Sbjct: 216 GHEKGSFTGAV-AMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEE 274 Query: 357 VPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVS 416 + VD+RV++AT+ +L +++G FR DL+YRL+++++ LPPLRER DI L F+ Sbjct: 275 IEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKV 334 Query: 417 LAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQF 474 + P + + L Y+WPGNIR+L N++E + + +V +L + Sbjct: 335 CTDNTMP----AKTFSTEALNYLTGYEWPGNIRQLENVVESCLVLVPGTVINVDNLPAEI 390 Query: 475 MQL---------LLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 LLP + ++AL + + + AA YLGIS++ + Sbjct: 391 RDEESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLVQVKAAEYLGISKSLLQYK 450 Query: 526 LKS 528 LK Sbjct: 451 LKK 453 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 161/483 (33%), Positives = 235/483 (48%), Gaps = 65/483 (13%) Query: 85 LIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQ 144 L+ G+DV A T G+ +E +P LV ++R+ +T A Sbjct: 20 LLAGEGHDVRAAS------TGEQGIKLVREELPELV----IMDVRMPGMDGLT---ALRA 66 Query: 145 INELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT-----VRQAFSDALDMTRMSLRH 199 I E+ A ++ A T+ A EA G F Y + A++ R Sbjct: 67 IREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGRRMRAR 126 Query: 200 NTHDATRNALRTRYVLGD-MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 A + + LG+ ++G S M QV + I A + A VL+ GE+GTGKEL A+A Sbjct: 127 VDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELVARA 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +++ + PF+ +NC AI ++LLE+ELFGYE+GAFTG+ R G E A Sbjct: 187 VYQH--------SLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGAT-NRRVGKIEQA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 +GGT+FLDEIG+MPL +Q +LLR+L+EK++ R+GG QP+PVDVR+I+AT+ +LE + G Sbjct: 238 NGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADG 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL+YRL ++ L LPPLRER DI PLA FL + P + Sbjct: 298 RFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMP----NPGITPEALAY 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPT--PDL----------------TPQFMQLLLP 480 L WPGN+REL N + + +F P PDL + L Sbjct: 354 LEAQPWPGNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAAD 413 Query: 481 ELARESAKTPAPR---------------LLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 + +E + L ++AL G++T AA LG+SR T + Sbjct: 414 QTMQELIRRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAK 473 Query: 526 LKS 528 ++ Sbjct: 474 IEK 476 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 156/524 (29%), Positives = 251/524 (47%), Gaps = 76/524 (14%) Query: 25 LFRDISLEFDHLANITPIQLGFEKA-VTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPV 83 + ++I + + + ++A + L D +A+ + K L Sbjct: 1 MAKEIKPAETSEVRVRVLIVDNDEAHAQAVADSLTRVGYDCTVAS-AGAESGKKALD--- 56 Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 LI+ +DV + + E D Sbjct: 57 -LIEVENFDV------------------------------------IITELMMDEVDGLE 79 Query: 144 QINELKANGTEA---VVGAGLITDLAEEAGMTGIFIYSAATVRQA-FSDALDMTRMSLR- 198 + KA +A ++ A AG G Y + + A+D +R Sbjct: 80 ILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRASSRIRL 139 Query: 199 -HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 T + +R L ++ ++G SP M ++ + + A + + VLI+GE+GTGKEL A+ Sbjct: 140 LRKTFELSRR-LDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGKELVAR 198 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH+ +K+ PFV +N A+ ES+LE+ELFG+E GAFTG+ R G FE Sbjct: 199 AIHQ--------NSERKNKPFVPLNISALPESILESELFGHEAGAFTGAA-TKRIGKFEY 249 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+GGTLFLDE+GEMP+ Q +LLRVLEE+ +TR+G + +P++VR+++AT+ +L++ +++ Sbjct: 250 ANGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKK 309 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G FR+DL++RLS++ + LPPL +R ADI L + FLK P RQ QA Sbjct: 310 GTFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQA--- 366 Query: 438 VLLHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFMQLLLPELAR-ESAKTPAP--- 492 L+ Y WPGNIRELRN++E + + + + D P+ + E + + + PA Sbjct: 367 -LMAYAWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDG 425 Query: 493 ---------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE G + AAN LGI T +R+++ Sbjct: 426 LIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIR 469 >UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0P6_DESRD Length = 452 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 145/403 (35%), Positives = 215/403 (53%), Gaps = 29/403 (7%) Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT-----VRQAFSDALDM 192 E + +I ++ + + A + G F Y A VR S+AL+ Sbjct: 62 ELNLLEKIKSHSPLTEVILITSTPNVEGAVASMKKGAFHYMAQPYKPNEVRLLTSNALEK 121 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 + L R+ +R + L +++G++P+M+ +++ I A VLI GETGTGK Sbjct: 122 RLLRLE---VQELRSMVRNKESLPNLIGKNPRMQNLKREIARVAPLDCNVLILGETGTGK 178 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A+ IH + F+AVNCGA+ E LL ELFG+E+ AFTG++R + Sbjct: 179 ELVAKTIHN--------MSMRADQKFLAVNCGALNEELLGNELFGHEKEAFTGAQR-VKK 229 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G+FE GGTL LDEIG+MPL +Q +LLRVL+EK + R+GG + +PVD RV++AT+ L+ Sbjct: 230 GVFEALAGGTLLLDEIGDMPLAMQVQLLRVLQEKSIMRIGGTREIPVDTRVLAATNRPLQ 289 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 ED+Q G FR+DL+YRL++ L++PPLRER DI FL+ + F+ + + Sbjct: 290 EDVQAGGFRQDLYYRLNVFTLRIPPLRERADDIPLFCRYFLE----KYTLEFNKTIERFS 345 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKT--- 489 +L HY +PGN+REL N++ER + P + +L P + KT Sbjct: 346 DEVVEILQHYQFPGNVRELENIIERAIVLCDG-PVLERRHLPRRLRSPRALQYETKTRDH 404 Query: 490 ----PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L G+K AA LGI RTT WR+LK+ Sbjct: 405 LLPLAELERQYIEDVLSIVGGNKKKAAEVLGIDRTTLWRKLKN 447 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 150/454 (33%), Positives = 226/454 (49%), Gaps = 25/454 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 ILI + L +L++A +L V +A K F+L L + D Sbjct: 7 ILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDV-VMPGRDGLT 65 Query: 144 QINELKANGTE--AVVGAGLI-TDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + +LK G + V+ +G ++A +A G + + + L +L+ Sbjct: 66 LLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPL--STDKLLLTVENALKLK 123 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + LR+R +++ + M +V I A S A V I GETGTGKELAA+ +H Sbjct: 124 RLETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLH 183 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + +K+ PF+ +NC A+ L+E+ELFG+E+G+FTG+ + G FE AH Sbjct: 184 E--------KSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQR-HIGKFEQAHR 234 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIG+MPL +Q +LLRVLEE EV RVGG + +PVDVRVI ATH NLE+ +++G+F Sbjct: 235 GTLFLDEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKF 294 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R+DLF+R+ + L LPPLR R DI L E F + ++A L Sbjct: 295 RQDLFHRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEA----LQ 350 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAP------RL 494 Y WPGN+RE+RN++ERL L T + ++ P Sbjct: 351 RYSWPGNVREMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQYER 410 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L++ T A LG+ R+ +++ ++ Sbjct: 411 EVILAELQRQKHHITNTAKALGLERSHLYKKCQA 444 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 148/482 (30%), Positives = 219/482 (45%), Gaps = 50/482 (10%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL--DQRSYITEEDA 141 ILI ++ L + + T ++ F+L L + + Sbjct: 7 ILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLET 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I L+ V+ A D A EA G + Y + + + + + Sbjct: 67 LKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRLM 126 Query: 202 HDAT----RNALRTRYVLGDM--LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + R G++ +G +M++V + I A VLI GE+GTGKEL Sbjct: 127 KEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKELV 186 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+A++ +K+ PF+ VNC AI E+L E+ELFGYE GAFTG+ R G F Sbjct: 187 ARALYHH--------SDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERT-HIGKF 237 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E HGGTLF DEI EMPL Q +LLR L+ E+ RVG QP+ VDVRV+ AT+ NLE + Sbjct: 238 ERCHGGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAV 297 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 +QGRFR DL++RL I+ + LPPLRER DI L + FL + + +R+ + Sbjct: 298 EQGRFREDLYWRLKIISIHLPPLRERPEDIPALVDYFL----VRFGEEYKSPIRRIEDGA 353 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL- 494 L + WPGN+REL N + R + S + + +F + E K P R+ Sbjct: 354 LAKLKSHAWPGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEWDKNPWARVE 413 Query: 495 ----------------------------LTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + LE+ ++ AA LG+SR T R+ Sbjct: 414 RKLEELIPDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRM 473 Query: 527 KS 528 K Sbjct: 474 KK 475 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 138/446 (30%), Positives = 209/446 (46%), Gaps = 30/446 (6%) Query: 86 IKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQI 145 I G++VL+A + + Q+ I +++L + D I Sbjct: 22 IALEGFNVLEAG----------NIKSAQKIIEKEEIDVVLCDVKLPD---GSGVDYARTI 68 Query: 146 NELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT--VRQAFSDALDMTRMSLRHNTHD 203 E + ++ A +A G F Y + + Sbjct: 69 KEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQLQKRIE 128 Query: 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREY 263 + + +Y +LG S + + A + VL+ GETGTGKE+ AQAIH Sbjct: 129 KLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQAIHN-- 186 Query: 264 FARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTL 323 + PFVA+NC A + LLE+ELFGY+ GAFT + R + GL E A+ GT+ Sbjct: 187 ------NSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRD-KKGLIEEANTGTI 239 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDEIGEMPL LQ++LLRVLE E +VG +P V+VR+I+AT+ +L+E+ Q+G FR D Sbjct: 240 FLDEIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFRED 299 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 L+YRL++ + LPPLRER DI LAE F+ + A ++ ++ A L ++ Sbjct: 300 LYYRLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQR----KQKVTPAFIEKLQLHE 355 Query: 444 WPGNIRELRNMMERLALFLSVEP--TPDLTPQFMQLLLPELARESAKTPAPRLLTPQQAL 501 W GNIREL+N++ER + + L + + L + L Sbjct: 356 WKGNIRELKNVLERAVIMAGGDDLAVEHLPLDLQIADKASTPLSAFDLASVEKLHIIRVL 415 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLK 527 +KT AA L I T +R+++ Sbjct: 416 YHTKNNKTEAARLLNIGLATLYRKIE 441 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 204/386 (52%), Gaps = 26/386 (6%) Query: 149 KANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNA 208 K A+V A I E G+ + T + + L+ +L++ ++ Sbjct: 219 KKENMYALVHANPIFYKEEFIGV--VCTEVDVTEAKILALELEKVNDTLKYLKNEVKN-- 274 Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 ++ +LG+S ++E+ + AR+++++ I GE+GTGKE+ A+AIH Sbjct: 275 -LSKGSFDKILGKSYKLEKSKAIAKQVARTNSSIFIWGESGTGKEVFARAIHDY------ 327 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 +K F+ VNC AI L E+E FGYE GAFTG+ + GR G+FE+A GT+FLDEI Sbjct: 328 --SERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTGASKKGRIGIFELAKDGTVFLDEI 384 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 ++PL +Q +LLRVL+EKE+ RVGG + ++ R+ISAT+ +L + ++ +FR DL+YRL Sbjct: 385 ADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATNKDLSKMVKAEKFREDLYYRL 444 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 +++ +++PPLRER DI L SFL+ + P + + + +Y W GNI Sbjct: 445 NVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTISKDVI----DIFQNYRWKGNI 500 Query: 449 RELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESA-------KTPAPRLLTPQQA 500 REL+N +E + + D P +M E T + +A Sbjct: 501 RELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEEYPLDLTKATQKIEIKNITKA 560 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRL 526 L+ NG+K AA L I RTT + ++ Sbjct: 561 LKMSNGNKAKAAKILNIPRTTLYYKI 586 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 240/469 (51%), Gaps = 39/469 (8%) Query: 73 AYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ 132 A LKS I+I VL+A + +++ L + F + Sbjct: 14 AILKSSTD--NIVITDENGIVLRASPNCLSIYGKDVSYLVGKSVYQLEK-ENIFCPSVTA 70 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA-TVRQAFSDALD 191 R +++ + ++ T VV A + ++ + + +S T + + + Sbjct: 71 RVLREKKE----VQLMQQTTTGRVVMATGVPVFDQQNCIVRVISFSHDLTELERLKEDYE 126 Query: 192 MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 R + H + L+ + +++ QS ME+V + + A+S A VL GE+G G Sbjct: 127 KLRKQMEHYQTEI--EELKPQ----NIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVG 180 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 K + A+ +H +++ PF+ VNC AI ESL E+E+FGYE+G+FTG+++ G+ Sbjct: 181 KNVFARFLH--------LSSSRRNEPFIEVNCSAIPESLFESEMFGYEKGSFTGAQKTGK 232 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 GL E+A GTLFLDEIGE+PL +Q +LL+VL+EK++ RVGG + VD R+I++T+ NL Sbjct: 233 PGLIELADQGTLFLDEIGELPLSMQAKLLKVLQEKKMIRVGGVKERTVDFRLIASTNRNL 292 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 EE ++QG FR+DLFYRL ++ + +P LRER DI LA+ FL+ + Sbjct: 293 EEMVKQGIFRQDLFYRLHVIPIYVPSLRERKEDIFMLAQYFLEKCNQKYHMD-----KYF 347 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQ-----LLLPELARE 485 + L+HY WPGN+REL NM+ERL + + P+ P +Q P LA + Sbjct: 348 HPSIVDHLVHYHWPGNVRELENMIERLVITSETKAIYPEYLPFSIQKHSKVAATPSLAEK 407 Query: 486 SAKT----PAPRLLTPQQALEKFNGDKT--AAANYLGISRTTFWRRLKS 528 ++ A + Q L KT A+YLGIS+ T R+LK Sbjct: 408 RSEPSTLKEAVEQVERQWLLRAAQQCKTTYEMADYLGISQPTVVRKLKK 456 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 132/428 (30%), Positives = 203/428 (47%), Gaps = 25/428 (5%) Query: 111 TYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAG 170 + E + L + + + +I L ++ + T +A Sbjct: 37 SGAEALERLQHSPADIVITDLSMPLMDGIELLSEIKSLYPQIFILILTSDDSTSQVVKAM 96 Query: 171 MTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRT----RYVLGDMLGQSPQME 226 G + Y F L H +Y +++GQ +M Sbjct: 97 KAGAYDYLLKPFD--FEMVERSIATILSHKAAVQAGLCPECLSGEQYCFENLIGQDRKMF 154 Query: 227 QVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 286 ++ + I A++SA VLI GE+GTGKEL A AIH A+ +K PF+ +NC A+ Sbjct: 155 EIYEMISQVAQTSATVLITGESGTGKELIASAIH--------AKSTRKDKPFIQINCAAL 206 Query: 287 AESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK 346 E L+ +ELFG+E+GAFTG+ + GLFE A GGTLFLDEIG++ Q LLR+LE Sbjct: 207 TEGLISSELFGHEKGAFTGAV-ARKKGLFEQASGGTLFLDEIGDISPTTQVSLLRILELG 265 Query: 347 EVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADIL 406 RVGG + + DVR+I AT+ +L ++ +FR DL+YRL+++ LQ PPLR+R +DI Sbjct: 266 TFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYRLNVVSLQAPPLRDRRSDIP 325 Query: 407 PLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP 466 L FL+ + + R + T+L +YDWPGN REL N++E +F Sbjct: 326 LLVRYFLERYCSLNNKQIDGVTRD----AMTLLCNYDWPGNCRELANIIEHAVIFSRGRT 381 Query: 467 TP-DLTPQFMQLLLPE-----LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 D P ++ L +A ++ LE+ N + AA L I+R Sbjct: 382 LDKDSLPSQIRTSDRHSSGLTLNLATATLADAESALIKKVLEESNWNLKKAAELLDIARG 441 Query: 521 TFWRRLKS 528 T + +++ Sbjct: 442 TLYGKMEK 449 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 221/473 (46%), Gaps = 52/473 (10%) Query: 84 ILIKPSGYDVLQA-LAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 ILI ++ +A L ++ S+ + T + A + ++L + + D Sbjct: 8 ILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFE-KASKNAYDLIVSDMR-MPNVDGM 65 Query: 143 GQINELKANGTE---AVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 +N +++ G V A + A +A G + Y + L + + Sbjct: 66 TMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLEIEE 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 R + +S M Q+ A S A VLI GE+GTGKE+ A+ I Sbjct: 126 TAPAVKRKKNTA-------IFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYI 178 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + S FVAVNC A+ E+L+E+ELFGYE+GAFTG+ + G FE+A Sbjct: 179 HE--------NSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAV-NRKPGKFELAD 229 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+ LDE+GE+PL LQ +LLRVL+EKEV R+GG +P ++VR+++ T+ L++++ +G Sbjct: 230 GGTILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGN 289 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ ++LPPLRER DI+ LA F + ++A L Sbjct: 290 FREDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKA----L 345 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTP--------------------------Q 473 L YDWPGN+REL + +ER + + + Sbjct: 346 LDYDWPGNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCE 405 Query: 474 FMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + + + L++ G++T AA+ LGI+ T +L Sbjct: 406 TTEDSVSAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKL 458 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 35/463 (7%) Query: 86 IKPSGYDVLQALAKAGKLTSSIGVVTYQETI-----PALVAFQKT-FNLRLDQRSYITEE 139 I+ D ALA+A + + + V Y TI + Q+ F + + + Sbjct: 16 IRVLIVDNDTALAQAMEES--LARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVD 73 Query: 140 --DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRM 195 + + E +V A EA G F + + + + A Sbjct: 74 GMEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADA 133 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 T+ L R+ ++ S +M+QV + A + A+VLI GE+GTGKEL Sbjct: 134 VRLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELV 193 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 AQAIH+ +KS VA+NC A+AE+L+E+ELFG+ +GA+T + R G F Sbjct: 194 AQAIHQ--------NSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDAL-NDRMGAF 244 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E A+GGTLFLDE+G+MPL Q +LLRVLEE ++TRVG ++P+ V+VR++SAT+ LE+ + Sbjct: 245 EYANGGTLFLDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAI 304 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 + G FR DL+YRL ++ ++LP LR+R DI+PLA+ F + + P + Sbjct: 305 KAGTFRADLYYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKP----NKGISPVV 360 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVE--PTPDLTPQFM---QLLLPELARESAK-- 488 L YDWPGN+R+LRN +E + + + DL P+ + +L P +A ++ Sbjct: 361 SRRLFSYDWPGNVRQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELI 420 Query: 489 ---TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ L+ +G++ AA LGI T +R+L Sbjct: 421 GQPLDNIERWAIEETLKLTSGNREEAARILGIGARTLYRKLDK 463 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 147/464 (31%), Positives = 227/464 (48%), Gaps = 36/464 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ D+ + L A + + E + L + + L + + D Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMDV 63 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + V+ A A EA G F + + L + + Sbjct: 64 LSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRLM 123 Query: 202 HD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 D R + ++G+ P M+ + + A S + VL+ GE+GTGKEL A+AI Sbjct: 124 RDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAI 183 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ + + PFVA+NC A+ E L+E ELFG+E+GAFTG+ ++G FE+A+ Sbjct: 184 HQ--------LSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTR-KSGKFEMAN 234 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIGE+PL LQ++LLRVLEE V R+G P+ +DVRV++AT+ LE+ ++ G Sbjct: 235 RGTIFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGA 294 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FRRDL+YRL++ +++PPLRER D++ +AE FL L P + L A L Sbjct: 295 FRRDLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAA----L 350 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQL-----------------LLPEL 482 + WPGN+REL+N +ER A+ E T L LPE+ Sbjct: 351 RAHLWPGNVRELQNTIERAAILHDTEVTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEV 410 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + ++++T + L + +K+AAA LGIS T ++ Sbjct: 411 SAQASRT--IEKAKIEATLRECKWNKSAAAERLGISYKTLLTKI 452 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 132/388 (34%), Positives = 203/388 (52%), Gaps = 20/388 (5%) Query: 145 INELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDA 204 I + G V I + EE S A + A + + + Sbjct: 68 IRQTLTTGEPVVNRRTYILNAKEE---CVPVRISTAVLHDAEGRTIGGVETFQDLSEVEK 124 Query: 205 TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYF 264 L++ Y D++G+SP M+ + +T+ L A+S + VLIEGE+GTGKEL A+ +H Sbjct: 125 LCRELKSHYTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHN--- 181 Query: 265 ARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 R + FV VNC A+ ++LLE+E FGYE GAFT ++R R+G FE+AH G++F Sbjct: 182 -----RSRRCRGQFVPVNCAALPDTLLESEFFGYEPGAFTDAKRS-RSGRFELAHCGSIF 235 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDEIG++ LQ RLLRVL+E+ V +G + +DVRVI AT+ NL+ ++QG FRRDL Sbjct: 236 LDEIGDISQALQVRLLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDL 295 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDW 444 +YR+ +++L++PPLRER DI L + F+ + + L YD+ Sbjct: 296 YYRIRVIKLRIPPLRERRDDIPLLIDHFINKFNQLQDKDIAG----VTDSVMNRLTEYDY 351 Query: 445 PGNIRELRNMMERLALFLSV--EPTPDLTPQFMQLLLPELA--RESAKTPAPRLLTPQQA 500 PGN+REL N++ER +F L + L ++ +A Sbjct: 352 PGNVRELENIVERAFVFCQGALIEMRHLPSELRDTQSRNLLGDKQGLTLKEMERALITRA 411 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLKS 528 L+ G + +A LGI+ +T +R++K+ Sbjct: 412 LQINKGHRKNSARTLGINPSTLYRKMKA 439 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 156/457 (34%), Positives = 223/457 (48%), Gaps = 26/457 (5%) Query: 84 ILIKPSGYDVLQAL--AKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + QAL + K + V + ++ + + + + + + + Sbjct: 6 ILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDGMEV 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 I + ++ A D A A G Y + + R Sbjct: 66 LKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKRGLF 125 Query: 202 HDATR--NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 D R L +Y +++G S M V +TI S + VLI GETGTGKEL A+AI Sbjct: 126 LDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKELVARAI 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + P++ VNC A+ E L+ +ELFG+ +GAFTG+ + GLFE A Sbjct: 186 H--------FNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAV-ADKRGLFEAAD 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG++ LQ LR LE+ E+ VG Q V VR+I+AT+ NLE ++QG Sbjct: 237 GGTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGG 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DL+YRL+++ + LPPLR+R DI LA FL A + +R + +L Sbjct: 297 FRKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNK----NIRGIAPRALRLL 352 Query: 440 LHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFM-----QLLLPELARESAKTPAPR 493 +Y WPGN+REL N++ER LF L+ E TPD PQ + L + E+ A Sbjct: 353 ENYSWPGNVRELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTSLEAVS 412 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWR---RLK 527 + LE N +KT A+ LGI R+T WR RLK Sbjct: 413 RRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLK 449 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 192/368 (52%), Gaps = 22/368 (5%) Query: 165 LAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQ 224 + + I ++ S + R + R + D++G+S Sbjct: 283 IYVAEYLPVIVSRRLKSIVVIVSSENSIQSAEKRLRLSKSER-GYTAKSHFEDIIGESRV 341 Query: 225 MEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 284 ++ YARS ++VLI GETGTGKEL AQ+IH E + PFVA+NC Sbjct: 342 LKDTIHLARKYARSQSSVLITGETGTGKELFAQSIHNE--------SSRADEPFVAINCA 393 Query: 285 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 344 A+ +SLLE+ELFGY +GAFTG+ + G+ G+FE+AH GT+FLDEIGEM L +Q +LLRVL+ Sbjct: 394 ALPQSLLESELFGYVKGAFTGANKEGKMGIFEMAHRGTVFLDEIGEMDLNVQAKLLRVLQ 453 Query: 345 EKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVAD 404 E+EV R+G + +PVD+R+ISAT+ NL E ++Q FR DL YRL++L L LPPLR R D Sbjct: 454 EREVCRLGDDRIIPVDIRIISATNKNLYELVEQKLFREDLLYRLNVLELNLPPLRSRTGD 513 Query: 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV 464 + L +++K ++ L + +L PGN+R+L N++ER+ Sbjct: 514 VPLLVNAYMKRQNRPVT---------FLPDAMELLSREPCPGNVRQLFNLLERIVTLSDG 564 Query: 465 EPTPDL----TPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 F P + AL K +G++ A LGIS Sbjct: 565 REISASWLKNIFSFSGKTEPLPGLLEDTVGNCEQTEIEHALRKNHGNRAKTAKDLGISTA 624 Query: 521 TFWRRLKS 528 T WR++K Sbjct: 625 TLWRKMKK 632 Score = 60.1 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 75/204 (36%), Gaps = 5/204 (2%) Query: 13 VIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNG 72 ++ + E R I E ++I+ + E+ ++ + A I G N Sbjct: 14 IVIFAASETFAEAARKIIAERHLESHISVTEATGEQTLS-CALEYARAGSRIFICRGRNT 72 Query: 73 AYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ 132 + ++ +SVPVI + ++ + AG + +V + + + F++ L + Sbjct: 73 SLIEHHVSVPVINVPYLYEEIYSSFEAAGAPPEQVAMVGFDKAHDIMRTFRRISGLDVQL 132 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGI----FIYSAATVRQAFSD 188 + + ++ GTEA++G + E G+ + + + A Sbjct: 133 IEPKSPDTIMDELKTALRPGTEALIGGFSVKRAIEAIRELGLRHIPLMVEPSNISLAIDS 192 Query: 189 ALDMTRMSLRHNTHDATRNALRTR 212 AL + R + + T + R Sbjct: 193 ALSILSSMERKDEYLTTISTTINR 216 >UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0D3_9PLAN Length = 462 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 142/432 (32%), Positives = 221/432 (51%), Gaps = 27/432 (6%) Query: 107 IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTE---AVVGAGLIT 163 I V Q + + + LDQ ++DA Q+ K + E +V + Sbjct: 32 ITVSQEQLAVHQIEQSVDLVLIDLDQ----GDQDALQQLRYWKNHKPETPCILVSSSDNI 87 Query: 164 DLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATR--NALRTRYVLGDMLGQ 221 D A A G Y V +T M N A ++ +++GQ Sbjct: 88 DTAVAAMKQGAADYLRKPVNSQKLIQSVITCMRSTRNAAPAVSASQHRPSQRGFENIVGQ 147 Query: 222 SPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 281 S M+++ + A++ + VLI GE+GTGKEL A+AIHR + + PFV V Sbjct: 148 SGAMQEIFEDARRVAQTDSTVLITGESGTGKELIAEAIHR--------NSPRAAEPFVTV 199 Query: 282 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 341 N A+ E L+E+ELFG+ +G+FTG+ R G FE AH GTLF+DEIG+ L Q +LLR Sbjct: 200 NMAAVPEHLVESELFGHTKGSFTGATES-RRGRFEAAHHGTLFIDEIGDFKLESQAKLLR 258 Query: 342 VLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRER 401 VLE +T +G +Q V+VRV++AT +LE+ +++GRFR DL+YRL+++ L+LPPLRER Sbjct: 259 VLENHTITPIGSNQDRHVNVRVVAATSHHLEKLVEKGRFREDLYYRLNVINLKLPPLRER 318 Query: 402 VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF 461 DI L +SF+ + + L+++ WPGN+R+LRN +E + + Sbjct: 319 NEDIALLVDSFMNQICQQIQRE----RPELSAELHQYLVNHTWPGNVRQLRNCLESMVVL 374 Query: 462 -----LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLG 516 L+++ PD+ + + E + QQ L + +G++T +A LG Sbjct: 375 SKSGRLTLDDLPDMLRNGEGVHDGIVIPEGIRLEELERTAIQQTLSRNHGNRTHSAKSLG 434 Query: 517 ISRTTFWRRLKS 528 +S T R+LK+ Sbjct: 435 MSVRTLQRKLKA 446 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 229/461 (49%), Gaps = 28/461 (6%) Query: 83 VILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 ILI + + +AL + + T + +L + Q Sbjct: 16 NILIVDADQTLAKALEQMLSDQGHHVEKLCTGKAAFESLARKTPELVILDLQLPDTDGWH 75 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTG--IFIYSAATVRQAFSDALDMTRMSLR 198 Q+++L VV +++ A + G ++ + + + Sbjct: 76 VFEQVSDLGDACPVVVVTGRELSEQAVTTLLNGPGDYLRKPISAEELAAVVQRTLENIRL 135 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA-AVLIEGETGTGKELAAQ 257 R+ Y ++ S +M QV + + A S A V I+GE+GTGKEL A+ Sbjct: 136 RKELACLRSQKGGCYDQPSIVACSREMGQVLEMVDKIASSDAATVFIQGESGTGKELVAR 195 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH + + S PF+A+NC A+ ++LLE+EL G+E+GAFT + + + GLFE+ Sbjct: 196 AIHYQ--------SARASQPFMAINCAAVPQTLLESELMGHEKGAFTDA-KNVKKGLFEL 246 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGT+FLDEIG+M +Q +LLRVLEE+ RVGG + + VDVR++SAT+ +L + M+ Sbjct: 247 ADGGTVFLDEIGDMDPAMQAKLLRVLEERTFRRVGGTRDIKVDVRIVSATNRDLHKAMED 306 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YR+ ++ +Q+PPLRER DILPLAE F++ + F+ +R + ++ Sbjct: 307 KSFRPDLYYRIGVIPVQIPPLRERRDDILPLAEFFIR----QFNREFNKKVRGISRMAQK 362 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEP--TPDLTPQFMQLLLP--------ELARESA 487 +LL Y WPGNIRELRN++ER + E +L + + + +L E Sbjct: 363 ILLEYSWPGNIRELRNVIERSVILECEEQLLVENLPRELVAQSVGDNIGPLNFQLPPEGV 422 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +QALE G++T AA L + F R+K Sbjct: 423 DIEDIERELIRQALEMAQGNQTQAAKLLRLGIDAFRYRMKK 463 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 135/436 (30%), Positives = 220/436 (50%), Gaps = 31/436 (7%) Query: 108 GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE 167 GV Q+ + + + + +A ++ + + ++ A + A Sbjct: 32 GVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGMEALEKVKGISSETVVILMTAYGTIESAV 91 Query: 168 EAGMTGIFIY-----SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQS 222 EA G + Y S + S + ++ + R+A + ++ Sbjct: 92 EAMRKGAYDYIIKPFSPDQIELLISRVNERQKLIAENK---YWRSASNVDEKSEPVYSKN 148 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 +M Q+ + + A+S A+VLI+GE+GTGKEL A+AIH + PF+ VN Sbjct: 149 SKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAIHYF--------SPRCEKPFIRVN 200 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 C A+AESLLE+ELFG+E GA+TG+ R G FE+A+ GTL LDE+ E+ +Q +LLRV Sbjct: 201 CAALAESLLESELFGHERGAYTGAV-AKRIGRFELANEGTLLLDEVSEISPNIQAKLLRV 259 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 LEE+E RVGG + + +DVR+++ T+ +L +++Q+G FR DLFYRL+++ + LPPLRER Sbjct: 260 LEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERR 319 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 DI LA ++L+ S+ +++++ + + L Y+WPGN+REL+N+M+R + Sbjct: 320 EDIPLLANTYLE----KYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELKNIMQRAVVMG 375 Query: 463 SVEPT----------PDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAA 512 S E + M + + LEK G+KT AA Sbjct: 376 SSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKELIFTTLEKTGGNKTKAA 435 Query: 513 NYLGISRTTFWRRLKS 528 L I+ T +L Sbjct: 436 GLLKITTRTLRNKLNK 451 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 131/351 (37%), Positives = 190/351 (54%), Gaps = 25/351 (7%) Query: 189 ALDMTRMSLRHNTHDATR--NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEG 246 A + ++ H + T ++T + +++G S M+ V I A + VLI G Sbjct: 528 AYERIKVLSEHLEQEKTYLAEEIKTSHNFEEIIGTSSSMQTVFNAIGQVAPTDYTVLIMG 587 Query: 247 ETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGS 306 ETGTGKEL A+A+H + ++ P V +NC A+ L+E+ELFG+E G+FTG+ Sbjct: 588 ETGTGKELIARAVH--------SLSARRDRPVVKINCAALPAQLIESELFGHERGSFTGA 639 Query: 307 RRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 366 R G FE+A+GGTLFLDEIGE+PL LQ +LLR ++EKE+ RVGG + ++ R+I+A Sbjct: 640 TEK-RIGKFELANGGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGVILINTRIIAA 698 Query: 367 THCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSA 426 T+ NL++++ GRFR DL+YRL++ + +PPLRER DILPL FL+ L P + Sbjct: 699 TNRNLQQEVAAGRFRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKISKKLGKPITN 758 Query: 427 ALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTP-----QFMQLLLPE 481 LQ LL Y WPGNIREL +++ER ++ P + + Sbjct: 759 IANASLQQ----LLQYPWPGNIRELEHVLERSSILSQSATLTLAEPLRAATTAFPPFVVQ 814 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTA----AANYLGISRTTFWRRLKS 528 + E L AL K G++ AA L I TT R+K Sbjct: 815 SSEEVKSIDDAMRLAILAALAKS-GNRIRGTGGAAELLNIKPTTLEARMKK 864 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 139/395 (35%), Positives = 202/395 (51%), Gaps = 35/395 (8%) Query: 154 EAVVGAGLITDLAEEAGMTGIFIYSAAT-----VRQAFSDALDMTRMSLRHNTHDATRNA 208 + VVG + D A + + + A + L + +LR+ A A Sbjct: 276 DVVVGTAMYQDTALLGLLYLRLKNKEQSAPLLELIGAIAAQLTLALNNLRYRQELAAGTA 335 Query: 209 L-------RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 R Y +++G SPQM++V + A S+A VLI GETG GKEL A AIH+ Sbjct: 336 FFPLTAQDRLEYAFPEIVGGSPQMQEVFNLMGQVAPSTATVLILGETGVGKELIAGAIHQ 395 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + V +NC AI +L+E+ELFG+E+G+FTG+ R G FE+A Sbjct: 396 A--------SDRAERQMVRINCAAIPANLIESELFGHEKGSFTGAT-DRRTGKFELADQS 446 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEIGE+ L LQ +LLRVL+EKE R+GG + VDVRVI+AT+ NL ++++ GRFR Sbjct: 447 TIFLDEIGELSLDLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFR 506 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL++ + LP LR+R ADI LA FL+ S ++ + A ++ Sbjct: 507 MDLYYRLNVFPISLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSA----MMK 562 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ-- 499 Y WPGNIREL +++ER + DL ++ S +T + ++ Sbjct: 563 YRWPGNIRELEHLIERQVILTEGTLIRDLDIPAAHQVM--ATDGSGQTEIKTIAQNERDH 620 Query: 500 ---ALEKFNGD---KTAAANYLGISRTTFWRRLKS 528 L NG K AA LG+ TT ++K Sbjct: 621 IFSVLRLCNGKISGKNGAAKLLGVPATTLNSKIKK 655 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 439 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 126/342 (36%), Positives = 184/342 (53%), Gaps = 43/342 (12%) Query: 216 GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKS 275 G ++GQS QM+ V + A S + VL+ GE+GTGKE+ A+ IH +K Sbjct: 194 GGVIGQSKQMQAVMDLVYHVAPSRSTVLLRGESGTGKEVIARTIHY--------LSPRKE 245 Query: 276 HPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPL 335 PF+ VNC A+ E++LE+ELFG+E+GAFTG+ R G FE+AHGGTLFLDEIG++ + Sbjct: 246 GPFIKVNCSALPETILESELFGHEKGAFTGALFE-RKGRFELAHGGTLFLDEIGDISPAV 304 Query: 336 QTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQL 395 Q +LLRVL+E+E RVGG++ + VDVRVI+AT+ NLEE + +G FR DL++R++++ + L Sbjct: 305 QVKLLRVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISL 364 Query: 396 PPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMM 455 PPLRER DI LA+ L L+ + + +L++ WPGN+REL N + Sbjct: 365 PPLRERKEDIPLLADHILNKIGKELNRKL-----RITPEALKLLINCHWPGNVRELENCL 419 Query: 456 ERLALFLSVEPTPDLT---------------PQFMQLLLPELARESAKTPAPR------- 493 ER A ++ + + P ++ E AK+ Sbjct: 420 ERAATNSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFS 479 Query: 494 -------LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 QA+EK + AA L I+ LK Sbjct: 480 PLISDDPKEKIIQAMEKCGWVQAKAARLLNITPRQLGYALKK 521 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 439 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 141/428 (32%), Positives = 216/428 (50%), Gaps = 39/428 (9%) Query: 123 QKTFNLRLDQRSYITEE--DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIY--- 177 + +L L + +E+ + + E ++ + A E+ G F Y Sbjct: 43 GEEIDLALLDLNLGSEDGIEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKK 102 Query: 178 --SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLY 235 A +R AL + + L R ++G+S +++ + Sbjct: 103 PFKADALRLIVKLALKTQTLKREVRKLKRNDSPLPGRSP---IIGKSEAFQEMAAQVREI 159 Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 AR + VLI GE+GTGKE+ A+AIH +K F+A+NC +I LLE+EL Sbjct: 160 ARIPSTVLITGESGTGKEVVARAIHD--------LSDRKEQAFIAINCASIPAPLLESEL 211 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FG+E+GAFTG+ G + GLFE AH GT+FLDEIGEM + +Q +LLRVL+E+ + RVG + Sbjct: 212 FGHEKGAFTGAS-GRKKGLFEEAHHGTIFLDEIGEMDMAMQVKLLRVLQERTIRRVGAVK 270 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 + +D RVI+AT+ NL + +++ FR DLFYRL++ + +PPLRER ADI LA FL Sbjct: 271 DIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRERPADIAALAVYFLDS 330 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP-TPDLTPQF 474 + F R +E ++ Y WPGN+RELRN++ER+ + S P+ PQ Sbjct: 331 FSRSFGRDF----RDVSPEAEQLMAQYAWPGNVRELRNVIERICIMRSGPTLLPEHLPQE 386 Query: 475 MQLLL--------------PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRT 520 ++ + +L E A + + L QQAL+K + A L I R Sbjct: 387 IRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSL-IQQALQKTGWNVLQTAANLKIPRG 445 Query: 521 TFWRRLKS 528 T +++ Sbjct: 446 TLRYKMEK 453 >UniRef50_Q24RP4 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24RP4_DESHY Length = 588 Score = 439 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 127/345 (36%), Positives = 197/345 (57%), Gaps = 31/345 (8%) Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + + N ++ ++LG+S M +AR A +LI+GE+GTGKE+ AQ+IH Sbjct: 249 AQERSPNHSEAQFKFKEILGESAAMLTTIDNARKFARIEANILIQGESGTGKEVFAQSIH 308 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 E + PFVA NC AI +L+E+ELFGYE G+FTG+ R GR G E A+G Sbjct: 309 NES---------RPRGPFVAENCAAIPRTLIESELFGYEGGSFTGAERQGRIGKIEQANG 359 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIG+MPL LQ LLRV+EEK+V RVGG++ +PVD R+I+AT+ +L + + +F Sbjct: 360 GTLFLDEIGDMPLELQAVLLRVIEEKKVKRVGGNRSIPVDFRLITATNKDLLKLTRNNQF 419 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YR++ ++ +PPLRER DIL LAE ++K+ + + ++ +LL Sbjct: 420 REDLYYRIATFKICIPPLRERGGDILHLAEHYIKLYAQKQKIR----VPSLSKTAKYMLL 475 Query: 441 HYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARESAKT---------- 489 YDWPGN+R+L+N + + + P+ P + L + A+ Sbjct: 476 KYDWPGNVRQLQNAVLYAVTMAKNGQIRPEDFPSEIVLENTQANNPKAQPLTLGKVNDCG 535 Query: 490 -------PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++AL++ N + A+ LG+S++T +R++K Sbjct: 536 KDKITSINELEKVAIERALQQTNNNIRIASELLGMSKSTLYRKIK 580 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 148/423 (34%), Positives = 217/423 (51%), Gaps = 34/423 (8%) Query: 123 QKTFNLRLDQRSYITEEDARGQINELKANGT---EAVVGAGLITDLAEEAGMTGIFIYSA 179 + ++L + + +D + +L+ NG ++ A + A A G + Y Sbjct: 50 KHPYDLLIMDVR-MPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVI 108 Query: 180 ATV---RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYA 236 L + + R M+G SP M+++ + I A Sbjct: 109 KPFDVEEVTLVVKRLFDHQQLASKVRELEAKSFDPR---DKMIGNSPAMQEIYKQIGRVA 165 Query: 237 RSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELF 296 + A VLI GETGTGKE+ A IH +++ P V VNC A+ ESLLE+ELF Sbjct: 166 HTDATVLITGETGTGKEVLANLIH--------VNSARRNGPMVKVNCAALPESLLESELF 217 Query: 297 GYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQP 356 G+E+GAFTG+ R G FE+AH G++FLDEIGEM L Q +LLR+L+E+E RVGG Sbjct: 218 GHEKGAFTGAVAQ-RKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTT 276 Query: 357 VPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVS 416 V VDVRVI+AT+ +LE D++ G FR DL+YRL+++ L LP LR+R+ DI LAE FL Sbjct: 277 VRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKY 336 Query: 417 LAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF-----LSVEPTPDLT 471 A S+P + + + + L +YDWPGN+R+L + +ER + ++ E + Sbjct: 337 RYAPSSPPA----RISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGNVITSEHMSLVP 392 Query: 472 PQFMQLLLPELARESAKTPAPRLLTP------QQALEKFNGDKTAAANYLGISRTTFWRR 525 L + AR K+ LL Q+AL + + D AA LG+S F +R Sbjct: 393 SSRSALQVDIAARLREKSTLEELLADVERLALQEALVQHDDDLKVAARSLGLSEAEFQKR 452 Query: 526 LKS 528 K Sbjct: 453 QKK 455 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 134/336 (39%), Positives = 195/336 (58%), Gaps = 26/336 (7%) Query: 205 TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYF 264 AL +++ M+G+S M V + + A + VL+ GE+GTGKEL A A+H Sbjct: 263 LERALAAQHIRRSMIGRSSVMRGVFRLVESLADTDTTVLVTGESGTGKELVADALHHSG- 321 Query: 265 ARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLF 324 + PFV VNC A++E+LLE+ELFG+ GAFTG+ + R G ++AHGGTLF Sbjct: 322 -------ARAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKD-RTGRIQMAHGGTLF 373 Query: 325 LDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDL 384 LDEIG++ +Q +LLRVL+EKE+ RVG +PV VDVRV++AT+ +L + +G+FR DL Sbjct: 374 LDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKSLRALVARGKFREDL 433 Query: 385 FYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDW 444 +YRL ++ + LP LRER DI LAE F++ + F + +++ +L+ YDW Sbjct: 434 YYRLKVVEVHLPALRERREDIPLLAEHFIE----EFNEHFHRRVSGLDSSAQQLLVQYDW 489 Query: 445 PGNIRELRNMMERLALFL--SVEPTPDLTPQFMQL-----------LLPELARESAKTPA 491 PGN+RELR+ +E + +V P L + MQ L A ++A A Sbjct: 490 PGNVRELRHAVEHAFIMAGGNVIPAAALPAELMQSGRFSAQSAGTGALRHDAPDAAAQGA 549 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL++ G+K AA LGISR T +RRL+ Sbjct: 550 EWKQRLSAALKETGGNKAKAARLLGISRQTMYRRLR 585 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 202/371 (54%), Gaps = 35/371 (9%) Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 ++ + + + + + A L +Y L ++G SPQ+ ++ + A Sbjct: 98 QLNSILEKINQKEENEKKLIYFRNRSAQDGVL-CQY-LCSIIGSSPQLREICKLAGEVAP 155 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 + VLI GETGTGKEL A+ I + + PF+A+NC AI E+LLE+ELFG Sbjct: 156 TDLPVLITGETGTGKELLARGI--------WKLSKRSNKPFIAINCAAIPENLLESELFG 207 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 YE+GAFTG+ + + G FE+A GGT+FLDEIGE+PL Q++LLRVL+E RVGG++ + Sbjct: 208 YEKGAFTGAEKT-KEGKFELADGGTIFLDEIGELPLSAQSKLLRVLQEGTFYRVGGNKEI 266 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 VDVRV++AT+ +LE+ + +G+FR DL+YRL+++ L LPPLRER DI + E + Sbjct: 267 KVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLRERKEDIPYIVECIVNKYN 326 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL--SVEPTPDLTPQFM 475 LS + A ++ ++ VL W GNIREL N + R + ++ DLT Sbjct: 327 QKLSKSIAGASKEYME----VLKDQRWEGNIRELENTVVRSMILCRDNILTVNDLTFLRE 382 Query: 476 QLLLPELARESAKTPAPRLLTPQQ------------------ALEKFNGDKTAAANYLGI 517 + + P++ + R+L + ALE ++ A+ LGI Sbjct: 383 KRVKPQIEDNFEEILKNRVLASLEEGSIEEIKEKIDKIIVQTALEYTKHNQVKASQLLGI 442 Query: 518 SRTTFWRRLKS 528 +R T ++++ Sbjct: 443 NRATLRKKIQK 453 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 134/412 (32%), Positives = 212/412 (51%), Gaps = 30/412 (7%) Query: 126 FNLRLDQRSYI--TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR 183 F+L + T + + ++ A + A EA G Y + Sbjct: 46 FDLIISDFLLEDGTGLEILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPI- 104 Query: 184 QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVL 243 D+ + + + + ++G+S +M+ + + I + ++S +++L Sbjct: 105 -------DIDNLIKIIDFYIKKQENFDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSIL 157 Query: 244 IEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAF 303 IEGE+GTGKEL A+AIHR R + + PF+ +NC AI L E ELFG+E+G+F Sbjct: 158 IEGESGTGKELVAKAIHR--------RSKRANQPFIPINCSAIPNELFENELFGHEKGSF 209 Query: 304 TGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRV 363 TG+ G E+A GTLFLDEIGEMPL +Q +LLRVL+E+E RVGG + + + RV Sbjct: 210 TGAS-NREIGKIELAGEGTLFLDEIGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRV 268 Query: 364 ISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAP 423 ISAT+ NLEE ++ FR DLFYR++++ L++PPLRER DI L + F+ S Sbjct: 269 ISATNRNLEEMVENKEFREDLFYRINVIHLKIPPLRERKEDIPLLVKKFID----KFSKI 324 Query: 424 FSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-----PTPDLTPQFMQLL 478 + + + +L++YDWPGN+R+L N++ER + E PD Q + Sbjct: 325 NNKNVYDIDNDALEILMNYDWPGNVRQLENIIERAVVLCQGEIITANHLPDRIKSNSQKI 384 Query: 479 LPELARESAKTPAPRLL--TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + E+ + + L++ N ++T AA LGISR ++K+ Sbjct: 385 SENIRSENNSLNLYDIEKNIILKVLQEENFNQTRAAQKLGISRKQLRTKMKN 436 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 126/310 (40%), Positives = 183/310 (59%), Gaps = 13/310 (4%) Query: 219 LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPF 278 +G+S + V A++S+ VLI+GE+GTGKE+ A+ +H++ + + PF Sbjct: 319 VGRSQATQSVFSRADKAAQTSSTVLIQGESGTGKEIVARYLHQQ--------SPRHNKPF 370 Query: 279 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTR 338 VA+NC AI +L+E+ELFGY +GAFTG+++GG G FE+A GGT+FLDEIG+MP +Q Sbjct: 371 VAINCAAIPATLIESELFGYADGAFTGAKKGGAPGKFEVAQGGTVFLDEIGDMPSNVQAS 430 Query: 339 LLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPL 398 LLRVL+E+EV R+G +P PVDVRV++AT+ +L ++QG FR DL+YRL ++ + +PPL Sbjct: 431 LLRVLQEREVVRIGDSRPRPVDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPL 490 Query: 399 RERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERL 458 R+ DI L F+K A + +A LL+Y WPGNIREL N ME + Sbjct: 491 SRRLDDIYDLVPYFVKKICRASGREPMGVTDEVYEA----LLNYHWPGNIRELENCMESM 546 Query: 459 ALFLSVE-PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGI 517 T D P + + ++ QAL + NG AA LGI Sbjct: 547 VAMAEHSYLTTDDLPAEIAKNVSAVSCGETLLEQQTKKAIMQALAETNGKIAPAARLLGI 606 Query: 518 SRTTFWRRLK 527 RTT +R+++ Sbjct: 607 GRTTLYRKIE 616 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 144/469 (30%), Positives = 219/469 (46%), Gaps = 40/469 (8%) Query: 83 VILIKPSGYDVLQALAK--AGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 V+L+ ++ +L K + +G E + L + L + T D Sbjct: 17 VVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMD 76 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT-----VRQAFSDALDMTRM 195 + ++ A + A +A G + + V + +AL+ + Sbjct: 77 LLKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSL 136 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + A R+R ++G S + + A S A VL+ GE+GTGKEL Sbjct: 137 VVENRVLRAQLAEQRSR----AVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELL 192 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+++H + PF+A+NC AI ES+LE ELFGYE+GAFTG+ R G F Sbjct: 193 ARSLHEG--------SARADKPFIAINCAAIPESILEGELFGYEKGAFTGAT-SSREGRF 243 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH-QPVPVDVRVISATHCNLEED 374 E A GGTLFLDE+GEMP +Q +LLRVL+E E+ R+GG + P+D+R+I+AT+ L + Sbjct: 244 EAASGGTLFLDEVGEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKA 303 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +Q+GRFR DL+YRL+++ + +PPLRER DI L + FL+V + Q Sbjct: 304 VQEGRFREDLYYRLNVISIAVPPLRERRDDIPLLVQHFLQVYADKNGK----FMAGCTQD 359 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD--LTPQFMQLLLPELARE------- 485 + L Y WPGN+REL N +ER + E + L + Sbjct: 360 ALDRLCRYAWPGNVRELENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGG 419 Query: 486 ------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + + L GDK AA LGI+ T +RRL++ Sbjct: 420 ALRFAVGTPLAEIEMAVIHETLRHTKGDKRLAAKLLGIATRTIYRRLEA 468 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77743 Propionate catabolism operon regulatory protein ... 681 0.0 UniRef50_P74839 Propionate catabolism operon regulatory protein ... 636 0.0 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 578 e-163 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 575 e-162 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 572 e-161 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 570 e-161 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 563 e-159 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 563 e-159 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 561 e-158 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 556 e-157 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 556 e-157 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 556 e-157 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 556 e-157 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 554 e-156 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 553 e-156 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 553 e-156 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 552 e-155 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 552 e-155 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 551 e-155 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 551 e-155 UniRef50_Q6ARB9 Probable two-component system response regulator... 551 e-155 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 551 e-155 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 551 e-155 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 550 e-155 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 549 e-154 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 549 e-154 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 548 e-154 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 548 e-154 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 548 e-154 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 545 e-153 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 544 e-153 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 542 e-152 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 541 e-152 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 541 e-152 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 541 e-152 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 540 e-152 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 540 e-152 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 540 e-152 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 540 e-152 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 540 e-152 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 539 e-152 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 539 e-152 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 538 e-151 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 538 e-151 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 538 e-151 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 538 e-151 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 538 e-151 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 538 e-151 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 538 e-151 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 537 e-151 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 537 e-151 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 537 e-151 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 537 e-151 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 536 e-151 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 536 e-151 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 535 e-150 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 535 e-150 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 534 e-150 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 532 e-149 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 530 e-149 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 530 e-149 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 530 e-149 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 530 e-149 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 529 e-149 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 529 e-148 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 529 e-148 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 529 e-148 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 528 e-148 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 527 e-148 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 527 e-148 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 526 e-148 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 526 e-148 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 526 e-148 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 526 e-148 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 526 e-147 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 526 e-147 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 525 e-147 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 525 e-147 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 525 e-147 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 523 e-147 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 523 e-147 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 523 e-147 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 523 e-147 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 521 e-146 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 521 e-146 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 521 e-146 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 521 e-146 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 520 e-146 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 520 e-146 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 519 e-146 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 519 e-146 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 519 e-146 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 519 e-146 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 519 e-146 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 519 e-146 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 519 e-146 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 519 e-145 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 519 e-145 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 518 e-145 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_A6GNB9 Propionate catabolism operon regulatory protein ... 517 e-145 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 517 e-145 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 516 e-145 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 514 e-144 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 514 e-144 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 513 e-144 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 513 e-144 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 512 e-143 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 512 e-143 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 512 e-143 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 511 e-143 UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC ... 511 e-143 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 511 e-143 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 511 e-143 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 510 e-143 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 510 e-143 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 510 e-143 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 510 e-143 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 509 e-143 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 509 e-143 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 509 e-143 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 509 e-142 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 508 e-142 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 508 e-142 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 508 e-142 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 508 e-142 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 507 e-142 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 506 e-142 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 506 e-142 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 506 e-142 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 506 e-142 UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional... 506 e-142 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 506 e-142 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 506 e-141 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 506 e-141 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 505 e-141 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 505 e-141 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 505 e-141 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 505 e-141 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 505 e-141 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 505 e-141 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 505 e-141 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 504 e-141 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 504 e-141 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 504 e-141 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 504 e-141 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 504 e-141 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 504 e-141 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 503 e-141 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 502 e-140 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 502 e-140 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 501 e-140 UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 499 e-140 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 499 e-140 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 498 e-139 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 498 e-139 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 498 e-139 UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 497 e-139 UniRef50_A3ERY0 Putative two component, sigma54 specific, transc... 497 e-139 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 497 e-139 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_P26047 Signal-transduction and transcriptional-control ... 497 e-139 UniRef50_B5JRE5 Putative PEP-CTERM system response regulator n=1... 497 e-139 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_B5XN53 Sigma-54 dependent transcriptional regulator n=2... 496 e-139 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 496 e-139 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 496 e-139 UniRef50_Q2P7A6 Propionate catabolism regulatory protein n=12 Ta... 496 e-138 UniRef50_B2JEB5 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 495 e-138 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 494 e-138 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 494 e-138 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 494 e-138 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 494 e-138 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 494 e-138 UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional... 493 e-138 UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/res... 493 e-138 UniRef50_A8RUM4 Putative uncharacterized protein n=1 Tax=Clostri... 493 e-138 UniRef50_D0LHR5 Two component, sigma54 specific, transcriptional... 