BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (85 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B8GY96 UPF0386 protein CCNA_00226 n=75 Tax=Proteobacter... 101 9e-21 UniRef50_A6WZC6 UPF0386 protein Oant_1614 n=6 Tax=Proteobacteria... 96 3e-19 UniRef50_B0T202 UPF0386 protein Caul_4643 n=13 Tax=Proteobacteri... 91 8e-18 UniRef50_B6ITG2 UPF0386 protein RC1_1783 n=14 Tax=Alphaproteobac... 91 8e-18 UniRef50_Q2RSF1 UPF0386 protein Rru_A2144 n=4 Tax=Proteobacteria... 86 5e-16 UniRef50_Q5E6I2 UPF0386 protein VF_0869 n=1 Tax=Vibrio fischeri ... 86 5e-16 UniRef50_Q1DBJ3 UPF0386 protein MXAN_1729 n=1 Tax=Myxococcus xan... 73 2e-12 >UniRef50_B8GY96 UPF0386 protein CCNA_00226 n=75 Tax=Proteobacteria RepID=Y226_CAUCN Length = 91 Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 61/85 (71%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+ +Q TLH LA+G RI RD +GR+ S +C +R+G LTDCT+AVF+ LK K+LI Sbjct: 1 MNISKPQQRTLHALAQGGRIELERDDNGRIISADCLTRDGWALTDCTVAVFQSLKRKRLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S +G PYRI L +RAQLDNR Sbjct: 61 ASQDGGPYRITRLGLANLRAQLDNR 85 >UniRef50_A6WZC6 UPF0386 protein Oant_1614 n=6 Tax=Proteobacteria RepID=Y1614_OCHA4 Length = 84 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 1/85 (1%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+SR EQ LHVLA+G I H R+ G + +EC++REG LL+DCT+AVF++L+ K+LI Sbjct: 1 MNISRMEQRVLHVLAQGGYIRHQRED-GHICEIECFTREGYLLSDCTMAVFQQLRRKRLI 59 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 +S G PYRI+ VRAQL+NR Sbjct: 60 ESRMGSPYRISFKGRENVRAQLNNR 84 >UniRef50_B0T202 UPF0386 protein Caul_4643 n=13 Tax=Proteobacteria RepID=Y4643_CAUSK Length = 91 Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 42/85 (49%), Positives = 56/85 (65%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+ +Q TLH LA+G RI +RD GR+ + C + EG L+DC+LAVFK LK ++ I Sbjct: 1 MNISKPQQRTLHALAQGARIELLRDDHGRIVAAYCITGEGWRLSDCSLAVFKALKKRRFI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S G PYRI +RAQ+DNR Sbjct: 61 ASSGGGPYRITRDGAVNLRAQVDNR 85 >UniRef50_B6ITG2 UPF0386 protein RC1_1783 n=14 Tax=Alphaproteobacteria RepID=Y1783_RHOCS Length = 86 Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 55/85 (64%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+ EQ TLH LA+G RI +D R+ V+C +REG L DC + F+KL++K+LI Sbjct: 1 MNISKPEQRTLHALARGGRIDIEKDDDRRIIEVDCITREGWRLLDCDMTTFRKLRSKRLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S NG PYRI L VR Q DNR Sbjct: 61 ASENGGPYRITRKGLAAVRPQPDNR 85 >UniRef50_Q2RSF1 UPF0386 protein Rru_A2144 n=4 Tax=Proteobacteria RepID=Y2144_RHORT Length = 90 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 40/84 (47%), Positives = 55/84 (65%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 M +SR EQ LHVLA G RI H R ++T++ C +R+GL+L DC LAVF +L+ ++LI Sbjct: 1 MTISRTEQRVLHVLALGGRILHERGEGPKITTITCVTRDGLILADCDLAVFSRLRRRRLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDN 84 +S G PYR++ VR Q DN Sbjct: 61 ESRAGGPYRLSPLGRAMVRPQSDN 84 >UniRef50_Q5E6I2 UPF0386 protein VF_0869 n=1 Tax=Vibrio fischeri ES114 RepID=Y869_VIBF1 Length = 85 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 54/85 (63%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+QEQ LH LA G I + G++T + C++REG L++CT+ FKKLK KKLI Sbjct: 1 MNISKQEQRVLHTLAMGGEIRRYLNEDGKLTEITCFTREGYGLSNCTMDTFKKLKNKKLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S G+PYRI +AQ++ R Sbjct: 61 SSKGGRPYRITPLGATSAQAQMNQR 85 >UniRef50_Q1DBJ3 UPF0386 protein MXAN_1729 n=1 Tax=Myxococcus xanthus DK 1622 RepID=Y1729_MYXXD Length = 85 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/70 (52%), Positives = 49/70 (70%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+SR+E L+VLA+G RI +D +GR+T V C + EG L+ CTL VF++LK +KLI Sbjct: 1 MNVSRKELRVLNVLAQGGRILKHKDENGRLTHVACVTPEGWQLSLCTLEVFQQLKRRKLI 60 Query: 61 KSVNGQPYRI 70 SV G PY I Sbjct: 61 SSVKGGPYLI 70 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B8GY96 UPF0386 protein CCNA_00226 n=75 Tax=Proteobacter... 133 2e-30 UniRef50_B0T202 UPF0386 protein Caul_4643 n=13 Tax=Proteobacteri... 127 9e-29 UniRef50_B6ITG2 UPF0386 protein RC1_1783 n=14 Tax=Alphaproteobac... 125 6e-28 UniRef50_Q5E6I2 UPF0386 protein VF_0869 n=1 Tax=Vibrio fischeri ... 