144 d1pjra1 Probab=98.64   E-value=3.5e-07  Score=60.40  Aligned_columns=65  Identities=26%

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC----EEEEEECCHHHHHHHHHHHHHH
Q ss_conf             8998999999999986116994899847988789999999999985398----4999934499999999999987
Q batch____       198 RLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLENVLAQGK----QALVMVPEIGLTPQTIARFRER  268 (732)
Q Consensus       198 ~l~~~Q~~a~~~i~~~~~~~~~~Ll~a~TGSGKT~v~~~~i~~~l~~g~----~vLil~P~~~L~~Q~~~~l~~~  268 (732)
                      .||++|++|+.      ......+|.||.|||||.+.+..+...+.+++    ++|+++|+..++.++.+++.+.
T Consensus        11 ~L~~~Q~~~I~------~~~~~~lI~G~pGTGKT~~l~~~i~~ll~~~~~~~~~iL~lt~s~~a~~~~~~r~~~~   79 (315)
T d1pjra1          11 HLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL   79 (315)
T ss_dssp             TSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHHH------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHHH
T ss_conf             12899999996------6899789983899878799999999999808999767778716989999898878875