493 e-138 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 493 e-138 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 493 e-137 Sequences not found previously or not previously below threshold: UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 518 e-145 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 514 e-144 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 511 e-143 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 504 e-141 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 501 e-140 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 499 e-139 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 498 e-139 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 496 e-138 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 495 e-138 UniRef50_Q3B305 Two component transcriptional regulator, Fis fam... 495 e-138 UniRef50_C1A568 Putative NtrC family two-component response regu... 494 e-138 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 494 e-138 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 494 e-138 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 493 e-138 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 493 e-137 >UniRef50_P77743 Propionate catabolism operon regulatory protein n=50 Tax=Proteobacteria RepID=PRPR_ECOLI Length = 528 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 527/527 (100%), Positives = 527/527 (100%) Query: 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE 60 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE Sbjct: 1 MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANE 60 Query: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV Sbjct: 61 RCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALV 120 Query: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA Sbjct: 121 AFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAA 180 Query: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA Sbjct: 181 TVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA 240 Query: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE Sbjct: 241 AVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE 300 Query: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD Sbjct: 301 GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVD 360 Query: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL Sbjct: 361 VRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAAL 420 Query: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP Sbjct: 421 SAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP 480 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK Sbjct: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 >UniRef50_P74839 Propionate catabolism operon regulatory protein n=46 Tax=Enterobacteriaceae RepID=PRPR_SALTY Length = 541 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 420/526 (79%), Positives = 454/526 (86%), Gaps = 2/526 (0%) Query: 5 PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDA 64 PR N DKPVIWTVSVTRLFELFRDISLEFDHLA ITPIQLGFEKAVTYIRKKLA ERCDA Sbjct: 8 PRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFEKAVTYIRKKLATERCDA 67 Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK 124 IIAAGSNGAYLKSRLS+PVILIKPSG+DVLQALAKAGKLTSSIG+VTYQETIPAL+AFQK Sbjct: 68 IIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAKAGKLTSSIGIVTYQETIPALLAFQK 127 Query: 125 TFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 TF+LRL+QRSY+TEEDARGQINELKANG EAVVGAGLITDLAEEAGMT IFIYSAATVRQ Sbjct: 128 TFHLRLEQRSYVTEEDARGQINELKANGIEAVVGAGLITDLAEEAGMTAIFIYSAATVRQ 187 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 AF DALDMTR++ R + L+TRY LGD+ GQSPQMEQ+RQTI LYARS AAVLI Sbjct: 188 AFHDALDMTRLTRRQRVDYPSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLI 247 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 +GETGTGKELAAQAIH+ +F R RQ K S PFVAVNCGAI ESLLEAELFGYEEGAFT Sbjct: 248 QGETGTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFGYEEGAFT 307 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK VTRVGGHQP+PVDVRVI Sbjct: 308 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVI 367 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 SATHC+L+ ++ QGRFR DLFYRLSILRL LPPLRER ADILPLAESFLK SLAA+ PF Sbjct: 368 SATHCDLDREIMQGRFRPDLFYRLSILRLTLPPLRERQADILPLAESFLKQSLAAMEIPF 427 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR 484 + ++R GL + +LL + WPGNIRELRNMMERLALFLSV+P P L QFM+ LLPEL Sbjct: 428 TESIRHGLTQCQPLLLAWRWPGNIRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMV 487 Query: 485 ESAKT--PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A+ Q L +F GDKTAAA YLGISRTT WRRLK+ Sbjct: 488 NTAELTPSTVDANALQDVLARFKGDKTAAARYLGISRTTLWRRLKA 533 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 227/469 (48%), Gaps = 29/469 (6%) Query: 75 LKSRLSVPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQ 132 + ++ + IL+ VL L + E + L + Sbjct: 1 MATKKKMEKILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLN 60 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT--VRQAFSDAL 190 + + + + V+ + EA G F Y + Sbjct: 61 MPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVS 120 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 + + + L+ +Y + +G SPQ+++V + I A + + VLI GE+GT Sbjct: 121 TAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGT 180 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL A+AIH ++ P V +NCGAI E LLE+ELFG+E+GAFTG+ + Sbjct: 181 GKELIARAIHY--------NSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKT- 231 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 R G FE+A+GGT+FLDEIG+M LQ +LLRV++E+ R+G + + VD+R+++AT+ + Sbjct: 232 RIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKD 291 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 L E +++ FR DL+YRL+++ +++PPLR+R +DI L + F+ A P +++ Sbjct: 292 LMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERP----VKR 347 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKT 489 QA+ L+ + WPGN+REL N++ER+ + S + + P + L + K Sbjct: 348 ISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKL 407 Query: 490 -----------PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 QALE+ N KT AA L I+RTT ++K Sbjct: 408 PSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMK 456 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 149/464 (32%), Positives = 226/464 (48%), Gaps = 34/464 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVT--YQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ + AL K + + + + + + + + Sbjct: 4 LNKILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDG 63 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 + + +L ++ A D A EA G Y + + + Sbjct: 64 LEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVN 123 Query: 199 HNTHDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 H + R+ L +Y G ++G S + V I A S+A VL+ GE+GTGKE+ A Sbjct: 124 HLQEEVTFLRSELNKKY--GQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITA 181 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +IH+ ++ PFV +NC A+ ESLLE+ELFG+E+GAFTG+ + G FE Sbjct: 182 LSIHQ--------LSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAV-ARKLGRFE 232 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+ GTLFLDEI EMPL +Q +LLRVL+EKE RVGG + +DVRVI+AT+ + E ++ Sbjct: 233 LANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIR 292 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DLFYRL++L + LPPLRER DI LA F+K + ++ + Sbjct: 293 KGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFN-------PSQEQRMSPEAM 345 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP-----------ELAR 484 +L+ Y+WPGNIREL+N++ER + P P+ +Q L Sbjct: 346 GLLISYEWPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPD 405 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + +ALEK NG++T AA LGI+R+ R + Sbjct: 406 DGISFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQK 449 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 148/462 (32%), Positives = 231/462 (50%), Gaps = 25/462 (5%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + LA + + E I L L + + Sbjct: 1 METILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMS 196 + +I + ++ A D+ A G + Y Q M Sbjct: 61 MELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMY 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + +N L RY G+++G+SP M + TI+ A ++A VLI+GE+GTGKE+ A Sbjct: 121 RVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 ++IH +K P+VAVNC A+AES+LE+ELFG+E+GAFTG+ + G FE Sbjct: 181 KSIH--------FNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAA-AMKKGRFE 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGTLFLDEIGE+ LQ +LLRVL+EK RVGG +P+ VD+R+I+AT+ +L+++++ Sbjct: 232 LADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVE 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 FR DLFYRL++L +QLPPLRER DI L + FL+ + + +R+ Sbjct: 292 NSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYAS--GPSGESRVRKVHPDVH 349 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPA--- 491 + Y WPGN+REL N++ER + + + DL + + + L E A Sbjct: 350 RLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATLY 409 Query: 492 -----PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++A+ + ++ AA LGI ++ +++K Sbjct: 410 ETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKK 451 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 150/450 (33%), Positives = 222/450 (49%), Gaps = 19/450 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + L+ L+ + + L + + IT D Sbjct: 7 ILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDITGLDI 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 Q+ ++ A A +A G F Y V + ++ S Sbjct: 67 LEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFERSQLL 126 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R LR RY LG+M+G+S M+++ I A+ A VL+ GETGTGKEL A+ I Sbjct: 127 EENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGI 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + PFV ++C A+ E+LLE+ELFG+ GAFTG+ + G E+AH Sbjct: 187 HYAGQEENL--------PFVPIDCAAVPETLLESELFGHSRGAFTGAAEQ-KKGQIELAH 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+PL LQ + LR L+EKE+ R+G + VDVR+I+AT+ +LE ++ G+ Sbjct: 238 GGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQ 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 +R DLFYRL+++ +++PPLRER DI PL FL A A++ V Sbjct: 298 WREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGK----AIQGMTGEVMEVF 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPD--LTPQFMQLLLPELARESAKTPAPRLLTP 497 + YDWPGN+REL N++ER + + L P+ + P + + Sbjct: 354 MAYDWPGNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAPAPSTDGVNLMEMEKRLI 413 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q LEK +++AAA LGISR ++K Sbjct: 414 VQTLEKTEQNQSAAARELGISRKQLRTKMK 443 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 146/459 (31%), Positives = 229/459 (49%), Gaps = 30/459 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ V +AL + + + + +E + + + L + + Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + E ++ A T A G F Y + + ++ Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + + R G ++G SP M++V +TI A S VLI+GE+GTGKEL A+AIH Sbjct: 125 VTVGKGEIAPRP--GTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHY 182 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 ++ PFV ++C AI E+LLE+ELFG+E+GAFTG+ + G FE+A GG Sbjct: 183 --------NSPRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTR-KLGKFELADGG 233 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEIG++ LQ +LLR L+EK RVGG + VDVR+I+AT+ +LEE ++ G FR Sbjct: 234 TVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFR 293 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL+++ ++LPPLRER DI+ L + F+ +S + ++ +LL Sbjct: 294 EDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVT----GLTRSVADILLQ 349 Query: 442 YDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFM------------QLLLPELARESAK 488 Y+WPGN+RELRN+ ER L P+ P+++ + Sbjct: 350 YNWPGNVRELRNVCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEM 409 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE++ G+KTA A LG+SRTT + ++K Sbjct: 410 VAEMERSAILRALEEYRGNKTAVARALGMSRTTLYAKMK 448 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 151/463 (32%), Positives = 220/463 (47%), Gaps = 32/463 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ +A+A T ++ + L L ++ + Sbjct: 18 ILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGIEI 77 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT--VRQAFSDALDMTRMSLRH 199 ++ E ++ + A EA G F Y + S Sbjct: 78 LKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSRLV 137 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R LR +Y +++G S M+ V + + + +LI GE+GTGKEL A+AI Sbjct: 138 AENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAI 197 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H ++ PFVA+NCGAI LLE+ELFG+ GAFTG+ + G F+ AH Sbjct: 198 HY--------NGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVAD-KTGKFQQAH 248 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIG MPL LQ +LLRVL+E+EV +VG + + +DVRVISAT+CNLEE+++QGR Sbjct: 249 QGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGR 308 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + LPPLRER DI LA FL+ + ++ P + + L Sbjct: 309 FRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLIS----ITPGAMNCL 364 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT--PDLT---------PQFMQLLLPELARESAK 488 +Y WPGN+REL N++ER DL + Q+ P L Sbjct: 365 ENYHWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMD 424 Query: 489 TPAP----RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P + A+ G K AA+ L I RTT ++K Sbjct: 425 MPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIK 467 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 563 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 154/462 (33%), Positives = 227/462 (49%), Gaps = 28/462 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI +V + L+ A L + + L + + Sbjct: 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDG 63 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 A ++ + ++ A + A EA G F Y + + + L+ Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 Query: 199 HNTHDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + AL T + G +L SP M + + A S A+VLI GE+GTGKEL A Sbjct: 124 SMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIA 183 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH + PF+ VNC A+ ESLLE+ELFG+E+GAFTG+ + R GLFE Sbjct: 184 RAIHY--------NSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGA-QTLRQGLFE 234 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A+ GTL LDEIGEMPL LQ +LLR+L+E+E R+GGHQ + VD+R+I+AT+ +L+ ++ Sbjct: 235 RANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DLFYRL+++ L LPPLR+R DI LA FL+ + + + Sbjct: 295 EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD----IIDIDPMAM 350 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTPA--- 491 ++L + WPGNIREL N++ER + S DL PQ Q + ++A Sbjct: 351 SLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNL 410 Query: 492 ------PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE+ G++T A LGISR +L+ Sbjct: 411 KEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 134/455 (29%), Positives = 215/455 (47%), Gaps = 24/455 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ V Q L + L+ F+ + + Sbjct: 6 VLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDGFGL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 QI N ++ A T++A +A G F Y L ++ Sbjct: 66 LEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQSDTV 125 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + +++G SP M V + I A S+A VLI+GE+GTGKEL A+AIH Sbjct: 126 ATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIHY 185 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 ++++PF+ VNC + +SLLE+ELFGYE+GAFTG+ + G FE+AH G Sbjct: 186 --------NSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGAS-SLKVGRFELAHEG 236 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+F DEIGE+ L Q +LLR ++EKE RVGG + + V+VR+++AT+ L++ +++G FR Sbjct: 237 TIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFR 296 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLF+RL+++ +++PPLR+R DI L FL + ++ + + +L+ Sbjct: 297 EDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKE----IKGFSKEAIKLLIG 352 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTP---------AP 492 YDWPGN+REL N++ER + Q + + Sbjct: 353 YDWPGNVRELENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDV 412 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE+ N +T A L I+R + + ++K Sbjct: 413 ERKVILKALEENNWCRTTVAKVLKINRRSLYAKMK 447 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 151/461 (32%), Positives = 224/461 (48%), Gaps = 30/461 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI L + V ++ + A V + + + + Sbjct: 17 ILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPNGDGLEL 76 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAF--SDALDMTRMSLRH 199 + ++ + ++ D A EA G F Y + +R + Sbjct: 77 LKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRALSYASLQ 136 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R+ LR +Y G MLG S M+ + TI A+S + V+I GE+GTGKEL A+AI Sbjct: 137 EENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKELVARAI 196 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + + P + VNCGAI E LLE+ELFG+E+GAFTG+ R R G FE+A Sbjct: 197 H--------FNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRN-RLGRFELAQ 247 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GG++FLDEIG+M LQ ++LRV++EK+ R+GG + + DVR+I+ATH NLE + + R Sbjct: 248 GGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKR 307 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYR++++ + LP LRER ADI LA FL+ + + + + + Sbjct: 308 FREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVT----RFTPEAIACM 363 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTPAP----- 492 LHY WPGN+REL N++E L + DL + Q + + + P Sbjct: 364 LHYPWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFN 423 Query: 493 ------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL K NG K AA L ++RTT +LK Sbjct: 424 DVVYQFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLK 464 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 148/455 (32%), Positives = 226/455 (49%), Gaps = 24/455 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + +A+A E + + F L + + Sbjct: 6 ILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQMDGLTL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 E ++ T ++ A + A EA +G + + Q + Sbjct: 66 LKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLEKRSLR 125 Query: 200 NTHDATRNALRTR-YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 +A R+ +R+R D++G+SPQ++ + I A + A VLI GE+GTGKEL AQA Sbjct: 126 QEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +H+E +K PF+ V+C A++E+LLE+ELFG+E+G+FTG+ + G FE+A Sbjct: 186 LHQE--------SPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGAL-ARKEGRFELA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDEIGE+ +Q +LLRVL+++E RVGG Q + VDVR+++ATH +L +++ G Sbjct: 237 DGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL+YRL+++ + LPPLR+R +D+ L FL+ + +R + Sbjct: 297 RFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQ----VRGLAPGTLQA 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELAR-----ESAKTPAP 492 LL +DWPGNIREL N +ER + + D P ++ P A A Sbjct: 353 LLSHDWPGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGATLAAI 412 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE G + AA LGIS RLK Sbjct: 413 EREAILRTLEMVQGSTSRAAEVLGISVRKIQYRLK 447 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 137/458 (29%), Positives = 223/458 (48%), Gaps = 21/458 (4%) Query: 78 RLSVPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSY 135 +S +L+ V +LAK + V + E + + L + Sbjct: 2 SVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRG 61 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + +++EL ++ + A G + Y + + L + Sbjct: 62 TDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKAL 121 Query: 196 SLRHNTHDATR-NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + + + R + D++ +S M+++ I A + A VLI GE+GTGKE+ Sbjct: 122 AHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEV 181 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH A ++ HP V V+CGA+ E+LLE+ELFG+E+GAFTG++ + G Sbjct: 182 VARAIH--------ALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYR-KKGK 232 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A GGT+FLDEIG++ L QT LLRVL+E+E+ RVGG+QP+ VD R+++AT+ +LE+ Sbjct: 233 FEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKL 292 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +++G FR DLFYRL++ R++LPPLR+R DI L F K ++ + + Sbjct: 293 IEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVT----RVASP 348 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTP-----QFMQLLLPELARESAKT 489 + +L Y WPGN+REL N +ER + + + Sbjct: 349 AMNMLQQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTL 408 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L++ N ++T AA L I R T ++K Sbjct: 409 EDIEKEHILHVLDETNWNQTRAAEMLDIDRVTLHHKIK 446 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 132/453 (29%), Positives = 212/453 (46%), Gaps = 24/453 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAF-QKTFNLRLDQRSYITEEDAR 142 IL+ + + + + L++ V L + L + + ++ Sbjct: 5 ILVVEDEEKLRRVI-ELQLLSAGFDVDKAASAEEGLKIVDRADMVLTDLKLPNMDGQEFL 63 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRHN 200 I ++ ++ A + A EA G + + Sbjct: 64 SLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVRALRE 123 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + + AL RY +++G+SP M+++ I S A VL+ GE+G GK+L A+AIH Sbjct: 124 ENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARAIH 183 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 +K P V +NC AI E+L+E+ELFGYE+GAFTG+ + + G FE A Sbjct: 184 FH--------SPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGA-QTTKPGKFEQADT 234 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIG++P +Q +LLRVL+E+E R+G + +DVR+++AT+ +L ++QG F Sbjct: 235 GTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTF 294 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YRL+++ L +PPLRER DI LA F+ + A L+ Sbjct: 295 REDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTG----CQVESITDAGMEKLM 350 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELA-------RESAKTPAPR 493 Y WPGN+REL N++ER + + + P E Sbjct: 351 AYHWPGNVRELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYE 410 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++AL + +G+K+ AA LG++R RL Sbjct: 411 QEIIREALRRADGNKSQAARLLGLTRNALRYRL 443 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 233/471 (49%), Gaps = 39/471 (8%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQRSYITEED 140 +ILI + ++ + + +E + + F L + I + Sbjct: 6 IILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNINGVE 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 +I E N V+ D A E G + Y + ++ + + Sbjct: 66 LIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALRRQGL 125 Query: 201 THDATRNALRTRYVLGD-----MLGQSPQMEQVRQTILLYARSSAA-VLIEGETGTGKEL 254 + ++ + ++G SPQM+++ I A+SS+ VLI+GE+GTGKEL Sbjct: 126 RQEVL-EIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKEL 184 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+HR +KS FV +NC A+ ESLLEAELFGYE+GAFTG+ G+ GL Sbjct: 185 VARAVHR--------LSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGL 236 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FEIA GT+FLDEIGEM + LQ +LLR+L+E++ RVGG Q + +DVR+I++T+ NLEE+ Sbjct: 237 FEIADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEE 296 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + G FR+DL+YRL +L + +PPLRER DI+ L + F+ + Sbjct: 297 IASGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGK----NICDIPPD 352 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSV------------------EPTPDLTPQFMQ 476 +E +LL Y WPGNIREL+N++ER L + E +T Sbjct: 353 TERILLEYGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNT 412 Query: 477 LLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++ + L++ + +T AA LGI+RTT + ++K Sbjct: 413 DCVSSDGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIK 463 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 150/455 (32%), Positives = 230/455 (50%), Gaps = 20/455 (4%) Query: 75 LKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRS 134 ++ ++ + V+ S +LQAL + ++ + + + + L + + Sbjct: 2 IRGKIDILVVDDDVSHCTILQALLRGWGYNVALAY-SGHDALAQVREKVFDLVLCDVRMA 60 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 + +I L ++ A + A EA G Y + Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 ++ T +A ++ M+G SP M+ + I + A S A VLI G++GTGKEL Sbjct: 121 LAHTRETGAELPSASAAQF---GMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKEL 177 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+H A + P V +NC A+ ESLLE+ELFG+E+GAFTG+ + R G Sbjct: 178 VARALH--------ACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGR 228 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 F A GGTLFLDEIG++ +Q RLLR ++E+EV RVG +Q + VDV +I+ATH +L E+ Sbjct: 229 FVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEE 288 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + GRFR+DL+YRL+++ +++P LR+R DI LA+ FL+ A++ Sbjct: 289 VSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK----AVKGFTPQ 344 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP---ELARESAKTPA 491 + +L+HYDWPGNIREL N +ER + L+ E + P E + E Sbjct: 345 AMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVD 404 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ALEK G+KT AA LGI+R T +L Sbjct: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 146/478 (30%), Positives = 224/478 (46%), Gaps = 48/478 (10%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + L+KA K ++ + + + + ++ D Sbjct: 6 ILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLDL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN- 200 +I E+K++ ++ A A EA G + Y DA+ R Sbjct: 66 LDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREIA 125 Query: 201 -THDATRNALRTRYVLG-DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + L+ Y + +++G S M+ + +TI A S +LI+GE+GTGKE+ A+A Sbjct: 126 GQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH G+ PFVA+NC AI LLE+ELFG E GAFTG+ + G FE A Sbjct: 186 IH--------FNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASER-KQGKFEQA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 + GT+FLDEIG+MPL LQ ++LRVL+E EVTRVGG Q + V+VR+++AT+ L+E ++Q Sbjct: 237 NQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQR 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL+YRL+++ + L PLRER DI L FL + LS P +Q + + Sbjct: 297 EFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIP----PKQLTPEAMAL 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAK---------- 488 L + WPGN+REL N ++R + + + +Q E A Sbjct: 353 LSRHSWPGNVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAK 412 Query: 489 --------------------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + LEK ++ AA+ LGI+R T +++ Sbjct: 413 LRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKI 470 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 139/450 (30%), Positives = 221/450 (49%), Gaps = 18/450 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ V ++L + + + + + L + + + + + + Sbjct: 8 ILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMPGMDGLQV 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDA--LDMTRMSLRH 199 +L+ ++ A D A A G + Y + Sbjct: 68 LEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKIVSQQSLV 127 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R AL+ Y D+L +SP M+ V + ARS++ +L+ GE+G+GKE+ A+A+ Sbjct: 128 RENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVLARAV 187 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A + PFVAV+C A+ ESLLE+ELFG+E+G+FTG+ R G FE AH Sbjct: 188 H--------AESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAI-SRRKGKFEAAH 238 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDE+G++ LQ LLRVLEE+ RVGG++P+ VDVR+I+AT+ +L +G+ Sbjct: 239 GGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGK 298 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++ + +PPLRER DI L E+F++ + + + L Sbjct: 299 FREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRR----IEGVSPDAMGAL 354 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQ 498 + +DWPGN+RELRN++ER A+ + +L A Sbjct: 355 MAHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLASLEEVEKRHVA 414 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L NG+ + +A LGI R T + +++ Sbjct: 415 AVLAHANGNVSQSARILGIDRVTLYNKMRK 444 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 139/467 (29%), Positives = 215/467 (46%), Gaps = 35/467 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ L L G E + + + L + + + +A Sbjct: 5 LLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGGMEA 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 I E ++ A + A A +G + Y + Sbjct: 65 LSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHLRLA 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 ++ R L V +++G+SP M ++ I + A + A VL+ GE+GTGKEL A+A+ Sbjct: 125 RENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVAKAL 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A + P VAVNC A+ E+LLE+ELFG+E+GAFTG+ R R G F A Sbjct: 185 H--------AGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERR-REGRFMAAD 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G++FLDEIGE+ +Q +LLRV++E+E+ RVGG +PV VDVR+++AT+ +L+++++ GR Sbjct: 236 KGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGR 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + +PPLRER DI LA+ FL ++ A+ L Sbjct: 296 FREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKR----IKGFTPAAMDHL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE------------------ 481 L WPGN+REL N +ER + E + + Sbjct: 352 LRCPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDM 411 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L G+K+ AA LGI+R T ++LK Sbjct: 412 AGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRATLHKKLKK 458 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 150/456 (32%), Positives = 224/456 (49%), Gaps = 24/456 (5%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ-ETIPALVAFQKTFNLRLDQRSY 135 ++ + V+ S +LQAL + + + + + + L + + Sbjct: 4 EQVDILVVDDDISHCTILQALLRGWGY--RVALANNGLQALEKVREKVFDLVLCDIRMAE 61 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + +I + ++ A D A EA +G Y + + Sbjct: 62 MDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + ++ M+G SP M + I L A S A VLI GE+GTGKEL Sbjct: 122 AHTRLSESPVTETPAAQF---GMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELV 178 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+A+H A + P V +NC A+ ESLLE+ELFG+E+GAFTG+ + R G F Sbjct: 179 ARALH--------ASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKR-REGRF 229 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 A GGTLFLDEIG++ +Q RLLR ++E+EV RVG +Q + VDVR+I+ATH +L E++ Sbjct: 230 VEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEV 289 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 GRFR+DL+YRL+++ + +PPLR R DI PLA FL+ A++ + Sbjct: 290 SAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRK----AVQGFTPQA 345 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQ----LLLPELARESAKTP 490 +L+HY WPGNIREL N +ER + L+ E + P + P Sbjct: 346 MDLLIHYAWPGNIRELENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLV 405 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ALE+ G+KT AA LGI+R T +L Sbjct: 406 EVEKEAILAALERTGGNKTEAARRLGITRKTLLAKL 441 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 138/461 (29%), Positives = 215/461 (46%), Gaps = 32/461 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + + L K + V Q+ + L + + + Sbjct: 30 ILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGFGL 89 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + E A+ ++ A + A +A G + Y + + + Sbjct: 90 LDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDLR 149 Query: 202 HD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + L R+ +++G+S M+ V I + S VLI GE+GTGKEL A+AI Sbjct: 150 RENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAI 209 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + PFVA+ CGAI E+LLE+ELFG+E+GAFTG+ + + GLFE+A Sbjct: 210 HY--------NSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQ-KQGLFEVAD 260 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEI E+P +Q +LLRV++E E +VGG + + VDVR+++AT+ +L + + + + Sbjct: 261 GGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQ 320 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++++ LPPLR+R DI L FL+ Sbjct: 321 FREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLT-------PGFSTTIPDGVMRRF 373 Query: 440 LHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFMQLLLPELARESAKTPAP------ 492 L Y WPGNIREL N +ER + E T D P M + ++ + P Sbjct: 374 LDYHWPGNIRELENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQLTELPEEGLDLDD 433 Query: 493 -----RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +AL++ G + AA L I+ + RL Sbjct: 434 YLGAIEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAK 474 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 133/463 (28%), Positives = 225/463 (48%), Gaps = 29/463 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI ++ ++ + V + Q+ + +L + + + Sbjct: 1 MARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMS 196 D + E+ ++ A + A EA G + Y + Sbjct: 61 LDILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQ 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + R ++ +Y +++G S +M+++ I A + + +LI+GE+GTGKEL A Sbjct: 121 SLVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H ++ PFVA+NC A+ E+LLE+ELFG+++G+FTG+ + + GLFE Sbjct: 181 RALH--------FNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQD-KIGLFE 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGT+FLDE+ M PLQT+LLRVL+E+++ RVG + VP++VRV++AT+ L + ++ Sbjct: 232 EAEGGTIFLDEVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIK 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FR DL+YRL+++ +++P LRER DI L FL+ + A ++ + Sbjct: 292 GGNFREDLYYRLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTE----AKKIDPKAI 347 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTP---- 490 +L Y WPGN+REL N +ER DL PQ ++ S P Sbjct: 348 EMLAKYRWPGNVRELENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQT 407 Query: 491 ------APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ ++ + AA LGIS T +R+L+ Sbjct: 408 LDEYIREQERRYIEETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 141/466 (30%), Positives = 209/466 (44%), Gaps = 32/466 (6%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEE 139 +L+ + L+ A + L + + + Sbjct: 3 HNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGP 62 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 G+I + V+ A A ++ G + Y A D + R Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQFRD 122 Query: 200 NT--HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + R L + ++G SP +V Q + S+A +L+ GE+GTGKE+ A+ Sbjct: 123 ILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGKEMVAR 182 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH+ + PFVAVNC AI E LLE+E+FG+ +GAFTG+ R G F+ Sbjct: 183 AIHKHG--------NRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVAD-RVGRFQQ 233 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GTLFLDE+G+MPL LQ ++LR L+E+ + VG + VDVRVI+AT+ NL E + Sbjct: 234 ADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVAN 293 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YRL++ + LP LRERV DI LA F +L A + + Sbjct: 294 KEFREDLYYRLNVFPIPLPALRERVEDIALLARHF----AHSLGATAGKRISGFSPEALQ 349 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARES---------- 486 + Y WPGNIREL+N +ER + + + + P ++ + S Sbjct: 350 AMASYAWPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVP 409 Query: 487 ----AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 A AL++ NG + AAA +GIS +FW RLK Sbjct: 410 SDLEAALAEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKK 455 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 146/451 (32%), Positives = 218/451 (48%), Gaps = 17/451 (3%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ L + E + L + L + I Sbjct: 1 MKKILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 +++ V+ A + A EA G F Y V + + Sbjct: 61 LATLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQK 120 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + + +++G+S M+++ I L A S A +L+ GE+GTGKEL A A Sbjct: 121 ISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATA 180 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IHR +K + +NC A+ E+LLE+ELFG+E GAFTG+ + + GLFE A Sbjct: 181 IHRH--------SKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQ-KKGLFERA 231 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GTLFLDEIG+M L Q ++LRVL+E E RVGG+ + V+VR+I+A+H NLE+ +++G Sbjct: 232 DKGTLFLDEIGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEG 291 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR+DLF+RLS++ L LP LRER+ DI LA FL + ++ Q + + Sbjct: 292 TFRQDLFFRLSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKD----IKGFSQEALDL 347 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPRLLT 496 L+ Y WPGNIREL N +ER + E +L PQF + P Sbjct: 348 LMEYPWPGNIRELENSIERGVILCLGEQITAHELPPQFFRNRSPGELSSRDTLRDVEKRA 407 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 QQAL + +K+A A LGI+R T +++ Sbjct: 408 IQQALARSGFNKSATAKQLGIARQTLLNKIR 438 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 149/459 (32%), Positives = 205/459 (44%), Gaps = 27/459 (5%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEED 140 IL+ + L + + ++ I + L + I + Sbjct: 7 HILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKIDGIE 66 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAF--SDALDMTRMSLR 198 Q+ N V+ A + +A G + Y Sbjct: 67 VLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRFFEQQKL 126 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 ++G SP M++V +TI L A S A VLI GETGTGKEL A+ Sbjct: 127 STKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGKELVAET 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH P V VNC A+ E+LLE+ELFG+E+G+FTG+ R R G FE+A Sbjct: 187 IHY--------NSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQ-RKGRFELA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 H GT+FLDEIGEM L Q +LLRVL+E+E RVGG + VD RVI+AT+ LEE++ G Sbjct: 238 HKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAG 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 +FR DLFYRL+++ + LPPLRER DI L + FL+ A + + V Sbjct: 298 KFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKH--RYHKDGPPAS--ISEEAIKV 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA------- 491 L+ +DWPGN+REL N +ER + F Q+ S Sbjct: 354 LMEHDWPGNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEA 413 Query: 492 ---PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALEK GD AA L IS + R+L+ Sbjct: 414 MRIIESKIILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 147/458 (32%), Positives = 220/458 (48%), Gaps = 30/458 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + + L + + + +E + T + + + Sbjct: 11 VLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQL 70 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 ++ E + V+ A + A EA G + + + M Sbjct: 71 LREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQGLS 130 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R L R ++G SP ME+V + I A + A VLI GE+GTGKEL A+AI Sbjct: 131 RENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVARAI 190 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H R +++ PFVA+NC AI LLE+ELFG+ +GAFTG+ + + G F A Sbjct: 191 HN--------RSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQD-KEGKFRQAE 241 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDE+GE+P+ LQ++LLR L+EKEV VGG + +DVRV++AT+ +LEE + +GR Sbjct: 242 AGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGR 301 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRLS++ + LPPLRER DI L F A V+ Sbjct: 302 FREDLFYRLSVIPVHLPPLRERKEDIPLLVRHFAAKH--------GGASVTFSPEILAVM 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPE--------LARESAKTP 490 Y WPGN+REL N +ER+ + + + PD P+ ++ L E Sbjct: 354 AAYGWPGNVRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLE 413 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +ALE+ N ++++AA +L I R T R++ Sbjct: 414 QLEREIVVEALERNNWNQSSAARFLRIPRHTLIYRMEK 451 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 550 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 147/454 (32%), Positives = 220/454 (48%), Gaps = 23/454 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + AL +E + L F L + + + Sbjct: 15 ILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDGINL 74 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + E ++ ++ A + A EA G Y + + + Sbjct: 75 LRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKLRLQ 134 Query: 202 HD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 D R +R RY +++G +P++ V + + A + A VLI GE+GTGKEL AQA+ Sbjct: 135 RDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQAL 194 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H E + F+ VNC A++E+LLE+ELFG+E+GAFTG+ G + G FE+A Sbjct: 195 HEE--------SPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAI-GRKEGRFELAD 245 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG++ LQ +LLRVL+++E RVGG Q + VDVR+++AT+ +L +++ GR Sbjct: 246 GGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGR 305 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + LPPLR+R DI L F+ A +R + + Sbjct: 306 FREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKD----IRGLAPGTLNAV 361 Query: 440 LHYDWPGNIRELRNMMERLALFLSV-EPTPDLTPQFMQLLLPELARESAKTP-----APR 493 L +DWPGN+REL N++ER + E T D P ++ P A P Sbjct: 362 LSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEIE 421 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE G + AA LGIS RLK Sbjct: 422 REAILRTLEMVGGSTSRAAEILGISVRKIQYRLK 455 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 134/467 (28%), Positives = 220/467 (47%), Gaps = 33/467 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITE 138 + +LI V + L + + Y + + + L + Sbjct: 1 MSKVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMS 196 + ++ ++ ++ A T++A +A G Y + + +M Sbjct: 61 IEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQ 120 Query: 197 LRHNTHDATRNAL-RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + R L + + +GQS M+ V +TI S VLI+GE+GTGKE+ Sbjct: 121 RLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVV 180 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+ IH + + S PF+ +NC I E L+E+ELFG+E+G+FTG+ +AG F Sbjct: 181 ARTIH--------SNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAV-SQKAGKF 231 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 EIAH G +FLDEIGE+PL Q +LLRVL+EKE RVGG + + VDVR+++AT+ NLE+ + Sbjct: 232 EIAHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMV 291 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 Q+G+FR DL+YRL+++ ++LPPLRER DI L F+K + + Q + Sbjct: 292 QEGKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNK----NISGISQEA 347 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQF--------------MQLLLP 480 Y WPGN+RE++N+ E+ + D P + L Sbjct: 348 MIFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTN 407 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++L + N ++ A LG++R + + ++K Sbjct: 408 DKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMK 454 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 151/453 (33%), Positives = 231/453 (50%), Gaps = 20/453 (4%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 ++ + V+ S +LQAL + ++ + +E + L + + + Sbjct: 4 EKIDILVVDDDVSHCTILQALLRGWGYNVALAY-SGREALEKASGHVFDLVLCDVRMAEM 62 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 + +I L ++ A + A EA TG Y + ++ Sbjct: 63 DGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKSLA 122 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + ++ M+G+SP M+Q+ I + A S A VLI G++GTGKEL A Sbjct: 123 HAQEVAGELPSVSASQ---SGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVA 179 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H A + P V +NC A+ ESLLE+ELFG+E+GAFTG+ + R G F Sbjct: 180 RALH--------ASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFV 230 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGTLFLDEIG++ +Q RLLR ++E+EV RVG +Q + VDVR+I+ATH +L ++ Sbjct: 231 EADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEAS 290 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 GRFR+DL+YRL+++ ++ P LR+R DI LAE FL+ A A++ + Sbjct: 291 AGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRK----AVKGFTPQAM 346 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARES-AKTPAPR 493 +L+HY WPGNIREL N +ER + L+ E +L +P + ++ Sbjct: 347 DLLIHYAWPGNIRELENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVE 406 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ALEK G+KT AA LGI+R T +L Sbjct: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 150/455 (32%), Positives = 226/455 (49%), Gaps = 22/455 (4%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEE 139 P +L+ + L L + + +GV + + + L + + + Sbjct: 4 PKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGMGGL 63 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM--TRMSL 197 +I + ++ VV A A A G Y A V + + Sbjct: 64 SLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLREKQQ 123 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + + L+ +Y +++G SPQM ++ + I A S+A+VLI GETGTGKEL A Sbjct: 124 LVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAH 183 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH R + PFVA++C A++E +LE+ELFG+E+GAFTG+ + R G FE+ Sbjct: 184 AIHY--------RSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQS-RKGRFEL 234 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDE+ EM L +Q +LLRVLE+ E RVGG + + VDVR I+AT+ NLEE++ + Sbjct: 235 ADGGTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSE 294 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR DLFYRL+++ +Q+PPLRER DI L+ F + + ++ + Sbjct: 295 GRFREDLFYRLNVINIQMPPLRERKDDIPILSNYF----AVKYAKKYKKEIKGFDPEAIK 350 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELA----RESAKTPAP 492 LL + W GNIREL+N +ER + + D P+ + + Sbjct: 351 ALLSHHWQGNIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEA 410 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q+ L+ NG K +AA LGIS + K Sbjct: 411 EKEIIQRTLQITNGSKQSAAKILGISTRKIEYKTK 445 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 143/452 (31%), Positives = 224/452 (49%), Gaps = 22/452 (4%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL L+A++ + T +E + L L + + Sbjct: 1 MANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 D + + + ++ A + A EA G + Y V + + Sbjct: 61 IDLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKS 120 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + +++G+S ++++ + + A S+A VLI GE+GTGKEL A+A Sbjct: 121 KGIQKLEKIET----PFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARA 176 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH+ +KS PF+ V+C I E+LLE+ELFG+E+GAFTG+ + GL E+A Sbjct: 177 IHK--------NSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATER-KTGLIELA 227 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 + GT+FLDEIGE+P+ LQ +LLR L+EKE+ R+G Q + VDVRVISAT+ +LE+ +++G Sbjct: 228 NEGTVFLDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEG 287 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL++RL+++R+ LPPLRER DI L FL + P + Q Sbjct: 288 SFREDLYWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKP----IPQLEPEVMNA 343 Query: 439 LLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLL--PELARESAKTPAPRLL 495 L++Y WPGNIREL N++ER + S + P+ +Q + + Sbjct: 344 LINYYWPGNIRELANVIERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKA 403 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL ++T AA LGISR ++K Sbjct: 404 LILKALNSTGWNQTKAAEILGISRKQLRTKMK 435 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 137/472 (29%), Positives = 222/472 (47%), Gaps = 41/472 (8%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + +L+ ++ + LA + V ++ + + + Sbjct: 1 MAKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 + G I + ++ A D A +A G F Y QA ++ Sbjct: 61 MEVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTN 120 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + R ++ R ++G S +++V + I A + + VLI GE+GTGKEL A A Sbjct: 121 ESARRSVRPDVKAR---AAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATA 177 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +H ++ PF+ +NC AI +LLE+ELFGYE GAFTG+ + G FE+A Sbjct: 178 LHGA--------SSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTS-KPGRFELA 228 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GTLFLDEIGE+P+ +Q +LLR ++E E RVGG + VDVR+++AT+ +L+ +++ G Sbjct: 229 DEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAG 288 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR+DL+YRL+++ + LP LRER +D+ LA F++ L+ + + + Sbjct: 289 RFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNKK----IEGIADDAMAL 344 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARES----------- 486 L Y WPGNIREL N++ER+ LF P+ ++ A + Sbjct: 345 LQGYAWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVP 404 Query: 487 -----------AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 K + LE+ G+ T AA L ISR + ++K Sbjct: 405 TGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMK 456 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 139/463 (30%), Positives = 211/463 (45%), Gaps = 21/463 (4%) Query: 72 GAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLR 129 + + +L+ ++ A + + + L Sbjct: 19 APRIAEPPTGGKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLT 78 Query: 130 LDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA--FS 187 + + + + + V+ A + A EA G + + A +++ Sbjct: 79 DLRMPTVDGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLL 138 Query: 188 DALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGE 247 + R RY L ++G+SP M +V +L A + A VL+ GE Sbjct: 139 RVAKALEKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGE 198 Query: 248 TGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSR 307 +GTGKEL A+A+H + PFV VNC AI ++LLE+ELFG+ GAFTG+ Sbjct: 199 SGTGKELVARALH--------VTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGAT 250 Query: 308 RGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 367 R R G+FE A+GGTLF+DEIGE Q +LLR L+E E+ RVG PV V+VR+I+AT Sbjct: 251 RA-RRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAAT 309 Query: 368 HCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAA 427 + +L + + RFR DLFYRL+++ L++PPLRER D+ LA FL+ + + Sbjct: 310 NQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE---- 365 Query: 428 LRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR--- 484 R + L+ +DWPGN+REL N++E+ A + Q P Sbjct: 366 -RVLTPEAVASLVAHDWPGNVRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVT 424 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + AL + D A LGIS TT WR++K Sbjct: 425 LADAVEDTERRAITAALARCGNDLGRVARDLGISGTTLWRKMK 467 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 217/461 (47%), Gaps = 28/461 (6%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 ILI + L L + + + + L + + + +T Sbjct: 6 HILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPKVTGRQ 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLR 198 ++ + ++ A + A E G F Y + + ++ Sbjct: 66 VLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNAVELARA 125 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 H + + + RY + ++G+S + V + A S + VLI GE+GTGKEL A+A Sbjct: 126 HRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH +K +PFV+VNC A+ +LE+ELFG+E+G+FTG+ R G FE A Sbjct: 186 IHYT--------SPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAV-AMRRGRFEQA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDEI E+ LQ +LLRVL+E+ RVGG + + VD+RV++AT+ +L +++G Sbjct: 237 DGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL+YRL+++++ LPPLRER DI L F+ + P + + Sbjct: 297 TFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMP----AKTFSTEALNY 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLL----------LPELARESA 487 L Y+WPGNIR+L N++E + + D P ++ LP + Sbjct: 353 LTGYEWPGNIRQLENVVESCLVLVPGTVINVDNLPAEIRDEESQFKSAVDLLPVQLDLAD 412 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++AL + + + AA YLGIS++ +LK Sbjct: 413 TLEKIEAALIRRALVRADLVQVKAAEYLGISKSLLQYKLKK 453 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 143/461 (31%), Positives = 222/461 (48%), Gaps = 29/461 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPAL-VAFQKTFNLRLDQRSYITEED 140 IL+ + ++L A K V + + I L + + + + Sbjct: 7 ILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKKVNGLE 66 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLR 198 + V+ A A +A G + Y R + A + Sbjct: 67 VLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALEKKEL 126 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 +R +Y L ++G S M +V + +R+ + VLI GE+GTGKEL A+A Sbjct: 127 KERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKELIARA 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + +PFV +NCGA+ E+L E+ELFG+ +G+FTG+ + + GLF A Sbjct: 187 IHY--------NGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKE-KVGLFHHA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 H GT+FLDEIGE Q +LLR L++ E+ +VGG++ + VDVR+I+AT+ NLE + QG Sbjct: 238 HKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQG 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR+DLFYR++++R+ LP L+ER DI L FL++ L R ++ V Sbjct: 298 RFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDK----RVFSGSAMAV 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARES----------A 487 LL+YDWPGNIREL+N++ER + + P + + Sbjct: 354 LLNYDWPGNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVE 413 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A+ K+ G++T + LGIS TT WR++K Sbjct: 414 TLSEQEKNAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKK 454 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 142/477 (29%), Positives = 219/477 (45%), Gaps = 46/477 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ ++ + L+ +E + L + + + D Sbjct: 8 ILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDGMDL 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + ++ A D A EA TG F Y Q + + R Sbjct: 68 LRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTRDLA 127 Query: 202 HDATRNALRTRYVLGD-----MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + G ++G+SP ++++ + A + VLI GE+GTGKEL A Sbjct: 128 SADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESGTGKELVA 187 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H G++ PF+ VNC AI + L+E+ELFGYE GAFTG+ + G FE Sbjct: 188 RALHE--------NSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAV-ASKPGRFE 238 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGTLFLDEIGE+P +Q +LLRVL+E E RVGG + + VDVR+++AT+ +L+ ++ Sbjct: 239 LASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIA 298 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FR DLFYRL+++ + LP LR+R +DI L F+ A L ++ + Sbjct: 299 AGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKK----SIESIEPEAL 354 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQ------------------- 476 L + WPGNIREL N++ER LF D P+ ++ Sbjct: 355 ERLASHAWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAAD 414 Query: 477 ----LLLPELARE--SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P+ +E A ++AL++ +G+ T AA L ISR ++K Sbjct: 415 TSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMK 471 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 135/453 (29%), Positives = 222/453 (49%), Gaps = 23/453 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ L+ L K G + E + + + L + + + Sbjct: 4 VLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGFEI 63 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 + L + ++ + A A G F Y A + L+ + Sbjct: 64 LRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVKLK 123 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 R L + +++ Q+ +M ++ + A + VLI GE+GTGKEL A+ I Sbjct: 124 KEVKQLRQQLDFHEKV-NIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYI 182 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K PF+AVNCGA +E LL ELFG+E+GAFTG+ + GL E+A Sbjct: 183 H--------LNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGAN-ALKKGLIEMAS 233 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G+LFLDEI EM L +Q +LLRV++E+E R+G +P+ VDVR I+AT+ +++E+++ G+ Sbjct: 234 SGSLFLDEITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGK 293 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ +++PPLRER DI L F K + + + + +L Sbjct: 294 FREDLYYRLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEIT----GVSEEAINLL 349 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESA----KTPAPRL 494 ++Y++PGN+REL N++ER + + + PQ ++ L E+ + Sbjct: 350 VNYEYPGNVRELENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEK 409 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L + +KT AA LGI R + WR+LK Sbjct: 410 EYIKWILREVGNNKTVAAQILGIDRVSLWRKLK 442 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 140/493 (28%), Positives = 221/493 (44%), Gaps = 53/493 (10%) Query: 75 LKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVT-YQETIPALVAFQKTFNLRLDQR 133 + P IL+ D L A K + + +E + L + + + Sbjct: 1 MTQHADYP-ILVVDDEQDNLDAFRFNFKRAFRLLCASSGEEALEILRDNEVAVIVTDQRM 59 Query: 134 SYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTG-IFIYSAATVRQAFSDALDM 192 +T + + E++ + ++ A D+ +A G I+ Y + Sbjct: 60 PRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILT 119 Query: 193 TRMSLRHNTHDATR-------------NALRTRYVLGDMLGQSPQMEQVRQTILLYARSS 239 + + R + + G+++G S + +V + A ++ Sbjct: 120 HALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTN 179 Query: 240 AAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYE 299 + VL+ GETGTGKEL A AIH +++ PFV VNC A+A +LE+ELFG+E Sbjct: 180 STVLLRGETGTGKELVAHAIH--------INSSRENQPFVRVNCAALAPGVLESELFGHE 231 Query: 300 EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 359 +GAFTG+ R G FE+A GGTLFLDE G++P+ +Q +LLR L+E+E RVGG Q + V Sbjct: 232 KGAFTGAVAQ-RPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKV 290 Query: 360 DVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAA 419 DVRVISAT+ +LE ++ G FR DL+YRL++ + LPPLR+R+ D+ L F+ Sbjct: 291 DVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFA-- 348 Query: 420 LSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLL- 478 A+ L Y WPGN+REL N++ER + F + Sbjct: 349 --RSGMTRTPGVRGAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQ 406 Query: 479 -----------------------LPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYL 515 E + + A+EK N + +AA L Sbjct: 407 NATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARML 466 Query: 516 GISRTTFWRRLKS 528 GI+R+T + R++ Sbjct: 467 GINRSTLYYRMRK 479 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 540 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 154/464 (33%), Positives = 223/464 (48%), Gaps = 26/464 (5%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTY-QETIPALVAFQKTFNLRLDQRSY 135 P +LI L A + + L L + Sbjct: 3 RENDFPKLLIIEDEKRTRMGLVMALGEEFDTYEASDLSSAMAILENEPIDIVLADIRLGK 62 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRM 195 + + ++ L + A + A EA G + Y + + Sbjct: 63 ESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLKRIY 122 Query: 196 SLRHNTHD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 R + + L +Y L ++G S M+ V + I A S A VL+EGE+GTGKE Sbjct: 123 QSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGKE 182 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A AIH+ +K+ PFV V+C A++ LLE+ELFG+E+GAFTG+ R G Sbjct: 183 LVAHAIHQ--------LSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIER-RIG 233 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FE A GTLFLDEIGE+ LP Q +LLR L EK + RVG ++ V VDVRVI+AT+ NLE+ Sbjct: 234 RFEEAARGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEK 293 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 +++G+FR DLF+RL+++R+ +PPLRER DI LA++FL A + + Sbjct: 294 MVEEGKFREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKK----IDRLSP 349 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESA----- 487 + +LL YDWPGN+REL+ +E + E P P+ +++ P L+ + Sbjct: 350 EAMKILLEYDWPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSE 409 Query: 488 ----KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL G KT+AA LGISR T R++K Sbjct: 410 PDCFNLKEAEKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIK 453 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 145/449 (32%), Positives = 228/449 (50%), Gaps = 22/449 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK---TFNLRLDQRSYITEED 140 ILI D+L + K + T + AL + L ++ + Sbjct: 5 ILIVDDDRDILNLMKLKLKNYGY-TIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLE 63 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 ++ E ++ A + A A G F Y + + + + Sbjct: 64 FIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSDL 123 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + N L++ D++ +SPQM+QV +T A VLI GE+GTGKE+ A IH Sbjct: 124 KKEL--NELKSLLS-TDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIH 180 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + +K PF+A+NCGAI LLE+ELFGY++GAFTG+ + GL E A G Sbjct: 181 K--------NSLRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTD-KKGLIEEAEG 231 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIGE+PL LQ +LLRVL+E E+ +G ++P +DVR I+AT+ +L++ +++G+F Sbjct: 232 GTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKF 291 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YR++++ + +PPLRER DI+PLA+ F+ + P ++ + + LL Sbjct: 292 REDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPK----KRLSEKAREKLL 347 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQL--LLPELARESAKTPAPRLLTPQ 498 +YD+ GN+REL N++ER L E D+ + L EL + Sbjct: 348 NYDYKGNVRELENIIERAVLTTEGEEITDIPVTVSKRYILSQELKPFKEAKKEFEESYLK 407 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRLK 527 LEK + + + A+ GI+R +R +K Sbjct: 408 NLLEKTDFNISKASKIAGITRAQIYRMIK 436 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 131/456 (28%), Positives = 206/456 (45%), Gaps = 25/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 I+I + + + + + L + + + + Sbjct: 5 IIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLTL 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 I + ++ A A +A G F Y A + + Sbjct: 65 LKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFRTLE 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 ++ + ++ S M+++ I A++ VLI+GE+GTGKEL A AI Sbjct: 125 KEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANAI 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 + +K P++ +NC AI E+L E+ELFGYE+GAFTG+ + G FE+A+ Sbjct: 185 --------QKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATET-KKGKFELAN 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+F DEIG+MPL LQ +LLRV+E+ V R+GG +P+ ++VR I AT NL+E ++ + Sbjct: 236 GGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEK 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYR++++ + +PPL+ER DI L E FLK+ ++ L Sbjct: 296 FREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNIT----ISPSAYEAL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLP-------ELARESAKTPA 491 L YD+PGN+REL++ +ER L P+ L Sbjct: 352 LSYDYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECIEN 411 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL++ KT AA LGISR W ++K Sbjct: 412 FEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIK 447 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 136/463 (29%), Positives = 212/463 (45%), Gaps = 31/463 (6%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 +L+ ++ LA + + + F L + + Sbjct: 10 NVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDGLA 69 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLR 198 E + T ++ A D A EA G + Y + + + Sbjct: 70 FLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERERL 129 Query: 199 HNTHDATRNA---LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + A R L Y G ++ +S M+ V I A VL+ GE+GTGKEL Sbjct: 130 KRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKELV 189 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+++H + + + VNCG I E+LLE+ELFG+ +GAFTG+ + + GL Sbjct: 190 ARSLH--------FNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKN-KTGLC 240 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 EIAH GTLFLDEIGE+P LQ +LLR+L+++E+ VG +D+R+++AT NLE D+ Sbjct: 241 EIAHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADV 300 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 +G FR DLFYRL++L + LPPLR+R DI L E+F++ L + A+ Sbjct: 301 AEGVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDK----TITGLAPAA 356 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARES-------- 486 + LL + WPGN+REL N++ER + + PD P ++ Sbjct: 357 LSRLLAHTWPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYS 416 Query: 487 --AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 A ++AL K G++T + L IS + ++K Sbjct: 417 IKAAQKIFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMK 459 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 144/459 (31%), Positives = 209/459 (45%), Gaps = 25/459 (5%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVT--YQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + LA + E I + + + + Sbjct: 1 MKKILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA--FSDALDMTRMS 196 + + + + + V+ A EA G F Y A A S + Sbjct: 61 LEVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQT 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 R + +++ SP M V I + A++ ++V+I GE+GTGKEL A Sbjct: 121 AHVEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 A+H R + PF+ VNC AI E+LLEAE+ GYE+GAFTG+ + + G E Sbjct: 181 NAVHN--------RSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQR-KKGKLE 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGT F DEIG+M PLQ +LLRVLE + RVGG +PV VD+R I AT L ++++ Sbjct: 232 TADGGTFFFDEIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIR 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G+FR DL+YR+++L + LPPLRER DI L F+ + + Sbjct: 292 KGKFREDLYYRINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQ----VLDIAPEAM 347 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP-------ELARESAK 488 +L Y +PGN+REL++ +E F S P P ++ P + + Sbjct: 348 ELLRSYPYPGNVRELKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESS 407 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 T L+K G K AAA LGISR T WR+LK Sbjct: 408 RKETERQTIINVLKKTGGRKMAAAKALGISRETLWRKLK 446 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 137/460 (29%), Positives = 212/460 (46%), Gaps = 27/460 (5%) Query: 83 VILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 IL+ G + L + +E + ++ L + + Sbjct: 5 NILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDGMQ 64 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRMSLR 198 ++ L ++ A + A +A G Y + L + Sbjct: 65 VLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAERRTL 124 Query: 199 HNTHDATRNALRTRY-VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 ++ R L+ + ++ S +M + A S A VL++GE+GTGKEL A+ Sbjct: 125 IRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKELLAR 184 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 IH+ + + P + VNCGA+ ESL+E+ELFG+E+GAFTG+ R G FE Sbjct: 185 LIHQ--------LSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGAT-SRRIGRFEE 235 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDEIGE+ +P+Q +LLR L+E+E RVGG+ + DVR+ISAT+ +LE +++ Sbjct: 236 ADGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKE 295 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 +FR DL+YRL+++ + +PPLRER DI L + FL+ A S + Sbjct: 296 EKFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKIS----GISSEARD 351 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPT---------PDLTPQFMQLLLPELARESAK 488 +L+ YD+PGN+REL N++ER + E L + R Sbjct: 352 LLMKYDYPGNVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGA 411 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 Q A+EK +T AA LG+S +LK Sbjct: 412 IENLEKQMIQDAMEKAGDHQTRAAEMLGLSERMLRYKLKK 451 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 138/458 (30%), Positives = 219/458 (47%), Gaps = 23/458 (5%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPAL-VAFQKTFNLRLDQRSYIT 137 + IL+ + + + K V + I + + L + Sbjct: 1 MKKILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMD 60 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRM 195 +I ++ + V+ + A EA G Y + + +M Sbjct: 61 GIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQM 120 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 D R+ L +Y G+++G+SP+++++ I + + A +LI+GETGTGKEL Sbjct: 121 QRLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELV 180 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH + +H FV V+C ++ E+LLE+ELFG+E+GAFTG+ + R G F Sbjct: 181 AKAIHY--------NSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKD-RVGRF 231 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 A GT+FLDEIG + L +Q +LLRVL++ E VG + + VDVR+I+AT+ +LE + Sbjct: 232 RKADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCV 291 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 ++G FR DLFYRL+++R+ LPPLRER DI LA FL + + + + + Sbjct: 292 EKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAHFLAIH----NKKNRKTVEGFSRDT 347 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARESAKTPAP-- 492 +L Y WPGNIREL N++ER + TP+ P + + + Sbjct: 348 LNILTSYAWPGNIRELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLE 407 Query: 493 --RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 LE + DK A L ISR + + +L Sbjct: 408 QTERQIIINTLEANDADKEKTAKILKISRASLYNKLNK 445 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 143/455 (31%), Positives = 219/455 (48%), Gaps = 20/455 (4%) Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQR 133 K PV+L+ + + + S V +E + A L + Sbjct: 13 KKTNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRM 72 Query: 134 SYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMT 193 + Q+ + N V+ A +D+ EA G + + D + Sbjct: 73 PKVDGLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFD--IDDLAEKV 128 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 R +L ++ ++ M+G S M++V + I A + VLI GE+GTGKE Sbjct: 129 RKALDYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKE 188 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L ++AIH + PFV VNC AI E LLE+ELFGYE+GAFTG+ + G Sbjct: 189 LVSRAIHY--------NSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADER-KIG 239 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FE+A+ GT+ LDEIG+M LQ ++LRVL+E + R+GG + +PVDVRV++AT+ +L+ Sbjct: 240 KFELANHGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQS 299 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 ++ G FR DL++RL+++++QLPPLRER DI LA+ F+K A S + Sbjct: 300 LVKSGSFREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVT----GVTP 355 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAP 492 L+ YD+PGN+REL N++ R S + D+ P + P L Sbjct: 356 EVMAALMAYDYPGNVRELENIIARAVALCSGKVLTLDVLPPQVVEPKPALRPLKEVLLEA 415 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +QA+ D A A+ L + +RLK Sbjct: 416 ERRAFRQAVAVAGLDPQAVADLLQVDLDYAKKRLK 450 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 149/465 (32%), Positives = 213/465 (45%), Gaps = 31/465 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + L + + + L Q + + ++ Sbjct: 1 MAHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 D +N+ ++ A A +A G F Y + Sbjct: 61 IDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYS 120 Query: 199 HNTHD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 ++ R L ++G SP ME +R I A + ++LI GE+GTGKEL A Sbjct: 121 KLQNENWLLRRELEQNRD-RTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVA 179 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 QA+HR + + V++NC A AE+LLE+ELFG+E GAFTG+ + GL E Sbjct: 180 QALHR--------LSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALER-KKGLME 230 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 ++ GGTLFLDEIGE PL LQ +LLRVL+EK RVGG + D+R+I+ATH NLE+ + Sbjct: 231 VSDGGTLFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMIT 290 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DL+YRL+++ L LPPLR R DI L++ FL+ + P Q ++ Sbjct: 291 EGTFREDLYYRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPL----PQLSSQAQ 346 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPE------------LA 483 L HY+WPGN+REL+N++ER LF + PQ P Sbjct: 347 HDLYHYEWPGNVRELQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQ 406 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 Q AL G + AA LGISR+ +LK Sbjct: 407 PLPEHLETIEQKLIQAALIDARGVQAKAAELLGISRSNLQYKLKK 451 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 154/457 (33%), Positives = 230/457 (50%), Gaps = 26/457 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 I++ + +A K QE + AL++F+ L Q +T +A Sbjct: 5 IVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTGVEA 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I L N + A LA +A G + + + Sbjct: 65 LEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHCRMK 124 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + + + ++G+ + QV + A + A VLI GE+GTGKEL A AIH Sbjct: 125 GEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHD 184 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 R + S PFVA+NCGAI +L+E+ELFG+E+GAFT + + +AG FE A+GG Sbjct: 185 --------RSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDA-KETQAGTFERANGG 235 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIGE+PL Q +LLRVLEE+++TR+GG + +PV+VR+++AT+ NLEE+++ G+FR Sbjct: 236 TLFLDEIGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFR 295 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL YRL++ +QLPPLRER DI LA FL+ + L+ ++ + L Sbjct: 296 LDLLYRLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLN----LSIESITPEAMDQLCA 351 Query: 442 YDWPGNIRELRNMMERLALFLSVEPT-PDLTP------QFMQLLLPELARESAKTPA--- 491 YDWPGN+R+L N ++ + P P Q +L P+ A E Sbjct: 352 YDWPGNVRDLENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNS 411 Query: 492 -PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL+K N ++T A L ISR T + ++K Sbjct: 412 LAEKARILSALQKHNYNRTLTAEALNISRKTLFNKMK 448 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 141/467 (30%), Positives = 221/467 (47%), Gaps = 35/467 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI V LA+ + + V + ++ + + + + +T Sbjct: 1 MEKILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMS 196 D + E+ N V+ A + A EA G F Y + Sbjct: 61 IDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHL 120 Query: 197 LRHNTHDATRNAL---RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 + R + +R ++G+SP M+Q+ + + A+S+A+V I GE+GTGKE Sbjct: 121 SLVQENQYLRQQVSTGDSRNHFQ-IIGESPIMKQILRDVTRVAQSNASVFINGESGTGKE 179 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 + AQAIH A + PF+ VNC AI E+L+E+E FG+E+GAFTG+ R G Sbjct: 180 VIAQAIH--------ANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFK-RLG 230 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 FE+AH GTL LDEI E+PL +Q +LLR ++E+E RVGG +P+ VDVR+IS ++ ++++ Sbjct: 231 RFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKD 290 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 + R DL+YRL+++ + LPPLR+R DILPLA FL+ + + Sbjct: 291 AIAHKILREDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQ----AKTFSK 346 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALF-LSVEPTPDLT-------------PQFMQLLL 479 S L+ Y WPGN+REL N++ER + + E TP+ + Sbjct: 347 ESIKKLVGYAWPGNVRELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNT 406 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + L+ + ++T A LGIS T +L Sbjct: 407 LTSLPVGMTLQELEKRLIIETLQAQHNNRTKTAEVLGISVRTLRNKL 453 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 135/479 (28%), Positives = 222/479 (46%), Gaps = 28/479 (5%) Query: 62 CDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPAL 119 + ++ SN A S V+LI + ++L +L V + + + Sbjct: 2 PEIAVSRTSNSARELSAAG--VVLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQM 59 Query: 120 VAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSA 179 A L + +I + ++ A + A A G + Sbjct: 60 AAHPYDLVLLDFALPDRNGIEILKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQ 119 Query: 180 ATVR--QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 + +D + + AL+ RY +++G+S M ++ + A Sbjct: 120 KPWDNEKLLADVGAAIARRRVEEENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAP 179 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 S + VL++GE+GTGKEL A+AIH +K FV +N G++ LLE+ LFG Sbjct: 180 SRSTVLLQGESGTGKELIAKAIH--------MNSTRKDRAFVPINTGSMPTDLLESTLFG 231 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 + +GAFT + + GLFE+A GGTLFLDEIG M + Q ++LRVL++++ +GG Q + Sbjct: 232 HVKGAFTSAI-ASKKGLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKFMHLGGVQEI 290 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 VDVR+I+AT+ +L + +++G+FR DLFYRL+++ + LPPLR+R D+ L E F+K Sbjct: 291 QVDVRIIAATNVDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLLCEHFIKKFC 350 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQ 476 + P + LL Y+W GN+REL N++ER + + DL P + Sbjct: 351 EENAKPLMRM----TPEALRPLLDYNWQGNVRELENVIERAVVLANGPSITIDLLPDNVV 406 Query: 477 LLLPELARESAKTPAP--------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L+ + A LEK ++T AA I +T +++K Sbjct: 407 GRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEKVGWNQTEAAEKFRIPLSTLNQKIK 465 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 133/451 (29%), Positives = 216/451 (47%), Gaps = 21/451 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ ++ + L A + + + + + ++ E Sbjct: 5 ILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSGELV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH-- 199 ++ + + ++ + A EA G + + + L + R Sbjct: 65 LQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNRELI 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 H + R +++G+SP M +V + A S A+VLI GE+G GKEL A AI Sbjct: 125 VQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAI 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K+ P + V+C + AE +LE+ELFG+E GAFTG+ + G FE+AH Sbjct: 185 HN--------LSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMK-GRFELAH 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G++FLDEIGE+ + +Q +LLRVL+E+ RVGG + + VDVRVISAT+ NL E++++ Sbjct: 236 EGSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNL 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + +P LRER D+ L +FLK ++ +++ L Sbjct: 296 FREDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITS----IDPQAQSAL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELA---RESAKTPAPRLL 495 YDWPGNIR+LRN +E + S + + ++ L + Sbjct: 352 HAYDWPGNIRQLRNCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDAEKE 411 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 Q LE G+K+ A+ LGI R T + +L Sbjct: 412 IILQTLEAQKGNKSKTADVLGIGRKTLYLKL 442 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 133/463 (28%), Positives = 216/463 (46%), Gaps = 33/463 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ + L A V +E + + + + A Sbjct: 17 VLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVDGLQA 76 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I+++K N ++ A ++ A A G + Y + + ++ T Sbjct: 77 FYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQLT 136 Query: 202 HDATRNALRTRY------VLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + G ++G+S ++++V + I A S A VL+ GE+GTGK + Sbjct: 137 KEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESGTGKGMV 196 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH ++ PF+ VNCG+I E LLE+E+FG+E+GAFT + + G F Sbjct: 197 AKAIHYA--------SDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQ-KPGKF 247 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A GGTLFLDEI EM LQ +LLRVL+EKE RVGG + +VR+I+AT+ +L +++ Sbjct: 248 ELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEI 307 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 + FR+DL+YRL+++ + LPPL ER DI+ LA+ FLK + Sbjct: 308 SEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMF----FAPEV 363 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPEL-----------A 483 + +Y WPGNIREL N +E + + P+ P +++ E Sbjct: 364 LDIFRNYSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFK 423 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 +A+E+ G++T AA L ISR ++ Sbjct: 424 PLREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKI 466 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 142/458 (31%), Positives = 211/458 (46%), Gaps = 26/458 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + + + + T +E L ++ + ++ + Sbjct: 6 ILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGMSGLEL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 ++ V+ A A EA G + + + + Sbjct: 66 LKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLEHHRLI 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 R AL +Y ++G S Q+ + A + A +LI GETGTGKEL A+AI Sbjct: 126 EEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKELVAKAI 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H R ++ PF+ +NCGAI + LLE+ELFG+ +G+FTG+ + G E+A Sbjct: 186 H--------LRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGAL-THKKGKVEMAD 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+ LDEIGEMPL LQ R+LR+++E+E+ +VG P VDVR+++ATH L ++ G Sbjct: 237 GGTVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGT 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL ++ + LPPLRER DIL L + FL+ S P L Sbjct: 297 FREDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLP----YF 352 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQ--------LLLPELARESAKTP 490 +Y WPGN+R+L N +ERL L P F+ + L Sbjct: 353 TNYSWPGNVRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGINLE 412 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 QAL+K+ G++T AA YL +SR F RL+ Sbjct: 413 DLEKDLILQALKKYAGNQTRAAQYLNMSRRAFAYRLEK 450 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 139/456 (30%), Positives = 213/456 (46%), Gaps = 24/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + L + +E + L + + Sbjct: 4 LLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIEI 63 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ--AFSDALDMTRMSLRH 199 + E V+ A A A G F Y + + Sbjct: 64 LNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNLI 123 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R L ++ + ++G+S +M QV + ++A VLI GE+GTGKEL A+AI Sbjct: 124 KENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARAI 183 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K PF+A+NC AI ++L+E+ELFGYE GAFTG+ + GL E A Sbjct: 184 HY--------NSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTR-KIGLIESAD 234 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEI E+PL Q++LLRVL++KEV ++G VDVR+I+AT+ NL E +++ + Sbjct: 235 KGTLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNK 294 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL ++ +++PPLRER DI L F++ + + + L Sbjct: 295 FREDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVN----GIEEKALEAL 350 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLP------ELARESAKTPAP 492 L+Y WPGNIREL +++ER + + + ++++ P ++ E Sbjct: 351 LNYSWPGNIRELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINYEEL 410 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++AL K N AA LG+S TFW RLK Sbjct: 411 EKELIKKALIKSNFVIAKAARLLGMSYDTFWYRLKK 446 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 155/454 (34%), Positives = 221/454 (48%), Gaps = 35/454 (7%) Query: 95 QALAKAGKLTSSIGVVTYQETIPALVAFQK---TFNLRLDQRSYITEEDARGQINELKAN 151 +A+ + + V + + L A + + + ++ D I + + Sbjct: 20 KAVTQILQREGHPVVAI-DDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPD 78 Query: 152 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS---DALDMTRMSLRHNTHDATRNA 208 ++ A + A EA G + Y + A A Sbjct: 79 VEVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEA 138 Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 L R D++GQS QM V + + + S+A VLI+GE+GTGKEL A+AIH Sbjct: 139 LTVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHY------- 191 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 R +K PFVAVNC A+ E+LLE+ELFG+ +G+FTG+ G + GLFE A GGT+FLDEI Sbjct: 192 -RSARKDKPFVAVNCSALTETLLESELFGHVKGSFTGAT-GNKKGLFEAADGGTIFLDEI 249 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 G++P Q RLLRVL+E EV RVG ++PV VDVRVI+ATH +L +QG+FR DLFYRL Sbjct: 250 GDVPPATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRL 309 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 +++ + LPPLR+R D+ LA FLK+ + + + L W GN+ Sbjct: 310 NVITIDLPPLRDRPEDVPLLAHHFLKLYASKADKKVT----GISPRAMEALTCNRWTGNV 365 Query: 449 RELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTP-------------APR 493 REL N++ER + E DL P F P+ E A Sbjct: 366 RELENVIERAVVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFE 425 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 LEK N + ++AA G+ R+ F R LK Sbjct: 426 RRYLSALLEKNNQNVSSAARAAGVDRSNFRRLLK 459 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 140/455 (30%), Positives = 215/455 (47%), Gaps = 22/455 (4%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYIT 137 P IL ++K + QETI + + + Sbjct: 3 KKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMPVMN 62 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 + ++ ++ ++ + A +A G + Y + D L + Sbjct: 63 GIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRALEK 122 Query: 198 RHNTHDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 R + + + + M+G SP ++ V + I A S VLI+GE+GTGKELA Sbjct: 123 RKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKELA 182 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+ IH+ + PFV VNC + ESLLE+ELFG+ +GAFTG+ R GLF Sbjct: 183 AKMIHQY--------SKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAES-RVGLF 233 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 EIA GGTLFLDEIGE+ + Q +LLRV++ E+ RVG ++ + VD R+I+ATH NL ++ Sbjct: 234 EIAEGGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEV 293 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 ++GRFR DL++RL+++ L+LP LRER D+ L + FL+ + Sbjct: 294 KEGRFREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK------GERTMDMHPEA 347 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTP--AP 492 + YDWPGNIREL N +ER + + P ++ E ++ + Sbjct: 348 LHAMTLYDWPGNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEIALSEV 407 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q L++ N K AA LGIS T + ++K Sbjct: 408 EKNHIIQVLKEKNWHKPLAAKTLGISLKTLYNKMK 442 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 213/465 (45%), Gaps = 33/465 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ V+++ + E + + + + + Sbjct: 5 ILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDGLEV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH-- 199 + E ++ A +A G F Y + + + R Sbjct: 65 LQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERRQLM 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + + ++Y +++G SP M+ V I A +++ VLI GE+GTGKE+ A+AI Sbjct: 125 QENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIARAI 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K PFV V+C ++E+LLE+ELFG+ +G+FTG+ + G+F++A+ Sbjct: 185 HY--------NSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVAN-KRGMFDVAN 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDE G +PL Q +LLRV++E+E VG +VR+I+AT+ +L+ + +G Sbjct: 236 NGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGT 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YR+++ + P LRER DI LA FLK+ + L P S + + + ++L Sbjct: 296 FREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVS----EISEGAMSLL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP----------------DLTPQFMQLLLPELA 483 ++Y WPGN+REL N M+R + S D+ +L + Sbjct: 352 MNYGWPGNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKI 411 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L Q+ L++ + T +A G+ RT F +K Sbjct: 412 AREKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQALMKK 456 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 140/452 (30%), Positives = 214/452 (47%), Gaps = 23/452 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL D +ALA + + F+ L Sbjct: 6 ILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDGLWL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 + E + + D A E+ G + + + A Sbjct: 66 LRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKKETM 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 R L+ + D++ QS M +V + + A S A+V I GE+GTGKE+ ++A+ Sbjct: 126 REVQTLRRRLK-QLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAV 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H ++ PF+A+NC +I +L+E+ELFG+E GAFTG+ + R G+FE+AH Sbjct: 185 HN--------LSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQR-RPGVFEMAH 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDE+GE+P+ LQ +LLRVLEE ++ R+GG + VDVRV+ AT+ +L+++++ GR Sbjct: 236 GGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGR 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL++RL++ ++ LPPLRER D+ L + F+ S + VL Sbjct: 296 FREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVS----GVHPEAMEVL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPE----LARESAKTPAPRL 494 +YDWPGNIRELRN +ER + E T + P M PE A Sbjct: 352 KNYDWPGNIRELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVER 411 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 +L++ +K A LG+S T + +L Sbjct: 412 EYILGSLQRNGNNKARTAEVLGVSEKTLYNKL 443 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 138/464 (29%), Positives = 225/464 (48%), Gaps = 27/464 (5%) Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 +SV I++ + L + K GV Q+ + + + + Sbjct: 1 MSVEKIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGM 60 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTR 194 +A ++ + + ++ A + A EA G + Y Q + Sbjct: 61 DGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNE 120 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + R+A + ++ +M Q+ + + A+S A+VLI+GE+GTGKEL Sbjct: 121 RQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKEL 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH + PF+ VNC A+AESLLE+ELFG+E GA+TG+ R G Sbjct: 181 VARAIHYF--------SPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAK-RIGR 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A+ GTL LDE+ E+ +Q +LLRVLEE+E RVGG + + +DVR+++ T+ +L ++ Sbjct: 232 FELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKE 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +Q+G FR DLFYRL+++ + LPPLRER DI LA ++L+ + + ++++ + Sbjct: 292 IQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENN----SSVKSIEKR 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDL----------TPQFMQLLLPELAR 484 + L Y+WPGN+REL+N+M+R + S E + M + + Sbjct: 348 AMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKK 407 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 LEK G+KT AA L I+ T +L Sbjct: 408 NGQSIEDAEKELIFTTLEKTGGNKTKAAGLLKITTRTLRNKLNK 451 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 148/476 (31%), Positives = 224/476 (47%), Gaps = 32/476 (6%) Query: 72 GAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLR 129 GA ++ + ILI V + +A A + V E I A + Sbjct: 19 GASVRLSPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVT 78 Query: 130 LDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDA 189 + + + ++ EL + T VV A +A EA G + A Sbjct: 79 DLRMVPVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRA 138 Query: 190 LDMTRMSLRHNTH--------DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 + + R ++G S M +V + A + A Sbjct: 139 RVEKSIEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGAT 198 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VL+ GE+GTGKEL A+AIH ++ PFV+++C AI E LLE+ELFG+E+G Sbjct: 199 VLVLGESGTGKELVARAIHDA--------SPRREQPFVSISCAAIPEGLLESELFGHEKG 250 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ R + G FE+A+GGTLFLDE+GE+P +Q +LLRVL+E++ RVGG + V VDV Sbjct: 251 AFTGAIRR-KLGRFELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDV 309 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 RV+SAT+ NL + ++ GRFR DL+YRL+++ + LPPLR+R D+ LA F+ +S Sbjct: 310 RVVSATNRNLAQMVESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMS 369 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP 480 A+ + +L + WPGN+REL N++E+ +F E P P+ ++ P Sbjct: 370 R----AVTGLAPEALELLRRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPP 425 Query: 481 ELARESAK--------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + A EK G K A LGI + + +L+ Sbjct: 426 APSLPVPSGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEK 481 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 217/472 (45%), Gaps = 41/472 (8%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + ++ A K G ++ I + + + + Sbjct: 5 VLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSDGLQV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 E + V+ A D A +A G Y + T++ Sbjct: 65 VRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKVQALR 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + A R L ++ M+G++ +M QV + + L A + A VLI GE+GTGKE+ A AI Sbjct: 125 QENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIANAI 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR + + V+C A+ E+LLEAELFG+E GAFTG+ + R G FE+AH Sbjct: 185 HR--------NSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQ-RLGRFELAH 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEIGE+ +Q +LLRVL+EK RVGG + + DVR++ AT NL+E+++ GR Sbjct: 236 KGTLFLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGR 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++++ LPPLRER DIL LAE L+ S + + ++ A+ VL Sbjct: 296 FREDLFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQR----VMKGFSVAARDVL 351 Query: 440 LHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQ---------------------- 476 LHY +PGN+REL N +ER + Sbjct: 352 LHYSFPGNVRELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSN 411 Query: 477 -LLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + LE+ +TAA+ LG+SR W + K Sbjct: 412 VTNARQTGTLAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCK 463 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 143/466 (30%), Positives = 218/466 (46%), Gaps = 34/466 (7%) Query: 83 VILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 V+L+ ++ +L K + +G E + L + L + T D Sbjct: 17 VVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMD 76 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA--FSDALDMTRMSLR 198 + ++ A + A +A G + + +++A + Sbjct: 77 LLKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSL 136 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + R L + ++G S + + A S A VL+ GE+GTGKEL A++ Sbjct: 137 VVENRVLRAQLAEQRS-RAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARS 195 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +H + PF+A+NC AI ES+LE ELFGYE+GAFTG+ R G FE A Sbjct: 196 LHEG--------SARADKPFIAINCAAIPESILEGELFGYEKGAFTGAT-SSREGRFEAA 246 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGH-QPVPVDVRVISATHCNLEEDMQQ 377 GGTLFLDE+GEMP +Q +LLRVL+E E+ R+GG + P+D+R+I+AT+ L + +Q+ Sbjct: 247 SGGTLFLDEVGEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQE 306 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR DL+YRL+++ + +PPLRER DI L + FL+V + Q + Sbjct: 307 GRFREDLYYRLNVISIAVPPLRERRDDIPLLVQHFLQVYADKNGK----FMAGCTQDALD 362 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARE----------- 485 L Y WPGN+REL N +ER + E + P ++ LA Sbjct: 363 RLCRYAWPGNVRELENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALR 422 Query: 486 ---SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + + L GDK AA LGI+ T +RRL++ Sbjct: 423 FAVGTPLAEIEMAVIHETLRHTKGDKRLAAKLLGIATRTIYRRLEA 468 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 215/469 (45%), Gaps = 36/469 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV-TYQETIPALVAFQKTFNLRLDQRSYITEE 139 VP +LI + L +A + + + + E + A + + + Sbjct: 2 VPSVLIVDDEKHTREGLQQALVDSYDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGL 61 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSL 197 + ++ A + A EA G + V + + Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKT 121 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 L ++ ++G SP++ +V + L A S A +LIEGE+GTGKEL AQ Sbjct: 122 LEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQ 181 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH+ + PF+AV+C A++E+LLE+ELFG+E G+FTG+ R G FE Sbjct: 182 AIHQS--------SSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATER-RIGRFES 232 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDEIGE+ Q +LLR LE K + RVGG +P+ +DVR+++AT+ LE+ ++ Sbjct: 233 ADGGTLFLDEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRD 292 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G+FR DLF+RL+++R+ +PPLRER D+ L ++ P + Sbjct: 293 GKFREDLFFRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLT----IEPGALA 348 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKT------ 489 L Y WPGNIRELRN E + DL P++ L + Sbjct: 349 TLQAYPWPGNIRELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGST 408 Query: 490 ------------PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++AL K G++T AA +GISR T R++ Sbjct: 409 VLGGAVPTSFSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKI 457 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 141/454 (31%), Positives = 204/454 (44%), Gaps = 22/454 (4%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITEE 139 P+ILI + Q + V E ++ + I Sbjct: 4 PLILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGM 63 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSL 197 + + + V+ + A +A G + Y Q Sbjct: 64 ELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLR 123 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + + R + ++LG S QM ++ I A VLI+GETGTGKELAA+ Sbjct: 124 LQDENRQLRQQVAGCQA-DELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAAR 182 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 IHR ++ F+ +NCGA+ E+LLE+ELFG+ GAFTG+ + + GL E Sbjct: 183 MIHR--------LSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKD-KKGLLES 233 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GTLFLDEI Q +LLRVL+E RVG H+P VD+RVI+A++ LE+++Q Sbjct: 234 ADHGTLFLDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQT 293 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR DLFYRL+++ + LPPLRER DI LA FL S+ + Sbjct: 294 GRFRSDLFYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSS----ISPEALQ 349 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP---ELARESAKTPAPR 493 L +Y WPGN+REL N++ER + P P+F P +E Sbjct: 350 SLRNYHWPGNVRELENIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMAEVE 409 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L+ G + A+ LGIS + WR++K Sbjct: 410 RRHIIRVLKATAGHRGKASKLLGISLASLWRKVK 443 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 136/459 (29%), Positives = 214/459 (46%), Gaps = 31/459 (6%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITEE 139 P ILI +A Q+ + + + + + Sbjct: 4 PKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVNGL 63 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + Q+ ++ + A ++ G F Y + + + Sbjct: 64 EFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQA 123 Query: 200 NTHDATRNA--LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + R+ ++ R +L +++G+S +M + + I A S + VLI+GE+GTGKEL A+ Sbjct: 124 LQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVAR 183 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH + FVA+NC AI + LLE+ELFG+ +G+FTG+ R G FE+ Sbjct: 184 AIHD--------LSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAV-ASRIGRFEM 234 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GTLFLDEIG+M LQ +LLRVL+ +E+ VG + VDVR+I+AT+ NL+ + Sbjct: 235 ADKGTLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVAS 294 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YRLS++ + LPPLRER +D+ L SFL+ + ++ + Sbjct: 295 KEFREDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRK----VQGFDKQVME 350 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQL-------------LLPELA 483 +L +YDWPGN+REL N++ERL + + P+ + L + Sbjct: 351 ILSNYDWPGNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGF 410 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 ++ QALEK G+K AA L + RTT Sbjct: 411 CLNSAVEEFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 148/456 (32%), Positives = 215/456 (47%), Gaps = 25/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + Q L +E L + L Q + + + Sbjct: 8 ILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMPHFSGIEI 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 Q + +V + A EA G + Y + T + Sbjct: 68 LEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRATEHARLR 127 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + + +++G+SP ++++++ I A S VLI GETGTGKELAA+ I Sbjct: 128 QENRRLQQQVAGCRG-DELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKELAAKLI 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ G+ PF+A+NCGA+ E+LLE+ELFG+ +GAFTG+ + + GLFE Sbjct: 187 HKW--------SGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQD-KPGLFETVD 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEI M L Q +LLRVL+E +VGG QP DVRVI+A+ L E + G Sbjct: 238 QGTLFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGS 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FRRDLFYRL+++ L+LPPLR+R DI LA FL A ++ T L Sbjct: 298 FRRDLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQ----VQTIPAPVITRL 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT--PDLTP-----QFMQLLLPELARESAKTPAP 492 L + WPGN+REL N +ER LF + L P + +L +S + Sbjct: 354 LDHSWPGNVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASM 413 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +AL++ NG + A LGIS + WR++K Sbjct: 414 EKKLIIKALQRANGHRGKTAELLGISPASLWRKIKK 449 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 132/456 (28%), Positives = 211/456 (46%), Gaps = 24/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS---IGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 IL + +K + E + L + + + Sbjct: 7 ILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGIE 66 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 +I L ++ + T +A G + Y + T +S + Sbjct: 67 LLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAA 126 Query: 201 THDATRNA--LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 +Y +++GQ +M ++ + I A++SA VLI GE+GTGKEL A A Sbjct: 127 VQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASA 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH A+ +K PF+ +NC A+ E L+ +ELFG+E+GAFTG+ + GLFE A Sbjct: 187 IH--------AKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAV-ARKKGLFEQA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDEIG++ Q LLR+LE RVGG + + DVR+I AT+ +L ++ Sbjct: 238 SGGTLFLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREK 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 +FR DL+YRL+++ LQ PPLR+R +DI L FL+ + + + + + T+ Sbjct: 298 QFREDLYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQ----IDGVTRDAMTL 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELAR-----ESAKTPAP 492 L +YDWPGN REL N++E +F D P ++ + +A Sbjct: 354 LCNYDWPGNCRELANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADA 413 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ LE+ N + AA L I+R T + +++ Sbjct: 414 ESALIKKVLEESNWNLKKAAELLDIARGTLYGKMEK 449 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 224/502 (44%), Gaps = 72/502 (14%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ ++ AL +A V + + + + + + + Sbjct: 9 ILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMDGIAM 68 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 QI ++ ++ + A EA G Y + M + Sbjct: 69 LQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQQPRP 128 Query: 202 HDATRNAL-------RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 A RT ++G+ ++ + A S A VL+ GE+GTGKE+ Sbjct: 129 AAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESGTGKEV 188 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+ IH +K+ PFVA+NC A+ E LLE+ELFG+E+GAFTG+ + G Sbjct: 189 FARFIHHV--------SDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMA-KKGK 239 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+AHGGTL LDEIGE+PL LQ +LLRVL+E+EV R+GG +PV VDV V++ T+ +L E Sbjct: 240 FELAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEA 299 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ G FR+DL+YRL+++ ++LP LRER DI LA+ F++ + P ++ A Sbjct: 300 VKDGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPL----KKLSAA 355 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT-------PDLTPQF---MQLLLPELAR 484 + L YDWPGN+RE+ N++ER L + + +L P+ +L P Sbjct: 356 ARQRFLDYDWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPA 415 Query: 485 ESAKTP----------------------------------------APRLLTPQQALEKF 504 ++ QAL + Sbjct: 416 DAEPVDAAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQT 475 Query: 505 NGDKTAAANYLGISRTTFWRRL 526 + ++T AA LGIS T +L Sbjct: 476 DDNRTHAAKMLGISVRTLRNKL 497 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 140/467 (29%), Positives = 219/467 (46%), Gaps = 35/467 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKT---FNLRLDQRSYITEED 140 +LI + + L + + VV L K + + D Sbjct: 14 VLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSNSID 73 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL--R 198 + A+ V+ A A + G+F Y A + + + Sbjct: 74 FIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKVSSL 133 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + R AL +Y G+++G SP + + + + R+ + VL+ GE+GTGKEL ++A Sbjct: 134 TIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELVSRA 193 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH +K PFVA+NC AI E+LLE+ELFGYE+GAFTG+ + + G FE+A Sbjct: 194 IHY--------NSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKT-KKGRFELA 244 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGT FLDEI EM +Q ++LR++E KE+ R+GG + VDVR+I AT+ +L + +++G Sbjct: 245 AGGTFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEG 304 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 +FR DL+YR+S+ + LP LRER DI+PL++ F+ A + E + Sbjct: 305 KFRDDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIV----LSSEVEKI 360 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPE--------------- 481 L+ + W GNIREL+N++ER + L + P Sbjct: 361 LIKHKWEGNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFD 420 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + +ALE+ + T AA LG++R TF RL+ Sbjct: 421 IPPNGLSLDDLEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQK 467 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 135/458 (29%), Positives = 220/458 (48%), Gaps = 28/458 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQK-TFNLRLDQRSYITEED 140 I I +L+ + K + + + + + L L+ + + Sbjct: 11 IFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPDMDGLQ 70 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLR 198 ++ +L+ ++ A D A EA G + Y + ++ L Sbjct: 71 ILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVLERELL 130 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + L + ++ S + +V + L A S A +LI GE+GTGKEL A A Sbjct: 131 RKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTGKELIAGA 190 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IHR ++ +++NC A++++LLE++LFG+ GAFTG+ + GL E A Sbjct: 191 IHRH--------SKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQK-GLLEEA 241 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GTLF+DEIG+M L LQ +LLRV++E + VG + VD+R ++AT+ NLE+++ +G Sbjct: 242 DSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEG 301 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL+YRL+++ + LPPLRER DI PLA FL+ ++ + + + + + Sbjct: 302 RFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKE----VDRFTREALDL 357 Query: 439 LLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARESA---------K 488 +L Y WPGNIREL N++ER + S T D P + + + A A Sbjct: 358 MLGYSWPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVS 417 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 +Q L + K+ A LGISR T R++ Sbjct: 418 LENVEREHIRQTLARTGFHKSRTAEILGISRKTLDRKI 455 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 138/456 (30%), Positives = 213/456 (46%), Gaps = 25/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS-IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 ILI + +L A + + + + L + + + Sbjct: 4 ILIIDDEPSICSSLQFALEDDYETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDGLEVL 63 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRHN 200 +I K ++ A + +A G + Y + + FS + Sbjct: 64 QEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYKKLNE 123 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 L +Y M+G+S M QV I ++VLI GE+GTGKEL A+AIH Sbjct: 124 QVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARAIH 183 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 +K F VNC AI E LLE+ELFGYE+GAFTG+ + G F++A+ Sbjct: 184 FSG--------KRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATR-KEGKFQLANR 234 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIG+MPL LQ +LLRVL++KEVT++G ++ +DVRVI+AT+ +L+E +++G F Sbjct: 235 GTIFLDEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTF 294 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL++RL ++ + LPPLRER D+ L + FL L +++ ++ LL Sbjct: 295 REDLYFRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGK----SMKGFRSDAQRELL 350 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTP--------A 491 Y +PGNIREL N++E + E + P F++ A++ Sbjct: 351 AYQYPGNIRELSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIGRPLKE 410 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L+ + + A LGIS +LK Sbjct: 411 LEKDFILATLKHNDNHRKKTAEMLGISERGLRDKLK 446 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 220/474 (46%), Gaps = 42/474 (8%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + + Q+ + + + I A+ + + I+ +A Sbjct: 8 ILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMPGISGLEA 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 + E + ++ A TD+A EA G + Y + Sbjct: 68 YAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKAVAAGRSM 127 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + A ++G+S M+ + + I A + A VLI GE+GTGKEL A+A+ Sbjct: 128 RSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGKELVARAV 187 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 ++ + PF+ +NC AI E+LLE+ELFGYE+GAFTG+ G + G E A+ Sbjct: 188 YQH--------SLRADKPFLVINCVAIPETLLESELFGYEKGAFTGAT-GRKVGKIEQAN 238 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIG+MPL +Q ++LR+L+E+ V R+GG Q +PVDVR+I+AT+ +LE ++ G+ Sbjct: 239 RGTVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQ 298 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL ++ + +PPLRER DI L FL + P + +L Sbjct: 299 FREDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQP----DPGVSDEAMALL 354 Query: 440 LHYDWPGNIRELRNMMERLALFLSV-----EPTPDLTPQFMQLLLPELARESAKTPAPRL 494 WPGN+REL N +++ +F + + + ++ P A Sbjct: 355 TTQPWPGNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVR 414 Query: 495 LT--------------------PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ALE G+++ AA LG+SR T +++ Sbjct: 415 RELASGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEK 468 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 155/462 (33%), Positives = 221/462 (47%), Gaps = 26/462 (5%) Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 + ILI + QAL V + ++ + + + + + + Sbjct: 1 MGKYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGM 60 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 + I + ++ A D A A G Y + + Sbjct: 61 DGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLE 120 Query: 197 LRHNTHDATR--NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 R D R L +Y +++G S M V +TI S + VLI GETGTGKEL Sbjct: 121 KRGLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKEL 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH + P++ VNC A+ E L+ +ELFG+ +GAFTG+ + GL Sbjct: 181 VARAIH--------FNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVAD-KRGL 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE A GGTLFLDEIG++ LQ LR LE+ E+ VG Q V VR+I+AT+ NLE Sbjct: 232 FEAADGGTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAM 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++QG FR+DL+YRL+++ + LPPLR+R DI LA FL A + +R Sbjct: 292 VEQGGFRKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNK----NIRGIAPR 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFM-----QLLLPELARESAK 488 + +L +Y WPGN+REL N++ER LF L+ E TPD PQ + L + E+ Sbjct: 348 ALRLLENYSWPGNVRELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTS 407 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWR---RLK 527 A + LE N +KT A+ LGI R+T WR RLK Sbjct: 408 LEAVSRRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLK 449 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 155/479 (32%), Positives = 224/479 (46%), Gaps = 45/479 (9%) Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYI 136 + ++ + + L +A E + AL + L + + Sbjct: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 QI + ++ A D A A G F Y +A+ + + Sbjct: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFD--IDEAVALVERA 118 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + H ++ D++G++P M+ V + I +RSS +VLI GE+GTGKEL A Sbjct: 119 ISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVA 178 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 A+HR + PF+A+N AI + L+E+ELFG+E+GAFTG+ R G FE Sbjct: 179 HALHRH--------SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGAN-TIRQGRFE 229 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGTLFLDEIG+MPL +QTRLLRVL + + RVGG+ PV VDVR+I+ATH NLE+ +Q Sbjct: 230 QADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G+FR DLF+RL+++R+ LPPLRER DI LA FL+V+ L + +E Sbjct: 290 EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE----AKLLHPETE 345 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEP--TPDLTPQFMQLLLPELARE--------- 485 L WPGN+R+L N L + + + DL + + + E + Sbjct: 346 AALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATL 405 Query: 486 -----------------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 S P AL G K AA LG R T R+LK Sbjct: 406 LAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 230/471 (48%), Gaps = 23/471 (4%) Query: 67 AAGSNGAYLKSRLSVPV-ILIKPSGYDVLQALAKAGKLTS-SIGVVTYQET-IPALVAFQ 123 +AG A R+ +L+ + L + + V I + A Sbjct: 3 SAGDTLASAPERVREQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGP 62 Query: 124 KTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV- 182 + + + D IN + +V A D A +A G Y Sbjct: 63 VDMVITDLRMPDLDGFDLIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFE 122 Query: 183 -RQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 + D + + +RY +++ S +M ++ + A S+A+ Sbjct: 123 IDELVLVIDKALAERALRRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTAS 182 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VL+ GE+GTGKEL A+AIH + FVAVN A+ E+L+E+ELFG+ +G Sbjct: 183 VLLTGESGTGKELVARAIHY--------NSPRAEGAFVAVNLAAVPEALVESELFGHTKG 234 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFT +R+ +AGLF A GGT+FLDEI EM PLQ +LLR L+E+E+ VG +P VDV Sbjct: 235 