5 c1nijA_ Probab=99.95   E-value=1.9e-27  Score=185.90  Aligned_columns=163  Identities=24%

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf             4976999855988888999999998620368529996144-670389999855962899768875764268999999973
Q batch____       102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL  180 (290)
Q Consensus       102 ~~~~~l~l~g~PGaGKTTLL~~ll~~l~~~~~vaVI~~d~-~t~~Da~~i~~~G~~v~~i~Tgg~c~~~a~~v~~al~~l  180 (290)
                      ..|.+.=|-|-.||||||||+++++. ....++|||+||+ .+.+|+..+...+.+++++.+||+||+...++..+|..+
T Consensus         1 ~~ipv~iitGfLGaGKTTll~~ll~~-~~~~~~avi~Nefg~~~iD~~ll~~~~~~v~~l~~GCiCC~~~~~~~~~l~~l   79 (317)
T c1nijA_           1 NPIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL   79 (317)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHS-CCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCEECCCHHHHHHHHHHH
T ss_conf             97618998089888988999999842-69973899971664442058898407972999779954213247789999999


Q ss_pred             HHC------CCCEEEEECCCCCCCCHHH------------HHHCCEEEEEECCCCCCCHHHHHHH---HHCCCCEEEEEC
Q ss_conf             342------9969998187653330123------------3424757999742224200676667---634588899973
Q batch____       181 PLD------DNGILFIENVGNLVCPASF------------DLGEKHKVAVLSVTEGEDKPLKYPH---MFAAASLMLLNK  239 (290)
Q Consensus       181 ~~~------~~d~l~IE~vG~lv~pa~~------------~lg~~~~v~v~~v~eg~d~~~k~~~---~~~~advivlNK  239 (290)
                      -..      ++|++|||++| +..|...            .+.-+..++|+|+..+.+.+..++.   |++.||++||||
T Consensus        80 ~~~~~~~~~~~d~i~IE~sG-~a~p~~i~~~l~~~~~l~~~~~l~~vi~vvD~~~~~~~~~~~~~~~~Qi~~Ad~ivlnk  158 (317)
T c1nijA_          80 LDNLDKGNIQFDRLVIECTG-MADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK  158 (317)
T ss_dssp             HHHHHHTSCCCSEEEEEEET-TCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred             HHHHCCCCCCCCEEEEECCC-CCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             98412554686689980887-57989999886308201130898017899740267776632255644531077899605


Q ss_pred             HHCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             1215641000899999999848998099982
Q batch____       240 VDLLPYLNFDVEKCIACAREVNPEIEIILIS  270 (290)
Q Consensus       240 ~DL~~~~~~d~~~~~~~~~~~np~~~V~~vS  270 (290)
                      +|+++.    .+.+.+.++.+||.++|+..+
T Consensus       159 ~D~~~~----~~~i~~~i~~lnP~a~i~~~~  185 (317)
T c1nijA_         159 TDVAGE----AEKLHERLARINARAPVYTVT  185 (317)
T ss_dssp             TTTCSC----THHHHHHHHHHCSSSCEEECC
T ss_pred             CCCCCH----HHHHHHHHHHHCCCCEEEEEE
T ss_conf             566898----999999997408997799963