63 c3ly5A_ Probab=99.87   E-value=1.1e-19  Score=135.14  Aligned_columns=176  Identities=24%

Q ss_pred             CCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             48983676777746620012101222111122345678888998999999999986116994899847988789999999
Q batch____       158 LEFNDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSV  237 (732)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~a~~~i~~~~~~~~~~Ll~a~TGSGKT~v~~~~  237 (732)
                      .+.++..+++|.+.|+                       ..+++.|++|++.+.+    ++++++++|||||||++|+.+
T Consensus         9 ~~l~~~il~~L~~~g~-----------------------~~~~~~Q~~ai~~ll~----g~~viv~a~tgsGKT~~~~l~   61 (211)
T c3ly5A_           9 FLVNENTLKAIKEMGF-----------------------TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIP   61 (211)
T ss_dssp             CCCCHHHHHHHHHTTC-----------------------CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCC-----------------------CCCCHHHHHHHHHHHC----CCCEEEEECCCCCHHHHHHHH
T ss_conf             8888899999997789-----------------------9889899999999967----997999977997225899999


Q ss_pred             HHHHHHC-------CCEEEEEECCHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf             9999853-------984999934499999999999987---399689998787868999999998469980998398898
Q batch____       238 LENVLAQ-------GKQALVMVPEIGLTPQTIARFRER---FNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTRSAL  307 (732)
Q Consensus       238 i~~~l~~-------g~~vLil~P~~~L~~Q~~~~l~~~---~~~~v~~~~~~~~~~~r~~~~~~~~~~~~~IvV~T~~~l  307 (732)
                      +.+.+..       +.+++|++|+++|+.|+++.+.+.   .+..+..+.+.....+....+..    ..+++++||.++
T Consensus        62 ~l~~l~~~~~~~~~~~~~iii~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~i~tp~~l  137 (211)
T c3ly5A_          62 AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRL  137 (211)
T ss_dssp             HHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHH
T ss_pred             HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCC----CCCEEEECHHHH
T ss_conf             9999973000013587427971530328999999999864539606888733771588884027----882798466899


Q ss_pred             HHH--------CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHC
Q ss_conf             522--------02586899855210010000103888999998413334872899838999899999970
Q batch____       308 FTP--------FKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQIPIILGSATPALETLCNVQQ  369 (732)
Q Consensus       308 ~~~--------l~~l~liViDE~H~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~SaTp~~~~~~~~~~  369 (732)
                      ...        +.++.++|+||+|+...++.........+..     ..+++++++|||.+.+....+..
T Consensus       138 ~~~l~~~~~~~~~~l~~iViDE~~~l~~~~~~~~~~~i~~~l-----~~~~q~v~~SAT~~~~~~~l~~~  202 (211)
T c3ly5A_         138 LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL-----PTRRQTMLFSATQTRKVEDLARI  202 (211)
T ss_dssp             HHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS-----CSSSEEEEECSSCCHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHC-----CCCCCEEEEECCCCHHHHHHHHH
T ss_conf             999961253200542189973058832458699999999975-----99997999986799899999998