AFTDARQS-KAGLFNEADGGTIFLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDV 293 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 RV++AT+ +L+E M +G FR DL+YRL++++++LPPLR R DILPLAE FL ++ A L+ Sbjct: 294 RVVAATNRDLQERMAEGDFREDLYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLT 353 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP 480 P + ++ +L Y WPGN+REL N++ER + P+ P ++ Sbjct: 354 PP---RSVRLAAETQRILHSYPWPGNVRELANVIERGLTLCRGDLIAPEDLPNHVRERKS 410 Query: 481 ELARESA-----KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 +A ++ L++ G+KT A LG+ R T +R+L Sbjct: 411 NDFLSAAVARRMNLAQLEREFIERILKEEGGNKTRTAQRLGLDRKTLYRKL 461 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 141/493 (28%), Positives = 213/493 (43%), Gaps = 63/493 (12%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQE--TIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ ++ AL +A + + + + + + + + Sbjct: 5 ILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIEM 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 QI ++ + A EA G Y D R Sbjct: 65 LQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQRQGE 124 Query: 202 HDATRNALRTRYVLGD-------MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + ++G+ ++ + A S A VL+ GE+GTGKE+ Sbjct: 125 AALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKEV 184 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+ IH +K+ PFVA+NC A+ E LLE+ELFG+E+GAFTG+ + G Sbjct: 185 FARFIHHV--------SDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMS-KKGK 235 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE AHGGTL LDEIGE+PL LQ +LLRVL+E+EV R+GG +PV VDV V++ T+ +L Sbjct: 236 FEQAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAA 295 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +++G FR DLFYRL+++ ++LP +RER DI LA+ F++ A P ++ A Sbjct: 296 VREGNFREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKP----AKKLSAA 351 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT-------PDLTPQFMQLLLPELARESA 487 S L Y WPGN+REL N++ER L + +L P + + Sbjct: 352 SRQRFLEYQWPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGS 411 Query: 488 KTPAP----------------------------------RLLTPQQALEKFNGDKTAAAN 513 P P +AL + + ++T AA Sbjct: 412 ANPEPVAAADLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAK 471 Query: 514 YLGISRTTFWRRL 526 LGIS T +L Sbjct: 472 MLGISVRTLRNKL 484 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 135/471 (28%), Positives = 211/471 (44%), Gaps = 48/471 (10%) Query: 84 ILIKPSGYDVLQA-LAKAGKLTSSIGVVT-YQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI ++ +A L ++ S+ + T QE + + + Sbjct: 8 ILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVDGMTM 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 I V A + A +A G + Y + L + + Sbjct: 68 MNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVLEIEETA 127 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 R + +S M Q+ A S A VLI GE+GTGKE+ A+ IH Sbjct: 128 PAVKRKKNTA-------IFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHE 180 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + S FVAVNC A+ E+L+E+ELFGYE+GAFTG+ + G FE+A GG Sbjct: 181 --------NSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAV-NRKPGKFELADGG 231 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+ LDE+GE+PL LQ +LLRVL+EKEV R+GG +P ++VR+++ T+ L++++ +G FR Sbjct: 232 TILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFR 291 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL+++ ++LPPLRER DI+ LA F + + + LL Sbjct: 292 EDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGK----GSCKMTDDAVKALLD 347 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTP--------------------------QFM 475 YDWPGN+REL + +ER + + + Sbjct: 348 YDWPGNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETT 407 Query: 476 QLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + + + L++ G++T AA+ LGI+ T +L Sbjct: 408 EDSVSAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKL 458 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 144/486 (29%), Positives = 215/486 (44%), Gaps = 50/486 (10%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYIT 137 + ILI ++ L + + + + A+ L + Sbjct: 3 KMDKILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKN 62 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 + +I L+ V+ A D A EA G + Y + + + + + Sbjct: 63 GLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEV 122 Query: 198 RHNTHDATR----NALRTRYVLGDM--LGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + + R G++ +G +M++V + I A VLI GE+GTG Sbjct: 123 NRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTG 182 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KEL A+A++ +K+ PF+ VNC AI E+L E+ELFGYE GAFTG+ R Sbjct: 183 KELVARALYHH--------SDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERT-H 233 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 G FE HGGTLF DEI EMPL Q +LLR L+ E+ RVG QP+ VDVRV+ AT+ NL Sbjct: 234 IGKFERCHGGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNL 293 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 E ++QGRFR DL++RL I+ + LPPLRER DI L + FL +P +R+ Sbjct: 294 ERAVEQGRFREDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSP----IRRI 349 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE------ 485 + L + WPGN+REL N + R + S + + +F + E Sbjct: 350 EDGALAKLKSHAWPGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEWDKNPW 409 Query: 486 -----------------------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 + + + LE+ ++ AA LG+SR T Sbjct: 410 ARVERKLEELIPDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTL 469 Query: 523 WRRLKS 528 R+K Sbjct: 470 RHRMKK 475 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 141/460 (30%), Positives = 207/460 (45%), Gaps = 27/460 (5%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSI---GVVTYQETIPALVAFQKTFNLRLDQRSYITEE 139 ILI + L + + + + + Sbjct: 9 HILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGL 68 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 Q+ + ++ A + A A G + Y + + Sbjct: 69 TILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQ 128 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 ++ M+G SP M+++ + I A + A VLI GETGTGKE+ A I Sbjct: 129 LASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLI 188 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +++ P V VNC A+ ESLLE+ELFG+E+GAFTG+ R G FE+AH Sbjct: 189 H--------VNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQ-RKGRFELAH 239 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G++FLDEIGEM L Q +LLR+L+E+E RVGG V VDVRVI+AT+ +LE D++ G Sbjct: 240 KGSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGT 299 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ L LP LR+R+ DI LAE FL A S+ + + + L Sbjct: 300 FREDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYA----PSSPPARISEEAMERL 355 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDL-----------TPQFMQLLLPELARESAK 488 +YDWPGN+R+L + +ER + + L E + Sbjct: 356 NNYDWPGNVRQLEHEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEEL 415 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L Q+AL + + D AA LG+S F +R K Sbjct: 416 LADVERLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKK 455 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 138/464 (29%), Positives = 218/464 (46%), Gaps = 29/464 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ D+ AL + I L + + Sbjct: 1 MARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMS 196 D ++ E + ++ A D A EA G Y ++ Sbjct: 61 YDVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHG 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + A + L + ++G S M +V TI A + A ++I GE+GTGK L A Sbjct: 121 SLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H+ ++ PF+A+NC AI E+LLE+ELFGY++GAFTG+ + GL Sbjct: 181 EAVHQ--------NSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGAN-SNKTGLIT 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGTLFLDEIG+MP+ +Q+++L+VLE EV +G + VD+R+ISAT+ +LE ++ Sbjct: 232 MADGGTLFLDEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIR 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + FR DL+YRL+++ +++P LRER DI LA F+K A ++ + + Sbjct: 292 EKTFREDLYYRLNVIEIRMPALRERREDIPLLAAKFIKEEEA----VPDKVVKGFDEGAM 347 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQL-----------LLPELAR 484 ++ Y WPGN+REL+N++ER +F E P P ++ + L Sbjct: 348 KAMMAYPWPGNVRELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQP 407 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 A AL +F+G K A LGI TT +R++ Sbjct: 408 LKAMVYDYEKDIIINALNRFDGSKEMVAKTLGIDLTTLYRKMSK 451 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 140/461 (30%), Positives = 227/461 (49%), Gaps = 32/461 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + ++L V + +E I L L I + Sbjct: 5 ILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGMEV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 I L ++ + A +A G F + + + +S Sbjct: 65 LKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDLSRLE 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + + Y ++ G+SP + ++ + I + A ++A +LI GE GTGKEL A+AI Sbjct: 125 EENVLLKQKINRDY---ELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAI 181 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR+ + P V VNC AI E L+E+ELFG+E+GAFTG+ + G F+IAH Sbjct: 182 HRQ--------SKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEK-KRGKFDIAH 232 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDE+ +M L Q ++LR+L+EK+ RVGG++ + +DVRV++AT+ +LE++M++GR Sbjct: 233 EGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGR 292 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DLFYRL+++ L++PPLR R DI LAE FL P + + +L Sbjct: 293 FRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPG----KTIQDDALALL 348 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARES----------A 487 + + WPGN+REL+N +ERLA+ + D+ P E RE Sbjct: 349 MEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFRE 408 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L +F+G+ + A +G+ R+ +++K+ Sbjct: 409 AKMDFEKQYISRKLREFDGNISKTAESIGLERSNLHKKIKA 449 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 147/465 (31%), Positives = 229/465 (49%), Gaps = 31/465 (6%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYIT 137 ++ +LI V + + + L + L + I Sbjct: 11 NLLNLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIG 70 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRM 195 +A QI + + VV A +A G F Y L +T Sbjct: 71 GLEALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGH 130 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + R ++ R+ G M+G++P+ME++ + I A S+ VLI GE+GTGKE+ Sbjct: 131 LKLTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVV 190 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+A+H K PF+ V+CG++ +L+E+ELFGY +GAFTG++ + GL Sbjct: 191 ARAVHYTGCY--------KDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHS-KQGLL 241 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 +A GGT+FLDEIGE+P+ LQ++LLR L+EKE+ VGG + VP++VR+++AT+ +LE+ + Sbjct: 242 AMADGGTVFLDEIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAV 301 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 QQG FRRDL++RL++L L++PPLR+R DI L FL+ + A R + Sbjct: 302 QQGTFRRDLYFRLNVLTLRIPPLRDRKQDIPLLVGHFLERTERATG-----FQRNISDEA 356 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQ------------LLLPEL 482 ++L YDWPGN+REL + ++R S P +Q Sbjct: 357 LKLMLTYDWPGNVRELEHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAP 416 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +A+E+ +GDK AA LGI +TT +R+LK Sbjct: 417 TNGIVPIAEMEKQAILEAIERLHGDKLEAARLLGIGKTTLYRKLK 461 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 153/455 (33%), Positives = 238/455 (52%), Gaps = 25/455 (5%) Query: 84 ILIKPSGYDVLQALAKAG-KLTSSIGVVTYQET-IPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ + + ++++ + S V T + + L L + + + + Sbjct: 10 VLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLHGLEV 69 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + +L+ V+ A EA G Y + A A+ + + R T Sbjct: 70 VERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAV-IENSAKRVGT 128 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 R L ++ ++G SP+M++V Q + YA SSA+VLI GE GTGK+LAA+A+H Sbjct: 129 LRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARALH- 187 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 +++ PF A+NC + ESLL++E+FG+E+GAFTG+ R R G FE AHGG Sbjct: 188 -------TNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQ-RVGRFEHAHGG 239 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+MPL LQ +LLR LE EV RVG ++P+ VDVR+I+AT+ +L+++++ GRFR Sbjct: 240 TLFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFR 299 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DL++RL + ++LPPLRE DI L FLK + P + + A Sbjct: 300 QDLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKP----VPKVAPAVWKSFEG 355 Query: 442 YDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFMQLLLPELARES--------AKTPAP 492 YDWPGN+RELRN++ + + L E TPD P+ + A Sbjct: 356 YDWPGNVRELRNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEV 415 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++AL+ G++ AA L IS T +R+++ Sbjct: 416 ERYYIEKALDLTGGNREEAARLLNISERTLYRKIQ 450 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 143/457 (31%), Positives = 224/457 (49%), Gaps = 25/457 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI L + + V E + L + L + + D Sbjct: 10 ILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQSGLDL 69 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 ++ ++ A D A EA G F Y + Sbjct: 70 LERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFERIGLV 129 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + + + + MLG P+M +V + + A +++ VLI GE+GTGKEL A+AI Sbjct: 130 RENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAI 189 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H ++ +PF+A+NC AI E+L+E+ELFG+E+G+FTG+ G+FE A+ Sbjct: 190 HEG--------SQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARE-LGVFEAAN 240 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+FLDEIGEM + +Q +LLR ++EKEV RVGG +P+DVR+ISAT+ LE+++++G Sbjct: 241 GGTVFLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGS 300 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++R+ LPPLRER +D+ LAE F+K A + + + +L Sbjct: 301 FREDLYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGID----VEGISRPALKLL 356 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP-------ELARESAKTPA 491 ++Y WPGN+R+L +++ER L P P + +L E Sbjct: 357 MNYSWPGNVRQLESVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGIDMET 416 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A+E+ + AA LG+S T RL+ Sbjct: 417 LEKNLIIKAMERADWVIGKAAPLLGMSYKTLQYRLEK 453 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 221/471 (46%), Gaps = 49/471 (10%) Query: 81 VPVILIKPSGYDVLQALAKAGKL--TSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI DV + + + + + +E + L + + + Sbjct: 20 LQSILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSG 79 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 + +I +L ++ A A EA G + Y ++ + Sbjct: 80 LETLKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEAS 139 Query: 199 HNTHDATRNALRTRYVLG----DMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 T + + A ++G+S M+QV + I A ++A VLI GE+G+GKEL Sbjct: 140 KLTKEVSSQAFPAN-AFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKEL 198 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AI++ + + PF+A+NC AI E+LLE+ELFG+E G+FTG+ R G Sbjct: 199 VARAIYQY--------SLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQ-RIGK 249 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE GGT+FLDEIGEMP+ Q ++LRVL+E E +R+G ++P+ DVR+I+AT+ +L Sbjct: 250 FEQGDGGTVFLDEIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAA 309 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + + FR DLFYRL+++++ LPPLRERV DI L + FL A A Sbjct: 310 VAKREFRADLFYRLNVVKISLPPLRERVEDIPDLIDHFL----AKHRRYLPNAPTCISSQ 365 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARES------- 486 + LL Y WPGNIREL N+++R + + + P+ +Q + + Sbjct: 366 AMRSLLAYHWPGNIRELENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGP 425 Query: 487 -------------AKTPAPRLLTPQ--------QALEKFNGDKTAAANYLG 516 + RL T + Q LE+ GD++ A LG Sbjct: 426 AGGLDFLVQEIVGSDLRDHRLETLKSLLHRIYTQVLEECEGDESKAKRILG 476 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 134/455 (29%), Positives = 208/455 (45%), Gaps = 29/455 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI +A Q+ + + + + + Sbjct: 6 ILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRVNGLEF 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 ++ ++ A ++ G F Y + + + Sbjct: 66 IKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQALQ 125 Query: 202 HDATRNA--LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + ++ ++ R +L +++G+S +M + + I A S + VLI+GE+GTGKEL A+AI Sbjct: 126 RQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKELVARAI 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + + FV VNC AI + LLE+ELFG+ +G+FTG+ R G FE+A Sbjct: 186 HD--------LSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAV-ATRIGRFEMAD 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEIG+M LQ +LLRVL+ KE+ VG + VDVR+I+AT+ NLE + Sbjct: 237 RGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKI 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRLS++ + LPPLRER DI L +FL+ + ++ + + +L Sbjct: 297 FREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKF----NRNKQRKVQSFDKNTMDIL 352 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKT--------- 489 ++DWPGN+REL N++ERL + P+ + + E Sbjct: 353 CNFDWPGNVRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNS 412 Query: 490 --PAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 QALEK G+K AA L + RTT Sbjct: 413 AVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 142/464 (30%), Positives = 223/464 (48%), Gaps = 33/464 (7%) Query: 85 LIKPSGYDVLQALAKAGKLTSSI------GVVTYQETIPALVAFQKTFNLRLDQRSYITE 138 LI ++ +++ K T T +E + + Q L + + Sbjct: 8 LIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKMPEMNG 67 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR-QAFSDALDMTRMSL 197 +A I E ++ A A A G + Y V+ Q ++ + + + Sbjct: 68 LEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRKSLEAR 127 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + A N + + +++G S +M++V I + VL+ GE GTGKEL A+ Sbjct: 128 DLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVAR 187 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH +KS FVA+NCGAI E+L+E+ELFG+E+GAFTG+ + G F++ Sbjct: 188 AIH--------FNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVER-KIGKFQL 238 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+ GTLFLDEIGE+ +Q +LLRVL+E++ T VG ++ V R+I+AT+ NLE+ M++ Sbjct: 239 ANNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEE 298 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G FR DLFYRL+++ + LPPLRER DI LA +F+K +A + Sbjct: 299 GEFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITA----ITPEALD 354 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKT------- 489 +L Y WPGNIREL N++ER + + D P ++L + A ++A Sbjct: 355 MLKSYRWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLD 414 Query: 490 -----PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL+ NG I + T R+++ Sbjct: 415 FDAFKEEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRK 458 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 140/465 (30%), Positives = 217/465 (46%), Gaps = 32/465 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ D+ + L A + + E + L + + L + + Sbjct: 1 MDCILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRMS 196 D + V+ A A EA G F + + L Sbjct: 61 MDVLSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQ 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + R + ++G+ P M+ + + A S + VL+ GE+GTGKEL A Sbjct: 121 RLMRDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH+ + + PFVA+NC A+ E L+E ELFG+E+GAFTG+ ++G FE Sbjct: 181 RAIHQ--------LSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTR-KSGKFE 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A+ GT+FLDEIGE+PL LQ++LLRVLEE V R+G P+ +DVRV++AT+ LE+ ++ Sbjct: 232 MANRGTIFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVE 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G FRRDL+YRL++ +++PPLRER D++ +AE FL L P + + Sbjct: 292 AGAFRRDLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLS----LAPDAL 347 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE--------------- 481 L + WPGN+REL+N +ER A+ E T L Sbjct: 348 AALRAHLWPGNVRELQNTIERAAILHDTEVTAADLGLSANLRSAAAVSLGEHSIDMGGSL 407 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + + L + +K+AAA LGIS T ++ Sbjct: 408 PEVSAQASRTIEKAKIEATLRECKWNKSAAAERLGISYKTLLTKI 452 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 148/463 (31%), Positives = 215/463 (46%), Gaps = 32/463 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI L LA+ E + + +Q + + + Sbjct: 27 VLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRMDGMQL 86 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 ++N++ + V+ A + A EA G F Y V + Sbjct: 87 LERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNVSRQLEMQ 146 Query: 202 HD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + ATR LR+ LG M+G S M+ V I A ++ +VLI GE+GTGKEL A+ + Sbjct: 147 REMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKELVAKTL 206 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K+ PFVAVNC AI E+L+E+E+FG+E+GAFTG+ RAG FE+A Sbjct: 207 HE--------LSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIER-RAGCFELAE 257 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTL LDEIGEMP+ Q +LLRVLE++ R+G P+DVRV++AT+ N ++ + G Sbjct: 258 EGTLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGE 317 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 R DL+YRL++ + +PPLRE DI +A+ + + A+ + L Sbjct: 318 LRGDLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDR----AIEGMDDEMQARL 373 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARE------------- 485 L YDWPGN+RELRN MER + + + P P Sbjct: 374 LSYDWPGNVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVE 433 Query: 486 -SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + LE + +KT AA LGIS T +LK Sbjct: 434 VGTTVDEAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLK 476 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 226/468 (48%), Gaps = 35/468 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVT---YQETIPALVAFQKTFNLRLDQRSYIT 137 V +L+ D +L + +++ + V T + L A + + + + Sbjct: 7 VQRVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVG 66 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 I K T V A EA G++ + + + Sbjct: 67 GMKLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRD 126 Query: 198 R--HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 R + A R L R+ ++L +SP+M + + I A +++ VLI GETGTGKE Sbjct: 127 RALQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQI 186 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH+ ++ FVAVNCGA+ E+LLE+ELFG+E+G++TG+ R R G F Sbjct: 187 ARAIHQASANY-------RTGEFVAVNCGALNENLLESELFGHEKGSYTGADRK-RIGRF 238 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+AH GTLFLDEIG++P+ +Q +LLRVL+E+ RVGG +P+ +DVRV++ATH ++E+ + Sbjct: 239 ELAHKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLV 298 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 + G+FR DL+YRL+++R+ +PPLRER DI L F + + Sbjct: 299 KDGKFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKF-----VRVGQKPPTISPEA 353 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARE-------- 485 +L WPGN+R+L N +ER + DL P+ + A + Sbjct: 354 LDLLTKCPWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLN 413 Query: 486 -------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 S T A ++AL++ G A G+SR + ++ Sbjct: 414 RKLPDQLSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKI 461 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 142/463 (30%), Positives = 224/463 (48%), Gaps = 31/463 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ D L +A + + V A+ + +L + + Sbjct: 7 ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGNGIEL 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 + + ++ D A +A G + + ++ + Sbjct: 67 MREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIKTRQIK 126 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R +R++ ++GQ P ++++ +T+ L A S + VLI GE+G GKE+ A+A+ Sbjct: 127 ADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKAL 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ + P V++NCGAI E LLE+ELFG+ +GAFTG+ R R G FEIA+ Sbjct: 187 HKSG--------SRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRA-RPGRFEIAN 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+FLDEIG+M LQ +LLRVL+E+ VG Q + VDVRVI+ATH +LE ++ GR Sbjct: 238 GGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGR 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ L LPPLRER DIL L + F+ A + + ++ Sbjct: 298 FREDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQ----QKKADITGVSDEVKRII 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQ-------------FMQLLLPELARE 485 L+Y WPGN+REL+N++ER+ + P M + E Sbjct: 354 LNYQWPGNVRELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDL 413 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + AL++F +K AAN+L ++RTT ++K Sbjct: 414 KSTVDEFESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKK 456 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 215/469 (45%), Gaps = 34/469 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ + + L + + + L + + Sbjct: 1 MGRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 + Q +L+ +V A D A A G F Y + + T +S R Sbjct: 61 LELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSR 120 Query: 199 HNTHD---ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + T + + ++G SP+M ++ + I A + A VLI GE+GTGKEL Sbjct: 121 RQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELV 180 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH+ H FV + C AI ESL E+ELFG+ +GAFTG+ R GLF Sbjct: 181 ARAIHQ--------LSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTN-RTGLF 231 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E A+ GT FLDEIGE+ QT+LLRVL+E+E+ RVG + ++ R+ISAT+ +LEE++ Sbjct: 232 EQANYGTAFLDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEV 291 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 GRFR DLFYRL+++ +++PPLRER +D+ L E FL +R+ + Sbjct: 292 AAGRFREDLFYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKD----IRKISSYA 347 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPT---PDLTPQFMQLLLPELARESAKTPAP 492 +L++YD+PGN+REL N++ER + + P A + A Sbjct: 348 LELLMNYDFPGNVRELENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEAD 407 Query: 493 -------------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +AL+K KT AA L S + ++K Sbjct: 408 VFNRGLEPALTDFERQMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKK 456 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 145/456 (31%), Positives = 219/456 (48%), Gaps = 25/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI V + L K + E L + ++ D Sbjct: 5 VLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGLDL 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 +I + + + V+ A D A A G + + R Sbjct: 65 CERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRALR 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 R A+ +L SP M V + A S ++LI GE+GTGKEL A+A+ Sbjct: 125 EEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVARAV 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ R + FVAVNC A+ ++LLE+ELFG+ GAFT + +G R+GLF AH Sbjct: 185 HQ--------RSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDA-KGARSGLFARAH 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+P+ LQ +LLR L+E+ V VG + +PVDVR+I+AT+ +LE +++ R Sbjct: 236 GGTLFLDEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERR 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YR++++ + LPPLR R AD+L LA+ FL+ + P ++ + L Sbjct: 296 FREDLYYRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARP----IQGLSAPAAEKL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQ-------LLLPELARESAKTPA 491 + Y WPGN+REL+N +ER + D P+ ++ L+ + E Sbjct: 352 MAYAWPGNVRELQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEE 411 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE G+K+ AA LG R T +R+L+ Sbjct: 412 VERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLE 447 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 220/472 (46%), Gaps = 40/472 (8%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ +L+AL +G+ + L L + ++ + Sbjct: 12 VLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGLEL 71 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL---DMTRMSLR 198 + + ++ + A A +G + Y A + Sbjct: 72 LSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAERKML 131 Query: 199 HNTHDATRNALRTRYV--LGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + + LR + ++G S + +V + I A S+ VL+ GE+GTGKEL A Sbjct: 132 FDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKELVA 191 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +A+H AR +++ PFVA+NCGA+ E+LLE+ELFG+ +GAFTG++R + GLF+ Sbjct: 192 RALH--------ARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQK-GLFD 242 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGT+FLDEIG++P Q RLLRVL+E E+ RVG + V VDVRVI+ATH +L ++ Sbjct: 243 AADGGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVK 302 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 G+FR DLFYRL+++ + LP LR+RV D+ LA FL+ L +R + Sbjct: 303 AGKFREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKR----VRALAPDAI 358 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAP-- 492 +L Y WPGN+REL N +ER + E DL P P + A Sbjct: 359 ELLCGYRWPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVW 418 Query: 493 ----------------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + + + + +AAA G+ R+ F R L+ Sbjct: 419 LTMSYATAKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRK 470 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 140/451 (31%), Positives = 212/451 (47%), Gaps = 20/451 (4%) Query: 84 ILIKPSGYDVLQALAKAG--KLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 + I V + L+ A + ++ + + A++ + + + Sbjct: 6 VAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLEL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL--RH 199 +I L+ +V A EA G F Y V A+ Sbjct: 66 LPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIGMR 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R AL L ++G SP ++ + + A VLI+GE+GTGK L A A+ Sbjct: 126 MENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALAL 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K+ PFV NCG E L+ +ELFGYE+GAFTG+ + GL E A Sbjct: 186 HH--------LSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGAS-ASKVGLLEAAS 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGT+FLDE+GEMPL +Q RLL VL+E+ + RVGG +PV +D+RVI+AT+ +L+ ++++G Sbjct: 237 GGTVFLDEVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGT 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLF+RL+++ LP L +R DI L F+ F +++ + + L Sbjct: 297 FREDLFFRLNVVSTTLPRLADRREDIPLLVRHFID----KYGLAFRKSVQGIDEQALAAL 352 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARES-AKTPAPRLLT 496 Y +PGN+REL N++ER + DL L L + Sbjct: 353 QGYSFPGNVRELENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRY 412 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LEK +K AA LG+ RTT WR+LK Sbjct: 413 VIRILEKTGYNKRLAAQVLGVPRTTLWRKLK 443 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 217/456 (47%), Gaps = 23/456 (5%) Query: 82 PVILIKPSGYDVLQALAKAGK--LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEE 139 PV++I + + + + I + + QE++ + + + + I Sbjct: 5 PVVVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPRIDGM 64 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + ++ + A ++ G F Y +S + Sbjct: 65 KVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERALSHWN 124 Query: 200 NTHDATRNALRTRYVLGD--MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + + R + ++G+S M++V + I A +VLI GE+GTGKEL A+ Sbjct: 125 LSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVAR 184 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 IH + ++ + FVA+NC AI E ++E+ELFGY++GAFTG+ R + GLFE Sbjct: 185 QIH--------LKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERA-KPGLFET 235 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+GGT+FLDE+ L LQ +LLRVL++ R+G +P V+VRV++AT+ ++ + Q Sbjct: 236 ANGGTIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQ 295 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YRL ++ + +P LR+R D+ LA F+ + P + Sbjct: 296 ETFREDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKP----VDGMSTQVLG 351 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPD--LTPQFMQLLLPELAR----ESAKTPA 491 L+ +DWPGN+REL N+++R + + + L P+ + + + Sbjct: 352 ALMRHDWPGNVRELENVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEE 411 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++ L + NGD+ A LGI ++T WR++K Sbjct: 412 VEVYFIRKTLRETNGDRALCAEILGIDKSTLWRKIK 447 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 148/466 (31%), Positives = 224/466 (48%), Gaps = 35/466 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVT-YQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 ILI Q LA+A K + +E I L + + + Sbjct: 6 ILIVDDEIHTCQGLARALKYEWETFTASNGKEAIKIFEDNPVDIILTDVKMPGMNGIELL 65 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL----- 197 Q+ ++ V+ A T+ +A G + + R D + T + Sbjct: 66 RQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQASPSFQ 125 Query: 198 -------RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 A + ++ QS ME V +T+ A + ++VLI GETGT Sbjct: 126 LPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLITGETGT 185 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKE+ A+AIH A + F+AV+C A+ +L E+ELFG+E+G+FTG+ Sbjct: 186 GKEVIAKAIH--------AASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEK- 236 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 R G FE A GGTLFLDEIGE+ Q +LLR+LE + RVGG++ + D R+I+AT+ + Sbjct: 237 RIGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRD 296 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 L + +Q G FR DL+YRL ++ L+LPPLR+R DI L + +L S+ ++ Sbjct: 297 LRKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTEN----QLNVKG 352 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVE--PTPDLTP-------QFMQLLLPE 481 + L YDWPGN+RELRN++ER+A+ E P+L Q + E Sbjct: 353 FTADAMARLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIE 412 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ + +AL++ N ++T AA LG+SR T RRLK Sbjct: 413 DKDKALDVAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLK 458 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 143/461 (31%), Positives = 214/461 (46%), Gaps = 33/461 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI L L + + + +E + L + + + Sbjct: 14 ILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGMGGIEF 73 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 E A + A A G F Y + D + Sbjct: 74 MDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALEFARLS 133 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS-SAAVLIEGETGTGKELAAQA 258 + + R + +++ QSP M V + A S V + GE+GTGKE+ A+A Sbjct: 134 HENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLARA 193 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH FVAVNC AI E+LLE+ELFG+ GAFTG+ R R G F +A Sbjct: 194 IHFASGCLPSN--------FVAVNCAAIPEALLESELFGHVRGAFTGAERD-REGKFSLA 244 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGT+ LDEIG+MPLPLQ +LLRVLEE+ +VG ++P PVD RVI AT+ +L + +++G Sbjct: 245 RGGTVLLDEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKG 304 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL++R++++ + +PPLRER+ DI L + FLK+ AL + + + Sbjct: 305 RFREDLYHRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGK----ALPGVSKKAMDL 360 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLP--------------ELA 483 L+ + WPGN+RELRN++E A+ +S E P+ L Sbjct: 361 LIAHSWPGNVRELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLP 420 Query: 484 RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWR 524 E A + AL++ +G+K+ AA L ++R F+R Sbjct: 421 AEDVSLDAVVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 130/449 (28%), Positives = 218/449 (48%), Gaps = 26/449 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 ++I GY + A L + + + + + + ++ I E Sbjct: 136 VVIDKYGYITMINKTYADFLGVDQERSIGKHVTEVIESTR----MHIVAKTGIAETAQLQ 191 Query: 144 QINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHD 203 ++ G + + + E + G ++ + + Sbjct: 192 KVK-----GKYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYKKIRNIENEYKKYKGQ 246 Query: 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREY 263 + Y +++G+S ++ + + A++++ VLI GE+GTGKEL A AIH E Sbjct: 247 F-DESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESGTGKELFAHAIHME- 304 Query: 264 FARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTL 323 + F+ +NC AI LLE+ELFGYE GAFTG+++ G+ G FE+A GGT+ Sbjct: 305 -------SERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFELADGGTI 357 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDEIG+MPL +Q +LLRVL+E+EV R+G + +DVRVISAT+ +LE+ +++G FR D Sbjct: 358 FLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKEGEFRED 417 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 L+YRL+++ + +PPLRER DI L+E L+ L + + + + L++Y Sbjct: 418 LYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKK----TKSFSKEAMSCLMNYK 473 Query: 444 WPGNIRELRNMMERLALFLSVEPT--PDLTPQFM--QLLLPELARESAKTPAPRLLTPQQ 499 W G +R+L N++ER + P P + + E + + + Sbjct: 474 WEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDSDLNKLINQVEKDIILE 533 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L N +KT AA L ISRT+ + ++ Sbjct: 534 TLIYCNWNKTLAAKKLNISRTSLYEKIAK 562 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 221/470 (47%), Gaps = 31/470 (6%) Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGK--LTSSIGVVTYQETIPALVAFQKTFNLRLDQR 133 K + ILI + K + S + + + Q Sbjct: 4 KETMHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINM 63 Query: 134 SYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--D 191 + +I E+K +V A +A EA G + Y A + + Sbjct: 64 PQLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRN 123 Query: 192 MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + R + G++LGQS M++V I + VL++GE+G+G Sbjct: 124 ALEKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSG 183 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KELAA IHR R +K+ PF+ +NC A+ E+L+E+ELFG+E G+FTG+ R Sbjct: 184 KELAAHEIHR--------RSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATER-R 234 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 G FE+A+ GT+ LDEIG+M L Q++LLRVL+E++ R+GG + + VDVR+ISATH +L Sbjct: 235 MGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDL 294 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 EE++++GRFR DL+YR++++ +++PPLR+R DI L F++ + Sbjct: 295 EEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYK----NVVSI 350 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEP--TPDLTPQFMQLLLPELARESAK- 488 + L Y+WPGNIR+L+N +E + + + DL+ ++ + ++ Sbjct: 351 SNDAMKKLSAYNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHY 410 Query: 489 -----------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE+ G+ + A L + R +++K Sbjct: 411 HLSFREAKKILIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIK 460 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 144/455 (31%), Positives = 224/455 (49%), Gaps = 27/455 (5%) Query: 85 LIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 LI + + G I + + + AL L + ++ D Sbjct: 10 LIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRMGELSGIDFL 69 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRMSLRHN 200 + +L A++ + A ++ G + Y R + M Sbjct: 70 ASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQRMAEKVRLVA 129 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + R + T L ++G S +++ V + + + VLI GE+GTGKEL A+A+H Sbjct: 130 ENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTGKELVARAMH 189 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 PFVAV+CG++ +L+E+ELFG+E+GAFTG+ + + GLF+ A+G Sbjct: 190 FRGGF--------AKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIK-PKEGLFQAANG 240 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIGE+PL LQ +LLRVL++K+V VG +Q V VDVRVI+AT+ +LE + G F Sbjct: 241 GTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTF 300 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R+DL++RL+++ + LP LRER +DI L + F+ A + + L+ Sbjct: 301 RKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA------GREGVEVTSQAMKSLM 354 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELAR-------ESAKTPAP 492 YDWPGN+REL N +ER + E D P +Q + P+ +S Sbjct: 355 QYDWPGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDI 414 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 T Q+ ++ GDK A LGISR T +R++K Sbjct: 415 ERTTIQRVFDQVGGDKGLALKMLGISRATLYRKIK 449 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 217/473 (45%), Gaps = 39/473 (8%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQRSYITE 138 +P +LI +L +L A + + ++ + + + + + ++ Sbjct: 1 MPKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 DA I E V+ A T+ A EA G F Y + D + +R Sbjct: 61 LDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMR 120 Query: 199 HNTHDATRNA----LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 T + ++GQ P M V + I A VLI GE+GTGKEL Sbjct: 121 LAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKEL 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+ + PFVA+NC AI ++LLE+ELFG+E+GAFTG+ R R G Sbjct: 181 VARAL--------YLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRR-RVGK 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE A GGT+FLDEIG+MP Q ++LR+L+++ RVGG++ V DVRVI+AT+ +L Sbjct: 232 FEQAQGGTVFLDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSAL 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ +FR DL YRL+ + LPPLR+R DI PL F+ + L +R A Sbjct: 292 VRDSKFREDLLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKK----NVRGVDAA 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAKTP--- 490 + VL + WPGN+REL+N M + E PD P ++ T Sbjct: 348 ALAVLESHRWPGNVRELQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALIT 407 Query: 491 ----------------APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 LE +G++ AA+ LGISRTT +L+ Sbjct: 408 SLLRVGATDIYRQVTHTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQ 460 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 134/465 (28%), Positives = 217/465 (46%), Gaps = 33/465 (7%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVTYQ---ETIPALVAFQKTFNLRLDQRSYITEE 139 I+I D+L+ A+ TY+ E + + Q + + Sbjct: 6 HIVIIDDEPDMLETCARVIHRMGY-KCTTYEDSCEALEEIYRLQPDLIITDIKMPQCDGF 64 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSL 197 + + V+ D A +A G + Y + Q + Sbjct: 65 EVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKALQHIA 124 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + R L+ +++G ++ V +TI + S A++LI GE+GTGKE+ A+ Sbjct: 125 LTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKEVIAR 184 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH+ + + PF+ V+C ++ E+LLE+ELFGYE GAFTG+ + GL E+ Sbjct: 185 AIHK--------NSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTT-KQGLLEM 235 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 AHGGTLFLDE+GE+ +Q +LLR LEE+ + RVGG++ + +D+RV++AT+ +LE+ ++ Sbjct: 236 AHGGTLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRA 295 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YR++++ L+LP L ER DI L F K ++ S + Sbjct: 296 KEFREDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVS----GFTPEAMQ 351 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVE--PTPDLTPQFMQLLLPELARESAK------- 488 + Y WPGNIRELRN++ER E DL + + L + Sbjct: 352 AMKSYAWPGNIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHE 411 Query: 489 -----TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + ++ L+K +G+ T AA G+ R T R + Sbjct: 412 AKDICLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINK 456 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 129/471 (27%), Positives = 212/471 (45%), Gaps = 36/471 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLT--SSIGVVTYQETIPALVAFQKTFNLRLDQRSYITE 138 V +L+ + + + + + + + + + I+ Sbjct: 4 VKKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISG 63 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMS 196 + I E++ + + D A E G Y A + S Sbjct: 64 MEVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQR 123 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + LR +G+S +M +V + I+ A + + VLI GE+GTGKEL A Sbjct: 124 VVDLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVA 183 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH+ ++ HPFVAV+C ++ E+LLE+ELFG+ +G+FTG+ + GLF+ Sbjct: 184 RAIHKH--------SQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHT-KTGLFK 234 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GGTLFLDE+ + L Q +LLRVL+E+EVT +GG QP P+++R+++AT+ +L E + Sbjct: 235 VAEGGTLFLDEVSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVA 294 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DLF+RL+I+ + LPPLRER DI L ++ + ++ + Sbjct: 295 EGTFREDLFFRLNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKD----IKGVTAGAM 350 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE----------- 485 VL Y +PGN+REL N++ER + + P + + Sbjct: 351 QVLQSYSFPGNVRELENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEEL 410 Query: 486 --------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL++ G+ T AA G+ R F +K Sbjct: 411 KETKRHLREQAVEDIEKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKK 461 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 138/479 (28%), Positives = 227/479 (47%), Gaps = 44/479 (9%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + Q+ AK K + + + + A+ + Q ++ Sbjct: 1 MSSILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA-FSDALDMTRMSL 197 +A +I E+ A V+ A T+ A EA G F Y A D + + Sbjct: 61 LEAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAG 120 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 N G ++G SP M++V + I A++ A VLI GE+GTGKEL A+ Sbjct: 121 HMMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVAR 180 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AI++ + PF+ +NC A+ E+LLE+ELFGYE+GAFTG+ R G E Sbjct: 181 AIYQH--------SKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAA-SRRIGKIEQ 231 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+GGT+FLDEIG+MPL +Q ++LR+L+E+ + +GG+ + VDVR+++AT+ NLE+ ++ Sbjct: 232 ANGGTVFLDEIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIEN 291 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YRL ++ + LPPLR+RV D+ LA+ F+ + + + Sbjct: 292 EVFREDLYYRLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDN----PGLTDEARK 347 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRL--- 494 ++ H+ WPGN+REL N +++ +F P + + Sbjct: 348 MIRHHPWPGNVRELANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVG 407 Query: 495 -------------------------LTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + ++AL+ G+++ AA LG++R T ++ Sbjct: 408 EWAREMLTAGGDTARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDK 466 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 151/479 (31%), Positives = 226/479 (47%), Gaps = 49/479 (10%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQ---KTFNLRLDQRSYITEED 140 + I + L +A + + ++++ L+A + + Sbjct: 6 VWIVDDDSAIRWVLERALN-NAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDNDGLT 64 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 ++ + ++ A + A A G F Y + L ++ N Sbjct: 65 LLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALNYYRN 124 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 TR+ + ++G++P M++V + I +RSS +VLI GE+GTGKEL A A+H Sbjct: 125 QQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIADALH 184 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 R K + PF+A+N AI + L+E+ELFG+E+GAFTG+ + R G FE AHG Sbjct: 185 RH--------SPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQ-VRQGRFEQAHG 235 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 G+LFLDEIG+MPL +QTRLLRVL E + RVGG+ P+ VDVR+I+ATH LE+ +Q+G+F Sbjct: 236 GSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKF 295 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DLF+RL+++R+ LPPLRER DI LA FL + L + +ET+L+ Sbjct: 296 REDLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVE----SKILAPQTETILM 351 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQL---------------------- 477 W GN+R+L N+ L + S + P P +Q Sbjct: 352 SLPWSGNVRQLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDP 411 Query: 478 ---------LLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + P + AL G K AA LG R T R+LK Sbjct: 412 LANWTKTALENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLK 470 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 144/471 (30%), Positives = 221/471 (46%), Gaps = 45/471 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ V + L + QE + L + + + + Sbjct: 9 VLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDGLQV 68 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 ++ + ++ A LA EA G + + + L R +L Sbjct: 69 LAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDR--EEILFTVRKALLRAQ 126 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + R +R +G+S M V+ + A +A VL+ GE+GTGKELAA+A+H Sbjct: 127 GEEARQQVRPTGGF---IGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVHD 183 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 ++ PFV ++C A+ ++LLE+ELFGYE+GAFTG+ + G E+AHGG Sbjct: 184 A--------SPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATR-KPGRVELAHGG 234 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDE+G++ +Q +LLRV++E+E+ R+GG Q V VDVR ++ATH LEE +++GRFR Sbjct: 235 TLFLDEVGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFR 294 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLFYRL+++ + +P LRER DI PLA FL+V P + L Sbjct: 295 EDLFYRLNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFT----LMTDGLAALRA 350 Query: 442 YDWPGNIRELRNMMERLALFLSVEPT------------PDLTPQFMQLLLPELARESAKT 489 WPGN+R+L+N +ERL + + P L P A E+ Sbjct: 351 QPWPGNVRQLQNFLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTV 410 Query: 490 P-------------APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P AL++ ++T AA LGISR T + +L+ Sbjct: 411 PVTDSARTLESQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLE 461 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 519 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 141/459 (30%), Positives = 224/459 (48%), Gaps = 26/459 (5%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSS-IGVV-TYQETIPALVAFQKTFNLRLDQRSYITEE 139 P IL+ +LQ+L + IGV + +E + L L + Sbjct: 3 PKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDGL 62 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 +I + A+ ++ + A +A G F + + + Sbjct: 63 AVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFHR 122 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + M G+S +E +R+ I A ++A VLI GE GTGKELAA+ I Sbjct: 123 LEEENLLWRQKAHRT-SHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMI 181 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ + P V VNC AI E L+E+ELFG+E+GAFTG+ R G F++A+ Sbjct: 182 HQ--------LSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHER-RRGRFDVAN 232 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG+M L Q ++LR+L+E+ RVGG + + VDVRV++AT+ +++ +++ GR Sbjct: 233 GGTLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGR 292 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DL+YRL+++ + +PPLR+R+ DI L E FL A + ++ A L Sbjct: 293 FRQDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAE----SAMGRKEIDPAVFGPL 348 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAK---------T 489 Y WPGNIRELRN +ER+ + + P P LP+ E+ Sbjct: 349 QQYSWPGNIRELRNFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREAR 408 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L++F + + A +G+ R+ R++K+ Sbjct: 409 SVFERAYLLRKLDEFAWNVSLTAAQVGLERSHLHRKMKA 447 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 137/480 (28%), Positives = 207/480 (43%), Gaps = 49/480 (10%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI V L + E L Q + + + Sbjct: 6 ILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDGDGQKF 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 Q+ + +V + A G F Y + D + + R Sbjct: 66 LEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQTYRQLL 125 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + G ++G+SP M ++RQ I A + A VLI GE+GTGKE+ A+ Sbjct: 126 RVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAR---- 181 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 R ++S F+ VNC AI+E+L+E+E FG+E GAFTG+ R G FE+AH G Sbjct: 182 ----EFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATER-REGRFELAHQG 236 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TL LDE+ E+P LQ +LLRVL+E+E RVGG + + V+VR+I+ ++ +L +++G FR Sbjct: 237 TLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFR 296 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DL+YRL++ + +P LRER DI LA+ FL+ + ++ L+ Sbjct: 297 QDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVT----GFADSARAALIG 352 Query: 442 YDWPGNIRELRNMMERLALFLS-------------VEPTPDLTPQFMQLLLPELARESA- 487 Y WPGN+REL+N +ER + + P P A A Sbjct: 353 YRWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAA 412 Query: 488 --------------------KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 K + AL + G++T AA LGIS T +L+ Sbjct: 413 VAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQ 472 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 138/512 (26%), Positives = 225/512 (43%), Gaps = 80/512 (15%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITE 138 + +LI ++ L K E + L Q + + ++ Sbjct: 1 MEKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMS 196 + ++ A + A +A G F Y + S R Sbjct: 61 LGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTR 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 ++++ +Y ++G S ++ ++ +TI A + +LI GETGTGKEL A Sbjct: 121 IKNHGEVILAEEEIDKY---GIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIA 177 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 AIHR +K + ++ +NCGAIA++L+EAELFGYE+GAFTG+ + G FE Sbjct: 178 HAIHRG--------SPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAA-SAKPGKFE 228 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 +A GT+FLDEIGE+P +Q +LL+VL+++ RVGG + + VDVR+I+AT+ +L ++++ Sbjct: 229 LADQGTIFLDEIGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIK 288 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G FR DL+YRL+++ +++PPLRER DI+PL FL L+ ++ Sbjct: 289 EGNFREDLYYRLNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMD----IKGIDPQVL 344 Query: 437 TVLLHYDWPGNIRELRNMMER--------------------------------------- 457 Y+WPGNIREL N++ER Sbjct: 345 ECFKKYNWPGNIRELENLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFE 404 Query: 458 -------------LALFLSVEPTPDLTPQFMQLLLPELARE--------SAKTPAPRLLT 496 L L E + + + L ++ +KT Sbjct: 405 EYLLREMENFTERLVLMARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKM 464 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ LE+ +G+ T AA LG SR ++ Sbjct: 465 IEKILEECSGNITHAAKRLGFSRKGLQIKMVK 496 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 132/453 (29%), Positives = 221/453 (48%), Gaps = 23/453 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + A A+A + I + + + + + + + + Sbjct: 8 ILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMHDFSGMEI 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 E ++ + A +A G + + ++ + Sbjct: 68 LKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKLVEKQNLV 127 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + L +Y L ++G S M++V + + ++A VLI GE+GTGKEL A+ I Sbjct: 128 RNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGKELIAKTI 187 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +K +P V +N AI E++LE+ELFG+E+G+FTG+ R G FE AH Sbjct: 188 HN--------NSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQ-RKGKFEYAH 238 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT FLDEIG+MPL Q +LLRVLE+ +TR+G ++ + VDVR+I+AT+ L +++G+ Sbjct: 239 RGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGK 298 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL++RL+++R++LPPLRER+ DI L ++F++ S + Q + +L Sbjct: 299 FREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKE----ILQITPEARKIL 354 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARE-----SAKTPAPR 493 L Y WPGNIREL+N +E + + + + + P ++ E+ Sbjct: 355 LRYQWPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDAE 414 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + + L G++ AA LGI T +R+L Sbjct: 415 IELIKCTLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 142/459 (30%), Positives = 220/459 (47%), Gaps = 25/459 (5%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYIT 137 P +LI +L +L K + + + + L + L + ++ Sbjct: 8 DAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMPDVS 67 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 ++ + ++ A A +A G F Y R A+ Sbjct: 68 GVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRAAEH 127 Query: 198 R--HNTHDATRNALRTRYVL--GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 R + + +R R +G+S +V + A + + VLI GE+GTGKE Sbjct: 128 RKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGTGKE 187 