313 c1nijA_ Probab=96.52   E-value=0.016  Score=39.51  Aligned_columns=149  Identities=16%

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEECEEEEECC--------------------------------
Q ss_conf             566521463046755357888874043211124553023220573437--------------------------------
Q batch____       389 PRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETE--------------------------------  436 (890)
Q Consensus       389 ~~~~~~~i~ghvdhgkt~l~d~~~~~~~~~~e~~gitq~~~~~~~~~~--------------------------------  436 (890)
                      .|-||.-|-|-...||||||..+... ......+=|....|...+...                                
T Consensus         1 ~~ipv~iitGfLGaGKTTll~~ll~~-~~~~~~avi~Nefg~~~iD~~ll~~~~~~v~~l~~GCiCC~~~~~~~~~l~~l   79 (317)
T c1nijA_           1 NPIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL   79 (317)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHS-CCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCEECCCHHHHHHHHHHH
T ss_conf             97618998089888988999999842-69973899971664442058898407972999779954213247789999999


Q ss_pred             ---------CCEEEEEECCCCHHHHHHHHH--------HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             ---------863899867874568988875--------553158799999746786556799999999649978999643
Q batch____       437 ---------NGMITFLDTPGHAAFTSMRAR--------GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNK  499 (890)
Q Consensus       437 ---------~~~~~~~dtpgh~~f~~~~~~--------g~~~~d~~~lvv~~~~g~~~qt~e~~~~~~~~~~~~iv~~nk  499 (890)
                               .....||.|+|-.....+...        .....|.++-|||+..+.+.-....+ .......-=+|++||
T Consensus        80 ~~~~~~~~~~~d~i~IE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vi~vvD~~~~~~~~~~~~~-~~~Qi~~Ad~ivlnk  158 (317)
T c1nijA_          80 LDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-AQSQVGYADRILLTK  158 (317)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHH-HHHHHHTCSEEEEEC
T ss_pred             HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHH-HHHHHHHCCEEEEEC
T ss_conf             9841255468668998088757989999886308201130898017899740267776632255-644531077899605


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCC
Q ss_conf             57777899999999986588614308970079833678999
Q batch____       500 IDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  540 (890)
Q Consensus       500 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sa~~g~~  540 (890)
                      +|+.... +++...+...+-...-+-....-++.+...+.+
T Consensus       159 ~D~~~~~-~~i~~~i~~lnP~a~i~~~~~g~vd~~~l~~~~  198 (317)
T c1nijA_         159 TDVAGEA-EKLHERLARINARAPVYTVTHGDIDLGLLFNTN  198 (317)
T ss_dssp             TTTCSCT-HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCC
T ss_pred             CCCCCHH-HHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCC
T ss_conf             5668989-999999974089977999630546878971988