BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (223 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q5PMJ1 Virulence transcriptional regulatory protein pho... 432 e-120 UniRef50_B4EVF9 Two-component response regulator n=19 Tax=Entero... 345 9e-94 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 206 4e-52 UniRef50_B9ZMZ7 Two component transcriptional regulator, winged ... 202 1e-50 UniRef50_B7VGK5 DNA-binding response regulator in two-component ... 197 2e-49 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 187 2e-46 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 180 4e-44 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 180 4e-44 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 175 1e-42 UniRef50_Q0VPT5 DNA-binding heavy metal response regulator, puta... 174 2e-42 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 171 1e-41 UniRef50_C6QB49 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A6EUI4 DNA-binding heavy metal response regulator, puta... 166 4e-40 UniRef50_A1RNU1 Two component transcriptional regulator, winged ... 166 7e-40 UniRef50_Q20WN2 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_Q31JS2 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax... 160 2e-38 UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=... 159 9e-38 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 155 8e-37 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 154 2e-36 UniRef50_Q21TS4 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=S... 152 1e-35 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 150 2e-35 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 150 4e-35 UniRef50_Q2W278 Response regulator consisting of a CheY-like rec... 149 6e-35 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 149 7e-35 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 148 2e-34 UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrh... 147 2e-34 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 145 9e-34 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 145 1e-33 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 145 1e-33 UniRef50_B2V5Y8 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_UPI00017468BB two component transcriptional regulator, ... 144 2e-33 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 144 3e-33 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 143 3e-33 UniRef50_A3JZA4 Two component response regulator n=9 Tax=Rhodoba... 143 4e-33 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 143 5e-33 UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco... 142 6e-33 UniRef50_C6BG23 Two component transcriptional regulator, winged ... 142 6e-33 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 142 7e-33 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 142 9e-33 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 142 9e-33 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 141 1e-32 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 141 2e-32 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 141 2e-32 UniRef50_Q6AQP4 Probable two-component system response regulator... 141 2e-32 UniRef50_B3PG57 Response regulator receiver domain protein n=5 T... 140 3e-32 UniRef50_B9MHH2 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_C8WMT6 Two component transcriptional regulator, winged ... 140 4e-32 UniRef50_A0KWE7 Two component transcriptional regulator, winged ... 140 4e-32 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 140 4e-32 UniRef50_Q2P6R9 Two-component system regulatory protein n=28 Tax... 140 4e-32 UniRef50_A1SID6 Two component transcriptional regulator, winged ... 140 4e-32 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 139 5e-32 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 139 5e-32 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 139 5e-32 UniRef50_B6QYV6 DNA-binding response regulator n=1 Tax=Pseudovib... 139 6e-32 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_C9XWL0 Transcriptional regulatory protein qseB n=1 Tax=... 139 7e-32 UniRef50_Q2IGB7 Two component transcriptional regulator, winged ... 139 8e-32 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 139 8e-32 UniRef50_Q92V41 Putative two-component response regulator protei... 139 9e-32 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_A1TTN7 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_A6W2Y0 Two component transcriptional regulator, winged ... 138 1e-31 UniRef50_A3SUZ3 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 137 2e-31 UniRef50_B2V7S5 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_B7S3C0 Response regulator receiver domain protein n=1 T... 137 3e-31 UniRef50_B5ZH18 Two component transcriptional regulator, winged ... 137 4e-31 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 136 5e-31 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bd... 136 5e-31 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 136 6e-31 UniRef50_A4X7Q0 Response regulator receiver n=46 Tax=Actinomycet... 136 7e-31 UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicu... 136 7e-31 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 135 7e-31 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 135 7e-31 UniRef50_Q2L1Q6 Two-component response regulator n=3 Tax=Proteob... 135 1e-30 UniRef50_A0LU58 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_Q1H1R2 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 135 1e-30 UniRef50_UPI0001B559F0 two-component system, response regulator ... 135 1e-30 UniRef50_A9BTX9 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 134 2e-30 UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bact... 134 2e-30 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 134 2e-30 UniRef50_A1TI70 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 134 2e-30 UniRef50_C4WQP6 Two-component response regulator n=1 Tax=Ochroba... 134 2e-30 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 134 2e-30 UniRef50_P21866 KDP operon transcriptional regulatory protein kd... 134 2e-30 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 134 3e-30 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 133 4e-30 UniRef50_B0ABP9 Putative uncharacterized protein n=1 Tax=Clostri... 133 4e-30 UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 133 4e-30 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 133 4e-30 UniRef50_C7RUD8 Two component transcriptional regulator, winged ... 133 4e-30 UniRef50_B8IU63 Two component transcriptional regulator, winged ... 133 6e-30 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 132 6e-30 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 132 6e-30 UniRef50_B5JZG0 Two-component transcriptional regulator, winged ... 132 6e-30 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 132 7e-30 UniRef50_A9GMJ5 Two-component response regulator n=3 Tax=Bacteri... 132 7e-30 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 132 8e-30 UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteob... 132 8e-30 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 132 8e-30 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 132 8e-30 UniRef50_Q47EV7 Response regulator receiver:Transcriptional regu... 132 9e-30 UniRef50_C3NYL4 DNA-binding response regulator n=36 Tax=Vibriona... 132 9e-30 UniRef50_UPI00016C506D two component transcriptional regulator, ... 132 1e-29 UniRef50_D2R313 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_A5FFW8 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_C0C014 Putative uncharacterized protein n=2 Tax=Clostri... 132 1e-29 UniRef50_Q7CWZ7 Two component response regulator n=2 Tax=Alphapr... 132 1e-29 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 131 2e-29 UniRef50_UPI0001AEBE73 response regulator n=1 Tax=Alteromonas ma... 131 2e-29 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 130 2e-29 UniRef50_A6WZ81 Cell cycle response regulator ctrA n=152 Tax=cel... 130 2e-29 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 130 3e-29 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_Q03V75 DNA-binding response regulator, OmpR family (Rec... 130 4e-29 UniRef50_C7H2X2 KDP operon transcriptional regulatory protein Kd... 130 4e-29 UniRef50_C8W872 Two component transcriptional regulator, winged ... 130 5e-29 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 130 5e-29 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 129 5e-29 UniRef50_B2TDT5 Two component transcriptional regulator, winged ... 129 5e-29 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 129 6e-29 UniRef50_C9ZA01 Putative two-component system response regulator... 129 6e-29 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 129 6e-29 UniRef50_UPI0000164CF1 response regulator n=1 Tax=Deinococcus ra... 129 6e-29 UniRef50_A1B2L3 Two component transcriptional regulator, winged ... 129 6e-29 UniRef50_A7TD94 Predicted protein (Fragment) n=1 Tax=Nematostell... 129 6e-29 UniRef50_B8HC02 Two component transcriptional regulator, winged ... 129 7e-29 UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnos... 129 7e-29 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 129 7e-29 UniRef50_C4L2J9 Two component transcriptional regulator, winged ... 129 7e-29 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 129 7e-29 UniRef50_Q026B5 Two component heavy metal response transcription... 129 7e-29 UniRef50_A4JRJ8 Two component transcriptional regulator, winged ... 129 8e-29 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 129 8e-29 UniRef50_C1TR79 Response regulator with CheY-like receiver domai... 129 9e-29 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 129 9e-29 UniRef50_Q5SIK7 Response regulator n=12 Tax=Deinococci RepID=Q5S... 129 9e-29 UniRef50_A6W3P8 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_B9JYM6 Two component response regulator n=2 Tax=Rhizobi... 128 1e-28 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 128 1e-28 UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteob... 128 1e-28 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_C9YE22 Response regulator mprA n=1 Tax=Curvibacter puta... 128 1e-28 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 128 1e-28 UniRef50_A1SG19 Response regulator receiver n=7 Tax=Actinomyceta... 128 1e-28 UniRef50_Q21ZH1 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_B3PS81 Putative two-component response regulator protei... 128 1e-28 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 128 1e-28 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 128 1e-28 UniRef50_C8X3Y5 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 128 2e-28 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_B8G869 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_D1BX45 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_UPI0001C31C36 two component transcriptional regulator, ... 127 2e-28 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 127 2e-28 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 127 2e-28 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 127 2e-28 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 127 2e-28 UniRef50_C6BHC0 Two component transcriptional regulator, winged ... 127 2e-28 UniRef50_A8F0H8 Transcriptional activator protein CzcR n=24 Tax=... 127 2e-28 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 127 2e-28 UniRef50_P0A4H9 Transcriptional regulatory protein dltR n=9 Tax=... 127 2e-28 UniRef50_C8WRU6 Two component transcriptional regulator, winged ... 127 2e-28 UniRef50_A6T2K6 Two-component response regulator n=20 Tax=Proteo... 127 3e-28 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 127 3e-28 UniRef50_D1CC84 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 127 3e-28 UniRef50_A7K1J9 DNA-binding response regulator n=13 Tax=Vibriona... 127 3e-28 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 127 3e-28 UniRef50_B1ZUL4 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_UPI0001BC3112 two component transcriptional regulator, ... 127 3e-28 UniRef50_B6FX18 Putative uncharacterized protein n=1 Tax=Clostri... 127 3e-28 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 127 3e-28 UniRef50_Q8GP20 Swarming motility regulation protein rssB n=14 T... 127 4e-28 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 127 4e-28 UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermom... 127 4e-28 UniRef50_B1XPE6 Two-component response regulator; transcriptiona... 127 4e-28 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 127 4e-28 UniRef50_D0XTW5 Two component transcriptional regulator, winged ... 126 4e-28 UniRef50_Q03TF3 DNA-binding response regulator, OmpR family (Rec... 126 5e-28 UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Ta... 126 5e-28 UniRef50_A9F790 Two component system transcriptional regulatory ... 126 5e-28 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 126 5e-28 UniRef50_B1Y345 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 126 5e-28 UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostr... 126 6e-28 UniRef50_Q46TX9 Response regulator receiver:Transcriptional regu... 126 6e-28 UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacter... 126 6e-28 UniRef50_P22104 Transcriptional regulatory protein tctD n=145 Ta... 126 7e-28 UniRef50_C1XFY4 Two component transcriptional regulator, winged ... 125 7e-28 UniRef50_A1TXC3 Two component transcriptional regulator, winged ... 125 8e-28 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 125 8e-28 UniRef50_C2V3X6 Two component transcriptional regulator, winged ... 125 8e-28 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 125 8e-28 UniRef50_B0C620 Two component transcriptional regulator, winged ... 125 8e-28 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 125 9e-28 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 125 9e-28 UniRef50_Q1GD01 Two component transcriptional regulator, winged ... 125 9e-28 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 125 9e-28 UniRef50_A9VUJ1 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_C6L9B4 DNA-binding response regulator DltR n=3 Tax=Clos... 125 1e-27 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 125 1e-27 UniRef50_A8SMS1 Putative uncharacterized protein n=1 Tax=Parvimo... 125 1e-27 UniRef50_A9GK22 Response regulator n=1 Tax=Sorangium cellulosum ... 125 1e-27 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 125 1e-27 UniRef50_Q0IC97 DNA-binding response regulator n=3 Tax=Synechoco... 125 1e-27 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_D2ERE1 DNA-binding response regulator n=1 Tax=Streptoco... 125 1e-27 UniRef50_P0A5Z7 Transcriptional regulatory protein prrA n=41 Tax... 125 1e-27 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 125 1e-27 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 125 1e-27 UniRef50_O06978 Uncharacterized transcriptional regulatory prote... 125 2e-27 UniRef50_B0RVC3 Two-component system response regulator n=129 Ta... 125 2e-27 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 124 2e-27 UniRef50_C1XYD1 Response regulator with CheY-like receiver domai... 124 2e-27 UniRef50_C1A8B6 OmpR family two-component response regulator n=1... 124 2e-27 UniRef50_B1XY63 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 124 2e-27 UniRef50_D0MIF5 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_B9TDT4 Two-component system sensor histidine kinase/res... 124 2e-27 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 124 2e-27 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 124 2e-27 UniRef50_C4ZLE7 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_A5FFE2 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_B9P733 Predicted protein n=13 Tax=cellular organisms Re... 124 2e-27 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 124 2e-27 UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=... 124 2e-27 UniRef50_C4I5X0 DNA-binding response regulator n=78 Tax=Bacteria... 124 2e-27 UniRef50_B1QVC8 DNA-binding response regulator n=9 Tax=Bacteria ... 124 2e-27 >UniRef50_Q5PMJ1 Virulence transcriptional regulatory protein phoP n=211 Tax=cellular organisms RepID=PHOP_SALPA Length = 224 Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust. Identities = 208/223 (93%), Positives = 220/223 (98%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVEDNALLRHHLKVQ+QD+GHQVD AEDA+EADYYLNEH+PDIAIVDLGLPDEDGL Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGL 61 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIRRWRS+DVSLP+LVLTARE WQDKVEVLS+GADDYVTKPFHIEEVMARMQALMRRNS Sbjct: 62 SLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNS 121 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GLASQVI++PPFQVDLSRRELS+N+EVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP Sbjct: 122 GLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 181 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 DAELRESHTIDVLMGRLRKKIQAQYP +VITTVRGQGYLFELR Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFELR 224 >UniRef50_B4EVF9 Two-component response regulator n=19 Tax=Enterobacteriaceae RepID=B4EVF9_PROMH Length = 224 Score = 345 bits (884), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 159/223 (71%), Positives = 194/223 (86%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++EDN LLRHHL VQ +DAGHQVD A+DAKEAD+++ E PD+AIVDLGLPDEDG+ Sbjct: 1 MRILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGLPDEDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIRRWR N++++PI+VLTARESWQ+KV L+AGADDYVTKPFH EE++AR+QALMRRN Sbjct: 61 SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ASQ++++ PF++DLSR+E I E IKLTAFEYTI+ETL+RN KVVSKD LM QLYP Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 DAE RESHTIDVLMGRLRKKI +Y +VI TVRGQGY F+++ Sbjct: 181 DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFDMK 223 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 206 bits (525), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 105/220 (47%), Positives = 142/220 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED ALLR L+ ++ G+ VD AED + A Y E+ D+A+VDLGLP GL Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I+ WR PIL+LTAR WQDKV L AGADDY+ KPFH+ E+MAR+ AL+RR+S Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S VI P +D + + I+ ++LTA+EY +E L+ G+ VSK L LY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ I+V +GRLRKK+ + ITT+RGQGY F Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRF 220 >UniRef50_B9ZMZ7 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=B9ZMZ7_9GAMM Length = 238 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 103/220 (46%), Positives = 148/220 (67%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +RV+V+ED+ LR + ++++ G +VD A D Y L E+ DIA+VDLGLP DGL Sbjct: 3 LRVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMDGL 62 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +IR+ R LPIL+LTAR+ WQDKVE L AGADDY+TKPFHI+E++AR++AL RR+ Sbjct: 63 DVIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSL 122 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + P +D + ++ +NDE + LT FEY ++ TL+R G+V+SK+ L LY Sbjct: 123 QAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLYE 182 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E RES+ I+VL+GRLR+K+ +I T+RG+GY F Sbjct: 183 HDEDRESNVIEVLIGRLRRKLDPGGSLGLIETLRGRGYRF 222 >UniRef50_B7VGK5 DNA-binding response regulator in two-component regulatory system with PhoQ, PhoP n=4 Tax=Vibrionaceae RepID=B7VGK5_VIBSL Length = 226 Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 150/224 (66%), Gaps = 3/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI-PDIAIVDLGLPDEDG 59 M V++VEDN +L HHL Q+ + GH V A + + D+ I+DLGLPD DG Sbjct: 1 MLVVLVEDNEILNHHLSSQLSEQGHTVHADRTASACLQTIQKQSNTDVMIIDLGLPDFDG 60 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 ++LI++ R ++++PIL+LTAR +WQDKVE L++GADDY+TKPF EE+ AR++AL+RRN Sbjct: 61 ITLIKQIRRKEIAVPILILTARGNWQDKVEGLNSGADDYLTKPFQFEELHARLEALVRRN 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G ++ I +D + +S +D +I+LTA E+ I E LIR+ ++VSK + LY Sbjct: 121 QGFSASQIKAQSLTLDTQAKRISYDDALIELTALEFQIFEYLIRHCLQIVSKQQIADSLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFEL 222 E + + I+V++ RLRKK+ QY Q ++I+T+RGQGY FEL Sbjct: 181 AQGENVQLNNIEVIVSRLRKKL-TQYTQAKLISTIRGQGYRFEL 223 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/218 (46%), Positives = 146/218 (66%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +LK +Q+A + +D A D + Y E D AI+D+GLP DG+ Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLI+ R VS PILVLTAR+SWQDKV L AGADDY+TKPFH EE++ARM+AL+RR + Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++S PF V+L+ E+ ++ ++ L++ EY + E L+ + G+V SK L +Y Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +S+ I+V + RLRKK+ ++I T+RGQGY Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGY 218 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 143/220 (65%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+LVVED+ L L + DAG+ VD A D +E + + D ++D+GLP DG+ Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ WR N ++P+L+LTAR+ W DKV+ AGADDYV KPFH+EEV+AR++AL+RR++ Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A ++ P +D +S+ +KLT+ EY ++ L+ ++G+VVS+ L+ LY Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+TI+V +GR+RKK+ ++I TVRG GYL Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLDV----DIIQTVRGLGYLL 244 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 143/218 (65%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L + ++ AG+ VD + D ++ + + + D AI+DLGLP DGL Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++RRWR ++P+L+LTAR SW++KV L GADDY+TKPF IEE++AR++AL+RR S Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ IS+ ++D S + +S + + LTA EY + L+ + KVVSK L +Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + R+S+ I+VL+ RLRKKI A + I T RGQGY Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGA----DAIRTRRGQGY 214 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 142/218 (65%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +L+ + DA + +D A D +E + E+ D AI+D+GLP DG+ Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +LI R R + PIL+LTAR++WQDKVE L AGADDY+TKPFH EE++AR++AL+RR + Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S VI P+ ++ S E+ D+ + L+ EY + E + + G+V SK L+ +Y Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +S+ I+V + RLRKK+ +I T+RGQGY Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGY 218 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 142/219 (64%), Gaps = 6/219 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP-DIAIVDLGLPDEDG 59 MR+L+VED L L Q++ +G D D EA + L E P D I+DLGLP DG Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGF-LGETEPYDAIILDLGLPGRDG 59 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 LS+++ WRS + P+LVLTAR +K+E L+AGADDY+TKPF + E++AR+QAL+RR Sbjct: 60 LSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRA 119 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +G AS ++ + ++D++ ++ IKLTA E+ ++ L+++ GKVVS+ L+ +Y Sbjct: 120 AGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 R+S+T++V +GR+RKK A ++I TVRG GY Sbjct: 180 AQDFDRDSNTVEVFIGRIRKKTHA----DLIETVRGLGY 214 >UniRef50_Q0VPT5 DNA-binding heavy metal response regulator, putative n=4 Tax=Gammaproteobacteria RepID=Q0VPT5_ALCBS Length = 222 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 139/222 (62%), Gaps = 5/222 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ LL + L Q++ AG VD A A+EA + + I+DLGLPD +GL Sbjct: 1 MRLLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDLGLPDGNGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++WR++ VS P+L+LTAR WQDKV L AGADDY+ KPF EE++AR+ A++RR+ Sbjct: 61 DVLKQWRTHKVSFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRSE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEV-IKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G ++ F++D +R+ L DE LT E+ ++ L+ G+V SK+ L+ QLY Sbjct: 121 GRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ + I+ + RLRK + + I T RGQGYLF+ Sbjct: 181 SIDDIPSENVIEAYVRRLRKLVGP----DTIKTRRGQGYLFD 218 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 139/222 (62%), Gaps = 6/222 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP-DIAIVDLGLPDEDG 59 MRVL+VED L L+ ++ AG VD A+D +EA +L E P D ++DLGLP DG Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEA-LFLGETEPFDAVVLDLGLPRLDG 59 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + ++RRWR+ + +P+L+LTAR W +KV AGADDYVTKPF +EEV+ R++AL+RR Sbjct: 60 IGVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRA 119 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +G S + P ++D + S+ + LTA EY I+ L+ G+ VS+ ++ +Y Sbjct: 120 AGHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVY 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 R+S+ IDVL+GRLR+K+ A +I TVRG GY E Sbjct: 180 DRDSDRDSNVIDVLVGRLRRKLGAP----LIHTVRGLGYRLE 217 >UniRef50_C6QB49 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QB49_9RHIZ Length = 229 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 141/218 (64%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+L++ED+ + L + AG V+ A++ + + AI+DLGLP GL Sbjct: 13 IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++RWR++D LP+L+L+AR +W +KV+ L+AGADDY+TKPFHI EV AR++AL+RR S Sbjct: 73 DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+AS V+S +D + + N E I+LTA E ++ + G++VS+ L+ LY Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + RES+TI+V + RLR+K+ A +VITTVRG GY Sbjct: 193 LEDSRESNTIEVYISRLRRKLGA----DVITTVRGLGY 226 >UniRef50_A6EUI4 DNA-binding heavy metal response regulator, putative n=1 Tax=Marinobacter algicola DG893 RepID=A6EUI4_9ALTE Length = 222 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 138/221 (62%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VEDNA+L + V + VD A++ KEA++++ I+D+GLPDE+GL Sbjct: 1 MKVLIVEDNAVLAEKISVWLAKENFTVDVAQNGKEANFFVETSSYQAIILDIGLPDENGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+++WRSN IL+LTAR +W ++VE L+AGADDY+ KPF +E+ AR+ A++RR Sbjct: 61 SLMQKWRSNGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIRRKD 120 Query: 121 GLASQVISLPPFQVDLSRRELSIND-EVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G + I++ F ++ + R L+ D + +LTA EY +++ +R+ +V S+D L+ LY Sbjct: 121 GRTTDKIAVDGFLLNSTYRTLTTPDHKEFRLTATEYRLLQCFLRSPDRVFSQDDLVESLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + V + RLRK + + I T+RGQGY F Sbjct: 181 NIERCPTRNVVQVYIARLRKIL----GKSRIKTLRGQGYYF 217 >UniRef50_A1RNU1 Two component transcriptional regulator, winged helix family n=23 Tax=Gammaproteobacteria RepID=A1RNU1_SHESW Length = 224 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 141/223 (63%), Gaps = 7/223 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VEDN +L + L Q++ AG+ D + A EADY + E D I+D+GLPD +GL Sbjct: 1 MKLLLVEDNPMLVNELAKQLKLAGYVTDITDKALEADYLIKETQYDCVILDIGLPDGNGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ WR+ +S P+++LTAR W +KVE +AGADDY+ KPFH +E++AR+QAL+ R Sbjct: 61 ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120 Query: 121 G---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G S+ ++ +D + + + + D + +LTA E+ +++ + + K++SK L + Sbjct: 121 GRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 LY + +ES+ ++V + LRKK+ + I T RGQGY+F Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL----GKTAIETRRGQGYIF 219 >UniRef50_Q20WN2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=Q20WN2_RHOPB Length = 221 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 142/219 (64%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ + L+ +Q AG+ V+ D +EA + + ++DLGLP DGL Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++RWR ND P+L+LTAR SW ++V+ + AGADDY+ KPF +EE++AR+++++RR++ Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A VIS+ +D + ++ + + L+ EY ++ L + G+VVS+ L +Y Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + + +S+ I+VL+GR+RKK+ + E+I T RG GYL Sbjct: 181 NEDAHDSNAIEVLIGRVRKKLGS----ELIETRRGFGYL 215 >UniRef50_Q31JS2 Two component transcriptional regulator, winged helix family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JS2_THICR Length = 223 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 138/219 (63%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED ALL +LK + + VD A D +EA Y LNE D+ I+DLGLP + GL Sbjct: 3 KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSGLQ 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ + R++ + P+L+LTAR +WQ++VE L GADDY+ KPFH EE++AR++ L++R + Sbjct: 63 VLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKRPTQ 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ + +++DL REL + ++ LT E+ + + + +V SKD+LM +L Sbjct: 123 PQARRLQFQEYELDLDCRELKVKEQRFALTKTEFALARLFLSHPNRVFSKDTLMQRLGDQ 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ I+V + +LR+ + + I T+RGQGY F Sbjct: 183 HHERDSNLIEVYIRKLRQYM----GKTAIETLRGQGYRF 217 >UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JKK7_AGRRK Length = 220 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 137/217 (63%), Gaps = 4/217 (1%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 ++ ED + ++ ++D + V D +EA Y + D+ I+DLGLP DGL+++ Sbjct: 1 MIAEDEPTIVSDMRRCLEDQHYIVSTVTDGEEAWYRGDVEHFDLVILDLGLPKLDGLTVL 60 Query: 64 RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLA 123 RRWR+ +P+++LTAR+ W+DKV+ + AGADDY+TKPF +EE++AR++ALMRR +G + Sbjct: 61 RRWRAGRRGMPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQS 120 Query: 124 SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAE 183 S ++S ++D +R +S + +++TA EY ++ L+ N G V+S+ + +Y + Sbjct: 121 SPILSNGVLELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIYDEET 180 Query: 184 LRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 S+ ++V++ RLR+K VI T RGQGYL Sbjct: 181 ELLSNALEVVVARLRRKFDGT----VIETRRGQGYLI 213 >UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=Acinetobacter radioresistens SK82 RepID=C6RM27_ACIRA Length = 221 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 138/222 (62%), Gaps = 4/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M V++VED+ + H + + V+ A ADY++ D+ ++DLGLPD+DGL Sbjct: 1 MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+R+WR + + PILVLTAR + +E L+ GADDY+TKPF ++E++AR+ AL RR+ Sbjct: 61 ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S V+ ++ +E+ + I+L+ EY+++ETL+ + +++ + L+ +LY Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + ES+ ++V + LR+K+ A + I T+RG GY+F++ Sbjct: 181 YQDSIESNALNVHIYHLRQKLNADF----IQTIRGVGYMFKV 218 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 135/220 (61%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED L + +++ + VD D +EA Y+ D I+D+ LP DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I+R R+ +PIL+LTAR++ DKV+ L GADDY+ KPF EE+MAR++ L+RRNS Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A VI++ +VDL + + + +IKL+ EY+I+E LIRN GK++ ++ + ++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ IDV + LRKKI Y ++I T+RG GY+ Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + G+ VD D ++A Y D+ ++DLGLP GL Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++WR ++ P+L+LTAR SW +++E L AGADDY+TKPFH EE+ R+QAL+RR+ Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GLASQ-VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 GLA+Q + +D R+ +S + I+LT+ E+ ++ + + G+++SK L LY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ I+V + LR+K+ + V+ T RGQGYL+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKLG----RAVVETRRGQGYLY 217 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDN L L +Q G+ VD D ++A Y D+ I+DLGLP GL Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ +WR+ ++ P+L+LTAR SW +++E L AGADDY++KPFH EE+ R+QAL+RR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 GLA+Q + +D SR+ +S + I+LTA E+ ++ + + +++SK L LY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ ++V + LR+K+ + VI T RGQGY++ Sbjct: 181 DGETERDSNVLEVHVNHLRRKLG----RSVIETRRGQGYIY 217 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + +++A + VD +A L+ DI ++DLGLPD DGL Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R + +LP+L+LTAR+ DK+ L AGADDY+ KPF I+E++AR++ L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +I++ +D + L+I++E I L E +++ L+ N G+V+SK+ L +LY Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E S+TI+V + LRKK+ P I T+RG GY Sbjct: 181 WGEEVASNTIEVHVSHLRKKM----PDNFIKTIRGVGYCI 216 >UniRef50_Q21TS4 Two component transcriptional regulator, winged helix family n=2 Tax=Burkholderiales RepID=Q21TS4_RHOFD Length = 239 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVEDN L L ++ + VD ++ +AD+ L ++ I+DL LP DG Sbjct: 16 MRILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGK 75 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R+ D P+L+LTA + Q +V L GADDY+ KPF IEE+ AR++ L+RR+S Sbjct: 76 EVLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSS 135 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS +I+ + + RE I+ +++ LT E ++E L+R +G V+K +L L+ Sbjct: 136 GQASPLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFS 195 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +E + I++ + RLRKK++ Q I T+RG GYL Sbjct: 196 LSEDASTDAIEIYVHRLRKKLEHSSAQ--IMTLRGLGYLL 233 >UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUD1_SULAA Length = 222 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 142/221 (64%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL++ED L +K +++ VD KEA +L D I+DL LPD G Sbjct: 1 MKVLIIEDEKKLGKLIKKGLEEESFIVDLVHTGKEALDFLTTQSYDAIILDLMLPDISGK 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R++ + P++VLTA++ +DK+E+L AGADDY+TKPF +E++AR++A++RR+ Sbjct: 61 DVLIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + S VIS+ ++DLS+ + + +IKL++ EY ++ I N GK+++KD+L+ +Y Sbjct: 121 DIKSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + S+ ++VL+ RLR KI+ + + I ++RG GY+F+ Sbjct: 181 LSFELNSNALEVLISRLRSKIEDE-NHKYIKSIRGLGYIFD 220 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ALL+ L +++ G+ D A AKEAD + + ++DLGLPDEDGL Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+ RWR N P+L+LTAR++ D+V L GADDY+ KPF + E AR++AL+RR+ Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + I + +DL+ +++ ++D+ I LT E+ I+ LI G V ++ L LY Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + S++++V + LR+KI + I T+RG GYL Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI----GKNRIKTLRGFGYLL 216 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+++L L ++ +G+ VD + EAD L+ D+ I+DLGLP GL Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R+ + +LP+L+LTA +S ++V+ L GADDY+ KPF + E+ AR++AL RR + Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+ D R ND V++L+A E ++E L++ G++VSK+ L+ L Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 E ++ I+V + RLRKKI+ P V ITTVRG GY E Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIE---PSGVRITTVRGLGYCLE 263 >UniRef50_Q2W278 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=11 Tax=Bacteria RepID=Q2W278_MAGSA Length = 225 Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 129/220 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDN L + ++ AG D +A AI+DLGLPD DGL Sbjct: 1 MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R+ PI+VLTAR+ D+V L+AGADDY+ KPF +EE++AR++A++RR Sbjct: 61 DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +SL D + RE+ ++ +++ + E ++E L+R +GKVVSK SL LY Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++++VL+ RLRK++Q + T+RG GY+ Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQTGAGVTVHTLRGIGYML 220 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 133/219 (60%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L + ++ + VD D +EA ++ D+ I D+ +P+ DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 I+R R + + P+++LTA+++ +DK+ L +GADDY+ KPF +E+ AR++ LMRRN Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GLA+ VI + +D+S+++++ N E I LT EY ++E L++N ++S+D ++ ++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 S+ +DV++ +RKK+ + +I T RG GY Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYF 219 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 138/218 (63%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED + ++ + + + EA L E D ++DLGLPD DGL Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+R WR++ + P+LVL+AR++ D+V L+ GADDY+ KPF ++EV+AR+++L+RR++ Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ + V++ P ++DL R ++ ++LT+ EY ++E ++N +V+++ + +++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + E++ IDV + RLR+K++A +I T+RG GY Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGY 262 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 135/221 (61%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED + + +++ G VD EA + D A++D+ LP DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R +SLPIL+L+AR +DK+E L++GADDY+ KPF ++E++AR++AL+RR + Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ V + ++L RE+ + I+LTA E++I+E L+R G+V ++ + +++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + +LRKKI Q++I TVRG GY E Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266 >UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89NT7_BRAJA Length = 224 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 130/220 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDNA L + + AG++ D A EA + I+DLGLPD DGL Sbjct: 1 MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R LP+LVLTAR QD+V L +GADDY+ KPF +EE++AR++A++RR Sbjct: 61 SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 L + + L D R++ I+D+ ++A E +++E L+R G+VV K ++ ++ Sbjct: 121 QLLGRSLRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIFG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 S+ ++V + RLRK++ + VI T+RG GYL Sbjct: 181 LEGEVASNAVEVYVSRLRKQLTEHGAKVVIHTIRGVGYLM 220 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 136/220 (61%), Gaps = 1/220 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED A + L + + G+ V+ AED + LN D+ I+D LP EDG+ Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+RR+R + + P+L LTAR++ ++V L AGADDY+TKPF +E++AR++AL+RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + V+ + DL + ++ + LTA E++++ +RN GKV+S+ + ++ D Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + S+T++V + LR K++A P+ VI T+RG+GY+ E Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPR-VIQTLRGRGYVLE 222 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 142/218 (65%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VED + + +++ G+ V+ AED ++ + D+ ++D+ LP DGL Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R + ++P++++TAR +++E L+ GADDY+TKPF+++E++AR+QAL RR+S Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + ++ + V+LS RE+ + E+++LT E+ ++E L+R+ G+V+++ ++ ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ++ +DV + RLRKK+ A + +I TVRG GY Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGY 234 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 140/222 (63%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L++ L ++ + VD + ++A Y+N D+ ++D+ +P +GL Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R+++ + P+L+LTA+++ D+V+ L GADDY+ KPF +E++AR++ LMRR + Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S V + VD + +++ D+VI L++ E+ I+E +IRN V+++D + ++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ IDV + LRKK+ +Q+ ++I TVRG GY+ + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRV 234 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 132/222 (59%), Gaps = 4/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+++L L ++ G+ VD D AD L D+ I+DLGLP GL Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R+ + LP+L+LTA +S + +V+ L GADDY+ KPF + E+ AR++AL RR + Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S +I D + R +++D + L+A E +++E L+ +G++VSK L+ L Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 E ++ I+V + RLRKK++ P V I TVRG GY E Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLE---PSGVKIITVRGLGYCLE 219 >UniRef50_B2V5Y8 Two component transcriptional regulator, winged helix family n=5 Tax=Aquificales RepID=B2V5Y8_SULSY Length = 219 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VEDN L + ++ ++ G+ VD A D KEA ++ D+ I+DL LPD DGL Sbjct: 1 MKILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ + P+++LTA+ +DK+ L GADDY+TKPF ++E++AR++A+ RR S Sbjct: 61 EVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRRVS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ + ++DL + + + + ++LT Y I+E L+RN GK+VS ++L+ + + Sbjct: 121 AEKKDIVLIDNLEIDLKNKVVKKSGKFVELTPKLYCILEQLVRNRGKIVSYETLLSKCWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E+ T+ + LRK I +++I T+ G GY E Sbjct: 181 ITEVPSRETMRANIKNLRKLIDPD--KKIIKTIEGVGYRIE 219 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ LR L +++ + VD A D E E+ D+ ++D+ LP G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R S P+L+LTAR++ QD+V+ L+ GADDY+TKPF IEE++AR++AL+RR + Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+++ +D + R++ E + +TA EYT++E L + G+VVS+ +L L+ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + S+ +DV + LRKK+ E+ITT RG GY E Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAP----ELITTRRGHGYSIE 227 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+A + + ++ G+ VD A D D A+VD+ LP+ DGL Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+RR R+ ++P+L L+AR S +D+V+ L AG DDY+TKPF E+ AR+QAL+RR S Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 -GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + +S +DL R +++ + ++L E++++E L+R+ G+ V+K ++ ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVLM RLR KI + I T+RG GY+F+ Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTR--IETLRGVGYVFK 225 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 137/224 (61%), Gaps = 13/224 (5%) Query: 1 MRVLVVED----NALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLP 55 M++LVVED N+++ HLK G+ VD A + +EA D+ H D+ ++DL +P Sbjct: 1 MKILVVEDEIDLNSVITRHLKKN----GYSVDSACNGEEAMDFTAVAHY-DLIVLDLMMP 55 Query: 56 DEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 DGL+ ++R R+ + P+L+LTA++ D V+ L AGADDY+ KPF +E++AR++ L Sbjct: 56 VMDGLTFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTL 115 Query: 116 MRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 +RRNSG + I ++DLS++ + + E I+LT EY I+E L+ N G+++++D + Sbjct: 116 IRRNSGNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIK 175 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 ++ S+ IDVL+ +RKK+ E I T RG GY+ Sbjct: 176 EHVWDFDYTGGSNVIDVLIKNIRKKLG---ECEAIQTKRGLGYV 216 >UniRef50_A3JZA4 Two component response regulator n=9 Tax=Rhodobacteraceae RepID=A3JZA4_9RHOB Length = 249 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+ V+EDN L H + +++D GH VD D EAD +L + D+ ++DL LP DGL Sbjct: 27 MRIAVIEDNEALAHGIAFRLRDRGHSVDLLHDGTEADAFLAQEGADLVVLDLNLPGMDGL 86 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R + P+++LTAR ++V L AGADDY+TKPF ++E+ AR++A+ RR + Sbjct: 87 SVLRALRRRNDGTPVILLTARSETAERVAGLDAGADDYLTKPFEMDELEARLRAMARRKN 146 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + L P D + R+L +++ + + E +E L+ G++VSK L+ +Y Sbjct: 147 IEFAARDKLGPLVFDRTGRQLMQDEQALDIPRREIATLECLLERRGRLVSKAQLISHVYG 206 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFEL 222 E I+ + RLRK+++ P + I T RG GY+ E+ Sbjct: 207 IGSDAEDSAIEPHVSRLRKRLE---PFGIRIKTARGLGYMLEV 246 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D ++ LK + +VD A D +EA Y+ + DI ++D+ LP DGLS Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R ++PI++LTA+ DK+ L GADDY+TKPF+I EV ARM+A++RRNS Sbjct: 73 VCQQIREFS-NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 122 LA-----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + S VI ++D R L I D+ I LTA E+ ++E L N GKV S+D+L+ Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQE--VITTVRGQGYLFEL 222 ++ ++ T+DV M RLR+KI+ P E + T G GY F + Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENN-PSEPKYVHTKWGVGYYFNV 238 >UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SVV6_9FIRM Length = 228 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 139/226 (61%), Gaps = 10/226 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED+ ++ +K+ ++ G++V+ A KEAD L EH D+ ++D LPD GL Sbjct: 3 RILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL-EHGFDLILLDRNLPDGRGLD 61 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 R R + +PI+ LTAR++ D +E AG DDY+ KPF +E + R++A++RR+ Sbjct: 62 YCRELRKS-TKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120 Query: 121 ---GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G+ + VD R ++ I+DE IKL+ EY I+E LI+N G+V+++D ++ + Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180 Query: 178 LYPDAE-LRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 ++ D E + +T++V + RLR+KI+ A P+ VI TV G GY F Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVI-TVFGIGYTF 225 >UniRef50_C6BG23 Two component transcriptional regulator, winged helix family n=69 Tax=Bacteria RepID=C6BG23_RALP1 Length = 234 Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV++D +R ++ +++ G +V +A+ + PD I+DLGLPD DG+ L Sbjct: 12 VLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGTRQPDAVILDLGLPDGDGMQL 71 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 IR R+ +P+LVL+AR +DK+E L AGADDY+TKPF + E++AR++ L+RR++ Sbjct: 72 IRELRTW-TEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHAKR 130 Query: 123 ---ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 VI +VDL+RR +S N E + LT EY ++ L+ G V++ L+ +++ Sbjct: 131 GEDGGSVIRFGEVEVDLARRLVSRNGEAVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 190 Query: 180 PDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 A SH + + MG LR K++ P+ ++T V G GY F Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEV-GVGYRF 232 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 124/220 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L +ED LR + + GH VD+A A+E D I+D+ LP + GL Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ WR V P+L+LTA +S +D+V L GADDY+ KPF I E+ AR++AL+RR Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G I + P ++D + R +S + LTA E+ +++ L R+ G++ S++ + +LY Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + S+ +D + LR+K+ ++I T RG GYL Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ +L + ++ +G+ VD + A L I+DL LPD DG+ Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+R+ R +LP+L+LTAR++ D+V L AG+DDY+ KPF ++E+ AR++AL+RR+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A V+ Q+ ++++ E +KLT EY +++ LI +G+V+SKD L LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E ES+ ++V + LRKK + ++I +RG GY+ Sbjct: 181 WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGYI 215 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L + ++ G+ +D D + L D+ I+DLGLP DGL Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+RR R+ SLP+L+LTAR++ D++ L AGADDY+ KPF + E+ AR++AL+RR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A +I +D + +++ N + LT EY ++ L+ GKV +++ L LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E ES+T++V + LRKK+ +I TVRG GYL E++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKLF----NGLIRTVRGIGYLVEVK 219 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 129/218 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LV+ED +LR L + + DAG+ VD A D +E + +E D+ I+D+ LP +G Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ R R+ +L+LTAR+ +D+V L +GADDY+ KPF +E++AR++AL+RR + Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++ + ++L +++S++ + L EY ++E L N +VVS+ + ++Y Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 D S+ +D + LRK I + I T RG GY Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGY 218 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 123/218 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+++D+ L L+ + +AGH V+ A D +Y+ D+ I+D+GLPD++G+ Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R++ + +L+LTAR+S KV+ L AGADDY+ KPF +E+ AR++AL RR Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ D + IKLTA EY I+E I N G ++++ L L+ Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 S+TID L+ +LR+K+ I T+RG GY Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGY 218 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 131/219 (59%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ALL LK + +G VD D + A L ++DLGLP DGL Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R P+LVLTAR+ +DKV L GADDYV KPF ++EV AR++ALMRR Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ ++ L ++D + R ++ + + LT E+ ++ L++++G V+++ L QLY Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E S+ ++V + LR+K+ +VI TVRG GY+ Sbjct: 181 WDEGVGSNALEVHVHHLRRKLG----NDVIRTVRGVGYM 215 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 135/221 (61%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ + ++ +++AG VD + +E + + AI+D+ LP+ DGL Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+I R+ P+L+L+A++S D+++ L G DDY+ KPF E++ R+QAL+RR+ Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + Q +S+ P ++DL R+++ + I+L A EY ++ + N G +SK S++ ++Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ +DVL+ RLR KI + Q++I T+RG GY+ Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221 >UniRef50_B3PG57 Response regulator receiver domain protein n=5 Tax=Gammaproteobacteria RepID=B3PG57_CELJU Length = 219 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ LL + ++ AG V+ + K A YL PDI ++DLGLPD DGL Sbjct: 1 MQILLVEDDNLLAEGMMNALKRAGFAVNLSRTGKAACTYLQAEPPDILLLDLGLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R + + +L+LTAR+S KV L AGADDY+TKPF ++E++AR++ L RR Sbjct: 61 DVLKFIRDKKLQVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRLG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +I + P ++ ++ + +N + + L+ EY +++ L+ N G + +++SL +LY Sbjct: 121 TANTAMIHVGPLSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + S+ I+V + LRKK+ P I T+RG GY+ Sbjct: 181 WNDEVASNAIEVHIHNLRKKL----PLNFIRTIRGVGYV 215 >UniRef50_B9MHH2 Two component transcriptional regulator, winged helix family n=2 Tax=Comamonadaceae RepID=B9MHH2_DIAST Length = 225 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 139/223 (62%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VEDNAL+ ++ ++ G D A +A ++ D ++DLGLPD DG+ Sbjct: 1 MHILIVEDNALVASGIQAGLELHGFTSDTAGSVAQAQAHMTSRQFDACVLDLGLPDGDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+R+WR+ ++LP+L+LTAR + +DKV G DDY+TKPF ++E++ R++AL+RR Sbjct: 61 SLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLRRAG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S +++L QV+++ E++ N I ++ E+ +++ L++ +G+V+S L LY Sbjct: 121 GRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDSLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + S+T++V + LRKK+ A +VI TVRG G+ R Sbjct: 181 LDQDVGSNTVNVHVHHLRKKLGA----DVIDTVRGLGFRLGAR 219 >UniRef50_C8WMT6 Two component transcriptional regulator, winged helix family n=2 Tax=Coriobacteriaceae RepID=C8WMT6_EGGLE Length = 226 Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ LL + L ++DA + VD A D +E +Y + + D+ ++D+ LP+ DG Sbjct: 1 MKLLIVEDDRLLSNALARSLRDA-YAVDQAFDGEEGLFYAAQDVYDLVVLDVMLPERDGF 59 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ R+ V P+L+LTAR + DK+ L +GADDY+ KPF +E++AR++A++RR + Sbjct: 60 SVLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRRTT 119 Query: 121 GLAS-QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G +++ + R+ I DE + L +Y I+E L+ + G ++SK+ L +++ Sbjct: 120 GRRDVGIVAFKELALHTRTRQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLFDKIW 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 S+ ++V + LRK + I T+RG GYLF Sbjct: 180 GFMSDTSSNVVEVYVSALRKALAPTGYDRYIKTIRGAGYLF 220 >UniRef50_A0KWE7 Two component transcriptional regulator, winged helix family n=12 Tax=Shewanella RepID=A0KWE7_SHESA Length = 219 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 131/218 (60%), Gaps = 5/218 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+++VEDN LL + + + G QVD ++A + ++DLGLPD +G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ WR+ VS+P +VLTA + K+E L GADDY+ KPF + E+ AR++A++RR Sbjct: 61 ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GL + +++ +DL+ RE+S D+ + L+ E+ ++ L ++ G+V++++ L Y Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E+ S++I+V + LRKK+ ++I TVRG GY Sbjct: 181 WDEV-GSNSIEVHIHHLRKKL----ANDLIKTVRGIGY 213 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 136/218 (62%), Gaps = 6/218 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL+VED+ LL +++++Q+ +QVD + + PDI I+DL LPD DGL Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++R R+ ++S P+L+LTAR + +++V L GADDY+TKPF ++E+ AR++A+ RR Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + + I+ ++D + R++ I+ + E+ ++ L+ N G+V+++ + LY Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLYA 182 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 D ES+ ++V + LRKK+ +E+I+TVRG GY Sbjct: 183 DDV--ESNALEVHIHNLRKKL----GKELISTVRGVGY 214 >UniRef50_Q2P6R9 Two-component system regulatory protein n=28 Tax=Proteobacteria RepID=Q2P6R9_XANOM Length = 233 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDNA L + +++ +GH VD D A L D+ ++D+GLP DGL Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R + P+L+LTAR+ +D+V+ L GADDY+ KPF E AR + L+RRN Sbjct: 61 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS+V+ + F D + L+++ I+L EY + + LI G+VV KD + L+ Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + I++ +GRLR+K+ A P ++ TVRG GY E Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAA-PLRIV-TVRGAGYKLE 219 >UniRef50_A1SID6 Two component transcriptional regulator, winged helix family n=1 Tax=Nocardioides sp. JS614 RepID=A1SID6_NOCSJ Length = 228 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDG 59 MR+LV ED+ L L+ + +AG QV+ A D + A + L++ D+A++D LP DG Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +++ RR R V+LPIL+LTAR +D+V L AGADDY+ KPF ++E++AR++AL RR Sbjct: 61 VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + + L VD R ++ I L+A E+ I+ L+ + G+VVS+ ++ +++ Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 S+ IDV + +R KI + E ITT+RG GY Sbjct: 181 DGETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGY 219 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 126/218 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L LK ++ D + D ++ Y L + D I+D+ LP DG+ Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ R +S P+L+LTAR D+V L +GADDY+ KPF +E+ AR+ AL+RRN Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S I + +D + + + +++I LTA EY I+E L N +VS + ++ ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 D + + S+ I V + LR+KI+ + +I T++G+GY Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGY 218 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP--DIAIVDLGLPDED 58 M++L++ED L LK ++ G+ VD A D +EA Y + + D+ I+D+ LP D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G+SL + R+ + PIL+LTA++ +DK+ L +GADDY+ KPF EE++AR++AL+RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 L V+ + +D + + D I LT E+ I+E L+RN +++SK+ ++ + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + S+ ++ + LRKK++ + + +I T+RG GY Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGY 220 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 130/218 (59%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED+ + L +++ + VD A+D +EA L D+ ++DLGLP+ DG+ Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ RS + P+LVLTAR+ +D+V+ L AGADDY+TKPF + E++ARM+ L+RR+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + + + +D++ + L + I +TA EY ++ T + KV SK L +Y Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ES+ I+ L+ LRKKI Q+ I +RG G+ Sbjct: 181 WEAGIESNAIEFLIYGLRKKI----GQKRIKNIRGLGW 214 >UniRef50_B6QYV6 DNA-binding response regulator n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QYV6_9RHOB Length = 222 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L+ +K ++ VD +D A+ L D+ I+DLGLP +DGL Sbjct: 1 MRVLLVEDERLIADAIKAFLERHEFIVDWVDDGLLAEDALRTGKFDLVILDLGLPGQDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +R R + +PIL+L+ARE+ +++++ L+ GADDY+TKPF +EE++AR +AL+RR+ Sbjct: 61 EFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRALVRRSV 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ +DL +++ N + L + ++ L+ G+VVSK LM +LY Sbjct: 121 GRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDLMEKLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ES+ ++V + ++R+K ++ +I T+RG GY+ + Sbjct: 181 WEENAESNVLEVYVSQIRRKTTSK----LIRTIRGVGYIVD 217 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 138/223 (61%), Gaps = 5/223 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKE-ADYYLNEHIPDIAIVDLGLPDEDG 59 MR+L+VED L LK +++ + VD A D + D L + D+AI+D+ LP G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSY-DLAILDIMLPKMSG 59 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L ++R R + P+L+LTA+++ +D+V L AGADDY+ KPF +E++AR++AL RR Sbjct: 60 LDILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRT 119 Query: 120 SGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +A I PF++DL+ R ++ N E + LTA E+ ++E +RN KV+SK+ ++ ++ Sbjct: 120 GQIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRV 179 Query: 179 Y-PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + PDA++ + ++ + LRKKI ITTVRG GY+F Sbjct: 180 WGPDADV-IGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 132/218 (60%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L ++ G+ V+ A A +A L I I+DLGLPD DGL Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ N S+P L+LTAR+S DK+ L +GADDY+ KPF ++E++AR++ + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +I++ +DL+ +++ ++ +L+ E+ +++ L+ N G++ SK L +LY Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + S+ I+V + LRKK+ P++ I T+RG GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKL----PKDFIKTIRGVGY 214 >UniRef50_C9XWL0 Transcriptional regulatory protein qseB n=1 Tax=Cronobacter turicensis RepID=C9XWL0_CROTZ Length = 245 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 137/221 (61%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +++L++ED+ L + +++ D G V ++A + L+ +P++ ++DLGLPD DG+ Sbjct: 21 VKILLIEDDLDLGNGVRIAFADQGFDVIWVRRKEDALHQLDVCVPELILLDLGLPDGDGM 80 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+ R LP+++LTAR + QD++ L AGADDY+ KPF + E++AR++AL RR+ Sbjct: 81 SLMAYVRQRFKGLPVIILTARGTLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 140 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ I + + + R ++++ ++LTA EY ++ETL+ +V+++ L +L+ Sbjct: 141 GFENEAIEIRGLSLHVPTRRVTVSARHVELTASEYALLETLMLRPDRVLTRGFLEERLFG 200 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E S+ +DV MG LR+KI Y + TVRG GY+ + Sbjct: 201 AKE-NLSNALDVHMGNLRRKIGDGY----VRTVRGVGYVID 236 >UniRef50_Q2IGB7 Two component transcriptional regulator, winged helix family n=5 Tax=Cystobacterineae RepID=Q2IGB7_ANADE Length = 227 Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED + L + + GHQVD A D+ ++D LPD DG+ Sbjct: 1 MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLGAREQATSIAYDVVLLDWSLPDLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R WRS + P+L+LTAR S +KV L AGADDY+ KPF +E++AR++AL RR Sbjct: 61 SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELLARIEALHRR-- 118 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ V +L P +D RR L + LTA EY ++ L R+ G+V+S+ L+ ++ Sbjct: 119 GGATDVSALGPVTLDARRRALVVGARSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178 Query: 181 DAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGY 218 S+ +DV +G LR K++ P I +VRG GY Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGY 217 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 136/220 (61%), Gaps = 2/220 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60 +VL+VEDN L + +K + G+ V A DA++A D + +H D +VD+ LP +G Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHY-DCLVVDVLLPGINGF 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R + +++PIL+LTA ++ DKV LS GADDY+TKPF E++AR+++L+RR++ Sbjct: 66 EFVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSN 125 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + I+ +++ R++++ D V+K++ E+ ++E +RN G V S++ +M +++ Sbjct: 126 ITKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWE 185 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ +S+ IDV + LR K++ I TV G GY F Sbjct: 186 NEKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRF 225 >UniRef50_Q92V41 Putative two-component response regulator protein n=1 Tax=Sinorhizobium meliloti RepID=Q92V41_RHIME Length = 223 Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 127/220 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L + + DAG ++D ++A+ + D+ ++DLGLPD DGL Sbjct: 1 MRLLLVEDSPRLTELINETMHDAGWRLDGVSTLRDAEAAIAAREHDLVLLDLGLPDGDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ R V LP+L++TAR S +++ L AGADDY+ KPFH E+++R +A++RRN Sbjct: 61 QLLQWIRREHVGLPVLIITARGSVDERIAGLDAGADDYLVKPFHHRELLSRCRAMLRRNP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + D + EL+ V+ L E +++E L+R G+VV K L L Sbjct: 121 NAIQPVLEAGALRYDPATAELTCEGAVLPLPPRERSLIEILLREVGRVVPKRRLETALSE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + S+ +++ + R+RK++Q+ I TVRG GYL Sbjct: 181 YGQELSSNALELAVSRVRKRLQSVETGVQIETVRGIGYLL 220 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 10/226 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60 R+L+VED + ++ ++ G A DA EA D L D+ I+DLGLP +DGL Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAF-DLLILDLGLPGQDGL 61 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R SLPI++LTAR+ +DK+ GADDY+TKPF EE++ R++A +R N Sbjct: 62 QVLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNY 121 Query: 121 GLASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 G+ + V+ +DL R++ + D ++L+A E+T+ ET R+ G+V+S++ L+ Sbjct: 122 GVPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLD 181 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ S+ +DV +G LRKK+ E+I TVRG GY +L Sbjct: 182 RVWGYDYDPGSNIVDVYVGYLRKKLG----NELIETVRGMGYRLKL 223 >UniRef50_A1TTN7 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=A1TTN7_ACIAC Length = 224 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 135/218 (61%), Gaps = 3/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ L L+ ++ AG VD D + A + + A++DLGLP +DGL Sbjct: 1 MRVLVVEDDEALARQLREALEAAGFAVDVEHDGEAASFAGSVEAYSAAVLDLGLPLKDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ WR P+LVLTAR W DK+ +AGADDY+TKPF ++EV+ R++A++RR + Sbjct: 61 SVLHDWREAGRGWPVLVLTARNRWSDKLAGFNAGADDYLTKPFLMDEVVLRLRAMLRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ V+ P + D + S++ + ++LTA E+ I+ I + GK++++ + +Y Sbjct: 121 GAAAAVLRAGPLEYDAVQGRFSLHGQALQLTAQEHKILAYFIHHPGKLLTRTDITEHVYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +S+T+DVL+ R+R+K+ PQ + T RGQG+ Sbjct: 181 RDLDPDSNTLDVLISRIRRKLGGA-PQ--LLTERGQGF 215 >UniRef50_A6W2Y0 Two component transcriptional regulator, winged helix family n=2 Tax=Oceanospirillales RepID=A6W2Y0_MARMS Length = 223 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED+ +L + +I GH +D A+ +A+ L D+ ++DL LPD G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R + P++VLTAR+ +D++E+L GADDY+TKP E+ AR +AL+RR+ Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A I ++L ++++ +I L E+ ++E I + G+V+SK++L+ +Y Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E S I++ + RLRK +Q I T+RG GYL E Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDIN--IRTIRGLGYLLE 219 >UniRef50_A3SUZ3 Two component transcriptional regulator, winged helix family protein n=3 Tax=Rhodobacteraceae RepID=A3SUZ3_9RHOB Length = 218 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L LK ++ H V+ EAD L D+ ++DL LPD DGL Sbjct: 1 MRILLIEDEKALARPLKEHLEADRHIVEWFCTLDEADAALRTLSYDVVLLDLQLPDGDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + + R+ + PIL+LTAR+ D++E L+ GADDYV KPF ++EV AR+ + RR++ Sbjct: 61 NFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRSA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +Q + L V+LS + ++ ++LTA E+ + ETL+R ++V K+SL +Y Sbjct: 121 NQFAQTVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E ES+ I+ + RLR K+ +++I T RG GY Sbjct: 181 YGEEVESNAIEAHISRLRTKLG----KDLIATHRGLGY 214 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L ++ ++ G+ VD +D A + LN ++ I+DLGLP DGL Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++R R+ +P+LVLTAR++ D++ L AGADDY+ KPF + E+ AR++AL+RR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D +++S I L E+ ++ L+ G+V+++D L LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ES+ ++V + LRKK +P E+I TVRG GYL + Sbjct: 196 WDEDVESNALEVHIHHLRKKF---FP-ELIRTVRGVGYLVD 232 >UniRef50_B2V7S5 Two component transcriptional regulator, winged helix family n=2 Tax=Sulfurihydrogenibium RepID=B2V7S5_SULSY Length = 220 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 139/222 (62%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L +K +++ G VD + A+ YLN ++ ++DL LP++DGL Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ R+ + P+L+LTA+ S +DK++ L+AGADDY+ KPF +E++AR++AL+RR Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ ++S +VDL + + + + ++LTA E ++ L + +++SK + LY Sbjct: 121 NVSKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +S+ I+VL+ RLRKK+ + + I TV+G GY+ ++ Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPK--GKYIKTVKGLGYILKI 220 >UniRef50_B7S3C0 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3C0_9GAMM Length = 222 Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+L+VED+ L L+ ++ + VD + + D+ I+DLGLP+ G+ Sbjct: 5 LRILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGI 64 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ R++ +P+L+LTAR + DKV+ L +GADDY+TKPF I+E+ AR++ L+RR Sbjct: 65 QVLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRG 124 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 SQ + +D R + E++ LTA EY I+E LIRN G+ VS+ L +Y Sbjct: 125 EGRSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYS 184 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E S+T++V + RLRK+ + + I T+RG GY Sbjct: 185 WGEEVGSNTVEVYISRLRKR----FGSDCIETMRGVGY 218 >UniRef50_B5ZH18 Two component transcriptional regulator, winged helix family n=7 Tax=Alphaproteobacteria RepID=B5ZH18_GLUDA Length = 244 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 124/220 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VE++ H ++ G+ +D EA L + D+A++++ LPD DG Sbjct: 1 MRVLLVENDGGTAHGTSSALRAIGYALDHVATGHEAVEMLRRYDYDLALLEMVLPDIDGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R+ PI+ L++ Q KV SAGADDY+TKP+ E+ AR+QA++RR+ Sbjct: 61 EVLRATRAARRETPIVALSSLGGPQAKVRAFSAGADDYITKPYDAPELAARIQAVVRRSK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ P ++ L RE+++N + LT EY ++E L+ G V++K + + LY Sbjct: 121 GYCQPILHAGPLRLSLDSREVTVNGRPVHLTGKEYLVLELLLLRKGTVLTKYAFLDHLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + E IDV + ++RKK+Q +I TV GQGY+ Sbjct: 181 GMDEPEMKIIDVFICKVRKKLQQAGAGSLIATVWGQGYML 220 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 6/223 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDED 58 MRVL+VED+ L ++ ++ GH +D D + A L+ DI I+DLGLP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL +++ R + P+++LTAR++ D+++ L AG+DDY+TKPF +EE+ ARM+A+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + A +IS +D + ++ + + ++ E+ +++ L+ N G+V+S++ L L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 Y E +S+ ++V + LRK+ A+ +I T+RG GY+ E Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAK----LIRTIRGVGYMVE 228 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 128/220 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LV+ED+ +L L+ + +AGH K + D ++D+ LPD G+ Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ R + + P+L+LTA S D+V L++GADDY+ KPF E++AR+ A+ RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + + P +DL+ R+++ ND + LT E++++E L+R G+VV++ L L+ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++V + RLR KI + + +I TVRG+GY+ Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_Q6MM81 Two-component response regulator KdpE n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MM81_BDEBA Length = 230 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 134/221 (60%), Gaps = 6/221 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLV++D A +R L+V ++ +QV++A ++ PD+ ++DLGLPD GL Sbjct: 7 KVLVIDDEASIRKLLRVSLEANAYQVEEAPSGRDGLAAAASLRPDLVLLDLGLPDMTGLH 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR---R 118 ++ RS +P++VLT ++S DK+ L GADDY+TKPF + E++ RM+ +R + Sbjct: 67 VLSELRSWS-KVPVIVLTVQDSDNDKIAALDGGADDYITKPFSVPELLVRMRVALRHSPQ 125 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 N+ ++++S P +VD+ +++ E++KLTA E+ I++ LI+N KVV+ L+ ++ Sbjct: 126 NAAEKTEMVS-GPLKVDVPGHTVTVEGELVKLTATEFNILKVLIKNKDKVVTHRMLLNEV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGY 218 + + +H + V +G LRKK+ + E+I T G GY Sbjct: 185 WGPNSVEHTHYLRVYVGGLRKKLHIREELAEIIVTEAGVGY 225 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 124/218 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++EDN L L+ ++ GH+VD A D + + D I+D+ LP+ DG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R +P+++LTA++S +D+V L GADDY+TKPF +E+MAR+ ALMRR+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ P +D RE + D + L E+ I+E L+R +V S+D ++ Q++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 S+ +DV + LR K++ ++ TVRG GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGY 218 >UniRef50_A4X7Q0 Response regulator receiver n=46 Tax=Actinomycetales RepID=A4X7Q0_SALTO Length = 334 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 8/224 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED++++ L + DAGH V A EA L PD+ ++DLGLPD DG Sbjct: 109 ILLVEDDSIITAALSRALTDAGHVVRAVGQAAEALRVLTGEPPDLVLLDLGLPDIDGTDT 168 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-NSG 121 +R RS +P++V+TAR S D + +L++GADDYVTKPF E ++AR+ A++RR SG Sbjct: 169 LRMIRSIS-EVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYRSG 227 Query: 122 L---ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 I++ P + R ++++ +KLT EY ++ L G+VVS+ LM ++ Sbjct: 228 TDREGPGAITVGPLVIGRKERRVTMHGNPLKLTRREYDVLTYLAERVGQVVSRRELMTEV 287 Query: 179 YPDAELRESHTIDVLMGRLRKKI--QAQYPQEVITTVRGQGYLF 220 + A + E TIDV + LR+K+ A P+ ++ TVRG G + Sbjct: 288 WRQARIGEEQTIDVHISWLRRKLGETAAKPR-LLHTVRGVGVMM 330 >UniRef50_B9Y2I0 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B9Y2I0_9FIRM Length = 239 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 134/223 (60%), Gaps = 8/223 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+ +R+ + + G D+A A+ A L ++ D+ ++DLGLPD DG+ Sbjct: 7 RILIVEDDPQIRNFISYVLSAEGFASDNAATAQSAMTLLAANVYDLMLLDLGLPDYDGMD 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM----R 117 +IR+ R +PILV++AR+ Q+K + L AGADDY+TKPF E+MAR++ + R Sbjct: 67 VIRKVREWS-EIPILVVSARDQDQEKAQALDAGADDYLTKPFSTTELMARIRVAIRHAFR 125 Query: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 +N+ +V+++ +DL +R++++ + + LT EY ++ +RN+GKV++ L+ Sbjct: 126 QNTAAVQKVLTVRELSLDLEKRQVTLRGQPLHLTPMEYNLLSLFLRNSGKVLTTRYLISA 185 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQ--YPQEVITTVRGQGY 218 ++ ++ + LM LR+KI+ P+ ++T + G GY Sbjct: 186 IWGSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEI-GVGY 227 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 128/219 (58%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV+ED+ + + + + V+ A DA+ YL D+ I+DLGLP DGL Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S + R SLPIL+LTAR++ DKV L AGADDY+ KPF + E++AR++AL+RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D R +++ N + + LT EY I+E L+R+ +++S+ ++M +P Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 DAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGY 218 E+ T+ V + LR K++A P +I TV G GY Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGY 219 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 120/218 (55%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+ L L ++ +QVD D Y + D A++D+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+ + R +LPIL+LTAR +DKVE L AGADDY+TKPF E++AR+++L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +S +DL EL + I+L+ E+ IM L+ +V SKDSL+ +++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ++ + LRKK+ I T+RGQGY Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGY 218 >UniRef50_Q2L1Q6 Two-component response regulator n=3 Tax=Proteobacteria RepID=Q2L1Q6_BORA1 Length = 223 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 130/218 (59%), Gaps = 3/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDN L ++ ++++AGH V D A + D ++D+ LP +DG Sbjct: 1 MRILLVEDNPDLGDAVESKLRNAGHSVQWVRDGLAAVQWGQAEPWDALLLDISLPGKDGD 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++R R+ + P+LV+TAR +DKV++L GADDY+ KPF + E+ AR++ALMRR Sbjct: 61 AVLRELRAAGMESPVLVMTARAEIEDKVDMLDLGADDYLVKPFDLRELEARLRALMRRPG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S V +D + R + +N + ++L E+ ++E L+ G+ V+K+ LM Q++ Sbjct: 121 GQTSSVAMFGNLTLDSANRGVWVNGQPLELGRREFRLLEILLTRQGQTVAKERLMAQVF- 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 DA+ + +++L+ RLR+K+ I TVRG GY Sbjct: 180 DADDVSLNALELLISRLRRKLADASVD--IVTVRGVGY 215 >UniRef50_A0LU58 Two component transcriptional regulator, winged helix family n=16 Tax=Bacteria RepID=A0LU58_ACIC1 Length = 240 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 134/222 (60%), Gaps = 11/222 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVV+D + L++ + G++V A D + A + H PD+ I+DLGLPD DG+ + Sbjct: 4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV 63 Query: 63 I---RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 I R W + +PILVL+AR+ KV+ L AGADDYVTKPF ++E++AR++A +RR Sbjct: 64 IGGVRGWST----MPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRA 119 Query: 120 SGLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +++ I P F +DL+ + + DE I+LT E+ I++ L R+ G++V+ L+ + Sbjct: 120 RPTSAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDV 179 Query: 179 YPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGY 218 + E+H + V M +LR+K++ +P+ + T G GY Sbjct: 180 WGPTYRNETHYLRVYMAQLRRKLEPDPAHPR-YLRTEPGIGY 220 >UniRef50_Q1H1R2 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=Q1H1R2_METFK Length = 223 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED+A+L + AG+ VD AE +A+ + D+ ++D+GLP DG Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R ++ S+P+L+++AR+ ++ L GADD++ KPF + E+ AR +AL+RR++ Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ VDL + S+N E I+L+ E+ ++ L+RN GKVV K++++ L Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++V + RLR K+ A I TVRG GYL + Sbjct: 181 WKTDISLNAVEVYISRLRSKLDAHGIH--IRTVRGFGYLLD 219 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 130/221 (58%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL+VED+ + + +++ G +V AE + + D+ IVD LP+ DGL+ Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 LI R VS P+LVL+A + D+V L AG DDY+TKPF +EE+ AR++ALMRR + Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ + P +DL R ++ + E I L E+ ++E L+R +V+++ L+ ++ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + +++ +DV +G+LR+KI Q +I ++RG G++ + Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRV 256 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED+A +R L + AG+ V A D + A + PD+ ++D+ LPD DG L Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R+ V P+L LTAR +D++ LS+G DDYVTKPFH++EV+ R++A++RR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 ASQVISLPPFQ-----VDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 AS PP + +D S E+ ++L+ E+ ++ + + +V+ K ++ + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ ++ +D + LR+K+ ++ TVRG GY L Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRL 237 >UniRef50_A9BTX9 Two component transcriptional regulator, winged helix family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BTX9_DELAS Length = 221 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ LR + ++Q G QVD D + A DIA++DLGLP G+ Sbjct: 1 MRVLVVEDDPALRLGICRRLQAEGWQVDAVTDGEYALTATATQDYDIAVLDLGLPRRPGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R WR+ +L +L+LTA + Q+++ L+ GADDY+ KPF EE++ARM+A++RR+ Sbjct: 61 EVLRAWRAQRKALAVLILTASDGLQNRLLGLNEGADDYLAKPFEPEELVARMRAIVRRSH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++++ + REL + E + L+ E ++E LI G V K ++ + Sbjct: 121 GGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIISTMSS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +++ + +LR+K+ + I T+RG GY+ E Sbjct: 181 WEANFSANAVEIYILKLRRKLAGAGVR--IVTLRGIGYVLE 219 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D+A L L Q+ + VD A D + A+ +N D I+D+GLPD +G+ Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL +R R ++ PIL+LTA ++ + KV+ L+AGADDYV KPF EE+ AR++AL RR++ Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ +VD + E+ D +++T EYT++E +R+ +V S D+++ L+ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 DAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGY 218 + + + LR+K++A P++ I TV G GY Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGY 245 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 ++V+ ++D+ + L+ + G Q E+A L PD+ ++D+ +P+ +GL Sbjct: 512 LKVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGL 571 Query: 61 SLIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 + R R+++ LPIL L+ + + + + GADD+++K E+ R+ ++R Sbjct: 572 EICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKR 631 Query: 119 NS 120 Sbjct: 632 TG 633 >UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bacteria RepID=C5EI97_9FIRM Length = 234 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L +K+Q++ AG++ D +EA YY +E+ D+ I+D LP DGL Sbjct: 7 MRILLVEDDRELSGTIKLQLEQAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMDGL 66 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R D++ P+++ TA + D+++ L AGADDY+ KP+ E++AR++A+ RR Sbjct: 67 SVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRRPG 126 Query: 121 GL-ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 L + + +D RREL+ + L+ E +ME L+RN G+V+ + ++ ++ Sbjct: 127 RLEQGRAKTFSNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGLILSYIW 186 Query: 180 -PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 PD+E+ E +D + LR++++A I TV G GY E Sbjct: 187 GPDSEV-EDGNLDNYIYFLRRRLKAVGTAAQIKTVHGIGYRLE 228 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 130/219 (59%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + +QVD D ++ Y+ D+ ++D+ LP DG+ Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL + RS++ +PIL+LTAR + QDKV+ L AGADDY+ KP I E+ AR++AL+RR+S Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S V++ +D S ++S N + +KLT EY ++E L+ N + S D ++ +L+ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGY 218 + ++T+ + LR+K++A E I TV G GY Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGY 219 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 10/131 (7%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RV++V+D+ + ++ +Q G Q +D ++ L PD+ ++D+ +P +G+ Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 LIR------RWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 L + RWR LP+L +TA+ Q + +V AGADDY+TKPF E+ R+ Sbjct: 557 LCQIVRNDPRWRG----LPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNR 612 Query: 116 MRRNSGLASQV 126 ++R LA++ Sbjct: 613 LKRTQNLATRT 623 >UniRef50_A1TI70 Two component transcriptional regulator, winged helix family n=6 Tax=Comamonadaceae RepID=A1TI70_ACIAC Length = 237 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 131/229 (57%), Gaps = 11/229 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDE--- 57 MR+LVVED+A+LR ++ + DAGH+VD A EAD++ D ++DL LP + Sbjct: 1 MRILVVEDDAVLRGVMQRSLADAGHRVDVAATLAEADHFWKVQPFDAVLLDLNLPQDAAH 60 Query: 58 -----DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 GL+++R R+ P+LVLTAR+ ++++ L AGADDY+ KPF + EV AR+ Sbjct: 61 ASPVGSGLAVLRAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLAEVEARL 120 Query: 113 QALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 +AL+RR G + S +D R +++ + L A E+ ++ L+ G+VVSK Sbjct: 121 RALVRRTQGTDDRT-SAGTLVLDRRVRRFTLHGQPFDLPAREFEVLWELMTPPGRVVSKR 179 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 SL +L ++ + ++ + RLRKK+Q I T+RG GY+ E Sbjct: 180 SLSDKLSDFDDMLGDNALEAFISRLRKKLQGSGAG--IRTLRGLGYMLE 226 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+LVV+D+ +R L+ + G+ V+ A D EA + PD ++D+ +P DGL Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 + R+ RS LPILVLTAR+S ++V L AGADDY+ KPF +EE++ARM+AL+RR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 119 ---NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 + S ++ +D RE++ I LT E+ ++E LI N +V+++ ++ Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ + ++V +G LR+K +A+ +I TVRG GY+ Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >UniRef50_C4WQP6 Two-component response regulator n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WQP6_9RHIZ Length = 280 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDG 59 MR+L+VED + + +++ GH V A D + D +N D+ ++D+ LP DG Sbjct: 56 MRILLVEDTIDIAFAIASKLEKEGHSVTTAYDGVQGEDLAVNGSF-DLIVLDINLPGRDG 114 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +++R R +S P+LV+TAR DK+++L GADDY+ KPF + E+ AR++A+ RR+ Sbjct: 115 FAILRSMREQSLSCPVLVITARNQIADKIDLLELGADDYLVKPFDLRELFARIRAVARRH 174 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G+A V+ + ++L++R + D + E+ ++E L V KD L+L+L+ Sbjct: 175 MGVAQPVLRIGELSINLTQRSVMQGDGPLDFGRREFDVLEMLATRFNVTVPKDMLVLKLF 234 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + + I++L+ R+RKK++ + I T RG GYL L+ Sbjct: 235 GHEDTGTPNAIELLVSRVRKKLEHSTVE--IVTQRGVGYLLRLK 276 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 135/231 (58%), Gaps = 16/231 (6%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVV+D+ LR L+ ++D G V A DA + D L + + ++D LP EDGLS Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + RR R +++ PI++LTAR S D++ L AGADDY+ KPF+ E++AR++A++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 --SGLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 G SQ V+S + +DLS R L+ +V+ LT E+ +++ L+++ + +++D L Sbjct: 142 EVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQ-----AQYPQEVITTVRGQGYLF 220 M +IDV + RLR+ I+ A+Y I TV G GY+F Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARY----IQTVWGIGYVF 248 >UniRef50_P21866 KDP operon transcriptional regulatory protein kdpE n=92 Tax=Bacteria RepID=KDPE_ECOLI Length = 225 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED +R L+ ++ G +V +AE + PD+ I+DLGLPD DG+ Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 IR R ++P++VL+AR DK+ L AGADDY++KPF I E+ AR++ +RR+S Sbjct: 64 IRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122 Query: 123 AS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ VDL+ R + +E + LT E+ ++ L+ N GKV+++ L+ Q++ Sbjct: 123 TAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWG 182 Query: 181 DAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLFEL 222 + SH + + MG LR+K++ P+ IT G GY F L Sbjct: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITET-GIGYRFML 225 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L +K +++ +VD A D + ++ D+ ++D+ LP +G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R P+L+LTA S DK+ AGADDY+ KPF E+MAR++AL +R+S Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G+ + V+ + ++DL+ + D+ I+LTA E+ +++ L+RN G+VVS+ + ++ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ IDV + LRKKI +P ++I TV G GY+ + Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLK 228 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 138/219 (63%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL+VED+ +R LK+ + +++ D E+ K+A YL ++ D+AI+DL LP +G Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +++ RS LP+++L+A++ DK+ L GADDY+TKPF + E+ AR+++L+RR Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR- 121 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S ++I + +DL +R ++I +E ++LT E+ +++ L +N G+ VS++ L+ Q++ Sbjct: 122 SKKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIW 181 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ES T+DV + LRKK+ +Y I +VR GY Sbjct: 182 GYDFIGESRTLDVHINSLRKKLGNEYAH-WIQSVRQVGY 219 >UniRef50_B0ABP9 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABP9_9CLOT Length = 223 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLVVEDN L + ++ + + + D +EA Y + ++I D+ ++DL LP+ G+ Sbjct: 1 MKVLVVEDNIKLLKSISDELNNH-FETESCSDGEEALYMIEQNIYDLIVLDLMLPNLSGI 59 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R + P+L+LTA+ES DKV GA+DY+TKPF++EE++AR+ A++R N Sbjct: 60 EILKCMRDKFIDTPVLILTAKESLNDKVSAFEIGANDYLTKPFYMEELVARIYAILRTNG 119 Query: 121 GL-ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + A I +DL++R + I DE I+L ++ ++E L+ N G ++ K+ + +++ Sbjct: 120 KMQAKNTIDFKDLHLDLNKRRVFIKDEEIELQNKQFNLLEYLLLNKGSILLKEQIYDRVW 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++V + LRKK+ + I T R GY+F+ Sbjct: 180 GIDSDVTIEIVEVYISHLRKKLSKYGYDKCIKTKRKVGYMFD 221 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ LL L + Q G+ D A+ A+ L + ++DLGLPDEDGL Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R R +LP+L+LTAR++ DK+ L GADDY+ KPF +EE+ AR++AL+RR++ Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +++ RR++ + E + LT EY ++ L+ G V ++ L +Y Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++T++V + LR K+ + I TVRG GY+ Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML 216 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + + ++ +G VD A + + + +AI+D+ LP DGL Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I R + PI++L+A+ S +D+V L G DDY++KPF E++AR+QAL+RR++ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + +++ ++L RE+S + ++L E+ ++E +RN GKV+SK +M ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ +DVL+ RLR KI Y ++++ T+RG GY+ + Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLK 222 >UniRef50_C7RUD8 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=C7RUD8_9PROT Length = 235 Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VVED A +R +K+ ++ G QV +A+ K D+ ++DLGLPD DG+ Sbjct: 8 IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 IR R+ +P+LVL+AR + DKV L AGADDY+TKPF E++AR++A +RR S Sbjct: 68 IRDLRAWS-EIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRS 126 Query: 123 A--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A + + +VDL+RR + + + LT EY ++ LI N V++ L+ ++ Sbjct: 127 AGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWG 186 Query: 181 DAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 + +SH + V MG LRKKI+ P+ + T G GY F Sbjct: 187 PGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEA-GVGYRF 227 >UniRef50_B8IU63 Two component transcriptional regulator, winged helix family n=20 Tax=Proteobacteria RepID=B8IU63_METNO Length = 225 Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 120/218 (55%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED + + +++ GH VD D D L D+ I+D+ LP DG Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++R R+ P+LVLTAR D+V L GADDY+ KPF E+ AR++AL+RR+S Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A I+ +D + R S+ + + LT E+T++E L G++ K L+ +L Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E + ++ ++ RLR+K+ + I T+RG GY Sbjct: 181 FEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGY 218 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 130/218 (59%), Gaps = 2/218 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV+ED + +++++ G+ + A D E PD+ I+DL LP DGL + Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R + PI++LTA++ QDKVE L +GADDY+ KPF IEE++AR++A +RR + Sbjct: 67 ARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 + + + ++L RE+ ++L+A E+ ++E L RN GKV S+ + +++P+ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWPEY 185 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 S+ +DV +G LR+K++ + +I TVRG GY+ Sbjct: 186 -TGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEAD--YYLNEHIPDIAIVDLGLPDED 58 M++L+VED A+L + ++ +G+ VD A D KEA + +NE+ D+ I+DL LP D Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEY--DLIILDLNLPKMD 58 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G+ ++ + R + + IL+L+AR + DK+ L GA+DY+ KPF +E+ AR++ L+RR Sbjct: 59 GIEVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRR 118 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + S +IS +D S++ + ++ E+I +T EY I+E L+ + KV+S + L+ + Sbjct: 119 SFSQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHV 178 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYL 219 + S+++ + LRKKI + EVI T+RGQGY+ Sbjct: 179 WDSETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYI 220 >UniRef50_B5JZG0 Two-component transcriptional regulator, winged helix family n=1 Tax=Octadecabacter antarcticus 238 RepID=B5JZG0_9RHOB Length = 221 Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 136/220 (61%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED A + + +Q G+ + A D ++ AI+D+GLP DG+ Sbjct: 1 MRILIVEDEARIADLIADVLQSEGYIAEIASDGEDGWEKGGTESYSAAILDIGLPRMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R WR V+ P+++L+A+ SW ++VE + AGADDY+ KPF +EE++AR++AL+RR S Sbjct: 61 SVLRNWRKEGVNFPVMLLSAKSSWNERVEGIDAGADDYMVKPFQMEELLARLRALLRRTS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +S+ Q+DL + +++ IK+T E+ ++ L+ + G+VV++ L +Y Sbjct: 121 TQKMTALSVGGLQLDLLQMRITLEGRRIKVTPLEFRLLSYLLHHKGEVVAQSVLAENIYF 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +S+ I+VL+GRLR+K+ + ++I T RG GY+ Sbjct: 181 RDQEPDSNAIEVLIGRLRRKLGS----DLIETKRGFGYVI 216 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 129/221 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED +L ++ VD + ++A Y+N D+ ++D+ +P DG+ Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S + + R++ + P+L+LTA++S QDKV L+ GADDY+ KPF +EE+ AR+ AL RRN+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A I + P +++ +R + + E I LTA E+ ++ L N V+S+ ++ ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ IDV + LRKKI ++I TVRG GY+ + Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLK 221 >UniRef50_A9GMJ5 Two-component response regulator n=3 Tax=Bacteria RepID=A9GMJ5_SORC5 Length = 256 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LV+ED + L+ + + GHQV ED A L + D+ +VD LPD DGL Sbjct: 34 MRILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPDGDGL 93 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 LIR R + P + LTAR+ ++VE L GADDY+ KPF EE++AR+ A+ RR Sbjct: 94 DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARIAAVSRRAG 153 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S+ + + +DL+ + I LTA E+ ++ L + G+V+S+ L+ +++ Sbjct: 154 --RSERVEVADLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWD 211 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++ +DV + LR K+ + + +I TVRG GY+ E R Sbjct: 212 VGHDPGTNVVDVAISALRAKVDRGFARPLIHTVRGVGYVLEER 254 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 8/223 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ L+ ++ ++ AGH+ A D EAD H PD+ ++D LP DGL+L Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RWR + P+L+LTAR +V L+ GADDY+ KPF +E++AR+QAL+RR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR--AY 131 Query: 123 ASQVISLPP---FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 AS P VD + R++ ++ I L A E+ ++ L + G+V S+D L+ +++ Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191 Query: 180 PDAELRESH-TIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLF 220 + H TIDV + +LR+K++ + V + TV G GY F Sbjct: 192 -GYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >UniRef50_Q0K8J0 Response regulator, OmpR-family n=10 Tax=Proteobacteria RepID=Q0K8J0_RALEH Length = 231 Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 13/226 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED +R ++ +QD G V +AE + PD+ I+DLGLPD DG+S+ Sbjct: 9 VLLVEDEPHIRRFVRAALQDEGCTVHEAESLQRGLIEAGTRQPDLVILDLGLPDGDGVSM 68 Query: 63 I---RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 I R W +P+LVL+AR +K+ L AGADDY+TKPF + E++AR++ L RR+ Sbjct: 69 IGDLRTW----TEVPVLVLSARTGEAEKIRALDAGADDYLTKPFGVGELVARLRVLQRRH 124 Query: 120 SGLASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 +Q ++ VDL+ R+++ E + LT E+ ++ L+ + GKV++ L+ Sbjct: 125 VRAGAQGRAQVAFGEIAVDLANRQVTRAGEPVHLTPIEFRLLAVLLAHRGKVMTHRELLR 184 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQA--QYPQEVITTVRGQGYLF 220 +++ + S + V MG LR K++A P ++T + G GY F Sbjct: 185 EVWGPSHADSSQYLRVYMGHLRHKLEADPARPAYLLTEI-GVGYRF 229 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ L+V +++AG VD A D + A+ L + I+DLGLP G+ Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ R +P+LVLTA+++ DKV L AGADDY+ KPF + E+++R +AL+RR+ Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S++I VD + +S + + LTA E+ ++ L+ + G + + LY Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ES+ I+V + LRKK+ +VI TVRG GY+ + Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGG----DVIRTVRGFGYVVD 226 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 132 bits (332), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 123/218 (56%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L+ +K + G VD ++ L D I+DL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R WR P+L+LTAR++ ++VE L GADDY+ KPF + EV AR++ALMRR + Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + +D +R ++ E + L E+ ++E L+RN G+V+S+ + +LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E S+ ++V + LR+K+ + + I TV G GY Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGY 214 >UniRef50_Q47EV7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=1 Tax=Dechloromonas aromatica RCB RepID=Q47EV7_DECAR Length = 229 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ALL L ++ +G+ VD A D AD L D+ I+D+GLP DG Sbjct: 1 MHILLVEDDALLADGLARALRHSGYIVDTANDGLSADSLLANEAYDLVILDIGLPGLDGC 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++R R+ P+LVL+AR + +++V +L GADDYV KP E+ AR++AL+RR Sbjct: 61 EVLQRLRTRRQQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIRRRL 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + L ++D + +ND ++L A E+ +E L ++VSK+ L+ LY Sbjct: 121 GEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQALYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + I+ L+ RLR K++ I TVRG GY E Sbjct: 181 WQDEITPNAIEKLVSRLRVKLEE--AGITIRTVRGLGYYLE 219 >UniRef50_C3NYL4 DNA-binding response regulator n=36 Tax=Vibrionaceae RepID=C3NYL4_VIBCJ Length = 247 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ LL ++V + G+ VD E L I+DL LPD DGL Sbjct: 30 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ R +LP+++LTAR+ D+V+ L GAD+Y+ KPF +EE++AR++ ++RR+S Sbjct: 90 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A ++IS+ + LS++E+ + +KLT EY I+ +L+ G+V+SK+ L L+ Sbjct: 150 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E + I+V + LRKK+ P ++ VRG GY+ E Sbjct: 210 WDEGSSDNAIEVHIHNLRKKL----PDNLVKNVRGVGYMIE 246 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ L L+ +++ G VD A D +EAD D+ ++D+ LP DGLSL Sbjct: 1 MLLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSL 60 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP-FHIEEVMARMQALMRRNSG 121 ++RWR++ V+ +L+LTA+ DKV L GADDY++K +EE+ AR++AL+RR Sbjct: 61 LKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ 120 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 V+ ++D + R + I LT EY ++E L + GKVV++ + LY + Sbjct: 121 QKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + S+ +DV + LR K+ ++ ++I T G+GY+ Sbjct: 181 YDENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYML 219 >UniRef50_D2R313 Two component transcriptional regulator, winged helix family n=32 Tax=Bacteria RepID=D2R313_9PLAN Length = 235 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 131/225 (58%), Gaps = 12/225 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG--- 59 VL++ED A +R L+ + G+++ +A A E PD+ ++DLGLPD DG Sbjct: 13 VLIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGLPDRDGQEV 72 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L +R W ++ PI++L+AR+ K++ L GADDYVTKPF + E++ARM+ +R + Sbjct: 73 LEQLREWYTS----PIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHS 128 Query: 120 --SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 +G + ++ +VD + R + E + LT EY ++ T+I++ GKV++ L+ + Sbjct: 129 HRTGTEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLRE 188 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQA--QYPQEVITTVRGQGYLF 220 ++ + +E+H + V + LR+KI+ PQ ++T +G GY F Sbjct: 189 VWGPQDSQENHYLRVFVAGLRRKIEVDPARPQYILTE-QGVGYRF 232 >UniRef50_A5FFW8 Two component transcriptional regulator, winged helix family n=3 Tax=Flavobacteriales RepID=A5FFW8_FLAJ1 Length = 220 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 2/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED + L+ +++ G+Q+ A D + H D+ ++D LP +GL Sbjct: 1 MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L + R D PI+ LTA+++ Q+ +E L AGA+DY+ KPF EE++ R++ R + Sbjct: 61 DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFRNKA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++++L VDLS+ + NDE I LT E+ ++ LIR GKV +++ ++ ++ Sbjct: 121 --TDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 ++ IDV M +RKK+ + ++ I T+RG GY+ Sbjct: 179 INFEYDTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGYI 217 >UniRef50_C0C014 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0C014_9CLOT Length = 237 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+L++EDN L +K ++ G+ D A D + D +++ D+ ++DL LPD DG Sbjct: 16 VRLLIIEDNTELADLMKGKLSGFGYVCDVAYDGESGDLKASDNDYDVILLDLNLPDRDGF 75 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ WRS +S P+ ++TAR + +V+ L G+DDY+TKPF E+ AR+QA++RR Sbjct: 76 ELLENWRSQGISAPVFIVTARGELEQRVKGLQLGSDDYITKPFEFTELDARIQAVIRRFR 135 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ VI + +D + R ++++ + L+A E+ I+E L ++VS + L +Y Sbjct: 136 GRANPVILIEELSLDPATRRVTLDGREVPLSAKEFDILEYLASCYPRIVSNEELAEHVYD 195 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + S I V M ++KK++ ++ +G+GY L Sbjct: 196 ENFDPFSGVIRVHMANIKKKLKMG-DTSILRNEKGKGYYLCL 236 >UniRef50_Q7CWZ7 Two component response regulator n=2 Tax=Alphaproteobacteria RepID=Q7CWZ7_AGRT5 Length = 226 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDN +L L ++ +G+ VD D AD + D+ I+DL LP+ DG+ Sbjct: 1 MRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R RS +L+LTAR + ++KV+ L GADDY+ KPF I E AR++ L+RRN+ Sbjct: 61 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GL S +S DL+ R S + + + A E ++E L GKVV+K++++ L Sbjct: 121 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ I+ + RLRK++ + T RG GY E Sbjct: 181 FDDDISANAIEQYVSRLRKRLAPH--GLTVKTARGIGYYLE 219 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 13/228 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+A + + AGH VD E+ +EA + D+ + D +PD DGL Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S +R R ++ P+++LTA + +D+VE L AGADDY++KPF + E++AR+ AL RR Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 G---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G + +S ++DL + + + + L E+ ++E L+R+ G++ ++ L+ + Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 178 LY-----PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ P + E+H M RLR KI+ + E I T+RG GY+F Sbjct: 181 VWDINFEPSTSVVETH-----MSRLRNKIEKPFDAEYIRTIRGSGYMF 223 >UniRef50_UPI0001AEBE73 response regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEBE73 Length = 231 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 132/219 (60%), Gaps = 5/219 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+A +R L + + G+ +A +EA N+H PD+ I+DLGLPD +G + Sbjct: 5 ILLVEDDANIRQMLSIALGAEGYLCVEAASVREALSLFNQHRPDLVILDLGLPDGEGSEV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++R R + LP+LVL+AR+ DKV++LS GA+DYV+KPF I E++ R++ L+R + + Sbjct: 65 LKRIRESS-RLPVLVLSARDQELDKVDLLSRGANDYVSKPFGIRELVTRVKVLLRDFNPV 123 Query: 123 ---ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + +D++ R L + EVI L E +++ L + G +S+ L+ +++ Sbjct: 124 VEPTSPTRQIGKIALDITERRLLVEGEVIALAPKEVQLLDELTKQPGAFISQQELLRRIW 183 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ++H I VL+ +LRKKI + +++I T+ QGY Sbjct: 184 GLHHSEDTHYIRVLVRQLRKKIDP-FEKDLIETMPKQGY 221 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL++ED + +K +Q+ ++ + KEA + D I+DL LPD G Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--N 119 + +R R +PIL+LTA+ D++ L GADDY+TKPF +E++AR++A+MRR N Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 120 SGLASQVISLPP--FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 GL + +I L +VDL E DE+++LTA E+ ++ I+N+GKV S+D L+++ Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + TIDV + LR KI+ +Y + I TV G GY F Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYYK-YIVTVYGVGYRF 227 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 131/217 (60%), Gaps = 4/217 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED++ + + + ++ G VD DAK+ + L + + D ++DL LP DG++ Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +++ WR+ + P+L++TAR++ ++V L+AGADDY+ KPF ++EV+AR+QALMRR+ G Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + +++S ++++LT E I+E ++ + ++ S+ SL +LY Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ES+ I+V + LRKK+ + I T RG GY Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDF----ILTKRGIGY 215 >UniRef50_A6WZ81 Cell cycle response regulator ctrA n=152 Tax=cellular organisms RepID=CTRA_OCHA4 Length = 232 Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL++ED++ + +++ ++ V + +E + DI ++DL LPD G Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R + V PIL+L+ +DKV L GADDY+TKPFH +E++AR+ A++RR+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A VI+ V+L + + ++ + + LT EY ++E L G ++K+ + LY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGYLF 220 + E IDV + +LRKK+ A Q I TV G+GY+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVL 221 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDE--D 58 MR+L+VED L + +++ G+ +D ++ E + D I+D +P + D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL ++++ R + +S P +VLTA K+ L AGADDY+ KPF I+E++AR++A++RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 ++ + +D + R + +++ I LTA EY +++ L++++G+ +SK+ +M + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YP-DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + DA++ +T++ + LRKKI +Y + I TVRG GY E Sbjct: 181 WNFDADIL-PNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 135/224 (60%), Gaps = 9/224 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LV ED +R + + ++ AG++V +AE+ +EA Y + DI ++D+ +P+ DG + Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + RS D + I++LTAR +DKV LS GADDY+ KPF E++AR+Q+L+RR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 122 L-----ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 L +++S PF++DL + + +++T EY ++ I+N +V+S+D L+ Sbjct: 123 LRRRKQPRELVS-GPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLD 181 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQE--VITTVRGQGY 218 ++ + + T+DV + RLR+KI+ + P E I T+ G GY Sbjct: 182 AVWGENYFGDRKTVDVNIRRLRQKIE-ENPAEPQFIETLWGHGY 224 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED++ + + + G+ + + D ++ L D A++DL LP DGL Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLI R R + I+VL+A+ S +DKV L +GADDY+ KPF I E++AR++A++RR S Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 121 GLAS-QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 A + + ++DL I L E+ ++E L+RN G+ ++K L+ +L+ Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +++ +DVL+ RLR K+ + ++I T+RG GY+F Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVF 227 >UniRef50_Q03V75 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=17 Tax=Lactobacillales RepID=Q03V75_LEUMM Length = 233 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 134/224 (59%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +++L++ED+ L ++ +QD ++ D + ++ E D+ I DL LP E GL Sbjct: 5 IKILLIEDDVNLADNVVGFLQDFA-DINAVTDGLDGEFEAQEAPYDLIISDLMLPGETGL 63 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 LI+ R+NDV P+L+LTA+ S DK+E + GADDY+TKPFH EE++ R++AL+RR S Sbjct: 64 ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRR-S 122 Query: 121 GLASQ--VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G+ S+ +++ ++L R + ++ + +KL E+ I+ L +N +V++D + ++ Sbjct: 123 GVYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRV 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + + +++ + LR+K++A +I T+R G++ E+ Sbjct: 183 WGIDSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGFILEV 226 >UniRef50_C7H2X2 KDP operon transcriptional regulatory protein KdpE n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2X2_9FIRM Length = 243 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 6/208 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +VLVVED A + ++ ++ G+Q A H PD+ I+DLGLPD DGL Sbjct: 8 FKVLVVEDEANICSFIETLLETNGYQALVANTCAMGQTLFTSHNPDLIILDLGLPDRDGL 67 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 LIR R ++ PI+VL+AR + QDK+E L GA+DY+TKPF E++AR++A +R N Sbjct: 68 ELIRFVRQKFLT-PIVVLSARTTEQDKIEALDLGANDYITKPFGTGELLARVRAALRTNR 126 Query: 120 ----SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 G+ + +++ RR++ ++ IKLT EY I+ L + G+V++ +++ Sbjct: 127 FGVLGGMPGGLFRAQGLEINYERRKVFVDGAEIKLTQTEYNIVAFLSEHAGRVMTYAAIV 186 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQA 203 ++ D + + + V M +RKK+ + Sbjct: 187 RAIWGDTDCGSTKKLQVNMANIRKKLGS 214 >UniRef50_C8W872 Two component transcriptional regulator, winged helix family n=2 Tax=Atopobium RepID=C8W872_ATOPD Length = 224 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+ ED + + ++ + VD D A L ++ DIAI+D+ +P G Sbjct: 1 MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASALLALESNMYDIAILDVMMPKMSGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ RS +++PIL+LTA+ DKVE L GADDY+TKPF E++AR++AL RR+S Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSI--NDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V+ +D + L+ + + ++L+ E I+E +I N+G+++++D L +++ Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + E + ++V M RKK+ I VRG GY ELR Sbjct: 181 WGFESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGY--ELR 223 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 131/221 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+ LR + +++ VD D + A + D I+D+ +P DG+ Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R R+ +++PIL+LTAR++ ++++ L AGADDY+TKPFH E+ AR++AL+RR S Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +++ ++D ++ + ++ LTA E+T++ L R+ G++VS+ L ++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ IDV + RLR+K+ + ++ T RGQG L Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLS 221 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 134/228 (58%), Gaps = 15/228 (6%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+ + L + ++ AG+Q D EA L E P + ++D+ LP E+G+ Sbjct: 5 KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIG 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ R + +P+++L+AR+ DKV L GADDY+TKPF + E+MAR+ A++RR Sbjct: 65 VLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRR--- 121 Query: 122 LASQVIS----LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + +Q IS +V+L R + E IKLT E+ ++ L++N +V S++ L+ Q Sbjct: 122 VGTQEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELLRQ 181 Query: 178 LYPDAE--LRESHTIDVLMGRLRKKIQA--QYPQEVITTVRGQGYLFE 221 ++ + LR T+D + +LR K+++ + P+ I TVRG GY F+ Sbjct: 182 VWKQSSGTLR---TVDNFVAQLRSKLESDPENPRFFI-TVRGSGYRFD 225 >UniRef50_B2TDT5 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=B2TDT5_BURPP Length = 227 Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 124/218 (56%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + L ++DA + VD D + + ++DLGLP G+ Sbjct: 1 MRILLVEDDLQIGQSLLRALKDADYSVDWVRDGVAGRDAMANAEYTVVLLDLGLPGLSGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ R+ ++P+L+LTAR+ +V+ L GADDY+ KPF + E++AR++A++RR + Sbjct: 61 ELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRKA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + +DL +R L+ N L+A E+ +M + G ++S++ L +LY Sbjct: 121 GYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ES+ +DVL+ +RKK + VI VRG G+ Sbjct: 181 WGKEVESNAVDVLIHSVRKK----FGLSVIRNVRGLGW 214 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 129/230 (56%), Gaps = 11/230 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +++VEDN L+ +++ +Q V A EA L +H+P + I+D+ L D +G L Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 63 IRRWRSND--------VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQA 114 R R+ +PIL+L+AR +D++E AGADDY+TKPF E+ R+++ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 115 LMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ++RR+ GL+ I + Q+D RRE+ +N ++LT E+ ++ L + G+V S++ L Sbjct: 131 ILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREEL 190 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQ---AQYPQEVITTVRGQGYLFE 221 + +++ + + + T+DV + RLR K++ +I+T G GY E Sbjct: 191 LERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLE 240 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED+ +R L + AG+ V A+ + A + PD+ ++D+GLPD DG ++ Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R+ V P+L LTAR +D++ LS+G DDYVTKPFH++EV+ R++A++RR+ Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 123 ASQVISLPP-----FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 S PP ++D E+ I+L+ E+ ++ L+ +VV K ++ + Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ +D + LR+KI PQ +I TVRG GY Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDRFEPQ-LIQTVRGVGYCL 236 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 132/229 (57%), Gaps = 8/229 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDED- 58 M+VL++ED+ L ++ + +AG+ A DA + + + D+ ++DL LP D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 G+++ RR R D ++PIL+LTA + + KVE L AGADDY+ KPFH+ E++AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 QALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 +AL+RR+ + V+++ +D S R + I+LTA E+ ++E L+RN G++VS Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L+ + S+ + + LR+K+ A +VI T RG GY+ E Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229 >UniRef50_UPI0000164CF1 response regulator n=1 Tax=Deinococcus radiodurans R1 RepID=UPI0000164CF1 Length = 243 Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 29/244 (11%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDED-- 58 MR LVVED +R L +++AG+ VD+A A EA D +VD+GLP+ Sbjct: 1 MRFLVVEDELDIRRPLVANLREAGYAVDEAGSAAEARELAGSFPFDALMVDVGLPEGPLA 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G L+R R+ + P+L LTAR+S D++ L AG DDY+ KPFH+ EV AR++AL+RR Sbjct: 61 GFDLVRDLRAAGKASPVLFLTARDSVTDRITGLDAGGDDYLVKPFHLGEVQARLRALVRR 120 Query: 119 N----------------------SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYT 156 SG AS L ++D + R + + E + LTA E++ Sbjct: 121 GRAEAQSARSWRDCGWTGQAAPCSGAASG-WRLARLRLDWTSRAVFRSGERVALTAKEFS 179 Query: 157 IMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQ 216 ++E L + G+V ++D L+ +++ ES+ +D + LR+K+ EV+ T+RG Sbjct: 180 LLEVLASHPGRVYTRDELIDRVWDGRFDAESNVVDTYVRNLRRKLG----DEVVQTMRGV 235 Query: 217 GYLF 220 GY F Sbjct: 236 GYSF 239 >UniRef50_A1B2L3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A1B2L3_PARDP Length = 227 Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR L+VED + L ++ AG V+ D + A + D+ ++DL LP DGL Sbjct: 1 MRALIVEDEPRIAADLDRALKAAGFLVETVADGETAWFRGGTEDYDLIVLDLNLPRLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++RWR+ P+L+LTAR +W ++VE + AGADDY+ KPF +EE++AR +AL+RR Sbjct: 61 TVLKRWRAEGCETPVLILTARGAWTERVEGIDAGADDYLPKPFRMEELIARARALVRRAG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + + VDL+R +I+ + +T E ++ L N ++V L+ LY Sbjct: 121 GRGNATQQVGRLTVDLNRMTAAIDGIPVAVTPLELRLVSYLALNRDRIVPPTELLEHLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 D E RE + I+ ++ RLR+K+ VI T RG GY E Sbjct: 181 DDESRELNAIEAIITRLRRKLGPG----VIGTRRGFGYHLE 217 >UniRef50_A7TD94 Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7TD94_NEMVE Length = 159 Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 102/159 (64%), Gaps = 1/159 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + G+ VD D ++A Y D+ I+DLGLP + GL Sbjct: 1 MRLLLVEDHVPLADELLAGLARQGYAVDWLADGRDAAYQGATEPYDLIILDLGLPGKPGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ WR+ ++ P+L+LTAR SW +++E L AGADDY++KPFH EE+ R+Q+L+RR Sbjct: 61 QVLQEWRAGGLTTPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQSLLRRAH 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIM 158 GLA+Q + Q+D R+ + N E ++LTA E+ ++ Sbjct: 121 GLANQPQLEAAGLQLDEGRQSVKRNGEEVQLTAAEFRLL 159 >UniRef50_B8HC02 Two component transcriptional regulator, winged helix family n=12 Tax=Actinomycetales RepID=B8HC02_ARTCA Length = 224 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 9/224 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL+VED+ + L + AGH+ A+ AD L ++ ++DLGLPD DGL Sbjct: 3 MEVLIVEDDDAMAGALAAGVATAGHRTRRV--ARGADALLAHRDFEVILLDLGLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 ++R+ R PIL+LTAR+ + V L +GADDY+ KP + E++AR++A+ RR Sbjct: 61 DVLRKLRQI-TDCPILILTARDDERSVVLGLRSGADDYLVKPVKLVELLARIEAVTRRAG 119 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 +G I L +DL RR S + V+ LTA E+ ++ L R+ G VV+++ ++ Sbjct: 120 RRTGTVPDTIVLGDLDIDLGRRIASRDGNVLPLTATEFELLALLARHAGSVVTREQILDA 179 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L+ DA L S ++DV + LR K+ Q P +I VRG GY E Sbjct: 180 LWGDAFLASSRSLDVHLTGLRAKL--QMPGFII-NVRGVGYRVE 220 >UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnospiraceae RepID=C2KX66_9FIRM Length = 228 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 131/221 (59%), Gaps = 3/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED +L +K+ ++ A ++VD A D +EA Y I D+ I+D+ +P +G Sbjct: 1 MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R LPIL+LTA+ +D++E L GAD Y+TKPF E++A + AL+RR Sbjct: 61 QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQ- 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S +DL ++LS +KL+ E+ +M L++ +++SK+ ++ +++ Sbjct: 120 GQEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWG 179 Query: 181 -DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 D++ E+H ++V +G LRKK++ + I + RG GY Sbjct: 180 YDSDAVENH-VEVYVGFLRKKLRLLESRVSIQSRRGLGYFL 219 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 14/227 (6%) Query: 2 RVLVVED----NALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDE 57 +VL+VED N +L H LK + G+ KEA+ +LN +PD+ ++DL LPD Sbjct: 4 QVLIVEDDKSINDILFHTLKAE----GYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDG 59 Query: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 G + + ++PI++LTA+ DKV L GADDY+TKPFHI+EV +R++A+ R Sbjct: 60 SGFDFCKDINAK-YTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFR 118 Query: 118 RNSGLASQ----VISL-PPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 R AS+ I + +++ + R + NDEVI+L EY ++E ++N KV S++ Sbjct: 119 RIEKSASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSRE 178 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 L+ ++ + + T+D+ + R+R K+ VI TV G GY+ Sbjct: 179 QLIDNIWEFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYM 225 >UniRef50_C4L2J9 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2J9_EXISA Length = 221 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + +K +DAGH+V A D + D AIVD+ LP DG Sbjct: 1 MRILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLPGLDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L RR ++ + +P+++LTA + W+DK + GADDYVTKPF EE++ R+QA+ RR Sbjct: 61 ELCRRLKAT-LDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQ 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A+ I P ++DL E+++ ++ L E+ ++ L G+V ++ L+ ++ Sbjct: 120 RSAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + T+DV + RLR + +P I TVRG GY E+ Sbjct: 180 FDFEGDERTVDVHIKRLRNRF--DHPALTIRTVRGVGYALEV 219 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 141/226 (62%), Gaps = 7/226 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+V+D++ L HL+ ++ ++++ AE+ ++A + E D+ ++D+ LP DGL Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R ++ P+L+LTAR +D+V+ L GADDY+ KPF + E+MAR++AL+RR+ Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRD- 124 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +++ P ++ R +++++ I LT+ E++I+E L+ N G VS+ ++ ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 DA--ELRESHTIDVLMGRLRKKIQA---QYPQEVITTVRGQGYLFE 221 + S+ +DV + LRKKI +YP +I T+RG G++ + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPP-IIRTIRGIGFIID 229 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED + L ++ AG+ VD A A +++ D+ ++D LPD DGL Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + RS P+L+L+AR + D+V+ L GADDY+ KPF E++AR++AL+RR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + + +D RR+++ E I L E+ I+E ++RN G+ +S+ ++ ++ Sbjct: 121 PTPER-LQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + LR KI ++ Q++I TVRG GY+ E Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >UniRef50_A4JRJ8 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=A4JRJ8_BURVG Length = 241 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDNA L L + G VD A D+ ++DLG+PD +G+ Sbjct: 1 MRLLLVEDNARLASLLADGLAKEGFAVDWCATLDLATRAFASTPYDLVLLDLGMPDGNGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + ++ R ++P+L++TAR S D+V L +G DDY+ KPF + E+ AR +AL+RR Sbjct: 61 TFVKALRRGGHTVPVLIITARSSLDDRVIGLDSGGDDYLVKPFELRELTARCRALLRRPG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +++ ++D + RE+ + V+ + E ++E L+R G VV+K +L LY Sbjct: 121 ACLGTTLAVANLELDTAGREVRVAGRVVPVPPRELGLLECLMRRVGHVVTKGALEDSLYA 180 Query: 181 -DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +AE+ + ++ ++ RLR+++ A + Q + T G GY+ Sbjct: 181 LEAEV-TPNALEAVVSRLRRRLAAAHAQVALHTAHGIGYML 220 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 13/225 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D+ L L ++ + VD A D + Y+ + I+D+ LP +G+ Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L R+ RS++ +P+L+LTAR+S +DKV L AGADDY+ KP EE++ARM+AL+RR + Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GLASQVISLPP------FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ISLPP ++ ++ E+S V+ LT EY +ME IR+ +V S DS+ Sbjct: 121 ------ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSI 174 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQ-AQYPQEVITTVRGQGY 218 + L+ E +T+ + LR K++ A ++I V G GY Sbjct: 175 IEHLWSIEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGY 219 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 10/81 (12%) Query: 45 PDIAIVDLGLPDEDGLSLIR------RWRSNDVSLPILVLTARESWQDKVEVLSAGADDY 98 PD+ I+D+ +P +G+ L + RWR LPILVLT + + E+ AGADD+ Sbjct: 530 PDLLIIDVEMPHYNGIDLCQVIRNEPRWRY----LPILVLTNHTDPETRAELFRAGADDF 585 Query: 99 VTKPFHIEEVMARMQALMRRN 119 ++KP E++AR+ + + R+ Sbjct: 586 ISKPVVGPELIARLFSRLHRS 606 Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLP--DEDGL 60 +L+V+ + +L + + G + A A + E+ P I +++L P +EDGL Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ + +P+++ + R S+ D++ V G+ ++ KP +++ + ++ N+ Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIVEIVTGILNNNT 483 >UniRef50_C1TR79 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR79_9BACT Length = 222 Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 129/221 (58%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+L+VED+ ++ ++ + G+ VD D + A L+ + I+DLGLPD GL Sbjct: 3 IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDMESAATALDLENFSMMILDLGLPDGSGL 62 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+++ R LP+++LTA ++ +++ L GADDY+ KPF +EE+ AR++AL RR Sbjct: 63 ELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRVR 122 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S I + ++D + + +S + ++L+ EY ++ T + N G V+S++ L LY Sbjct: 123 GDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLYG 182 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ES+ I V + LR+K+ +++ VRG GYL + Sbjct: 183 WEKDVESNAIQVHIHNLREKLGT----DIVKNVRGFGYLMD 219 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL+VED + + ++ V D + + + D+ I+D+ LP DGL Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R V PI++LTAR D+V+ L GADDY+ KPF++EE+ AR+QAL+RR+ Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+ + Q+D R ++ + ++LT+ E++++E L+R+ +V+++ L+ ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKI----QAQYPQEVITTVRGQGYLFELR 223 ++ +DV + R+R K+ +A I ++RG GY +R Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLSIR 227 >UniRef50_Q5SIK7 Response regulator n=12 Tax=Deinococci RepID=Q5SIK7_THET8 Length = 227 Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 129/217 (59%), Gaps = 3/217 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED+ + ++ ++++AG QVD A+ E E PD+ ++DLGLPD DG Sbjct: 3 RILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPDLDGAE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR R+ D PILVLTA+++ KV +L+ GADDY+ KPFH E++AR+Q +R G Sbjct: 63 VARRIRATD-DTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 S+V+++ ++ +R++ + ++L+ E+ ++ L+ G+V + + +++ Sbjct: 122 --SEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGR 179 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ++S+ +DV M LR K++ + TVRG GY Sbjct: 180 PLGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216 >UniRef50_A6W3P8 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A6W3P8_MARMS Length = 222 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 2/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++EDN L ++V ++ GH +D ++A+ L+ D+ I+D+ LP + G Sbjct: 1 MRMLLIEDNESLADSIRVYFKNLGHPIDWIGSVEKAEASLSFDDFDLLILDINLPGKSGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ RS +P+LVLTAR D+V L GADDY+ KPF E+ AR +AL RR Sbjct: 61 QLLQSLRSKGNRIPVLVLTARTEVDDRVSSLDFGADDYLAKPFDFRELAARCRALYRRER 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS I DL+ +N + L E ++E ++N +V++KD + +LY Sbjct: 121 GGASNEIQCGNLVYDLAAHSAKVNGITLDLRPRELQLLELFLKNLDRVLTKDDISNRLYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E + I+ + RLRK++ +I T+RG GYL Sbjct: 181 YDEAYTPNAIEQTLTRLRKQLDGS--TLIIKTIRGLGYL 217 >UniRef50_B9JYM6 Two component response regulator n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JYM6_AGRVS Length = 222 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 14/224 (6%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEA--DYYLNEHIPDIAIVDLGLP 55 MR+L+ ED+A + H+ ++ G++V + D EA D L I+DLGLP Sbjct: 1 MRILLAEDDANIGRHVAETLRGEGYEVTLVNKGPDVWEAGEDTGLG-----AIILDLGLP 55 Query: 56 DEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 DGLS++RRWR + + P+LVLTAR SW ++V+ AGADDY+ KPF EE++AR++AL Sbjct: 56 GLDGLSILRRWRKDRIQTPVLVLTARGSWMERVDGFDAGADDYLPKPFRTEELLARLRAL 115 Query: 116 MRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 +RR + + S FQVD + R ++ N +++++ E+ +++ L++N G+V S + Sbjct: 116 LRRAGKTSHTLFSAGRFQVDEAGRTVTFNGALLEVSPLEFRLIQILVQNKGRVFSAYEIA 175 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 Q+ + + ++ ++ R+RKK A I T RG GY+ Sbjct: 176 TQIQGRDDDASKNAVEAMVARIRKKTDAS----AIETRRGFGYV 215 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 9/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVVED+A LR L + G+ ++ AED +A P + I+D+ LP DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L R R+ + S+PIL+LTAR S DKV L AGADDY++KPF + E++ARM+AL+RR+ Sbjct: 91 LCRLIRT-ESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 LASQV-----ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 SQ + + ++ + R + N + + E+ + +++N +V S++ L+ Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQA--QYPQEVITTVRGQGYLFE 221 +++ + T+DV + LR+KI+A P+ +I TVRG GY FE Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLI-TVRGTGYKFE 255 >UniRef50_A8HY28 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HY28_AZOC5 Length = 228 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+LVV+D + L + AG+ V A+DA A + H PD ++DLGLPD DG Sbjct: 4 IRILVVDDEPAIHRFLSPALTAAGYGVARADDAAGALRAIATHPPDAVLLDLGLPDMDGK 63 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I R R +PI+VL+AR+ +K+E L GADD+V KPF + E+MAR++A +R+ Sbjct: 64 EVIGRVRQFS-QVPIIVLSARDREAEKIEALDLGADDFVNKPFGVGELMARIRAALRQRG 122 Query: 121 G---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G A V+ + P ++D R ++ + + IKLT E+ ++ L R+ G+V++ ++ Sbjct: 123 GDTHAADVVLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGA 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQ-YPQEVITTVRGQGY 218 ++ A L ++ + V +G+LR++++ + +I T G GY Sbjct: 183 VWGPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGY 224 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +RVL+ +D +R LK ++ + VD A D +EA + ++ I+DL +P DG+ Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R N+ ++PIL+LTA++ DK+ LS GADDY+TKPF + EV+AR++ALMRR Sbjct: 64 EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 121 GLASQ-------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 L S +++ +D+S+ +++ D+ I LT E +++ N +V +K Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 L ++ + + +T+ V + +LRKKI+A + I TV G GY F Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 133/224 (59%), Gaps = 8/224 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 V +VED ++ LK ++ +G++V+ A++ KE + E PD I+DL LPD G + Sbjct: 5 VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64 Query: 63 IRRWR-SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ R ++DV PI++L+A+ S +D++ + GADDYVTKPF EV+ R++A++RR Sbjct: 65 CKQIRLTSDV--PIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRT 122 Query: 122 LAS-QVISLPPFQ--VDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 L ++ S + +D ++E+ +N+E I LT E+ I+ + ++ G+V S+ L+ ++ Sbjct: 123 LNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKI 182 Query: 179 YPDAELRE-SHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 D+ +IDV + LRKK++ Q + I TV G GY F Sbjct: 183 QEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_C9YE22 Response regulator mprA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE22_9BURK Length = 248 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 135/237 (56%), Gaps = 29/237 (12%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ LLR L Q+ AGH V A D +A L D ++DLGLP DG+++ Sbjct: 19 LLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVVDGIAV 78 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R +LP+L+LTAR+ D+V+ L+AGADDY+TKPF++ E++AR+QA++RR+ Sbjct: 79 LQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRRS--- 135 Query: 123 ASQVISLPPFQVDLS-----RRELSIN---------DEVIKLTAFEYTIMETLIRNNGKV 168 LP F L R L ++ D+ ++LT E++++ L+ N G+V Sbjct: 136 -----RLPAFGGSLEVQSTHSRNLRLDPVLPLAWLGDDPMELTHREWSLLSLLVNNMGQV 190 Query: 169 VSKDSLMLQLYPDAELR----ESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 V ++ +L ++ A L S+ ++V + RLR+K+ I VRG GY+ E Sbjct: 191 VGRED-VLSVWQTAPLEGGAAGSNALEVYVHRLRRKLTDSGLN--IRNVRGLGYMLE 244 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 131/222 (59%), Gaps = 7/222 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVV+D + +R+ +++Q++ G++V A D +EA NE PD+ I+D+ LPD DG Sbjct: 19 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 77 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 L+R +R D +P+L+LTA+ DK+ L GADDYVTKPF+ E++ R++ + RR Sbjct: 78 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137 Query: 119 --NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 ++ +VI + R++ ++ + I+LT E+ + + + N +V +D L+ Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +++ + + +D+++ RLRKK+ E I T+ G GY Sbjct: 198 KVWGFEYIGNTRAVDIMVQRLRKKLGNS--GEYIKTIYGVGY 237 >UniRef50_A1SG19 Response regulator receiver n=7 Tax=Actinomycetales RepID=A1SG19_NOCSJ Length = 234 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVVED + L ++ G+ V + ++A + P++ I+DLGLPD DGL Sbjct: 8 RVLVVEDEEDIAFPLVRTLEREGYDVSWVDSGQKALDTMATA-PEVVILDLGLPDIDGLE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR R I+++TAR D+V L GADDY+ KPF + E+ AR++AL+RR S Sbjct: 67 VCRRAREAGFEGAIMIVTARAGELDRVVGLDYGADDYLAKPFGLAELQARVRALLRRTSS 126 Query: 122 LASQVISLPP--FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 ++ P ++D+ R + DE + LT E+ ++ L N KVVS+ LM ++ Sbjct: 127 GSATAEGAKPDGLRIDVDARRVYAGDEEVPLTGKEFEVLNILAANRDKVVSRGRLMADVW 186 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+DV +GRLR+K+++ + + VRG G+ E Sbjct: 187 DENWYGSTKTLDVTIGRLRQKLESVGVTDRVVAVRGVGFRLE 228 >UniRef50_Q21ZH1 Two component transcriptional regulator, winged helix family n=2 Tax=Comamonadaceae RepID=Q21ZH1_RHOFD Length = 239 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 33/242 (13%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ LLR L Q+ AGH V A D + A L + D I+DLGLP G+ + Sbjct: 4 LLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVSGMEV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +LP+LVLTAR+ +D+V+ L+AGADDY+TKPF + E+ AR+ A++RR Sbjct: 64 LRWLRKRLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLRR---- 119 Query: 123 ASQVISLPPFQ------VDLSRR--------ELSINDEVIKLTAFEYTIMETLIRNNGKV 168 LP F D +RR + + DE ++LT E+ ++ L+ N G+V Sbjct: 120 ----ARLPAFGGSLELVTDGARRLRVDARLPQAWLGDEALELTQREWALLSLLVTNAGQV 175 Query: 169 VSKDSLML--QLYPDAELRE-------SHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 +S++ ++ Q P S+ ++V + RLR+K+ I VRG GY+ Sbjct: 176 ISREDVLCAWQSEPGDGTSTGASAGVGSNALEVYIHRLRRKLADSGLN--IRNVRGLGYM 233 Query: 220 FE 221 E Sbjct: 234 LE 235 >UniRef50_B3PS81 Putative two-component response regulator protein n=4 Tax=Rhizobium RepID=B3PS81_RHIE6 Length = 225 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 131/220 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+A LR L I+D G ++D E A+E L E D+ ++DLGLPDEDG+ Sbjct: 1 MRILLIEDSARLRELLCEAIRDEGWRIDAFETAQEGRIALREGSYDLLLLDLGLPDEDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R P+LVLTAR + +++ L AGADDY+ KPFH E+ AR++AL RR+ Sbjct: 61 DFLKSLRDAGAQTPVLVLTARGAIDERIAGLDAGADDYLAKPFHNGELTARIRALSRRSP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ ++D++ R+++ + L E ++E L+RN GKVV+K + Sbjct: 121 VTSMPILEFAALKLDVASRQVTCAGHDVALAPSEKGLLELLMRNGGKVVAKTKIEHAFSE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + R S+ +++ + RLRKK++ + I T+RG GY+ Sbjct: 181 FGDERSSNAVELAVSRLRKKLEGHKTRLSIETIRGVGYMM 220 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 125/218 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV ED + + L + +AG+ VD A+D EA + H D I D+ +P DG+ Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIR+ R N P ++LTAR +D+V+ L AGADDY+ KPF + E++AR++A++RR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++S+ ++DL I LT E++++E L+ + + VSK ++ +++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ++ + V + LR+KI + +I T RG GY Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGY 218 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 126/220 (57%), Gaps = 3/220 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED ++ L++ +Q G V ++A+ +L + +P + ++D LP E G++ Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 R R + SLPI+VLTAR D+V L +GADDY++KPF E+ AR+QAL+RR+ Sbjct: 72 WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 GL + + VD+ ++++DE++ + E+ ++ N +V S+++L+ + Sbjct: 132 YGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + E T+DV + RLR+ + +I TVRG+GY Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGY 231 >UniRef50_C8X3Y5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3Y5_DESRD Length = 236 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED L L+ +Q G+ V+ A D +EA D+ I+DL LP DG Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R+ LPIL+LTAR + +D+++ L AGADDY+TKPFH++E++ R+Q +++R Sbjct: 68 VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQW 127 Query: 122 L-----ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 V+ V+ + E +LTA E +++ LI + G+VVS+ L+ Sbjct: 128 YQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELLE 187 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQA--QYPQEVITTVRGQGYLF 220 ++ ++ T+D + RLRK +A ++P E IT+VR GY F Sbjct: 188 NVWQVEGTVQTRTVDAFIARLRKYFEADPKHP-EFITSVREVGYQF 232 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 128/225 (56%), Gaps = 12/225 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ ++ + ++D + VD + K A+ L D+ ++DLGLP +DGL Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R S P+L++TAR+ ++ L GADDY+ KPF + E+ ARM+A++RR+ Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 G-----LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 G L + VI+L P + E++ + I L+ E++++ LI G ++S+ L Sbjct: 121 GQSSPKLTNGVITLDPTSYVV---EIAGQNSTITLSNKEFSVLHALISRAGMILSRADLE 177 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++Y E ES+ ID L+ LRKKI +E I VRG G++ Sbjct: 178 DKIYAWGEEVESNAIDFLIHGLRKKI----GKEQIKNVRGVGWMM 218 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 133/231 (57%), Gaps = 11/231 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++++++D+ +R +K +QD G E K+ D L + PD+ I+DL LPDE+GL Sbjct: 4 KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + +R R N + +PI++LTA+ D++ L GADDY+ KPF+ E++AR+ ++ RR+ Sbjct: 64 ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123 Query: 120 ------SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 + ++ + I F+ + R L + + I LT+ E+++++ I N + +S+D Sbjct: 124 ELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRDQ 183 Query: 174 LMLQLYPDAELR-ESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFEL 222 +M QL EL +IDV + R+RK I+ + + + T G GY+FEL Sbjct: 184 IM-QLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFEL 233 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 + V+V+ED + L+V + G +V A + + A + E D+ I+DL LPD DG+ Sbjct: 17 LHVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGM 76 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R+ LPI++LTAR Q++V+ L GADDY+ KPF +E++AR+ A+ RR + Sbjct: 77 VVCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRR-A 135 Query: 121 GLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G++ V+ + ++L RE++++ I+LT E+ ++E +R+ +V ++ +L+ ++ Sbjct: 136 GISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRV 195 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + + +S+ ++V + LR+KI + +++I TV G GY Sbjct: 196 WGFTYVGDSNIVEVHISNLREKI-GDHERKLIRTVYGVGY 234 >UniRef50_D1BX45 Two component transcriptional regulator, winged helix family n=26 Tax=Actinomycetales RepID=D1BX45_XYLCX Length = 227 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 16/216 (7%) Query: 10 ALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 AL R V +Q G D N D+ ++DLGLPD DGL + R R + Sbjct: 20 ALTREGYDVIVQGTGQGAID-----------NAGSADVVVLDLGLPDMDGLDVARELRGS 68 Query: 70 DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISL 129 +S+PILVLTAR D V L AGADDYVTKPF + E++AR++AL+RR G ++ L Sbjct: 69 GLSVPILVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGETTEEEEL 128 Query: 130 PP--FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRES 187 +VD+S D + LT E+ +++ L+ N G VV +D+LM ++ + + Sbjct: 129 RAQDVRVDVSAHRAFQGDRELHLTTKEFDLLKVLVANAGSVVVRDTLMRDVWGSDPVGST 188 Query: 188 HTIDVLMGRLRKKI--QAQYPQEVITTVRGQGYLFE 221 T+D+ + LR+K+ A P+ V +TVRG G+ FE Sbjct: 189 KTLDMHVSWLRRKLGDDANAPRYV-STVRGLGFRFE 223 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED L L+ ++ G+ V A D ++A E PD+ +VD LP G+ + Sbjct: 5 VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64 Query: 63 IRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-N 119 RR R ++PI++LTAR D+V L GADDYV KPF + E+ AR++A++RR Sbjct: 65 CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 GLA VI +D + D I L E+ +++ L+++ G+V S++ L+ ++ Sbjct: 125 PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 E+ T+DV +GRLRK + + ++ I TVR GY F++ Sbjct: 185 GSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_UPI0001C31C36 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C36 Length = 235 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 22/230 (9%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED +R ++V ++ AGH V +A + EA L PD+ ++D+ +P+ DG Sbjct: 6 VLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDVTMPELDGWQT 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + R R + +P+L+LTAR DKV L +GADDYVTKPF +E++AR++AL+RR SG Sbjct: 66 LERIR-DLTEVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLRRTSG- 123 Query: 123 ASQVISLPP----------FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 PP VD RE+++ ++LT E+ ++ +R+ + +++D Sbjct: 124 -------PPEVRPAYRDAIVMVDYVSREVTVAGRPVQLTPLEFKLLSAFVRHPNETLARD 176 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKI--QAQYPQEVITTVRGQGYLF 220 L+ ++ D E + + +G LR+K+ A P I TVRG GY + Sbjct: 177 RLLELVWGDTEGFGGDQVKLYVGYLRRKLGWDAAAPSP-IETVRGFGYRY 225 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLV+ED+ + +L ++++G+ VD ++ K + D+ +VD LP+ DGL Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R+ P+LVL+A D+V+ L AG DDY+ KPF E++AR++AL+RR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GLASQVISL--PPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V +L ++DL R + N I L E+ ++E +RN G+V+++ L+ ++ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +++ IDV + RLR KI + ++ T+RG GY+ Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 127/219 (57%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ + ++ ++ GHQ+ +D + + PD+ I+D LP DGL Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 +L ++ R+ + IL+L+A +++++ L GADDY+ KPFH EE++AR++AL RRN Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + ++ LS + ++ I+LTA E +I+E +R G + S++ ++ ++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ++ +DV M RLRKKI + Q +I T RG GY Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGY 219 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 137/224 (61%), Gaps = 5/224 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAG-HQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG 59 MRVL+ ED+ L + ++ G VD ++ ++A Y D+ I+D LP+ DG Sbjct: 4 MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +S+ +R R IL+LTA+++ QD+VE L AGADDY+ KPF I+E+MAR++AL RR Sbjct: 64 VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + + +++ F+V+ + L + E I LT E+ +++ L++N G+V+++D ++ ++ Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183 Query: 179 YP-DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + DA++ TID + LRKKI + Q++I TVRG GY E Sbjct: 184 WGYDADV-SMKTIDATVKLLRKKIGDE-QQQLIKTVRGVGYTIE 225 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED A +R + ++ G Q +AED A LNE PD+ ++D LP G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 I+ + ++ +P+++LTAR +D+V L GADDY+TKPF +E++AR++A+MRR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 SGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S +A +VI + +D + + +E +++ E+ ++ + + +V S++ L+ + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + E T+DV + RLRK ++ ++ TVRG GY F R Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 >UniRef50_C6BHC0 Two component transcriptional regulator, winged helix family n=58 Tax=Burkholderiaceae RepID=C6BHC0_RALP1 Length = 236 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 134/236 (56%), Gaps = 16/236 (6%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ + + + AGH+V D A L D+ I+DLGLP DG+ Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+ ++R+ D P+L+LTAR+ DKV L+AGADDY+ KPF + E++AR+ AL+RR + Sbjct: 61 TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRN 120 Query: 121 GLASQVISLPPFQVDLSR-----RELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 +++ + P V R R + ++ ++L+ E+ ++E L+ G+VVSK L Sbjct: 121 D-STEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQ 179 Query: 176 LQL--YPDAELRESH------TIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 L + A SH I+V + R+R+KI ++ + I TVRG GYL + R Sbjct: 180 EHLASFGHAIGEASHDVVGDTAIEVYVHRVRRKI--EHSEAEIVTVRGFGYLLQAR 233 >UniRef50_A8F0H8 Transcriptional activator protein CzcR n=24 Tax=Alphaproteobacteria RepID=A8F0H8_RICM5 Length = 243 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL++E + + +++ + G D A E D+ I+DL LPD +G Sbjct: 7 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 66 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R R+ + PIL+L++ K+ S+GADDY+TKPF EE++AR++A++RR+ Sbjct: 67 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 126 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ V ++L R + ++ + + LT EY I+E LI G +++K+ + LY Sbjct: 127 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 186 Query: 181 DAELRESHTIDVLMGRLRKKIQ-AQYPQEVITTVRGQGYLFE 221 + E IDV + +LRKK+ A ++ I TV G+GY+ + Sbjct: 187 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLK 228 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+LVVED + L+ + G+ V+ A D A E D+ ++D+ LP +DGL Sbjct: 2 IRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGL 61 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R R + PIL+LTA+ +KV L GADDYVTKPF +E+ AR++AL+RR S Sbjct: 62 EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121 Query: 121 GLAS-QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G + S +VD +R EL + + ++LT E+ +++ IR G+V+S+D L+ + Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQE--VITTVRGQGYLFE 221 + +D + LR+KI P E + VRG GY F+ Sbjct: 182 GRDTFTSARIVDNHIANLRRKI-GDDPAEPRYLRNVRGLGYRFD 224 >UniRef50_P0A4H9 Transcriptional regulatory protein dltR n=9 Tax=Streptococcus RepID=DLTR_STRA3 Length = 224 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 127/223 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED + ++ + D G+ VD A D + Y+ + D+ ++D+ LP GL Sbjct: 1 MRLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++R R + PI+ LTA+ DKV L GADDY+TKPF +E++AR++ R++S Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + + L +++ EL + +KL+ E+ +ME +RN +++ K+ L+ +++ Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++ E + ++V + LRKK++ I T +G GY E R Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEIITTKGFGYSLEER 223 >UniRef50_C8WRU6 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRU6_ALIAD Length = 226 Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED A LR L Q G+ VD + A + D ++D LPD DG+ Sbjct: 1 MRLLVVEDEATLRRELVQLFQQRGYTVDAVDTVFAAVEHGMSGAYDCIVLDYMLPDGDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R + PIL+LT + +D+V L+ GADDY+ KPFH +E++AR+ AL+RR+ Sbjct: 61 EALTQLREAGCTTPILMLTVKNDPKDRVLGLNKGADDYLGKPFHPDELLARVGALVRRSP 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 L +V+ ++ R L + ++LT+ E+ +ME L R+ +V+++D L+ +++ Sbjct: 121 ALTDDEVLEHGRAKLHTRSRSLEYDGRTLELTSKEFALMEALFRHKHQVMTRDQLIAKVW 180 Query: 180 -PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 PDAE+ +S +D + LR+K + I TVRG+GY + Sbjct: 181 GPDAEVADS-ALDTYIYFLRRKCSNIGWKNAIVTVRGRGYALQ 222 >UniRef50_A6T2K6 Two-component response regulator n=20 Tax=Proteobacteria RepID=A6T2K6_JANMA Length = 239 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLVVED+ L+ L +Q G A A+ + D+ ++DLGLPD+DGL Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L++ RS +SLP++VLTAR++ + ++ L +GADDYV KPF + E+ AR+ A++RR+ Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+Q I+ P ++D ++ +N+++I L+ E+ I+ L G ++ +L +++ Sbjct: 140 GRATQEITAGPLRLDPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG 199 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + S+ ++V + +R+K+ A E I T RG G+ R Sbjct: 200 EDIQISSNALNVHIHNIRRKLGA----EAIETSRGLGFRLGWR 238 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 3/220 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVVED ++ L+V +Q G V + A+ L P + ++D LP ++GL+ Sbjct: 9 RVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLA 68 Query: 62 LIR--RWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 R R R LPI++LTAR D+V L +GADDY+ KPF E++AR+ AL+RR+ Sbjct: 69 WCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRS 128 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G A+ + L QVDL + ++ + L E+ ++ + N +V S+D L+ Q+ Sbjct: 129 YGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQI 188 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + E T+DV + RLR+ ++ ++I TVRG+GY Sbjct: 189 WGRQSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGY 228 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 136/230 (59%), Gaps = 11/230 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL+V+D A +R L+ ++ G+ V A D +EA ++ +PD+ I+D+ +P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R D +PI++LTA D++ L GADDYV KPF +E+ AR++A++RR + Sbjct: 76 VCQEIR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134 Query: 122 LA-------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 A S +I+ +DL++R++ ++E I+LT E++++E LI +G+ S+ + Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 175 MLQLYPDAELR--ESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + +++ R ++ +DV + RLR K++ ++I T RG GYLF+ Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_D1CC84 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CC84_THET1 Length = 233 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 6/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VV+D + ++ Q++ G+ V + +EA + +H PD+ ++DL +P +GL + Sbjct: 6 IVVVDDEKSILKYISQQLKAKGYNVYPGMNGEEAISLVEQHDPDLLLLDLKMPVMNGLEV 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +PI+V++A + + VE L++GADDYV KPFH EE+ AR++ +RR Sbjct: 66 CKRLREWS-KVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAEER 124 Query: 123 ASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 SQ V P ++ SRR++++NDE +KLT EY+I+E L++N GKV++ L+ ++ Sbjct: 125 PSQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNRV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 + E+ + V +GRLR+K+ + I T +G GY F Sbjct: 185 WGPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGYRF 227 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 133/218 (61%), Gaps = 4/218 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VEDNA +R ++ +++ G++V A + +E H PD+ ++D+ +P DGL Sbjct: 25 VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGLEF 84 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-G 121 +RR+R+ + +P++ LTAR++ DKV L GADDYVTKPF + E++AR++A +RR+S Sbjct: 85 LRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSSEP 143 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 L + V+ ++D + R + E + LT E+ +M +R G+V ++ L+ QL + Sbjct: 144 LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQLQEE 203 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGY 218 A L TIDV + LR KI+A+ + +I TV G GY Sbjct: 204 A-LGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGY 240 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 10/227 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D+ LR ++ ++ G VD D + D+ L+ D+ I+DLGLPDEDGL + Sbjct: 9 ILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDEDGLQI 68 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R PIL+LTAR D++ L GADDY++KPFH E++AR+QA++RR + Sbjct: 69 CQRLRLT-YDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTKPM 127 Query: 123 --------ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ++ F VD R+++ E ++L+ ++ + TLI++ G+ +S++ L Sbjct: 128 NRGRQHADEPEICMKGAFVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQPLSRERL 187 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 ML + +ID+ + RLRK + ++ + I TV G GY+F Sbjct: 188 MLLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMF 234 >UniRef50_A7K1J9 DNA-binding response regulator n=13 Tax=Vibrionaceae RepID=A7K1J9_VIBSE Length = 243 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 18/235 (7%) Query: 3 VLVVEDN----ALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDED 58 +L+VED+ L++ HLK Q GHQV A + +A + D+ I+D GLPD D Sbjct: 12 ILLVEDDDDLAELVQMHLKFQ----GHQVSRATNVADAKAQYQQQPFDLLILDRGLPDGD 67 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL + R P+L+LTAR+ DKV+ L AG DDY+TKPF + E AR++ ++RR Sbjct: 68 GLDICHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRR 127 Query: 119 NSGLASQVIS---------LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 S A ++ P ++ ++S+ND+ + LTA E+T+++ L G+V Sbjct: 128 VSQTAEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVY 187 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQ-AQYPQEVITTVRGQGYLFELR 223 SKD L+ ++ + HT+ + RLR K+ + I TV G GY F+ R Sbjct: 188 SKDELLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQPR 242 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 139/224 (62%), Gaps = 6/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+ + + L + + G++V+ A D EA PD+ ++D+ LP++DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-NS 120 + + R ++PI++LTA++ DKV L GADDY+TKPF +E++AR++A++RR S Sbjct: 63 VCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 L+ SQ I PPF++DL +R + + + + L+ E+ I++ L+ + G+V ++D ++ ++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 PDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLFE 221 + E +DV + LR+K++ +P+ +I TVR GY F+ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYII-TVRNLGYKFQ 224 >UniRef50_B1ZUL4 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B1ZUL4_OPITP Length = 226 Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LV+ED A L H+ + GH D ++ + PD+ ++DL LP DGL Sbjct: 1 MRILVIEDEAQLARHIVRALTRHGHVASAELDGEKGLQSVLRDPPDLVVLDLNLPGVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R R + +L+LTAR + +V+ L AGADDY+ KPF ++E++AR++AL RR + Sbjct: 61 AVLARLREANSPARVLILTARSEVEHRVKGLKAGADDYLPKPFSLDELVARIEALGRRGA 120 Query: 121 G-LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 A+ + + Q+D+ R +S + L+ E+ +++ L++ G+V S+ L +++ Sbjct: 121 TPTAADFLKVADLQMDVQHRRVSRAARPVALSPREFDVLQVLMQEPGRVFSRTELCERVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ++ T+++ + RLRKK+ + + +I T+R GY Sbjct: 181 QRDHQYDTRTVEIFIARLRKKVDSGFNAPLIHTLRSIGY 219 >UniRef50_UPI0001BC3112 two component transcriptional regulator, winged helix family protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3112 Length = 221 Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 134/223 (60%), Gaps = 8/223 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI---PDIAIVDLGLPDED 58 R+L+VED+ LR L + G++V D K+ L+E + ++ ++DL LP D Sbjct: 3 RILIVEDDETLRGELSYFLIGNGYEVSVITDFKDT---LDEMLKTDTELILLDLNLPGID 59 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G +L+R +R + + P++++T++++ D++ ++ GADD+V+KP++ ++ ++A++RR Sbjct: 60 GQTLLRMYRK-EKNTPVIIVTSKDTEMDELICMTYGADDFVSKPYNPALLLLHIEAVLRR 118 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 N G VI ++LSR +S N I+L+ E I+ + RN+GK+VS+D +M L Sbjct: 119 NGG-DENVIRYRYITLNLSRSSISGNGNEIELSKNECRILNYMFRNSGKIVSRDDIMNYL 177 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + D E + +T+ V + R+R K+ +VI+T RGQGY E Sbjct: 178 WDDCEFVDDNTLTVNITRVRHKLAELGYGDVISTKRGQGYYIE 220 >UniRef50_B6FX18 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FX18_9CLOT Length = 224 Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L VEDN L + ++ V+ ED +EA Y + + I D+ ++DL LP +G+ Sbjct: 1 MKILAVEDNKTLLDSI-IEELSKHFDVEGCEDGEEALYMIEQDIYDLVVLDLMLPGMNGM 59 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ + P+L+LTA+E+ DKVE GA+DY+TKPF++EE++AR+ A++R N Sbjct: 60 EILKNARNKGIDTPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAILRTNG 119 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 L + + +D S + + I DE I L +Y ++E + N G ++ K+ + +++ Sbjct: 120 KLTEKTGLQFKDMYIDTSEKRVFIGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRIW 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++V + LRKK+ + I T R GY+ + Sbjct: 180 GIDSDATIEIVEVYVSNLRKKLSKFGYDKYIKTKRKVGYILD 221 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 132/218 (60%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED+ L+ L+ ++ G VD ++ A L + ++DLGLPD+DGL Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R D +LP++V+TAR++ D++ L GADDY+ KPF +EE++AR++A+ RR + Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A V+++ ++D +R ++ + + L+ E+ ++ L+R G V+S++ +LY Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E ES+ + V + LRKK+ + I TVRG GY Sbjct: 216 WGEEIESNAVQVHIHNLRKKLG----HDTILTVRGVGY 249 >UniRef50_Q8GP20 Swarming motility regulation protein rssB n=14 Tax=Enterobacteriaceae RepID=RSSB_SERMA Length = 219 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L L ++ AG + +A+ L+ D+ ++DL LPD DGL Sbjct: 1 MNILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + WR+ ++PI++LTAR+ + V L +GA+D++ KPF + E+++R++A+ RR + Sbjct: 61 QKLIAWRAAGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ASQ SL +D ++ +++E++ L+ EY ++ L+R G VV K L +L+ Sbjct: 121 GFASQTWSLGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ES++++V M LR+KI ++ + TVRG GYL + Sbjct: 181 HGDSVESNSLEVHMHNLRRKI----GKDRVITVRGIGYLLK 217 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ +L L + + VD +D + Y + D+ I+D+ LP+ DG+ Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL +R+R+ ++PIL+LTA+++ KV+ L AGADDYV KPF E++AR++AL+RR S Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +++ ++ S E++ N + LT EY ++E L+RN V S + L+ +L+ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 DAELRESHTIDVLMGRLRKK-IQAQYPQEVITTVRGQGYLFE 221 + T+ + RLR K + A P + I T+ G+GY + Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLK 222 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V++++D+ L ++ G +V D ++ L PD ++D+ +P +G Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + RS+ LP+L L+ + + + G DDY+ KP E+ R+ ++R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQRV 646 Query: 120 SGLAS 124 A+ Sbjct: 647 RAWAN 651 >UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1L3_THERP Length = 224 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+A + L++ ++ GH V D A + PD+ I+DL LP G + Sbjct: 4 ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHGRDV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R + PIL+LTA + +D VE L GADDYVTKPF E++AR++AL+RR SG Sbjct: 64 CRALRLRHAT-PILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASGP 122 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 + + ++D R + I+DE + L E+ ++ L+ G+++S+ L+ Q++ D Sbjct: 123 PVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCDH 182 Query: 183 ELRE-SHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 E+ E S T+DV + RLR+K+Q + I ++RG GY L Sbjct: 183 EIDEASRTLDVHVNRLRQKLQKSRVR--IESIRGIGYRLAL 221 >UniRef50_B1XPE6 Two-component response regulator; transcriptional regulatory protein n=21 Tax=Cyanobacteria RepID=B1XPE6_SYNP2 Length = 267 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 V ++E N LR L +Q A + + A + ++ +H+P + ++D LPD DGL L Sbjct: 6 VAIIEGNPHLRSLLGWHLQQANYAIYQAANLNQSRRVFEQHMPALVLLDSELPDGDGLEL 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R N ++ IL+L+A+ + +D V L AGADDY+TKPF ++E++AR++AL RR + Sbjct: 66 CRWLRQNTQAI-ILILSAKNTEKDVVAGLKAGADDYLTKPFGMQELLARVEALTRRIRAV 124 Query: 123 ASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ + + ++DL +R + I LT E++++ L + NG+ +S+ L+ + +PD Sbjct: 125 SAPLQLDYGELRIDLVQRRVQFRGLYIDLTPQEFSLLYVLAQANGEPLSRSELLRRAWPD 184 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQE--VITTVRGQGYLFEL 222 A + TID + LRKKI+ Q P++ +I TVR GY F L Sbjct: 185 A-IDNPRTIDTHVLSLRKKIE-QDPRQPNLIQTVRNVGYRFNL 225 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 132/230 (57%), Gaps = 10/230 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL-NEHIPDIAIVDLGLPDEDG 59 +R+L+V+D L L++++ G++V+ A D ++ PD+ ++D LPD G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + + +R RS+ V+ PIL+LT + D+V+ L AG DDY+ KPF IEE+MAR++A+ RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 SGLA---------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVS 170 G S +S+ ++ R++ + + I+L+ EY ++ L+R NGKV+ Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 KDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +M ++ + + + +DV + LR+K++ + +I TVRG G++ Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFIL 241 >UniRef50_D0XTW5 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW5_9CAUL Length = 241 Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ LR + ++D H V +A DA A + E +A++D+ LP EDGLSL Sbjct: 13 ILLVEDDVELRREMAAYLRDNDHLVHEAGDAASARKIMAERAIQVAVLDINLPGEDGLSL 72 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN--- 119 R + D IL+LTA D++ L GADDYV KP E++AR++A++RR Sbjct: 73 CRSL-AGDGGPAILMLTALGDPIDRILGLELGADDYVVKPIMPRELLARVKAMLRRRPPG 131 Query: 120 -SGLASQVISLPPFQVDLSRREL-SINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + + + F++DL+ R+L + N V+ LT E I+ L+ + +VV +D L+ Sbjct: 132 PAARKTNIYRFADFRLDLAARQLRAPNGAVLLLTRSELAILSALLDRDRQVVPRDELIAL 191 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 L D +D+ + RLR+KIQ Q +E+I T RG GY+ + R Sbjct: 192 LRGDETEEVGRAVDLHISRLRRKIQDQTDRELIRTYRGVGYMLDAR 237 >UniRef50_Q03TF3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TF3_LACBA Length = 230 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVVED L + V++ + + A D ++ ++ ++ + D I+DL LP E GL Sbjct: 6 KVLVVEDEKALSADI-VELIEPICETTTAFDGEQGEFLASQGVFDAIILDLMLPGESGLD 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+ R+ V P+L+LTA+++ DK+ + GADDYVTKPFH EE++ARM+AL++R Sbjct: 65 LLLHIRNQGVKTPVLILTAKDTIADKLRGFNDGADDYVTKPFHREELLARMKALLKRTGH 124 Query: 122 L-ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 L +S I+L +++ S+ + N + L E+ ++ L+ N G +++K+ + +L+ Sbjct: 125 LNSSDTIALGQLEINTSKHLATFNGAPLTLKGREFDLLAYLVGNPGTIITKEQIFNRLWG 184 Query: 181 -DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 D+E S ++V M LRK+++ + T+R GY+ E Sbjct: 185 FDSETSLS-VVEVYMSNLRKELKHAGSDLSLRTIRNAGYIVE 225 >UniRef50_C1A1E5 Turgor pressure transcriptional regulator n=5 Tax=Actinomycetales RepID=C1A1E5_RHOE4 Length = 226 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 13/227 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG-- 59 R+LVV+D + L++ + G+ V A A E PD+ I+DLGLPD DG Sbjct: 3 RILVVDDEPQILRALRINLTVRGYDVVTASTGAGALRAAAERPPDVVILDLGLPDMDGTE 62 Query: 60 -LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 L+ +R W + P++VL+AR DKVE L AGADDYVTKPF ++E +AR++A RR Sbjct: 63 VLAGLRGW----CTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARR 118 Query: 119 NSGLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 + A + F VDL+ + +S E + LT E+ ++E L+RN GK+V + L+ Sbjct: 119 GTSAADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELL 178 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 +++ A E+H + V + +LR+K++ P+ +IT G GY F Sbjct: 179 REVWGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEA-GMGYRF 224 >UniRef50_A9F790 Two component system transcriptional regulatory protein n=34 Tax=Proteobacteria RepID=A9F790_SORC5 Length = 234 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 8/223 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL++ED +R L+ + G+++ +AE + PD+ ++DLGLPD DGL + Sbjct: 8 VLLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGLPDMDGLEV 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R ++PI+VL+AR QDK++ L GADDY+TKPF E++AR++ +R + Sbjct: 68 TRRLREWS-AVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALRHAASA 126 Query: 123 A------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 A ++ +VDL+RR + E + LT EY ++ TLIR+ GKV++ L+ Sbjct: 127 ARGATAEGHRFAVQDIEVDLARRVVLRAGEEVHLTPIEYKLLTTLIRHAGKVLTHRQLLG 186 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVI-TTVRGQGY 218 +++ A ++H + V M +LR K++ + +I T G GY Sbjct: 187 EVWGPAYAGQAHYLRVYMAQLRHKLERDPARPLILITEPGVGY 229 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 133/225 (59%), Gaps = 7/225 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+ L L +Q G V+ D + A ++ + DI ++D+G+P + GL Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 ++R R+ + +PI++LTAR+ +D+++ L GADDY+TKPF ++E++AR++A+ RR Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 119 -NSGLAS-QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 SG ++ + I + + S ++ + +I ++ E ++ L++N G+VV K L+ Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++Y + +++T++V M LRKKI I T+RG GY + Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINI---PNFIQTIRGVGYFVQ 222 >UniRef50_B1Y345 Two component transcriptional regulator, winged helix family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y345_LEPCP Length = 213 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL++ED+ L + ++ AGH V + + + D+A+VDL LPD DG+ Sbjct: 1 MRVLLLEDDIDLGQAVDDHLEAAGHSVYWCKLVSQ----VRNVTFDLALVDLNLPDGDGV 56 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+R WR P+++LTAR+ D++ L AGADDY+ KPF ++E++AR+ A++RR+S Sbjct: 57 DLVRYWRQAGRLTPVIMLTARDQVSDRIRGLQAGADDYLVKPFDLDEMLARIDAVLRRSS 116 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + + VDL +R++ + + LTA E+ ++ L G++ ++ + + L Sbjct: 117 --PSPRLQVHDNVVDLEQRQVLHQGQPLDLTAMEWAVLRCLASRPGRIFNRGEIDVALAA 174 Query: 181 DAE-LRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 D + +S+T++V++ RLRKK+ A +VI+T RG GY ++ Sbjct: 175 DGQPSSDSNTLEVIVSRLRKKLGA----DVISTHRGMGYRLDV 213 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D+ LR L+ + + G QV +A++ D L + ++DL LP EDGLS Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + RR RS +PI+++TA+ D++ L GADDY+ KPF+ E++AR++A++RR + Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 121 ---GLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 G SQ VI+ F+++L RE+ DE + LT+ E+ +++ L+ + + +S+D L Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 M +IDV + RLR+ ++ +P+ I TV G GY+F Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPR-YIQTVWGLGYVF 232 >UniRef50_C9XR57 Two-component response regulator n=11 Tax=Clostridiales RepID=C9XR57_CLODC Length = 244 Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 135/225 (60%), Gaps = 6/225 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60 ++L++ED +R + + ++ G+++ +A +EA + E+ IA++D+ LPD G+ Sbjct: 16 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 + + R N + I++LTA+ DK+E +GADDY+ KPF I+E++ R+ AL+RR Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135 Query: 119 --NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 +S + S I PPF +D+ +R+L N + I+LT E++I++ LI N + +S+D ++ Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 +++ L + +DV + R+R KI+ + + I T+ G GY F Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCF 240 >UniRef50_Q46TX9 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TX9_RALEJ Length = 231 Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 101/148 (68%), Gaps = 4/148 (2%) Query: 71 VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLP 130 V++P+L+LTAR+SW +KVE + AGADDY+ KPF +EE+ AR++AL+RR G+ + +S Sbjct: 78 VNVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELQARIRALIRRAHGMPAPELSCG 137 Query: 131 PFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTI 190 Q++ ++++ + LTA E+ +++ L+ + G +VSK +L +Y R+S+TI Sbjct: 138 SVQLNPRAGTVTVDGAAVVLTAHEFKVLDYLMHHPGAIVSKSTLTEHIYAQDFDRDSNTI 197 Query: 191 DVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +V +GRLR+K+ +VI TVRGQGY Sbjct: 198 EVFVGRLRRKLGV----DVIETVRGQGY 221 >UniRef50_C9XT65 Two-component response regulator n=18 Tax=Bacteria RepID=C9XT65_CLODC Length = 232 Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 10/224 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ +R + + + V +A KE + PD+ ++DLGL D DG+ + Sbjct: 6 ILLVEDDKTIRKFISTALLTQDYDVKEAITGKEGISIAVSYSPDVVLLDLGLEDMDGIEV 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 I+ R ++PI+V++ARE +DKVEV AGADDY+TKPF I E++AR++ R + Sbjct: 66 IKAIRQFS-NIPIIVVSAREQDRDKVEVFDAGADDYLTKPFSIVELLARVRVAFRHSQVE 124 Query: 123 ASQ------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 A Q + +D +R++ ++D + LT EY I+ L +++GKV++ + ++ Sbjct: 125 AQQKDDVKSTFEVDKLLIDFDKRKVIVDDVEVHLTPIEYNILSLLAKHHGKVLTHNFIIK 184 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQ--YPQEVITTVRGQGY 218 +++ E+ ++ V M LR+KI+ Q P+ +IT V G GY Sbjct: 185 EIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEV-GVGY 227 >UniRef50_P22104 Transcriptional regulatory protein tctD n=145 Tax=Proteobacteria RepID=TCTD_SALTY Length = 224 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 19/229 (8%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ EDN L H L+ + G VD D AD+ L+ + +A++D+ +P DGL Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++R R +LP+L+LTAR + D+V+ L+ GADDY+ KPF +EE+ AR++AL+RR++ Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDE--------VIKLTAFEYTIMETLIRNNGKVVSKD 172 G +V L EL +DE + LT E ++ L+ + VS+ Sbjct: 121 GQVHEVQQLG---------ELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQ 171 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L Q++ + +I++ + RLRKK+Q + ITT+RG GY+ E Sbjct: 172 QLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVR--ITTLRGLGYVLE 218 >UniRef50_C1XFY4 Two component transcriptional regulator, winged helix family n=2 Tax=Meiothermus RepID=C1XFY4_MEIRU Length = 218 Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L+ + G VD AED AD L D+ ++DLGLPD DG+ Sbjct: 1 MRLLLVEDHTGLGRLLQDTLSGQGFAVDLAEDMASADGLLQSFPYDLVVLDLGLPDGDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ R+ +P+L+LTAR+ D+V+ L AGADDY+ KPFH EE++AR++AL+RR Sbjct: 61 ELLQSLRARGEKMPVLILTARDGLADRVKGLEAGADDYLVKPFHPEELVARIRALLRRAR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + + ++D+ + + + + L+ EY ++E L + S+++LM +++P Sbjct: 121 GEPTNRFKVGRLELDMELKRAWWDGQSVHLSGREYALLEFLALHAEGYFSREALMEKVWP 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + T+D + LR+K+ E I TVR GY F Sbjct: 181 GEAAIDPRTVDTYVRYLRRKLSP----EAIETVRNLGYRF 216 >UniRef50_A1TXC3 Two component transcriptional regulator, winged helix family n=2 Tax=Marinobacter RepID=A1TXC3_MARAV Length = 227 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDG 59 MR+L+ ED+ L + + ++D + VD +D ++A + LNE D+AI+DL LP DG Sbjct: 1 MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESF-DLAILDLTLPRVDG 59 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L ++R+ R V LPI++LTAR +K++ L AGADDY+TKPF + E+ AR++A+ RR Sbjct: 60 LDIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRR 119 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 SG + + +D +L + E L E I+ L+R+ +V ++ L QLY Sbjct: 120 SGTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLY 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ES+ ++V + LR+++ Q I TVRG GY+ + Sbjct: 180 GWDQGAESNALEVHVHHLRRRLGKQ----AIRTVRGVGYMLD 217 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED +L+ + + G+Q D + ++ ++ D+ I+D+ LP DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +I R + P+L LTA+++ +DKV+ L GADDY+ KPF E++AR++ L+RR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSK---DSLMLQL 178 A+ V ++ VD+ RR + + + I LT EY ++E L++ G+V+ + SL+ + Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 D+ +++ IDV + RLR KI + ++I TVRG GY+ E+R Sbjct: 183 NFDS---DTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIR 224 >UniRef50_C2V3X6 Two component transcriptional regulator, winged helix n=4 Tax=Bacillus cereus RepID=C2V3X6_BACCE Length = 233 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 132/219 (60%), Gaps = 3/219 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LV+E++ +R + + ++ AG V + + ++A L ++ DI I+D+ LP DG + Sbjct: 6 ILVLENDITIRSFITLNMKRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDGFRV 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--NS 120 + R N+ + I++LTA +D+V L+ GADDY+ KPF I E++AR+Q+L+RR + Sbjct: 66 CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 125 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++I PFQ++L EL N+ VI LT E+ I+ L+ N+ K +S++ L+ +++ Sbjct: 126 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 185 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGY 218 + + IDV + RLR+KI+ E + TVRG+GY Sbjct: 186 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGY 224 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 128/218 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L R L + + + VD A+D K + D+ ++D+ +P DG+ Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+ ++ RS + PI++LTA++S D++ L AGADDY+ KP ++E +MAR++AL+RR + Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S VI Q++LS E++ +E I LTA EY ++E + N ++ ++ ++ +L+ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E T+ + LR+K++ + I TV G GY Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGY 218 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGL--PDEDGL 60 +L+++D+ L ++++ Q ++ A D A + + P I I+DL EDG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +L+ + +LPI++ T RES D+++V GA ++ KP +++ + ++ N Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKPLAAHQILKTVTDILHEN 512 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 10/222 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+ EDN + LK ++ G AED +A D+ I+DLGLP +DGL+ Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R R LPI+VLTAR+ D V+ L GA+DY+TKPF EE++AR++ + R+ Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQL-RDRR 121 Query: 122 LASQVISLPPFQV-----DLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + +Q S QV DL R+ + + V++L+A E+ + E L+R+ +V+SK+ L+ Sbjct: 122 IGAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLN 181 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +++ S+ I+V + LR+K +QY I TVRG GY Sbjct: 182 RVWGYDYDPGSNIIEVYIRHLRRKFGSQY----IETVRGMGY 219 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 127/219 (57%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVEDN L ++K ++ G VD A D E + D I+D+ LP G+ Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 SLIRRWRSNDVS-LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + R R + S +PIL+LTA S +++VE L+ GADDY+ KPF + E++AR++AL+RRN Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + + ++L RE+S E + L++ E++++E +RN G V S++ ++ +L+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 S+ +DV + LRKK++ E I TV GY Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGY 219 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 131/229 (57%), Gaps = 11/229 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D+ + + + G+ V A DA+EA + D+ IVD+ LP DG Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L+R+ RS + + P++ L+A+ DKV L GADDY+TKPF I E++AR++A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 120 SGLASQVISLPP------FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 A + P ++D+ R E+ ++D+ + LT E+ ++ L N GKV S+D Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 L+ +L+ ++ T+DV + RLR KI+ P+ +I TVRG+GY F Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYII-TVRGKGYKF 256 >UniRef50_Q1GD01 Two component transcriptional regulator, winged helix family n=28 Tax=Proteobacteria RepID=Q1GD01_SILST Length = 242 Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR L+VEDN L + + ++ GH VD A D AD ++ D+ ++D+ LPD DG Sbjct: 22 MRYLLVEDNDQLANAVLDRLTLDGHVVDRAPDLGTADDFMATTEYDMILLDIMLPDGDGR 81 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ P++VLTAR D+V VL GADDY+ KPF E+ AR +A+ RR S Sbjct: 82 QFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQRRRS 141 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + S D L++N ++L E + E I +V SK L+ +L+ Sbjct: 142 GGASNIHSFGDVVFDPLACTLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDRLFS 201 Query: 181 -DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 D + E + I+V +GRLRK ++ Q I TVRG GY L Sbjct: 202 YDVDASE-NAIEVYVGRLRKHLEGARAQ--IVTVRGLGYRLSL 241 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 129/218 (59%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED L ++++++ G+ V D E PD+ ++D LP GL + Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +PI++LTA++ D+V L AGADDY+ KPF++EE++AR++A +RRN Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 ++ ++ + RE+ +I+LTA E+ ++E L+ + +V+S+D ++ +++ Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +S+ I+V + LR K++A+ + +I TVRG GY+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_A9VUJ1 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus weihenstephanensis KBAB4 RepID=A9VUJ1_BACWK Length = 225 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVE+ +R+ + + + AG A+ + A L +H DI ++D+ LP DG + Sbjct: 4 ILVVEEGITIRNFIVLIMNRAGFNALAADTGETALELLGKHNVDIILIDVMLPGIDGFQV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + R N+ ++ I++L+AR +DKV+ L+ GADDY+ KPF E+ AR+QAL+RR G Sbjct: 64 CKSIRENNKNIGIIMLSARVQDRDKVQGLTIGADDYIEKPFSSIELTARVQALLRRVKGN 123 Query: 123 ASQVISL--PPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + S+ PF+++L + L VI LT EY I+ L+ N GK +S+D L+ +++ Sbjct: 124 KENMESIHSEPFRLNLQQERLYKEGVVIDLTPTEYIILRCLMENQGKPISRDELLNEIWG 183 Query: 181 DAELRESHTIDVLMGRLRKKIQAQ--YPQEVITTVRGQGYLF 220 + ++ I V + RLR+KI+ PQ + TV G+GY++ Sbjct: 184 VNYVVKTKVIGVNIRRLRQKIEPNPSGPQ-FLRTVWGKGYVW 224 >UniRef50_C6L9B4 DNA-binding response regulator DltR n=3 Tax=Clostridiales RepID=C6L9B4_9FIRM Length = 246 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYY-LN-EHIPDIAIVDLGLPDED 58 +++L++ED+ L ++ +++ G+ V+ D + A +Y LN ++ DIAIVD LP D Sbjct: 19 IKILLIEDDRELCRSIRRELEKNGYMVECCSDGETAMFYALNTDYGYDIAIVDRMLPVVD 78 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL++IR R ++ +P++++T + D+V+ L GADDY+ KPFHI E++AR++AL RR Sbjct: 79 GLTIIRAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELLARVRALTRR 138 Query: 119 NSGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + +++++ + D S R L + + LTA E ++ TL+R V S++ L+L+ Sbjct: 139 PHQMQDAELLTCGDLRFDTSTRTLQCSQRKVALTAKEAELLGTLMRQPEAVFSREQLVLK 198 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ E +D + LR++++ I T+ G GY E Sbjct: 199 VWGSDSDIEPGNVDNYISFLRRRLRELGSACQIKTIYGTGYRLE 242 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 135/234 (57%), Gaps = 16/234 (6%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVD--DAEDAKEADYYLNEHIPDIAIVDLGLPDED 58 M VL ED + +++ +++ G V+ D D NE+ D+ ++D+ +P +D Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEY--DVILLDIMMPGKD 58 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL +++ R + P+++LTAR+ D+++ L+ GADDY+ KPF +EE++AR+ A++RR Sbjct: 59 GLFILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRR 118 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDE------------VIKLTAFEYTIMETLIRNNG 166 ++G ++++ PF++D R ++ E V++LT E+ ++E L+R+ G Sbjct: 119 SAGEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPG 178 Query: 167 KVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +V ++ ++ ++ ++ +DV + RLRKKI + + I +VRG GY F Sbjct: 179 RVFTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >UniRef50_A8SMS1 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMS1_9FIRM Length = 216 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 116/201 (57%), Gaps = 4/201 (1%) Query: 25 HQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESW 84 + VD ED A L I DIA++D+ +P+ +G + RR R N + PIL+LTA+ Sbjct: 14 YDVDHMEDGDSALMALESGIYDIAVLDVMMPEMNGFEVARRARKNGIKTPILMLTAKSQL 73 Query: 85 QDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSIN 144 DKVE L +GADDY+TKPF +E++AR++AL RR+S +++ +D + L+ + Sbjct: 74 DDKVEGLDSGADDYLTKPFQTKELLARIRALGRRSSSFQEDILNYGDLTIDKTTAMLNCD 133 Query: 145 --DEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQ 202 + ++L+ E I+E + NNG++++++ L ++++ E + ++V M RKK+ Sbjct: 134 TTGQNVRLSEKELRILEYMFNNNGQIMTREQLAVKIWGFESETEYNNVEVYMSFTRKKLT 193 Query: 203 AQYPQEVITTVRGQGYLFELR 223 I VRG GY ELR Sbjct: 194 FVGSNVEIKAVRGLGY--ELR 212 >UniRef50_A9GK22 Response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK22_SORC5 Length = 265 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED+ L L + ++DAGH V A D E + PD+ I D+ +P DG S Sbjct: 36 RILLIEDDTALADVLSLAVEDAGHAVLRACDGVEGLRRIEGAGPDLVISDVNMPRLDGFS 95 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 L RR R +PI++LT+R++ D+ L GADDYV KPF ++AR+ AL+RR Sbjct: 96 LCRRLREAKNLVPIILLTSRDAEIDQALGLELGADDYVVKPFSTRVLLARVHALLRRQEI 155 Query: 119 --NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + A V++L Q+D R E+ + +T E+ ++E L+ G V S++ L+ Sbjct: 156 RAGASRAGCVVALGALQLDPERLEVRYRGAPVTVTLTEFRLLEALVARPGVVFSRNQLLE 215 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGY 218 D ++ +D + RLR+K++A P E I TV G GY Sbjct: 216 LARNDDSTVDARLVDTYVRRLRRKMEAVDPAFERIETVIGAGY 258 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ +L L +Q + VD A+D + Y D+ +VD+GLP DG+ Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R R + + PIL++TA+++ +K+ L AGADDY+TKP I E+ AR++AL+RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM--LQL 178 + ++ + +D E++ D +KLT EY+++E +RN +V S+ ++ L Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + D L +S + + LR++++ I V G GY Sbjct: 181 FDDPPLEDS--VKAHVKGLRRRLKQAGADGWIENVYGMGY 218 Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 20/149 (13%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L V+D+ +L L ++ G + D+ + L + PD+ I+D+ +P DG+ L Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 IRRWRSND------VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 R++ SLPIL LTARE+ EV +AGADDYV KP E++ R+ + Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTAREN--AAAEVFAAGADDYVVKPIVGPELITRINNRL 520 Query: 117 RR------------NSGLASQVISLPPFQ 133 R +GL +QV S FQ Sbjct: 521 ERARLLKRLSSRDAQTGLVNQVQSQQDFQ 549 >UniRef50_Q0IC97 DNA-binding response regulator n=3 Tax=Synechococcus RepID=Q0IC97_SYNS3 Length = 240 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 130/226 (57%), Gaps = 10/226 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-HIP-DIAIVDLGLPDEDGL 60 VL+ +D + L++++Q G V A D A L E P D+A++D + GL Sbjct: 8 VLLADDEVNIVTLLEMELQAEGFTVVTATDGISALKKLREPDTPVDLALLDWNMAGITGL 67 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 + RR R DVSLP++++T+R+ D++ L GADD+++KPF++ EV+AR++AL+RR Sbjct: 68 DICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRRAT 127 Query: 119 ------NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 ++ +S ++ + ++ + R +IN + LT E+ +++ +R+ + +S+ Sbjct: 128 FCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALSRG 187 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 L+ ++ D + + +DV + LRKK++A + VI TVRG G+ Sbjct: 188 QLIQHVWGDDYFGDENVVDVFVRYLRKKLEAGGSERVIQTVRGVGF 233 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 124/220 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VED+ L L + + G+Q D D Y D+ I+D+ LP DG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ + R +S+P+L+LTAR++ DK+ L +GADDY+TKPF E++A ++AL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + ++ ++L +L+ + I L+ E+++ + L+ N G+VVSKD L+ +++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E + ++ + LRKK++ I T+R GY F Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_D2ERE1 DNA-binding response regulator n=1 Tax=Streptococcus sp. M143 RepID=D2ERE1_9STRE Length = 227 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 2/219 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LV+ED AL+R + + ++ AG+QVD D K+ + ++ D+ I+DL LP E G + Sbjct: 4 ILVIEDEALIRDEIVILLEKAGYQVDKLTDFKDTSQQVLQYDTDLIILDLNLPGETGFQI 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + +S S+PILVLT+RE +D++ L GAD+Y+TKPF E +AR++ +++R G Sbjct: 64 CKNLKSKR-SVPILVLTSREQLKDEIHALKLGADEYLTKPFKKERFLARIENILKRYEG- 121 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 ++ F +D + L IN I L + ++ETL+ VV+K+ L ++L+ Sbjct: 122 RQNLLEKDNFLLDRNTYTLYINGHSILLPQNQGKLLETLLVATDSVVTKEELSMKLWNTT 181 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E + + + V + RL+K ++ + +VRG GY E Sbjct: 182 EFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220 >UniRef50_P0A5Z7 Transcriptional regulatory protein prrA n=41 Tax=Actinomycetales RepID=PRRA_MYCBO Length = 233 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 120/204 (58%), Gaps = 3/204 (1%) Query: 23 AGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 +G +V A D EA E+ PD ++D+ +P DG+S++ R+ D +P+ VL+AR Sbjct: 30 SGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARS 89 Query: 83 SWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLA---SQVISLPPFQVDLSRR 139 S D+V L AGADDY+ KPF + E++AR++AL+RR A S+ I++ P +VD+ R Sbjct: 90 SVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGR 149 Query: 140 ELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRK 199 +N + LT E+ ++ L + V+S+ L+ ++ +++ +DV +G LR+ Sbjct: 150 RARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRR 209 Query: 200 KIQAQYPQEVITTVRGQGYLFELR 223 K++A ++ TVRG G++ ++ Sbjct: 210 KLEAGGGPRLLHTVRGVGFVLRMQ 233 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 124/220 (56%), Gaps = 8/220 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +K + G VD + + L D I+DL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R WR P+L+LTAR++ ++VE L GADDY+ KPF + EV AR++AL+RR S Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GLASQVISLPPFQVDLSRREL--SINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G AS L QV L+ L ++ E + L E+ ++E L+RN G+V+ + + +L Sbjct: 121 GQASS--ELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKL 178 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 Y + S+ ++V + LR+K+ +++ I TV G GY Sbjct: 179 YNWDDDVSSNAVEVHVHHLRRKLGSEF----IRTVHGIGY 214 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ L L+ ++ G+ V A D + A E + I+DL LP GL + Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-NSG 121 +R RS +V PI++LTAR DKV L GADDY++KPF+I+E++AR++A++RR + Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 SQ +S+ ++D R + N + + L++ E+ ++E L R+ G+ V ++ + +++ Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQE--VITTVRGQGYLF 220 + TID + RLR K++ P+E I TV G GY F Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDN-PKEPRYILTVHGSGYRF 224 >UniRef50_O06978 Uncharacterized transcriptional regulatory protein yvcP n=86 Tax=Firmicutes RepID=YVCP_BACSU Length = 237 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+ + L +Q G++V AE + E PD+ ++D+ LP DG Sbjct: 3 RILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFY 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 R+ R+ + PI+ ++AR ++V + G DDY+TKPFH+E VMA++++++RR G Sbjct: 63 WCRQIRTIS-NAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121 Query: 122 -------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 S+++ L + + E N I + E+ ++ +R + K+VS+D L Sbjct: 122 EYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDEL 181 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + L+ D + + +T+ V + RLR+K++ + I+T+RGQGY F++ Sbjct: 182 LEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQV 229 >UniRef50_B0RVC3 Two-component system response regulator n=129 Tax=Bacteria RepID=B0RVC3_XANCB Length = 271 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 128/218 (58%), Gaps = 12/218 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG-- 59 RVL+++D +R L + ++ G++V A A+E L ++ ++D+GLPD DG Sbjct: 45 RVLIIDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLATLAGQGAELVVLDIGLPDRDGHE 104 Query: 60 -LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 L IR+W S +P+++LT R +KV L AGA+DYVTKPF ++E+MAR++AL+R+ Sbjct: 105 VLREIRQWSS----VPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 160 Query: 119 NSG---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 + V + L RE++++ E + L+ EY ++ L ++ G+VV++ L+ Sbjct: 161 AGAGNTVEESVFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQLL 220 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVIT 211 +++ ++H + +L+G+LR+K+ A P ++T Sbjct: 221 REVWGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVT 258 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 134/217 (61%), Gaps = 4/217 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ ++ ++ ++ G VD +D A L D+ ++DLGLP DG+ + Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R+ ++LP+L+LTAR++ D+V+ L AGADDY+ KPF ++E+ ARM+AL+RR SG Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 + +I +D + +++++ + L+A E+ ++E L+ G V+SK L ++Y Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E S+T++V + LRKK+ + ++I VRG GY+ Sbjct: 246 EEIGSNTVEVYIHALRKKLGS----DLIRNVRGLGYM 278 >UniRef50_C1XYD1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYD1_9DEIN Length = 226 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 7/221 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--ED 58 MRVL+VED+ L + ++D G VD A DA D+ I+D+ LP+ + Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G L R R+ +PIL LTAR K+ L G DDY+TKPF E+ AR++AL+RR Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 119 NSGLASQVISLPP-FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G A+ +I LP + +DLS ++ + + LT EY ++E L N G+ S++SL+ + Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ++P ++ +DV + LR+K+ ++ + TVRG GY Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKLG----EDFVETVRGLGY 217 >UniRef50_C1A8B6 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8B6_GEMAT Length = 245 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVEDNALL ++ ++ G+QV A +E + ++DL LPD DG + Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R + V P+L+LTA DKV GADDYVTKPF + E +AR+QAL+RR S Sbjct: 74 LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRR-SRT 132 Query: 123 ASQVISLPPFQ-----------VDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSK 171 A +P Q +DLS R +++ + L EY ++ L+R +G + S+ Sbjct: 133 AKPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASR 192 Query: 172 DSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEV--ITTVRGQGY 218 + L+ +++ + S T+D M LR+K++ P E + TVR GY Sbjct: 193 EELLREVWGYDDSVVSRTVDTHMAELRRKLETD-PSEPRWLLTVRKTGY 240 >UniRef50_B1XY63 