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 + A+ IH + + F+++NCGA+ ESLLE+ELFG+ +G+FTG+ + + G Sbjct: 188 VVARYIHD--------LSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKD-KTG 238 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 LF A+ GT FLDEIGE Q +LLR L+++EV VG + V VD RV++AT+ +LEE Sbjct: 239 LFAAANHGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEE 298 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 ++++G FR DLFYRL+++ + LPPLR+R DI LAESFL S Sbjct: 299 EIKRGGFRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEG--- 355 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFM-----QLLLPELARESA 487 + L+ Y WPGN+REL N +ER + S D P+ + + L+ E A S Sbjct: 356 -ALDALMAYGWPGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSP 414 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 A Q L+ G+K+ AA+ LGI +T +R+L Sbjct: 415 TLEAIERAYIQWVLQNEGGNKSRAADMLGIDPSTLYRKL 453 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 223/494 (45%), Gaps = 65/494 (13%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + +L + + + ++ + L + Sbjct: 5 ILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDGLAV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 Q++ + + ++ + A A G + + + A Sbjct: 65 LDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGDLR 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 ++A R++L T + +M G+SP ME +R I A + A VLI GE GTGKELAA+AI Sbjct: 125 RENEALRDSLPTAHA-DEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARAI 183 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A + P VAVNC AI E L+E+ELFG+E+GAFTG+ +AG FE+AH Sbjct: 184 H--------AGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGAD-SAKAGKFEMAH 234 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEIG+M L Q ++LR+L+E++ RVGGH+ + VDVRVI+AT+ NLE+++ G Sbjct: 235 KGTLFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGT 294 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL + L LPPLRER D+ L + F + + ++ L Sbjct: 295 FREDLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPAT----FAPDAQEAL 350 Query: 440 LHYDWPGNIRELRNMMERLALFLSV----------------------------------- 464 Y WPGN+RELRN +ER+ + + Sbjct: 351 ARYPWPGNVRELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAA 410 Query: 465 -----------EPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAAN 513 +P PD P LL P + A A L + G+ T A Sbjct: 411 SGTGGATGQGGDPLPDHLPDMAALLAPGM-DLKAARAAFEAQYLAARLAECGGNVTRLAE 469 Query: 514 YLGISRTTFWRRLK 527 +GI R+ +R+LK Sbjct: 470 AVGIERSHLYRKLK 483 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 138/451 (30%), Positives = 212/451 (47%), Gaps = 20/451 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ LA V + + L L + + + Sbjct: 7 ILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPGLNGLEL 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ---AFSDALDMTRMSLR 198 + ++ A + A A G+ + ++ +S++ Sbjct: 67 FRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRRTLAVSMQ 126 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + ++L M+QVR I A + A VLI GE+GTGKELAA+ Sbjct: 127 ERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTGKELAARM 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IHR ++ PFVA+NC AI E+LLE+ELFG+E+GAFTG+ + R G FE+A Sbjct: 187 IHRA--------SPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQA-RQGKFELA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDEIGE+PL LQ++ LRVL+E+ RVGG++ + DVR+I+AT+ +LEE+++ Sbjct: 238 SGGTLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVR 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL+YRL + + LP LR+R + L L+ + ++ Q + Sbjct: 298 RFREDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGRE----VQDIEQQALAA 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL--ARESAKTPAPRLLT 496 + Y WPGNIREL+N++ER + + T P ++ + + + Sbjct: 354 VAEYGWPGNIRELQNVIERAVILCKGQVTLLDLPGGVRQVTASGVIPKSNGSLRDRERND 413 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL ++ AA LGIS+ T RLK Sbjct: 414 ILDALATCGNNRRLAAEKLGISKRTLQYRLK 444 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 153/486 (31%), Positives = 220/486 (45%), Gaps = 55/486 (11%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ LA A E + L L + D Sbjct: 39 ILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLDL 98 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + + VV A EA G + Y + AL + R Sbjct: 99 LRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKALEKRRLR 158 Query: 202 HD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R LR R + +LG +P M+ +++TI A S VLI GETGTGKELAA+ + Sbjct: 159 QEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAARMV 218 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + F+A+NCGA E LLE+ELFG+E+GAF+G+ R R GLFE A Sbjct: 219 H--------LFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQ-RKGLFEAAE 269 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDE+GEM LP+Q +LLR ++E+ + RVGG +PVDVR+++AT+ +L + GR Sbjct: 270 GGTLFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGR 329 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ L++PPL ER+ D+ LA+ F + + P + VL Sbjct: 330 FRHDLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRP----APHIAPETLGVL 385 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQ---------------------- 476 Y +PGN+REL N++ER A+ + + P P ++ Sbjct: 386 ARYPFPGNVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPA 445 Query: 477 --------LLLPELARE-------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTT 521 +P A E + LE G++T AA L I R + Sbjct: 446 LVLRADEAARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRAS 505 Query: 522 FWRRLK 527 WR+LK Sbjct: 506 LWRKLK 511 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 223/476 (46%), Gaps = 45/476 (9%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 + + + L +A + + + AL + Q L + + Sbjct: 5 NVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLS 64 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 I E ++ A D A A G F Y + AL ++ Sbjct: 65 LLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYRE 124 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + + DM+G++P M++V + I +RSS +VLI GE+GTGKEL A A+H Sbjct: 125 QKQPNNAENILQ-SVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHALH 183 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 R + PF+A+N AI + L+E+ELFG+E+GAFTG+ + R G FE A+G Sbjct: 184 RH--------SPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQ-VRQGRFEQANG 234 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 G+LFLDEIG+MPL +QTRLLRVL E + RVGG+ PV VDVR+I+ATH +LE+ + +G F Sbjct: 235 GSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDF 294 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL++RL+++R+QLPPLR+R DI LA FL+ + L + + S ++ Sbjct: 295 REDLYHRLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVE----TKSLHEQSLKTMM 350 Query: 441 HYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFMQLLLPELAR--------------- 484 Y W GN+R+L N+ L + S E P P ++L + Sbjct: 351 EYVWSGNVRQLENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSL 410 Query: 485 -------------ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + P AL G K AA LG R T R+LK Sbjct: 411 WADEALGEGKENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLK 466 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 134/450 (29%), Positives = 201/450 (44%), Gaps = 19/450 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + + L + + + L + + D Sbjct: 5 VLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGSGVDY 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 I E + ++ A +A G F Y + Sbjct: 65 ARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQLQ 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + + +Y +LG S + + A + VL+ GETGTGKE+ AQAI Sbjct: 125 KRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQAI 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + PFVA+NC A + LLE+ELFGY+ GAFT + R + GL E A+ Sbjct: 185 HN--------NSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRD-KKGLIEEAN 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIGEMPL LQ++LLRVLE E +VG +P V+VR+I+AT+ +L+E+ Q+G Sbjct: 236 TGTIFLDEIGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGH 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL++ + LPPLRER DI LAE F+ + A ++ A L Sbjct: 296 FREDLYYRLNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQK----VTPAFIEKL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTPAPRLLTP 497 ++W GNIREL+N++ER + + L + + L Sbjct: 352 QLHEWKGNIRELKNVLERAVIMAGGDDLAVEHLPLDLQIADKASTPLSAFDLASVEKLHI 411 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L +KT AA L I T +R+++ Sbjct: 412 IRVLYHTKNNKTEAARLLNIGLATLYRKIE 441 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 153/458 (33%), Positives = 225/458 (49%), Gaps = 23/458 (5%) Query: 79 LSVPVILIKPSGYDVLQALA-KAGKLTSSIGVV-TYQETIPALVAFQKTFNLRLDQRSYI 136 L+ IL + + ++ + ++ + V + AL + + Sbjct: 11 LNRLKILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGM 70 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTR 194 G+ EL + V+ D A A G F Y + AL + Sbjct: 71 NGIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAA 130 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 N A ++ L +++G S M+QVR+ I A + + VL+ GETGTGKEL Sbjct: 131 KREWVNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKEL 190 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+H++ + PFVAVNCGA+ ESL+E+ELFG+ +G+FTG+ R GL Sbjct: 191 VARAVHQQ--------SLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGAD-DHRVGL 241 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+AHGGT+FLDEIGE+P +Q +LLRVLE E+ RVG + VDVRV+ ATH NL E Sbjct: 242 FEVAHGGTIFLDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEM 301 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ G FR DL YR++ L +PPLRER+ DI LA L+ L L A + Sbjct: 302 VEAGDFREDLMYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTC----FTPE 357 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLL-----LPELARESAK 488 + +L + WPGN+REL N++E ++ P P+ PQ + Sbjct: 358 AVQLLEKHGWPGNVRELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPIS 417 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + +AL++ NG+K AA LGIS T + +L Sbjct: 418 LRDLEMQAIHEALDRHNGNKPEAAEELGISLKTLYNKL 455 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 143/465 (30%), Positives = 216/465 (46%), Gaps = 43/465 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL +L+ L + + + +E + + A Q + + Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMPRMDGLQL 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 ++ + +V A A +A G Y A + +S Sbjct: 68 LKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRALSFSRLV 127 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + R + ++G SP M+ + ++I A A VL+ GETGTGKEL A+AIH Sbjct: 128 VEN-RFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELVARAIH- 185 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 A + + FVAVNC AI +LE+ELFG+E+GAFTG+ + R G FE+A GG Sbjct: 186 -------AASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKE-RIGKFELADGG 237 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDE+ EMP+ LQ +LLR L+E + R+GG++P+ VD+RV++AT+ N + ++ G+ R Sbjct: 238 TLFLDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLR 297 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL++ R+ LP L+ R +DI LA FL + VL+ Sbjct: 298 EDLYYRLNVFRIDLPALKARKSDIELLATHFLAK-----------RRVDISAQAVQVLMQ 346 Query: 442 YDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESA------------- 487 YDWPGN+REL N++ER A+ + P P M E +A Sbjct: 347 YDWPGNVRELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQN 406 Query: 488 ------KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 +AL + NG+K+ AA L IS + W +L Sbjct: 407 PLCLPNAVEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKL 451 >UniRef50_A6GNB9 Propionate catabolism operon regulatory protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GNB9_9BURK Length = 525 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 203/532 (38%), Positives = 308/532 (57%), Gaps = 37/532 (6%) Query: 17 VSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLK 76 S++ L R+I+ ++ ANI + +E A+ Y R + + D IAAGSNGA+L+ Sbjct: 2 FSISALAGTLREIARDYAGSANIELVPKAYEDALAYARNRYYTDTADVFIAAGSNGAFLQ 61 Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYI 136 ++L P+++I+ G+DV+QALA A K ++++G+V+Y+ + L F + F++ L+ R+Y Sbjct: 62 NQLEAPLVIIRTDGFDVMQALASARKASAAVGLVSYEHSFEELEQFARAFDVPLNTRTYR 121 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 T EDAR + EL G + VVG+GL+T++A+E G+ I IYS V +AF +A+ + Sbjct: 122 TPEDARRAVRELAQLGVKVVVGSGLVTEIAQEMGLEAILIYSRQGVVKAFEEAIRLASAK 181 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + T + D++G S +E++R TI L +VLI+GETG GKEL A Sbjct: 182 ASGGVRR--NSQAYTYHNEQDLIGNSKAVEKLRNTIRLCGSIDFSVLIQGETGVGKELVA 239 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 Q+IH + PFVA+NC ++ ESLLE+ELFGYEEGAF+G+ +GGRAG+FE Sbjct: 240 QSIH--------TSSPRAGKPFVAINCASLTESLLESELFGYEEGAFSGAVKGGRAGMFE 291 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGT+FLDEIG+MPL QTRLLR+LE+ V R+G P VD R+++A++ NL++ ++ Sbjct: 292 SAQGGTVFLDEIGDMPLAFQTRLLRILEDSTVRRIGSASPRKVDFRLLAASNVNLQQAVE 351 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +GRFR DL++RL+ + + +PPLRER DI LA FL+ + +S + + L + Sbjct: 352 EGRFREDLYFRLNEMLIHIPPLRERTEDIAELAGYFLRTTPVRVSK---SRFDEFLHLAL 408 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEP--------TPDL----------------TP 472 +L WPGNIR+L+N+ R A+ + E PDL P Sbjct: 409 PILQSLPWPGNIRQLKNVCRRAAVMMLQESDLSSWPTWFPDLMVDSQNSALSPGQLKDLP 468 Query: 473 QFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWR 524 + + S R ++AL+ G+ A LGISR+T WR Sbjct: 469 GPIDSMNALALAYSRAPKHGRAEIVREALKVVGGEVNKVAEGLGISRSTVWR 520 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 136/448 (30%), Positives = 217/448 (48%), Gaps = 34/448 (7%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + +LI D+ AL + + + + + + + + Sbjct: 1 MKSVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 +I + V+ + A A G Y +L + + Sbjct: 61 LQLLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLIPEQ 120 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 +++ +S +M ++ + + AR+ VL+ GE+G GKE+ A+ Sbjct: 121 -----------------DEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARY 163 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH+ + + PFVA+NC AI E+LLEAELFG+E+GAFTG+ + G FE+A Sbjct: 164 IHKH--------SPRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATER-KPGKFELA 214 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 + GT+ LDEI EM LQ +LLRV++EKE+ RVGG +P+P+DVR+I+ T+ +L E++++G Sbjct: 215 NKGTILLDEISEMAYRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKG 274 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLFYR+++ +++PPLRER DI+PLAE FLK +S F+ + + Sbjct: 275 NFREDLFYRINVFPIRIPPLRERSDDIIPLAEFFLKRLSNKMSKNFT-----ITEDMKKF 329 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ 498 LL W GN+REL N + R A+ L + L E ++ K Sbjct: 330 LLKKSWQGNVRELENFIYRSAVLSQDGILR-LHEDEINLFEEEKPVKAGKLKDAERELIV 388 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRL 526 AL+K G++T AA LGIS T ++ Sbjct: 389 DALKKTEGNRTKAAKILGISVRTLRNKI 416 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 134/466 (28%), Positives = 214/466 (45%), Gaps = 31/466 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + + + + + + +E + + L Sbjct: 1 MEKILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 + + E ++ + A E+ G F Y + + + + Sbjct: 61 IEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQ 120 Query: 199 HNTHD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + + ++G+S +++ + AR + VLI GE+GTGKE+ A Sbjct: 121 TLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH +K F+A+NC +I LLE+ELFG+E+GAFTG+ G + GLFE Sbjct: 181 RAIHD--------LSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGAS-GRKKGLFE 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 AH GT+FLDEIGEM + +Q +LLRVL+E+ + RVG + + +D RVI+AT+ NL + ++ Sbjct: 232 EAHHGTIFLDEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIE 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + FR DLFYRL++ + +PPLRER ADI LA FL + F R +E Sbjct: 292 EKSFREDLFYRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDF----RDVSPEAE 347 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEP-TPDLTPQFMQL-------------LLPEL 482 ++ Y WPGN+RELRN++ER+ + S P+ PQ ++ + Sbjct: 348 QLMAQYAWPGNVRELRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAAD 407 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 A QQAL+K + A L I R T +++ Sbjct: 408 LGLEEAVSAIEKSLIQQALQKTGWNVLQTAANLKIPRGTLRYKMEK 453 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 207/465 (44%), Gaps = 34/465 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETI---PALVAFQKTFNLRLDQRSYITEED 140 IL+ D+L L++ + + + + + L + + Sbjct: 5 ILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDGLG 64 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA--FSDALDMTRMSLR 198 + + N ++ A + A EA G F Y R+ + Sbjct: 65 VMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKWQQL 124 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + R L + ++G S M + I A++SA VLI GE+GTGKEL A+ Sbjct: 125 QKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVARE 184 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +H+ +K F+ +NC + ES++E+ELFG+ G+FTG+ R + GL E A Sbjct: 185 LHKH--------SLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRD-KKGLIEEA 235 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 + GTLFLDEIG++ + +Q +LLR+L+E E +G + VD+R I+AT+ NL E +++G Sbjct: 236 NHGTLFLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRG 295 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLFYRL+++ + +PPLRER+ DI L SFL+ +++ + Sbjct: 296 EFREDLFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHK----NIKRVSPVTLNA 351 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPEL---------------- 482 L+ DWPGN+REL N +ER + S P Sbjct: 352 LMQRDWPGNVRELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFK 411 Query: 483 ARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + +AL + +G+ + AA G+ R R ++ Sbjct: 412 EAKDKLIEEFQSQYISKALARHSGNVSQAARESGLKRQYLHRLMR 456 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 144/462 (31%), Positives = 215/462 (46%), Gaps = 30/462 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ + L +V + E + L + + + Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +++ L+ + +V A + A EA G Y +R + ++ Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 202 HD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 D R L +++G +P M +V + A + A VL+ GETGTGKEL A+AI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR R ++ PFVAVNC AI + L+E+E FG+E+GAFTG+ R G FE A Sbjct: 802 HR--------RSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAV-ARRVGRFEQAD 852 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G TLFLDE+G++ L +Q +LLRVL+E+E+TRVG P+ VDVR+++AT+ +LE + +GR Sbjct: 853 GSTLFLDEVGDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGR 912 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++ L+LPPLRER D+ L E FL+ L A+ Sbjct: 913 FRDDLFYRLNVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAA---- 968 Query: 440 LHYDWPGNIRELRNMMERLALF----------LSVEPTPDLTPQ---FMQLLLPELARES 486 Y WPGN+RELRN+ ER L TP + LP L Sbjct: 969 RAYPWPGNVRELRNLCERAVLMGWAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQ 1028 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L++ G A GI+ + ++K+ Sbjct: 1029 RLVERFEREYLTRLLKERRGRIGEVARAAGIAERNLYEKMKA 1070 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 150/489 (30%), Positives = 223/489 (45%), Gaps = 54/489 (11%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + Q+ + T ++ I + + + + Sbjct: 1 MAKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ-----AFSDALDMT 193 A I E+ A ++ A T+ A EA G F Y A++ Sbjct: 61 LTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAG 120 Query: 194 RMSLRHNTHDATRNALRTRYVLGD-MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 R A + + LG+ ++G S M QV + I A + A VL+ GE+GTGK Sbjct: 121 RRMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGK 180 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A+A+++ + PF+ +NC AI ++LLE+ELFGYE+GAFTG+ R Sbjct: 181 ELVARAVYQH--------SLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGAT-NRRV 231 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G E A+GGT+FLDEIG+MPL +Q +LLR+L+EK++ R+GG QP+PVDVR+I+AT+ +LE Sbjct: 232 GKIEQANGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLE 291 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 + GRFR DL+YRL ++ L LPPLRER DI PLA FL + P Sbjct: 292 AAVADGRFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPN----PGIT 347 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARESAK--- 488 + L WPGN+REL N + + +F P + Q ++ Sbjct: 348 PEALAYLEAQPWPGNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACD 407 Query: 489 -----------------------------TPAPRLLTPQQALEKFNGDKTAAANYLGISR 519 L ++AL G++T AA LG+SR Sbjct: 408 LSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSR 467 Query: 520 TTFWRRLKS 528 T +++ Sbjct: 468 PTLLAKIEK 476 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 201/486 (41%), Gaps = 52/486 (10%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 V ILI + + L + + +V + I L + Sbjct: 10 VSTILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFALPDLILLDIMMPGMDG 69 Query: 139 EDARGQINE--LKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 + ++ + + A T G Y + + T +S Sbjct: 70 FETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLS 129 Query: 197 LRH-------------------------------NTHDATRNALRTRYVLGDMLGQSPQM 225 LR + R ++ +++ QS Sbjct: 130 LRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIKQTKNFDEIVTQSKAF 189 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 ++V +++ A ++ VLI GE+GTGKEL A+A+H +K+ P V +NC A Sbjct: 190 QKVLRSVEQVAPTNTTVLILGESGTGKELLARAVHN--------LSSRKNKPLVKINCAA 241 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 + +L+E+ELFG+E+GAFTG+ + G FE+A GGT+FLDEIGEMPL LQ +LLRVL+E Sbjct: 242 LPATLIESELFGHEKGAFTGATAQ-KVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQE 300 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 E RVG + + V+VRVI+AT+ +LE + +GRFR DL+YRLS+ + PLR R DI Sbjct: 301 GEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKEDI 360 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE 465 L F A A + L Y WPGNIREL N+++R + Sbjct: 361 PLLVRHF----CAKHGADMGKTIDTIPATVLDTLTDYHWPGNIRELENLVQRALIMSPGR 416 Query: 466 PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKT---AAANYLGISRTTF 522 + + L LE + + AA L + TT Sbjct: 417 TL-VIGDWLRKKPLANQKATLMTMEEAERAHIISVLELTHWKVSGDNGAARLLDMIPTTL 475 Query: 523 WRRLKS 528 R+K Sbjct: 476 DSRMKK 481 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 132/453 (29%), Positives = 220/453 (48%), Gaps = 30/453 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ +L+ + + + +E++ + + + T + Sbjct: 4 ILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLEI 63 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + ++ A + A EA G Y + + + Sbjct: 64 LESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDID--------NLIKIIDF 115 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + + ++G+S +M+ + + I + ++S +++LIEGE+GTGKEL A+AIHR Sbjct: 116 YIKKQENFDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHR 175 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 R + + PF+ +NC AI L E ELFG+E+G+FTG+ G E+A G Sbjct: 176 --------RSKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNRE-IGKIELAGEG 226 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIGEMPL +Q +LLRVL+E+E RVGG + + + RVISAT+ NLEE ++ FR Sbjct: 227 TLFLDEIGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFR 286 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLFYR++++ L++PPLRER DI L + F+ + + + +L++ Sbjct: 287 EDLFYRINVIHLKIPPLRERKEDIPLLVKKFIDKFSKINNK----NVYDIDNDALEILMN 342 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELAR------ESAKTPAPRL 494 YDWPGN+R+L N++ER + E + P ++ +++ S Sbjct: 343 YDWPGNVRQLENIIERAVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEK 402 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L++ N ++T AA LGISR ++K Sbjct: 403 NIILKVLQEENFNQTRAAQKLGISRKQLRTKMK 435 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 143/477 (29%), Positives = 228/477 (47%), Gaps = 45/477 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI V +L + + I + L + + + Sbjct: 6 ILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDMGGLEI 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT--VRQAFSDALDMTRMSLRH 199 Q+ E ++ A + + A G + + + + + Sbjct: 66 LKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALETTRLR 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA-VLIEGETGTGKELAAQA 258 ++ R +R R+ D++G S +M ++ + A S A +L++GE+GTGK+L A+A Sbjct: 126 TEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAKA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + ++ PFVA+NC AI E+L+EAELFG+E+GAFT + + + GLFE A Sbjct: 186 IHYQ--------SRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDA-KAMKKGLFEAA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDEIGE+ LQ +LLRVLE++ + RVGG + + VDVRVI+A++ +LE+ ++ G Sbjct: 237 DGGTLFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR+DL+YRL+I+ + LPPLR+R DILPL E F++ + F ++R + + Sbjct: 297 TFRQDLYYRLAIISVFLPPLRDRKEDILPLVEFFIE----RYNRKFKKSIRGVTDNTRRL 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDL---------------------------T 471 L+ +DWPGN+REL+N +ER + E Sbjct: 353 LMKHDWPGNVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQL 412 Query: 472 PQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 P L + + A+++ NG++T AA L ISR +LK Sbjct: 413 PNGRSLPRLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKK 469 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 514 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 139/459 (30%), Positives = 221/459 (48%), Gaps = 27/459 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + + QA+ ++ + E + + + + + + Sbjct: 18 VLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDGMEV 77 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRMSLRH 199 + E +V A EA G F + + A+ Sbjct: 78 LARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADAVRLR 137 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 T+ L R+ ++ S +M+QV + A + A+VLI GE+GTGKEL AQAI Sbjct: 138 QTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELVAQAI 197 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ +KS VA+NC A+AE+L+E+ELFG+ +GA+T + R G FE A+ Sbjct: 198 HQ--------NSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDAL-NDRMGAFEYAN 248 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDE+G+MPL Q +LLRVLEE ++TRVG ++P+ V+VR++SAT+ LE+ ++ G Sbjct: 249 GGTLFLDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGT 308 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL ++ ++LP LR+R DI+PLA+ F + + P + L Sbjct: 309 FRADLYYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPN----KGISPVVSRRL 364 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEP--TPDLTPQFMQL--------LLPELARESAKT 489 YDWPGN+R+LRN +E + + + DL P+ + Sbjct: 365 FSYDWPGNVRQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPL 424 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ L+ +G++ AA LGI T +R+L Sbjct: 425 DNIERWAIEETLKLTSGNREEAARILGIGARTLYRKLDK 463 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 514 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 214/468 (45%), Gaps = 37/468 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + AL + + E + + + + + Sbjct: 8 ILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGMGGMEV 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV-RQAFSDALDMTRMSLRHN 200 I ++ ++ A + A EA G + + + + Sbjct: 68 LKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMATYEEK 127 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 ++ + + +++ + ++ + + + A+S ++VLI+GE+GTGKEL A+ + Sbjct: 128 EFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELFARYL- 186 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 ++ PFVA+NC AI ++LLE+E+FG+E+GAFTG+ + + G FE+A+G Sbjct: 187 -------YLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQR-KVGKFELANG 238 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTL LDE+ EM LQ +LLRV++EKE+ R+GG P+PVDVR+I+ T+ ++ + +++ F Sbjct: 239 GTLLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTF 298 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YRL+++ L++PPLRER D+ L FLK P + L Sbjct: 299 REDLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPL----PVFANGTLKRLN 354 Query: 441 HYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPELARESAKTP--------- 490 YDWPGN+REL N++ER L P+ Q + A E Sbjct: 355 AYDWPGNVRELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDIS 414 Query: 491 -----------APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L+K G+KT A+ LGIS T +L+ Sbjct: 415 GIDLSRGMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQ 462 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 206/453 (45%), Gaps = 21/453 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVT--YQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + + + + +E + A + + + + Sbjct: 6 ILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMVL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 ++ ++ ++ A A EA G + + + Sbjct: 66 LEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALEVGSLR 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R +R RY +++ S +M+QV + A + + V + GE+GTGKEL A+ + Sbjct: 126 MEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKVL 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + PFVA+NCGAI E LLE+ELFG+ +GAFTG+ + + GL + A Sbjct: 186 H--------LTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQA-KKGLLQQAE 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLF+DEI E+ LQ +LLRV ++ E VGG QPV VD R+++AT+ +L + +Q G+ Sbjct: 237 RGTLFMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGK 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YR+ ++ + LPPLRER DI LA FL+ ++ + + L Sbjct: 297 FREDLYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNK----NIPGFSPDAMHRL 352 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT----PDLTPQFMQLLLPELARESAKTPAPRLL 495 + + WPGN+REL N++ER + L + + EL +A Sbjct: 353 MLHRWPGNVRELANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARDEFERA 412 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 Q L G+ + AA G R F++ L+ Sbjct: 413 YLIQVLHSTKGNVSRAAAKAGRYRAEFYKLLRK 445 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 139/450 (30%), Positives = 210/450 (46%), Gaps = 18/450 (4%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEED 140 IL+ + LA K + + E + + + L + + + Sbjct: 4 NILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKSGLE 63 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV---RQAFSDALDMTRMSL 197 + + A + A + A A G F + + R Sbjct: 64 LFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALESVE 123 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 R + ++ R+ +++ M+ VR+ I A S+A VLI GE+GTGKEL A+ Sbjct: 124 RERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKELVAR 183 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 IH +K F+ +NC AI E+LLE+ELFG+E+GAFTG+ + R G FE+ Sbjct: 184 MIH--------LLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQA-RRGKFEL 234 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGT+FLDEIGEMP LQ +LLRVL+E+ RVGG + +VRVI+AT+ +L ++ + Sbjct: 235 AEGGTIFLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAE 294 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 RFR DLFYRL++ + +PPLR R+ + LA F + + Sbjct: 295 KRFRDDLFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKL----KGINPEALR 350 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP 497 ++ Y WPGNIREL+N++ER + E T P + E + Sbjct: 351 LMKAYHWPGNIRELQNVIERGVILAREELTAPELPAMIAGKETEGGPKVGILKDIERNCI 410 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +AL+ G++ AA LGIS+ T RLK Sbjct: 411 LEALKNNRGNRRMAAETLGISKRTLQYRLK 440 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 141/455 (30%), Positives = 215/455 (47%), Gaps = 24/455 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLT--SSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ +L+++A + + QE I + L + D Sbjct: 6 ILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDGDGFDV 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 + + + ++ D A EA G F + + Sbjct: 66 LAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALSQRKVV 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + L R+ L +++G +M++V + A + A VLI GE+GTGK L A+AI Sbjct: 126 EENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSLLARAI 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR R ++ FV V CGA+ ESLLE+ELFG+ G+FTG+ G + G F A Sbjct: 186 HR--------RGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGAT-GDKIGKFTQAD 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIG LQ +LLRVL+E E VG + VD RVI AT+ LE+ + GR Sbjct: 237 KGTIFLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGR 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DL+YR++++ +++PPLRER+ADI LA FL+ + + T + Sbjct: 297 FRQDLYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKR----SQGFSDDVITAM 352 Query: 440 LHYDWPGNIRELRNMMERLALFLSVE--PTPDLTP-----QFMQLLLPELARESAKTPAP 492 Y+WPGN+REL+N++ER L DLTP Q + + +P Sbjct: 353 QRYNWPGNVRELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESP 412 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 LE ++ A A+ LGI+RTT ++++K Sbjct: 413 ERAIILDVLEMHQWNRNATADALGINRTTLYKKMK 447 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 129/460 (28%), Positives = 221/460 (48%), Gaps = 30/460 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + +L K V E + + + + + + + + Sbjct: 5 ILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMNGMEL 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 +I + ++ A + A A G + Y A + + Sbjct: 65 LKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQHKNTT 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 R +++ + +++G S M+++ +T+ + + +LI+GE+GTGKE A A+ Sbjct: 125 AEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEKIAGAV 184 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H G+K PF+ V+C A+ +LE+ELFG+E+G+FTG+ + R G FE+A+ Sbjct: 185 HYH--------SGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKT-RRGRFELAN 235 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GG++FLD++ ++PL +Q +LLRV++E+ RVGG + + ++VR+I AT +L ++G Sbjct: 236 GGSIFLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGE 295 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++ + +PPLRER DI L FLK ++ AL + + VL Sbjct: 296 FREDLFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRH----EDALPGVSRETLNVL 351 Query: 440 LHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQL------------LLPELARES 486 + Y+WPGN+REL N++E F S T D P +++ + + Sbjct: 352 MEYNWPGNVRELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLH 411 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + A +K NG++ A LGI RTT +L Sbjct: 412 DVLTEVEKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKL 451 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 130/453 (28%), Positives = 211/453 (46%), Gaps = 19/453 (4%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYIT 137 +L+ V ++L + + + + + + + ++ Sbjct: 3 GRLKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVS 62 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS--DALDMTRM 195 + +I ++ A + A +A G Y + + Sbjct: 63 GFEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQ 122 Query: 196 SLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 + + R + + +++G S M+Q+ I A+ + +L+ GETGTGKE+ Sbjct: 123 KKIVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGKEMV 182 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH A ++ PFV +NCGA AE+LLE+ELFG+E AFTG+ R + G Sbjct: 183 AKAIH--------AMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRA-KKGRL 233 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E+A GGTLFLDE+GE+PL +Q LLRVLEEK TRVGG + VD R+I ATH +L ++ Sbjct: 234 EMASGGTLFLDEVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEI 293 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 ++G FR+D +YRL+++ +++PPL R+ DI LA+ FL+ + P + Q Sbjct: 294 ERGAFRQDFYYRLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKP----VVGIRQQG 349 Query: 436 ETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLL 495 L Y WPGN+REL N +ER + F+ + +S Sbjct: 350 IEFLKSYPWPGNVRELENAIERAVVLAKERYLTRDDFAFLCRSPAQPFPQS--LRENEKQ 407 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ L + + AA L ISR T +++ Sbjct: 408 HLERILSFCGWNISKAAAILEISRVTLHSKIRK 440 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 204/475 (42%), Gaps = 43/475 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + +L+ + E I L F+ L + D Sbjct: 6 ILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDADGLDL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 Q + ++ A D A A G Y Sbjct: 66 LQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFEKRQLR 125 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA-AVLIEGETGTGKELAAQA 258 D R LR + ++G S M + + I + A + A VLI GE+GTGKEL A+A Sbjct: 126 EKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKELVARA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + PF VNC AI E+LLE+ELFG+E+GA+T + + R G+FE+A Sbjct: 186 IHNH--------SARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKR-RKGIFELA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGT+FLDEIG+MP +Q ++L+V+E K R+G + + DVR+I+ATH +L +++ Sbjct: 237 EGGTVFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKER 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DLFYRL+++ + LPPLRER DI L + F++ + + Sbjct: 297 RFRGDLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRR----VEGVSPETMAY 352 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESA----------- 487 L Y WPGN+RELRN +ER + + E A+ + Sbjct: 353 LTGYGWPGNVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQH 412 Query: 488 --------------KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + LE G++T AA YL +SR T R+K Sbjct: 413 SFARGHITIPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKK 467 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 513 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 131/456 (28%), Positives = 208/456 (45%), Gaps = 26/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ L + S VV + + L + Q + + Sbjct: 7 ILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMPGLDGFEL 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + + + +V A D+ A G Y V L +++ Sbjct: 67 LQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKTLNINRMK 126 Query: 202 HDATR--NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 +R + +Y +++GQSPQM+ + ++I ++S+A VLI GE+GTGKELAA+A+ Sbjct: 127 SRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGKELAAKAV 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H K PFVAVNC A + LE+ELFG+ +GAFT + R G FE+A+ Sbjct: 187 HY--------NGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRD-HMGRFELAN 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDE+G++P +Q +LLRVL++K RVG +P+ D R+++AT+ +L++ +++G+ Sbjct: 238 KGTLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGK 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++ + P LRE DI L FLK +++ + ++ Sbjct: 298 FREDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGR----SIKTLSMHAMKIM 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAK--------TP 490 Y WPGN+R+L N +E A P + E Sbjct: 354 QEYRWPGNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLPEVVE 413 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 +ALE+ K AA LG+S ++ Sbjct: 414 RIEKHMILRALEQNQWVKAHAARTLGVSERVVSYKM 449 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 138/458 (30%), Positives = 211/458 (46%), Gaps = 30/458 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + QAL + + E I +F+ + + + + Sbjct: 5 ILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLDGLEV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 ++ + N T ++ A EA G + + + + Sbjct: 65 LKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTNRQLT 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 +D R + +RY +++G+S + + + I + A VLI GE GTGKEL A+AI Sbjct: 125 EENDRLRETIESRY---EIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARAI 181 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR + PF+ VNC AI L+E+ELFG+ +G+FTG+ RAG FE AH Sbjct: 182 HRG--------SQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIAD-RAGKFEQAH 232 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG+M Q ++LRVL++ VTR+GG +PV VDVRV++AT+ +LEE++ GR Sbjct: 233 GGTLFLDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGR 292 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + +P LRER DI L FL+ P R + L Sbjct: 293 FREDLYYRLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLP----ARSISDEALQRL 348 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKT---------- 489 DWPGN+RELRN MERL + S + Sbjct: 349 SELDWPGNVRELRNTMERLVILASAASISVADIDRLAGRRTAEPSGIGSLLDCNTFEEFK 408 Query: 490 PAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 A L F+ + + A L + R+ +++++ Sbjct: 409 QAAERAFLLAKLRAFDWNVSETARALDMPRSNLYKKIE 446 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 151/450 (33%), Positives = 216/450 (48%), Gaps = 22/450 (4%) Query: 84 ILIKPSGYDVLQALAKAG--KLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ D L+ L + + + V E I L + + + + Sbjct: 8 ILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMPKVDGFSV 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV-RQAFSDALDMTRMSLRHN 200 + E + D A A TG Y + A+D LR Sbjct: 68 IRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHALARLRLK 127 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + A R +Y ++G+S M QV + I A SSA VLI+GE+GTGKEL A+AIH Sbjct: 128 KQASPSAAPRRQY---GIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIARAIH 184 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + PFV VNCG I E LLE+ELFGY +GAFTG+ G RAG F+ A Sbjct: 185 YG--------SRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAA-GSRAGFFQTADR 235 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+ LDEI E LP+Q +LLRVL+E E+ +G +P V++R+++AT+ L E ++QG F Sbjct: 236 GTILLDEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLF 295 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DLFYRL+++ + PPLR+R DI+ L F+K + +A +L Sbjct: 296 REDLFYRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGR----TPPRLSEALLGILR 351 Query: 441 HYDWPGNIRELRNMMERLALF--LSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQ 498 Y WPGN+REL N++ RL + PDL P FM+ + + Sbjct: 352 AYHWPGNVRELENVIHRLLSMPSSTTLDIPDLPP-FMRFSAVGEGSLNRTLAEVEAEHVR 410 Query: 499 QALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L+ G+KT AA LG+ R T +L+ Sbjct: 411 RVLDSVGGNKTLAARILGVDRKTLRAKLRK 440 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 143/461 (31%), Positives = 215/461 (46%), Gaps = 32/461 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + + + V T + A A + + Sbjct: 16 ILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLTM 75 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + E + T ++ A + A G Y + +S Sbjct: 76 LPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAMR 135 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + LR G+++GQSP M Q+++T+ A + VL+ GE+GTGKEL A+A+H Sbjct: 136 RE--NAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHY 193 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + + FV VNCGA+ +SLLE+ELFG+ GAFTG+ + GLF A GG Sbjct: 194 QG--------ARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGA-EQAKRGLFLAADGG 244 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIGE+PL LQ +LLR L++ E+ VGG +P VDVRV++AT+ +L+E + QG FR Sbjct: 245 TLFLDEIGELPLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFR 304 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLFYRL+++ +++P LRER D+ LA+ F A+ + A A+ L Sbjct: 305 EDLFYRLNVITIEVPALRERREDVPVLAQHF----AASAARRARRACPDISPAALEWLAA 360 Query: 442 YDWPGNIRELRNMMERLALFLSVEPT---------------PDLTPQFMQLLLPELARES 486 WPGN+R+L N +ER + + + P + A + Sbjct: 361 QPWPGNVRQLENAIERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDL 420 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + LE G KT A+ LGI+RTT W++L+ Sbjct: 421 LSLDELERLHILRVLEACGGQKTKASAVLGINRTTLWKKLR 461 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 225/461 (48%), Gaps = 28/461 (6%) Query: 83 VILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 ILI + + +AL + + T + +L + Q Sbjct: 16 NILIVDADQTLAKALEQMLSDQGHHVEKLCTGKAAFESLARKTPELVILDLQLPDTDGWH 75 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLR 198 Q+++L VV +++ A + G Y + + + Sbjct: 76 VFEQVSDLGDACPVVVVTGRELSEQAVTTLLNGPGDYLRKPISAEELAAVVQRTLENIRL 135 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSA-AVLIEGETGTGKELAAQ 257 R+ Y ++ S +M QV + + A S A V I+GE+GTGKEL A+ Sbjct: 136 RKELACLRSQKGGCYDQPSIVACSREMGQVLEMVDKIASSDAATVFIQGESGTGKELVAR 195 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH + + S PF+A+NC A+ ++LLE+EL G+E+GAFT + + + GLFE+ Sbjct: 196 AIHYQ--------SARASQPFMAINCAAVPQTLLESELMGHEKGAFTDA-KNVKKGLFEL 246 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGT+FLDEIG+M +Q +LLRVLEE+ RVGG + + VDVR++SAT+ +L + M+ Sbjct: 247 ADGGTVFLDEIGDMDPAMQAKLLRVLEERTFRRVGGTRDIKVDVRIVSATNRDLHKAMED 306 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YR+ ++ +Q+PPLRER DILPLAE F++ + +R + ++ Sbjct: 307 KSFRPDLYYRIGVIPVQIPPLRERRDDILPLAEFFIRQFNREFNKK----VRGISRMAQK 362 Query: 438 VLLHYDWPGNIRELRNMMERLALF-LSVEPTPDLTP---------QFMQLLLPELARESA 487 +LL Y WPGNIRELRN++ER + + + P + L +L E Sbjct: 363 ILLEYSWPGNIRELRNVIERSVILECEEQLLVENLPRELVAQSVGDNIGPLNFQLPPEGV 422 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +QALE G++T AA L + F R+K Sbjct: 423 DIEDIERELIRQALEMAQGNQTQAAKLLRLGIDAFRYRMKK 463 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 140/468 (29%), Positives = 207/468 (44%), Gaps = 31/468 (6%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRS 134 R +LI ++++AL ++ + AL + L Sbjct: 5 QRNPRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMP 64 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 + E + ++ A EA G F Y R + Sbjct: 65 GTDGIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRA 124 Query: 195 MSLRHNTHDATR-NALRTRYVLGD----MLGQSPQMEQVRQTILLYARSSAAVLIEGETG 249 M +R + R ++G P + +V Q I A ++A VL+ G +G Sbjct: 125 MEVRRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSG 184 Query: 250 TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRG 309 TGKEL A+A+H ++ P V VNC + E+LLE+ELFG+E+GAFTG+ R Sbjct: 185 TGKELVARAVH--------GNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADR- 235 Query: 310 GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 369 + GLFE+A GGTLF+DE+ EM LQ +LLRVLE+ RVG Q DVR+I+AT+ Sbjct: 236 PKPGLFEVAEGGTLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNK 295 Query: 370 NLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALR 429 LE + + GRFR DLF+RLS++ + LP L++R D+ L + FL + Sbjct: 296 PLEAEQKAGRFREDLFFRLSVITVDLPALKDRREDVPELIQHFL------HTRQVGRGPM 349 Query: 430 QGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQL--------LLP 480 A+ ++L YDWPGNIREL N++ER + PD P + P Sbjct: 350 TVDPAARSLLCRYDWPGNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEP 409 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L + G+K AA LG+SR T +R + Sbjct: 410 APTTGPDDLDRVERHHVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDK 457 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 151/518 (29%), Positives = 242/518 (46%), Gaps = 33/518 (6%) Query: 22 LFELFRDISLEFDHLANITPIQL---GFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR 78 L + ++ D + ++ + Y+ + + + I++A S L Sbjct: 69 LDGIAEGTNIHIDFRGHTFVLRKEHTTINDQLYYVYLFSSVKGLEEILSASSEKTELLET 128 Query: 79 LSV----PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRS 134 + V+++ GY + + A L + V + + + + + ++ Sbjct: 129 VMEFAFDGVVMVDKDGYITMLSKEYAEFLNVRVEDVIGKHATDVIENTR----MHIVAKT 184 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 E +I G + I E G G ++ + + + Sbjct: 185 GKPEVADLQRIK-----GDYMIATRVPIIKNGEITGAVGRVLFQNVGGFNSLYKRVKLME 239 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 L+ + R + Y ++G S + + + A S + VL+ GE+GTGKEL Sbjct: 240 TELKKYKGEF-REQNKATYTFHHIVGDSDSIIKAKHQAERAANSDSNVLLLGESGTGKEL 298 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A AIH + FV VNC AI LLE+ELFGYEEG+FTG+++GG+ G Sbjct: 299 FAHAIHNAG--------SRAPGSFVKVNCAAIPPDLLESELFGYEEGSFTGAKKGGKKGK 350 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE A GGT+FLDEIGE+PL +Q + LRVL+EKEV RVG P+DVRVI+AT+ NLEE Sbjct: 351 FEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVERVGSTTSKPIDVRVIAATNRNLEEM 410 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + +G FR DLFYRL+++ + +PPLR+R D+ L F++ + + + Sbjct: 411 VDKGEFRLDLFYRLNVVAIHIPPLRDREKDLGQLCLHFIEKLNPIMKKK----VDGISKD 466 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESA--KTP 490 ++ +L Y WPGNIREL N++ER L + P + + ES Sbjct: 467 AQRLLHQYKWPGNIRELENVIERALNMLDNGTVIKSEHLPAKLTDTPSNHSVESLAVSIE 526 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL++ G+++ AA+ LGISR+TF+ +L Sbjct: 527 KAEKTALMNALKQTKGNRSKAASLLGISRSTFYEKLTK 564 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 150/499 (30%), Positives = 228/499 (45%), Gaps = 69/499 (13%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI ++L L+++ +L + Q + + A L + + A Sbjct: 5 VLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDGLTA 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 ++ ELK ++ D A +A G + + A L R L+H Sbjct: 65 LAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPI--ARERLLVALRNVLKHQA 122 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 A LR + DM+G P M+++ I A S VLI GE GTGKEL A+A+H+ Sbjct: 123 AMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQ 182 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 +K PFV +NC A+ L+E+ELFG+E+GAFTG+ R G FE+AH G Sbjct: 183 H--------SKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAV-SVRRGKFELAHEG 233 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+MP +Q +LLRVL+E E+ RVGG + VDVRV++AT+ NLE ++ GRFR Sbjct: 234 TLFLDEIGDMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFR 293 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YR++++++ PPLRER D+ L ++FL + A + V+ Sbjct: 294 EDLYYRINVVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLT----LSPDALAVMSA 349 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTP-----DLTPQFMQLLLPELARE----------- 485 YD+PGN+RELRN++ERLA+ +L P+ + P Sbjct: 350 YDYPGNVRELRNLVERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPE 409 Query: 486 ------------------------------------SAKTPAPRLLTPQQALEKFNGDKT 509 + Q L + + T Sbjct: 410 AAVVLASSTPAPAIAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVT 469 Query: 510 AAANYLGISRTTFWRRLKS 528 AA L + R F++++K+ Sbjct: 470 EAARLLDLERGHFYKKMKA 488 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 144/481 (29%), Positives = 227/481 (47%), Gaps = 50/481 (10%) Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQ-ETIPALVAFQKTFNLRLDQRSYIT 137 + + + I + A + ++ + E + AL + + + ++ Sbjct: 1 MKMNNVWIIDDEESIRTICTSALEDLFNVESFSSASEALLALNSTTPDLIITDIKMPGMS 60 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 + +++E N ++ A D A A G F Y L + Sbjct: 61 GLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATKS 120 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 HD ++ ++G++ M++V + I +++ VLI GE+GTGKEL AQ Sbjct: 121 SKPQHDELTQESNSQ-----IVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQ 175 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 ++H + + PF+A+N AI LLE+ELFG+E+G+FTG+ + R G FE Sbjct: 176 SVHE--------NSSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGA-QSQRIGRFEQ 226 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDEIG+M LQTRLLRVL E RVGG +P+ DVR+I+AT+ N+E ++ Sbjct: 227 ALGGTLFLDEIGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKV 286 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G+FR DL++RL++ R++LPPLR+R DI L + FLK S + L+ + Sbjct: 287 GKFREDLYHRLNVFRIELPPLRKRKEDIPSLVKYFLKKSADE----IKSDLKDIEDPAME 342 Query: 438 VLLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQ----------------------- 473 VL YDWPGNIR+L N + + S T D P Sbjct: 343 VLNEYDWPGNIRQLENTCRYITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGN 402 Query: 474 -------FMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++ +L ++ + + + Q+AL+ G + AA LGI R T R++ Sbjct: 403 WEESLSNHIRSVLQDMNDLTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKI 462 Query: 527 K 527 K Sbjct: 463 K 463 >UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UVC1_RHOBA Length = 498 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 144/452 (31%), Positives = 228/452 (50%), Gaps = 22/452 (4%) Query: 83 VILIKPSGYDVLQAL-AKAGKLTSSIGVVTYQETIPALVAFQK-TFNLRLDQRSYITEED 140 IL + + + + ++ + V T +++ + L ++ + Sbjct: 51 HILFADDEPQLQKLMGTELPRMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMSGIE 110 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRMSLR 198 + E++ ++ + A EA G F Y R A AL ++ Sbjct: 111 VIARAREIRPEIEAVIMTGNPSQETAIEALRHGTFDYLMKPCRLAEISALMGRVSERREW 170 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + A R+ L+ D++G++ M VR+ I A + + VLI GETG GKEL A+A Sbjct: 171 NRLVAALRHRLQRAEGDSDLIGENQSMHAVRKLIAKVAPTESTVLIRGETGCGKELVARA 230 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 I + PFVA+NCGA+ E+L+E+ELFG+ +GAFTG+ GR GLFE+A Sbjct: 231 I--------ADESLRSEQPFVAINCGALPETLIESELFGHVKGAFTGAD-SGRMGLFEVA 281 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GGTLFLDE+GE+PL +Q +LLRVLE ++ R+G +Q + VDVRV+ ATH +LE+ + +G Sbjct: 282 SGGTLFLDEVGELPLAVQAKLLRVLETGDIRRLGDNQSIKVDVRVVCATHRDLEKMVTEG 341 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL +R++ L+LP LR+R+ D+ LAE L+ + + +A+ Sbjct: 342 TFREDLMFRINTFELRLPALRDRIDDLPALAEHLLRRH-----RADGTSGQLFTEAAMAE 396 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQF---MQLLLPELARESAKTPAPRL 494 L + WPGN+REL N++E ++ P + PQ QL L Sbjct: 397 LQSHQWPGNVRELANVIEHASVLCDALPIDVEHLPQHFARRQLRADLADTAPMTMREIEL 456 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ++A+ + NG+K A A LG+S T + +L Sbjct: 457 RAIERAMTRHNGNKKAVAEELGMSLKTLYNKL 488 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 137/452 (30%), Positives = 210/452 (46%), Gaps = 21/452 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + L + L + Q + L L + + + Sbjct: 62 ILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVEL 121 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 I E + ++ A +A G F Y + + Sbjct: 122 AKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAALA 181 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 L ++ L +++G+S + Q + A + +L+ GETGTGKE+ AQAI Sbjct: 182 RRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQAI 241 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+E +++ FVA+NC A + LLE+E+FG++ GAFTG+ + R GLFE AH Sbjct: 242 HQE--------STRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKD-RKGLFEEAH 292 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDE+GEM L LQ +LLRV+E E +VG +P V+VR+I+AT+ +L + G Sbjct: 293 NGTIFLDELGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGH 352 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYR+S+ ++ LP LR+R DI LA+ F+ ++ + T L Sbjct: 353 FREDLFYRISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGF----ITAL 408 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTP---QFMQLLLPELARESAKTPAPRLL 495 H+ W GNIREL+N++ER + S PD P QF + + + L Sbjct: 409 QHHAWKGNIRELKNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAFSLQSVEKL 468 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q+ L G+K AA L I T +R+++ Sbjct: 469 HIQKVLNHTQGNKAEAARLLEIGIATLYRKIE 500 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 146/455 (32%), Positives = 223/455 (49%), Gaps = 36/455 (7%) Query: 86 IKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA---- 141 I +G+D + V+T + L+ + + I E + Sbjct: 152 IIDTGHD------GYLVVNKEGYVITLNKAYAELIDINPEDAIGRHIKEVIPETELHLVS 205 Query: 142 ---RGQINELKA-NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 + QI E+ G EAVV I G ++ V Q + A + Sbjct: 206 QTGKTQIGEVLRVKGREAVVMRYPINKDGRIIGAVSKVMFRD--VNQFITSAKTVYSSQR 263 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 R RY + +++G+S M ++++T+ A + VLI GE+GTGKEL A Sbjct: 264 RI--KGEPEQWASARYTVDNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAH 321 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 ++H + PFV VNC A+ E+LLE+ELFGY EGAFTG+++GG+ G FE Sbjct: 322 SLH--------VGSNRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQ 373 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+GGT+FLDEIG+MPL +Q +LLRVL+EKE+ R+G ++ V+VRV++AT+ LE+ + Sbjct: 374 ANGGTIFLDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIAD 433 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YRL+++ LQ+P LRER+ D+ L E FL A + + Sbjct: 434 NTFREDLYYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFG----LNITGLSADALE 489 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPEL-----ARESAKTPA 491 + +Y+WPGN+REL N++ER + P ++Q + Sbjct: 490 LFENYNWPGNVRELENVVERAFNLVDGHIIDVMHLPPYLQKFGKSKRHSINKSLPSLLEQ 549 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 AL NG+K AA LGISR ++++ Sbjct: 550 VEKEAIADALSVTNGNKMQAAKILGISRAWLYKKI 584 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 210/469 (44%), Gaps = 37/469 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + + L + + L + + + Sbjct: 4 ILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLEL 63 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR-QAFSDALDMTRMSLRHN 