231 d2hoxa1 Probab=99.39   E-value=1.1e-09  Score=78.34  Aligned_columns=291  Identities=11%

Q ss_pred             HHHHHHHHHHCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--EEEECCHHHHHHHHHHHHCC
Q ss_conf             9999999998298810146440253344269999999999998647776308665760--79956807899999997098
Q batch____        98 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP--NLVCGPVQICWHKFARYWDV  175 (466)
Q Consensus        98 ~~~v~~la~l~~~p~~~~~~~~G~~t~G~sea~l~a~~aar~~~~~~~~~~g~~~~~~--~iv~~~~H~s~~Kaa~~~g~  175 (466)
                      .+.++-+....|-+.-+....  ++|+|+++++.+++.+....      .......+|  +++..-........+.++|.
T Consensus       106 ~~~i~~l~~~~g~~~~~~~~i--v~t~G~~~~l~~a~~aL~~p------Gd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~  177 (425)
T d2hoxa1         106 EKTIKELHEVVGNAAAKDRYI--VFGVGVTQLIHGLVISLSPN------MTATPDAPESKVVAHAPFYPVFREQTKYFDK  177 (425)
T ss_dssp             HHHHHHHHHHHTCBCCTTCEE--EEESHHHHHHHHHHHHHSCC------TTTCTTSCCEEEEECSSCCHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCCCCCCCEE--EEECCHHHHHHHHHHHHCCC------CCCCCCCCCCEEEECCHHHHHHHHHHHHCCC
T ss_conf             999999988508867887769--99468899999999986488------8612356774357300237789999985599


Q ss_pred             EEEEEEECCCCCEECHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHCHHHCCCC
Q ss_conf             15998606876605799999840218869999418878643379999999999841001686289840102011210235
Q batch____       176 ELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVA  255 (466)
Q Consensus       176 ~~~~Vp~~~~~~~~d~~~l~~~i~~~t~~Vv~~~gtt~~G~~dpi~eI~~i~~~~~a~~~~di~lHVDaA~gg~~~~f~~  255 (466)
                      +...++       +|.+.+++++++++.+++.+.++++||.+-+       +.+++      +++.+|-+|+.....-..
T Consensus       178 ~~~~~~-------~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~------~~~i~De~y~~~~~~~~~  237 (425)
T d2hoxa1         178 KGYVWA-------GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKG------CKSIYDMVYYWPHYTPIK  237 (425)
T ss_dssp             TTEEEE-------EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTT------CEEEEECTTCSTTTSCCC
T ss_pred             CCCCCC-------CCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECC------CEEEEECCCCCCCCCCCC
T ss_conf             744424-------7988999724888579998178888560654-------23239------689971432343323333


Q ss_pred             CCCCCCCCCCCCCEEEECCHHCCC-CCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             442000485775479842022387-7757379998588897787513766558876776536766407899999999983
Q batch____       256 PDIVWDFRLPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL  334 (466)
Q Consensus       256 ~~~~~d~~~~~vDSis~s~HK~~~-~p~g~g~ll~r~~~~l~~~~~~~~~ylg~~~~~~tl~~Sr~~~~~l~~~~~l~~l  334 (466)
                      ...       .-+....|+-|..+ .-.-+||++..++........             ....+..+.....+.++...+
T Consensus       238 ~~~-------~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~-------------~~~~~~~~~s~~~Q~aA~~~L  297 (425)
T d2hoxa1         238 YKA-------DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN-------------YMTKNTEGTPRETQLRSLKVL  297 (425)
T ss_dssp             SCB-------CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH-------------HHHHHTSSCCHHHHHHHHHHH
T ss_pred             CCC-------CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHH-------------HHHCCCCCCCHHHHHHHHHHH
T ss_conf             456-------854999815510123323101899689899999998-------------641057773689999999996


Q ss_pred             -------------CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC----------CCCCEEEEEEEECCCCCCCC
Q ss_conf             -------------8112899999999999999999850698799827887----------77660799993067765868
Q batch____       335 -------------GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP----------DEGIPAVCFKLKDGEDPGYT  391 (466)
Q Consensus       335 -------------G~~G~~~~~~~~~~la~~l~~~L~~~~~~ei~~~~~~----------~~~l~iV~F~~~~~~~~~~~  391 (466)
                                   +.+-++...+...+..+.+.+.|.+.+.|.+......          ++.-..+-++........  
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~--  375 (425)
T d2hoxa1         298 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKD--  375 (425)
T ss_dssp             HHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCS--
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH--
T ss_conf             020134565555489999999999999999999998635763003456554322100137787616998678980899--


Q ss_pred             HHHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999999999779830-2654788757856999995699999999999999999999
Q batch____       392 LYDLSERLRLRGWQV-PAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK  446 (466)
Q Consensus       392 ~~~i~~~L~~~G~~v-p~~~lp~~~~~~~~LRivv~~~~t~~~ve~~v~di~~~~~  446 (466)
                         +...|.++|+.+ |...+   +.+...+|+++..  +.++.|++++.|++.++
T Consensus       376 ---~~~lL~e~GI~v~pGs~F---G~~~~~vRiSl~~--~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         376 ---CYQTFQNGRINTQNGVGF---EASSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             ---HHHHHHHTTEECEEGGGG---TSCTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHCCEEEECCCCC---CCCCCEEEEEECC--CHHHHHHHHHHHHHHHH
T ss_conf             ---999999669499717023---8988659999139--98999999999999872