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=B1XY63_LEPCP Length = 232 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 135/233 (57%), Gaps = 16/233 (6%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR L+ ED+A+L L +Q AG +V+ A++ A+Y L D+ IVDLGLP DGL Sbjct: 1 MRALLAEDDAILADALSANLQAAGFEVEVADNGAVAEYLLIRQSFDVGIVDLGLPMVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R R LP+++LTA + + +V L+AGADDY+TKPF E+ AR++A++RR+ Sbjct: 61 TVVSRVRQAKPKLPLIILTALDGLEHRVAGLNAGADDYLTKPFDFPELEARIRAVLRRSQ 120 Query: 121 G--LASQVISLPP-------FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSK 171 G AS P Q D R ++ + I+L+ E+ +++ L+ KV++K Sbjct: 121 GGEPASASTDDSPAATVVAQLQFDRDTRRATVAGQPIELSPREWLLLDLLLSQRRKVITK 180 Query: 172 DSLMLQLYPDAELRES---HTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + Q + A+L ES +++V + RLR+K++ I TVRG GYL E Sbjct: 181 EQIA-QAW-SADLSESGGPSSLEVYIHRLRRKLEGSGVG--IRTVRGLGYLLE 229 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED+ +L LK + + VD D + + ++ + I+D+ LP G Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R++ +P+L+LTA +S + +VE L GADDY+ KPF ++E++AR++AL RR Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +I ++D S N + + E+ +++ L+ G+ V+K + LY Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + ES+TI+V + LRKK+ A + I ++RG GY+ E Sbjct: 181 ISAMVESNTIEVTIYSLRKKLGADF----IKSIRGVGYMVE 217 >UniRef50_D0MIF5 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIF5_RHOM4 Length = 231 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L L +++ G+QVD D EA+ + D IVD LP DG Sbjct: 1 MWILLVEDDERLARALARGLREEGYQVDRVADGVEAEARVQASHYDALIVDWRLPRMDGQ 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+RR R +PIL+LTA + + +V L AGADDY+ KPF EE++AR++AL+RR+ Sbjct: 61 TLVRRLREAGYQMPILMLTALDDLEHRVAGLDAGADDYLGKPFAFEELLARLRALLRRSP 120 Query: 121 -GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 A+ VI L P +++ RR++ + + V+ L EY ++ L R+ G+V+S+ + Q++ Sbjct: 121 VWQATDVIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 D +TIDV + LR+K+ P I TVRG GY L Sbjct: 181 GDPFYVSDNTIDVTVSGLRQKLSEATPALQIETVRGVGYALRL 223 >UniRef50_B9TDT4 Two-component system sensor histidine kinase/response regulator, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TDT4_RICCO Length = 233 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+L+VED+ +L L + +A + VD + KE + D+ ++DLGLP +G Sbjct: 10 VRILLVEDDVVLGDALVQSLVNATYAVDWFRNGKEGVLAVQSQSYDLVLLDLGLPFLNGF 69 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 I+R R+ ++P++VLTA ++ +D V GADDY+ KPF + E+ AR++A +RR S Sbjct: 70 EFIKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVS 129 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +S+ ++D R + E + L+ E++++ETL GK+V+KD+L+ L Sbjct: 130 AHFSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN 189 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + I+V + RLRKK+ I+ VRG GY+ E Sbjct: 190 WDHDIGPNAIEVYVHRLRKKLGD--CDVTISNVRGLGYMME 228 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ + + L + +AG+ + A+ ++A L+ + DI ++D+ LP DG+ Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L + R PILVL+A S DK+++L GADDY++KPFH EE+++R++AL RRN Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 121 ---GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Q +S +D +++ ND+ I+ + EY + L+ N KV+S+ ++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ ++ +DV + +R KI + Q++I TV+G GYL + Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKID-ETEQKIIHTVKGTGYLIK 223 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED L L ++ G + D A + DI ++DL LP G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR---- 118 ++ R+ S+P++++TAR+S DKV L GADDYVTKP+ E++AR++A++RR Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +S ++ V+ P ++D+ R +S+N + I L E+ ++E L+RN+G+V+++ L+ ++ Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 + + ++ T+DV + RLR KI+A V + TVRG GY E Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_C4ZLE7 Two component transcriptional regulator, winged helix family n=1 Tax=Thauera sp. MZ1T RepID=C4ZLE7_THASP Length = 225 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 10/221 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L + ++ G +V+ D AD L + D ++D+GLP G Sbjct: 1 MRLLLVEDDPALAEGIAEFLRGQGDEVEVEGDGMRADRLLQNNGYDFVLLDVGLPGLGGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+RR R +P++V+TAR++ D++ L GADDY+ KPF + E+ ARM+A+ RR Sbjct: 61 ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ ++ +DL R ++ + L+ E+ ++E L+R +G+ V++++L Sbjct: 121 GAGAR-LAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRENLQ----G 175 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 D + ++V + RLR +++A +I TVRG GY E Sbjct: 176 DG---SGNALEVCISRLRPRVEAA--GLLIRTVRGFGYRLE 211 >UniRef50_A5FFE2 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteroidetes RepID=A5FFE2_FLAJ1 Length = 224 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED + ++ +D G + + A + +A + ++ + D ++DLGLPD DG Sbjct: 1 MKILIIEDEQDIAQSIQSYFKDNGVKCETAHNYVQAIHKIDNYDYDCILLDLGLPDGDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R RS D + +++++A+E+ + ++E S GADDY+TKPFH+ E++ RMQAL+RR + Sbjct: 61 DILRELRSKDKTDGVIIISAKETLETRLESFSLGADDYLTKPFHLAELLVRMQALVRRRN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + ++++ + + +N + ++LT E ++ LI NN KV+SK ++ L Sbjct: 121 FKGSNSVVFQEIRIEVFTKTVLVNGQKLELTRKELNLLLFLIGNNDKVLSKAAIAEHLSG 180 Query: 181 D-AELRESHTIDVLMGRLRKKIQAQY---PQEVITTVRGQGYLFE 221 D A++ +SH D + ++ + + I TV G+GY +E Sbjct: 181 DMADMLDSH--DFIYAHIKNLKKKLAKAGSGDYIKTVYGEGYKWE 223 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 6/222 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+ ED+ L L ++Q+ G+ V+ +D A D+ ++D+ LP G Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + ++ R +++ +PIL+LTAR DKV L +GADDY+TKPF + E++AR++AL+RR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 L + L VD R E++ + + L+A EY ++ LI + G+ V+++ L+ Q+ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGY 218 + + ++ T+DV + LR+K++ +YP+ + TVRG GY Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPR-YLQTVRGLGY 224 >UniRef50_B9P733 Predicted protein n=13 Tax=cellular organisms RepID=B9P733_POPTR Length = 239 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 143/238 (60%), Gaps = 20/238 (8%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ ++ +K+ + DAG+ VD A+ A L + D+A++D+GLP DGL Sbjct: 1 MRLLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDLAVIDIGLPGIDGL 60 Query: 61 SLIRRWRSNDV---SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 L RR RS+ V ++P+L+LTAR++ QD+V+ L GADDY+ KPF + E++AR++AL+R Sbjct: 61 ELTRRLRSSAVESSAMPVLILTARDALQDRVQGLDQGADDYMVKPFELPELLARLRALLR 120 Query: 118 RNSGLASQVISLPPFQVDLSRRELSI-----NDEV------IKLTAFEYTIMETLIRNNG 166 R+ S V+S P ++D + R +DE I L E+T++E L+ + Sbjct: 121 RSQAATSAVLSFGPIELDTAGRRAGARQPAQDDESEGKLLPIDLGPREWTVLEYLLIHAP 180 Query: 167 KVVSKDSLMLQLYP-DAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFEL 222 K SKD L+ L D E+ + ++V + RLR K++ P V + ++RG GY EL Sbjct: 181 KPASKDKLLQALTGWDREI-TPNAVEVYVSRLRSKLE---PHGVALRSIRGFGYRLEL 234 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDG 59 MR+LV ED L L+ + + GH V + + +A D ++ D ++D+ LP DG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEF-DALLLDVMLPGMDG 59 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + RR R +PIL+LTAR++ D + L GADDYVTKPF E++AR++A+ RR Sbjct: 60 FEVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRT 119 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + +D + E+ D I LT E+ +++ L++N G+ VS+ SL+ ++ Sbjct: 120 GPHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVW 179 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E++T+D + LR+K+ Q ++I TVRG GY Sbjct: 180 GYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_C3X641 Two component transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X641_OXAFO Length = 231 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 12/227 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +R+L VED + +R +K+ +++ ++V +A+ K PD+ ++DLGLPD DGL Sbjct: 5 IRILTVEDESNIRRFVKLALENENYEVFEADGVKRGLIEAATRRPDLVVLDLGLPDGDGL 64 Query: 61 SLI---RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 I R W S +PI+VL+AR + DK+ L AGADDY+ KPF E++AR++A +R Sbjct: 65 EFITDLRAWSS----IPIIVLSARSNENDKISALDAGADDYLVKPFGAGELLARVRAQLR 120 Query: 118 R-NSGLASQ-VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 R G ++ I +D RR + N I LT EY I+ + +V++ L+ Sbjct: 121 RQQPGTPNEPFIRFSDVCIDPVRRVVEKNGAPIHLTPIEYRILIFMTSQPDRVITHQQLL 180 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLF 220 ++ + H I V M LRKKI+ A P+ +IT G GY F Sbjct: 181 KAIWGPGHTEDMHYIRVHMANLRKKIEENASMPRHLITEA-GIGYRF 226 >UniRef50_C4I5X0 DNA-binding response regulator n=78 Tax=Bacteria RepID=C4I5X0_BURPS Length = 232 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 132/218 (60%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED+ L ++ QI+ GH D A ++ D+ ++DL LPD GL Sbjct: 14 MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 73 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +R R+ ++P+++LTA + +++ L+AGADDY+ KPF + E+ AR+ A+ RR S Sbjct: 74 DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 133 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + ++ L VD++ R ++ + LTA E+ ++ETLI++ G ++SK L +LY Sbjct: 134 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 193 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 ++ S+TI+V + RLRKK+ A E+I TVRG GY Sbjct: 194 FSDEVGSNTIEVHVSRLRKKLGA----ELIETVRGLGY 227 >UniRef50_B1QVC8 DNA-binding response regulator n=9 Tax=Bacteria RepID=B1QVC8_CLOBU Length = 223 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEA-DYYLNEHIPDIAIVDLGLPDEDGL 60 +++++ED ++R LK + ++V D + ++ LNE+ PD+ ++D+ LP DG Sbjct: 3 KIMIIEDEVIIREELKSFLSKYNYEVVAPSDFENVIEFILNEN-PDLILLDINLPIFDGY 61 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R R +PI+++T+R+S D++ ++ GADD+V+KP++ + ++AR+ AL++R+ Sbjct: 62 YICREIRKTS-DIPIIIVTSRDSDMDELMSMNLGADDFVSKPYNTQILLARIAALLKRSG 120 Query: 121 GLA--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G + S+ + F+++LS +S D+ I+LT E I+ LI N G +VS++ LM L Sbjct: 121 GSSNTSKYLIYNNFKINLSNATISREDKEIELTKNEIKILSCLIENKGSIVSREILMEYL 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + + T+ V + RLR+K++ ++ I T RG GY+ Sbjct: 181 WKSDYFVDDSTLTVNITRLRRKLEGIGIKDAIETRRGLGYI 221 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 329 5e-89 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 325 1e-87 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 324 2e-87 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 319 4e-86 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 316 3e-85 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 315 6e-85 UniRef50_Q026B5 Two component heavy metal response transcription... 315 7e-85 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 314 1e-84 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 313 2e-84 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 312 7e-84 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 310 2e-83 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 310 2e-83 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 310 2e-83 UniRef50_Q5PMJ1 Virulence transcriptional regulatory protein pho... 310 2e-83 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 310 3e-83 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 310 3e-83 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 309 3e-83 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 309 4e-83 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 309 4e-83 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 309 4e-83 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 309 6e-83 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 309 6e-83 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 309 6e-83 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 308 8e-83 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 308 8e-83 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 308 9e-83 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 307 1e-82 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 307 2e-82 UniRef50_B4EVF9 Two-component response regulator n=19 Tax=Entero... 307 2e-82 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 306 3e-82 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 306 4e-82 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_B8G179 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 304 1e-81 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 304 1e-81 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 304 2e-81 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 304 2e-81 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 303 2e-81 UniRef50_UPI00017468BB two component transcriptional regulator, ... 303 3e-81 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 303 3e-81 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 303 4e-81 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 302 6e-81 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 302 6e-81 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 301 1e-80 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 301 1e-80 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 301 1e-80 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 301 1e-80 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 300 2e-80 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 300 2e-80 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 300 2e-80 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 300 3e-80 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 299 5e-80 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 299 5e-80 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_B8G869 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 298 7e-80 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 298 9e-80 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 297 1e-79 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 297 1e-79 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 297 2e-79 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 297 2e-79 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 297 2e-79 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_UPI00016C506D two component transcriptional regulator, ... 296 4e-79 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 295 5e-79 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 295 5e-79 UniRef50_UPI0001B559F0 two-component system, response regulator ... 295 5e-79 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 295 7e-79 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 295 8e-79 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 294 2e-78 UniRef50_Q6AQP4 Probable two-component system response regulator... 293 2e-78 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 293 3e-78 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 293 3e-78 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 293 4e-78 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 293 4e-78 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 292 5e-78 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 292 6e-78 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 292 6e-78 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 292 6e-78 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 292 7e-78 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 292 8e-78 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 291 1e-77 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 291 1e-77 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 291 1e-77 UniRef50_A4CE30 Probable two-component response regulator transc... 291 1e-77 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 290 2e-77 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 290 2e-77 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 290 3e-77 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 290 3e-77 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 289 4e-77 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 289 4e-77 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 289 4e-77 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 289 5e-77 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 289 5e-77 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 289 5e-77 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 289 6e-77 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 289 6e-77 UniRef50_B9ZMZ7 Two component transcriptional regulator, winged ... 288 6e-77 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 288 7e-77 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 288 7e-77 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 288 8e-77 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 288 1e-76 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 288 1e-76 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 288 1e-76 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 288 1e-76 UniRef50_C9ZA01 Putative two-component system response regulator... 287 1e-76 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 287 1e-76 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 287 2e-76 UniRef50_D1C280 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B0C620 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 287 2e-76 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 287 2e-76 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 287 3e-76 UniRef50_A1SID6 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_C8W872 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 286 3e-76 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 286 3e-76 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 286 4e-76 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 286 4e-76 UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnos... 286 5e-76 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 286 5e-76 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_Q20WN2 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 285 7e-76 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 285 7e-76 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 285 7e-76 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 285 7e-76 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_B2V5Y8 Two component transcriptional regulator, winged ... 285 1e-75 Sequences not found previously or not previously below threshold: UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 322 7e-87 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 312 6e-84 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 309 6e-83 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 307 1e-82 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 301 1e-80 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 296 4e-79 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 296 4e-79 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 295 5e-79 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 295 8e-79 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 295 9e-79 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 295 9e-79 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 295 9e-79 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 295 9e-79 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 294 1e-78 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 294 2e-78 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 293 2e-78 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 293 2e-78 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 293 3e-78 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 293 3e-78 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 293 3e-78 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 293 4e-78 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 292 4e-78 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 292 4e-78 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 292 8e-78 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 292 9e-78 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 291 1e-77 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 289 4e-77 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 289 6e-77 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 288 7e-77 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 288 9e-77 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 288 9e-77 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 288 9e-77 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 288 1e-76 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 288 1e-76 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 287 1e-76 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 287 1e-76 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 287 1e-76 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 287 2e-76 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 287 2e-76 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 287 3e-76 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 286 4e-76 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 285 5e-76 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 285 5e-76 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 285 5e-76 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 285 6e-76 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 285 6e-76 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 285 7e-76 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 135/221 (61%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED + + +++ G VD EA + D A++D+ LP DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R +SLPIL+L+AR +DK+E L++GADDY+ KPF ++E++AR++AL+RR + Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ V + ++L RE+ + I+LTA E++I+E L+R G+V ++ + +++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + +LRKKI Q++I TVRG GY E Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED L LK +++ + VD A D + D+AI+D+ LP GL Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R + P+L+LTA+++ +D+V L AGADDY+ KPF +E++AR++AL RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +A I PF++DL+ R ++ N E + LTA E+ ++E +RN KV+SK+ ++ +++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + LRKKI ITTVRG GY+F Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 129/218 (59%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED L ++++++ G+ V D E PD+ ++D LP GL + Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +PI++LTA++ D+V L AGADDY+ KPF++EE++AR++A +RRN Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 ++ ++ + RE+ +I+LTA E+ ++E L+ + +V+S+D ++ +++ Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +S+ I+V + LR K++A+ + +I TVRG GY+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 142/220 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VED + + +++ G+ V+ AED ++ + D+ ++D+ LP DGL Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R + ++P++++TAR +++E L+ GADDY+TKPF+++E++AR+QAL RR+S Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + ++ + V+LS RE+ + E+++LT E+ ++E L+R+ G+V+++ ++ ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ +DV + RLRKK+ A + +I TVRG GY Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDED 58 M++L++ED L LK ++ G+ VD A D +EA Y + + D+ I+D+ LP D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G+SL + R+ + PIL+LTA++ +DK+ L +GADDY+ KPF EE++AR++AL+RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 L V+ + +D + + D I LT E+ I+E L+RN +++SK+ ++ + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + S+ ++ + LRKK++ + + +I T+RG GY + Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIK 223 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 117/220 (53%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED A L+ + + G+ VD D +A + E D ++DL LP DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R P+L+LTAR D++ L AGADDY+ KPF E+ AR++AL+RR + Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + ++D + + + L+A E+ ++ L+R+ +V+++ ++ ++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 A S+ +D + +R+KI +I TVRG GY Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRL 249 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 136/222 (61%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED L + +++ + VD D +EA Y+ D I+D+ LP DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I+R R+ +PIL+LTAR++ DKV+ L GADDY+ KPF EE+MAR++ L+RRNS Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A VI++ +VDL + + + +IKL+ EY+I+E LIRN GK++ ++ + ++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ IDV + LRKKI Y ++I T+RG GY+ + Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRV 222 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVEDN L ++K ++ G VD A D E + D I+D+ LP G+ Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 SLIRRWR-SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + R R +PIL+LTA S +++VE L+ GADDY+ KPF + E++AR++AL+RRN Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + + ++L RE+S E + L++ E++++E +RN G V S++ ++ +L+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ +DV + LRKK++ E I TV GY + Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLK 222 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 135/223 (60%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L + ++ + VD D +EA ++ D+ I D+ +P+ DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 I+R R + + P+++LTA+++ +DK+ L +GADDY+ KPF +E+ AR++ LMRRN Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GLA+ VI + +D+S+++++ N E I LT EY ++E L++N ++S+D ++ ++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 S+ +DV++ +RKK+ + +I T RG GY + + Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 316 bits (811), Expect = 3e-85, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 140/222 (63%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L++ L ++ + VD + ++A Y+N D+ ++D+ +P +GL Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R+++ + P+L+LTA+++ D+V+ L GADDY+ KPF +E++AR++ LMRR + Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S V + VD + +++ D+VI L++ E+ I+E +IRN V+++D + ++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ IDV + LRKK+ +Q+ ++I TVRG GY+ + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRV 234 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 126/221 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ +L L + + V+ AED + Y D+ + D+ LP DG+ Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L +R RSN S PIL++TA++ D++ L AGADDY+ KP ++ E+ AR++AL+RR Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + ++D S E++ +++V+ LT EY+++E L+RN +V S+ ++ L+ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+ + LR K++ + I V G GY + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLK 221 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVV+D+ L+ L ++ G ++ +D L PD+ I+D+ +P G+ L Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 IRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ LPI+ LTA + +V +AG DDYV KP E++AR+ + R+ Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 Query: 121 GLAS 124 L S Sbjct: 622 LLQS 625 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED + L ++ AG+ VD A A +++ D+ ++D LPD DGL Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + RS P+L+L+AR + D+V+ L GADDY+ KPF E++AR++AL+RR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR-G 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + + +D RR+++ E I L E+ I+E ++RN G+ +S+ ++ ++ Sbjct: 120 QPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + LR KI ++ Q++I TVRG GY+ E Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+AL+ L + + V+ A D K A + + D+ ++D+ LP DG+ Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL ++ RS+ +PIL+LT R+S DK L AGADDYV KP EE++AR++AL+RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ ++D S E++ + + LT EY ++E L+RNN +V S ++ L+ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + + + LR K++A P +++ TV G GY + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLK 222 Score = 95.6 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 6/122 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +++LVV+D+ L+V + G ++ ++ + PD+ I+D+ +P G+ Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 SLIRRWRS--NDVSLPILVLTARE--SWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 L + RS +PIL LT ++V S GADD+V+KP I E++ R+ + Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILNRL 499 Query: 117 RR 118 R Sbjct: 500 ER 501 Score = 71.7 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV +D+ + R LK + G++V + +A PD+ ++DL +P +G Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 IRRWRS--NDVSLPILV 77 + + + +PI++ Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 44.8 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L++ED+ L L + A+ +EA + + PD+ I+DL LP+ DG + Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAG 94 ++ + +D S+P++V +A++ + L G Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLG 1299 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+A + + ++ G+ VD A D D A+VD+ LP+ DGL Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+RR R+ ++P+L L+AR S +D+V+ L AG DDY+TKPF E+ AR+QAL+RR S Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + +S +DL R +++ + ++L E++++E L+R+ G+ V+K ++ ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVLM RLR KI + I T+RG GY+F+ Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTR--IETLRGVGYVFK 225 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 142/219 (64%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED+ L L + DAG+ VD A D +E + + D ++D+GLP DG+S Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ WR N ++P+L+LTAR+ W DKV+ AGADDYV KPFH+EEV+AR++AL+RR++G Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A ++ P +D +S+ +KLT+ EY ++ L+ ++G+VVS+ L+ LY Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+TI+V +GR+RKK+ ++I TVRG GYL Sbjct: 210 DFDRDSNTIEVFVGRIRKKLDV----DIIQTVRGLGYLL 244 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 126/220 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ +L L ++ + VD D + Y + D+ ++D+GLP +DG+ Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L RR R+ +PIL++TA+++ D++ L AGADDY+TKP + E+ AR++AL+RR S Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ + Q+D +++ + + LT EY ++E +R+ G+V S+ L+ L+ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + LR+K++A + I + G GY Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRL 220 Score = 94.5 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D+ + + + +Q G + + E L PD+ I+D+ +P G+ L Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 IRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RS+ SLPI+ LTA + +V + GADD+VTKP + E++ R+ + R Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLERTR 501 Query: 121 GLAS 124 + S Sbjct: 502 LIQS 505 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L +K +++ +VD A D + ++ D+ ++D+ LP +G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R P+L+LTA S DK+ AGADDY+ KPF E+MAR++AL +R+S Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G+ + V+ + ++DL+ + D+ I+LTA E+ +++ L+RN G+VVS+ + ++ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ IDV + LRKKI +P ++I TV G GY+ + Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLK 228 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 129/222 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED +L ++ VD + ++A Y+N D+ ++D+ +P DG+ Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S + + R++ + P+L+LTA++S QDKV L+ GADDY+ KPF +EE+ AR+ AL RRN+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A I + P +++ +R + + E I LTA E+ ++ L N V+S+ ++ ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ IDV + LRKKI ++I TVRG GY+ + Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKT 222 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ L +K ++ + V+ A D + D+ ++DL LP DG+ Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R PIL++T ++ KV+ L AGADDY+ KPF+I+E++AR++AL+RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ ++ P ++ S +++ E+I LTA EY I+E +RN ++ S+ +L+ L+ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 E + + + LR+K++ +I TV G GY Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 102 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++++V+D+ L ++ ++ G + ED K L PD+ I+D+ +P+ G+ Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + R++ LPIL L+ + E AGADDY+ KP E++ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 55.2 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG-- 59 +L+V+++ +L + Q + G A D +A + PD+ ++D+G PD + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIE 106 L L++ R +P ++ + + ++ +V+V GA ++ KP E Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPE 480 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 134/232 (57%), Gaps = 12/232 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL ED + +++ +++ G V+ + A ++ D+ ++D+ +P +DGL Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R + P+++LTAR+ D+++ L+ GADDY+ KPF +EE++AR+ A++RR++ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GLASQVISLPPFQVDLSRRELSIN------------DEVIKLTAFEYTIMETLIRNNGKV 168 G ++++ PF++D R ++ +V++LT E+ ++E L+R+ G+V Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 VSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ ++ ++ +DV + RLRKKI + + I +VRG GY F Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 128/220 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LV+ED+ +L L+ + +AGH K + D ++D+ LPD G+ Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ R + + P+L+LTA S D+V L++GADDY+ KPF E++AR+ A+ RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + + P +DL+ R+++ ND + LT E++++E L+R G+VV++ L L+ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++V + RLR KI + + +I TVRG+GY+ Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL+VED + + ++ V D + + + D+ I+D+ LP DGL Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R V PI++LTAR D+V+ L GADDY+ KPF++EE+ AR+QAL+RR+ Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+ + Q+D R ++ + ++LT+ E++++E L+R+ +V+++ L+ ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKI----QAQYPQEVITTVRGQGYLFELR 223 ++ +DV + R+R K+ +A I ++RG GY +R Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLSIR 227 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 118/220 (53%), Gaps = 1/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED + LK +++ VD A D + + D+ ++D LP G+ Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R ++P++ LTAR++ D V L AGADDYV KPF EE++AR++A +R+N+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ +D N + LT E+ ++E L+RN +V ++ ++ ++ Sbjct: 121 PTTGP-LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ IDV + LR+K++A +I TVRG GY+ Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED L L Q++ +G D D EA + D I+DLGLP DGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ WRS + P+LVLTAR +K+E L+AGADDY+TKPF + E++AR+QAL+RR + Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++ + ++D++ ++ IKLTA E+ ++ L+++ GKVVS+ L+ +Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+T++V +GR+RKK ++I TVRG GY Sbjct: 181 QDFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRI 216 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L + ++ G+ VD A + +EA + D+ ++DL +P DGL Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + ++R R+ + P+L+LTA++ D V+ L AGADDY+ KPF +E++AR++ L+RRNS Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + I ++DLS++ + + E I+LT EY I+E L+ N G+++++D + ++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ IDVL+ +RKK+ E I T RG GY+ + Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGEC---EAIQTKRGLGYVVK 218 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 136/221 (61%), Gaps = 1/221 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED A + L + + G+ V+ AED + LN D+ I+D LP EDG+ Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+RR+R + + P+L LTAR++ ++V L AGADDY+TKPF +E++AR++AL+RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + V+ + DL + ++ + LTA E++++ +RN GKV+S+ + ++ D Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + S+T++V + LR K++A P+ VI T+RG+GY+ E Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPR-VIQTLRGRGYVLET 223 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ LL + + + VD A D + +N D+ ++D+ LP DG+ Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R+ R + IL+LTA+++ DKV L AGADDYV KPF +E+ AR++AL+RR + Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D S E++ D + LTA E+++++ +RNN ++ S+ +++ QL+ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 DA-ELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + E +TI + LR+K++ + I TV G GY + Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLK 223 Score = 76.0 bits (187), Expect = 8e-13, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R++VVED+ + ++ ++ G + ED+ L E PD+ I+D +P +G+ Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 LIRRWRSNDVS--LPILV----LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + R++ LP++ L+A +++ + GADD V+KP ++A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 Score = 43.2 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 17/107 (15%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LV+ ++ + L + ++ G QV A + A + PD+ ++DL + +ED L L Sbjct: 355 LLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKL 413 Query: 63 IRRWRSND----------------VSLPILVLTARESWQDKVEVLSA 93 + +P+LV T R ++ D L Sbjct: 414 LIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRL 460 >UniRef50_Q5PMJ1 Virulence transcriptional regulatory protein phoP n=211 Tax=cellular organisms RepID=PHOP_SALPA Length = 224 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 208/223 (93%), Positives = 220/223 (98%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVEDNALLRHHLKVQ+QD+GHQVD AEDA+EADYYLNEH+PDIAIVDLGLPDEDGL Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGL 61 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIRRWRS+DVSLP+LVLTARE WQDKVEVLS+GADDYVTKPFHIEEVMARMQALMRRNS Sbjct: 62 SLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNS 121 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GLASQVI++PPFQVDLSRRELS+N+EVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP Sbjct: 122 GLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 181 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 DAELRESHTIDVLMGRLRKKIQAQYP +VITTVRGQGYLFELR Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGYLFELR 224 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 105/220 (47%), Positives = 142/220 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED ALLR L+ ++ G+ VD AED + A Y E+ D+A+VDLGLP GL Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I+ WR PIL+LTAR WQDKV L AGADDY+ KPFH+ E+MAR+ AL+RR+S Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S VI P +D + + I+ ++LTA+EY +E L+ G+ VSK L LY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ I+V +GRLRKK+ + ITT+RGQGY F Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRF 220 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +L+VED + L+++++ G+ V + E E + ++D+ LP GL Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++RR R D P+++LTAR+S DKV L GA+DYVTKPF IEE++AR++A +R+N Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 LASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + ++ +V+ RE+ D+ ++LT E+ ++ ++++ +V++++ ++ + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + +++ +DV + +RKK+ Y +++I T+RG GY + Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 9/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVVED+A LR L + G+ ++ AED +A P + I+D+ LP DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L R R+ S+PIL+LTAR S DKV L AGADDY++KPF + E++ARM+AL+RR+ Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 LASQV-----ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 SQ + + ++ + R + N + + E+ + +++N +V S++ L+ Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQY--PQEVITTVRGQGYLFE 221 +++ + T+DV + LR+KI+A P+ +I TVRG GY FE Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLI-TVRGTGYKFE 255 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 119/214 (55%) Query: 7 EDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRW 66 ED+ L ++ + + +D A D E D+ ++D LP DG+ L ++ Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQV 126 R+ S PI++LTAR++ D+V L AGADDY+ KPF EE++AR++AL+RR+ G+ S V Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 127 ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRE 186 + Q+D ++ D I LT EY ++E +RN ++ S DSL+ +++P + Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 187 SHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ + LR+K++ +VI+TV G GY Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRL 215 Score = 100 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D++ + L+ +Q G +++ D + L + PD+ ++D+ +P G L Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 IRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 + RS LPIL ++A + EV S GADDY+ KP E++AR+ Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARV 682 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLV+ED+ + +L ++++G+ VD ++ K + D+ +VD LP+ DGL Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R+ P+LVL+A D+V+ L AG DDY+ KPF E++AR++AL+RR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + + ++DL R + N I L E+ ++E +RN G+V+++ L+ ++ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +++ IDV + RLR KI + ++ T+RG GY+ Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ L + L + + + V+ D A + + D+ ++D+ LP DG+ Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R+ RS+ +PIL+LT +S +K L AGADDYV KPF EE++AR++AL+RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A ++ Q+D S E+ N ++ LT EY ++E +R++ +V S ++ ++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFELR 223 + + + LR K++ P +++ TV G GY + + Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQ 224 Score = 91.4 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL V+D+ + L+ + G QV +D ++ L + PD+ I+D+ +P +G+ Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 LIRRWRS--NDVSLPILVLTAR--ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 L + R+ LPIL LT ++V S GADD+V+KP E++ R+ + Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRIINRLE 499 Query: 118 R 118 R Sbjct: 500 R 500 Score = 79.8 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV +D+ L+R L+ ++ G++V KEA + PD+ ++DL +P +G Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 IRRWRS--NDVSLPILV 77 + + +PI++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 48.2 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+A L + + A+ +EA + E PD+ I+DL LP+ DG + Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYV------TKPFHIE--EVMAR 111 ++ + + ++P++V +A++ + + + L G +++ TK F E++ R Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1621 Query: 112 M 112 + Sbjct: 1622 I 1622 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 309 bits (793), Expect = 4e-83, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED + L+ + G+ AED + E D+ ++D+ LP DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R LP+L+LTAR+ + KV L AGADDY+TKPF EE++AR++AL+RR Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + ++DL R + ++L++ E+ ++E L+R+ +V+S+ ++ ++ Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 A S+ +DV + LR+K+ +ITTVRG GY F+ Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D +R ++ +Q AG+ ++A D A L+ D+ I+D+ +P DG++ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 +R R+ ++ P+++LTAR DK+ L GADDYV KPF E++AR++A++ R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S + ++ +D + + + E + LT E+ ++ L N G +S++ ++ ++ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + E T+D + LR + + I TV G GY F+ Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFD 294 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ +L L + + VD +D + Y + D+ I+D+ LP+ DG+ Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL +R+R+ ++PIL+LTA+++ KV+ L AGADDYV KPF E++AR++AL+RR S Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +++ ++ S E++ N + LT EY ++E L+RN V S + L+ +L+ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + T+ + RLR K+ A P + I T+ G+GY + Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLK 222 Score = 96.8 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V++++D+ L ++ G +V D ++ L PD ++D+ +P +G Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + RS+ LP+L L+ + + + G DDY+ KP E+ R+ +RR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRRL 643 Query: 120 SGLAS 124 + + Sbjct: 644 QRVRA 648 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 123/223 (55%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ +L L +Q + VD A+D + Y D+ +VD+GLP DG+ Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R R + + PIL++TA+++ +K+ L AGADDY+TKP I E+ AR++AL+RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ + +D E++ D +KLT EY+++E +RN +V S+ ++ L+ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + ++ + LR++++ I V G GY + Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 88.7 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L V+D+ +L L ++ G + D+ + L + PD+ I+D+ +P DG+ L Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 IRRWRSNDVS------LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 R++ LPIL LTARE+ +V A DDYV KP E++ R+ + Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 117 RRNS 120 R Sbjct: 521 ERAR 524 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED+ L+ L+ + D + V+ A D + A + D+ + D+ LP DG+ Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L ++ RS +PIL+LT ++S D+ L AGADDYV KPF EE+ AR++AL+RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ Q+D E+ D ++KLT EY ++E ++RN +V S ++ ++ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + + + LR+K++A P ++I TV G GY + Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLK 222 Score = 93.3 bits (232), Expect = 5e-18, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+++V+D+ + + + G +V ++ + L PD+ ++D+ +P+ G+ Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 