200 + E+K +V A D A A +G + Y + D + S + Sbjct: 64 LVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQPL 123 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + + ++G SP+M ++ I A + A VLI+GE+GTGKEL A+AIH Sbjct: 124 PAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAIH 183 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 R H FV + C AI ESL E+E+FG+ +GAFTG+ RAGLFE A+ Sbjct: 184 R--------LSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAA-SSRAGLFEQANQ 234 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT FLDEIGE+ +QT+LLRVL+E+E+ RVG + + +RVISAT+ +LEE++ GRF Sbjct: 235 GTAFLDEIGELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRF 294 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DLFYRL+++ +++PPLRER D+ L + FL + + + + VLL Sbjct: 295 REDLFYRLAVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKD----IHRISSYAMEVLL 350 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPT---PDLTPQFMQLLLPELA-------------- 483 YD+PGN+REL N++ER + + + PE A Sbjct: 351 DYDFPGNVRELENIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEE 410 Query: 484 ----RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ALEK KT AA L S + ++K Sbjct: 411 VFSRGLEPTLADLEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKK 459 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 155/460 (33%), Positives = 216/460 (46%), Gaps = 27/460 (5%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQR-----S 134 P +L+ DVL+AL K V + + L A L S Sbjct: 23 PCVLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYARDTTS 82 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 D G+I A+ V+ A + A EA G Y A T+ Sbjct: 83 GQEGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLATLRTQ 142 Query: 195 MSLRHNTHDATRNALRTRYVLGD------MLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 + LR + R +++ M+ +S M+ VR+ I A S A VL+ GE Sbjct: 143 LELRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEH 202 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKE+ A+ IH + FVAVN G ++E + E+ELFG+ +GAFT + + Sbjct: 203 GTGKEVVARLIH--------GGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDA-K 253 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 R G FE+A GGTLFLDEIG MPL Q +LLRVL+ E+ VG + VDVRV+SAT+ Sbjct: 254 SDRIGCFELADGGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATN 313 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 +L + +GRFR DL YRL+ + +QLPPLRER DI LA FL P Sbjct: 314 VDLSRAVAEGRFREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNV--- 370 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR-ESA 487 + + LL Y WPGN+REL + +ER L S + + +AR E Sbjct: 371 -RLSSEALEALLAYAWPGNVRELEHAVERAMLMASGDEVTQEDLLLKRAGREGMARLEEM 429 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++AL + G+ + AA LG+SR+ +RRL+ Sbjct: 430 TLEEVERYLIERALARHEGNVSEAAKGLGLSRSALYRRLQ 469 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 140/467 (29%), Positives = 217/467 (46%), Gaps = 37/467 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + +L + T +E + + + Sbjct: 5 VLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDGLEV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 + A+ ++ + A A G + + + + A Sbjct: 65 LDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYYRLR 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + A R+ L + M G S + ++R I A + A VLI GE GTGKE+AA++I Sbjct: 125 RENQALRSRLTQSTTVE-MTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAARSI 183 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A +K P VAVNC AI E L+E+ELFG+E+GAFTG+ + G FE+AH Sbjct: 184 H--------ASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGA-ETAKTGKFEMAH 234 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEI +M L Q ++LR+L+E+ RVGGH+ V VDVRVI+AT+ +LE+++ GR Sbjct: 235 QGTLFLDEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGR 294 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL ++ L +PPLR+R D++ L F+ A + + L Sbjct: 295 FREDLYYRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVT----FAPDACSAL 350 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPD--LTPQFMQLLLPELARE------------ 485 L Y WPGN+REL+N +ER+ + S + L P++ + + Sbjct: 351 LCYHWPGNVRELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPE 410 Query: 486 -----SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 A A + L++F G+ T A +G+ R+ +R+LK Sbjct: 411 GVMDFKAARTAFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLK 457 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 135/448 (30%), Positives = 207/448 (46%), Gaps = 18/448 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ D + L + + G +E L + L + Sbjct: 3 VLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGMEL 62 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 I E A V+ A EA G + + + + R Sbjct: 63 LKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRGIK 122 Query: 202 HDAT--RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + R G + +S M++V + + A S VLI GE+G GKE+ A I Sbjct: 123 RENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIASII 182 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR + P VA+N +I + L+EAELFGYE+GAFTG+ G+ G FE+A Sbjct: 183 HR--------NSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGAD-SGKEGFFELAD 233 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G TLFLDEIGEM + LQ +LLR +E + R+GG + + +VR+I+AT+ +L E +++G Sbjct: 234 GSTLFLDEIGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGE 293 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ + +PPLRER DILPLA FL + S ++ +E L Sbjct: 294 FREDLYYRLNVVEINIPPLRERREDILPLAYHFLDLFNRKYSK----NIKGFTARAENSL 349 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQ 499 Y W GN+REL+N++ER LF + + E + + Sbjct: 350 TSYPWYGNVRELKNIVERAVLFSDGDRIDSEDISCL-FTHQESKKSFKTIKDVEREYITE 408 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLK 527 L++ N +K A+ LGI T +R+L+ Sbjct: 409 ILKQVNFNKRKASEILGIPLRTLYRKLE 436 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 214/468 (45%), Gaps = 32/468 (6%) Query: 79 LSVPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSY- 135 ++ IL+ + L A + +E + + + + Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMT 193 I + + E+ N + ++ A D A EA G F Y + + M Sbjct: 61 IDGLELLQRAKEM-NNASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 + ++ + L + ++G S ++++V I A SSA VLI GE+GTGKE Sbjct: 120 EQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKE 179 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+AIH +K FV +NC ++E LLE+ELFG+ GAFTG+ + + G Sbjct: 180 LVARAIH--------FNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKD-KKG 230 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 LFE A GGTLF+DEIG++P P+Q ++LRVL+E E +G VDVR+I+AT+ +L + Sbjct: 231 LFEEADGGTLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLK 290 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 ++ FR DL+YRL+++ +++PPLRER DI L + F++ + ++ Sbjct: 291 KVRDKEFREDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQ----IKGLSP 346 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDL-TPQFMQLLLPELARESAKTPAP 492 +E L Y WPGN+REL N +ER + P ++ P Sbjct: 347 ETEMELYKYHWPGNVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHP 406 Query: 493 RLLTPQQALEKFN------------GDKTAAANYLGISRTTFWRRLKS 528 ++AL+ FN G+ T AA I R R LK Sbjct: 407 YKEARKKALDVFNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKK 454 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 217/469 (46%), Gaps = 39/469 (8%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEED 140 IL+ + + L + + L + L + ++ D Sbjct: 7 NILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLGDMSGID 66 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLR 198 + + ++ A T++A A G + + + + + + Sbjct: 67 VLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRSLSLRTV 126 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 A N+L ++G P+M+ + + A++ +LI GE+GTGKEL A+A Sbjct: 127 EQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIARA 186 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + + +HPFV VNCG I E+L+E+ELFG+ +G+FTG+ + GLF IA Sbjct: 187 IHEQ--------SDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMD-KKGLFTIA 237 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 H GT+FLDEIGE+ +PLQ +LLRV+++ +VGG + + VD R++SAT+ NL +++ G Sbjct: 238 HKGTIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDG 297 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLFYRL+++ L +PPLRER +DI LA+ F++ L + + Sbjct: 298 NFREDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIK----LSSYALDM 353 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELA--------------- 483 L Y +PGN+REL N++ER + P+ + L + + Sbjct: 354 LEKYSFPGNVRELENLIERSVALSTTNII---LPESLSLAVHKRRWIEGVPGRRFDLEEV 410 Query: 484 ----RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ALE G+K AA LGIS +F RL Sbjct: 411 TKGVALDEILADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDK 459 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 509 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 155/475 (32%), Positives = 221/475 (46%), Gaps = 44/475 (9%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYIT 137 + I + L KA + + V E AL + + + Sbjct: 3 QAQHLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMPGTD 62 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 QI + + ++ A D A A G F Y A + + M+ Sbjct: 63 GLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKAMAH 122 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 R + + D++G+S M+ V + I + SS +VLI GETGTGKE A+ Sbjct: 123 RSKPEVR----VSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVAR 178 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 A+H+ + PF+A+N AI L+E+ELFG+E GAFTG+ + R G F Sbjct: 179 ALHKH--------SPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKK-RDGRFLQ 229 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDEIG+MPL +QTRLLRVL E + VG HQPV V+VRVI+ATH +L+E + Sbjct: 230 ADGGTLFLDEIGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVAN 289 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL++RL++++L+LP LRER DI LA FLK S L + +Q A+ Sbjct: 290 NEFREDLYHRLNVIQLRLPALRERKQDIPLLARYFLKQSAIEL----EVSEKQLSDAALA 345 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAK-------- 488 L Y WPGN+R+L N+ L + + PD P + +L + Sbjct: 346 QLEAYGWPGNVRQLENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLA 405 Query: 489 ----------------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + ALEK +G K AA++LG R T R+LK Sbjct: 406 HELRTQTHNYDNMTPIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 509 bits (1312), Expect = e-143, Method: Composition-based stats. Identities = 131/402 (32%), Positives = 215/402 (53%), Gaps = 25/402 (6%) Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 +++ RG ++ G ++ + + D + G G+ + T + L+ Sbjct: 189 MHEKKEVRGLYHQPC-EGAHVLINSAPVFDSGKVIG--GLAVEKDITEIVQLNQELNKAS 245 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 ++ + R ++G+S ++++ + + A VL+ GE+GTGKEL Sbjct: 246 TQVKLLEQE-IRKISGQDCAFNKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKEL 304 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH+ + +PF+ VNCGAI +L E+ELFGYE GAFTG+ R G+ G+ Sbjct: 305 LARAIHQ--------NSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTGADRKGKPGM 356 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A+GGTLFLDE+GEMP+ +Q +LLRVL+E RVGG Q V V+VRV++ATH NLE+ Sbjct: 357 FELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDM 416 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + + +FR DL+YRL+++ L++PPLR+R DI L F++ +++ A Sbjct: 417 INRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDK----NIKKIEPA 472 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQL--------LLPELARE 485 T L Y WPGN+REL+N +ERL + + + P+ ++ + Sbjct: 473 VMTAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRNTYISLVTSPVSQGKL 532 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L++ G+++ AA LGI R+T + +L+ Sbjct: 533 MNVAVEAEKQLILKTLQQVRGNRSEAARVLGIPRSTLYYKLR 574 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 139/462 (30%), Positives = 229/462 (49%), Gaps = 31/462 (6%) Query: 84 ILIKPSGYDVLQALAKAGK--LTSSIGVVT-YQETIPALVAFQKTFNLRLDQRSYITEED 140 +LI D+LQ L ++ + L + V + E + L L + + + Sbjct: 6 LLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPEMNGLE 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ--AFSDALDMTRMSLR 198 Q+ T ++ A +LA +A G + + S Sbjct: 66 LLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKALERSRL 125 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + ++ +++G+S +M++V + I + A++ VLI GE+GTGK+LA +A Sbjct: 126 LRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGKDLACRA 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH A ++S+PFVAVNC AI E++LE+ELFGY +GAFT + + R GLF+ A Sbjct: 186 IH--------ALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQN-RTGLFQEA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 H GT+FLDEIG++ +Q +LLRVL+EK + +G + V VDVRV+++T+ +L + +++G Sbjct: 237 HKGTIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLFYRL++L + +P LRER DI L ++ AAL+ P + + + + Sbjct: 297 EFREDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTE----I 352 Query: 439 LLHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTP 497 L WPGN+REL N++ R LF E P+ + +++ T P Sbjct: 353 FLRAPWPGNVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAK 412 Query: 498 QQALE------------KFNGDKTAAANYLGISRTTFWRRLK 527 ++AL G+ + AA G+ R + L+ Sbjct: 413 EEALRGFHAEYFGGVLTATRGNVSHAAKLCGLERQALQQLLR 454 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 136/447 (30%), Positives = 208/447 (46%), Gaps = 18/447 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVT--YQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL L+ L + + + E + L + + + T D Sbjct: 7 ILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMPQATGLDL 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + E + ++ A EA G Y + + Sbjct: 67 IRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTS--EELQGAMDRIVERVH 124 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 A+ ++G SP M+ V + I A ++A VLI G++GTGKEL A+A+H Sbjct: 125 RRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVARAVHY 184 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 +++ PFV VNC AI +SL+E+ELFG+ +GAFTG+ + RAG FEIA+GG Sbjct: 185 H--------SDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGA-KEARAGFFEIANGG 235 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 T+FLDEIG+ +Q +LLR+L+ KE +VG VD R+++ATH +L+ ++ G FR Sbjct: 236 TVFLDEIGDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFR 295 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL ++ + +P L ER DIL L +FL + T L + Sbjct: 296 EDLYYRLHVVDIPVPSLAERGDDILILISNFLVKFS----KTMQCPTPSITDEALTALRN 351 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQA 500 Y WPGN+REL N+++R+ + + +P P M+ LP R + Sbjct: 352 YSWPGNVRELENLIQRMVVIVDHDPIEVTDLPPNMRFSLPMEERVDRSLAEVEQEHIKNV 411 Query: 501 LEKFNGDKTAAANYLGISRTTFWRRLK 527 L + +KT AA LGI+R T +LK Sbjct: 412 LIMTDNNKTRAAEILGINRKTLREKLK 438 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 144/457 (31%), Positives = 221/457 (48%), Gaps = 26/457 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + +A A + V + + + + D Sbjct: 8 LLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMPQMGGMDL 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 ++ L+ T ++ A + A EA G + A Q ++ L Sbjct: 68 LKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNVCSTRLLR 127 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + L R+ +M+G+S M +V I L A S A+VL+ GE+GTGKE+ A A+ Sbjct: 128 EQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGKEMVAAAV 187 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H +++ +V V+C ++ ESL+E+ELFGYE GAFTG+ R G FE A Sbjct: 188 HY--------NSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANER-RIGRFEAAS 238 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+PL Q +LLR L+E+++ R+G ++PV V+VR++SA+ LE+++ GR Sbjct: 239 GGTLFLDEIGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGR 298 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLF+R++ + + LPPLR+R+ D+ LA SFL+ + V Sbjct: 299 FREDLFFRINTVAICLPPLRKRLEDVPILAASFLQEFAEE----RKLEIEGFSDEVLEVF 354 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARES--------AKTP 490 + W GN+RELRN++ER LF D P M+ E A E Sbjct: 355 DAHPWTGNVRELRNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVMTMHEAVE 414 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + AL G + AA+ LG+SR T W ++K Sbjct: 415 KAEVRAIRAALASTGGRRADAADLLGVSRKTLWEKIK 451 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 142/467 (30%), Positives = 210/467 (44%), Gaps = 38/467 (8%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV-TYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 ILI ++ +A+A+ +L ++ E I L L + Sbjct: 7 ILIVDDEHNTREAMARYLRLRFNVATAADGGEAIELLKHEDFDLVLTDLRMPKADGMSVL 66 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL---------DMT 193 ++ A A A G F + A V+ +A+ Sbjct: 67 EATASKANRPACILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVIDAALAARRKAA 126 Query: 194 RMSLRHNTHDATRNALRTRYVLGDML--GQSPQ--MEQVRQTILLYARSSAAVLIEGETG 249 A ++ P M +V + A + + VL+ GE+G Sbjct: 127 EDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVAPTRSTVLLTGESG 186 Query: 250 TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRG 309 TGKE+ A+ IH ++ FV V+C A+ +LLE+ELFGYE+GAFTG+ Sbjct: 187 TGKEVFARMIHDWSG---------RTGYFVPVHCAALTATLLESELFGYEKGAFTGAAER 237 Query: 310 GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 369 + G FE+A GTLFLDEIGE+ Q +LLRVLE + RVGG + + VDVR+++AT+ Sbjct: 238 HK-GRFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLVAATNR 296 Query: 370 NLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALR 429 +L + + +G FR DLFYRLS++ L+LPPLR+R +DI L SF+ + Sbjct: 297 DLRKMVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDVT---- 352 Query: 430 QGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESA 487 + L+ Y WPGNIRELRN +E + + + D+ P +A Sbjct: 353 GIAPDALAELVAYPWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRNHENPVPPGSAA 412 Query: 488 KTPAP--------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 P P ++AL + NG++T AA LGISR T RRL Sbjct: 413 TAPEPEIETFENSERKLIEKALAECNGNRTQAAKLLGISRRTLHRRL 459 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 157/546 (28%), Positives = 264/546 (48%), Gaps = 38/546 (6%) Query: 7 LNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAII 66 I + L E + I D I+ E + + E+ D+I+ Sbjct: 88 AKKYGKNIVVLGFKSLVEEVQQIGPILDINLKAYHIEHEEEGESYIKKIIASGEKIDSIL 147 Query: 67 AAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTS---------SIGVVTYQETIP 117 G+ + S+ + + ++ + +++ +A ++ Sbjct: 148 -GGTVAENIASKFGIHTVHLETGEAAIEKSIKEAVRILEVSRKEKEKAEQFKAILNHINQ 206 Query: 118 ALVAFQKTFNLR-----LDQRSYITEEDARGQI---NELKANGTEAVVGAGLITDLAEEA 169 +++ K + ++ + I E+D G+ + V I Sbjct: 207 GVISINKEGKVTTFNPGAEKITGIIEKDILGKDIINFMSNTKLIDVVKTGMPILSQLHNI 266 Query: 170 GMTGIFIY-SAATVRQAFSDALDMTRMSLRHNTHDA------TRNALRTRYVLGDMLGQS 222 G T I V A+ + + ++ +Y L D++G+S Sbjct: 267 GKTEILTNDIPIIVDDKVVGAVSTFEAAAKIQEYEQKIRSNLRDKGYIAKYNLSDIIGES 326 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 ++ +++ L YA + + VLI GE+GTGKE+ AQ IH +K+ PFVA+N Sbjct: 327 EIIQNIKKKSLKYAVTDSTVLIVGESGTGKEMFAQGIH--------LSSKRKNGPFVALN 378 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 CGAI +L+E+ELFGYEEGAFTG+ R G+ GLF AHGGT+FLDEIGE+P+ Q RLLRV Sbjct: 379 CGAIPGNLIESELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGELPIEFQARLLRV 438 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 ++E+EV +G ++ +P+DVR+I+A + +L +++++G FR DL+YRL+IL +++P L ER Sbjct: 439 IQEREVRPLGSNKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNILSMRVPTLMERR 498 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 DI + + FLK+ + + + + + + +L Y+WPGNIREL N+ ERL + Sbjct: 499 EDIGIIFKHFLKLMCSRFNK-----VVKISEKAINILKEYNWPGNIRELENITERLVVLA 553 Query: 463 SVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 E T +L + + + + + + + L + G++T AA LGISRT Sbjct: 554 EDEITDELVKEELGDFIHYKDEKVSSLEYLKQNQILKVLSECKGNQTLAAQKLGISRTHL 613 Query: 523 WRRLKS 528 WR LK Sbjct: 614 WRLLKK 619 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 83/212 (39%), Gaps = 15/212 (7%) Query: 11 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGS 70 KP++ + + ++ + ++ ++ +QLG + KK + + +I+ G Sbjct: 2 KPILIVAPNSDILKISKRVAKKYKE----VSVQLGLIDKAVEVAKKAEHMGVEVLISRGI 57 Query: 71 NGAYLKSRL-SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLR 129 LK + SV ++ + S YD+ +A A K +I V+ ++ + + ++ Sbjct: 58 TAKILKEEVPSVALVEMIVSSYDIFSTIALAKKYGKNIVVLGFKSLVEEVQQIGPILDIN 117 Query: 130 LDQRSYITEEDARGQINELKANGTEA--VVGAGLITDLAEEAGMTGIFIYSAATVRQAFS 187 L EE+ I ++ A+G + ++G + ++A + G+ TV Sbjct: 118 LKAYHIEHEEEGESYIKKIIASGEKIDSILGGTVAENIASKFGIH--------TVHLETG 169 Query: 188 DALDMTRMSLRHNTHDATRNALRTRYVLGDML 219 +A + + +R +L Sbjct: 170 EAAIEKSIKEAVRILEVSRKEKEKAEQFKAIL 201 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 140/450 (31%), Positives = 222/450 (49%), Gaps = 21/450 (4%) Query: 83 VILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 ILI L + V + E + + + L + + Sbjct: 6 NILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMNGIE 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 I E++ + V+ D A A G Y A + A + + Sbjct: 66 LLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALERQAL 125 Query: 201 THDATRNALRTRYVLGD--MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + + R D ++GQS Q+ ++++TI A VLI+GETGTGKEL A+ Sbjct: 126 SVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELIARG 185 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + F+A+NCG L++ ELFG+E AFTG++RG + G+ E+A Sbjct: 186 IH--------MLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQK-GILEVA 236 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 +GGT+F DE+ E+PL +Q +LLRVL+E+ RVGG Q +PVD+RV+SAT+C+L+E+++ G Sbjct: 237 NGGTVFFDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNG 296 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR+DLFYRL+++ L PPLR+ DI L FL+ + ++ Q + + Sbjct: 297 TFRQDLFYRLNVVTLSAPPLRDHREDIPVLIGHFLEKH-----RTETQSIDTISQETLDI 351 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEP-TPDLTPQFMQLLLPELARESAKTPAPRLLTP 497 L++Y +PGN+REL N+ +R +PDL P+ ++ + Sbjct: 352 LMNYSFPGNVRELENISQRALALARGTVFSPDLLPEEIRNIDRNKPLR--TLEEVERDHI 409 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ + NG+KT AA LGI R + WR++K Sbjct: 410 EKVMLATNGNKTQAAKILGIDRVSLWRKMK 439 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 150/461 (32%), Positives = 218/461 (47%), Gaps = 21/461 (4%) Query: 70 SNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFN 127 N + +L+ + L++A L + + +E L A + Sbjct: 1 MNPESAPASAPQQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLV 60 Query: 128 LRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQA 185 + + + G ++ A A +A G + Q Sbjct: 61 ILDIALPGKAGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQI 120 Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVL-GDMLGQSPQMEQVRQTILLYARSSAAVLI 244 + T + + R + M+G SP + Q+RQ + A + + VLI Sbjct: 121 LNSIHRSTERARLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLI 180 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 +GE+G GKE+ A+A+H+ + PFVAVNC AI+ L+E+ELFG+ +GAFT Sbjct: 181 QGESGVGKEVVARALHQ--------LSPRAEQPFVAVNCAAISAELIESELFGHVKGAFT 232 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 G+ R R GLF AHGGTLFLDEIGE+PL LQ+RLLRVLEE++V VG Q VPVDVRV+ Sbjct: 233 GA-REARNGLFHYAHGGTLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVL 291 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 +AT+ +L ++ RFR DLFYRL ++ L +PPLRER D+ LA +F++ L P Sbjct: 292 AATNRDLRAEVAACRFREDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPP 351 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR 484 L+ + WPGN+RELRN +ER LF P + P + Sbjct: 352 LL----ISPEVSARLMAHPWPGNVRELRNFVERSLLF---GDFPLASLAGAVAPPPPASA 404 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 L++ G+KT AA LG+SR T R+ Sbjct: 405 APLLLEEVEKRHILAVLDQCGGNKTRAAELLGVSRKTLERK 445 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 148/477 (31%), Positives = 238/477 (49%), Gaps = 45/477 (9%) Query: 74 YLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQR 133 + L V+ +K + +L+A + + + + A A F L+L Sbjct: 113 NIADELE-NVLALKQTLETILEAGQE-----GYMVLDLDKTVTHANKAIADLFGLKLSDI 166 Query: 134 SYI----------------TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIY 177 + +D + ++ E+ NG + V I + G I+ Sbjct: 167 VNKPINSLTANPFFCELPESADDIKTEVVEI--NGRQVVAFKYPIVKDYKLYGGVIKVIF 224 Query: 178 SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYAR 237 + A ++ ++ L + ++ T+ + ++ ++G P + ++++ I A Sbjct: 225 QEVSDLLALAEKVNQLNSELSYYKNELTKYTSK-QFTENKIIGNHPSIVRLKEIIKKIAP 283 Query: 238 SSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFG 297 + VLI GE+GTGKEL A A+H E + F+ VNC AI E+L EAELFG Sbjct: 284 YNTTVLIRGESGTGKELVAHALHVESG---------RPGSFIKVNCAAIPENLFEAELFG 334 Query: 298 YEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV 357 Y EGAFTG+++GG+ G FE+A+ GT+FLDEIG+MPL +Q +LLRVL+EKEV R+G + Sbjct: 335 YVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTR 394 Query: 358 PVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL 417 ++VRVI+AT+ NLEE +++ +FR DL+YRL+++ L +P LRER+ D+ L + F++ Sbjct: 395 KINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFN 454 Query: 418 AALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD--LTP--- 472 + + ++Y WPGNIREL N++ER + + L P Sbjct: 455 KEYG----TNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGKVIEKKYLPPYIL 510 Query: 473 --QFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + P + A + AL K G+K+ AAN LGISR +RLK Sbjct: 511 GEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQWLHKRLK 567 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 156/449 (34%), Positives = 228/449 (50%), Gaps = 38/449 (8%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG 143 ILI +++A + KL + ++ + L + Sbjct: 224 ILIIDRDGKIVKANNQLKKLFRIPQLQLEEKKLDDLFNDPSIC----SNHPLHLQNQELH 279 Query: 144 QINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHD 203 + +V I + E G I VRQ + Sbjct: 280 LSVKPSNAVHHVLVDKIPIYEKKERIGSMIIVKEIEK-VRQFVNHL-------------- 324 Query: 204 ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREY 263 + + + DM+GQ P + L A + + VLI GE+GTGKE+ AQAIH E Sbjct: 325 ---SGNQAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEMVAQAIHNE- 380 Query: 264 FARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTL 323 +++ PF+A+NCG I LL +ELFGY +GAFTG+++GG AG FE+A+GGTL Sbjct: 381 -------SKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTL 433 Query: 324 FLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRD 383 FLDEIGEM L +Q LLRV++EKEV R+GGH+ +PVDVR+I+AT+ +L ++Q+G FR D Sbjct: 434 FLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFRED 493 Query: 384 LFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYD 443 LF+RL+++ + LPPLRER DI L F++ PF + L+ YD Sbjct: 494 LFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPF----PEIRSDFLEALMQYD 549 Query: 444 WPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPR--LLTPQQ 499 WPGNIREL+NM+ER+ + DL + Q RE+ + + Sbjct: 550 WPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFQPSCSSQVRENVDISRNEIKKQSIIE 609 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 AL++ NG+ + AA YLGISR+TF+R++ Sbjct: 610 ALKQCNGNISKAARYLGISRSTFYRQMDK 638 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 141/454 (31%), Positives = 218/454 (48%), Gaps = 34/454 (7%) Query: 89 SGYDVLQALAKAGKLTSSIGVVTYQETIPALV---AFQKTFNLRLDQRSYITEEDARGQI 145 G ++ L + + + +TI + F+ + ++ + TEE+ R + Sbjct: 292 DGPEIDSELTYIERRQYLLELSKGNKTILSKKPAGTFRVRYTVKARKLPLPTEEEIREIL 351 Query: 146 NELKANGTEAVVG----AGLITDLAEEAGMTG-IFIYSAATVRQAFSDALDMTRMSLRHN 200 E + A G I + + Sbjct: 352 AYTDKFTPEDELNCGACGYNSCREKAIAVYQGLAEIDMCLPFLLKKTRGEAEFYRNKYEM 411 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + R +Y L + GQ+ ++ +V++ I A S VLI+GE+G GKE+AA+ IH Sbjct: 412 EN-------RKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIH 464 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + PFVA+NC AI E+LLE+ELFGYEEGAFTG++RGG+AG E A G Sbjct: 465 Y--------LSERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADG 516 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIG+MPL +Q +LLR ++ +E R+G + P VD+R+I+AT+ L + +++GRF Sbjct: 517 GTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRF 576 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YRL++ + +PPLRER DI L F+ A + + +L+ Sbjct: 577 RMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCER----RKMAPKIVTSEAMNILM 632 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARES------AKTPAPR 493 +Y WPGNIREL+N++ER P+ P + R + Sbjct: 633 NYSWPGNIRELQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVE 692 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L+ N +K A A LGI R T ++++K Sbjct: 693 KKLIIEGLKATNYNKLACAKLLGIPRATLYQKIK 726 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 129/422 (30%), Positives = 207/422 (49%), Gaps = 20/422 (4%) Query: 113 QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMT 172 Q+ + A + + ++ D +I ++ ++ ++ D A EA Sbjct: 38 QQALTAFIEQGADLIITDLAMPGLSGMDLLSRIRDVDSDVPVIIITGYSSVDNAIEALRL 97 Query: 173 GIFIYSAAT--VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 G + + + + L+ + M+G ME V + Sbjct: 98 GATDFIKKPYDTDELLLLIERTLEGERLKRENRLLKRQLKDERLRYGMVGHGDAMESVYR 157 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 I A V+IEGE+GTGKEL A+AIH + PFV ++CGAI ++L Sbjct: 158 LIDKVADIRCNVIIEGESGTGKELVARAIHTQGPD--------ADKPFVVIDCGAINDTL 209 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 LE+ELFG+E+GAFTG+ +AGL E A GGT+FLDEI + +Q +LLRV++E++V R Sbjct: 210 LESELFGHEKGAFTGAAHT-KAGLLETATGGTVFLDEICNISDAMQVKLLRVVQEQQVMR 268 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 VG +P+P+DVR I+AT+ NLE ++ G FR DL++RL+++++ +PPLR R DI PL + Sbjct: 269 VGSVRPIPIDVRFIAATNRNLEAMIEAGEFRHDLYHRLNVVQIHMPPLRARREDIPPLVQ 328 Query: 411 SFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDL 470 +F++ + + L YDWPGN+RELRN++ER Sbjct: 329 AFVEEFAKRYHRQ----VEGFDPHALERLQTYDWPGNVRELRNLVERTIALADGPVLHLD 384 Query: 471 -----TPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 T L + + L++ +G++ A LGI+++T WR+ Sbjct: 385 RQWPSTGAASTAAAQALDADQPDLATLERRYILKTLQRLDGNREQTARALGINKSTLWRK 444 Query: 526 LK 527 L+ Sbjct: 445 LQ 446 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 136/459 (29%), Positives = 217/459 (47%), Gaps = 22/459 (4%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSI-GVVTYQETIPALVAFQKTFNLRLDQRSY 135 + P +++ Q + + + + + + +PA+ + + Sbjct: 2 ASAKKPSLMVIDDLDSARQMMKRTLARSYDVYDFASVADAVPAVERADFDCIVTDLRMPG 61 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMT 193 I + + +V A + A EA G F Y + + Sbjct: 62 IDGIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAV 121 Query: 194 RMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKE 253 + + R+AL ++ + ++G+S M+ + + A S +LIEGE+GTGK+ Sbjct: 122 EHARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKD 181 Query: 254 LAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAG 313 L A+A H A + P+VA+N AI E+L E+ELFG+E+GAFTG+ + RAG Sbjct: 182 LLARAAH--------ALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQ-PRAG 232 Query: 314 LFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEE 373 F A GGTLFLDE+G +P LQ +LLRVL++ E VG +P +VRV++AT+ +L+ Sbjct: 233 FFAEAEGGTLFLDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQR 292 Query: 374 DMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQ 433 +++G+FR DL++RL ++ L+LPPLRER DI L E ++ LS P Sbjct: 293 RVKEGKFREDLWFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQP----DA 348 Query: 434 ASETVLLHYDWPGNIRELRNMMERLALFLSVEPT------PDLTPQFMQLLLPELARESA 487 + LL + WPGNIREL + +ER L + P+LTP + R Sbjct: 349 EAMRALLDHPWPGNIRELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRR 408 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 A + L + G AA G+ R+TF+ +L Sbjct: 409 ARDAWERRFLEDVLREAGGQVARAAELSGLHRSTFYEKL 447 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 506 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 134/415 (32%), Positives = 218/415 (52%), Gaps = 33/415 (7%) Query: 131 DQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL 190 + T + G+I ++K G E V I + E G+ G ++ +A ++ L Sbjct: 177 MHKVLETGKPEIGEIQKIK--GCEMVATRVPIYEEGEIVGVLGKVLFRDIKEVKALAERL 234 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT 250 D L + + R ++Y +++G S ++ + ++ + ++S + VLI GE+GT Sbjct: 235 DAATNELDYYKGE-VRKLKGSKYNFENIVGSSKKIIEAKEMAKIASQSDSTVLIRGESGT 293 Query: 251 GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGG 310 GKEL A AIH ++ F+ VNC AI E+LLEAELFGYE+GAFTG+ + G Sbjct: 294 GKELFAHAIHDG--------SLRRYGAFIRVNCAAIPENLLEAELFGYEKGAFTGANKEG 345 Query: 311 RAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCN 370 + G FE+A+GGT+FLDEIG+MP +Q +LLR L+E+EV R+G + + +DVR+I++T+ N Sbjct: 346 KPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRIIASTNRN 405 Query: 371 LEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQ 430 LE+ + Q +FR DL+YRL++ + +PPLRE D+ L +K + + Sbjct: 406 LEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEMG----LNVNG 461 Query: 431 GLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAK- 488 + +L Y WPGNIREL+N++ER D PQ++ +++ Sbjct: 462 VSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEEQQNNSN 521 Query: 489 ----------------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + AL++ N +K AA L I R+ +++L+ Sbjct: 522 SKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSGLYKKLE 576 >UniRef50_C4KCC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4KCC3_THASP Length = 501 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 140/499 (28%), Positives = 217/499 (43%), Gaps = 41/499 (8%) Query: 52 YIRKKLANERCDAIIAAGSNGAYLKS--------------------RLSVPVILIKPSGY 91 + K++ D +A G G K+ + +L+ Sbjct: 1 MVAKRIGGGGDDVQMARGVRGDEAKALAQGGVGRAEPARPVELADYQWPAHSVLVVDDEE 60 Query: 92 DVLQALAK--AGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELK 149 + L + A + + + + + + ++ E Sbjct: 61 GMRNFLERTLARRCGMVQSAADAEHAAVLMARLHFDLLVLDIALPGKSGIEWLHELRENG 120 Query: 150 ANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRHNTHDATRN 207 G ++ A + A +A G + Q + + + R Sbjct: 121 YAGDVILITAFADMETAIDALRGGASDFILKPFRVDQILNSIKRCFERAGLARENFVLRR 180 Query: 208 ALRT-RYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 L ++G SP MEQ+R + + + VL+ GE+GTGKE+ A+A+H+ Sbjct: 181 ELAGLGAEPTGLIGHSPAMEQLRALVRRVGQMPSTVLLLGESGTGKEVVARALHQT---- 236 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 + PFV +NC AIA L+E+ELFG+ +GAFTG+ R GLF AHGGTLFLD Sbjct: 237 ----SPRAQRPFVPLNCAAIASELIESELFGHVKGAFTGATEN-RNGLFYYAHGGTLFLD 291 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EI E+PL +QTRLLRVLEE+++ VG + +PVDVR+I+A++ +L +++ GRFR DL+Y Sbjct: 292 EISELPLAMQTRLLRVLEERKLRPVGSERELPVDVRIIAASNRDLAAEVRAGRFREDLYY 351 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 RL+++ + LPPLR+R DI L F++ L P L Y WPG Sbjct: 352 RLAVVDIGLPPLRDRTEDIPELMRHFMQQFSVQLGVPPLP----LSHEVVNRLAGYTWPG 407 Query: 447 NIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNG 506 N+RELRN +ER + P + ++ G Sbjct: 408 NVRELRNYIERSLIL---GHFPAQPSAAPTAAPTPAGELESSLAEVERRHIERVTAACEG 464 Query: 507 DKTAAANYLGISRTTFWRR 525 +KT AA LG+SR T R+ Sbjct: 465 NKTEAARRLGVSRKTLERK 483 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 133/455 (29%), Positives = 211/455 (46%), Gaps = 31/455 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ + + + K + T + + + Q ++ D Sbjct: 9 LLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMSGLDL 68 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 + ++ + A EA G F Y R L Sbjct: 69 LAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDRHLLR 128 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + L M+G+S M+++++ I S A+LI+GE+GTGKEL A+A+ Sbjct: 129 KENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELVARAL 188 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A + P V +NC A+ E LLE+ELFG+E+GAFTG+ + GLFE+A Sbjct: 189 H--------AASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAV-AAKPGLFEVAD 239 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 G TLF+DEIGEMP LQ +LLRVLE+ + R+G Q V+VR+++AT+ ++++++ G Sbjct: 240 GSTLFIDEIGEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGN 299 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YR++++ L+LPPLR R ADI L E FL + + L Sbjct: 300 FREDLYYRINVMSLELPPLRSRTADIPLLVEHFLGKDWR------------IEPTALSAL 347 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT------PDLTPQFMQLLLPELARESAKTPAPR 493 Y WPGN+R+L N +ER + ++ Q+ LP + A + Sbjct: 348 EQYAWPGNVRQLINAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQ 407 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L++ G+K+ AA LGI R +R L+ Sbjct: 408 RQKIVEVLKREKGNKSRAARMLGIDRRKLYRLLEK 442 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 223/466 (47%), Gaps = 35/466 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS------IGVVTYQETIPALVAFQKTFNLRLDQRSYIT 137 +LI + QA+A + G + ++ + + + + Sbjct: 17 VLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMDEVD 76 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSL 197 + + + ++ A AG G Y + + S Sbjct: 77 GLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRASSR 136 Query: 198 RHNTHD--ATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELA 255 L ++ ++G SP M ++ + + A + + VLI+GE+GTGKEL Sbjct: 137 IRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGKELV 196 Query: 256 AQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLF 315 A+AIH+ +K+ PFV +N A+ ES+LE+ELFG+E GAFTG+ R G F Sbjct: 197 ARAIHQ--------NSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATK-RIGKF 247 Query: 316 EIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDM 375 E A+GGTLFLDE+GEMP+ Q +LLRVLEE+ +TR+G + +P++VR+++AT+ +L++ + Sbjct: 248 EYANGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMI 307 Query: 376 QQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQAS 435 ++G FR+DL++RLS++ + LPPL +R ADI L + FLK P + + Sbjct: 308 KKGTFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRP----IPTVTRQV 363 Query: 436 ETVLLHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQ-------------FMQLLLPE 481 + L+ Y WPGNIRELRN++E + + + + D P+ +Q Sbjct: 364 QQALMAYAWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGN 423 Query: 482 LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE G + AAN LGI T +R+++ Sbjct: 424 DGLIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIR 469 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 144/463 (31%), Positives = 221/463 (47%), Gaps = 31/463 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + ++A+ + + + ++ + + A L + I Sbjct: 8 ILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGVQT 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 + L ++ A D+A EA G + +Q Sbjct: 68 LQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERALANVRTR 127 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA-VLIEGETGTGKELAAQA 258 + R + ++G S MEQVR I A S VLIEGE+G+GKE+ A+A Sbjct: 128 RQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSGKEVVARA 187 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH R + P + VNC A+ E LLE+ELFG+E GAFT + + GLFE A Sbjct: 188 IH--------FRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQ-KRGLFETA 238 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 GG++ LDEIG++P Q +LLR+LE K RVGG Q + DVRVI+AT+ NLEE + +G Sbjct: 239 EGGSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEG 298 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DLF+RL+++R+ +PPLRE + D+ L F+ + ++ A+ + Sbjct: 299 RFRADLFFRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQ----VKGVAPAAMEL 354 Query: 439 LLHYDWPGNIRELRNMMERLALFLSV--EPTPDLTPQFMQLLL-----------PELARE 485 L Y WPGN+RELRN++ER + + E P+ P ++ P++ E Sbjct: 355 LRAYHWPGNVRELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGE 414 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A+E+ +G+++ AA LG+SR T RLK Sbjct: 415 GLVLDDVERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKK 457 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 158/468 (33%), Positives = 234/468 (50%), Gaps = 35/468 (7%) Query: 73 AYLKSRLSVPVILIKPSGYDVL--QALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL 130 + + VPVIL+ G + +A A K++ + + K + Sbjct: 16 DRIFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAI---GRPAVEVDHNSKWPVV-- 70 Query: 131 DQRSYITEEDARGQINELKANGTEAVVGAGLITD--LAEEAGMTGIFIYSAATVRQAFSD 188 + E + ++ G +AVV I D E G G+ ++ + +D Sbjct: 71 ----LKSGEFDIAKKHKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDLAD 126 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 + L H R T+Y ++ S +ME +Q AR+ VLI GE+ Sbjct: 127 KNKLLEKKLDHYK-QRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGES 185 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 G GKE+ AQAIH E + HPF+ VNC AI E+LLE+ELFGY+ GAFTG+ + Sbjct: 186 GVGKEIFAQAIHNE--------SHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASK 237 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 G+ G FE+A GTLF DEIG+MP +Q +LLRV++E EV R+GG + VDVR+I+AT+ Sbjct: 238 EGKPGKFELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATN 297 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 NLEE + FR DLFYR+++L L +PPL++R DI LAE FL + + Sbjct: 298 KNLEELVATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMG-----EN 352 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP------DLTPQFMQLLLPEL 482 +Q Q + VL YDWPGNIR+L+N+++RLA+ L Q P Sbjct: 353 KQISQEAVEVLQKYDWPGNIRQLKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSY 412 Query: 483 ARESAK--TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 E ++ LE ++ +K+ AA+ L I R+T +R++K Sbjct: 413 PEEGLNEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKK 460 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 139/453 (30%), Positives = 209/453 (46%), Gaps = 23/453 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + L +L++A +L V + + L Sbjct: 7 ILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMPGRDGLTL 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + ++ ++A +A G + + + L +L+ Sbjct: 67 LEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPL--STDKLLLTVENALKLKR 124 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + LR+R +++ + M +V I A S A V I GETGTGKELAA+ +H Sbjct: 125 LETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTLHE 184 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + +K+ PF+ +NC A+ L+E+ELFG+E+G+FTG+ + G FE AH G Sbjct: 185 --------KSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQR-HIGKFEQAHRG 235 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+MPL +Q +LLRVLEE EV RVGG + +PVDVRVI ATH NLE+ +++G+FR Sbjct: 236 TLFLDEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFR 295 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DLF+R+ + L LPPLR R DI L E F + L Sbjct: 296 QDLFHRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVP----FTAEAVEALQR 351 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTP------DLTPQFMQLLLPELARESAKTPAPRLL 495 Y WPGN+RE+RN++ERL L L S++ Sbjct: 352 YSWPGNVREMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQYERE 411 Query: 496 TPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 L++ T A LG+ R+ +++ ++ Sbjct: 412 VILAELQRQKHHITNTAKALGLERSHLYKKCQA 444 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 150/460 (32%), Positives = 229/460 (49%), Gaps = 33/460 (7%) Query: 86 IKPSGYDVLQALAKAGKLTSSIGVVTYQET-------IPALVAF-QKTFNLRLD---QRS 134 I+ +L ++ +A ++ GV+ Y IP Q F D Sbjct: 117 IQGELSAILNSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNIFEASPDGALATV 176 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 T + GQ ++ + + V + I + G +F + + Sbjct: 177 LKTGKVVFGQRTKVGGSNADVVSNSAPIVVDGKMEGAVCVFQHFTDIMNLMEE---LKKS 233 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 ++ N D ++Y D++G SP++ + A+S++ VLI GE+GTGKEL Sbjct: 234 TTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVLILGESGTGKEL 293 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A AIH A ++ +PF+ VNC AI ++LLE+E FGY +GAFTG+ + + G Sbjct: 294 LAHAIH--------AASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKS-KIGK 344 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+AHGGT+FLDEIG+M L LQ +LLRVL+E E RVGG+Q + VDVRVI+AT+ NL E Sbjct: 345 FELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLREL 404 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++QGRFR DL+YRL+++ + +PPLR R D+ L + L ++ + Sbjct: 405 IRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGK----NVKGISKD 460 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD---LTPQFMQLLLPELARESAKTPA 491 +E VL YDWPGN+REL N++ER+ + E + + E + Sbjct: 461 AEEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQFRMSSERDVDLMPIEQ 520 Query: 492 PRLLTPQQALEKFNGD---KTAAANYLGISRTTFWRRLKS 528 + ++A+ KF K AA L IS T + +LK Sbjct: 521 MEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK 560 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 201/466 (43%), Gaps = 33/466 (7%) Query: 84 ILIKPSGYDVLQALAKAG--KLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + L V ++ + L A L + Sbjct: 7 ILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLVV 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRH 199 + T V+ A + A +A G F Y + Sbjct: 67 LREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERLV 126 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + A G +LG+SP + + + + A VLI GE+GTGKEL A+ + Sbjct: 127 RENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIAREL 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H R + FVAVNCGAI L+E+ELFG+ +GAFT + R + GLF A Sbjct: 187 H--------VRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDA-RTAKRGLFAEAD 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDE+GE+PL Q +LLRVL+E E+ VG ++ V+VRV++AT +L + +G Sbjct: 238 GGTLFLDEVGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGD 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ L++PPLRER D+ LA +F+ L+ + +E +L Sbjct: 298 FREDLYYRLNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPP--VAGLTAEAEALL 355 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELA--------------- 483 Y WPGN+REL N MER L P P+ + P Sbjct: 356 KSYAWPGNVRELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGG 415 Query: 484 --RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + AL K G++T AA L IS ++K Sbjct: 416 DLSLKRAIRELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIK 461 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 145/477 (30%), Positives = 223/477 (46%), Gaps = 55/477 (11%) Query: 92 DVLQALAKAGKLTSSIGVVTY-QETIPALVAFQKTFNL--RLDQRSYITEEDARGQINE- 147 ++ +++A + S VV + + + + LD+ + + Sbjct: 76 TLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIRLLDALRQG 135 Query: 148 --------LKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + + ++ A I E G I VR A + H Sbjct: 136 TSVQRVYHIPRPDSHVLINAAPIRREGEIIGAISIEQDITELVRLNEELAHTTAHL---H 192 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 N + G S ++ + A++ A VLI GE+G GKEL AQAI Sbjct: 193 NLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKELFAQAI 252 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ + PF+A+NCGAI +L E+ELFGY+ GAFTG+ + G+ G E+AH Sbjct: 253 HQA--------SRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAH 304 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+PL LQ +LLR L+E++ RVGG +P+ V+ R+++AT+ LE+ + GR Sbjct: 305 GGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGR 364 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL++ L++PPLRER D+ L + F+ A ++ + L Sbjct: 365 FREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQ----SVPRISPEVMQAL 420 Query: 440 LHYDWPGNIRELRNMMERLALF-LSVEPTPDLTPQFMQLLL------------------- 479 Y WPGNIR+LRN++ERL++ + P+ P ++ Sbjct: 421 FEYTWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPT 480 Query: 480 --------PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 P +A +PA ALE+ G+K AAA LG+SR T + ++K Sbjct: 481 TTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKK 537 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 172/558 (30%), Positives = 266/558 (47%), Gaps = 67/558 (12%) Query: 17 VSVTRLFELFRDISLEFDH-LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYL 75 V + + + D + L + + + E CDAI+ G N Sbjct: 103 VGIIASHNMVMGAAEIQDFLDIPLETYILTQDWNGPKLVDQAVREGCDAIV-GGVNTCSY 161 Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQET--IPALVAFQKTFNLRLDQR 133 S ++VP + I P+G+D A K ++I ++T I L+ K L +D Sbjct: 162 ASSINVPNLFI-PTGHDSFWQGITAAKRAAAISRTEQEKTSRIHVLLNASKEGLLSIDSL 220 Query: 134 SY--ITEEDARGQINELKANGTEAVVGAGLITD-----LAEEAGMTGIFIY--------- 177 Y + AR ++ ++ V+ A + L + A IF Y Sbjct: 221 RYIRMVNHSARKILHISESITGMKVMDAPFPREFKKLLLEDTACTNEIFKYGDMMLNVTK 280 Query: 178 -------SAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 S + +F + D+ + ++ + + D++G+SP + Q Sbjct: 281 YPVMVQNSNMGIVVSFQNISDIMDLENDIRRKIHSKGHV-AKAHFDDIVGESPAIRSTIQ 339 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 T Y+R+ + +L+ G++GTGKEL AQ+IH +K PFVAVNC AI E+L Sbjct: 340 TAQKYSRTDSNILLIGQSGTGKELFAQSIHNH--------SMRKDGPFVAVNCAAIPENL 391 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 LE+ELFGY GAFTG+++GG+ G FE+AH GTLFLDEIGE+PL Q +LLR ++E+E+ R Sbjct: 392 LESELFGYTAGAFTGAQKGGKPGYFELAHNGTLFLDEIGEIPLKFQAKLLRAIQEREIMR 451 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 +G + + V++R+I+AT+ NLE+ +++G FR DLFYRL +LR+++P L R DI LA Sbjct: 452 LGSDRTISVNIRIIAATNRNLEQLVREGEFREDLFYRLDVLRIEIPFLENRREDIPLLAR 511 Query: 411 SFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSV------ 464 +L + + +L +W GNIR+L N+ ERL++ S Sbjct: 512 GWLLKHAP---------GTELSDDACRLLSQAEWNGNIRQLFNICERLSVLCSGSLIAGK 562 Query: 465 ---EPTPDLTPQFMQLLLPELARESAKTPAP------------RLLTPQQALEKFNGDKT 509 P L + LP A S AP T +ALE ++ Sbjct: 563 DVRNVLPTLPQEPGSPALPLPAEPSLPPAAPFRSAEEDSPKDSERETILKALEICRYSRS 622 Query: 510 AAANYLGISRTTFWRRLK 527 AA LGISR+T WR++K Sbjct: 623 RAAALLGISRSTLWRKMK 640 Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 4/145 (2%) Query: 62 CDAIIAAGSNGAYLKS-RLSVPVILIKPSGYDVLQALAKAGK--LTSSIGVVTYQETIPA 118 D II G LKS + +PV+ I D L+ + K + +G++ + Sbjct: 55 ADVIITRGLLAEILKSIQGDIPVVEIAVPATDTLRVVLKCIEAFHARKVGIIASHNMVMG 114 Query: 119 LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFI-Y 177 Q ++ L+ + + +++ G +A+VG A + +FI Sbjct: 115 AAEIQDFLDIPLETYILTQDWNGPKLVDQAVREGCDAIVGGVNTCSYASSINVPNLFIPT 174 Query: 178 SAATVRQAFSDALDMTRMSLRHNTH 202 + Q + A +S Sbjct: 175 GHDSFWQGITAAKRAAAISRTEQEK 199 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 131/446 (29%), Positives = 206/446 (46%), Gaps = 25/446 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQ--ETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + L + + + AL + L + + Sbjct: 3 ILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGLTF 62 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 G +N + V+ A A E+ G Y V + + N Sbjct: 63 LGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVD-----IPQLMDALEKINE 117 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 Y G + Q + + + + L A + A VLI GE+GTGKE+ A++IH Sbjct: 118 QSGDVLTPVENYRFGGVYTQ-EGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHD 176 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + P++A+NC A++E+++E+ELFG+ +GAFT + + + GLFE A GG Sbjct: 177 --------NSKRAQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNK-GLFEAADGG 227 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIGE+ L +Q +LLRVL+E RVG + + +VR+++AT+ NL++ ++G FR Sbjct: 228 TLFLDEIGELSLNVQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFR 287 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL++RL++ +++PPLRER +I PL + F+ L ++ A L Sbjct: 288 EDLYFRLAVFPVEVPPLRERKEEIAPLVKFFIDKHAEKLGK----LIKSADPAYIRKLSD 343 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQAL 501 Y +PGNIREL N++ER + + +T +AL Sbjct: 344 YGFPGNIRELENIVERSIILTTGTKLEPVTLPAFGTER----DGGLSIRGNERDLIIKAL 399 Query: 502 EKFNGDKTAAANYLGISRTTFWRRLK 527 +K G+KT AA L ISR T +LK Sbjct: 400 KKTGGNKTKAAEILQISRRTLHNKLK 425 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 233/473 (49%), Gaps = 32/473 (6%) Query: 67 AAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTF 126 G+ + +K +L ++L +L + I + ++ + A ++ Sbjct: 19 GGGAPPSEIKEVRGK--VLDALGPANILDSLEE-----GVIAIGLDKKVLYLNRAAREML 71 Query: 127 NLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAF 186 L + + + A E + +G E + V A Sbjct: 72 GLSQGEVFGMDCQKAMRSSVCSARCLIEKTIESGEPYRNYEISLTDRHRRTRLVRVNTAL 131 Query: 187 SD-----ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 + + + L+ RY G ++GQS +M ++ + + A+S + Sbjct: 132 LKDADGHVVGGVEIFHDVTQLAELKKELKGRYAFGKIIGQSEKMRELFDLLPVVAQSKST 191 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VLIEGE+GTGKEL A AIH +K PF+ VNC A++E +LE+ELFG+ G Sbjct: 192 VLIEGESGTGKELIAHAIHE--------NSPRKDGPFIKVNCAALSEGVLESELFGHVRG 243 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+ + G FE+A GGTLFLDEIGE+ +Q +LLRVL+E+E RVGG + + VDV Sbjct: 244 AFTGAV-SSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQEEEFERVGGTKTLKVDV 302 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 RVI+AT+ +L+ + G FRRDL+YRL ++ L LPPLRER DI L SFL A Sbjct: 303 RVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDIPLLISSFLSRYNAEFG 362 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT------PDLTPQFM 475 + Q ++ +L+++ +PGNIREL+N++E L + DL P Sbjct: 363 K----NVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLSTGRTIGVRELPRDLAPIPE 418 Query: 476 QLLLPELARE-SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + ++A S + ++A+EK G+ + AA LGI R+T WR+L+ Sbjct: 419 ESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAAKLLGIGRSTLWRKLR 471 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 145/471 (30%), Positives = 231/471 (49%), Gaps = 41/471 (8%) Query: 84 ILIKPSGYDVLQ--ALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ ++ AL + + T +E + L + L + + Sbjct: 13 LLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDGLTL 72 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTRMSLRH 199 + E+ ++ A + A EA G + Y +++ + Sbjct: 73 LRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERARLQ 132 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 D R+ L ++G+S M ++ ++ A+S A VLI+GE+GTGKEL A+A+ Sbjct: 133 RDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKELVARAL 192 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H A +K+ FV VNC AI+ESLLE+ELFG+ +GAFTG+ + R GLFE A Sbjct: 193 H--------AHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKS-RRGLFEEAD 243 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLF+DE+ E Q++LLR L+E EV RVG + VDVR+++AT+ ++E +++ R Sbjct: 244 GGTLFIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKR 303 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DL+YRL+++ L++PPLRER+ D+ LAE FL+ + A S ++ A+ + L Sbjct: 304 FRQDLYYRLNVVALRVPPLRERLEDVPALAEHFLERANAR-----SPNPKRLSAAAVSHL 358 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEP-TPDLTPQFMQLLLPELARESAK---------- 488 + Y +PGN+REL N++E+ A + P+ P + P S Sbjct: 359 MSYGFPGNVRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALG 418 Query: 489 ------------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 QALE+ D A+ LG+S TT WR++K Sbjct: 419 RNASAGPTLAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMK 469 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 140/417 (33%), Positives = 220/417 (52%), Gaps = 17/417 (4%) Query: 116 IPALVAFQKTFNLRLDQRSYITEE--DARGQINELKANGTEAVVGAGLITDLAEEAGMTG 173 + K ++ + Q +A + + NG + +V I + G G Sbjct: 274 LDKKDVLHKKVDIVMPQLKLDQVFKTEAAEVSDLHERNGIKYIVHRIPIKKEGKVIGAIG 333 Query: 174 IFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTIL 233 ++ A L H + + R+ +L + P M++++++ Sbjct: 334 KVMFRQLNEVSALFKRLQKAESKASFY-HQQLQKSETARFTWDHILSKHPYMDKLKKSAA 392 Query: 234 LYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEA 293 A+ + VLI GE+GTGKEL A AIH + FV VNC AI E LLE+ Sbjct: 393 KAAKGRSTVLIRGESGTGKELFAHAIHNS--------SARSDGKFVIVNCAAIPEDLLES 444 Query: 294 ELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGG 353 E FGY+EGAFTG+++ G+ G F++A+GGTLFLDEIG+M + LQ +LLRVL+E+E RVGG Sbjct: 445 EFFGYDEGAFTGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGG 504 Query: 354 HQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL 413 + + VDVR+I+AT+ +LE+ +++G FR DL+YRL+++ L++PPLRER+ D E Sbjct: 505 NSRIKVDVRIIAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHD----VEYLT 560 Query: 414 KVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLT 471 + L++ ++ ++ LL Y+WPGN+REL+N++ER F DL Sbjct: 561 SQLMIELNSMLGTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVEDLP 620 Query: 472 PQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L ++ L ++AL + NG+K AA LGISR+ + +LK Sbjct: 621 DYLIDQLTIPKKEKNGLAEDAELEAIRKALTQANGNKAQAARLLGISRSGLYEKLKK 677 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 223/473 (47%), Gaps = 38/473 (8%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ + + L A + V + + L + + + Sbjct: 1 MSNILVCDDERSICEMLEIALRKEGHKVETVTSGEAAKRKLDSALFDVVVTDIRMPQTNG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIF-IYSAAT---VRQAFSDALDMTR 194 + +++ + ++ A + A A G Y + + + Sbjct: 61 IEVLRHAHQISPDTAVVLITAVDDIEAAVAAVKAGGAADYIRKSPSLIDDIRVAIGNAVE 120 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + A + R L +++G SP M +++ TI + A + + VLI GE+GTGKEL Sbjct: 121 RGSLKRQNLAYKRDAAGRNSLDNIVGTSPAMGKLKNTIRMVASTGSTVLIHGESGTGKEL 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+H + PF ++NCGA E+LLE+ELFGY +GAFTG+ + + GL Sbjct: 181 