53 c1vmaA_ Probab=99.43   E-value=2.9e-11  Score=87.98  Aligned_columns=166  Identities=19%

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHC----CCEEEEECCCCCCCCCHHHHHHH
Q ss_conf             497699985598888899999999862036-8529996144670389999855----96289976887576426899999
Q batch____       102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRAT----GTPAIQVNTGKGCHLDAQMIADA  176 (290)
Q Consensus       102 ~~~~~l~l~g~PGaGKTTLL~~ll~~l~~~-~~vaVI~~d~~t~~Da~~i~~~----G~~v~~i~Tgg~c~~~a~~v~~a  176 (290)
                      ....++.|+|.||+||||++-+|...+... .++++|..|....--.+.+...    |+++....++.-   .+....++
T Consensus        90 ~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~~~~~~~~~---~~~~~~~~  166 (294)
T c1vmaA_          90 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGAD---PAAVAFDA  166 (294)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCC---HHHHHHHH
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCC---HHHHHHHH
T ss_conf             896699998068876024899999999967994899975876864799999999761982897488369---89999999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCHHHHHHC-----------------CEEEEEECCCCCCCHHHHHHHHHC--CCCEEEE
Q ss_conf             997334299699981876533301233424-----------------757999742224200676667634--5888999
Q batch____       177 APRLPLDDNGILFIENVGNLVCPASFDLGE-----------------KHKVAVLSVTEGEDKPLKYPHMFA--AASLMLL  237 (290)
Q Consensus       177 l~~l~~~~~d~l~IE~vG~lv~pa~~~lg~-----------------~~~v~v~~v~eg~d~~~k~~~~~~--~advivl  237 (290)
                      +......++|+++||+.|  ..|....+..                 +.+++|+|++.+.+........+.  ..+-+|+
T Consensus       167 ~~~~~~~~~d~IlIDTaG--r~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~iIl  244 (294)
T c1vmaA_         167 VAHALARNKDVVIIDTAG--RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIIL  244 (294)
T ss_dssp             HHHHHHTTCSEEEEEECC--CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             HHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             999997799899981888--987857999999999999630356688539998114687899999999963089976999


Q ss_pred             ECHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf             7312156410008999999998489980999827888899999
Q batch____       238 NKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQW  280 (290)
Q Consensus       238 NK~DL~~~~~~d~~~~~~~~~~~np~~~V~~vSA~tGeG~~~l  280 (290)
                      ||.|-......-+..+.+.      ..||.+++-  |+.++++
T Consensus       245 TKlDe~~~~G~~l~~~~~~------~~Pi~~i~~--Gq~v~Dl  279 (294)
T c1vmaA_         245 TKLDGTAKGGITLAIAREL------GIPIKFIGV--GEKAEDL  279 (294)
T ss_dssp             ECGGGCSCTTHHHHHHHHH------CCCEEEEEC--SSSGGGE
T ss_pred             ECCCCCCCHHHHHHHHHHH------CCCEEEEEC--CCCCCCC
T ss_conf             7444788557999999985------798899965--9984554