306 c1vmaA_ Probab=96.95   E-value=0.005  Score=43.86  Aligned_columns=155  Identities=18%

Q ss_pred             HHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH-----------------------HHCCCCCCCCCCCEEEECEE
Q ss_conf             4321012320002456652146304675535788887-----------------------40432111245530232205
Q batch____       375 EAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYI-----------------------RSTKVASGEAGGITQHIGAY  431 (890)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~i~ghvdhgkt~l~d~~-----------------------~~~~~~~~e~~gitq~~~~~  431 (890)
                      ...............+|-||+++|--..||||.+-+|                       ...--...+.-|+....+.+
T Consensus        76 ~~~l~~~~~~~~~~~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~~~~~~  155 (294)
T c1vmaA_          76 LEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE  155 (294)
T ss_dssp             HHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST
T ss_pred             HHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCC
T ss_conf             98504321002357896699998068876024899999999967994899975876864799999999761982897488


Q ss_pred             EEE-------------CCCCEEEEEECCCCHHHHHHHHHHHHH------------CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             734-------------378638998678745689888755531------------5879999974678655679999999
Q batch____       432 HVE-------------TENGMITFLDTPGHAAFTSMRARGAQA------------TDIVVLVVAADDGVMPQTIEAIQHA  486 (890)
Q Consensus       432 ~~~-------------~~~~~~~~~dtpgh~~f~~~~~~g~~~------------~d~~~lvv~~~~g~~~qt~e~~~~~  486 (890)
                      .-.             ..+..+.||||||-..+......-...            .|..+||++|.-|  +.-.+.+...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~d~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~  233 (294)
T c1vmaA_         156 GADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIF  233 (294)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC--HHHHHHHHHH
T ss_conf             36989999999999997799899981888987857999999999999630356688539998114687--8999999999


Q ss_pred             HHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCEEEEECCC-CCCHHHH
Q ss_conf             964997899964357777899999999986588614308970079833678-9998899
Q batch____       487 KAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA-GTGIDEL  544 (890)
Q Consensus       487 ~~~~~~~iv~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa~~-g~~~~~l  544 (890)
                      ...=-+--+.++|+|- ...+-.+..-....+            .||+-.+ |+++++|
T Consensus       234 ~~~~~~~~iIlTKlDe-~~~~G~~l~~~~~~~------------~Pi~~i~~Gq~v~Dl  279 (294)
T c1vmaA_         234 KEAVNVTGIILTKLDG-TAKGGITLAIARELG------------IPIKFIGVGEKAEDL  279 (294)
T ss_dssp             HHHSCCCEEEEECGGG-CSCTTHHHHHHHHHC------------CCEEEEECSSSGGGE
T ss_pred             HHCCCCCEEEEECCCC-CCCHHHHHHHHHHHC------------CCEEEEECCCCCCCC
T ss_conf             6308997699974447-885579999999857------------988999659984554