 |
| Job Description | P03018 | | Confidence | 97.65% | Date | Thu Jan 5 10:57:53 GMT 2012 |
| Rank | 86 | Aligned Residues | 59 |
| % Identity | 25% | Template | c2vl7A_ |
| PDB info |
PDB header:unknown function | Chain: A: PDB Molecule:xpd; |
PDBTitle: structure of s. tokodaii xpd4
|
| Resolution | 2.25 Å |
|
 |
|   |   |
12 | . | . | . | . | . | . | . | 20 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
D | K | Q | R | E | A | V | A | A | . |
. |
. |
. |
. |
. |
P | R | S | N | L | L | V | L | A | G | A | G | S | G | K | T | R | V | L | V | H | R | I | A | W | L | M | S | V | E | N | C | S | P | Y | S | I | M | A | V | T | F | T | N | K | A | A | A | E | M | R | H | R | I | G | Q | L |
| Query Conservation |   |
  |   |
|   |   |
|
|   |   | . | . | . | . | . | . |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|   |   |
|
|   |
|
|   |   |
|
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|   |
|
|
|   |   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|
| Template Sequence |   |
Q | W | Q | A | E | K | L | G | E | A | I | N | A | L | K | H | G | K | T | L | L | L | N | A | K | P | G | L | G | K | T | V | F | V | E | V | L | G | M | Q | L | . |
. |
. |
. |
. |
. |
. |
K | K | K | V | L | I | F | T | R | T | H | S | Q | L | D | S | I | Y | K | N | A | K | L | L |
| Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|