BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (158 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P76062 Rac prophage repressor n=17 Tax=Escherichia coli...   270   8e-72
UniRef50_B4EVH7 Prophage repressor n=2 Tax=Proteus mirabilis Rep...   220   1e-56
UniRef50_Q9PG02 Phage-related repressor protein n=2 Tax=Xylella ...   141   8e-33
UniRef50_C1HWP1 Predicted protein n=10 Tax=Neisseria gonorrhoeae...   117   8e-26
UniRef50_A5W5W4 Putative phage repressor n=1 Tax=Pseudomonas put...   117   1e-25
UniRef50_C7HY20 Putative phage repressor n=1 Tax=Thiomonas inter...   115   4e-25
UniRef50_A6V3X6 Transcriptional regulator, Cro/CI family n=2 Tax...   115   6e-25

>UniRef50_P76062 Rac prophage repressor n=17 Tax=Escherichia coli RepID=RACR_ECOLI
          Length = 158

 Score =  270 bits (691), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
           MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR
Sbjct: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60

Query: 61  FFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPD 120
           FFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPD
Sbjct: 61  FFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPD 120

Query: 121 WVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT 158
           WVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT
Sbjct: 121 WVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT 158


>UniRef50_B4EVH7 Prophage repressor n=2 Tax=Proteus mirabilis RepID=B4EVH7_PROMH
          Length = 160

 Score =  220 bits (560), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/146 (60%), Positives = 108/146 (73%), Gaps = 5/146 (3%)

Query: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
           ML+GKDLGRAIEQAINKK++SGSVKSK E+ARHF V+ PSIYDWIKKGSISKDKLPELW 
Sbjct: 1   MLNGKDLGRAIEQAINKKLSSGSVKSKTEIARHFNVKLPSIYDWIKKGSISKDKLPELWS 60

Query: 61  FFSDVVGPEHWGLNEYPIPT-PTNSDTKSELLDINNL---YQAASDEIRAIVAFLLSGNA 116
           +FSDVVGPEHWGL E+ +P     S    +   +N+L   Y +AS E + I+ +LL  N 
Sbjct: 61  YFSDVVGPEHWGLKEFHLPVNKAESRCTHDEHQLNSLIHAYMSASAERKEIIKYLLLQNN 120

Query: 117 T-EPDWVDHDVRAYIAAMEMKVGKYL 141
           T EP WV+ D RAYI  +E +  ++L
Sbjct: 121 TKEPSWVNSDTRAYIITLERQASEWL 146


>UniRef50_Q9PG02 Phage-related repressor protein n=2 Tax=Xylella fastidiosa
           RepID=Q9PG02_XYLFA
          Length = 143

 Score =  141 bits (354), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 58/116 (50%), Positives = 71/116 (61%), Gaps = 13/116 (11%)

Query: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
           ML+G+ LGRAI+QA+  K   G   +K  +A HF V+ PS+Y WIK+G ISK+KLP LW 
Sbjct: 1   MLTGEQLGRAIKQAMQLK---GVTPTK--MAEHFGVKAPSVYGWIKEGRISKEKLPSLWS 55

Query: 61  FFSDVVGPEHWGLNEYP---IPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLS 113
           +FSDVVGP HWGL  +P   +P P    T     DI   Y AAS   RA V  LL 
Sbjct: 56  YFSDVVGPTHWGLEAWPSGGVPAPPMKGT-----DITEAYHAASAATRAAVDLLLL 106


>UniRef50_C1HWP1 Predicted protein n=10 Tax=Neisseria gonorrhoeae
          RepID=C1HWP1_NEIGO
          Length = 238

 Score =  117 bits (294), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          M SG+ LG+AI +AI +K  S     + EVA HF V+ PS+  WIK G I K  L +L  
Sbjct: 19 MFSGEQLGQAISEAIKRKNVS-----QKEVADHFGVKQPSVSGWIKNGRIDKKHLDKLID 73

Query: 61 FFSDVVGPEHWGLNEYPI 78
          +FSDVV P H+G+  + +
Sbjct: 74 YFSDVVTPSHFGIETFRV 91


>UniRef50_A5W5W4 Putative phage repressor n=1 Tax=Pseudomonas putida F1
          RepID=A5W5W4_PSEP1
          Length = 280