VARAVH--------TCSPRAGEPFTSINCGAFPETLLESELFGYVKGAFTGAVQN-KRGL 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE++ GGT+FLDEI EM L +Q +LLRVL+E+ + VGG +PVDVRVI+AT+ NL+ Sbjct: 232 FEVSTGGTIFLDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIPVDVRVIAATNKNLDAQ 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + G FR DL+YRLS++ +Q+PPLRERV DI LA FLK A ++R Sbjct: 292 VADGVFREDLYYRLSVIPVQVPPLRERVDDIELLANHFLKKYAPAAGK----SIRAIRVE 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP-------------- 480 S L YDWPGN+R+L N +ER + P Q P Sbjct: 348 SLGDLREYDWPGNVRQLENTIERAVALEMSDVLHVEIPTERQKNKPAAAAAVAGFSGNGQ 407 Query: 481 -----ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + A QQAL++ NG +T AA+ L +S +F +K Sbjct: 408 VAINADGIDMEAYVANIERSLLQQALKQANGVQTKAADLLKLSYRSFRHLMKK 460 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 504 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 130/432 (30%), Positives = 210/432 (48%), Gaps = 32/432 (7%) Query: 106 SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDL 165 +G +T K ++ +E+ + I + E AG D Sbjct: 181 HLGWTLGGDTNVKNRTTLKEDINLVNNIFKASEKYNKNIIKMVYGGKIEDADMAGYFYDN 240 Query: 166 AEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQM 225 + G G + + + + +M+GQS M Sbjct: 241 TDAVGYIGGSSFERIPSERIIKSVT---------HEFKNFNKLNNDKIGFKEMIGQSNSM 291 Query: 226 EQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 285 +++ + I A + +++ GE+GTGKEL +A+H ++ +PFV VNC A Sbjct: 292 KELYELIEKVADKNVNIMVTGESGTGKELVVRALHYGGE--------RRDNPFVKVNCAA 343 Query: 286 IAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEE 345 + + +LE+ELFG+E+GAFTG+ + R G FE+AH GTLFLDEIG+M L +Q + LR++++ Sbjct: 344 MPKDILESELFGHEKGAFTGADKK-RVGRFELAHKGTLFLDEIGDMDLSIQAKFLRIIQQ 402 Query: 346 KEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADI 405 +E RVGG++ + VDVR+I AT+ +L++++++GRFR DL+YRL+ + L +PPLRER DI Sbjct: 403 QEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLRERKEDI 462 Query: 406 LPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE 465 L FLK F + L+ YDWPGN+REL N MER + + Sbjct: 463 PFLIHHFLK----EKGKKFDKIAPKISPEVFDALMEYDWPGNVRELENAMERAIILCGKD 518 Query: 466 PTP-DLTPQFM---------QLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYL 515 + P + + + + +ALEK + ++T + L Sbjct: 519 LIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMEREIIIEALEKCDWNRTKTSKSL 578 Query: 516 GISRTTFWRRLK 527 GISR T + ++K Sbjct: 579 GISRRTLYNKMK 590 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 153/454 (33%), Positives = 213/454 (46%), Gaps = 24/454 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ ++ Q L + + I L A L + + D Sbjct: 7 VLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVDGFDV 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDA--LDMTRMSLRH 199 +L + ++ A + A EA G F Y R Sbjct: 67 LDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERALEQRRLR 126 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 H + R LG ++G S M + I A S A VL+ GE+G+GKEL A+A+ Sbjct: 127 TEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGKELVARAL 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H E +++ PFVAVNC A+ +LLE+ELFG+ +GAFTG+ R GLF A Sbjct: 187 HFEGT--------RRAGPFVAVNCTALPHALLESELFGHVKGAFTGAT-TARRGLFVEAD 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIG+M LQ RLLRVLE+ EV VG VDVRV++ATH +LE +++GR Sbjct: 238 GGTLFLDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGR 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR D+FYRL+++ L+LPPLRER DI L E FL+ + A + +++ + L Sbjct: 298 FRADVFYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPR---SVVQRFSPETLAAL 354 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPT------PDLTPQFMQLLLP--ELARESAKTPA 491 W GN+REL N+++RL + S E P L Q P R Sbjct: 355 GALPWAGNVRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQ 414 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRR 525 A+ + G+KT AA LGI +T RR Sbjct: 415 LETEYIAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 143/453 (31%), Positives = 217/453 (47%), Gaps = 22/453 (4%) Query: 84 ILIKPSGYDVLQALAK--AGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ ++ L+ A + + + + L + L + + Sbjct: 6 VLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGLDGLAV 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 G+ L + V+ A EA G Y A A M R Sbjct: 66 LGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMDKRRLR 125 Query: 202 HDATR--NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R + ++G+SP ++ + I A + + VLI GETGTGKEL A+AI Sbjct: 126 LEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKELVARAI 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + + F+AVNCGA E LL +ELFG+E+GAF+G+ + GLFE+A Sbjct: 186 HAAGLQ-------RANR-FLAVNCGAFTEELLTSELFGHEKGAFSGAM-SLKKGLFEVAG 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GTLFLDEIGEM +Q RLLRVL+E+ RVGG + +PV R+++AT+ +L+ D+++G Sbjct: 237 EGTLFLDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGL 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ L++PPL R DI LA +F + P + + L Sbjct: 297 FRADLYYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVT----GFSAEAVRRL 352 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARESAK----TPAPRL 494 + Y++PGNIREL N+++R + E PQ + P LAR Sbjct: 353 MAYEYPGNIRELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELIALEELER 412 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L +G+KT AA LGI R + WR++K Sbjct: 413 RHIRDILTYCDGNKTRAAEILGIDRVSLWRKVK 445 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 138/459 (30%), Positives = 210/459 (45%), Gaps = 28/459 (6%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITE 138 + ILI + L+ + + E + + + + + + Sbjct: 1 MARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQA--FSDALDMTRMS 196 QI L + A + A EA G Y + ++S Sbjct: 61 TGLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLS 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + + L M+ +S M + +S +A+LI GE+GTGKEL A Sbjct: 121 RIMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLA 180 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 + IH + + FV +NC AI+ +L+E+ELFGYE+GAFTG+ + G FE Sbjct: 181 KYIH--------GQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRS-IGKFE 231 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGTLFLDEIG++PL Q +LLR L+EK++ RVGG+ +PVDVR++ ATH +L+ ++ Sbjct: 232 YASGGTLFLDEIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVE 291 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + RFRRDL+YR+++ L PPLRER DI LA FLK F+ ++ Sbjct: 292 KNRFRRDLYYRINVFPLSPPPLRERKEDIPALAVHFLKE-------SFNGNDVVLTDGAK 344 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE--------LARESAK 488 +L Y WPGN+REL N +ER + T F++ L + Sbjct: 345 RLLAQYPWPGNVRELANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVC 404 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +QAL+ ++T AA LG++R F +K Sbjct: 405 LQTLETDIVRQALDMAGQNQTVAAKMLGLTRAKFRVLMK 443 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 137/459 (29%), Positives = 218/459 (47%), Gaps = 28/459 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ ++ + L + + + ++ + L + + + + Sbjct: 30 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 89 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + EL + ++ T +A G + + V + +S R Sbjct: 90 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRDLE 149 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + R R DMLG+SP M ++R+ I A +S VL+ GE+GTGKEL A +HR Sbjct: 150 GKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAAEVHR 209 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + + PFV VNC AI L+E+ELFG+E+G+F+G+ R G FE+AHGG Sbjct: 210 Q--------SRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAA-ARRRGQFEVAHGG 260 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG+M L Q ++LR L+ EV RVG + VDVR+I+AT+ +LEE+++ G FR Sbjct: 261 TLFLDEIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFR 320 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DLF+RL+++ L +PPLR+R+ D+ LAE F +++ + A L Sbjct: 321 EDLFFRLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLR----PKPVDPAVYDRLRQ 376 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAK------------- 488 + WPGN+RELRN+ ER+ + T P+ + + Sbjct: 377 HRWPGNVRELRNVCERMVIMSGERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKEL 436 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 LE+ + + T AA LG+ RT +++K Sbjct: 437 RDLVERDYILSRLEEHDWNITQAAQALGVERTNLHKKIK 475 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 129/382 (33%), Positives = 211/382 (55%), Gaps = 17/382 (4%) Query: 151 NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALR 210 G + ++ I + G ++ + + F+ + +L + + Sbjct: 330 KGRDFIIMRVPIEREGKVVGALAKTLFKNMEIAKMFAKKVMRLEENLAYYK-EELGKFHS 388 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +++V D++G+SP+M++ + +++++ +LI GE+GTGKE+ + AIH+ Sbjct: 389 SQFVFDDIIGESPRMKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKS-------- 440 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + + P++ VNC A+ E LLE+ELFGY+EGAFTG+R+GG+ G FE+A GT+FLDEIG+ Sbjct: 441 SIRSNGPYIKVNCAALPEDLLESELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGD 500 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 M L +Q +LLRVL+E+E+ R+GG +P+ VDVR+I+AT+ +L + + + +FR DL+YRL++ Sbjct: 501 MSLGMQAKLLRVLQERELERLGGTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNV 560 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 L + LPPLRER DI +A ++ L ++ S T L YDWPGNIRE Sbjct: 561 LTIDLPPLRERKEDIGFIARGLIEKINKRLGTD----IQGVRPESITHLCAYDWPGNIRE 616 Query: 451 LRNMMERLALFLSVE-PTPDLTPQFMQLLLPELARESA---KTPAPRLLTPQQALEKFNG 506 L N++ER + P + L E A + L + G Sbjct: 617 LENILERAIVICDEAWILPKHLALPGVMETITLGAEQTLEYALQAAEREILDKTLRRVQG 676 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 +K AA LGI R+ +++L Sbjct: 677 NKVQAARILGIHRSVLYKKLAK 698 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 213/470 (45%), Gaps = 37/470 (7%) Query: 83 VILIKPSGYDVLQALAKAGKLTSSIGVVT--YQETIPALVAFQKTFNLRLDQRSYITEED 140 IL+ + L++A + +E I L ++ + Sbjct: 4 HILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMSGVE 63 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 A Q+ E V+ A +LA EA G + + + D + + R Sbjct: 64 AIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALEKRRL 123 Query: 201 THDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 + R LR + ++G S M V+ + A + VLI GE+GTGKEL Sbjct: 124 QKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELV--- 180 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 A G+ PFV VNC AI E L E ELFG+E+GAFTG+ + G FE+A Sbjct: 181 -----SDTLRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGAT-SAQPGKFELA 234 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 HGGTL LDEIG+MP +Q +LLR +EEK++ R+GG +PV V+VR+I+AT+ NL E + + Sbjct: 235 HGGTLLLDEIGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARK 294 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DL+YRL + + LPPLR+R DI LAE L+ L P + A+ Sbjct: 295 AFREDLYYRLGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIP----VHGITAAAVQA 350 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPTPDLT-----------PQFMQLLLPELARES- 486 L+++ WPGN+R+L N++ER A+ T PQ P A + Sbjct: 351 LMNHHWPGNVRQLANLLERAAISAQGRITAQDIAAALAVQNGTSPQPCTAQSPHDAPAAE 410 Query: 487 --------AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +AL + G + AA LG++ W +L+ Sbjct: 411 DCLRMPLRETLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQK 460 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 149/461 (32%), Positives = 217/461 (47%), Gaps = 31/461 (6%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETI--PALVAFQKTFNLRLDQRSYITEE 139 IL+ + + A AL + + ++ Sbjct: 4 HSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGMSGM 63 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + I E+ ++ A +LA +A G F + + Sbjct: 64 ELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRFLD 123 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R LR G+ +G+SP M +V I A + VL+ G +G+GKEL A A+ Sbjct: 124 LKRENDR--LRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGAL 181 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR R ++ PF+ +NC A+ E LLE+ELFG+E+GAFTG+ + R G FE A Sbjct: 182 HR--------RSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGA-QQARIGKFEAAD 232 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLF DE+GEMPLPLQ +LLRVLE++EVT VGG+ P V+VR + AT NLEE + GR Sbjct: 233 GGTLFFDEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGR 292 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YR++++ + LPPLRER +D+ L E FL+ A + + + L Sbjct: 293 FREDLYYRINVVPVTLPPLRERGSDVALLTERFLRRFCALHERQAT-----LSEQARLAL 347 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARE------------S 486 L YD+PGN+RELRN +E L + P+ ++ + + Sbjct: 348 LAYDYPGNVRELRNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLA 407 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +ALE+ G K AA+ LGISR W +LK Sbjct: 408 EGVARFERRRIMEALERTGGRKIQAADLLGISRKQLWLKLK 448 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 150/464 (32%), Positives = 217/464 (46%), Gaps = 32/464 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTF--NLRLDQRSYITEE 139 +L+ + Q L A VV + I A+ + F L + Sbjct: 15 VLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSGI 74 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + V+ A + A +A G + + A AL + Sbjct: 75 EVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKSS 134 Query: 200 N--THDATRNAL-RTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + R L R + LG S M+++ + I A + VL+ GE+GTGKE A Sbjct: 135 IVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERVA 194 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +AIH + + + PF+ VNCGA+ E+L+E+ELFG+E+G+FTG+ GLF Sbjct: 195 RAIHDQ--------SDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARS-MGLFR 245 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GGTL LDEIGE+P LQ +LLRVL+E++V VG + VDVRV++AT+ ++E +++ Sbjct: 246 EADGGTLLLDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVR 305 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 QGRFR+DL+YRL+++R++LPPLRER DI LAE FL+ A L +R + Sbjct: 306 QGRFRQDLYYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKD----VRGLTTDAV 361 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT------------PDLTPQFMQLLLPELAR 484 L Y +PGN+REL NMMER + L PE Sbjct: 362 RALDAYSFPGNVRELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCA 421 Query: 485 ESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 QALE+ G + AAA LG+S + RL Sbjct: 422 LDEVIGEVERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAK 465 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 139/508 (27%), Positives = 226/508 (44%), Gaps = 75/508 (14%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYIT- 137 + +L+ ++Q + + + +++ + AL + Sbjct: 1 MAKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRA 60 Query: 138 -EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTR 194 + + + + V+ A + A EA G + Y + + Sbjct: 61 HGLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALS 120 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + + + + L+ +Y ++G + M++V + I A + + +LI GE+GTGKEL Sbjct: 121 YNEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKEL 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+A+H ++ PF+ VNC A+ E+LLE+ELFG+ +G+FTG+ + GL Sbjct: 181 VARALH--------FNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTD-KKGL 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 F+ A GGT+FLDEIG M LQ+RLLRVL+E+EV RVG + P ++VRV++AT+ LE+ Sbjct: 232 FQEADGGTIFLDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKK 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ G FR DL+YRL+++ +Q+P LRER DI LA FL+ ++ P S Q + Sbjct: 292 IKDGTFREDLYYRLNVISIQMPSLRERRDDIPLLAAHFLR---NKIN-PRSGQSVQITRQ 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVE--PTPDLTPQFMQLLLPELARESA----- 487 + +L YDWPGN+REL N +ER A DL P ++ L + +A Sbjct: 348 ALDLLTTYDWPGNVRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADV 407 Query: 488 ---------------------------------------------KTPAPRLLTPQQALE 502 L Sbjct: 408 AQLPQPTTPPTSLVPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLN 467 Query: 503 KF----NGDKTAAANYLGISRTTFWRRL 526 + GDK A +LGIS T +R+L Sbjct: 468 RTLALFGGDKEKTALHLGISLATLYRKL 495 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 142/431 (32%), Positives = 215/431 (49%), Gaps = 26/431 (6%) Query: 102 KLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGL 161 + V + L + + + DQ ++ D + ++ +V + Sbjct: 26 RGYDIQAVGDGALAMERLKSNEYNLIIANDQAPGLSGADI---VRKMDGKIPVILVSSNA 82 Query: 162 ITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQ 221 D A EA +G + V A+ + + + ++ Q Sbjct: 83 SVDQAVEAMKSGARDFLLKPVSAQILGAVVGRALGVSKSNGTPKAAGKSPV----KIITQ 138 Query: 222 SPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 281 +M++ + + A S AAVLI GE+GTGKEL A+ IH +K FVAV Sbjct: 139 DDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYS--------SSRKDKNFVAV 190 Query: 282 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLR 341 N A+ E+LLE+ELFG+E+GAFTG+ + G FE+A GGTL LDEI EM + LQ +LLR Sbjct: 191 NVAALPETLLESELFGHEKGAFTGAI-NRKIGKFELASGGTLLLDEITEMDIGLQAKLLR 249 Query: 342 VLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRER 401 VL+E EV RVGG PV VDVRV++ T+ ++E+ + G+FR DL+YRL+++ L+LPPLRER Sbjct: 250 VLQESEVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPLKLPPLRER 309 Query: 402 VADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALF 461 +D++ LAE F++ A ++ + ++ LL+ DWPGN+REL N +ER L Sbjct: 310 SSDVILLAEHFIRKYNARDGK----NVKGLTKNAQNTLLNLDWPGNVRELENTIERAVLL 365 Query: 462 LSVEPTP------DLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYL 515 + + P + S QAL++ G++T AA L Sbjct: 366 CKGDQIDHNDLFMEPPPPKALPRQDSIPSVSTTLREMEEQMIYQALDQTEGNRTHAAQIL 425 Query: 516 GISRTTFWRRL 526 GIS T +L Sbjct: 426 GISVRTLRNKL 436 >UniRef50_C8X0P6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0P6_DESRD Length = 452 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 139/443 (31%), Positives = 212/443 (47%), Gaps = 23/443 (5%) Query: 95 QALAKAGKLTSSIGVVT--YQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANG 152 + L + T ++ L + + E + +I Sbjct: 17 RELESLLEQDGYAVTTTRDFESLERHLDGRDFDLVILCLPLAPDQELNLLEKIKSHSPLT 76 Query: 153 TEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL--DMTRMSLRHNTHDATRNALR 210 ++ + + A + G F Y A + L + L R+ +R Sbjct: 77 EVILITSTPNVEGAVASMKKGAFHYMAQPYKPNEVRLLTSNALEKRLLRLEVQELRSMVR 136 Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 + L +++G++P+M+ +++ I A VLI GETGTGKEL A+ IH Sbjct: 137 NKESLPNLIGKNPRMQNLKREIARVAPLDCNVLILGETGTGKELVAKTIHN--------M 188 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 + F+AVNCGA+ E LL ELFG+E+ AFTG++R + G+FE GGTL LDEIG+ Sbjct: 189 SMRADQKFLAVNCGALNEELLGNELFGHEKEAFTGAQR-VKKGVFEALAGGTLLLDEIGD 247 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPL +Q +LLRVL+EK + R+GG + +PVD RV++AT+ L+ED+Q G FR+DL+YRL++ Sbjct: 248 MPLAMQVQLLRVLQEKSIMRIGGTREIPVDTRVLAATNRPLQEDVQAGGFRQDLYYRLNV 307 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 L++PPLRER DI FL+ + + + +L HY +PGN+RE Sbjct: 308 FTLRIPPLRERADDIPLFCRYFLEKYTLEFNK----TIERFSDEVVEILQHYQFPGNVRE 363 Query: 451 LRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESA-----KTPAPRLLTPQQALEKF 504 L N++ER + P+ ++ + L Sbjct: 364 LENIIERAIVLCDGPVLERRHLPRRLRSPRALQYETKTRDHLLPLAELERQYIEDVLSIV 423 Query: 505 NGDKTAAANYLGISRTTFWRRLK 527 G+K AA LGI RTT WR+LK Sbjct: 424 GGNKKKAAEVLGIDRTTLWRKLK 446 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 172/562 (30%), Positives = 258/562 (45%), Gaps = 74/562 (13%) Query: 13 VIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNG 72 I V + + I D + +++ E + + N D +I G Sbjct: 97 KIAIVGSQDMIYGAKSIEDIMD--IKLAVVEVREEDDAEQSIRNIKNSGVDIVI-GGVMS 153 Query: 73 AYLKSRLSVPVILIKPSGYDVLQALAKAGKLTS---------SIGVVTYQETIPALVAFQ 123 + RL + + I+ + AL +A ++ + ++ Sbjct: 154 TQIAERLGLKTVFIETGREAIYHALREAKRVARVRRQEQERSEQFRTILDYSTEGIITVD 213 Query: 124 KTFNLRLD-----QRSYITEEDARGQINELKA---------------------NGTEAVV 157 + L + + ++ E +++L NG + V Sbjct: 214 AAGAINLVNAAAMKITGLSGEAVGLAVDKLLPQLGLSRVLASGRAELGEVETVNGQQVAV 273 Query: 158 GAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGD 217 I + G F V + + + L R D Sbjct: 274 NRVPIIIRGQAVGAVATF----QPVADIQALEGKI--------RQKIYKRGLVARLTFDD 321 Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 +LG SP + Q +++ ++ VLI GETGTGKE+ AQ+IH ++ P Sbjct: 322 ILGDSPAIRQTIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNA--------SSRRKGP 373 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FVAVNC A+ E+LLE+ELFGY EGAFTG+ RGG+ GLFE+AHGGT+FLDEI E+ LQ Sbjct: 374 FVAVNCAALPENLLESELFGYAEGAFTGAARGGKMGLFELAHGGTIFLDEISEISPKLQG 433 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 RLLRVL+E+E+ R+G + +PVDVR+I+AT+ +L + MQ G FR+DL+YR+ +L+L LPP Sbjct: 434 RLLRVLQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQDLYYRVDVLKLVLPP 493 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI+PL + FLK+ + P +++ ++ +L Y WPGN+RELRN+ ER Sbjct: 494 LRERQEDIIPLMQHFLKLYCLRSNRP----VKEIGPDAQAMLRRYHWPGNVRELRNIAER 549 Query: 458 LALFLSVEPTPDLTPQFM------------QLLLPELARESAKTPAPRLLTPQQALEKFN 505 LA+ S + + P A A +ALE+ + Sbjct: 550 LAVLASGPVIGARDIAAVLTGETGRRKAINETAEPAAALAGANDVDLNRAILLKALEEAD 609 Query: 506 GDKTAAANYLGISRTTFWRRLK 527 AA LGISRTT WRRLK Sbjct: 610 YHYGRAAARLGISRTTLWRRLK 631 Score = 88.2 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 15/243 (6%) Query: 11 KPVIWTVSVTRLFELFRDISLEFDH-LANITPIQLGFEKAVTYIRKKLANERCDAIIAAG 69 + + +++ + E + + I + + R D ++A G Sbjct: 2 GKITVIIPYSQMQAVVERTFQEQNDPGWELDIIFATGVREIARRRDFST----DVVVARG 57 Query: 70 SNGAYLKSRL-SVPVILIKPSGYDVLQALAKAGKL--TSSIGVVTYQETIPALVAFQKTF 126 A LK + PV+ + SGYD+L+A+ + + I +V Q+ I + + Sbjct: 58 VTAAALKRLMGDTPVVDMPVSGYDILRAVKACQQRFAATKIAIVGSQDMIYGAKSIEDIM 117 Query: 127 NLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAF 186 +++L E+DA I +K +G + V+G + T +AE G+ +FI + Sbjct: 118 DIKLAVVEVREEDDAEQSIRNIKNSGVDIVIGGVMSTQIAERLGLKTVFIETGREAIYHA 177 Query: 187 SDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEG 246 R + + Y ++ + A I G Sbjct: 178 LREAKRVARVRRQEQERSEQFRTILDYSTEGIITVDAA--GAINLVNAAAMK-----ITG 230 Query: 247 ETG 249 +G Sbjct: 231 LSG 233 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 144/450 (32%), Positives = 221/450 (49%), Gaps = 23/450 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI ++ LA + + ++ + + L + ++ + Sbjct: 6 ILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGMSGTEL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I E + A + A +A G Y V + A+ +S R +T Sbjct: 66 LARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALSCRGHT 125 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + L ++G+SP ++ + I L A + + VLI GE+GTGKE+ A+ +H Sbjct: 126 NPPRSQDLPR----HGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGLH- 180 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + PF+A NCGAI L+E+E+FG+E+GAFTG+ R +AG E+A G Sbjct: 181 -------VASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRS-QAGKLEMAGSG 232 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDE+G+MPL +Q +LLR L+E+E TR+GG+QP+ + R+I+ATH +L + ++ G FR Sbjct: 233 TLFLDEVGDMPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFR 292 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL+++ L +PPLRER D+ PL FL+ L P A+ + Sbjct: 293 EDLYYRLNVIPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEV----DIATAALAAMEA 348 Query: 442 YDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARE---SAKTPAPRLLTP 497 Y WPGNIR+L N++ERL + P M+ E R + A Sbjct: 349 YSWPGNIRQLENIVERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYDLHAVEREAV 408 Query: 498 QQALEKFNGDKTAAANYLGISRTTFWRRLK 527 AL K +K+ AA LGISR R+K Sbjct: 409 VSALNKAQSNKSQAALLLGISRKQLHTRMK 438 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 129/408 (31%), Positives = 217/408 (53%), Gaps = 21/408 (5%) Query: 127 NLRLDQRSYI--TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ 184 + + + T ++ Q++++K G+ + I E G+ G ++ Sbjct: 177 VIENTRMPIVLETGKEEVAQLHKIK--GSYMIASRIPIVKNGEIIGVVGKVLFRNVKELN 234 Query: 185 AFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLI 244 + + + L R + Y L +++G+S + + + A +++ VLI Sbjct: 235 SLYKRISVIEKELATYKSRF-REFNKANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLI 293 Query: 245 EGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFT 304 GE+GTGKE+ A AIH E + PFV VNC AI LLE+ELFGYE GAFT Sbjct: 294 LGESGTGKEIFAHAIHSE--------SNRHEGPFVKVNCAAIPSDLLESELFGYEAGAFT 345 Query: 305 GSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVI 364 G+++ G+ G FEIA+ GT+FLDEIG+MPL +Q +LLRV++E+EV +VGG +++R+I Sbjct: 346 GAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKINIRII 405 Query: 365 SATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPF 424 +AT+ NLE +++G+FR DL+YRL+++ +++PPLRER DI+ ++ +K L Sbjct: 406 AATNRNLERLVEEGKFREDLYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDLDKK- 464 Query: 425 SAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT---PDLTPQFMQLLLPE 481 ++ + +E L Y+W GN+REL N++ER + DL + + Sbjct: 465 ---VKGISKEAEQYLKIYEWKGNVRELENILERAINIMENSEIIQVKDLPKEITGKKVSM 521 Query: 482 LARESAK-TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + ++ AL +G+K+ AA L I RT+ + +++ Sbjct: 522 VPKKLQDILAESEKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEK 569 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 141/481 (29%), Positives = 218/481 (45%), Gaps = 50/481 (10%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITE 138 + IL+ + + L+ + V + E + L Sbjct: 1 MTHILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMS 196 +I L V+ D A +A +G Y + + A + ++ Sbjct: 61 LSYLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLR 120 Query: 197 LRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + A R + RY +M+G SP +E +R+ + A + VLI GE GTGKEL A Sbjct: 121 GLERENRALREKVSARY---EMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVA 177 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 +++H ++S PFV VNC AI E+L+E+ELFG+E+GAFTG+ R G FE Sbjct: 178 RSLHEG--------SVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGAL-SRRPGKFE 228 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A GG LFLDEIG+M L Q R+LRVL+E+++TR+GG + +PVDVRV++AT+ +L + Sbjct: 229 QASGGVLFLDEIGDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIA 288 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 + FR DLFYRL+++ +++PPLRER++DI L E F+++ + + + Sbjct: 289 RKEFREDLFYRLNVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHR----PKLFSREAL 344 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQFMQLL---------------- 478 L WPGN+REL+N +ERL + DL P Sbjct: 345 EALCERTWPGNVRELKNTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRG 404 Query: 479 ------------LPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + L + G+ AA LG+ RT+ RR+ Sbjct: 405 GSPPDPGPGASGMEPDLPLREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRI 464 Query: 527 K 527 + Sbjct: 465 R 465 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 499 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 139/381 (36%), Positives = 214/381 (56%), Gaps = 16/381 (4%) Query: 148 LKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRN 207 L+ N VV IT G + IY ++ M L + ++ Sbjct: 309 LEINAKPCVVSTLPITKEGNTKGFV-VKIYEDLDNLADIVQQINRINMQLNYYKNE-LYK 366 Query: 208 ALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARH 267 T Y +G ++ + ++ ++ +L RS++ VLI GE+GTGKEL A +IH Sbjct: 367 VNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNA----- 421 Query: 268 DARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDE 327 ++ PF+ VNC AI L EAELFGYE+GAFTG+R+ G+ G FE+A GT+FLDE Sbjct: 422 ---SNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDE 478 Query: 328 IGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYR 387 IG+MPL LQ++LLRV+++KE+ RVGG + VDVR+I+AT+ +L+ + +G FR DL++R Sbjct: 479 IGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFR 538 Query: 388 LSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGN 447 ++++ L++PPLR+R DI LA++F++ L + +A+ L YDWPGN Sbjct: 539 INVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRR----VEGITEAALEALTRYDWPGN 594 Query: 448 IRELRNMMERLALFLSVEPTP--DLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFN 505 IREL N++ER+ + DL + + A+ + + T Q AL + Sbjct: 595 IRELENIIERMLNYRESGLIELQDLPEEIVGRPGGMAAKATQTLAVMEMETIQAALAEAG 654 Query: 506 GDKTAAANYLGISRTTFWRRL 526 G+K+ AA LGISR+ + +L Sbjct: 655 GNKSKAARLLGISRSKLYEKL 675 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 129/463 (27%), Positives = 213/463 (46%), Gaps = 22/463 (4%) Query: 75 LKSRLSVPVILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQ 132 ++ + + LI V +++ +E I + + Sbjct: 1 MEEQTKLKTALIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVR 60 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDAL 190 + + G I + + ++ D+ +A G F Y A + Sbjct: 61 MQGMGGMEVLGWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQ 120 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDM-LGQSPQMEQVRQTILLYARSSAAVLIEGETG 249 + S + + + LG SP M+ + +L A + VLI GE+G Sbjct: 121 RAEKASAPPAQTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESG 180 Query: 250 TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRG 309 TGKEL A+AIH ++ + FV V+C A+ E+LLE+ELFG+ +G+FTG+ + Sbjct: 181 TGKELVARAIHYH--------SRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQS 232 Query: 310 GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 369 + GLFE+A+ GT F DEI + + +Q +LLRV++E+E T+VGG + VD+R++ A++ Sbjct: 233 -KKGLFELANHGTFFFDEISNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNR 291 Query: 370 NLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALR 429 +L + + +FR DLFYRL ++ + LPPLRER DI L F+ + Sbjct: 292 DLRAAIAENKFREDLFYRLHVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGRE----AP 347 Query: 430 QGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPEL---ARE 485 + + + VLL Y WPGN+REL N +ER + P+ PQ ++ P+L + + Sbjct: 348 KVSREAMDVLLSYAWPGNVRELENTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDK 407 Query: 486 SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + L + NG AA LGI+R T ++K Sbjct: 408 MVSLKDLERDYIRFVLSRTNGGIQKAAGILGINRKTLSMKMKK 450 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 131/488 (26%), Positives = 212/488 (43%), Gaps = 57/488 (11%) Query: 84 ILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVA-FQKTFNLRLDQRSYITEED 140 +L+ + + + + + I L + L I+ +D Sbjct: 5 VLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQD 64 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLR 198 ++ + VV A D +A G + + + M Sbjct: 65 TLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALSMGAL 124 Query: 199 HNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQA 258 D + R D++G SP M V++ ARSS +LI GE+G GKE+ A+A Sbjct: 125 KGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIARA 184 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 +H + PFVAVNCGAI E+L+E+ LFG+E+G+FTG+ G F+ A Sbjct: 185 VH--------GSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGAT-DKHLGKFQEA 235 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 +GGTLFLDE+GE+PL +Q +LLR L+E E+ +G + V VDVR++SAT+ +L + + +G Sbjct: 236 NGGTLFLDEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEG 295 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 RFR DL+YRL++ ++ P LRER DI L ++F++ A+ + Sbjct: 296 RFREDLYYRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGK----AVVGAAPETLAC 351 Query: 439 LLHYDWPGNIRELRNMMERLALFLS----------------------------------- 463 L +DWPGN+R+L N + R + Sbjct: 352 LTGFDWPGNVRQLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGP 411 Query: 464 ----VEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISR 519 E +L + + + Q A+E ++G + A LGI R Sbjct: 412 VPSAGELAAELPQPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGR 471 Query: 520 TTFWRRLK 527 +T +R+++ Sbjct: 472 STLYRKVR 479 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 136/455 (29%), Positives = 204/455 (44%), Gaps = 24/455 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK-------TFNLRLDQRSYI 136 ILI + + L V + +A L + + + Sbjct: 4 ILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTGM 63 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD--ALDMTR 194 + + E K ++ A A +A G + V D + Sbjct: 64 DGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIFE 123 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 MS T ++ + M+G++ M++V +TI A S A VLI+GE+GTGKE+ Sbjct: 124 MSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTGKEM 183 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH ++ PF+AV C A++ ++LE+ELFG+E+GAFTG+ R + G Sbjct: 184 VARAIH--------FNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRT-KPGK 234 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE+A GGTLFLDEI E+ +Q +LLR ++E+E RVGG + + DVR+++AT+ NL Sbjct: 235 FELAQGGTLFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTL 294 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + G FR DL+YRL ++ + LPPLRER DI L + L+ Q Sbjct: 295 VASGMFRNDLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEI----IPQE 350 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESAKTPAP 492 + +L + WPGN+REL N + R + L + Sbjct: 351 TMNKILEHSWPGNVRELENTLRRAVILSHGNMLLPESLHLEEGCDGQERFPLLLKPLHEV 410 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 Q L +K AA LGISR T RR+K Sbjct: 411 EREHIQNVLCYVRNEKKRAAEILGISRPTLDRRIK 445 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 165/535 (30%), Positives = 249/535 (46%), Gaps = 53/535 (9%) Query: 35 HLANITPIQLGFEKAVTYIRKKLANERCDAIIAAG-SNGAYLKSRLSVPVILIKPSGYDV 93 N + + + K+ E CDA+I+ +N +K+ V +I+ S + Sbjct: 116 FNINFVVYVIDNPDQIEDMVKRAIEEGCDALISGSHANKCVIKNGFKVYSGIIENSEEAI 175 Query: 94 LQALAKAGKLTSSIGV-VTYQETIPALVAFQKTFNL--RLDQRSYITEEDARGQINELKA 150 +AL A L ++ E + L + +R I + + Sbjct: 176 GRALNSAASLLKNMEYEANQMEFLRLLAENVTDGLIFVDDRERIGIANANVGRIFPNRRP 235 Query: 151 -NGTEAVVGAGLITDLAEEAGMTG---------------IFIYSAATV----RQAFSDAL 190 G + +A ++ + + Sbjct: 236 VAGKGFQESFPFMAKNYLKACREKQHLDNEIYRTRDMNIAVDFTPVMIGGEYKGMIITIH 295 Query: 191 DMTRMSLRHNTHDATRNA--LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 D+ R+ R + N L +Y D++ QSP ME V + +A ++ VLI GET Sbjct: 296 DIGRLQQREAQIRSKLNEMGLYAKYQFSDIIHQSPVMEHVIERAEKFAAVTSNVLIYGET 355 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL AQ+IH +KS PFVA+NC + E+LLE+ELFGYEEGAFTG+ + Sbjct: 356 GTGKELVAQSIHNA--------SKRKSGPFVAINCASFPENLLESELFGYEEGAFTGAVK 407 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GG+ GLFE AHGGTLFLDE+ E+P+ Q +LLRVL+E+EV RVGG + V +DVR+I+AT+ Sbjct: 408 GGKPGLFEQAHGGTLFLDEVSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATN 467 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 NL++ G FR DL YRL +L L LPPLR+R DI LAE +L F Sbjct: 468 KNLKQMTLDGLFREDLLYRLDVLNLPLPPLRKRREDIRLLAEHYL----MEYKEQFETCA 523 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQF-------------- 474 + + T+L Y + GNIRELRN++ER+++ L + Sbjct: 524 DHFTEDAMTLLSSYPFMGNIRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTA 583 Query: 475 -MQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + + A A + ++ L++ +K+ A LG++RTT WR++ Sbjct: 584 GQVGRIQDQAAAPAYIRNIQKEEIERLLKECGYNKSEVARRLGLNRTTLWRKMGK 638 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 70/201 (34%), Gaps = 6/201 (2%) Query: 11 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGS 70 + + + V L + R + D K + + CD +IA G Sbjct: 2 RKITYFVPYPELAPVVRRLM---DQPCYKGVFANASIKYFPRMYDLEVEDGCDLVIARGY 58 Query: 71 NGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTFNL 128 + ++ R + ++ I +G D++ A+A+ + T IG++ + + + FN+ Sbjct: 59 SIHVIRERFNGAIVEIPITGSDIVNAIAQCREHTDCQKIGLIGDYSNMKDIQSMSSLFNI 118 Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 + + G +A++ + G ++ +A Sbjct: 119 NFVVYVIDNPDQIEDMVKRAIEEGCDALISGSHANKCVIKNGFK-VYSGIIENSEEAIGR 177 Query: 189 ALDMTRMSLRHNTHDATRNAL 209 AL+ L++ ++A + Sbjct: 178 ALNSAASLLKNMEYEANQMEF 198 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 135/454 (29%), Positives = 204/454 (44%), Gaps = 23/454 (5%) Query: 83 VILIKPSGYDVLQALAKAGK-LTSSIGVV-TYQETIPALVAFQKTFNLRLDQRSY-ITEE 139 +LI ++ LA+ + + I + E + A + Q Sbjct: 39 HLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGDRDGL 98 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + I + T V+ A + A +A G F + V Sbjct: 99 ELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAAEHHQ 158 Query: 200 NTHDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 ++ R L L +G + + I A + A VL++GE+GTGKEL A+ Sbjct: 159 LRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKELIAR 218 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 A+H + + PFVAVN GA+ ESLLE+ELFG+E+G+FTG+ R + G FE Sbjct: 219 AVHD--------LSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQ-KPGCFEQ 269 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDEI E+P Q LLRVLE + RVGG + + + R++SAT+ + ++ Sbjct: 270 ASGGTLFLDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVED 329 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G FR DL+YRL+I+ +++PPLR R DI L E FLK A P ++ + + Sbjct: 330 GAFREDLYYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPL----KRIVPEAMQ 385 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAKT----PAP 492 +L WPGN+R+LRN +ERL + + E P + + + Sbjct: 386 MLSQSHWPGNVRQLRNHIERLVVTVPAETILAADLPCELHQQNAAQSTALKTLVEITESA 445 Query: 493 RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + AL + A LGIS T ++ Sbjct: 446 EKTGIELALSAKKSHREQTAKALGISVRTLHYKM 479 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 147/456 (32%), Positives = 206/456 (45%), Gaps = 26/456 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +L+ V + A + + + A+ L + + Sbjct: 3 LLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLTL 62 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + + + ++ A D A G Y L M R+ H Sbjct: 63 FRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDEL-LLRMQRVRDEHAF 121 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + G +LG S M +VR + A S VL+ GETGTGK+L A+ IH Sbjct: 122 RKGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHE 181 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 R + PFV VNC AI E+L E+ELFG+E+GAFTG+ R R G FE A GG Sbjct: 182 --------RSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRK-RIGRFEAADGG 232 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDE+GE+ Q +LLR LE VG ++ V VDVRVI+AT+ +L + +G FR Sbjct: 233 TLFLDEVGELAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFR 292 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 +DL+YRL+++ L PPLRER D+ L +FL L P + Q A L Sbjct: 293 KDLYYRLNVIDLHAPPLRERRGDVPVLTAAFLARIAGRLGRP----VPQLEPAVVAALAA 348 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPE---------LARESAKTPA 491 +D+PGN+REL++ +ER P + P + LP LAR Sbjct: 349 HDYPGNVRELQHALERAVALARGGPIRLEHLPPDLAGPLPAGEAAPAGEGLARLGEAVEQ 408 Query: 492 PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ALEK G + AA LGISR + W RL+ Sbjct: 409 FEQQYIRRALEKTGGHRARAAALLGISRKSLWERLR 444 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 157/552 (28%), Positives = 255/552 (46%), Gaps = 58/552 (10%) Query: 13 VIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNG 72 I + + ++ + + ++ +L KKL ++ + I G Sbjct: 95 KIGFIGLESSYKTAKRFKEISN--FDLEIPKLDSFHEFENTIKKLIDDGIEIFI-GGKTT 151 Query: 73 AYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSS-IGVVTYQETIPALVAFQKTFNLRLD 131 + S+ + P I + + ++ +A L + I ++ + + +D Sbjct: 152 KEITSKYNKPCIETEVEKSSIHASINEAIHLYNIGIEKRINNSITEEILECTHSGIIAID 211 Query: 132 QRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGI---------------FI 176 + + Q L N + + L +D ++ G F Sbjct: 212 K--NHSPLFINNQAKRLLFNQVDKFIKDYLTSDDILDSLKNGHSLCNNIISFKGLSLTFD 269 Query: 177 YSAATVRQAF------SDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQ 230 + + ++ + + + + + D+LG S + Sbjct: 270 CFPIIIDKLHFGCVATIQDIENIQSTEKEIRESLISKSHCAKSTFNDILGSSDALMHSVN 329 Query: 231 TILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL 290 +A+S + ++I GE+GTGKE+ AQ+IH + + PFVA+NC AI E++ Sbjct: 330 MAKKFAKSDSTIIITGESGTGKEIFAQSIHNY--------SNRFNGPFVAINCAAIPENI 381 Query: 291 LEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 350 LE+ELFGY +GAFTG+R G+AG+FE+AH GT+FLDEIGE+ +Q +LLRVL+E+EVTR Sbjct: 382 LESELFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEIGEISKDVQVKLLRVLQEREVTR 441 Query: 351 VGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAE 410 +G + VP++VRVI+AT+ NL E + FR DLFYRL +L+L LPPLRER DI L Sbjct: 442 IGDTKVVPINVRVITATNKNLVEQIDNNNFREDLFYRLCVLKLDLPPLRERKEDIEQLTY 501 Query: 411 SFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDL 470 S + + + P S ++ +L YD+PGNIR+L+N++ERL + + Sbjct: 502 SII----SHYNKPVS-----ISDSALKLLSRYDFPGNIRQLKNIVERLVVMCDDNFVDEH 552 Query: 471 TPQFMQLLLPELARESAKTPAP--------------RLLTPQQALEKFNGDKTAAANYLG 516 + + P ++ PA + LEK NG K+ AN LG Sbjct: 553 LVSDILISEPHFRKDINLIPAINYSPVLSDNKIVDYEKKLILETLEKNNGVKSITANQLG 612 Query: 517 ISRTTFWRRLKS 528 IS TT WR+LK Sbjct: 613 ISTTTLWRKLKK 624 Score = 65.8 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 70/209 (33%), Gaps = 6/209 (2%) Query: 13 VIWTVSVTRLFELFRDISLEFDHLANITP--IQLGFEKAVTYIRKKLANERCDAIIAAGS 70 + ++ ++L F D E +I ++ + + L N II G Sbjct: 4 EVVVIAPSKL---FSDTVYEVLEELHIKIPLYIATGKETIE-LADNLINLGTKVIITRGQ 59 Query: 71 NGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL 130 N L+ +S+P++ + D+ + KA K +S IG + + + F++ N L Sbjct: 60 NVDLLRKHVSIPIVDVGYKYEDIFYSYKKALKYSSKIGFIGLESSYKTAKRFKEISNFDL 119 Query: 131 DQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL 190 + + + I +L +G E +G ++ + I + A + Sbjct: 120 EIPKLDSFHEFENTIKKLIDDGIEIFIGGKTTKEITSKYNKPCIETEVEKSSIHASINEA 179 Query: 191 DMTRMSLRHNTHDATRNALRTRYVLGDML 219 + + ++ Sbjct: 180 IHLYNIGIEKRINNSITEEILECTHSGII 208 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 141/450 (31%), Positives = 220/450 (48%), Gaps = 22/450 (4%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK---TFNLRLDQRSYITEED 140 +LI + L+ LA + V + A A K + + Sbjct: 9 VLIVDDEPNALKVLAAILREEGY-SVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGIQ 67 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + E + + A D A A G F Y + + R Sbjct: 68 LMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQRSL 127 Query: 201 THDAT-RNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + + ++G +P+M ++ +T+ S ++VLI GETGTGKEL A+++ Sbjct: 128 KRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARSL 187 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H ++ PFVAVNC A+ L+E+ELFGYE+GAF+G+ R G FE A Sbjct: 188 HYG--------SVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAF-SRRIGRFEEAA 238 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIGE+ +PLQ +LLRVL+EKE+ R+G ++ + V+ R+IS+T+ N+ ++ G Sbjct: 239 EGTIFLDEIGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGN 298 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DLFYRL+++++Q+PPLR+R DI LA ++ A + + V Sbjct: 299 FREDLFYRLNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-----VLRFDDEVMQVF 353 Query: 440 LHYDWPGNIRELRNMMERLALFL-SVEPTPDLTPQFMQL--LLPELARESAKTPAPRLLT 496 L+YDWPGNIR+L N++ER + T P+ ++ + E ++ Sbjct: 354 LNYDWPGNIRQLGNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQVRTLRELEEAA 413 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRL 526 ALE+ G+K+ AA LGISR ++RL Sbjct: 414 ILAALEESGGNKSHAAKMLGISRKALYKRL 443 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 139/485 (28%), Positives = 216/485 (44%), Gaps = 56/485 (11%) Query: 84 ILIKPSGYDVLQALAK--AGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI +D+L L AG+ + + + +++ + + + + Sbjct: 5 LLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKSGIEV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS----L 197 + ++ + T A EA G F Y + Sbjct: 65 LKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALECNLLS 124 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 R + R + M+G SP+M ++ + + A S A VLI+GE+GTGKEL A+ Sbjct: 125 RKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKELLAR 184 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 A++ +K+ PF+AVNC A+ E+LLE+ELFG+E+GAFT + R G FE Sbjct: 185 AVYN--------NSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAH-SRRIGKFEQ 235 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 +GGT+FLDEIGEM Q + LRVLE +E RVGG++ + VDVRVI+AT+ +L ++++ Sbjct: 236 CNGGTIFLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKE 295 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 FR DL+YRL ++ LPPLR+R DI L E F+K ++ + Sbjct: 296 KTFRMDLYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGK----NIKAVAPETLA 351 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPA------ 491 +L + W GNIREL+N++ +F + + F L + + A Sbjct: 352 MLTSHPWEGNIRELKNVINSATVFCRGDIL--VPGDFESFLTAKAGFKEVDLEAAGDDYY 409 Query: 492 -----------------------------PRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 A+EK N ++ AA LGISR T Sbjct: 410 EVFWSMLEPVFDGICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTL 469 Query: 523 WRRLK 527 RL+ Sbjct: 470 RDRLE 474 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 134/406 (33%), Positives = 223/406 (54%), Gaps = 23/406 (5%) Query: 129 RLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSD 188 + R T G++ ++ NG + + + G G ++ Sbjct: 146 TMLHRVLKTGNIESGEVQKI--NGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYG 203 Query: 189 ALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 L+ ++ + + + + +N R +Y D++G S + ++ A +++ VLI GE+ Sbjct: 204 KLNKSKNTHKCYDNKSEKNR-RAKYFFKDIVGDSSESNNIKSLAKKSANTNSNVLIVGES 262 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL A +IH ++ PF+ +NCGAI LLE+ELFGYE+GAFTG+++ Sbjct: 263 GTGKELYAHSIHNA--------SNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKK 314 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 GG+ G FE+A+GGT+FLDEIG+MP+ +Q +LLRV++E+EV +VGG+ +DVR+I+AT+ Sbjct: 315 GGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGGNILKKIDVRIIAATN 374 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 NLE+ +++ +FR DL+YRL+++R+ +P LRER DIL +++ +K L + Sbjct: 375 KNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVKKVSHRLGI----CI 430 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE--PTPDLTPQFM------QLLLP 480 + + ++ L +Y+WPGNIREL N++ER A L + P P+ + + Sbjct: 431 KGISKEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEILKSYIVKAPTK 490 Query: 481 ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 E LEK NG+K + LGISR ++++ Sbjct: 491 ENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKI 536 >UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMW7_ACIBL Length = 463 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 138/462 (29%), Positives = 213/462 (46%), Gaps = 31/462 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI L+ +++A + + + ++ + L I + Sbjct: 5 ILICDDEALTLKTISRALEAEGYEIFLAQSGEQAVEIAQREHPDIALLDVVLPGIDGVEV 64 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRH 199 Q+ L ++ ++ A + + A EA G + Y + + + Sbjct: 65 LRQLKRLDSSIVVVMMSAYRVVERAVEALKLGAYDYLTKPFHVSDMVNTIGRASEVLALR 124 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSS-AAVLIEGETGTGKELAAQA 258 + R RY G ++ ++ + + + A S +LI+GE+GTGKE+ A+ Sbjct: 125 VRVRDSVQDARGRYDFGRVVTRNAALAAMLEQAKKAAESDKTTILIQGESGTGKEVMAKT 184 Query: 259 IHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 318 IH + P V++NC A+ ++LLE+ELFGYE GA+T +RR + GL E A Sbjct: 185 IHYY--------SPRAQQPLVSLNCAALPDTLLESELFGYEPGAYTDARRR-KEGLLEKA 235 Query: 319 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQG 378 H GTLFLDEIG M +Q +LLRVLEE R+GG + + VDVR+I+AT+ L++ + +G Sbjct: 236 HAGTLFLDEIGNMSFSVQAKLLRVLEEGNFMRLGGTRTIQVDVRIIAATNKVLKDAVSRG 295 Query: 379 RFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETV 438 FR DLFYRL+++ L +PPLRER D +P+A +K L F+ + Sbjct: 296 EFRDDLFYRLNVMPLFIPPLRERKEDTVPIALDMMKRFNKDLKKNFT----GMTPEAAEC 351 Query: 439 LLHYDWPGNIRELRNMMERLALFLSVEPT--PDLTPQFMQLLLPELARESA--------- 487 L Y WPGNIRELRN+MER + + DL + + P Sbjct: 352 LRAYTWPGNIRELRNVMERTMILATHGDISLDDLPHEIREFDAPPETSSGEVEISSLTTP 411 Query: 488 --KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + L +KT AA LGI T+ R+LK Sbjct: 412 FVTLEELEDRYILEVLTATGNNKTHAARILGIHPTSLARKLK 453 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 138/409 (33%), Positives = 216/409 (52%), Gaps = 33/409 (8%) Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 T R Q++ L+ G VV I G G+ I+ + + D Sbjct: 222 VVLKTGVPERNQVHRLQ--GQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKILERFDQ 279 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 +++ + + D+LG+S + + ++ ARS A+VLI GE+G GK Sbjct: 280 KDGAVKPLFSKPKKKQI----HFEDILGESQPISETKKMARKAARSKASVLITGESGVGK 335 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 E A+AIH + PF++VNC AI ++LLE+ELFGY EGAFTG+++ G+A Sbjct: 336 EQFARAIHGAGVTN--------NGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKA 387 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G FE+A+ GTLFLDEIG+M L Q ++LRVL+E+E+ R+GG P+PVD R+I+AT+ +L+ Sbjct: 388 GKFELANHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLK 447 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 + +++G FR DL++RL ++ +Q+PPLR R DI + E L+ +A + Sbjct: 448 QMVREGTFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEE----KTLD 503 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP--DLTPQF-------------MQL 477 + ++ HY+WPGN+REL N++ERL DL +F +Q Sbjct: 504 KEVLRLMFHYNWPGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQS 563 Query: 478 LLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L + ++ L++ G+K+ AA LGISR T + +L Sbjct: 564 LPAKQEAMKVVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKL 612 >UniRef50_A3ERY0 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERY0_9BACT Length = 471 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 144/461 (31%), Positives = 216/461 (46%), Gaps = 26/461 (5%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK----TFNLRLDQRSYIT 137 P ILI VL+ + K + + + +K +L L + S Sbjct: 13 PSILIVDDDPVVLKQMTWLFKGEYPVLTADSASSAIEIFVREKPPVAILDLSLGKDSGQD 72 Query: 138 EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDAL-----DM 192 D E + ++ + A EA G + +V + + Sbjct: 73 GIDLLRFFAEADPHFHGIILSGSIDRPRALEAVRLGAYDLLDKSVDPEELKRVVGRACNR 132 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 +S + ++ ++P M+++ + + + + +VLI GE+GTGK Sbjct: 133 ALLSRTPARPKELSPSAEESNPFPGIVTKNPGMKEMLRILQKISATDVSVLITGESGTGK 192 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A+AIH R +K+ PFVA+NCGAI ESLLE+ELFG+E+GAFTG+ RA Sbjct: 193 ELFARAIHE--------RSPRKNGPFVAINCGAIPESLLESELFGHEKGAFTGATES-RA 243 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G FE AH GTLFLDE+ E+ + LQ +LLRVL++K V RVG +DVR+I+AT+ L Sbjct: 244 GKFEAAHHGTLFLDEVAELQIELQVKLLRVLQDKIVERVGSRNGKQLDVRIIAATNQPLN 303 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E M +GRFR DL+YRLS++ LPPLR+R D+L LA+ FL+ + P + Sbjct: 304 ELMARGRFREDLYYRLSVMSFHLPPLRDRGEDVLLLAQHFLEKFRTEYNKP---QVIDFN 360 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSV-----EPTPDLTPQFMQLLLPELARESA 487 + V+ +DWPGNIREL N ++R + S E + Sbjct: 361 RECLDVIRKHDWPGNIRELENRIQRAVIIASGKWVTREDLDIGLDSRKHGESTLSMNLTG 420 Query: 488 KTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +A E+ G+ + A +G SR T +K Sbjct: 421 AREEAEKRMLVEAFEQARGNISHVARMIGTSRPTVHALIKK 461 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 137/449 (30%), Positives = 215/449 (47%), Gaps = 36/449 (8%) Query: 103 LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARG--QINELK----------- 149 + V + A L ++ + Q++ + Sbjct: 157 RDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGLSQTSEVL 216 Query: 150 -ANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNA 208 G +V I + G G ++ Q ++ + + + + Sbjct: 217 TIRGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKVTFFQ-EELQKN 275 Query: 209 LRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHD 268 + ++ DM+ +SPQM++++ I + A S++ VLI GE+GTGKE A AIH Sbjct: 276 RTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHAIH-------- 327 Query: 269 ARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEI 328 + PF+ VNC +I ESL+E+E+FGY GAFTG+ + G+ G E A GGTLFLDEI Sbjct: 328 LGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEI 387 Query: 329 GEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRL 388 GEMPL LQ +LLRVL+++E+ R+G + + V++R+++AT+ L + +G FR+DL+YRL Sbjct: 388 GEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRL 447 Query: 389 SILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNI 448 +++ L LPPLRER+ DI PL F+ L A + + LL Y WPGNI Sbjct: 448 NVINLHLPPLRERLEDIEPLTHFFISKFNDIL----KANVSGITPNAMATLLQYSWPGNI 503 Query: 449 RELRNMMERLALFLSVEPTPDLTPQFM---------QLLLPELARESAKTPAPRLLTPQQ 499 REL N++ER + + Q++ + R + Sbjct: 504 RELENVVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAA 563 Query: 500 ALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ALEK G+KT AA L +SR+ + +L Sbjct: 564 ALEKAGGNKTKAAKLLNLSRSRLYDKLNK 592 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 143/453 (31%), Positives = 202/453 (44%), Gaps = 23/453 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIG--VVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + L +E + AL L + + + Sbjct: 6 ILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGMDGLEL 65 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 + VV D A A G F Y A V A + Sbjct: 66 LAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALEKNAMR 125 Query: 202 HDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R L ++GQS ME +R++I+ AR VL+ GETGTGKEL A+ I Sbjct: 126 RELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKELVARTI 185 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H + F+AVNCGA +E L+ ELFG+E AFTG+ R GL E A Sbjct: 186 HD--------LSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAG-ARRKGLIEAAA 236 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDEIGE+PL +Q +LLRVL+E+ RVGG + P+D RV+SAT+ +L+++ + G Sbjct: 237 GGTLFLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGA 296 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR+DLFYRL ++ L +PPL ER DI LA FL + + L Sbjct: 297 FRQDLFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNV-----RLSPEVLDSL 351 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-----DLTPQFMQLLLPELARESAKTPAPRL 494 L Y++PGN+REL N++++ + + Sbjct: 352 LLYEYPGNVRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTLEEHEK 411 Query: 495 LTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE+ G+K+ AA LGI R + WR+LK Sbjct: 412 AYIRDVLEEVEGNKSKAARVLGIDRVSLWRKLK 444 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 132/322 (40%), Positives = 192/322 (59%), Gaps = 16/322 (4%) Query: 211 TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDAR 270 +Y D++GQS M+++++ I + S + VLI+GE+GTGKEL AQ+IH Sbjct: 317 AKYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHN--------N 368 Query: 271 QGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGE 330 ++S FVA+NCGAI +SL+E+ELFGYEEGAFTG++RGG G FE+A+ GTLFLDEIGE Sbjct: 369 SNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIGE 428 Query: 331 MPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSI 390 MPL +Q LLRVL+E +TR+GG++ V VDVR+I+AT+ NL+++++ G FR DL+YRLS+ Sbjct: 429 MPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLSV 488 Query: 391 LRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE 450 + + +PPLRER DI L E FLK+ L + + + LL Y WPGN+RE Sbjct: 489 IPIYVPPLRERNGDIGILIEHFLKIKADKLGK----LIPEIRKNIYENLLSYGWPGNVRE 544 Query: 451 LRNMMERLALFLSVE----PTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNG 506 L N +E + + L + + + G Sbjct: 545 LENCIENIVNMNGNTSFNFENRTIKKDVNCYSDVSLEYDMCSLEELEKRAISICINQCGG 604 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 + + A LGI+R+T + ++K Sbjct: 605 NISKACRILGINRSTLYIKIKK 626 >UniRef50_B5JRE5 Putative PEP-CTERM system response regulator n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JRE5_9BACT Length = 444 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 143/450 (31%), Positives = 210/450 (46%), Gaps = 21/450 (4%) Query: 85 LIKPSGYDVLQALAKAGKLTSSIGVVTYQE-TIPALVAFQKTFNLRLDQRS-----YITE 138 +I ++ + + I +E + A L Sbjct: 1 MIVDDDEEIRTQMRWSLGTDYEIFQAGNREGALQAFKENSPPVVLLDLGLPPRPNLIDEG 60 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 + +I ++ ++ D A EA G + + + V + + Sbjct: 61 MNTLAEIVQISPATKVIIISGQGERDNALEAIGRGAYDFMSKPVDTEELQLVLKRCYYVA 120 Query: 199 HNTHDATRNALR-TRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 D + MLG S M++V I A S A V+I GE+GTGKE+ A Sbjct: 121 DLERDYVAMQRKLNEDAFEGMLGTSEPMQKVFGLIRKVATSDAPVMILGESGTGKEMVAS 180 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 AIH R + PFVA+NC AI ESLLE+ELFG+E+G+FTG+ G R G E Sbjct: 181 AIHN--------RSSQVDGPFVAINCSAIPESLLESELFGHEKGSFTGAD-GKRIGKIEQ 231 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A+GGTLFLDEIGE+PL +Q +LLR L+E + RVGG + +PV R+++AT+ +L++ M Sbjct: 232 ANGGTLFLDEIGEVPLNVQVKLLRFLQESYIERVGGREQIPVKARIVAATNADLKKGMAD 291 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G FR D ++RLS++ L LPPLR+R DI +A SFLK A + ++ Sbjct: 292 GSFREDFYFRLSVVELNLPPLRDRGEDIEFIATSFLKRFAAEAG----NSNLSFSASALK 347 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELARESAKTPAPRLLT 496 + Y W GN+REL+N + R A+ P+ +P + Sbjct: 348 GIRSYPWTGNVRELQNRVRRAAIMSEGNKVNPEDLQLPSTRAIPSGTTLKEARESLEKEM 407 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + AL+K G TAAA LGISR TF+ + Sbjct: 408 IEAALKKHKGKVTAAAAELGISRPTFYELI 437 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 209/469 (44%), Gaps = 43/469 (9%) Query: 86 IKPSGYDVLQALAKAGKLTSSIGVVTYQET-IPALVAF--QKTFNLRLDQRSYITEEDAR 