05/01/2012 20:10:34 : INFO  : Run start: Thu Jan  5 20:10:33 GMT 2012
05/01/2012 20:10:40 : INFO  : Initialised job
05/01/2012 20:10:42 : INFO  : Renaming log file 'phyre2_20120105_201033.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/8ddc337b235d61fb/phyre_20120105_201033.log'
05/01/2012 20:10:43 : INFO  : Initialised job:
Sequence
>batch____
MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEPEALTLLAQQAFHDASF
MLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQR
VWTGGGDEETLSKGVYNTYIEDNLRYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKF
LCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAET
NLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQELLEEAQKLGLGAQFGGKYFAHDIRV
IRLPRHGASCPVGMGVSCSADRNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVK
VDLNRPMKEILAQLSQYPVSTRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIY
YAGPAKTPAGYPSGSLGPTTAGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGF
YLGSIGGPAAVLAQQSIKHLECVAYPELGMEAIWKIEVEDFPAFILVDDKGNDFFQQIVN
KQCANCTK

05/01/2012 20:10:44 : INFO  : Checked sequence
05/01/2012 20:10:47 : INFO  : Finding homologues with PSI-BLAST
05/01/2012 20:10:48 : INFO  : PSI-BLAST 3 iterations
05/01/2012 20:13:11 : INFO  : PSI-BLAST 5 iterations
05/01/2012 20:14:40 : INFO  : Finished PSI-BLAST
05/01/2012 20:14:42 : INFO  : Running Buildali to generate a3m file
05/01/2012 20:23:12 : INFO  : Converting to HMM
05/01/2012 20:23:17 : INFO  : Calibrating HMM
05/01/2012 20:23:36 : INFO  : Searching HMM database
05/01/2012 20:32:55 : INFO  : Finished buildali
05/01/2012 20:32:57 : INFO  : Predicting secondary structure
05/01/2012 20:33:05 : INFO  : Predicted secondary structure (PSI-Pred)
05/01/2012 20:33:06 : INFO  : Predicting Disordered regions
05/01/2012 20:33:10 : INFO  : Predicted Disorder (Disopred)
05/01/2012 20:33:12 : INFO  : Running memsat_svm check
05/01/2012 20:36:44 : INFO  : Running memsat_svm full
05/01/2012 20:45:11 : INFO  : Predicted Transmembrane (memsat_svm) ID '8ddc337b235d61fb'
05/01/2012 20:45:12 : INFO  : Initialising fold library search
05/01/2012 20:45:17 : INFO  : Initialised search input
05/01/2012 20:45:19 : INFO  : Building Ensemble models
05/01/2012 20:45:23 : INFO  : Building hh.d2isba1.model.1.pdb
05/01/2012 20:45:37 : INFO  : Building hh.c1k98A_.model.2.pdb
05/01/2012 20:45:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8ddc337b235d61fb/hh.c1k98A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8ddc337b235d61fb/c1k98A_.3.pdb
05/01/2012 20:45:52 : INFO  : Building d2isba1.1.pdb
05/01/2012 20:46:07 : INFO  : Building d1ed7a_.2.pdb
05/01/2012 20:46:22 : INFO  : Building c1k98A_.3.pdb
05/01/2012 20:46:38 : INFO  : Building c3fpnA_.4.pdb
05/01/2012 20:46:55 : INFO  : Building c2xmoB_.5.pdb
05/01/2012 20:47:11 : INFO  : Building d1ei5a2.6.pdb
05/01/2012 20:47:27 : INFO  : Building c3l07B_.7.pdb
05/01/2012 20:47:44 : INFO  : Building d3bula2.8.pdb
05/01/2012 20:48:00 : INFO  : Building c3p2oA_.9.pdb
05/01/2012 20:48:16 : INFO  : Building d12asa_.10.pdb
05/01/2012 20:48:35 : INFO  : Building c3p2oB_.11.pdb
05/01/2012 20:48:51 : INFO  : Building c2zoeA_.12.pdb
05/01/2012 20:49:06 : INFO  : Building c2d49A_.13.pdb
05/01/2012 20:49:20 : INFO  : Building c2c2xB_.14.pdb
05/01/2012 20:49:35 : INFO  : Building c2e0iD_.15.pdb
05/01/2012 20:49:51 : INFO  : Building d1a4ia2.16.pdb
05/01/2012 20:50:07 : INFO  : Building d1aiwa_.17.pdb
05/01/2012 20:50:23 : INFO  : Building d2piea1.18.pdb
05/01/2012 20:50:38 : INFO  : Building d1vkza2.19.pdb
05/01/2012 20:50:53 : INFO  : Building d1yqea1.20.pdb
05/01/2012 20:51:49 : INFO  : Finished HH model building
05/01/2012 20:51:51 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
05/01/2012 20:52:56 : INFO  : html domain output complete ID '8ddc337b235d61fb'
05/01/2012 21:08:56 : INFO  : Run end  : Thu Jan  5 21:08:55 GMT 2012