 Score =  117 bits (293), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 5/74 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          ML+G +LG AI+ A   K  S     K ++A  F+V+PPS+  W+K G I K KL ++  
Sbjct: 1  MLTGPELGAAIDAARIAKGVS-----KKQLADDFQVKPPSVQGWVKNGRIDKSKLMDVIA 55

Query: 61 FFSDVVGPEHWGLN 74
          +FSDVVGPEHWGL 
Sbjct: 56 YFSDVVGPEHWGLR 69


>UniRef50_C7HY20 Putative phage repressor n=1 Tax=Thiomonas intermedia K12
          RepID=C7HY20_THIIN
          Length = 224

 Score =  115 bits (288), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 5/75 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          ML+GK+LG AIE A  KK  S     K  +AR  +++PPS+ DWI  G ++K +L  L++
Sbjct: 1  MLTGKELGAAIEAARLKKGVS-----KVTLARAMEIKPPSVQDWIHHGRVAKSRLGALFQ 55

Query: 61 FFSDVVGPEHWGLNE 75
          +FSDVVGPEHWG+ E
Sbjct: 56 YFSDVVGPEHWGVRE 70


>UniRef50_A6V3X6 Transcriptional regulator, Cro/CI family n=2 Tax=Pseudomonas
          aeruginosa RepID=A6V3X6_PSEA7
          Length = 283

 Score =  115 bits (287), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 45/75 (60%), Gaps = 5/75 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          ML+G  LG AIE A   K       SK  +A  F V+PPS+  WI  G I K KL EL  
Sbjct: 1  MLTGPQLGAAIEAARLAKN-----MSKKALAEQFGVKPPSVQGWINTGRIDKAKLIELIS 55

Query: 61 FFSDVVGPEHWGLNE 75
          FFSDVVG EHWGL+E
Sbjct: 56 FFSDVVGAEHWGLSE 70


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P76062 Rac prophage repressor n=17 Tax=Escherichia coli...   268   5e-71
UniRef50_B4EVH7 Prophage repressor n=2 Tax=Proteus mirabilis Rep...   218   3e-56
UniRef50_Q9PG02 Phage-related repressor protein n=2 Tax=Xylella ...   141   8e-33
UniRef50_A5W5W4 Putative phage repressor n=1 Tax=Pseudomonas put...   120   1e-26
UniRef50_C1HWP1 Predicted protein n=10 Tax=Neisseria gonorrhoeae...   118   5e-26
UniRef50_C7HY20 Putative phage repressor n=1 Tax=Thiomonas inter...   117   1e-25
UniRef50_A6V3X6 Transcriptional regulator, Cro/CI family n=2 Tax...   117   2e-25

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P76062 Rac prophage repressor n=17 Tax=Escherichia coli RepID=RACR_ECOLI
          Length = 158

 Score =  268 bits (684), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
           MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR
Sbjct: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60

Query: 61  FFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPD 120
           FFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPD
Sbjct: 61  FFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLSGNATEPD 120

Query: 121 WVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT 158
           WVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT
Sbjct: 121 WVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT 158


>UniRef50_B4EVH7 Prophage repressor n=2 Tax=Proteus mirabilis RepID=B4EVH7_PROMH
          Length = 160

 Score =  218 bits (556), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/146 (60%), Positives = 108/146 (73%), Gaps = 5/146 (3%)

Query: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
           ML+GKDLGRAIEQAINKK++SGSVKSK E+ARHF V+ PSIYDWIKKGSISKDKLPELW 
Sbjct: 1   MLNGKDLGRAIEQAINKKLSSGSVKSKTEIARHFNVKLPSIYDWIKKGSISKDKLPELWS 60

Query: 61  FFSDVVGPEHWGLNEYPIPT-PTNSDTKSELLDINNL---YQAASDEIRAIVAFLLSGNA 116
           +FSDVVGPEHWGL E+ +P     S    +   +N+L   Y +AS E + I+ +LL  N 
Sbjct: 61  YFSDVVGPEHWGLKEFHLPVNKAESRCTHDEHQLNSLIHAYMSASAERKEIIKYLLLQNN 120

Query: 117 T-EPDWVDHDVRAYIAAMEMKVGKYL 141
           T EP WV+ D RAYI  +E +  ++L
Sbjct: 121 TKEPSWVNSDTRAYIITLERQASEWL 146


