414 d1rifa_ Probab=85.66   E-value=2.4  Score=21.52  Aligned_columns=114  Identities=11%

Q ss_pred             HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHCCHHHHHHHH--CCCCCCCCCCC
Q ss_conf             9999986057984999858988589999999973001223332002598599870019988998876--38676744587
Q batch____       229 RQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL--FGYEEGAFTGS  306 (528)
Q Consensus       229 ~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~iH~~s~~~~~~~~~r~~~pfv~inc~~~~~~l~eseL--fG~~~gaftga  306 (528)
                      ...+-..+......++.+++|+||+.+|-.+.....       .+...+.+.+-+..---..+..++  |+...+...+.
T Consensus       118 Q~~~i~~~l~~~~~ii~~~tGsGKT~~~~~~i~~~~-------~~~~~~~lii~p~~~L~~q~~~~~~~~~~~~~~~~~~  190 (282)
T d1rifa_         118 QKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYL-------ENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK  190 (282)
T ss_dssp             HHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHH-------HHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-------HCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             999999998479859993688813799999999997-------4279809999552899999999999860757742000


Q ss_pred             CCCCCCCHHHH----------------------CCCCEEEECCHHHCCHHHHHHHHHHHHCCCEE
Q ss_conf             55355682451----------------------67987998065889988999999998529676
Q batch____       307 RRGGRAGLFEI----------------------AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT  349 (528)
Q Consensus       307 ~~~~~~g~~~~----------------------a~~GTlfldeI~~l~~~~Q~~Ll~~l~~~~~~  349 (528)
                      ..++.......                      .+-+.+++||.+..+-..-..++..+....++
T Consensus       191 ~~~~~~~~~~~~~~~~iii~t~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~  255 (282)
T d1rifa_         191 IGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFK  255 (282)
T ss_dssp             CSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEE
T ss_pred             CCCCCCCHHCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCEE
T ss_conf             01675300011343578897399998878842312528998380027683389999822437859