142 + ++ V+ + + L + DA Sbjct: 9 VLDGDRKTRDLVSAFLTYKGYETVILDDNADLFDTDRTTSPRILVADLVSLFARSG-DAL 67 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTH 202 QI + V +D A I+ + +++ M + + Sbjct: 68 QQIWQTDPEQVAIV---YAQSDAARTLPHDERLIFLPKPLNLDELESVVMRALEYQALKV 124 Query: 203 DATRNALRTRYVL--GDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 + ++G+S QM + + I A SSA VLI+GE+GTGKELAA+AIH Sbjct: 125 RMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESSATVLIQGESGTGKELAARAIH 184 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 + + S FV VNC AI + LLE+ELFG+ +G+FTG+ R G FE+A Sbjct: 185 Q--------LSSRSSKNFVPVNCAAIPDDLLESELFGHVKGSFTGAYAN-RIGRFEMADK 235 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIG+M LQ +LLRVL+ KE VG + VDVR+I+A++ NL+E + F Sbjct: 236 GTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDF 295 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R DL+YRLS++ + +PPLR+R DI L F + ++ + + +L Sbjct: 296 REDLYYRLSVIPITIPPLRDRREDIPLLINHF----QGQFNRDRRRLVKGFTREALEMLC 351 Query: 441 HYDWPGNIRELRNMMERLALFLS-VEPTPDLTPQFM--------------------QLLL 479 +YDWPGN+REL N++ER+ T D P+ + L Sbjct: 352 NYDWPGNVRELENLVERMITMKESGFITVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELP 411 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 PE ++ A QAL + G+K AA L + RTT +LK Sbjct: 412 PEGICLNSAVDAFENGLIMQALHRTGGNKKEAAALLNLKRTTLIEKLKK 460 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 132/452 (29%), Positives = 206/452 (45%), Gaps = 23/452 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ +L+ + + + QE + L A + + + D Sbjct: 7 ILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMGGMDL 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I A + A A +A G Y L + + + Sbjct: 67 FHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDL-VLKVKEILRKPVP 125 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 H + + ++ G+S M +++ + A S VLI GE+G GKE A+ IH+ Sbjct: 126 HLPAQETISPKHEFWG--GKSASMRELQDLVERIAPSDVNVLILGESGVGKERVARLIHQ 183 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + ++ PFV V+CG+ LLE+ELFG+ GAFT + R + GL E A G Sbjct: 184 KG--------PRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRD-KKGLIEAAERG 234 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TLFLDEIG + +Q RLLR LE++++ R+G + +PV+ RVI+AT+ +L ED++ G FR Sbjct: 235 TLFLDEIGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFR 294 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL ++ L++PPLRER DI LA+ FL+ + + P + Q + L Sbjct: 295 EDLYYRLRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPV----RLPQETIRWLSE 350 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELAR-----ESAKTPAPRLLT 496 Y WPGN+REL+N +E A+ L L +S Sbjct: 351 YPWPGNVRELKNALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGDSLSLEESERNA 410 Query: 497 PQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +AL++ + AA LGISR ++K Sbjct: 411 IVRALQQAGWVQKDAAQLLGISRRAINYKIKK 442 >UniRef50_B5XN53 Sigma-54 dependent transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=B5XN53_KLEP3 Length = 627 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 160/554 (28%), Positives = 249/554 (44%), Gaps = 55/554 (9%) Query: 7 LNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAII 66 + I + + R + I + + + + K L+ +I Sbjct: 90 AKNKSQKIAAIGFPQFCRALRHYQSMTNDEFKICQVYNHHD--IENVIKNLSENGYHMVI 147 Query: 67 AAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSI------------GVVTYQE 114 G A + + ++ VI + QA+ +A L I + +E Sbjct: 148 -GGLTVAEMAKKYNLNVIEGDADNNSIEQAINEAHGLLKYINRENLKLVMSHAALNQSRE 206 Query: 115 TIPALVAFQKTFNLRLDQRSY---ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGM 171 I + + N+ + + E + +++ I + E Sbjct: 207 GIMCVDQLGEIININAIGMTLFQCQVGDKIFK--KEAFKDIYASMINESNIKEQTIEING 264 Query: 172 TGIFIYSA-----ATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQME 226 T + I + + + + N+ + T Y +++ QSP M Sbjct: 265 TLVCISVRHFSNRQNTYAIITGLNQESTLWQQTNSKKSKLRGYATSYSFDNIIAQSPIMH 324 Query: 227 QVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 286 QV Q L A+ V + G+TGTGKEL AQ+IH + PF+A+NC AI Sbjct: 325 QVIQKARLCAQHDLPVHLLGDTGTGKELFAQSIHHV--------SARSHGPFIAINCAAI 376 Query: 287 AESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK 346 ESLLE+ELFGY EGAFT +R+GG+ G+FE+A GT+F+DEI E PL +Q +LLRVL+EK Sbjct: 377 PESLLESELFGYAEGAFTNARKGGKPGVFEMATNGTVFIDEISEAPLSVQVKLLRVLQEK 436 Query: 347 EVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADIL 406 + +R+GG + D R+I+A++ +L + + G FR+DL+YR++IL LQLPPLRER DI+ Sbjct: 437 QFSRLGGDSLLSADFRLITASNKDLGQLIASGEFRQDLYYRINILELQLPPLRERPEDIM 496 Query: 407 PLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEP 466 L L+ L + L +Y+WPGNIREL+ ++ RL + L + Sbjct: 497 VLIHHLLQQQNKHL---------TFTPDAVNCLQNYEWPGNIRELQAVIYRLIVLLEGDT 547 Query: 467 TPDLTPQFMQLLLPE-------------LARESAKTPAPRLLTPQQALEKFNGDKTAAAN 513 Q + L P +A ES +EK +GD+T A+ Sbjct: 548 VDKAVLQQISHLSPPCHQGVSLVTDLAVVADESDLLKKQEKQLIASVIEKTDGDRTKASA 607 Query: 514 YLGISRTTFWRRLK 527 LGIS TT WR+LK Sbjct: 608 ILGISPTTLWRKLK 621 Score = 63.2 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 85/221 (38%), Gaps = 13/221 (5%) Query: 8 NDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIA 67 +++ VI++VS T + + I + + + ++ II+ Sbjct: 2 KNNEIVIFSVSSTITQRIMNVLIER---KLEIPVYEFRYSDVLNK-ANEMIQSGTRIIIS 57 Query: 68 AGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFN 127 G A L++ + +PVI I + V + L +A + I + + + AL +Q N Sbjct: 58 RGGTAALLRNNIPIPVIEIAHDFHGVYRILQEAKNKSQKIAAIGFPQFCRALRHYQSMTN 117 Query: 128 LRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIF-IYSAATVRQAF 186 D I L NG V+G + ++A++ + I ++ QA Sbjct: 118 DEFKICQVYNHHDIENVIKNLSENGYHMVIGGLTVAEMAKKYNLNVIEGDADNNSIEQAI 177 Query: 187 SDA--------LDMTRMSLRHNTHDATRNALRTRYVLGDML 219 ++A + ++ + H + +R + LG+++ Sbjct: 178 NEAHGLLKYINRENLKLVMSHAALNQSREGIMCVDQLGEII 218 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 148/466 (31%), Positives = 228/466 (48%), Gaps = 37/466 (7%) Query: 72 GAYLKSRLSVPVILIKPSGYDVL--QALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLR 129 Y+ + + P+ L+ GY V + + ++ + + + + + Sbjct: 22 YEYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAI--GKHVTEIIENTRLHVVIS 79 Query: 130 LDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDA 189 + E D I G EA+V + + G G + ++ + Sbjct: 80 ----TEKPEIDYLQNIK-----GREAIVQRIPVFMDGKLLGAIGKISFRDVDEVKSLAKK 130 Query: 190 LDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETG 249 L + + ++ Y D+LG S + V++ A ++ VLI+GETG Sbjct: 131 LQVAENKAKKFENELR---YTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQGETG 187 Query: 250 TGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRG 309 GKEL A AIH + PFV++NC AI + LLE+ELFGY+EGAFTG+R+ Sbjct: 188 VGKELFAHAIHN--------NSNSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKN 239 Query: 310 GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHC 369 G+ G FE+A GGT+FLDEIG+MPL +Q++LLRVL++++ RVGG VDVRVI+AT+ Sbjct: 240 GKIGKFELADGGTIFLDEIGDMPLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNV 299 Query: 370 NLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSL-AALSAPFSAAL 428 N+E+ ++ FR DLFYRL+ + L +PPLRER DI + + LK + Sbjct: 300 NIEDKVRNNEFRADLFYRLNTISLIIPPLRERYEDISLIVDKSLKNLNSSEYG------N 353 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAK 488 ++ + L YDWPGNIREL N++ERL + + + + + R+S Sbjct: 354 KRFSSQAMQTLTMYDWPGNIRELLNVVERLFFLVDSDLVEENHVKQALSGINSEERKSNT 413 Query: 489 TPAP------RLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ALE NG+K AA LGI RTT ++++K Sbjct: 414 NALEDQIHLTEKDAIINALESCNGNKAQAAKLLGIHRTTLYQKMKK 459 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 138/462 (29%), Positives = 216/462 (46%), Gaps = 37/462 (8%) Query: 88 PSGYDVLQALAKAGKLTSSIGVVTY-QETIPALVAFQKTFNL-----------RLDQRSY 135 P+ + +L ++ +A + ++ G++ Y E + +K + + Sbjct: 10 PTLHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKV 69 Query: 136 ITEEDARGQINELKANGTEAVVGAGLIT-DLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 + + I L ++ I + E G + AT++ Sbjct: 70 LENQQPVRDIYHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSEE 129 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + ++ G + ++ + + A++ A +LI GE+G GKEL Sbjct: 130 LQQLKQQMIQNNRD----DPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKEL 185 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 AQAIH + F+ +NCGAI +L E+ELFGYE GA+TG+ +GG+ G Sbjct: 186 FAQAIHEA--------SLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGK 237 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 E+A GGTLFLDE+GE+PL +Q +LLR L+EKE+ R+GG P +DVR+I+AT+ LE+ Sbjct: 238 IELADGGTLFLDEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDM 297 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 + G FR DLFYRL++ +PPLRER DI LA F K + P Q Sbjct: 298 VLNGTFRSDLFYRLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKP----TPFVHQE 353 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-----LTPQFMQLLLP---ELARES 486 + L Y WPGNIRELRN +ERL + + L PQ P + Sbjct: 354 ATKRLHAYSWPGNIRELRNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLT 413 Query: 487 AKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + + Q L++ G+K+ A LG+SR ++++K Sbjct: 414 DERESLEKTRILQTLQQTYGNKSITAKKLGMSRANLYKKIKK 455 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 220/472 (46%), Gaps = 42/472 (8%) Query: 84 ILIKPSGYD---VLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED 140 +LI L A+ A + E + L +F L + Sbjct: 7 VLIVDDEESQRAGLAAMVSAWGMLPKTA-ADGNEALETLNSFPADVILTDLNMPGLDGFG 65 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAG-MTGIFIYSAATVRQAFSDALDMTR--MSL 197 ++ E V+ A + A + G + + ++ + L + Sbjct: 66 FLQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRAGSHAE 125 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + L + LG+M+G+SP+M+++ + S A VLI GE+GTGKE+ A+ Sbjct: 126 LNQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKEMVAR 185 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 +H A ++ PFVA+NC A+ ESL+E+ELFG+E+G+FTG+ RAG FE+ Sbjct: 186 TLH--------ALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATER-RAGCFEL 236 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GTL LDEIGEMP+ Q +LLR+LE+ +V R+GG VDVRV++AT+ EE +Q Sbjct: 237 AQNGTLLLDEIGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQG 296 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 G R DLFYRL++ + LPPLR+R DI +A++ + A L+ + + A T Sbjct: 297 GHLREDLFYRLNVFHVHLPPLRDRKDDIQAMADALI----ADLNRKHECRVTEIAAAVMT 352 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAK-------- 488 L ++WPGN+RELRN++ER + P F+Q + Sbjct: 353 CLQRHNWPGNVRELRNVLERAVILAGEGTIEVKHLPVFLQNRPATVVASDEPAAVAATAA 412 Query: 489 -------------TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + LE N +KT AA+ LGIS T +LK Sbjct: 413 DDLETVRFLIGTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLK 464 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 161/536 (30%), Positives = 242/536 (45%), Gaps = 68/536 (12%) Query: 35 HLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVL 94 N+ I++ E + + + II + GA ++L + LI V Sbjct: 117 LNLNLIKIEIKKETEALFQIAEAKEKGAKIII-GDTIGACCAAQLGLKSRLIISGKEAVA 175 Query: 95 QALAKAGKLTSSIG----------------------------VVTYQETIPALVAFQKTF 126 AL++A +L +I + Y + + + Sbjct: 176 NALSEAFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSE 235 Query: 127 NLRLDQRSYITEEDARGQINELKAN--------GTEAVVGAGLITDLAEEAGMTGIFIYS 178 + + I I K GT I E G F Sbjct: 236 VIGKKVETVIPNTRLYEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATF--- 292 Query: 179 AATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARS 238 + + + L + D++ S +M+ V YA Sbjct: 293 ---------QDVAEIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALL 343 Query: 239 SAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 298 + VLI GETGTGKEL AQ+IH +K+ PFVA+NC A+ E+LLE+ELFGY Sbjct: 344 DSTVLILGETGTGKELFAQSIHNA--------SERKNGPFVAINCAALPENLLESELFGY 395 Query: 299 EEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVP 358 EGAFTG+R+GG+AGLFE+AH GT+FLDEIGEMP+ LQ++LLRV++EK+V R+G + +P Sbjct: 396 AEGAFTGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIP 455 Query: 359 VDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLA 418 VDVR+I AT+ NL E + +G+F+RDLFYR+SIL++ +P LRER DI L F+K Sbjct: 456 VDVRIICATNRNLIEMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSL 515 Query: 419 ALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-------DLT 471 ++ +L +D+PGN+REL +++ER + Sbjct: 516 ICKKH----IQGITSRGMELLKKWDYPGNVRELESIIERACAICEGNIIDVRDIKLYNDQ 571 Query: 472 PQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + E ++ ++ +G+ + AA LGISRTT WR+LK Sbjct: 572 DSMENKVSSQSFLEIKPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLK 627 Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 3/207 (1%) Query: 13 VIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNG 72 ++ L E+ ++ +FD N+ LG I ++ + D II+ G Sbjct: 7 IVLIAPYKNLLEIAIEVKKDFDFAFNLE---LGDLSEGVKIAQEWEKKGADIIISRGGTY 63 Query: 73 AYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQ 132 +K +S+PV+ IK S +D+L+ + IGV Y I + NL L + Sbjct: 64 QLIKEAVSIPVVEIKVSPFDILRQFKGLIGYSEPIGVAGYMNVIYGSEVIGEVLNLNLIK 123 Query: 133 RSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDM 192 E +A QI E K G + ++G + A + G+ I S Sbjct: 124 IEIKKETEALFQIAEAKEKGAKIIIGDTIGACCAAQLGLKSRLIISGKEAVANALSEAFR 183 Query: 193 TRMSLRHNTHDATRNALRTRYVLGDML 219 +++ + +V ++ Sbjct: 184 LAEAIKSEKEKTEQIKTIVDFVHDGII 210 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 220/468 (47%), Gaps = 34/468 (7%) Query: 80 SVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK---TFNLRLDQRSYI 136 IL+ + + + + + + + V Y + A+ F + + + Sbjct: 3 DKQRILLIDNEEGLCRMMEQVLLDSGYL-VRAYTSPVKAMEEFSAAAWDLVITDIKMPGM 61 Query: 137 TEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTR 194 T + ++ E + ++ A +++ +A G + + + + Sbjct: 62 TGLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNALQ 121 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + + R + + +++G S + V + A ++LI GE+GTGKEL Sbjct: 122 QAQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGKEL 181 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 AQA+H +K F+AVNCG + ES+LE+ELFGY +GAFTG+ R GL Sbjct: 182 IAQAVHIH--------SNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAEN-RQGL 232 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 E A GGTLFLDE+G +P+ +Q LLR L+EKE RVG VDVR+ISAT+ +L+E Sbjct: 233 LEAADGGTLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEG 292 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ G FR DL+YRL+++ L LPPLR+R+ DI LA F+ + A++ + Sbjct: 293 VRTGTFREDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFG----TAVKAFERD 348 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-------LTPQ--------FMQLLL 479 + +L ++WPGNIR+LRN++E + + P+ +L Sbjct: 349 AMQILCTFEWPGNIRQLRNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVL 408 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + + + L+K G +AA G++ T +R++K Sbjct: 409 SDDLPFTEALERFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIK 456 >UniRef50_Q2P7A6 Propionate catabolism regulatory protein n=12 Tax=Xanthomonadaceae RepID=Q2P7A6_XANOM Length = 581 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 235/541 (43%), Positives = 324/541 (59%), Gaps = 33/541 (6%) Query: 2 AHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANER 61 A P PVIWTVSV+RL L D+ EFD A I I LGF +AV I +L ER Sbjct: 54 ATPETAGAALPVIWTVSVSRLTGLLADVIPEFDQRARIEQINLGFAEAVEVIGLRLRRER 113 Query: 62 CDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVA 121 CDA++A GSN AYL+SRL++P I+ +G+D+++ALA+A ++ IGVVT+ +P+ A Sbjct: 114 CDALVAGGSNAAYLRSRLALPFAHIQATGFDLMEALARARRIAPRIGVVTHASDVPSFRA 173 Query: 122 FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT 181 FQ +F+L ++ R ++T EDAR I +L+A+G + +VG G+ D AE+AG+ G+ +YSA + Sbjct: 174 FQHSFDLDIEHRRFVTAEDARDCIADLRASGIQVIVGTGMAIDFAEQAGLPGVLLYSADS 233 Query: 182 VRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAA 241 VRQA A+ + + + R +LG+ M QVR+ + LYA + Sbjct: 234 VRQALEQAIALGAAPSTDDLAGRSATRRARRAD--ALLGEDSAMLQVRELVQLYAPHAGT 291 Query: 242 VLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEG 301 VLI GETGTGKEL A+ +H ++ FVA+NCGAI+ESLLEAELFGY +G Sbjct: 292 VLISGETGTGKELVARQLH---------AGSRRRGRFVAINCGAISESLLEAELFGYSDG 342 Query: 302 AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDV 361 AFTG+RRGG GL E A GTLFLDEIGE+P+ LQTRLLRVLEE EV RVG PV VDV Sbjct: 343 AFTGARRGGHTGLIEAAQDGTLFLDEIGELPMALQTRLLRVLEEHEVLRVGATVPVAVDV 402 Query: 362 RVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALS 421 RV++A+ L++ ++QGRFRRDLFYRL+ LR+ LPPLR R +I L + + Sbjct: 403 RVVAASLQELQQLVEQGRFRRDLFYRLAALRIALPPLRSRHDEIALLLAHYFQ------- 455 Query: 422 APFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPE 481 A+ L + WPGN+RELRN++ERL + +P L+ + ++ PE Sbjct: 456 -QLGNIASPLSPAALQRLQQHTWPGNVRELRNLVERLCIHWKSQPHDSLSLEQLERWTPE 514 Query: 482 LARESAKTPAPRLLT--------------PQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 L + AL++ NG++ AA LG+SRTT WR ++ Sbjct: 515 LFDTHFGNREAPRELADLATSRLQVTATAVRAALDRANGNRALAAQALGVSRTTLWRWMQ 574 Query: 528 S 528 + Sbjct: 575 A 575 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 208/466 (44%), Gaps = 48/466 (10%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 IL+ + +A+A +L + V + + L + + + + Sbjct: 8 ILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMMPMDGITL 67 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNT 201 +I + ++ A D A +A +G + A Sbjct: 68 LKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAH----------- 116 Query: 202 HDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHR 261 + L ++ P ++ A++ A VL+ GE+G GKE+ A+ IHR Sbjct: 117 --INKYELPASDDGSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVARFIHR 174 Query: 262 EYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG 321 + +K+ PFVA+NC AI +SLLEA LFGYE+GAFTG+ + +AG FE A G Sbjct: 175 Q--------SARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGA-QQAQAGKFEQAQDG 225 Query: 322 TLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFR 381 TL LDE+ EMP+ LQ +LLRVL+E+EV RVGG +PV +++R+I+ ++ ++ E + +G FR Sbjct: 226 TLLLDEVTEMPMGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFR 285 Query: 382 RDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLH 441 DL+YRL++ + +P LR+R DI+P+A F+ + A+E L Sbjct: 286 EDLYYRLNVFPVGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMS----LSPAAEAALRE 341 Query: 442 YDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELA------------------ 483 + WPGN+REL N+++R + + E A Sbjct: 342 HSWPGNVRELENVIQRALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTD 401 Query: 484 --RESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ + L + G + A LGIS T +L+ Sbjct: 402 TDKKVDNMKDLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQ 447 >UniRef50_Q3B305 Two component transcriptional regulator, Fis family n=9 Tax=Chlorobiaceae RepID=Q3B305_PELLD Length = 492 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 127/469 (27%), Positives = 197/469 (42%), Gaps = 37/469 (7%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVV--TYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 +LI + + + +V E I ++ L + Sbjct: 28 VLIADDDETSRRIFSHFVRKMGYTALVVQNGMECIESITEQSPDVILLDINMPGKDGFEV 87 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAAT--VRQAFSDALDMTRMSLRH 199 + ++ A A + G + Y + + + S Sbjct: 88 MLHMKTEHIKTPVIIITASHDIPQAVKCIKLGAYEYLTKPLNIDRLEIVMRNSLAESALQ 147 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + LRTR + ++G+S ++ + + + VLI GE+GTGKEL AQAI Sbjct: 148 IEVKNLKKELRTRDIFQHIIGRSRAIKASMEQAVQVMETDLNVLILGESGTGKELFAQAI 207 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 H+ + PFV+VNC AI+ +L ++ LFG+ +G+FTG+ G FE A Sbjct: 208 HQG--------SRRNCGPFVSVNCAAISSTLADSILFGHAKGSFTGAATD-HTGFFEQAD 258 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GT+FLDEIG+M +Q ++LR ++E+++ RVG VD RVISAT+ N + ++ + Sbjct: 259 KGTIFLDEIGDMEADIQAKVLRAIQERKIRRVGEKHERSVDFRVISATNRNFADAIRSNQ 318 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL L LPPLRER DI LA FL +A + + + Sbjct: 319 FREDLYYRLEEFPLFLPPLRERPEDIPLLARHFLDEFASANNIEKLS----FTDEALAGS 374 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTPDLTP--------------------QFMQLLL 479 Y WPGNIREL+N ++R A+ + L P + Sbjct: 375 KEYHWPGNIRELKNAVQRAAVTRKGDEVDSLRPILKHGNGSTAGHPASALAGSAAQRSAG 434 Query: 480 PELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 +S +A + NG+ T A LGI R T +R+L Sbjct: 435 HGPDMQSYSLEEHEREAILKAYKASNGNLTKTARMLGIGRATLYRKLDK 483 >UniRef50_B2JEB5 Two component, sigma54 specific, transcriptional regulator, Fis family n=68 Tax=Betaproteobacteria RepID=B2JEB5_BURP8 Length = 503 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 147/456 (32%), Positives = 213/456 (46%), Gaps = 25/456 (5%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSIGVVTY--QETIPALVAFQKTFNLRLDQRSYITE 138 +P +LI ALA +E LV + T Sbjct: 36 MPHVLIVDDDPSTRDALAAIIAEDGLTTATAGDLREARIQLVRQMPDVVFTDLKLPDGTG 95 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 D ++ ++ V+ + A A G Y + A+ Sbjct: 96 VDLFEDLDP-RSGVEFVVITGHATVESAVSALKMGAADYLVKPINMQRVKAILARLPRAG 154 Query: 199 HNTHDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 + R LR G MLG S M+QV I A ++A+V++ GE+GTGKE+AA Sbjct: 155 DLKAEIGTLRGELRRMGRFGLMLGNSAVMQQVYDQISRVAPTAASVMLVGESGTGKEVAA 214 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 Q +H+ ++ H F+AVNCGAI+ +L+E+E+FG+E GAFTG+ R + G FE Sbjct: 215 QTLHQ--------LSLRRKHAFLAVNCGAISPNLIESEMFGHERGAFTGADRQHK-GYFE 265 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 A+GGTLFLDEI EMP+ LQ +LLRVLE RVG + + DVR+I+AT+ + E+ + Sbjct: 266 RANGGTLFLDEITEMPIELQVKLLRVLETGMFMRVGTTKEIETDVRLIAATNRDPEQAVL 325 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 +G+ R DL++RL++ + LPPLRER D+ LA+SFL + A Sbjct: 326 EGKLRLDLYHRLNVFPISLPPLRERGKDVELLAQSFLDELNEQHGTK-----KHFPPAVR 380 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVE-PTPDLTPQFMQLLLPELARE-----SAKTP 490 +LL Y WPGN+REL+N ++R + + + P + L P Sbjct: 381 EMLLSYPWPGNVRELKNYVQRAHIMSGTDSDSTATVPLQISLSKPTAGTAITIPFGTSLA 440 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 LE+ G KT AA LGIS T + RL Sbjct: 441 EADRQLILATLEQCGGVKTRAAEILGISLKTLYNRL 476 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 116/312 (37%), Positives = 179/312 (57%), Gaps = 14/312 (4%) Query: 218 MLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHP 277 ++ +S M V A ++A VL+EGE+GTGK + A+ IH + ++ P Sbjct: 229 LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQ--------SSRRDKP 280 Query: 278 FVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 337 FV +NC AI ++LLE+ELFGY +GAFTG+ + + G E+A GGTLFLDEIGE+P LQ+ Sbjct: 281 FVKINCAAIPDNLLESELFGYVKGAFTGAVKD-KPGKVELADGGTLFLDEIGELPTYLQS 339 Query: 338 RLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPP 397 +LL +++EKE R+G + VDVR+I+AT+ +L + +++G+FR DL+YRL ++ +++P Sbjct: 340 KLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPA 399 Query: 398 LRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMER 457 LRER DI L F+ + + ++ + +LL+YD+PGNIREL N++ER Sbjct: 400 LRERKEDIPFLINYFIDLYSKQYNKH----IKGISPEAVRLLLNYDYPGNIRELENIIER 455 Query: 458 LALFLSVEPTP-DLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLG 516 + + P + L + + LE N +K+ AA L Sbjct: 456 AVILAKGKFIEVSDLPDEIVYNTKILTQNDLDEEIDEKQKILRVLESVNWNKSKAAKILN 515 Query: 517 ISRTTFWRRLKS 528 I R T WR+LK Sbjct: 516 IDRVTLWRKLKK 527 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 151/477 (31%), Positives = 235/477 (49%), Gaps = 38/477 (7%) Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGY---DVLQALAKAGKLTSSIGVVTYQETIPALVA 121 ++ AG+N + +L + S ++Q++++ + V E Sbjct: 190 MVVAGANAIENQLQLHRVNTKLYASYKYSDTIIQSMSEGL-----VIVDPAGEITKINQV 244 Query: 122 FQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTG---IFIYS 178 + + + N + I +E + G F S Sbjct: 245 GARILGVSAREAIG------LHISKMFGDNAPVLDLLRTGIAYENKEVMLDGGQRAFYCS 298 Query: 179 AATVRQAFSDALDMTRMSLRHNTHDA---TRNALRTRYVLGDMLGQSPQMEQVRQTILLY 235 A +R + + + ++ R RY +M+G S M++ R Sbjct: 299 ATLLRDDYGQMIGAVSVLRPRSSSKRSRCLPTTQRARYSFDEMIGDSDAMKKTRHMAERA 358 Query: 236 ARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 295 +RS + VLI+GE+GTGKEL AQ IH + PFVAVNC AI E+LLE+EL Sbjct: 359 SRSLSTVLIQGESGTGKELIAQGIHNA--------SSRHGQPFVAVNCAAITETLLESEL 410 Query: 296 FGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ 355 FGYEEG+FTG+++GG+ G E+A+GGTLFLDEIG+MPL +Q +LLR+L+E+ + RVG + Sbjct: 411 FGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIGDMPLQMQVKLLRMLQERRICRVGSSE 470 Query: 356 PVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKV 415 + +DVR+I+ATH NL++ +Q+G FR+DL+YRL++L + +PPLRER+ D+ LA+ + Sbjct: 471 EISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLNVLPITIPPLRERMDDLPALAKFLVTK 530 Query: 416 SLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVE-----PTPDL 470 A ++A YDWPGNIREL N++ER + DL Sbjct: 531 LSGRFGKEPVAISSLFMRAC----QSYDWPGNIRELENVIERAMNMVDDGDALTAEMIDL 586 Query: 471 TPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 P + + + +ALE G+ A++ LGISR T +R++K Sbjct: 587 DPVELPAD-HAIPDGVRPLKEVEMEMVVRALEMSRGNIVHASSLLGISRNTIYRKIK 642 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 494 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 143/453 (31%), Positives = 208/453 (45%), Gaps = 23/453 (5%) Query: 84 ILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDA 141 ILI + AL++ + + + L F L + + Sbjct: 7 ILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLDGIRM 66 Query: 142 RGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFS--DALDMTRMSLRH 199 + + T V+ A A EA G + Y + + + Sbjct: 67 MEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVERARLL 126 Query: 200 NTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAI 259 + R LR R G ++ P M +V + + A S A+VLI GETGTGKEL A+ I Sbjct: 127 QENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELIAEMI 186 Query: 260 HREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 319 HR + P V +NC A++ESLLE+ELFG+E GAFTG+ G R G FE A Sbjct: 187 HRA--------SPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAV-GRREGRFEQAS 237 Query: 320 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGR 379 GGTLFLDE+ E+PL Q +LLR L+E+ RVGG++ + VDVR+++A++ +L + + +G Sbjct: 238 GGTLFLDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGV 297 Query: 380 FRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVL 439 FR DL+YRL+++ L++PPLRER +DI LA FL + + + L Sbjct: 298 FREDLYYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKR----IEGFTDEALSAL 353 Query: 440 LHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTP-----APR 493 Y +PGN+REL N +ER A+ P M E + P Sbjct: 354 TSYSFPGNVRELENAIERAAVLCDGARIELRHLPAQMSSEPAESVDAMPRVPGSTIYDLE 413 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 + LE G + AA LGIS +L Sbjct: 414 RYAILRTLEACKGSTSKAATILGISPRKIQYKL 446 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 137/501 (27%), Positives = 218/501 (43%), Gaps = 57/501 (11%) Query: 70 SNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFN 127 + + L R ++ IL V L +G E + L Sbjct: 29 AGTSRLSVRAAMATILYVDDEVAVGLILEDTLAQAGHTPVGARNVPEALQVLERGGIDLI 88 Query: 128 LRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVR--QA 185 + + +T + + + ++ + A + G Y VR Q Sbjct: 89 ISDYRMPGLTGLEFIQLLTREGYDIPLIMLTGHASIEHAVTSIKAGAIDYITKPVRPQQL 148 Query: 186 FSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIE 245 ++ R + ++G SP + ++ QT+ + A + A VL++ Sbjct: 149 ELAVDQALEFVRLRRENETLRKEVMQFRNERQIIGDSPAIRRILQTVSMAAPTRATVLLQ 208 Query: 246 GETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTG 305 GE+GTGKEL A+AIH + ++ PF+ +NC A+ E L+E+ LFG+E+GAFTG Sbjct: 209 GESGTGKELFARAIHDQ--------SERRDKPFIKLNCAALPEGLVESALFGHEKGAFTG 260 Query: 306 SRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 365 + + G FE A+ GTL LDEI EM L LQ +LLRVL+E+E RVGG P+ VDVR+++ Sbjct: 261 AIKRV-EGAFERANRGTLLLDEISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRIVA 319 Query: 366 ATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFS 425 T+ +L + G FR+DL+YRLS + + +PPLR+R D+ LA F + A + Sbjct: 320 TTNRDLAMEADHGTFRQDLYYRLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKK-- 377 Query: 426 AALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPT------------------ 467 + Q + L Y WPGNIREL++++ER + Sbjct: 378 --IEGLSQDALESLQQYPWPGNIRELQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGA 435 Query: 468 PDLTPQFMQLLLPEL----------------------ARESAKTPAPRLLTPQQALEKFN 505 P++ P+ + + A S + Q AL + Sbjct: 436 PNMRPRAIATPGAQPVLAVSGAAAAPGSMNTPPNGGIALSSLNVADAERVLIQHALAAAD 495 Query: 506 GDKTAAANYLGISRTTFWRRL 526 ++T AA+ LGIS T +L Sbjct: 496 NNRTKAADMLGISVRTLRNKL 516 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 127/338 (37%), Positives = 187/338 (55%), Gaps = 17/338 (5%) Query: 192 MTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTG 251 + R L + + M+G+ +M+ + + I A + VLI+GE+GTG Sbjct: 400 IRRAILHQEEIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVAPTDVTVLIQGESGTG 459 Query: 252 KELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGR 311 KEL A+AIH AR ++ +PFV +NC A +LLE+ELFG+E+GAFTG+ R R Sbjct: 460 KELVAKAIH--------ARSSRRDNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQ-R 510 Query: 312 AGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNL 371 G FE A GGT+FLDEI E+ L Q +LLRVL+ ++ R+GG + + VDVR+++AT+ +L Sbjct: 511 PGRFEQARGGTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDL 570 Query: 372 EEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQG 431 E+++ GRFR DL+YRL ++ + LPPLRER D LA FL+ A + + Sbjct: 571 LEEVKAGRFREDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRIN----EI 626 Query: 432 LQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTP-DLTPQFMQLLLPELARESAKTP 490 ++ LL Y WPGN+REL N+ME+ + E + P +Q P + Sbjct: 627 SSSAMRALLDYSWPGNVRELENVMEQAVVLCKGETIALEDLPDKLQGARPARRK---TIE 683 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 + LE +K AA LGI R+T + +LK Sbjct: 684 DQEKNLLLETLEACGWNKKMAAERLGIGRSTLYAKLKK 721 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 129/408 (31%), Positives = 206/408 (50%), Gaps = 19/408 (4%) Query: 82 PVILIKPSGYDVLQALAKAGKLTSSIGV--VTYQETIPALVAFQ-KTFNLRLDQRSYITE 138 PVIL+ +V +L++ S V + +E + + + ++ Sbjct: 7 PVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVRMGGMSG 66 Query: 139 EDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLR 198 +A I + ++ A A EA G F Y A AL + Sbjct: 67 LEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAENALKAH 126 Query: 199 HNTHDA--TRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAA 256 H+ A + + ++G SP M+ V + + S V+I GE+GTGKEL A Sbjct: 127 HDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGTGKELVA 186 Query: 257 QAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 316 ++I + + F+AVNC AI ++L+E+ELFG+E+G+FTG+ G R G FE Sbjct: 187 RSI--------WKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGAT-GQRIGKFE 237 Query: 317 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQ 376 + GT+FLDEIG+M L QT++LRVL++ E+ RVGG + VDVR+I+AT+ +LE ++ Sbjct: 238 LCDRGTIFLDEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVK 297 Query: 377 QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASE 436 FR DL+YRL+++R+++PPLRER DI + + L+ + A + Sbjct: 298 AKTFREDLYYRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGK----VSPEAM 353 Query: 437 TVLLHYDWPGNIRELRNMMERLALFLSVEPT-PDLTPQFMQLLLPELA 483 +L +DWPGN+REL N++ R A+ + P P ++ +P LA Sbjct: 354 NILARHDWPGNVRELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLA 401 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%) Query: 473 QFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 F+ L A + +G+ +A+ LGI+R T +RL+ Sbjct: 461 DFLHHELTITADIEPILKRLEREMIARVYRATDGNIAKSADLLGITRPTLKKRLE 515 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 135/350 (38%), Positives = 194/350 (55%), Gaps = 30/350 (8%) Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + L + +GD++ QS ME + Q + + A+S + VLI GETGTGKE+ Sbjct: 324 QESLQQENHQLSEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A+AIH+ ++ P V +NC AI SLLE+ELFG+++GAFTG+ R G Sbjct: 384 IARAIHQ--------LSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHR-GR 434 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FEIA GGTLFLDEIG++PL LQ +LLRVL+E+E+ R+GG + +PV+VRVI+AT+ +L + Sbjct: 435 FEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQM 494 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 ++ +FR DLFYRL++ L+LPPLR+R DI LA+ F + ++ A+ Sbjct: 495 VEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNR----AIDAIPTE 550 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESA------- 487 + L+ +DWPGN+REL N++ER L LLP L +SA Sbjct: 551 ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQ 610 Query: 488 -------KTPAPRLLTPQQALEKFNGDKT---AAANYLGISRTTFWRRLK 527 + Q L + NG AA LG+ RTT R++ Sbjct: 611 LLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQ 660 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 143/504 (28%), Positives = 215/504 (42%), Gaps = 74/504 (14%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK---TFNLRLDQRSYITEED 140 IL+ V L +A V + T P + F + + + D Sbjct: 9 ILVADDDQAVRFVLEQALSRAGY-KVHAFGNTQPLVNHFNQYGGDLIITDVVMPGGSGLD 67 Query: 141 ARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + + V+ A A +A G F Y A L + + Sbjct: 68 MVQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRALQKQEE 127 Query: 201 THDATRNALRTR------------YVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGET 248 + G ++G S M+ + TI + S VLI GE+ Sbjct: 128 RVRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMTVLIHGES 187 Query: 249 GTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRR 308 GTGKEL A+A+H A ++ PF A+N AI L+E+ELFG+E+GAFTG+ Sbjct: 188 GTGKELVARAVH--------AYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAV- 238 Query: 309 GGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 368 R G F+ A GGTLFLDEIG+MP+ QTRLLRVL+E T VG + DVR+I+ATH Sbjct: 239 SRRPGHFQKAEGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATH 298 Query: 369 CNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAAL 428 +L + +GRFR DLFYRL+++ L +P LR R DI L++ FL + A Sbjct: 299 QDLPTAISEGRFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTS----KELKVAT 354 Query: 429 RQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAK 488 ++ Q++ L+ YDWPGN+REL N++ RL + + + + + +P+LAR Sbjct: 355 KRLTQSAMEKLVAYDWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMPKLARNDLS 414 Query: 489 ---------------------------------------------TPAPRLLTPQQALEK 503 + + L + Sbjct: 415 GHEPQEERSTESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQ 474 Query: 504 FNGDKTAAANYLGISRTTFWRRLK 527 G++ AA LGI+R T ++++ Sbjct: 475 TRGNRVKAAQILGINRNTLRKKMR 498 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 149/454 (32%), Positives = 238/454 (52%), Gaps = 36/454 (7%) Query: 89 SGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQIN-- 146 +L +L + + + ++ + A ++ ++ T D R +N Sbjct: 36 DAQAILDSLEE-----GVVAIGLDKKILYMNRAAREIL---KNREDSPTPSDCRKVVNSS 87 Query: 147 --ELKANGTEAVVGAGLI----TDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN 200 + + + V I L + G + + A ++ + + + Sbjct: 88 ECQARCVLAKTVETGEPIRNMEISLVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDIS 147 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 A + L+ RY G ++G+S +M+++ + + A+S + VLIEGE+GTGKEL A A+H Sbjct: 148 QIVALKEELKGRYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALH 207 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 ++ PFV +NC A++E +LE+ELFG+ +GAFTG+ + R G FE+A G Sbjct: 208 E--------NSPRREGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQS-RPGRFELASG 258 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GTLFLDEIGE+ +Q +LLRVL+E+E RVGG + V VDVRVI+AT+ +L++ M++G F Sbjct: 259 GTLFLDEIGEISPSMQVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSF 318 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLL 440 R+DL+YRL ++ + LPPLRER D+ L +SF++ A L ++ + VLL Sbjct: 319 RKDLYYRLRVIPVTLPPLRERQGDLPLLIQSFIERYNAELGK----NIQGLTSEAMKVLL 374 Query: 441 HYDWPGNIRELRNMMERLALFLSVEPTP------DLTPQFMQLLLPELA-RESAKTPAPR 493 +Y +PGNIREL+N++E AL + DL P Q ELA E Sbjct: 375 NYHYPGNIRELQNIIEHAALLCNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVE 434 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 + A+ + G+ + A L + R+T WRRLK Sbjct: 435 KELIRLAMAESGGNVSEVARKLSMGRSTLWRRLK 468 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 140/459 (30%), Positives = 204/459 (44%), Gaps = 26/459 (5%) Query: 81 VPVILIKPSGYDVLQALAKAGKLTSSI-GVVTYQETIPALVAFQKTFNLRLDQRSYITEE 139 + IL+ + L + + + L L + + Sbjct: 1 MARILVVDDDPLAQRVLVRLLCPAHDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGI 60 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRH 199 + + EL V+ A EA G Y + + R Sbjct: 61 ELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRR 120 Query: 200 NTHDATRNALRTRYVLGDMLGQSP--QMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 + SP +M + + AR+ + VL++GETG GKE+ A+ Sbjct: 121 LLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVAR 180 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 +H+ + FV++NCGA+ E+LLE+ELFG+E GAFTG+ RAG FE Sbjct: 181 LVHQW--------SPRAGRAFVSINCGALPETLLESELFGHERGAFTGAM-ARRAGYFEA 231 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGT+ LDEIG Q RLLRVL+E+ V RVGG P+ VDVRVI+AT+ +LE + Sbjct: 232 ADGGTILLDEIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGE 291 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR+DL+YRL ++ L +PPLRER D+ PLAE FL+ + A+R Sbjct: 292 GRFRKDLYYRLGVVTLVVPPLRERREDVGPLAEHFLRKY-----RHVNPAVRGVSPEGLA 346 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTP---------DLTPQFMQLLLPELARESAK 488 L+ YD+PGN+REL N++ER + + E E Sbjct: 347 KLVAYDYPGNVRELENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVA 406 Query: 489 TPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 ++ LE+ G + AA LGI ++T WR+LK Sbjct: 407 IDDAEREHIRRVLERCGGRRGEAARLLGIDKSTLWRKLK 445 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 143/451 (31%), Positives = 219/451 (48%), Gaps = 59/451 (13%) Query: 109 VVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA--NGTEAVVGAGLIT--- 163 +V + + + + ++ I + K N ++ A Sbjct: 40 IVHTNSSAEQIFERSQIIMIGKHVTEFVQSASLLQYIKQGKPATNLAVCIMSAKGTRLEF 99 Query: 164 -----DLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDM 218 L A + G ++ + + TR+ L D+ Sbjct: 100 SCRLHPLLVNAQVEGAILFLTKPILL----------------QEQEQSSRYGTRFSLDDV 143 Query: 219 LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPF 278 +G SP + +++ ++ A+S + VLI GE+GTGKE+ AQ+IHR + PF Sbjct: 144 IGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHR--------LSHRNKGPF 195 Query: 279 VAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTR 338 VA+NC AI E+LLE+ELFGYEEGAFTG+++GG+ G FE+A GGTLFLDEIG+MPL LQ + Sbjct: 196 VAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQAK 255 Query: 339 LLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPL 398 LLRVL+E+ + RVGG + + VDVR+I+ATH +LE + +FR DL++RL+++ L +PPL Sbjct: 256 LLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVPPL 315 Query: 399 RERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERL 458 RER D+ L + ++ L ++ + + Y WPGNIREL NM+E + Sbjct: 316 RERKEDLYELIQYYMYKFCKRLGKE----PKRFSSQALKKIFDYHWPGNIRELENMVEYI 371 Query: 459 ALFLSVE-PTPDLTPQFMQ-----------------LLLPELARESAKTPAPRLLTPQQA 500 + T P ++ + L + K QA Sbjct: 372 VNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINEVEEQLIIQA 431 Query: 501 LEKFNGD---KTAAANYLGISRTTFWRRLKS 528 L++F K AA LGIS T +R+L+ Sbjct: 432 LQRFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_D2L4T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4T0_9DELT Length = 461 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 134/461 (29%), Positives = 205/461 (44%), Gaps = 30/461 (6%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI--GVVTYQETIPALVAFQKTFNLRLDQRSYIT---- 137 +LI D+ + L +E + A Sbjct: 4 LLIVDDNGDIRRQLKWGLSKAPYALHFATHVEEALQVFQAVTPGVVTLDLGLPPHPEDAS 63 Query: 138 -EEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMS 196 Q+ + + V+ + A A G + + + + Sbjct: 64 QGLACLEQMIAARPSTKVIVITGFDGQENARRAVELGAYDFFRKPLDLGELKVMINRAFH 123 Query: 197 LRHNTH----DATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGK 252 L + + R ++G P M V I A S A VL+ GE+GTGK Sbjct: 124 LLEIERVAPAETPKKPAAPRLR-HGIVGDCPAMRDVYAMIDKVAASDAPVLVHGESGTGK 182 Query: 253 ELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRA 312 EL A AIH+ ++ P V++NCGAI E+LLE+E FG+E GAFTG+ + Sbjct: 183 ELVAMAIHQA--------SPRRQQPLVSINCGAIPENLLESEFFGHERGAFTGATNTVK- 233 Query: 313 GLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLE 372 G E A GTLFLDEIGE+P+ LQ +LLR L++ RVGG + + V+VRV++AT+ N++ Sbjct: 234 GKVEYAENGTLFLDEIGELPVNLQVKLLRFLQDMRFQRVGGRKTLEVNVRVLAATNVNIQ 293 Query: 373 EDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGL 432 E M+ G+FR DL+YR+ ++ + LPPLR+R D++ LA FL++ ++ Sbjct: 294 EAMRLGQFREDLYYRIGVVGIHLPPLRDRGEDVVLLANHFLEIH----GKQLPKKIQGFS 349 Query: 433 QASETVLLHYDWPGNIRELRNMMERLALFLSV-EPTPDLTPQFMQLLLPELARESAKTPA 491 + + +Y WPGN+REL N + R + + TP + P AR Sbjct: 350 PEAMEAIRNYPWPGNVRELENKVRRAIILVEGSRITPQSLGLAGEASSPGPARAETTLRE 409 Query: 492 ----PRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 QAL +F G+ A+ LG+SR TF+ L+ Sbjct: 410 ARTQLERQMMLQALRRFEGNIVKASEALGVSRPTFYDLLRK 450 >UniRef50_A6C0D3 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0D3_9PLAN Length = 462 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 134/429 (31%), Positives = 209/429 (48%), Gaps = 21/429 (4%) Query: 107 IGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLA 166 I V Q + + L + K +V + D A Sbjct: 32 ITVSQEQLAVHQIEQ-SVDLVLIDLDQGDQDALQQLRYWKNHKPETPCILVSSSDNIDTA 90 Query: 167 EEAGMTGIFIYSAATVR--QAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQ 224 A G Y V + + R + + ++ +++GQS Sbjct: 91 VAAMKQGAADYLRKPVNSQKLIQSVITCMRSTRNAAPAVSASQHRPSQRGFENIVGQSGA 150 Query: 225 MEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 284 M+++ + A++ + VLI GE+GTGKEL A+AIHR + + PFV VN Sbjct: 151 MQEIFEDARRVAQTDSTVLITGESGTGKELIAEAIHR--------NSPRAAEPFVTVNMA 202 Query: 285 AIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 344 A+ E L+E+ELFG+ +G+FTG+ R G FE AH GTLF+DEIG+ L Q +LLRVLE Sbjct: 203 AVPEHLVESELFGHTKGSFTGATES-RRGRFEAAHHGTLFIDEIGDFKLESQAKLLRVLE 261 Query: 345 EKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVAD 404 +T +G +Q V+VRV++AT +LE+ +++GRFR DL+YRL+++ L+LPPLRER D Sbjct: 262 NHTITPIGSNQDRHVNVRVVAATSHHLEKLVEKGRFREDLYYRLNVINLKLPPLRERNED 321 Query: 405 ILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL-S 463 I L +SF+ + + L+++ WPGN+R+LRN +E + + S Sbjct: 322 IALLVDSFMNQICQQIQRER----PELSAELHQYLVNHTWPGNVRQLRNCLESMVVLSKS 377 Query: 464 VEPTPDLTPQFMQLLLPE----LARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISR 519 T D P ++ + E + QQ L + +G++T +A LG+S Sbjct: 378 GRLTLDDLPDMLRNGEGVHDGIVIPEGIRLEELERTAIQQTLSRNHGNRTHSAKSLGMSV 437 Query: 520 TTFWRRLKS 528 T R+LK+ Sbjct: 438 RTLQRKLKA 446 >UniRef50_A8RUM4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUM4_9CLOT Length = 625 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 160/540 (29%), Positives = 247/540 (45%), Gaps = 52/540 (9%) Query: 17 VSVTRLFELFRDISLEFDH-LANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYL 75 + + + I+ D A I L + + K+ +E C I+ G N Sbjct: 103 IGIIAAGNMLDGITELSDLSEAPIRTFVLTPDWNNEMLVKRAVSEGCKVIL-GGVNTCRY 161 Query: 76 KSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY 135 + V ++I+ S AL+ + S +++ + Q ++ D Sbjct: 162 AAENHVSFMMIQTSQEAFWNALSDVKRTWS-----IFRKEQEKALRLQALLDISHDGILL 216 Query: 136 ITEEDARGQINE-----LKANGTEAVVGA-----------GLITDLAEEAGMTGIFIYSA 179 I + +N L +G V A + G + + Sbjct: 217 IDPDFKLTAMNRKAQSVLGIDGEHLPVDALSLGGELKDVLAGDEEYVNRLVQYGSNMLNV 276 Query: 180 ATVRQAFS----------DALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVR 229 + A+ + + RY D+ G+SP M Sbjct: 277 SKNVLKIQSSICGYVVNVQAVKEIQSMEHDIRKRICKRGHIARYRFDDITGESPVMISTV 336 Query: 230 QTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES 289 +T Y+R+S+ +L+ G++GTGKE+ AQ+IH + ++ PFVAVNC AI E Sbjct: 337 ETARRYSRTSSNILLIGQSGTGKEMFAQSIHND--------SQRRRMPFVAVNCAAIPEQ 388 Query: 290 LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT 349 LLE+ELFGY GAFTG+ R G+AGLFE+AH GTLFLDEIGE+ LPLQ +LLRVL+E+E+ Sbjct: 389 LLESELFGYVPGAFTGAHRDGKAGLFELAHKGTLFLDEIGEISLPLQAKLLRVLQEREIM 448 Query: 350 RVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERVADILPLA 409 RVGG +PVD+R+++AT+ NLE+ + +FR DL YRL +LR+ +P L +R DI LA Sbjct: 449 RVGGDSVIPVDIRILAATNQNLEQLAAERQFREDLLYRLDVLRINIPSLNQRREDISLLA 508 Query: 410 ESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD 469 +S++K + + + ++ L DWPGN+R+L N ERLA+ + Sbjct: 509 DSYMKRAFPDI---------RITDEAKAYLEQMDWPGNVRQLFNFCERLAVLCNGFAVDA 559 Query: 470 LTPQ--FMQLLLPELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLK 527 +Q +P + L + K A LGISR+T WR+L+ Sbjct: 560 DLVAAVSLQGGIPLGTGSVLSDEEDEQRIITKTLASCHYHKGNTAKALGISRSTLWRKLR 619 Score = 41.6 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 48/162 (29%), Gaps = 5/162 (3%) Query: 12 PVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANER--CDAIIAAG 69 + V E I + + + + V + + + D ++ G Sbjct: 3 KIALAVPYKGFIENAYQIFRQHNEFYRAVDQENYEMEEVIVTSENVNQIKIEADIVLTRG 62 Query: 70 SNGAYLKS-RLSVPVILIKPSGYDVLQALAKAGKLTS--SIGVVTYQETIPALVAFQKTF 126 L S ++PV+ I D+L+ + + IG++ + + Sbjct: 63 LLAEILASLSKNIPVVEITVPAADILRTIRNCVEHYGKQKIGIIAAGNMLDGITELSDLS 122 Query: 127 NLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEE 168 + + + + + G + ++G A E Sbjct: 123 EAPIRTFVLTPDWNNEMLVKRAVSEGCKVILGGVNTCRYAAE 164 >UniRef50_D0LHR5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHR5_HALO1 Length = 488 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 143/483 (29%), Positives = 220/483 (45%), Gaps = 48/483 (9%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSI-GVVTYQETIPALVAFQKTFNLRLDQRSYITEEDAR 142 +L+ + + + +A + G + E I + L ++ D Sbjct: 7 VLVVDAEPQIHRLIALLLGDGYQVDGAASAAEAIARVHHTPYDAVLIDTDLPTMSGFDLL 66 Query: 143 GQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSLRHN 200 ++ +L + A A +A G Y TV + + + Sbjct: 67 RKLRKLAPELAVILTTAQATVQAAVKAIRIGALDYLRKTVSADELRAAVQRAADHATLAR 126 Query: 201 THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIH 260 R+ + L ++G SP M Q+ + A S A VLI GE+GTGKEL ++ +H Sbjct: 127 EVRRLRSEVDRARGLDHLIGDSPAMRQLVGLVERVAHSDATVLILGESGTGKELLSRTLH 186 Query: 261 REYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG 320 R + PFVA +C A+ SLLEAELFG+E+GAFTG+ + R GLF AH Sbjct: 187 RIG--------PRADRPFVAFDCSALTPSLLEAELFGHEKGAFTGAGKA-RRGLFREAHQ 237 Query: 321 GTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRF 380 GT+FLDEIG++ +Q +LLRVL+E+E+ VGG Q V VDVRVI+AT+ +L+ + +G F Sbjct: 238 GTIFLDEIGDIAPSVQNKLLRVLQEREIKPVGGDQFVQVDVRVIAATNKDLKAQVARGAF 297 Query: 381 RRDLFYRLSILRLQLPPLRERVADILPLAESFLKV---SLAALSAPFSAALRQGLQASET 437 R DL++RL+++ +Q+PPLRER DI LA L+ + + + + + + T Sbjct: 298 REDLYWRLAVVPIQVPPLRERREDIALLAAHILERKRGAAKSFAGGETPYPTKISPGAMT 357 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE------------ 485 LL Y WPGNIREL N++ R A+ E + + + Sbjct: 358 RLLAYHWPGNIRELENVLSRAAILCDGEEIRADDLDMVGVPGDQATPPDSAGATEDDAPG 417 Query: 486 ---------------------SAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWR 524 A +ALE+ G + AA LGISR + + Sbjct: 418 PAKLGGLDVDASAGRPLKRLIDETVKAVERQAIAEALERCEGSPSKAARRLGISRASVYN 477 Query: 525 RLK 527 ++K Sbjct: 478 KIK 480 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 132/458 (28%), Positives = 207/458 (45%), Gaps = 31/458 (6%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSS--IGVVTYQETIPALVAFQKTFNLRLDQRS 134 S+ +LI + +ALA+ ++ I +E + L + L + Sbjct: 13 KGFSMSHVLIVEDDSVLREALAETMTISGHTYITAKDGKEALALLELHNPSVVLTDIRMD 72 Query: 135 YITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTR 194 + +I + + ++ A + A A G Y Sbjct: 73 KLDGNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQVLIEKIKQY 132 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 + + D D + + P+ + + L A+S V+I GE+GTGKE+ Sbjct: 133 IKTDLSEED------------NDPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKEV 180 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 A IH + PF+A+NC AI E +LEA LFGYE+GAFTG+ + G Sbjct: 181 LAHFIHDH--------SYRSKQPFIAINCAAIPEQMLEATLFGYEKGAFTGAYKST-PGK 231 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 FE A GGTL LDE+ EM L LQ +LLRVL+EKEV R+G ++ + +DVR+I+ T+ L+E+ Sbjct: 232 FEQAQGGTLLLDEVSEMSLGLQAKLLRVLQEKEVERIGSNKIINLDVRIIATTNRQLKEE 291 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 +Q GRFR DL+YRL++ LQ PLRER +DI+PLA ++ + Sbjct: 292 VQAGRFREDLYYRLNVFPLQWHPLRERTSDIIPLANYLIRKHCQH----KQPIVPVISPD 347 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARE----SAKTP 490 ++ +L Y WPGN REL N+++R + + + Q + S Sbjct: 348 AQKAMLSYSWPGNARELDNVIQRALVLQTQGIIEEEHLQITNSTTMPSEEKTKGTSKNLQ 407 Query: 491 APRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS 528 ++ L + G++ A LG+S T +L Sbjct: 408 IHEYELIEKTLLENEGNRQKVAALLGVSERTLRYKLAK 445 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 143/439 (32%), Positives = 215/439 (48%), Gaps = 32/439 (7%) Query: 104 TSSIGVVTYQETIPA-LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLI 162 I V + E I + F +L + Q S + Q ++ + + ++ + + Sbjct: 127 AEKIFSVKHNEIIGQPITRFFDYKDLEILQ-SLHDGKSIIAQFHQPRPDL-FVLINSNPV 184 Query: 163 TDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQS 222 E G + Q + H T M G+S Sbjct: 185 YCNDEII---GAVVSETDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDTSDPFLAMNGKS 241 Query: 223 PQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 282 P +++ Q + VLI GE+G GKE+ A+AIH + PF+++N Sbjct: 242 PVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAIHEA--------SETANAPFISIN 293 Query: 283 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRV 342 CGAI E+L E+ELFGYE GAF+G+ G+ G E+A GGTLFLDEIGEMPL +Q +LLRV Sbjct: 294 CGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRV 353 Query: 343 LEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILRLQLPPLRERV 402 L+E++ RVGG + + +D R+I+AT+ +L+E+M++G FR DL+YRL+++ L +PPLRER Sbjct: 354 LQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERR 413 Query: 403 ADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRELRNMMERLALFL 462 DI+ L +FL + P + LLHY+WPGNIRELRN++ERL +F Sbjct: 414 EDIIELTYTFLNDFSINYNRPIRDLPSSIMHE----LLHYNWPGNIRELRNVVERLVVFA 469 Query: 463 SVEPT-PDLTPQFMQLLLPELARES-------------AKTPAPRLLTPQQALEKFNGDK 508 + + P L S + ++AL +G+K Sbjct: 470 TDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDGNK 529 Query: 509 TAAANYLGISRTTFWRRLK 527 A LG++R T + RLK Sbjct: 530 LECAKQLGVTRATLYNRLK 548 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 140/453 (30%), Positives = 222/453 (49%), Gaps = 25/453 (5%) Query: 77 SRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVV-TYQETIPALVAFQKTFNLRLDQRSY 135 S ++L+ + + S+ + E + L + + + Sbjct: 2 SHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDE 61 Query: 136 ITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQ-AFSDALDMTR 194 + +I +++ ++ A A A G+F + V + A A+D Sbjct: 62 MDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDAL 121 Query: 195 MSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKEL 254 T + R A ++ +SP M ++ + L A+S +VLI G++GTGKE+ Sbjct: 122 EQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEI 172 Query: 255 AAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 314 AQAIH + S PF+A+NCGA+ E LLE+ELFG+ GAFTG+ R GL Sbjct: 173 FAQAIHNA--------SPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAV-SNREGL 223 Query: 315 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEED 374 F+ A GGTLFLDEIG+MP PLQ +LLRVL+E++V +G ++ + ++VR+ISATH +L + Sbjct: 224 FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKA 283 Query: 375 MQQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQA 434 M +G FR DL+YRL+++ L++P L ER DI LA L+ + +R Sbjct: 284 MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH----KPFVRAFSTD 339 Query: 435 SETVLLHYDWPGNIRELRNMMERLALFLSVEPTPD-LTPQFMQLLLPELARESAKTPAPR 493 + L+ WPGN+R+L N++E+ S D L Q ++ L Sbjct: 340 AMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFE 399 Query: 494 LLTPQQALEKFNGDKTAAANYLGISRTTFWRRL 526 L ++ L+ G+ T AA G +RT F++ L Sbjct: 400 LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLL 432 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 162/562 (28%), Positives = 245/562 (43%), Gaps = 69/562 (12%) Query: 5 PRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDA 64 + I V+ + + +I + E + E D Sbjct: 87 EQAKQYGTRIGVVAFPSMVMGIDCLGPI--LGVDIRQYIITDEFQAESRVLQAFREGADV 144 Query: 65 IIAAGSNGAYLKSRLSVPVILIKPSGYDVLQ----------------------------A 96 ++ G + P +LIK + Q A Sbjct: 145 VVGGVITGKSAQKHHQ-PYVLIKSGSEGIAQAAAEAKRIAAARELEKAKASLFRTVLDFA 203 Query: 97 LAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL----------DQRSYITEEDARGQIN 146 + + + L + ++ T D GQ+ Sbjct: 204 YDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPELGLEKVLTTGRDELGQLL 263 Query: 147 ELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATR 206 ++ +GT + I + G F DA ++ +M R R Sbjct: 264 KV--SGTRVLCNKVPIVVNGKPVGAVATF-----------QDAGNIQQMEARIRREIYAR 310 Query: 207 NALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFAR 266 + + D++G SPQ+ +A++ ++VLI GETGTGKE+ AQ+IH Sbjct: 311 GHV-ATFTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSIHNA---- 365 Query: 267 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLD 326 + + PFVA+NC A+ +LE+ELFGY GAFTG+ + G+ GLFE+AHGGT+FLD Sbjct: 366 ----SARANGPFVAINCAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLD 421 Query: 327 EIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFY 386 EI EM Q +LLRVL+EK+V R+G + +PVDVRVI+AT+ NL +++ +FR DL+Y Sbjct: 422 EIAEMDYVTQGKLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYY 481 Query: 387 RLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPG 446 RL++LRL+LPPLRER ADI+ AE FL+ AA + + A+ L + WPG Sbjct: 482 RLNVLRLKLPPLRERGADIIRYAEFFLEKHSAAQNRRLA-----FTPAALERLARHPWPG 536 Query: 447 NIRELRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNG 506 N+REL+N +ER+ M + E A +QAL G Sbjct: 537 NVRELQNTIERIVAVCRQPQVDAGLVAQMLEDDADSGIEVAA-ADSEKEQIRQALAIAKG 595 Query: 507 DKTAAANYLGISRTTFWRRLKS 528 + AA LG+SR+T WR++K Sbjct: 596 KQGEAARLLGVSRSTLWRKMKK 617 Score = 79.3 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 1/179 (0%) Query: 42 IQLGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQALAKA 100 I+ G A I +KL + + II+ G + +K L V ++ + +G+DV++ + +A Sbjct: 30 IERGLLSAGVRIARKLVEDGVEVIISRGGTASAIKDAGLPVTIVEVPITGFDVIRTVEQA 89 Query: 101 GKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG 160 + + IGVV + + + + + Q E A ++ + G + VVG Sbjct: 90 KQYGTRIGVVAFPSMVMGIDCLGPILGVDIRQYIITDEFQAESRVLQAFREGADVVVGGV 149 Query: 161 LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDML 219 + A++ + I S + + + A+ + ++ Sbjct: 150 ITGKSAQKHHQPYVLIKSGSEGIAQAAAEAKRIAAARELEKAKASLFRTVLDFAYDGII 208 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 126/485 (25%), Positives = 214/485 (44%), Gaps = 54/485 (11%) Query: 84 ILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQK----TFNLRLDQRSYITEE 139 +LI + + A + + + A + L ++ Sbjct: 10 VLIVDDDPTQRRLMQAAVERQGFRARLVESGDLALEEASDAKNGISVVLLDLIMPGLSGM 69 Query: 140 DARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATV--RQAFSDALDMTRMSL 197 + ++ E + + V+ A D +A G + + + ++S Sbjct: 70 ETLERLLERRPDLPVIVLTASGGIDTVVQAMRAGAVDFFVKPASPERIVVSLRNALKVSD 129 Query: 198 RHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQ 257 DM+ +P M QV + A+S+ +LI GE+G GKE+A+Q Sbjct: 130 LRGEVKRLSKKSEGTLGFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGKEVASQ 189 Query: 258 AIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI 317 I + + PF+ VNCGAI E+L+E+ LFG+E+GAFTG+ + G F Sbjct: 190 CI--------QSASERAGKPFITVNCGAIPENLVESILFGHEKGAFTGAHEK-KLGKFAE 240 Query: 318 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQ 377 A GGTLFLDE+GE+PL +Q +LLRVL+E EV VG +P VDVR+ISAT+ +L + + + Sbjct: 241 ADGGTLFLDEVGELPLDMQVKLLRVLQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSE 300 Query: 378 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASET 437 GRFR DL+YRL++ +++P LR+R D+ L + F++ A ++ + Sbjct: 301 GRFREDLYYRLNVFPIEMPSLRDRKEDLPALVDHFIRRFNAQEGM----SITGASLETMG 356 Query: 438 VLLHYDWPGNIRELRNMMERLALFLSVEPTPDLTPQFMQLLLP----------------- 480 ++ +DWPGN+R+L N + R + + + + L P Sbjct: 357 MIAAHDWPGNVRQLENSIFRAMILSEGDELQPVDFPHISGLTPNYEILKTPNNGASISDA 416 Query: 481 ------------------ELARESAKTPAPRLLTPQQALEKFNGDKTAAANYLGISRTTF 522 + E + Q A++ ++G + A LGI R+T Sbjct: 417 ATTATQLNSPLGGPVSIVDDNGELRPLESVERDLIQYAIDLYSGHMSQVARRLGIGRSTL 476 Query: 523 WRRLK 527 +R+++ Sbjct: 477 YRKVR 481 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.176 0.637 Lambda K H 0.267 0.0536 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,700,419,555 Number of Sequences: 3077464 Number of extensions: 222852193 Number of successful extensions: 616970 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 10609 Number of HSP's successfully gapped in prelim test: 9213 Number of HSP's that attempted gapping in prelim test: 569167 Number of HSP's gapped (non-prelim): 25209 length of query: 528 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 395 effective length of database: 631,093,644 effective search space: 249281989380 effective search space used: 249281989380 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 96 (41.2 bits)