>UniRef50_Q9PG02 Phage-related repressor protein n=2 Tax=Xylella fastidiosa
           RepID=Q9PG02_XYLFA
          Length = 143

 Score =  141 bits (354), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 56/116 (48%), Positives = 70/116 (60%), Gaps = 13/116 (11%)

Query: 1   MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
           ML+G+ LGRAI+QA+  K  +       ++A HF V+ PS+Y WIK+G ISK+KLP LW 
Sbjct: 1   MLTGEQLGRAIKQAMQLKGVTP-----TKMAEHFGVKAPSVYGWIKEGRISKEKLPSLWS 55

Query: 61  FFSDVVGPEHWGLNEYP---IPTPTNSDTKSELLDINNLYQAASDEIRAIVAFLLS 113
           +FSDVVGP HWGL  +P   +P P    T     DI   Y AAS   RA V  LL 
Sbjct: 56  YFSDVVGPTHWGLEAWPSGGVPAPPMKGT-----DITEAYHAASAATRAAVDLLLL 106


>UniRef50_A5W5W4 Putative phage repressor n=1 Tax=Pseudomonas putida F1
          RepID=A5W5W4_PSEP1
          Length = 280

 Score =  120 bits (301), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 5/74 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          ML+G +LG AI+ A   K  S     K ++A  F+V+PPS+  W+K G I K KL ++  
Sbjct: 1  MLTGPELGAAIDAARIAKGVS-----KKQLADDFQVKPPSVQGWVKNGRIDKSKLMDVIA 55

Query: 61 FFSDVVGPEHWGLN 74
          +FSDVVGPEHWGL 
Sbjct: 56 YFSDVVGPEHWGLR 69


>UniRef50_C1HWP1 Predicted protein n=10 Tax=Neisseria gonorrhoeae
          RepID=C1HWP1_NEIGO
          Length = 238

 Score =  118 bits (296), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 5/78 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          M SG+ LG+AI +AI +K  S     + EVA HF V+ PS+  WIK G I K  L +L  
Sbjct: 19 MFSGEQLGQAISEAIKRKNVS-----QKEVADHFGVKQPSVSGWIKNGRIDKKHLDKLID 73

Query: 61 FFSDVVGPEHWGLNEYPI 78
          +FSDVV P H+G+  + +
Sbjct: 74 YFSDVVTPSHFGIETFRV 91


>UniRef50_C7HY20 Putative phage repressor n=1 Tax=Thiomonas intermedia K12
          RepID=C7HY20_THIIN
          Length = 224

 Score =  117 bits (293), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 5/75 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          ML+GK+LG AIE A  KK  S     K  +AR  +++PPS+ DWI  G ++K +L  L++
Sbjct: 1  MLTGKELGAAIEAARLKKGVS-----KVTLARAMEIKPPSVQDWIHHGRVAKSRLGALFQ 55

Query: 61 FFSDVVGPEHWGLNE 75
          +FSDVVGPEHWG+ E
Sbjct: 56 YFSDVVGPEHWGVRE 70


>UniRef50_A6V3X6 Transcriptional regulator, Cro/CI family n=2 Tax=Pseudomonas
          aeruginosa RepID=A6V3X6_PSEA7
          Length = 283

 Score =  117 bits (292), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 45/75 (60%), Gaps = 5/75 (6%)

Query: 1  MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDWIKKGSISKDKLPELWR 60
          ML+G  LG AIE A   K       SK  +A  F V+PPS+  WI  G I K KL EL  
Sbjct: 1  MLTGPQLGAAIEAARLAKN-----MSKKALAEQFGVKPPSVQGWINTGRIDKAKLIELIS 55

Query: 61 FFSDVVGPEHWGLNE 75
          FFSDVVG EHWGL+E
Sbjct: 56 FFSDVVGAEHWGLSE 70


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.305    0.123    0.335 

Lambda     K      H
   0.267   0.0378    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,054,850
Number of Sequences: 3077464
Number of extensions: 13149144
Number of successful extensions: 33869
Number of sequences better than 1.0e-01: 7
Number of HSP's better than  0.1 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33837
Number of HSP's gapped (non-prelim): 14
length of query: 158
length of database: 1,040,396,356
effective HSP length: 118
effective length of query: 40
effective length of database: 677,255,604
effective search space: 27090224160
effective search space used: 27090224160
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.5 bits)
S2: 87 (38.2 bits)