122 5e-27 UniRef50_A6WZC6 UPF0386 protein Oant_1614 n=6 Tax=Proteobacteria... 120 1e-26 UniRef50_Q2RSF1 UPF0386 protein Rru_A2144 n=4 Tax=Proteobacteria... 118 7e-26 UniRef50_Q1DBJ3 UPF0386 protein MXAN_1729 n=1 Tax=Myxococcus xan... 110 1e-23 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B8GY96 UPF0386 protein CCNA_00226 n=75 Tax=Proteobacteria RepID=Y226_CAUCN Length = 91 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 61/85 (71%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+ +Q TLH LA+G RI RD +GR+ S +C +R+G LTDCT+AVF+ LK K+LI Sbjct: 1 MNISKPQQRTLHALAQGGRIELERDDNGRIISADCLTRDGWALTDCTVAVFQSLKRKRLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S +G PYRI L +RAQLDNR Sbjct: 61 ASQDGGPYRITRLGLANLRAQLDNR 85 >UniRef50_B0T202 UPF0386 protein Caul_4643 n=13 Tax=Proteobacteria RepID=Y4643_CAUSK Length = 91 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 42/85 (49%), Positives = 56/85 (65%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+ +Q TLH LA+G RI +RD GR+ + C + EG L+DC+LAVFK LK ++ I Sbjct: 1 MNISKPQQRTLHALAQGARIELLRDDHGRIVAAYCITGEGWRLSDCSLAVFKALKKRRFI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S G PYRI +RAQ+DNR Sbjct: 61 ASSGGGPYRITRDGAVNLRAQVDNR 85 >UniRef50_B6ITG2 UPF0386 protein RC1_1783 n=14 Tax=Alphaproteobacteria RepID=Y1783_RHOCS Length = 86 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 43/85 (50%), Positives = 55/85 (64%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+ EQ TLH LA+G RI +D R+ V+C +REG L DC + F+KL++K+LI Sbjct: 1 MNISKPEQRTLHALARGGRIDIEKDDDRRIIEVDCITREGWRLLDCDMTTFRKLRSKRLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S NG PYRI L VR Q DNR Sbjct: 61 ASENGGPYRITRKGLAAVRPQPDNR 85 >UniRef50_Q5E6I2 UPF0386 protein VF_0869 n=1 Tax=Vibrio fischeri ES114 RepID=Y869_VIBF1 Length = 85 Score = 122 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 54/85 (63%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+S+QEQ LH LA G I + G++T + C++REG L++CT+ FKKLK KKLI Sbjct: 1 MNISKQEQRVLHTLAMGGEIRRYLNEDGKLTEITCFTREGYGLSNCTMDTFKKLKNKKLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 S G+PYRI +AQ++ R Sbjct: 61 SSKGGRPYRITPLGATSAQAQMNQR 85 >UniRef50_A6WZC6 UPF0386 protein Oant_1614 n=6 Tax=Proteobacteria RepID=Y1614_OCHA4 Length = 84 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+SR EQ LHVLA+G I H R G + +EC++REG LL+DCT+AVF++L+ K+LI Sbjct: 1 MNISRMEQRVLHVLAQGGYIRHQR-EDGHICEIECFTREGYLLSDCTMAVFQQLRRKRLI 59 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 +S G PYRI+ VRAQL+NR Sbjct: 60 ESRMGSPYRISFKGRENVRAQLNNR 84 >UniRef50_Q2RSF1 UPF0386 protein Rru_A2144 n=4 Tax=Proteobacteria RepID=Y2144_RHORT Length = 90 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 40/85 (47%), Positives = 56/85 (65%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 M +SR EQ LHVLA G RI H R ++T++ C +R+GL+L DC LAVF +L+ ++LI Sbjct: 1 MTISRTEQRVLHVLALGGRILHERGEGPKITTITCVTRDGLILADCDLAVFSRLRRRRLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 +S G PYR++ VR Q DN+ Sbjct: 61 ESRAGGPYRLSPLGRAMVRPQSDNQ 85 >UniRef50_Q1DBJ3 UPF0386 protein MXAN_1729 n=1 Tax=Myxococcus xanthus DK 1622 RepID=Y1729_MYXXD Length = 85 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 52/85 (61%) Query: 1 MNLSRQEQHTLHVLAKGRRIAHVRDSSGRVTSVECYSREGLLLTDCTLAVFKKLKTKKLI 60 MN+SR+E L+VLA+G RI +D +GR+T V C + EG L+ CTL VF++LK +KLI Sbjct: 1 MNVSRKELRVLNVLAQGGRILKHKDENGRLTHVACVTPEGWQLSLCTLEVFQQLKRRKLI 60 Query: 61 KSVNGQPYRINTTELNKVRAQLDNR 85 SV G PY I L + R Sbjct: 61 SSVKGGPYLITRLGLQALCGSSKTR 85 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.140 0.400 Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,649,516 Number of Sequences: 3077464 Number of extensions: 9616201 Number of successful extensions: 23666 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23650 Number of HSP's gapped (non-prelim): 14 length of query: 85 length of database: 1,040,396,356 effective HSP length: 55 effective length of query: 30 effective length of database: 871,135,836 effective search space: 26134075080 effective search space used: 26134075080 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 87 (38.1 bits)