LIRRWRS--NDVSLPILVLTARESWQDKV-EVLSAGADDYVTKPFHIEEVMARMQALMRR 118 L R R+ LPI+ LTA + D V +V ++GADD+++KP E++ R+ + R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607 Query: 119 NSGLASQVISLPPFQVDLSRRELSIND 145 +D R LS ++ Sbjct: 608 TRLQRRLS------TIDPLARVLSRHE 628 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 VLVVED L L+ ++ G+ V A D ++A E PD+ +VD LP G+ Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR- 118 + RR R + +PI++LTAR D+V L GADDYV KPF + E+ AR++A++RR Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 GLA VI +D + D I L E+ +++ L+++ G+V S++ L+ + Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + E+ T+DV +GRLRK + + ++ I TVR GY F++ Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 308 bits (791), Expect = 7e-83, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 113/221 (51%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D L LK + G VD A D D ++D+ LP +G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R PIL+LTA++ D+ E L GADD + KPF ++AR++AL+RRN Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ +D + ++ + I LT E++ +E L+RN G V+ K ++ ++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +S+ ++V +G LRKKI + + ITT+RG GY E Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLE 221 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN---------EHIPDIAIVDL 52 R+LVVED A++R + + +Q G VD A D + A Y PD+ ++DL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 LP +GL R R V++PIL+L+A+++ D+V L GADDY+TKPF E++AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 QALMRRNSGLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 +AL+RR+ ++ V+ ++ + ++D + L+ E+ ++E +R+ +V Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLF 220 S+D L+ +++ + +S TIDV + LR+KI+A + TVRG GY Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 121/219 (55%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L + ++ VD D +E Y D+ I+D+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R ++ P+L+LTA + +V+ L+ GADDY+ KPF + E++AR++AL+RR + Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +D + R++ + I LT EY I+E L+ N +VV+K+ L L+ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + S T+ + LRKKI + +++I TVRG GY+ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYV 229 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 101/220 (45%), Positives = 146/220 (66%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +LK +Q+A + +D A D + Y E D AI+D+GLP DG+ Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLI+ R VS PILVLTAR+SWQDKV L AGADDY+TKPFH EE++ARM+AL+RR + Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++S PF V+L+ E+ ++ ++ L++ EY + E L+ + G+V SK L +Y Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +S+ I+V + RLRKK+ ++I T+RGQGY Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 1/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLV+ED+ L+ +++ GH D A D + + D+ IVD LP DGL Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+I+ R+ P+L+L+A D+V+ L AG DDY+TKP+ E++AR++AL RR + Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Q IS+ +D ++ + E I L EY ++E L+++ G+VV++ L+ ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +++ IDV + RLR KI + + ++ TVRG GY Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGY 255 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 125/221 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED ++ +Q VD + D EA + D ++D+ LP DGL Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R+ R P+L+L+AR ++VE L+AGADDY+ KPF + E++AR++++ RR++ Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S ++ + +D R+ +LT EY ++E L+R G++ + +++ +++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + RLR+K+ + +++ TVR GY+ + Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMK 221 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + + ++ +G VD A + + + +AI+D+ LP DGL Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I R + PI++L+A+ S +D+V L G DDY++KPF E++AR+QAL+RR++ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + +++ ++L RE+S + ++L E+ ++E +RN GKV+SK +M ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ +DVL+ RLR KI Y ++++ T+RG GY+ + Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLK 222 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D+ L + +K+ ++ G VD A D K Y+ ++ + I+D+ LP+ DG + Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 IRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ N+ +PI++LTA+ DK+ L GADDYV KPF E++AR++AL+RR+ Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +++ VD ++ + D + L E+ ++ LI+N +V +++ ++ ++ Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFELR 223 + + + T+D + R+RKK++ + +I TV G GY FE++ Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ + L ++ H VD A D E Y D+ ++DL LP DG+ Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L +R R+++ + IL+LTAR++ +K+ L AGADDY+ KPF +EE+ AR++AL RR+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ Q+D ++ ++ + LT EY I+E ++N +V+++ +++ +L+ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 +L T+ + LRKK++A ++ I TV G GY Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + +QVD D ++ Y+ D+ ++D+ LP DG+ Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL + RS++ +PIL+LTAR + QDKV+ L AGADDY+ KP I E+ AR++AL+RR+S Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S V++ +D S ++S N + +KLT EY ++E L+ N + S D ++ +L+ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 + ++T+ + LR+K++A E I TV G GY Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRL 221 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RV++V+D+ + ++ +Q G Q +D ++ L PD+ ++D+ +P +G+ Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 LIRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + R+ LP+L +TA+ Q + +V AGADDY+TKPF E+ R+ ++R Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 SGLASQV 126 LA++ Sbjct: 617 QNLATRT 623 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 120/219 (54%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +LV+ED A L ++ ++ G++V A D + PD+ ++D LP GL Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR RS +P++++TAR+ D+ L AGADDYV KPF I+E+++R++ +R+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + +D RE++ + ++LTA EY ++ L+ + +V+++ ++ ++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +S+ I+V + LR KI+ + +I TVRG GY+ Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV+ED+ + + + + V+ A DA+ YL D+ I+DLGLP DGL Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S + R SLPIL+LTAR++ DKV L AGADDY+ KPF + E++AR++AL+RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D R +++ N + + LT EY I+E L+R+ +++S+ ++M +P Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 E+ T+ V + LR K++A P +I TV G GY Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRL 221 >UniRef50_B4EVF9 Two-component response regulator n=19 Tax=Enterobacteriaceae RepID=B4EVF9_PROMH Length = 224 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 159/223 (71%), Positives = 194/223 (86%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++EDN LLRHHL VQ +DAGHQVD A+DAKEAD+++ E PD+AIVDLGLPDEDG+ Sbjct: 1 MRILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGLPDEDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIRRWR N++++PI+VLTARESWQ+KV L+AGADDYVTKPFH EE++AR+QALMRRN Sbjct: 61 SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ASQ++++ PF++DLSR+E I E IKLTAFEYTI+ETL+RN KVVSKD LM QLYP Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 DAE RESHTIDVLMGRLRKKI +Y +VI TVRGQGY F+++ Sbjct: 181 DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFDMK 223 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--ED 58 MR+L+VED L + +++ G+ +D ++ E + D I+D +P D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL ++++ R + +S P +VLTA K+ L AGADDY+ KPF I+E++AR++A++RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 ++ + +D + R + +++ I LTA EY +++ L++++G+ +SK+ +M + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +T++ + LRKKI +Y + I TVRG GY E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 143/221 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +L+ + DA + +D A D +E + E+ D AI+D+GLP DG+ Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +LI R R + PIL+LTAR++WQDKVE L AGADDY+TKPFH EE++AR++AL+RR + Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S VI P+ ++ S E+ D+ + L+ EY + E + + G+V SK L+ +Y Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +S+ I+V + RLRKK+ +I T+RGQGY + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLK 221 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L ++ ++ G+ VD +D A + LN ++ I+DLGLP DGL Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++R R+ +P+LVLTAR++ D++ L AGADDY+ KPF + E+ AR++AL+RR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D +++S I L E+ ++ L+ G+V+++D L LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ES+ ++V + LRKK + E+I TVRG GYL + Sbjct: 196 WDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 232 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LV+ED+ +L+ +AGH D A D + D+ +VD LP DGL Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ R+ + P+L+L+A D+V L AG DDY+TKP+ E++AR++ L RR+S Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 GLASQVI-SLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + I + ++D D I L E+ ++E L+R+ G+VV++ L+ ++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ IDV + RLR KI+ + ++ TVRG GY+ + Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLK 242 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 119/218 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LV ED L L+ + + GH V + + +A D ++D+ LP DG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R +PIL+LTAR++ D + L GADDYVTKPF E++AR++A+ RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + +D + E+ D I LT E+ +++ L++N G+ VS+ SL+ ++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E++T+D + LR+K+ Q ++I TVRG GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLV++D+ + L+ + G++V+ A D + E+ P++ I+D+ LP DG Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + +R+R D PIL+L+AR+ + KV+ L+ GADDY+ KPF +EE++AR+QAL+RR Sbjct: 64 ICQRFR-KDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR-I 121 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A++VI ++DL RE+ ++ LT+ E+ ++ + + +V++++ ++ +++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ ++V + LR+KI+ + +I TVRG GY+ + Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSR-IIHTVRGVGYVLK 220 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+A + + + VD + + D+ ++D+ LP DG+ Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ RR RS PIL+LTA+ +D V L AGADDY+ KPF E++AR+QAL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ ++ E++ +++ LT EY+++E +R+ +V S+ ++ Q++ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 ++ TI + LR+K++A Q +I TV G GY Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 87.1 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +++++D+ LK + G V + ++ L PD+ I+DL +P GL+L Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 IRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVM 109 + R +D S+PIL L+ + + ++L GAD Y+ K +EE++ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+A+++ + ++ G+ V AE+ +A LN+ PD+ ++D+ LP+ DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 LIRRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR-- 117 + ++ R ++P+++L+AR+ D+V L GADDY+TKPF E++AR++A +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 118 -RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 RNS ++ ++ ++I E + LT E+ ++ ++ +V S++ L+ Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ ++ T+DV + LR K+++ P +I +VRG GY + Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP--IIESVRGVGYRLAV 226 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 124/219 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++EDN L L+ ++ GH+VD A D + + D I+D+ LP+ DG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R +P+++LTA++S +D+V L GADDY+TKPF +E+MAR+ ALMRR+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ P +D RE + D + L E+ I+E L+R +V S+D ++ Q++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 S+ +DV + LR K++ ++ TVRG GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYK 219 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 135/235 (57%), Gaps = 14/235 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVV+D A +R L ++ +G++V+ A D + A E D+ ++D+ LP+ DGL Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 SLIRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 + R+ ++ +PI++LTA+ D+V L GADDYV KPF + E++AR++A++RR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 NSGLA---------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 ++ + + +++ ++D S + ++D+ I LT EY +++ L+ N G+ Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLFELR 223 S+D L+ +++ ++ T+DV + LR K+ + I TVRG GY F R Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARR 233 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 138/220 (62%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED + ++ + + + EA L E D ++DLGLPD DGL Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+R WR++ + P+LVL+AR++ D+V L+ GADDY+ KPF ++EV+AR+++L+RR++ Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ + V++ P ++DL R ++ ++LT+ EY ++E ++N +V+++ + +++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + E++ IDV + RLR+K++A +I T+RG GY Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ L + L + + + V+ A D A + + D+ ++D+ LP DG+ Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R+ RSN++ +PIL++T R S +K L AGADDY+ KPF IEE++AR++AL+RR + Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ ++D S E ++ LT E+ ++E +RN+ +V S ++ L+ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + + + + LR+K++A P +++ TV G GY + Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLK 222 Score = 94.8 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D+ ++ L+ + G + E+ + L PD+ I+D+ LP +G+ Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L R R++ LPIL LT + +V S GADD+V+KP E++ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L H L ++ G+ VD A D ++ + + D+ I+DL LP DGL Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R R+N L IL+LTAR+ +++V L GADDY+ KPFH E++AR++AL+RR+ Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ ++D + + + +N++ + LT E+ I+ L+R+ G+V++++ L+ ++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 ++T+ V + LR+K+ P I TV G GY Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV+ED + +++++ G+ + A D E PD+ I+DL LP DGL + Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R + PI++LTA++ QDKVE L +GADDY+ KPF IEE++AR++A +RR + Sbjct: 67 ARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 + + + ++L RE+ ++L+A E+ ++E L RN GKV S+ + +++P Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP-E 184 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 S+ +DV +G LR+K++ + +I TVRG GY+ Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D+ L L ++ + VD A D + Y+ + I+D+ LP +G+ Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L R+ RS++ +P+L+LTAR+S +DKV L AGADDY+ KP EE++ARM+AL+RR + Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 VI ++ ++ E+S V+ LT EY +ME IR+ +V S DS++ L+ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLFE 221 E +T+ + LR K+ A ++I V G GY + Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 91.8 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 8 DNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWR 67 D+ + L+ + G +V ++ L PD+ I+D+ +P +G+ L + R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 SNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + LPILVLT + + E+ AGADD+++KP E++AR+ + + R+ Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 Score = 47.1 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--EDGL 60 +L+V+ + +L + + G + A A + E+ P I +++L P EDGL Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP 102 L+ + +P+++ + R S+ D++ V G+ ++ KP Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+V+D+ L L Q+ + VD D + Y + D+ ++D LP G+ Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L +R R +PIL+LT + ++K+E L AGADDYV KPF ++E++AR++ L+RR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ Q+D ++ + +++ LTA EY+++E +R+ +V S L+ +L+ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 E T+ + RLR+K+ ++I TV G GY + Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 86.0 bits (213), Expect = 8e-16, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 10/128 (7%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++++V+D+A + + ++ + + N+ +PD+ + D+ +P +G Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKP-----FHIEEVMARMQ- 113 L R RS+ LPI+ L+ + + + GADDY+TKP F ++ R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -ALMRRNS 120 A +RR + Sbjct: 629 TADIRRPA 636 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D+A L L Q+ + VD A D + A+ +N D I+D+GLPD +G+ Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL +R R ++ PIL+LTA ++ + KV+ L+AGADDYV KPF EE+ AR++AL RR++ Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ +VD + E+ D +++T EYT++E +R+ +V S D+++ L+ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + + + LR+K++A P++ I TV G GY + Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248 Score = 90.2 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 2/128 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V+ ++D+ + L+ + G Q E+A L PD+ ++D+ +P+ +GL Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + R R+++ LPIL L+ + + + + GADD+++K E+ R+ ++R Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 SGLASQVI 127 ++ Sbjct: 633 GRAVPALL 640 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ LR L +++ + VD A D E E+ D+ ++D+ LP G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R S P+L+LTAR++ QD+V+ L+ GADDY+TKPF IEE++AR++AL+RR + Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+++ +D + R++ E + +TA EYT++E L + G+VVS+ +L L+ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + S+ +DV + LRKK+ E+ITT RG GY E Sbjct: 191 EDDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 116/219 (52%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED + L + + GH VD D + A ++ D ++D+ LP DG Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R V P+L+LTAR + D++ L GADDY+TKPF+++E+ AR++AL RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + ++D S + D I+L+ E+T++E LIR G V ++ L+ + + Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 A S+ +DV + LR KI + + T+RG GY Sbjct: 204 AYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVV+D+ +R L+ + G+ V+ A D EA + PD ++D+ +P DGL Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ RS LPILVLTAR+S ++V L AGADDY+ KPF +EE++ARM+AL+RR Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 122 LASQ-----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + ++ +D RE++ I LT E+ ++E LI N +V+++ ++ Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ + ++V +G LR+K +A+ +I TVRG GY+ Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +RVL+ +D +R LK ++ + VD A D +EA + ++ I+DL +P DG+ Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 + RR R N+ ++PIL+LTA++ DK+ LS GADDY+TKPF + EV+AR++ALMRR Sbjct: 64 EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 + +++ +D+S+ +++ D+ I LT E +++ N +V +K Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 L ++ + + +T+ V + +LRKKI+A + I TV G GY F Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 302 bits (775), Expect = 5e-81, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED+ + + + ++ + V D E + D+ I+D+ LP DGL Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + + R+ ++ PIL+LTA++S D+V L GADDY+TKPF + E+ AR++A +RR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ++ A + +D ++R L+I D+ I LTA E+ ++ + + G+V S++ L Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 + ++ HT++ + RLR K++ + + TV G GY F Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L + ++ G+ +D D + L D+ I+DLGLP DGL Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+RR R+ SLP+L+LTAR++ D++ L AGADDY+ KPF + E+ AR++AL+RR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A +I +D + +++ N + LT EY ++ L+ GKV +++ L LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E ES+T++V + LRKK+ +I TVRG GYL E++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKL----FNGLIRTVRGIGYLVEVK 219 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED A +R + ++ G Q +AED A LNE PD+ ++D LP G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 I+ + +P+++LTAR +D+V L GADDY+TKPF +E++AR++A+MRR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 SGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S +A +VI + +D + + +E +++ E+ ++ + + +V S++ L+ + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + E T+DV + RLRK ++ ++ TVRG GY F R Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED + ++ + +AG+ V A D + E+ + I+D+ LP +G+ Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R ++ PIL+LTA S ++ V L +GADDY+ KPF E++AR+++L+RRN+ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 -----------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 V+ + ++DL+ + S + I LTA EY ++E ++RN +V+ Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ ++ ++ + +DV + LRKK+ + +I TV G GY+ + Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLK 232 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 120/220 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+ L L ++ +QVD D Y + D A++D+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+ + R +LPIL+LTAR +DKVE L AGADDY+TKPF E++AR+++L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +S +DL EL + I+L+ E+ IM L+ +V SKDSL+ +++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + LRKK+ I T+RGQGY Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 13/232 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D + L ++ AG++V A D +A ++DL LP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R V PI+++TA+ DKV L GADDY+TKPF EV+AR++A++RR + Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 ------------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 V+ + Q+D ++ ++ N + I LT E+ ++ + G+V+ Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLF 220 S+D+++ ++ E+ +D+ + LR+KI+A Q +I TVRG GY F Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 126/220 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L LK ++ D + D ++ Y L + D I+D+ LP DG+ Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ R +S P+L+LTAR D+V L +GADDY+ KPF +E+ AR+ AL+RRN Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S I + +D + + + +++I LTA EY I+E L N +VS + ++ ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 D + + S+ I V + LR+KI+ + +I T++G+GY Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 128/220 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L R L + + + VD A+D K + D+ ++D+ +P DG+ Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+ ++ RS + PI++LTA++S D++ L AGADDY+ KP ++E +MAR++AL+RR + Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S VI Q++LS E++ +E I LTA EY ++E + N ++ ++ ++ +L+ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E T+ + LR+K++ + I TV G GY Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRL 220 Score = 71.3 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD---EDG 59 +L+++D+ L ++++ Q ++ A D A + + P I I+DL D EDG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNF-DSASEDG 452 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP 102 +L+ + +LPI++ T RES D+++V GA ++ KP Sbjct: 453 FTLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 Score = 68.3 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 26 QVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLTARES 83 +V + + L + P++ ++DL +P +GL L + R + LPIL L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 WQDKVEVLSAGADDYVTK 101 + ++ +AGADDY++K Sbjct: 603 EEMIQQMFAAGADDYISK 620 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 133/223 (59%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+ + + L + + G++V+ A D EA PD+ ++D+ LP++DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R ++PI++LTA++ DKV L GADDY+TKPF +E++AR++A++RR Sbjct: 63 VCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 --LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 SQ I PPF++DL +R + + + + L+ E+ I++ L+ + G+V ++D ++ ++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + E +DV + LR+K++ + I TVR GY F+ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 118/220 (53%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED L + ++D G V+ A D + + E D ++DL LP G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R+ PIL+LTAR + + L+ GADDY+ KPF + ++AR+ AL+RR + Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +D +RR + I+LT E++++E L+RN G SK ++ ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 RE + ++V +G LR+KI + I TVRG GYL Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLM 220 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED +L+ + ++G VD A + + + E D+ I+D+ LP DG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++I+ RS P+L LTA + D+V GADDY+ KPF E++AR++ +R+++ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S+ + + +D+ R + I+LT E++++ L+R G+V+S+ ++ Q++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ +DV + RLR K+ + Q++I TVRG GY+ + Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 133/227 (58%), Gaps = 7/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D ++ LK + +VD A D +EA Y+ + DI ++D+ LP DGLS Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + ++ R ++PI++LTA+ DK+ L GADDY+TKPF+I EV ARM+A++RRNS Sbjct: 73 VCQQIREFS-NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 121 ----GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 S VI ++D R L I D+ I LTA E+ ++E L N GKV S+D+L+ Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFEL 222 ++ ++ T+DV M RLR+KI+ + + T G GY F + Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED + + +K +++ G +VD A D + + D+ I+DL LP +G Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R + ++PI++LTA DK++ GADDY+ KPF E+MAR++ ++R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 LASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + I + ++D ++E++ + I LTA EY ++E L + GKV+SK + + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ I+V M LRKKI + +++ T G GY Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D A +R L +Q +Q A + +EA + + ++D+ +P+ DGL+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 R R ++PI++LTAR D++ L GADDY+TKPF E++AR++A +RR+ Sbjct: 67 ACMRIREFS-NVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 L---ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S +++ ++D R + ++ + I LT E+ ++ ++NN KV S++ L+ Q+ Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+D + LR K+ I TV G GY FE Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFE 226 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LV+ED+ + L+++++ G V A D KE DI ++D+ LP G+ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + +R R +PI++LTA++ DKV GADDY+TKPF EE++AR++AL+RR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 LA--SQVISLPPFQVDLSRRELSIN--DEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + ++ S E+ + +I+L+ E+ +++ L+ N G V+S+D ++ + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ + + +D+ + LR KI Y ++ I TVRG G++F+ Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 137/225 (60%), Gaps = 5/225 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+V+D++ L HL+ ++ ++++ AE+ ++A + E D+ ++D+ LP DGL Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R ++ P+L+LTAR +D+V+ L GADDY+ KPF + E+MAR++AL+RR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +++ P ++ R +++++ I LT+ E++I+E L+ N G VS+ ++ ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 DAELRE--SHTIDVLMGRLRKKIQAQYP--QEVITTVRGQGYLFE 221 + S+ +DV + LRKKI +I T+RG G++ + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIID 229 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 128/241 (53%), Gaps = 21/241 (8%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED + + + G++V+ EA E+ D+ I+DL LP DGL Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 LIRRWRSNDV-SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR-RN 119 + R+ R N +P+++LTA+ +K+ L GADDYVTKPF E++AR++A +R R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 SGLASQ------------------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETL 161 L + V P + + I ++ ++LT E+ ++ + Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 IRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 + N+G+V++++ L+ +++ L ++ T+DV + LR+KI +A P +++ TVRG GY Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 221 E 221 + Sbjct: 243 K 243 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 131/219 (59%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ALL LK + +G VD D + A L ++DLGLP DGL Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R P+LVLTAR+ +DKV L GADDYV KPF ++EV AR++ALMRR Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ ++ L ++D + R ++ + + LT E+ ++ L++++G V+++ L QLY Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E S+ ++V + LR+K+ +VI TVRG GY+ Sbjct: 181 WDEGVGSNALEVHVHHLRRKLG----NDVIRTVRGVGYM 215 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D + ++ ++ AG+ V D + L PD+ ++DL LP DG+ Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R R ++PI++LTA + DK+ L GADDY+TKPF +E+++R+QA+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 S + V +RE+ I+ I+LT E+ ++ L ++ GKV+S+ L+ Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 ++ L ++ +DV + LR KI+ E I TVR GY Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+ +VED + L+++++ G + + E+ A + + D+ ++D+ LP DG++ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + +R R SLPI++LTA++ +DKV L GADDY+TKPF IEE+MAR++ +R++ Sbjct: 66 ICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 120 ---SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + + + + R E+ ++ E + LT EY+++E ++RN V+++D ++ Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 +++ +++ +DV + LR K+ ++ ++ I TVRG GY Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED++ + L Q G V + D + + D+ I+D+ LP +DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R + P+++L+A+ S +++V+ L +GADDY+ KPF E++AR Q LMRR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 GLASQVIS--LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + Q + P +DL + L + I + E+ +M+ L+ N V+SK +++ + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVL+ RLR K+ + +I T+RG GY+ + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ + L+ + +AG ++D A + + + D I+D+ LP DGL Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R+ + P+L+L+A+ S D+V L G DDY+TKPF + E++AR+ +L+RR+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 V + +DL R + DE +L E+ ++E L+RN G+VV++ ++ ++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ ++V + RLR+K++ ++ T R GY Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 V+V+ED + L+V + G +V A + + A + E D+ I+DL LPD DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + RR R+ LPI++LTAR Q++V+ L GADDY+ KPF +E++AR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + ++L RE++++ I+LT E+ ++E +R+ +V ++ +L+ +++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +S+ ++V + LR+KI + +++I TV G GY Sbjct: 198 FTYVGDSNIVEVHISNLREKIG-DHERKLIRTVYGVGYTL 236 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L+ +K + G VD ++ L D I+DL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R WR P+L+LTAR++ ++VE L GADDY+ KPF + EV AR++ALMRR + Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + +D +R ++ E + L E+ ++E L+RN G+V+S+ + +LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E S+ ++V + LR+K+ + + I TV G GY Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTL 216 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ + ++ ++ GHQ+ +D + + PD+ I+D LP DGL Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 +L ++ R+ + IL+L+A +++++ L GADDY+ KPFH EE++AR++AL RRN Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + ++ LS + ++ I+LTA E +I+E +R G + S++ ++ ++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ +DV M RLRKKI + Q +I T RG GY Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL++ED+ + + +K+ + D G D A D Y + D+ I+D+ LP DGL Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + +R R N + +PIL+LT+R DKV L+AGADDY+TKPF I E+ AR+ A +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 LASQ-------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 +D ++++ + I++TA E+ ++ ++N G+ S+ L Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 + ++ + HT++ + RLR KI+ + I TV G GY F Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D A +R L ++ AG+ V A + A + PD+ I+D+ LPD G + Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 +R R P++ L+AR+S +DK+ L+ G DDYVTKPF ++E++AR+ A++RR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 I + +D + E+ + +I L+ E+ ++ + N +V+SK ++ ++ Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 +S ++ + +R+K+ A + +I T RG GY+ R Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 130/221 (58%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL+VED+ + + +++ G +V AE + + D+ IVD LP+ DGL+ Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 LI R VS P+LVL+A + D+V L AG DDY+TKPF +EE+ AR++ALMRR + Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ + P +DL R ++ + E I L E+ ++E L+R +V+++ L+ ++ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + +++ +DV +G+LR+KI Q +I ++RG G++ + Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRV 256 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 12/230 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VV+D +R L + AG +V+ A EA + + PD+ ++D+ LPD DG ++ Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R ++ P+L LTAR+ QDKV L+ G DDYVTKPF +EEV+AR++A++RR Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 AS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +I + +++ ++S + I L+ EY ++ L+ N G+V+SK ++ ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 DAELRESHTIDVLMGRLRKKI----------QAQYPQEVITTVRGQGYLF 220 ++ ++ + LRKK+ + +I T RG GY+ Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 243 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED A+L + ++ +G+ VD A D KEA + D+ I+DL LP DG+ Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R + + IL+L+AR + DK+ L GA+DY+ KPF +E+ AR++ L+RR+ Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +IS +D S++ + ++ E+I +T EY I+E L+ + KV+S + L+ ++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 S+++ + LRKKI EVI T+RGQGY+ Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYII 221 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDED 58 MRVL+VED+ L ++ ++ GH +D D + A L+ DI I+DLGLP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL +++ R + P+++LTAR++ D+++ L AG+DDY+TKPF +EE+ ARM+A+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + A +IS +D + ++ + + ++ E+ +++ L+ N G+V+S++ L L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 Y E +S+ ++V + LRK+ A ++I T+RG GY+ E + Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGA----KLIRTIRGVGYMVEKK 230 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 132/218 (60%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L ++ G+ V+ A A +A L I I+DLGLPD DGL Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ N S+P L+LTAR+S DK+ L +GADDY+ KPF ++E++AR++ + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +I++ +DL+ +++ ++ +L+ E+ +++ L+ N G++ SK L +LY Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + S+ I+V + LRKK+ P++ I T+RG GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKL----PKDFIKTIRGVGY 214 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L L+ ++ AG VD A+D +EA + D ++DLGLP DG+ Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RRWR+ + +P+L+LTAR W +KV AGADDYVTKPF +EEV+ R++AL+RR + Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S + P ++D + S+ + LTA EY I+ L+ G+ VS+ ++ +Y Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 R+S+ IDVL+GRLR+K+ A +I TVRG GY E Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGAP----LIHTVRGLGYRLE 217 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 3/220 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D A +R+ K ++ AG++V A E + PD+ ++DL LP DG+ + Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R + IL+LTAR D+V L GADDY+TKPF E++AR++A++RR G Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 A--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S V+ ++D RE ++++LT E+ ++ L RN+ +V+S++ L+ +++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +DV + ++R+KI+A + +I T RG GY F Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 76/218 (34%), Positives = 125/218 (57%), Gaps = 1/218 (0%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 L+VED+ L L+ +++ G VD A D +EAD D+ ++D+ LP DGLSL+ Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP-FHIEEVMARMQALMRRNSGL 122 +RWR++ V+ +L+LTA+ DKV L GADDY++K +EE+ AR++AL+RR Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 V+ ++D + R + I LT EY ++E L + GKVV++ + LY + Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + S+ +DV + LR K+ ++ ++I T G+GY+ Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYML 219 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D A +R L++ ++ + +D+AE+ EA E D+ ++DL +P DG+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ R + PI++LTA+ ++V+ AG DDY+ KPF EV+ R++AL+RR S Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 LA--------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 + V+ +D ++ + + LT EY ++ L + KV ++ Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQ--EVITTVRGQGYLFEL 222 L+ +++ + T+D + RLR+K+ P+ + I TV G GY FE+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ + L Q G + A + + + D+ ++D+ LP +DG Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R + P+L+L+A+ S ++V+ L +GADDY+ KPF E++AR Q+L RR Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 GLASQ--VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +Q +S +DL + L N I+L E+ +++ ++ N V+SK +++ Q+ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVL+ RLR K+ + +I T+RG GY+ + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLK 223 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED +R K ++ ++V A + E H PD+ I+DL +P +DG Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L R ++PI++LTA+ +D++ L+ GADDY+TKPF E++ R+Q ++RR + Sbjct: 63 LCGEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 LA-------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 +A S+VI P ++ R + + + ++LT E+ ++ + ++ +V S+ L Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + ++ S+T+ VL+ RLR+K++ I TV G GY FE Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE 229 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH-IPDIAIVDLGLPDED- 58 M+VL++ED+ L ++ + +AG+ A DA D+ ++DL LP D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 G+++ RR R D ++PIL+LTA + + KVE L AGADDY+ KPFH+ E++AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 QALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 +AL+RR+ + V+++ +D S R + I+LTA E+ ++E L+RN G++VS Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L+ + S+ + + LR+K+ A +VI T RG GY+ E Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ +L + ++ +G+ VD + A L I+DL LPD DG+ Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+R+ R +LP+L+LTAR++ D+V L AG+DDY+ KPF ++E+ AR++AL+RR+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A V+ Q+ ++++ E +KLT EY +++ LI +G+V+SKD L LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E ES+ ++V + LRKK + ++I +RG GY+ Sbjct: 181 WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGYI 215 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+++D+ + ++ + G++V A KE + E PD+ I+D+ +PD DGL Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--N 119 + +R R D +PIL++T +S D+V L GADDY+ KPF EE++AR++AL+RR + Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + VDLS R+ I+ + E+ ++ +++ +V++++ LM +++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ES+ ++V +G LR K++AQ +I TVRG GY+ Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 124/220 (56%), Gaps = 1/220 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +L+VED + ++ + + G++V E + Y + D+ ++D+ LPD GL Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R + LPIL+LTA ++ +D+V L AGADDY+ KPF +E++AR++AL+RR Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 LASQ-VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + P +D + R + + E + LT E+ ++ L+ +G+ +S+D++ +++ Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R ++ IDV + +R+K+ + I TVRG GY + Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRY 225 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED+A +R L + AG+ V A D + A + PD+ ++D+ LPD DG L Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R+ V P+L LTAR +D++ LS+G DDYVTKPFH++EV+ R++A++RR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 AS-----QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 AS + +D S E+ ++L+ E+ ++ + + +V+ K ++ + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ ++ +D + LR+K+ ++ TVRG GY L Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRL 237 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLVV+D+ + L ++ G+ V A D EA + PDI ++D+ LP DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R +PI++LTAR+ D++ L GADDYV KPF +EV+ARM+A+ RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 121 GLA-----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 + +++ + +D + R L+I ++LT EY ++E + + G+V S+ L+ Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 ++ A T+D + LRKK+ A I T+ G GY Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 124/220 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VED+ L L + + G+Q D D Y D+ I+D+ LP DG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ + R +S+P+L+LTAR++ DK+ L +GADDY+TKPF E++A ++AL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + ++ ++L +L+ + I L+ E+++ + L+ N G+VVSKD L+ +++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E + ++ + LRKK++ I T+R GY F Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 126/230 (54%), Gaps = 12/230 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VV+D +R L + AG +V+ A EA + P++ ++D+ LPD DG ++ Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R N + +P+L LTAR+ QDK+ L+ G DDYVTKPF +EEV+AR++A++RR Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 ASQ--VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +I + +++ +++ I+L+ EY ++ L+ N G+V+SK ++ ++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQE----------VITTVRGQGYLF 220 ++ ++ + LRKKI + +I T RG GY+ Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 121/221 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVEDN L + + + VD A+D + + D+ ++D+ LP D + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL RR R + PI++L+A + QD V L AGADDY+ KP +E + AR++AL+RRN Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ + ++D S E++ + ++L+ EY ++ L+ + ++ S+D ++ +L+ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + T+ + LR+K++ ++I TV G GY + Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLK 221 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGL 60 RVL+VED+ +R ++ + G + + D + A L+ D+ ++D+ LP DG+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 SLIRRWRSNDV---SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 S+ R R + ++P+++LTAR+ V L GADDY+TKPF ++ +R++A +R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RN-----SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 R + + + P ++DL RR ++ E ++LTA E+ ++ L N G+V S++ Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 +M L+ E + DV + LR+KI+ I TVRG GY F Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 120/221 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR LV+E++A H +K + + G+ VD D ++ Y+ D+ +V+ LP +G+ Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L +R R S+PIL+LT + S D V L AG DD++ KPF E+ AR++AL+R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D RE++ + L+ EY+++E +RN +V+++ +++ L+ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 HT+ + RLR+K++ ++I TV G GY + Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRLK 221 Score = 99.5 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 14/159 (8%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L V+D+ + + L + G +V +D + L + P++ I+DL +P +G+ L Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589 Query: 63 IRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM-----QAL 115 + R++ +LPIL L+AR+ Q ++ AGADDY++KPF E++ R+ + Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRIFNRLDRIH 649 Query: 116 MRRNSGLASQVISLPPFQVDLSRRELSIN-DEVIKLTAF 153 + R+ + L RR + + + + L+ Sbjct: 650 LLRSLAETDPITGLAN------RRRSTHDLNRYLHLSQR 682 Score = 76.0 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 20/162 (12%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD-ED-G 59 RVLV++D+ L L+ + Q+D ++A L E PD+ ++DL PD +D G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L+ + LP+LV T R+ D+ V G + +++K ++V+ ++ +++ Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQST 523 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETL 161 ++Q+++ ++D+ + L ++E L Sbjct: 524 PTASTQILA--------------VDDDPVTLN----RLLELL 547 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED +R + ++ + V D ++A ++H D+ I+DL LP G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R N +PI++LTA+ +D++ L GADDY+ KPF E++AR++AL+RR Sbjct: 70 VCRAIRDNS-DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 LAS---QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + +V+ +D+S ++ + + + LTA E+ ++ TL R G+V S+ L+ ++ Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 TID + LR KI + + TV G GY FE Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++EDN + ++ G + + D E E D+ I+D+ LP DG+ Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ R ++PI++LTA+++ D+V GADDYVTKPF ++AR++A++RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 GLASQVISLPPF-----QVDLSRRELSINDEVIK-LTAFEYTIMETLIRNNGKVVSKDSL 174 VI ++ RE+ +N E ++ LT E+ ++ L++N +V S++ L Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + Q++ + T+DV + RLRKK+ A + + TV G GY F+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL-ASEDKPFLYTVWGVGYKFD 225 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED L L+ + ++V A D K A ++ + D+ ++D+ LPD +G+ Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R++ +PIL+LTA + ++ V L++GADDY+ KPF E+ AR+ AL RR Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 GLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 VI++ +++ + + + E I LTA E+ ++ L +N G++VS+D ++ + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ +DV + LRKK+ + ++I T++G GY+ + Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIK 223 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEAD-----YYLNEHIPD-----IAIVDL 52 +LV+ED L+R + + +Q+ G+ A D EA Y L E P+ + I+D+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 LP +GL L R R ++PIL+++A+ S D+V L GADDY+ KPF + E++AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 QALMRRNSGLA---SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 +AL+RR V+ + ++ E + L+ EY ++E +R+ +V Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 ++ L+ Q++ + +S T+DV + LR+KI+ + I TVRG GY F Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 143/220 (65%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L + ++ AG+ VD + D ++ + + + D AI+DLGLP DGL Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++RRWR ++P+L+LTAR SW++KV L GADDY+TKPF IEE++AR++AL+RR S Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ IS+ ++D S + +S + + LTA EY + L+ + KVVSK L +Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + R+S+ I+VL+ RLRKKI A + I T RGQGY Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGA----DAIRTRRGQGYQL 216 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL+V+D + L + G + D + A D ++D+ LP DG+ Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + +R RS PI++++A+ DKV L GADDYVTKPF E++AR++A++RR Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 120 ------SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 ++ ++ R E+ + E++ LT EY ++ L+++ ++++ Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 L+ +++ +E+ +DV +G+LR+KI+ + I T+RG GY F+ Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFK 239 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDN L L +Q G+ VD D ++A Y D+ I+DLGLP GL Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ +WR+ ++ P+L+LTAR SW +++E L AGADDY++KPFH EE+ R+QAL+RR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 GLA + +D SR+ +S + I+LTA E+ ++ + + +++SK L LY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ ++V + LR+K+ + VI T RGQGY++ Sbjct: 181 DGETERDSNVLEVHVNHLRRKLG----RSVIETRRGQGYIY 217 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED + ++ + GH++ A D + + +H D+ I+DL +P +G+ Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R+ V+ PIL+LTA + ++ V L +GADDY+TKPF + E+ AR++ L+RR Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 GLASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + V++L +D + + + I+LTA E+ ++E L+ N +V+++ ++ Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ +DV + LRKKI + ++I TV G GY+ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVI 224 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+ + L + + G+ V+ A+D A + + D+ I+D+ LPD DG Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 L + R + P+L+L+A DK++ L GADDY+TKP H E+++R+ AL RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V+ +V+L + + I L+A E+ + L+ N KV+++ ++ + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ +DV + LR KI +P ++I TV+G GY+ Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMI 222 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +LVV+D L L++ ++ G QV A D +EA D+ ++DL LP DGL+ Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R+ + PI++LTA+ DK+ L GADDY+TKPF+ E++AR++A++RR Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 122 LASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + Q + + + +R + ++LTA EY ++E L R+ G V ++ L+ Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLFE 221 ++ + T+DV + R+R+K++ + + T G GY E Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLE 226 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ + + L + +AG+ + A+ ++A L+ + DI ++D+ LP DG+ Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L + R PILVL+A S DK+++L GADDY++KPFH EE+++R++AL RRN Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 121 ---GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Q +S +D +++ ND+ I+ + EY + L+ N KV+S+ ++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ ++ +DV + +R KI Q++I TV+G GYL + Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDE-TEQKIIHTVKGTGYLIK 223 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 135/221 (61%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ + ++ +++AG VD + +E + + AI+D+ LP+ DGL Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+I R+ P+L+L+A++S D+++ L G DDY+ KPF E++ R+QAL+RR+ Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + Q +S+ P ++DL R+++ + I+L A EY ++ + N G +SK S++ ++Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ +DVL+ RLR KI + Q++I T+RG GY+ Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 119/218 (54%), Gaps = 8/218 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED L L++++ + VD D ++ H D+ I+DL LP +GL + Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R+ R S PI+++TA+ DKV L GADDY+ KPF IEE++AR++A++RR Sbjct: 64 CRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 +I + + ++++N I+LT EY ++ L N V+ ++ ++ ++ Sbjct: 121 QKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 175 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E++ +DV + LR K++ ++I TVRG GY+ Sbjct: 176 SEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 131/219 (59%), Gaps = 2/219 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 + L+VED+ LL L+ + G +VD A+D +A + DI I+D+ +P DG+ Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R +PI++LTA+ +DK+E L AGADDY+TKPF +E++ R++ ++RR + Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + + I L +DL ++ + I LT E+ +++ L +N K + ++ L+ +++ Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 A +S+ +DV + +R K++ + P ++I T+RG+GY+ Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDK-PPKLILTIRGRGYML 220 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +++VVED+ LR L+++++ G+ V E +A P++ I+D+ LPD DG Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R + IL+LTA +DK+ AGADDY+TKPF EE++AR++AL+RR + Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 SQ I ++ ++R + N + + L+ E+ ++ L +N +VVSK+ ++ ++ Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +T++V + +RKK+ E+I T+RG GY Sbjct: 186 DYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED + +L ++++G+Q + + L D+ I+D+ LPD +G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R +P++ LTA++ D+V+ L GADDY+ KPF E++AR+++L+RR Sbjct: 61 SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 L +S+ ++DL ++ N +I+L+ E+ ++ L+ N ++V++ + +++ Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ IDV + RLR KI Y ++I T+RG GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKISV 221 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVV+D +R L + ++ G+QV A ++A + H PD+ ++D+ LPD G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R ++P+L LT D+V L G DD+VTKPF ++EV AR++AL+RR+ G Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 LAS----QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + Q+D ++ D + LT E+ ++ L+ N G+V+S+ + + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ + S +D + LR+K+ Q +I TVRG GY Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPG-QSLIRTVRGVGYQL 248 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D + + + ++ G +V+ + A + PD+ ++D+ L D DG + Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R +P L LTAR++ QDKV L+ G DDYVTKPF + E++AR++A++RR Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 LA-----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + ++D RE+ +++LTA EY +++ L+ N V+++ L+ Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ E ++ + LR+K+ P +I TVRG GY+ L Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNVEPP-LIHTVRGVGYVLRL 304 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVVED A +R + + ++ AG++V +AE ++A L E +PD+ ++DL LP DGL Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R I++LTA+ DK+ L GADDY+ KPF+ E++AR++A++RR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 LASQV--ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + +D + +L N++ ++LT EY++++ + N GK + ++ ++ ++ Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + ++ T+DV + RLR+KI+ I T+ G GY ++ Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQ 229 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--------HIPDIAIVDL 52 M +LVVED+ + L+ ++ G++V A D + + ++DL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 LP G+ + + R++ V P+L+LTA + D+V L GADDY+ KPF EE++AR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 QALMRRNSGLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 +AL+RR+ + + ++D + +S + E + LTA E ++E + + G+V+ Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S++ ++ ++ E ++ +DV + RLR KI ITTVRG GY E Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 131/225 (58%), Gaps = 8/225 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED + ++ ++ G A DA EA D+ I+DLGLP +DGL Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ + R SLPI++LTAR+ +DK+ GADDY+TKPF EE++ R++A +R N G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 LA----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + V+ +DL R++ + D ++L+A E+T+ ET R+ G+V+S++ L+ + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ S+ +DV +G LRKK+ E+I TVRG GY +L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLG----NELIETVRGMGYRLKL 223 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 134/221 (60%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + G+ VD D ++A Y D+ ++DLGLP GL Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++WR ++ P+L+LTAR SW +++E L AGADDY+TKPFH EE+ R+QAL+RR+ Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 GLA + +D R+ +S + I+LT+ E+ ++ + + G+++SK L LY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ I+V + LR+K+ + V+ T RGQGYL+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKLG----RAVVETRRGQGYLY 217 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+V+D +R LK+ ++ ++ +A + +EA E+ ++DL LP+ DG+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + R + PI++LTA+ ++VE +GADDY+ KPF EV+ R++AL+RR Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 123 --------ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 A VI ++D + +++ + LT EY ++ L + KV ++ L Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQ--AQYPQEVITTVRGQGYLFELR 223 + +++ + T+D + RLR+K+ + +I TV G GY FE++ Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVK 234 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVV+D + +KV ++ G V+ A++ + A + PD I+D+ +P DG + Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+ + R P L LTA++ +D++ L+ GADDYVTKPF +EEV+ R++ ++RR + Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 LASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S+ +I+ +D E++ EV+ L+ E+ ++ L+ N V+SK ++ + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + + ++ + LR+KI + P+ +I TVRG GY+ Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKIDTKEPR-LIHTVRGVGYVL 251 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL++ED+ + H+ +++AGH V+ A D +E D+ ++D LP DGL Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ + P+L+L+A +++ L AG DDY+ KPF + E++AR++AL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +A + + +DL R ++ I LT E+ I+E L+R+ G+VV++ L+ ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 +++ ID + RLR+K+ + +I TVRG GY+ Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYV 220 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 128/222 (57%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED +L+ + + G+Q D + ++ ++ D+ I+D+ LP DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +I R + P+L LTA+++ +DKV+ L GADDY+ KPF E++AR++ L+RR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A+ V ++ VD+ RR + + + I LT EY ++E L++ G+V+ + + ++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 +++ IDV + RLR KI + ++I TVRG GY+ E+R Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIR 224 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 1/220 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+ ED + ++ +++ GH V D L E D+ I+D+ +P +GL Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 LIRRWRSN-DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L +R P+++LTA + +D V+ L AGADDY+ KPF +E+ AR++AL+RRN Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D + R D I LT EY ++E + + G +S+ +L+ ++ Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ +DV + LR KI + +++I TV G GY+ Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIM 243 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 74/218 (33%), Positives = 125/218 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV ED + + L + +AG+ VD A+D EA + H D I D+ +P DG+ Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIR+ R N P ++LTAR +D+V+ L AGADDY+ KPF + E++AR++A++RR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++S+ ++DL I LT E++++E L+ + + VSK ++ +++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + ++ + V + LR+KI + +I T RG GY Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGY 218 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 123/218 (56%), Gaps = 1/218 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED L +L++++++ G D D D+ ++D+ LP+ G+ L Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R +PI+++TAR D V L +GA+DY+ KPF IEE+ AR++ L+R+ Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 A+Q I + ++ + R + +++E I LT E+ ++ +++N + VS++ ++ ++ Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ +DV + LR KI++ ++I TVRG GY Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D L L + G+ VD + K D+ I+D LP++ GL Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R ++P+L LTA+++ D+V+ L AG DDY+ KPF + E++AR++AL+RR+S Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 GLASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + + +++ ++D+ + +I+L+ E +++ + N ++++ +M Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 L+ + ES+ I L+ LR+KI+ +I TV G+GY F Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + +++A + VD +A L+ DI ++DLGLPD DGL Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R + +LP+L+LTAR+ DK+ L AGADDY+ KPF I+E++AR++ L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +I++ +D + L+I++E I L E +++ L+ N G+V+SK+ L +LY Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E S+TI+V + LRKK+ P I T+RG GY Sbjct: 181 WGEEVASNTIEVHVSHLRKKM----PDNFIKTIRGVGYCI 216 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++EDN + + + +AG+ +D D ++ Y + + I+D+ LP DG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ P++ LTAR+S D+V L +GA+DY+ KPF E++AR++A +R++ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 L S + + ++D +S ++ I LT E+ ++ L G+++ + + +++ Sbjct: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++T+DV + RLR K+ +P+++I T+RG GY F Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI-PDIAIVDLGLPDEDG 59 +R+L+V+D L L++++ G++V+ A D PD+ ++D LPD G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + + +R RS+ V+ PIL+LT + D+V+ L AG DDY+ KPF IEE+MAR++A+ RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 SGLA---------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVS 170 G S +S+ ++ R++ + + I+L+ EY ++ L+R NGKV+ Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 KDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +M ++ + + + +DV + LR+K++ + +I TVRG G++ Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFIL 241 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + L + D + VD A ++ D+ I+D+ LP+ DG+ Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ + +LP+L +TA + +K+ L+AGADDY+TKPF +EE++AR++AL+RR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 -GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + +++++ REL+ + + LT E+ ++E +RN + S+++++ L+ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 ++ T+ M LR+K++ P ++I TV G GY + Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223 Score = 74.4 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L V+D++ L LK ++ +Q+ + E L + PD+ ++D+ +P G+ Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + R + LPI+ TA + AG D+ + K +++A ++ M+R+ Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 LVVED++ + +++ ++ VD A D ++ ++ I+DL LP DG + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 RR R + S PI++LTA+ DKV L GADDY+TKPF E +AR+ AL+RR + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 -GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + + I + + LT E+ ++ L RN G+ + ++ L+ Q++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLFELR 223 + TID + RLR+KI P + TV G GY E++ Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 1/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D+ L +Q+ G+ V+ A A + N + + I+D LP + G+ Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAH-NCYAFSLLILDWMLPGKSGV 59 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 R R V PIL+LTAR++ D++ L GADDY+TKPF EE++A ++AL+RR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 I+L +D R ++ + LT EY I+ L+ + G++VS+ L ++ Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + IDV M LR+K+ +I TVRGQG+ Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRI 219 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D + +++ ++ G V A +EA PD+ I+D+ LPD DG Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR R++ + ++ LTAR++ +DK+ L+ G DDY+TKPF +EE++AR++A++RR Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 LASQ------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 A + +++ ++D + D+ ++L+ E++++ + N +V+S+ ++ Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ E +D + LR+K+ P +I T RG GY Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPP-LIHTQRGFGYAL 245 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +K + G VD + + L D I+DL LP DG Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R WR P+L+LTAR++ ++VE L GADDY+ KPF + EV AR++AL+RR S Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + ++ ++ E + L E+ ++E L+RN G+V+ + + +LY Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + S+ ++V + LR+K+ + E I TV G GY Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS----EFIRTVHGIGYTL 216 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L V+D+ + L+ + G +V A +EA + PD+ I+DL +P DG Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ ++ +PI++L+AR D+V G DDY TKPF E+ R++A++RR Sbjct: 64 TYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 122 LA---SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 ++ +D ++R +++N+ ++LT ++ ++ + N +V +K L+ ++ Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + + + +T+ V + RLR+K++ E I TV G GY FE Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 124/233 (53%), Gaps = 13/233 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D+A + + + + D +EA E+ P++ ++DL LP DG Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R R ++PI++L+A+ DKV L GADDY+ KPF +E++AR++A++RR Sbjct: 66 VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 119 NSGLASQVI--------SLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVS 170 + + QVI S P ++ S ++ + I++ E + L + +V + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 171 KDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++ L+ ++ + ++ T+DV + RLR+KI+ + +TV G GY FE++ Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVK 236 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 123/218 (56%), Gaps = 3/218 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED L ++++++ + VD D K + D+ ++DL LP+ +GL Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ R N + PI+++TA+ DKV L GADDY+ KPF IEE++AR++A++RR Sbjct: 63 ICRQIRQNQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--Q 119 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 +I + +D +++++ + + LT EY ++ L+ N V+ ++ ++ ++ Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E++ +DV + LR K++ + I TVRG GY+ Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYV 217 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L++ED+ + LK +++ G+ A D H + I D+ LP DG L Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + R + +P+L+LTA S DK++ AGADDY+ KPF E+ AR++ L++R + Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 123 -----ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 A + ++ Q+D +RRE+ +I+L+ EY ++ +++N +V+S+ + + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ IDV + LRKKI + ++I T G G++ Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFIL 226 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ L+V +++AG VD A D + A+ L + I+DLGLP G+ Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ R +P+LVLTA+++ DKV L AGADDY+ KPF + E+++R +AL+RR+ Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S++I VD + +S + + LTA E+ ++ L+ + G + + LY Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ES+ I+V + LRKK+ +VI TVRG GY+ + Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGG----DVIRTVRGFGYVVD 226 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL +ED+ + + + +++ G VD + ++ D+ +D LP DGL+ Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ RS V P+L+L+A ++V L AG DDY+TKPF EE+ AR++ L+RR+ Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 LASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + +++ P +DL R++ + I L EY ++E ++R+ G+ +++ L + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ IDV MGRLRKKI +I TVRG GY+ Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +LVV+D + ++V +++ G + + + ++A + ++AI+D+ LPD DG Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 +L +R R N + P+++LTA+E DK+ L+ GADDY+TKPF E++AR++A +RR Sbjct: 63 TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 119 -----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 +I+ +D+ E ++N++ I LT E++I+ L N G+VVS + Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 174 LMLQLYPDAELRES-HTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLFE 221 L +++ D S +T+ V + LR+K+ + + I TV G GY E Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 124/221 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+++D+ L L+ + +AGH V+ A D +Y+ D+ I+D+GLPD++G+ Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R++ + +L+LTAR+S KV+ L AGADDY+ KPF +E+ AR++AL RR Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ D + IKLTA EY I+E I N G ++++ L L+ Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+TID L+ +LR+K+ I T+RG GY + Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRLD 221 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 13/232 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVV+D + L+ ++ A V +A + +A + + DI ++DL LP+ G Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +++R R + P++VLTA+++ DKV L GADDYV KPF EV+AR+ A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 LAS------------QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 + + PF +D + ++S+ND+ +KLT E+ +M+ L+ + +V+ Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQ-AQYPQEVITTVRGQGYLF 220 S+D L+ ++ +S +D+ + LR+KI+ + + T+RG GY F Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + L+ ++ G+ + A D KE E + ++D+ LP +GL Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R +PI++LTA + QD ++ L GADDYVTKPF +E++AR++A+ RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 G--LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + ++ P D S +S+++E I LT E I+E L+ N GK +S++ ++ + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQ-AQYPQEVITTVRGQGYLFEL 222 + ++ +DV +G+LRKK+ + +I T RG GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLNL 225 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ L+ ++ ++ AGH+ A D EAD H PD+ ++D LP DGL+L Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RWR + P+L+LTAR +V L+ GADDY+ KPF +E++AR+QAL+RR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 ASQVIS-LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + S VD + R++ ++ I L A E+ ++ L + G+V S+D L+ +++ Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLF 220 TIDV + +LR+K++ + + TV G GY F Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 70/217 (32%), Positives = 130/217 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+ LR + +++ VD D + A + D I+D+ +P DG+ Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R R+ +++PIL+LTAR++ ++++ L AGADDY+TKPFH E+ AR++AL+RR S Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +++ ++D ++ + ++ LTA E+T++ L R+ G++VS+ L ++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQG 217 + ++ IDV + RLR+K+ + ++ T RGQG Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQG 217 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLP-DEDGL 60 +LVVED + L+ + G++V A+ A + + PD+ I+D+ LP D DGL Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R+ +PIL+LTAR+ D+V L AGADDY+ KPF EE++AR++AL+RR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 ------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 V +D + R D I+LT EY ++ +R+ +V+++D + Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 M +++ ES+ ++V + LR+ ++A ++ TVRG GY L Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRL 233 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 134/219 (61%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL+VEDN L + +K + G+ V A DA++A + E D +VD+ LP +G Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R + +++PIL+LTA ++ DKV LS GADDY+TKPF E++AR+++L+RR++ Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + I+ +++ R++++ D V+K++ E+ ++E +RN G V S++ +M +++ + Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ +S+ IDV + LR K++ I TV G GY F Sbjct: 187 EKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRF 225 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D +R LK ++ ++ A D KEA +NE PD+ I+DL LP+ G Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R D PIL+LTA+ + +DKV + GADDY+ KPF + E++AR++A++RR++ Sbjct: 64 VCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 LASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 A + V ++ +R ++ +N LT E+ I+ TLIRN G+V +++ L + Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + TID + +RKK+ + Q +I TV G GY FE Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKLNLEKNQLII-TVYGVGYKFE 225 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+++L L + AG QV A D PD+ I+D+ LP DG S+ Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR----R 118 R + + ++PI++LTA ++ L GA DYV KPF + E++AR++A++R + Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +S V+ + P Q+D + R + D I+L+ E+ ++ L+ N G +S+D L+ ++ Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLFE 221 + L + TIDV + LR+K++ +I TVRG GY F+ Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQ 226 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED+ +R +++ + D GH+V +A D+ +VDL LPD DG Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 RR R +PI+++TAR D V L AGADDYVTKPF ++E+ AR++AL+RR+ Sbjct: 80 CCRRLR-RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G A +VI + ++ + N E + LT E+ ++ L +V S++ L+ ++ Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVI-TTVRGQGYLFE 221 + + +DV + RLR KI+ I TVRG GY + Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQ 242 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED L L ++ G + D A DI ++DL LP G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R+ S+P++++TAR+S DKV L GADDYVTKP+ E++AR++A++RR + Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 ASQ-----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 V+ P ++D+ R +S+N E I L E+ ++E L+RN+G+V+++ L+ + Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 ++ + ++ T+DV + RLR KI+ V + TVRG GY E Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 131/219 (59%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED++ + + + ++ G VD DAK+ + L + + D ++DL LP DG++ Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +++ WR+ + P+L++TAR++ ++V L+AGADDY+ KPF ++EV+AR+QALMRR+ G Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + +++S ++++LT E I+E ++ + ++ S+ SL +LY Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ES+ I+V + LRKK+ + I T RG GY Sbjct: 183 QQDIESNAIEVHIHHLRKKLG----NDFILTKRGIGYYL 217 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D +R + + +++A +AE+ +EA L + D+ ++D+ +P DG +L Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--NS 120 R R +PIL LTAR DKV+ L G DDY+ KPF E++AR++A+MRR ++ Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ +S P +D R+++++ + + LT E+ ++ L +++G+V S++ L+ Q++ Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + T+D + LR K++ + I TV G GY FE+ Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQAS--DFIQTVWGIGYKFEV 224 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 135/230 (58%), Gaps = 11/230 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL+V+D A +R L+ ++ G+ V A D +EA ++ +PD+ I+D+ +P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R D +PI++LTA D++ L GADDYV KPF +E+ AR++A++RR + Sbjct: 76 VCQEIR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134 Query: 122 LA-------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 A S +I+ +DL++R++ ++E I+LT E++++E LI +G+ S+ + Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 175 MLQLYPDAEL--RESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + +++ ++ +DV + RLR K++ ++I T RG GYLF+ Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 129/230 (56%), Gaps = 11/230 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +++VEDN L+ +++ +Q V A EA L +H+P + I+D+ L D +G L Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 63 IRRWRSNDVS--------LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQA 114 R R+ +PIL+L+AR +D++E AGADDY+TKPF E+ R+++ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 115 LMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ++RR+ GL+ I + Q+D RRE+ +N ++LT E+ ++ L + G+V S++ L Sbjct: 131 ILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREEL 190 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQY---PQEVITTVRGQGYLFE 221 + +++ + + + T+DV + RLR K++ +I+T G GY E Sbjct: 191 LERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLE 240 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 129/218 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LV+ED +LR L + + DAG+ VD A D +E + +E D+ I+D+ LP +G Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ R R+ +L+LTAR+ +D+V L +GADDY+ KPF +E++AR++AL+RR + Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++ + ++L +++S++ + L EY ++E L N +VVS+ + ++Y Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 D S+ +D + LRK I + I T RG GY Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGY 218 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 L+V+D+A +R ++ ++ AG V +A D A L +H D+ ++DL LP+ DG ++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR---NS 120 R + LP+++LTA +D++ L GADDY+ KPF E+++R++A++RR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +++ P VD+++R + D+V+ LT E+ ++ L + +V S++ L+ +++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 181 DAELRESHTIDVLMGRLRKK-IQAQYPQEVITTVRGQGYLFELR 223 +S T+DV + RLR+K + + P E + TV GQGY F ++ Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVK 225 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D+AL+ + +++AG VD A D A PD+ ++DL LP DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + RR R++ +P+++LTAR D++ L GADDYVTKPF E+ R+Q+++RR + Sbjct: 117 VFRRLRAHRP-VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 ---GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G + V+ VD + R + + + LT E+ ++ L+R G+ ++ L+ Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 ++ + + T+ V + RLR+KI+ ++ TV G GY ++ Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 279 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVEDNA L + ++D +VD A + ++ + ++I D ++D+ +P DG Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I++ R + P+L LTAR+S +D+V+ L G DDY+ KPF E+ AR++AL+RR+ Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Q I ++ +++ ++ + +KL+ +Y ++E L++N+GK++ ++ + +++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++V + LRKK++ Q+ I TVRG GY+ + Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILK 230 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+V+D +R+ L++ + G++V +AED ++ E D+ I+D+ LP +DG S Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R + P+++LTAR+ +D+V GADDY+TKPF+ + ++AR+++L+R+ + Sbjct: 68 ILREIKKY-TETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + +I + ++ + +S + I+L EY ++ LI+NN +S++ L+ +++ Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 L + TID + LRKKI + I T+RG GY +L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIG----KNAIKTIRGIGYKLDL 223 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED L + V + +V A +A+ L D+ ++D LPD DGL L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R++ +P+++LTAR+ D V L +GADDY+TKPF + E+ AR +AL+RR+ Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 AS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A Q+I ++DL RE+ D + LTA E+ ++ L R+ +V S+ L+ ++ Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 181 DAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGYLFEL 222 HT++ + RLR K+ +E++ TV G GY F L Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFTL 245 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+++L L ++ +G+ VD + EAD L+ D+ I+DLGLP GL Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R+ + +LP+L+LTA +S ++V+ L GADDY+ KPF + E+ AR++AL RR + Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+ D R ND V++L+A E ++E L++ G++VSK+ L+ L Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ++ I+V + RLRKKI+ + ITTVRG GY E Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSGVR--ITTVRGLGYCLE 263 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L L + G +V A D D ++D+ LPD DG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R R ++PI+++TAR+ D++ L GADDY+TKPF EE++ARM A+ RR + Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 121 G------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 I++ D L+ ++LT E ++ L+ + G V+S+ + Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + ++ ++V + RLR+K+ A P V+ VRG GY Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPP-VVENVRGFGYRL 225 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ ++ + ++D + VD + K A+ L D+ ++DLGLP +DGL Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R S P+L++TAR+ ++ L GADDY+ KPF + E+ ARM+A++RR+ Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDE--VIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G +S ++ +D + + I + I L+ E++++ LI G ++S+ L ++ Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 Y E ES+ ID L+ LRKKI +E I VRG G++ Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIG----KEQIKNVRGVGWMM 218 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+ ED+ L L ++Q+ G+ V+ +D A D+ ++D+ LP G Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R +++ +PIL+LTAR DKV L +GADDY+TKPF + E++AR++AL+RR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 LAS---QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S L VD R E++ + + L+A EY ++ LI + G+ V+++ L+ Q+ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 + + ++ T+DV + LR+K++ + TVRG GY Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_B9ZMZ7 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=B9ZMZ7_9GAMM Length = 238 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 103/219 (47%), Positives = 147/219 (67%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RV+V+ED+ LR + ++++ G +VD A D Y L E+ DIA+VDLGLP DGL Sbjct: 4 RVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMDGLD 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +IR+ R LPIL+LTAR+ WQDKVE L AGADDY+TKPFHI+E++AR++AL RR+ Sbjct: 64 VIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSLQ 123 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + + P +D + ++ +NDE + LT FEY ++ TL+R G+V+SK+ L LY Sbjct: 124 AGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLYEH 183 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E RES+ I+VL+GRLR+K+ +I T+RG+GY F Sbjct: 184 DEDRESNVIEVLIGRLRRKLDPGGSLGLIETLRGRGYRF 222 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V+VV+D + L+ ++ G+ V A D +A + E PDI ++D+ LP DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + R R +PI++LTA++S DKV L GADDYVTKPF E++AR++A +RR+ Sbjct: 64 VCREVRKK-YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 120 -----SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 +G + I++ + + E I+LT E+ + L ++ G+V++++ L Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + ++ + T+DV + RLR+KI+ E I T RG GY + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQ 230 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 130/221 (58%), Gaps = 3/221 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D +R L+V ++ A + V +A DA++A + + PD+ ++D LP G+ L Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 63 IRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 RR + ++V+ +PI++LTA+ +KV+ L GADDY+TKPF E++AR++A++RR Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + S+ I + +D ++I+D +++ EY ++E + + +V +++ L+ ++ Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E T+DV + RLRK + + I TVRG GY F Sbjct: 186 GGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 124/220 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L +ED LR + + GH VD+A A+E D I+D+ LP + GL Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+ WR V P+L+LTA +S +D+V L GADDY+ KPF I E+ AR++AL+RR Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G I + P ++D + R +S + LTA E+ +++ L R+ G++ S++ + +LY Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + S+ +D + LR+K+ ++I T RG GYL Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 2/219 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D+A L L + ++ G++ D A + PDI ++DL LP +GL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R+ ++PI++LTA+ D V+ L AGADDYVTKPF E++AR++A +RR Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ +S+ Q+D+ +++ + I LT E+ ++ L R +V +++ L+ Q++ Sbjct: 136 GQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVIT-TVRGQGYL 219 ++ ++V + RLR KI+ + I TVRG GY Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLV+ED L L + G+ + + D+ I+D+ LP +G Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ R R N V PI++LTAR + ++ V+ L GADDY+TKPF + E++AR+ A++RR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 -------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 + +VI++ + + E+ +N E + L E+ ++ L++ G V+++D L Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 M ++ + T+DV + LRKK++ I ++RG GY Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKL 228 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%) Query: 1 MR-VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG 59 M+ +LVV+D + L+ ++ +V A D +A + D I+DL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +++ ++ R + PI++LTA+++ DK+ L GADDYVTKPF E++AR++A+ RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 SG-------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 + AS+ I + VD + D + LT E+ ++ + KV S++ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 L+ ++ E+ +D+ + LR+KI+ + TVRG GY E Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL++ED + +++++ + A D + + D+ ++D+ LP DG++ Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ RS PI++LTAR+S D+V L +GADDY+ KPF IEE++AR++ + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 LAS---QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + +++ V + R ++ N++ ++LT EY ++ T ++N +V+ +D L+ + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + E++ +DV + LR KI I+TVRG GY+ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVM 249 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 130/224 (58%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED L L ++ G + D A + DI ++DL LP G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN--- 119 ++ R+ S+P++++TAR+S DKV L GADDYVTKP+ E++AR++A++RR Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S ++ V+ P ++D+ R +S+N + I L E+ ++E L+RN+G+V+++ L+ ++ Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 + + ++ T+DV + RLR KI+A V + TVRG GY E Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D+ + + + G+ V A DA+EA + D+ IVD+ LP DG Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 LIRRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L+R+ R + P++ L+A+ DKV L GADDY+TKPF I E++AR++A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 120 SGLASQV------ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 A + I ++D+ R E+ ++D+ + LT E+ ++ L N GKV S+D Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 L+ +L+ ++ T+DV + RLR KI+ + I TVRG+GY F Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LV+ED L L + + G++V + + D+ ++DL LP +G Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ + RS V P+++LTA+ + ++ V+ L +GADDY+TKPF + E++AR+ A++RR++G Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 ---------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 + I L + + E+++N E I L E+ ++ L R G V+++D Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 LM ++ + T+DV + LRKK++ I ++RG GY Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 1 MR--VLVVEDNALLRHHLKVQIQDAG-HQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDE 57 M+ ++++ED+ + ++ ++ G V + + EH P++ ++D+ LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGLSLIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 +G + RR R + + +PI++LTAR DK+ L GADDY+TKPF + E+MAR+ A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 MRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 +RR G S V +D + + + I LT E+ +++ L ++ G+V++++ L+ Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ E+ T+DV + R+R+K+ I T G GY F Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+ + L++ + DAGH VD D + D+ ++D+ LP DG Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + RR R PIL++TA+ DKV L GADDY+TKPF I EV+AR++AL RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ---NSGLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 G A I L V+ +R++++ E + LT+ E+ ++ R+ G+ S+D L Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFELR 223 + +++ SHT++ + RLR KI+ + TV G GY F R Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+A + + AGH VD E+ +EA + D+ + D +PD DGL Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S +R R ++ P+++LTA + +D+VE L AGADDY++KPF + E++AR+ AL RR Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 G---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G + +S ++DL + + + + L E+ ++E L+R+ G++ ++ L+ + Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ + ++ M RLR KI+ + E I T+RG GY+F Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMF 223 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+V+D + ++ + + G V + ++A L D+ I+D+GLP DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R+ R+ P+++LTAR D+V L GADDYV KPF E++AR++AL+RR + Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 LASQVISLPP-------FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 + + Q+D +RR + D + L E+ ++ L + G+V +++ L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 + Q++ E ++ T+DV + RLR K+ + +I T G GY F Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED+ +R L + AG+ V A+ + A + PD+ ++D+GLPD DG ++ Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR---- 118 R R+ V P+L LTAR +D++ LS+G DDYVTKPFH++EV+ R++A++RR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + G + ++D E+ I+L+ E+ ++ L+ +VV K ++ + Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ +D + LR+KI PQ +I TVRG GY Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDRFEPQ-LIQTVRGVGYCL 236 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 8/220 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED + +K +Q GHQ + D A + D+ I+D+ LP DG + Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 I P + L+A+ S D+++ S GADDY+TKPF + E++AR++A++RR Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 AS ++D S ++ N + ++ T EY ++E L+ N +S++ L+ ++ Sbjct: 120 AS-CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ T+DV + +LRKK++ ++ I TV GY E+ Sbjct: 179 FEGDTRTVDVHIQKLRKKLEW---EDRIKTVYKLGYRLEV 215 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L ++ ++ H V+ D + Y+ + D+ I+D + + GL Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 L R+++ PIL+LTAR++ D+V L+ GADDY+ KPF EE+ AR+ AL RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S Q +D E+ +++ LT E+ +++ +R+ KV+++D ++ + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + +D + LRKK+ + ++I VRG GY Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED + ++++++ G+ VD D + + D+ I+D+ LP +G+ Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++RR R +P+++LTA++ DKV L GA+DY+TKPF IEE++AR++ + + S Sbjct: 65 VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 LASQVIS---LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +V + Q+D+ R ++ + I LT E+ +++ L+ N +S+++++ ++ Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + L +++ +DV + LR KI ++ ++ I T+RG GY F Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L++ED L+ L ++ G+Q D A D D+ ++DL LP G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R +++L+A+ +DK+ L GADDY+TKPF ++E+ AR++A+ RR+ Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLT--AFEYTIMETLIRNNGKVVSKDSLMLQL 178 + + +++ LS + LT + E+ +ME L+RN +V+S+ + ++ Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + E + +DV + LRKK++ I VRG GY + Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQ 242 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++ VVED L L+ ++ G +VD EA+ L E +PD+ I+D LP G+ Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63 Query: 62 LIRRWRSN--DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L RR R LPI++LTAR ++V L+ GADDYV KPF E+MAR++A++RR Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123 Query: 120 SGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S ++ ++D + ++L E+ ++E L+ + G+V S+ L+ + Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+DV +GRLRK + +VI TVRG GY E Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 127/231 (54%), Gaps = 13/231 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN---EHIPDIAIVDLGLPDEDG 59 ++VVED L ++ +++ GH+V+ D A L + PD+ ++DL LP+ DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR- 118 L + RR R + + PIL+LTAR + D+V L GADDY+TKPF + E+ AR+ A++RR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 -------NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSK 171 + + I +D RE++ + + LTA E+ ++ L N G+V S+ Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 DSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 D L+ +++ + + T+D + RLRKK+ P E I T+ G GY +E Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 8/223 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+ EDN + LK ++ G AED +A D+ I+DLGLP +DGL+ Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR-RNS 120 ++R R LPI+VLTAR+ D V+ L GA+DY+TKPF EE++AR++ +R R Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 121 GLASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G + + +DL R+ + + V++L+A E+ + E L+R+ +V+SK+ L+ + Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ S+ I+V + LR+K + + I TVRG GY Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRL 221 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL++ED + +K +Q+ ++ + KEA + D I+DL LPD G Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + +R R +PIL+LTA+ D++ L GADDY+TKPF +E++AR++A+MRR + Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 121 -GLASQVISL--PPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 GL + +I L +VDL E DE+++LTA E+ ++ I+N+GKV S+D L+++ Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + TIDV + LR KI+ +Y + I TV G GY F Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYYK-YIVTVYGVGYRF 227 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ALL+ L +++ G+ D A AKEAD + + ++DLGLPDEDGL Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+ RWR N P+L+LTAR++ D+V L GADDY+ KPF + E AR++AL+RR+ Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + I + +DL+ +++ ++D+ I LT E+ I+ LI G V ++ L LY Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + S++++V + LR+KI + I T+RG GYL Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIG----KNRIKTLRGFGYLL 216 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ + ++ ++ D + E +PD+ ++DL LP DGL + Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 IRRWRSN-DVSLP-ILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR--- 117 R R P IL+LTA+ D++ LS GADDY+ KPF E++AR++AL+R Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 118 RNSGLASQVISLPPFQVDLSRRELSI----NDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 R Q+ FQVDL + + S E ++LT E+ ++ T + G+V ++ Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLFE 221 L+ +L+ + + +D + RLRKKI+ I TV G GY FE Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED+ + L +++ + VD A+D +EA L D+ ++DLGLP+ DG+ Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ RS + P+LVLTAR+ +D+V+ L AGADDY+TKPF + E++ARM+ L+RR+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + + + +D++ + L + I +TA EY ++ T + KV SK L +Y Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ES+ I+ L+ LRKKI Q+ I +RG G+ Sbjct: 181 WEAGIESNAIEFLIYGLRKKIG----QKRIKNIRGLGWYI 216 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+ ++ ++ G+QVD E A + +H D ++D GLP G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R ++P++ +TAR+S D+VE L GA+DY+ KPF +EE+ AR++A +R+ + Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +++ Q+D + + + I LTA E+ I+ L+ + ++++D L LY Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E ES+ I+V + +LRKKI + I T+RG GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS----IKTIRGLGYRM 216 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLP-DEDGL 60 R L++ED+AL ++ ++ G QV D + D+ I+D LP DGL Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ RS P+LVL+A + ++V L AG DDY+TKPF E+ AR++AL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 -GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 ++ + L +++L R + + L E+ ++ L+++ ++V++ L+ ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 +++ IDV + RLR K+ + +I TVRG GY R Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDR 254 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L++ED+ ++ LK + G+ V A D P + ++DL LP +G + Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R + +PI++LTA+ D V L GADDYVTKPF I+E++AR++A +RR Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 V + + D + R L N + + L+ E+ ++ L+ N G+ +S+D +M ++ Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVI-TTVRGQGYLFEL 222 +ID + LR KI+ + I TVR GY FEL Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFEL 227 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+++L L ++ G+ VD D AD L D+ I+DLGLP GL Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R+ + LP+L+LTA +S + +V+ L GADDY+ KPF + E+ AR++AL RR + Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S +I D + R +++D + L+A E +++E L+ +G++VSK L+ L Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ++ I+V + RLRKK++ + I TVRG GY E Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLEPSGVK--IITVRGLGYCLE 219 >UniRef50_A1SID6 Two component transcriptional regulator, winged helix family n=1 Tax=Nocardioides sp. JS614 RepID=A1SID6_NOCSJ Length = 228 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADY-YLNEHIPDIAIVDLGLPDEDG 59 MR+LV ED+ L L+ + +AG QV+ A D + A L++ D+A++D LP DG Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +++ RR R V+LPIL+LTAR +D+V L AGADDY+ KPF ++E++AR++AL RR Sbjct: 61 VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + + L VD R ++ I L+A E+ I+ L+ + G+VVS+ ++ +++ Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ IDV + +R KI + E ITT+RG GY + Sbjct: 181 DGETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGYRVD 222 >UniRef50_C8W872 Two component transcriptional regulator, winged helix family n=2 Tax=Atopobium RepID=C8W872_ATOPD Length = 224 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+ ED + + ++ + VD D A L ++ DIAI+D+ +P G Sbjct: 1 MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASALLALESNMYDIAILDVMMPKMSGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ RS +++PIL+LTA+ DKVE L GADDY+TKPF E++AR++AL RR+S Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSI--NDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V+ +D + L+ + + ++L+ E I+E +I N+G+++++D L +++ Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + E + ++V M RKK+ I VRG GY ELR Sbjct: 181 WGFESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGY--ELR 223 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L L ++ + VD D + Y I D+ ++D+ LP DGL Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R ++ P+++LTA+ DKV L +GADDY+ KPF EE++AR++A+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + Q++ S +LS + +KLT E ++ LI N SK+ ++ +++ Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E + ++V + LRKK+ + VI T+RG GY+ E++ Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVK 224 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ L L+ ++ G+ V A D + A E + I+DL LP GL + Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG- 121 +R RS +V PI++LTAR DKV L GADDY++KPF+I+E++AR++A++RR Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 SQ +S+ ++D R + N + + L++ E+ ++E L R+ G+ V ++ + +++ Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 AELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 + TID + RLR K++ I TV G GY F Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L ++D+ + LK ++ G+ ++ A EA L E PD+ I+DL LPD DGL Sbjct: 75 LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLEF 134 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN--S 120 + +S LP+++LTAR+ DKV L GADDYV KPF E++AR++A +R N + Sbjct: 135 CCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPGA 194 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A +++ ++DL + + ++ + + LTA E+ ++ L+ N +V+++ + +L+ Sbjct: 195 GTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLWR 254 Query: 181 DAELRE-SHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 D+++ S IDV + LR+K++ Q I TV G+GY F Sbjct: 255 DSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRF 296 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 + V+ED+ + L + G V + K A ++ + PDI ++DL +P+ DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 IRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RS+ +P+++LTA+ + DK+ L GADDYVTKPF E++AR++AL+RR+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 ----GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 A ++ + E++I + + LT ++ ++ L+ + GKV+S+D ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ + TIDV + +LR+ ++ I T+RG GY +E Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG--NCIKTIRGVGYKWEC 227 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 8/226 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED + L + +Q AGH A A+EA + + +PD+ ++D LP G++L Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66 Query: 63 IRRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 R R + ++PI++LTAR DKV+ L AGADDY+TKPF +E++AR++A++RR + Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126 Query: 121 GL-ASQVISLPPFQVDLSRRELSINDE-----VIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ++ + + VD S R I+L E+ ++ L+ + +V S+ +L Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + +++ D E T+DV + RLR+ + E++ TVRG GY F Sbjct: 187 LDKVWGDHVFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D + +K + G++V A + +EA + PD+ ++D +P+ G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R R +PI++LTA+ DK+ G DDYV KPF + E+ AR++ +++R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 122 LASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V++ + +RE+ + + + LT E+ ++E ++N GK S+ L+ Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFELR 223 +A TID + LRKKI+ E I TV G GY + R Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPR 228 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ L + + VD A+D +E + + D+ ++DL LP DG+ Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S R+ R++ P+L+LT++++ KV L AGADDYV KPF +E++AR++AL+RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ ++D S E++ + +++ LT EY ++E +RN+ ++ S +L+ QL+ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 E T+ + LR+K++A ++ I TV G GY + Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222 Score = 86.7 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 7/143 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RV++V+D+ + L+ + G +V ++ + P++ I+ + +P G+ Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR- 118 L + R LPIL LT R + ++ AGADDY++KP E++ R+ + R Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI---LNRL 512 Query: 119 -NSGLASQVISLPPFQVDLSRRE 140 ++ + + + +RR+ Sbjct: 513 EHNRWLQNLAEIDTLTLVANRRK 535 >UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnospiraceae RepID=C2KX66_9FIRM Length = 228 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 126/220 (57%), Gaps = 1/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED +L +K+ ++ A ++VD A D +EA Y I D+ I+D+ +P +G Sbjct: 1 MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R LPIL+LTA+ +D++E L GAD Y+TKPF E++A + AL+RR Sbjct: 61 QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR-Q 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S +DL ++LS +KL+ E+ +M L++ +++SK+ ++ +++ Sbjct: 120 GQEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWG 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++V +G LRKK++ + I + RG GY Sbjct: 180 YDSDAVENHVEVYVGFLRKKLRLLESRVSIQSRRGLGYFL 219 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI----PDIAIVDLGLPDE 57 R+LVVED+ L + G +V A + AD L H D+ I+D LP Sbjct: 5 RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64 Query: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 DG++L+RR R+ +P+L+LTAR++ D+V+ L AGADDY+ KPF E++AR++AL+R Sbjct: 65 DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124 Query: 118 RNSGLASQ-VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 R + S+ ++L R ++ I LT E+ ++ L + G+ VS+D L Sbjct: 125 RFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAR 184 Query: 177 QLYPDAELRE--SHTIDVLMGRLRKKIQAQYP--QEVITTVRGQGYLF 220 +++ + + IDV + RLR+KI P ++++ T+RG GY+ Sbjct: 185 EIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYML 232 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+ ED+ + + + + G+Q+ A D +EA + + D+ I+D+ +P DG + Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +PI+ L+A+ S DK+ L GADDY+TKPF+ E++AR+ A +RR L Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 123 ASQV---------ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 V I +D +R +++ ++ I LT E+ I+ L + KV S + Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 174 LMLQLYPDA-ELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLFE 221 + Q++ +A +T+ V + LRKK+ + + Q+ I TV G GY F+ Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 116/223 (52%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 ++VL++ED+A + +++ + AG+ A D +E PD I+D+ LP +G Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 + + R D +PI++LT + D ++ L+ GADDY+ KPF E++AR++ ++RR Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S + + + + IN+E +++ E + L N +V+++ L+ ++ Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+DV + R+R K+ + I T+RG GY FE Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFE 227 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D L LK ++ + + VD A + ++ + I+D+ LP DG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R ++ P+L+LTA+ D+++ L G+DDY+ KPF + E++AR++AL+RR++ Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + + ++ ++ + +KLT EY + E L+ N +VV+K +L ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 181 DAELRE--SHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 D S+ IDV + LRKKI + +I T RG GY+ Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDEN-HLIIRTKRGIGYII 234 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN---EHIPDIAIVDLGLPDED 58 R+L+V+D L L ++ GH VD A + A L D+ ++D LP Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GLSL ++ R D + PIL LTA+++ D+VE L AGADDY+ KPF + E++AR++AL+RR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 NSGLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 +G + + ++D + +I L+ E+ ++E + + G++++ + + Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ + S+ + + LR++++ E+I V G+GY F Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRF 226 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 130/231 (56%), Gaps = 15/231 (6%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVEDNA + L+ ++ + VD EA + L D ++DLGLPD DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 SLIRRWRSN-----------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVM 109 ++RR R D + P+L+LTAR+ ++++ L GADDY+ KPF I+E+ Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 AR++A++RR G A+ VI +VD + R + + ++++++ E++++ L++ G+V+ Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 S+ + LY ES+ ++V + LRKK+ I T+RG GY Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNAS----IVTMRGVGYFL 248 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VE++ L + VD A D++ A D+ ++D+ LPDE+G+ Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L R+ R+ + PIL+LT + + D++ AGADDY+TKP+ + E++AR++AL+RR S Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++V+ Q+D + E+ + + LT EY ++E +R+ ++ + +L+ ++ Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 E I + LR+K+Q + I T+ G GY + Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222 Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+V+D+ L L+ Q+Q G QV D+ + YL PD+ ++D+ +P G+ Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 LIRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + +S LP+L+L+A L+AGADDY+ KP +++ R+ Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 76.3 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--EDGL 60 VL+++D+ L ++ + ++ D A L PD I+DL P+ E GL Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+ + + ++P+LVLT +VEV GA+ ++ KP EV + L+ R Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRID 602 Query: 121 GLASQVISLPP 131 + ++++ + Sbjct: 603 TINARLLIVDD 613 >UniRef50_Q20WN2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=Q20WN2_RHOPB Length = 221 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 142/219 (64%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ + L+ +Q AG+ V+ D +EA + + ++DLGLP DGL Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++RWR ND P+L+LTAR SW ++V+ + AGADDY+ KPF +EE++AR+++++RR++ Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A VIS+ +D + ++ + + L+ EY ++ L + G+VVS+ L +Y Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + + +S+ I+VL+GR+RKK+ + E+I T RG GYL Sbjct: 181 NEDAHDSNAIEVLIGRVRKKLGS----ELIETRRGFGYL 215 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 132/220 (60%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED+ L+ L+ ++ G VD ++ A L + ++DLGLPD+DGL Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R D +LP++V+TAR++ D++ L GADDY+ KPF +EE++AR++A+ RR + Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A V+++ ++D +R ++ + + L+ E+ ++ L+R G V+S++ +LY Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E ES+ + V + LRKK+ + I TVRG GY Sbjct: 216 WGEEIESNAVQVHIHNLRKKLG----HDTILTVRGVGYRI 251 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL++ED+ + + +++ V AE + A + E+ DI ++D+ LP DG+ Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++ R + PIL+L+A + DKV L +GADDY+ KPFH +E+++R+ AL RR Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 ---GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + + ++ +++ ND++I L+ EY ++ L+ N KV+S+ ++ Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ ++ +DV + LR KI+ + + I T++G GY+ + Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNH--KFIHTIKGIGYMLK 222 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVVED+ ++ L ++ + A D + A + D+ I+DL LP +DG S Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +++ N +P+++LTAR DK+ + G DDY+TKPF E+M R++A++RR Sbjct: 63 VLKEI-KNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 122 LA--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +++ V+L RE+ N E ++LT+ EY ++E L +N ++ +K+ +M +L+ Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 PD + + + VL+ RLR+KI+ +I TV G GY E Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAE 224 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+A +K ++ G+ VD E A + +H D ++D GLP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R ++ P++ +TA++ D+VE L GA+DY+ KPF++EE+ AR+++ +R++ Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A Q + ++D + LS ++ + LTA E+ I+ L++ + +++ L LY Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ES+ I+V + ++RKKI Q I TVRG GY Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQ----YIKTVRGLGYRM 216 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 126/231 (54%), Gaps = 13/231 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D +R L ++ G+ V A D + A + PD+ ++D+ +P DGL+ Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-- 120 RR R+ D +LP+L+LTAR+ D+V L AGADDY+ KPF ++E++AR++AL+RR + Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALT 135 Query: 121 -----------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 V+ ++D RE++ +I LT EY ++E + + + + Sbjct: 136 GEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQAL 195 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ ++ ++ S+++DV + +RKK + ++ TVRG GY Sbjct: 196 TREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYAL 246 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D +R+ +++ + G+ + +A + KEA + H + I+D+ +P+ DG Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R +++LPIL+LTAR DKV+ L GADDY+TKPF EE++AR+ AL+RR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 N ++ + ++D+ ++ + D + LT E+ +++ L+ N +V ++D L+L++ Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + L + T+D + +R K++ + +I TV G GY + Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLK 227 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D LR L++ ++ G V +A D + A Y PD+ ++DL +P+ G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R + + + P++VLTA+ DK+ L GADDYVTKPF++ E++AR++A++RR Sbjct: 64 LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122 Query: 123 A--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D + R + + + LT E+ I+ TL+ G+V S+ L+ ++ Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFEL 222 DA TIDV + LR KI+A + I TV G GY F L Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFAL 225 >UniRef50_B2V5Y8 Two component transcriptional regulator, winged helix family n=5 Tax=Aquificales RepID=B2V5Y8_SULSY Length = 219 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VEDN L + ++ ++ G+ VD A D KEA ++ D+ I+DL LPD DGL Sbjct: 1 MKILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ + P+++LTA+ +DK+ L GADDY+TKPF ++E++AR++A+ RR S Sbjct: 61 EVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRRVS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ + ++DL + + + + ++LT Y I+E L+RN GK+VS ++L+ + + Sbjct: 121 AEKKDIVLIDNLEIDLKNKVVKKSGKFVELTPKLYCILEQLVRNRGKIVSYETLLSKCWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E+ T+ + LRK I +++I T+ G GY E Sbjct: 181 ITEVPSRETMRANIKNLRKLIDPD--KKIIKTIEGVGYRIE 219 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 345 5e-94 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 343 3e-93 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 342 5e-93 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 338 1e-91 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 336 3e-91 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 335 6e-91 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 333 3e-90 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 332 6e-90 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 331 1e-89 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 330 3e-89 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 329 3e-89 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 329 4e-89 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 328 6e-89 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 328 6e-89 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 328 7e-89 UniRef50_Q026B5 Two component heavy metal response transcription... 328 8e-89 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 328 8e-89 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 328 9e-89 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 328 9e-89 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 327 1e-88 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 327 2e-88 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 327 2e-88 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 327 2e-88 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 327 2e-88 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 327 3e-88 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 325 7e-88 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 325 8e-88 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 324 2e-87 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 323 3e-87 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 323 4e-87 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_B8G179 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 322 7e-87 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 322 7e-87 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 322 7e-87 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 322 8e-87 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 321 9e-87 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 321 1e-86 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 320 2e-86 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 320 3e-86 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 320 3e-86 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 320 3e-86 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 319 5e-86 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 319 5e-86 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 318 6e-86 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 318 8e-86 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 318 1e-85 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 318 1e-85 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 317 3e-85 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 316 3e-85 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 316 4e-85 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 315 6e-85 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 315 8e-85 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 315 8e-85 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 315 1e-84 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 314 1e-84 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 314 1e-84 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 314 1e-84 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 314 2e-84 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 314 2e-84 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 314 2e-84 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 313 2e-84 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 313 2e-84 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 313 3e-84 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 313 3e-84 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 313 3e-84 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 313 3e-84 UniRef50_B8G869 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 313 4e-84 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 312 4e-84 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 312 5e-84 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 312 6e-84 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 312 6e-84 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 311 1e-83 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 311 1e-83 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 311 1e-83 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 310 2e-83 UniRef50_UPI00017468BB two component transcriptional regulator, ... 310 2e-83 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 310 3e-83 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 309 3e-83 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 309 4e-83 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 308 6e-83 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 308 6e-83 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 308 7e-83 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 308 7e-83 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 308 8e-83 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 308 9e-83 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 308 9e-83 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 308 1e-82 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 307 2e-82 UniRef50_UPI0001B559F0 two-component system, response regulator ... 307 2e-82 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 307 2e-82 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 307 2e-82 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 307 2e-82 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 307 2e-82 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 307 3e-82 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 306 3e-82 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 306 4e-82 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 306 4e-82 UniRef50_Q6AQP4 Probable two-component system response regulator... 306 4e-82 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 306 4e-82 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 305 7e-82 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 305 7e-82 UniRef50_UPI00016C506D two component transcriptional regulator, ... 305 7e-82 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 305 8e-82 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 305 9e-82 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 305 9e-82 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 305 1e-81 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 305 1e-81 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 304 1e-81 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 304 1e-81 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 304 1e-81 UniRef50_A4CE30 Probable two-component response regulator transc... 304 2e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 303 2e-81 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 303 2e-81 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 303 2e-81 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 303 2e-81 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 303 2e-81 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 303 3e-81 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_D1C280 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 303 3e-81 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C4L340 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 302 4e-81 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 302 4e-81 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 302 5e-81 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 302 5e-81 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 302 6e-81 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 302 6e-81 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 302 6e-81 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 302 7e-81 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 302 7e-81 UniRef50_A4AL32 Putative two-component system response regulator... 302 8e-81 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 302 8e-81 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 301 9e-81 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 301 9e-81 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 301 1e-80 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 301 1e-80 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 301 1e-80 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 301 1e-80 UniRef50_B8G223 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 300 2e-80 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 300 2e-80 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 300 3e-80 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 300 3e-80 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 300 3e-80 UniRef50_C9ZA01 Putative two-component system response regulator... 300 3e-80 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 300 3e-80 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C3QD36 Two-component system response regulator n=8 Tax=... 300 3e-80 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 299 3e-80 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 299 4e-80 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 299 4e-80 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_A6M1X5 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 298 8e-80 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_B0C620 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 298 1e-79 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 297 1e-79 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 297 1e-79 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 297 1e-79 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_B8I014 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C8W872 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 297 2e-79 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 297 2e-79 Sequences not found previously or not previously below threshold: UniRef50_B4B5Q6 Response regulator receiver modulated diguanylat... 297 2e-79 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 345 bits (888), Expect = 5e-94, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 135/221 (61%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED + + +++ G VD EA + D A++D+ LP DG+ Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R +SLPIL+L+AR +DK+E L++GADDY+ KPF ++E++AR++AL+RR + Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ V + ++L RE+ + I+LTA E++I+E L+R G+V ++ + +++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + +LRKKI Q++I TVRG GY E Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 129/219 (58%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED L ++++++ G+ V D E PD+ ++D LP GL + Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +PI++LTA++ D+V L AGADDY+ KPF++EE++AR++A +RRN Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 ++ ++ + RE+ +I+LTA E+ ++E L+ + +V+S+D ++ +++ Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +S+ I+V + LR K++A+ + +I TVRG GY+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLR 224 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 342 bits (879), Expect = 5e-93, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 117/222 (52%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED A L+ + + G+ VD D +A + E D ++DL LP DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R P+L+LTAR D++ L AGADDY+ KPF E+ AR++AL+RR + Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + ++D + + + L+A E+ ++ L+R+ +V+++ ++ ++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 A S+ +D + +R+KI +I TVRG GY Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRT 251 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 340 bits (873), Expect = 2e-92, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVEDN L ++K ++ G VD A D E + D I+D+ LP G+ Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 SLIRRWR-SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + R R +PIL+LTA S +++VE L+ GADDY+ KPF + E++AR++AL+RRN Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + + ++L RE+S E + L++ E++++E +RN G V S++ ++ +L+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ +DV + LRKK++ E I TV GY + Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLK 222 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDED 58 M++L++ED L LK ++ G+ VD A D +EA Y + D+ I+D+ LP D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 G+SL + R+ + PIL+LTA++ +DK+ L +GADDY+ KPF EE++AR++AL+RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 L V+ + +D + + D I LT E+ I+E L+RN +++SK+ ++ + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + S+ ++ + LRKK++ + + +I T+RG GY + Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED L LK +++ + VD A D + D+AI+D+ LP GL Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R + P+L+LTA+++ +D+V L AGADDY+ KPF +E++AR++AL RR Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +A I PF++DL+ R ++ N E + LTA E+ ++E +RN KV+SK+ ++ +++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + LRKKI ITTVRG GY+F Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 142/221 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VED + + +++ G+ V+ AED ++ + D+ ++D+ LP DGL Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R + ++P++++TAR +++E L+ GADDY+TKPF+++E++AR+QAL RR+S Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + ++ + V+LS RE+ + E+++LT E+ ++E L+R+ G+V+++ ++ ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + RLRKK+ A + +I TVRG GY Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMR 237 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 335 bits (861), Expect = 6e-91, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 136/222 (61%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED L + +++ + VD D +EA Y+ D I+D+ LP DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I+R R+ +PIL+LTAR++ DKV+ L GADDY+ KPF EE+MAR++ L+RRNS Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A VI++ +VDL + + + +IKL+ EY+I+E LIRN GK++ ++ + ++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ IDV + LRKKI Y ++I T+RG GY+ + Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLRV 222 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 126/221 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ +L L + + V+ AED + Y D+ + D+ LP DG+ Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L +R RSN S PIL++TA++ D++ L AGADDY+ KP ++ E+ AR++AL+RR Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + ++D S E++ +++V+ LT EY+++E L+RN +V S+ ++ L+ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+ + LR K++ + I V G GY + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLK 221 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVV+D+ L+ L ++ G ++ +D L PD+ I+D+ +P G+ L Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 IRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ LPI+ LTA + +V +AG DDYV KP E++AR+ + R+ Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+AL+ L + + V+ A D K A + + D+ ++D+ LP DG+ Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL ++ RS+ +PIL+LT R+S DK L AGADDYV KP EE++AR++AL+RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ ++D S E++ + + LT EY ++E L+RNN +V S ++ L+ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFELR 223 + + + LR K++A +++ TV G GY + + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQ 224 Score = 94.8 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +++LVV+D+ L+V + G ++ ++ + PD+ I+D+ +P G+ Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 SLIRRWRS--NDVSLPILVLTARE--SWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 L + RS +PIL LT ++V S GADD+V+KP I E++ R+ + Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILNRL 499 Query: 117 RRNS 120 R Sbjct: 500 ERVR 503 Score = 70.5 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV +D+ + R LK + G++V + +A PD+ ++DL +P +G Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 IRRWRSNDV--SLPILV 77 + + +PI++ Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 41.2 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L++ED+ L L + A+ +EA + + PD+ I+DL LP+ DG + Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 LIRRWRSNDV--SLPILVLTARE 82 ++ + +D S+P++V +A++ Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKD 1287 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 140/222 (63%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L++ L ++ + VD + ++A Y+N D+ ++D+ +P +GL Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R+++ + P+L+LTA+++ D+V+ L GADDY+ KPF +E++AR++ LMRR + Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S V + VD + +++ D+VI L++ E+ I+E +IRN V+++D + ++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ IDV + LRKK+ +Q+ ++I TVRG GY+ + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRV 234 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED + LK +++ VD A D + + D+ ++D LP G+ Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R ++P++ LTAR++ D V L AGADDYV KPF EE++AR++A +R+N+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ +D N + LT E+ ++E L+RN +V ++ ++ ++ Sbjct: 121 PTTGP-LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ IDV + LR+K++A +I TVRG GY+ Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRT 221 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 135/223 (60%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L + ++ + VD D +EA ++ D+ I D+ +P+ DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 I+R R + + P+++LTA+++ +DK+ L +GADDY+ KPF +E+ AR++ LMRRN Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 GLA+ VI + +D+S+++++ N E I LT EY ++E L++N ++S+D ++ ++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 S+ +DV++ +RKK+ + +I T RG GY + + Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 329 bits (846), Expect = 3e-89, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ LL + + + VD A D + +N D+ ++D+ LP DG+ Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R+ R + IL+LTA+++ DKV L AGADDYV KPF +E+ AR++AL+RR + Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D S E++ D + LTA E+++++ +RNN ++ S+ +++ QL+ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 DA-ELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + E +TI + LR+K++ + I TV G GY + Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLK 223 Score = 76.3 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 10/117 (8%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R++VVED+ + ++ ++ G + ED+ L E PD+ I+D +P +G+ Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 LIRRWRSNDVS--LPILV----LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + R++ LP++ L+A +++ + GADD V+KP ++A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 Score = 39.7 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 17/107 (15%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LV+ ++ + L + ++ G QV A + A + PD+ ++DL + +ED L L Sbjct: 355 LLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKL 413 Query: 63 IRRWRSND----------------VSLPILVLTARESWQDKVEVLSA 93 + +P+LV T R ++ D L Sbjct: 414 LIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRL 460 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +L+VED + L+++++ G+ V + E E + ++D+ LP GL Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++RR R D P+++LTAR+S DKV L GA+DYVTKPF IEE++AR++A +R+N Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 LASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + ++ +V+ RE+ D+ ++LT E+ ++ ++++ +V++++ ++ + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + +++ +DV + +RKK+ Y +++I T+RG GY + Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 328 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 126/223 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED ++ +Q VD + D EA + D ++D+ LP DGL Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R+ R P+L+L+AR ++VE L+AGADDY+ KPF + E++AR++++ RR++ Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S ++ + +D R+ +LT EY ++E L+R G++ + +++ +++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++ +DV + RLR+K+ + +++ TVR GY+ + + Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 328 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 134/233 (57%), Gaps = 12/233 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL ED + +++ +++ G V+ + A ++ D+ ++D+ +P +DGL Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R + P+++LTAR+ D+++ L+ GADDY+ KPF +EE++AR+ A++RR++ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GLASQVISLPPFQVDLSRRELSIN------------DEVIKLTAFEYTIMETLIRNNGKV 168 G ++++ PF++D R ++ +V++LT E+ ++E L+R+ G+V Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 VSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ ++ ++ ++ +DV + RLRKKI + + I +VRG GY F Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFR 233 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 328 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 126/220 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ +L L ++ + VD D + Y + D+ ++D+GLP +DG+ Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L RR R+ +PIL++TA+++ D++ L AGADDY+TKP + E+ AR++AL+RR S Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ + Q+D +++ + + LT EY ++E +R+ G+V S+ L+ L+ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + LR+K++A + I + G GY Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRL 220 Score = 91.7 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D+ + + + +Q G + + E L PD+ I+D+ +P G+ L Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 IRRWRSND--VSLPILVLTA-RE-SWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 + RS+ SLPI+ LTA R+ +V + GADD+VTKP + E++ R+ + R Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 NS 120 Sbjct: 500 TR 501 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED + L ++ AG+ VD A A +++ D+ ++D LPD DGL Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + RS P+L+L+AR + D+V+ L GADDY+ KPF E++AR++AL+RR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR-G 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + + +D RR+++ E I L E+ I+E ++RN G+ +S+ ++ ++ Sbjct: 120 QPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ +DV + LR KI ++ Q++I TVRG GY+ E Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLV+ED+ + +L ++++G+ VD ++ K + D+ +VD LP+ DGL Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++R R+ P+LVL+A D+V+ L AG DDY+ KPF E++AR++AL+RR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + + ++DL R + N I L E+ ++E +RN G+V+++ L+ ++ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + +++ IDV + RLR KI + ++ T+RG GY+ Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D+ L + +K+ ++ G VD A D K Y+ ++ + I+D+ LP+ DG + Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 IRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ N+ +PI++LTA+ DK+ L GADDYV KPF E++AR++AL+RR+ Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +++ VD ++ + D + L E+ ++ LI+N +V +++ ++ ++ Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQ-YPQEVITTVRGQGYLFELR 223 + + + T+D + R+RKK++ + +I TV G GY FE++ Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN---------EHIPDIAIVDL 52 R+LVVED A++R + + +Q G VD A D + A Y PD+ ++DL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 LP +GL R R V++PIL+L+A+++ D+V L GADDY+TKPF E++AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 QALMRRNSGLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 +AL+RR+ ++ V+ ++ + ++D + L+ E+ ++E +R+ +V Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 S+D L+ +++ + +S TIDV + LR+KI+A + TVRG GY Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 328 bits (842), Expect = 9e-89, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ L +K ++ + V+ A D + D+ ++DL LP DG+ Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R PIL++T ++ KV+ L AGADDY+ KPF+I+E++AR++AL+RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ ++ P ++ S +++ E+I LTA EY I+E +RN ++ S+ +L+ L+ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 E + + + LR+K++ +I TV G GY Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 103 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++++V+D+ L ++ ++ G + ED K L PD+ I+D+ +P+ G+ Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + R++ LPIL L+ + E AGADDY+ KP E++ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 47.0 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG-- 59 +L+V+++ +L + Q + G A D +A + PD+ ++D+G PD + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP 102 L L++ R +P ++ + + ++ +V+V GA ++ KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKP 476 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 120/220 (54%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +LV+ED A L ++ ++ G++V A D + PD+ ++D LP GL Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR RS +P++++TAR+ D+ L AGADDYV KPF I+E+++R++ +R+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + +D RE++ + ++LTA EY ++ L+ + +V+++ ++ ++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +S+ I+V + LR KI+ + +I TVRG GY+ Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLR 229 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ L + L + + + V+ D A + + D+ ++D+ LP DG+ Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R+ RS+ +PIL+LT +S +K L AGADDYV KPF EE++AR++AL+RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A ++ Q+D S E+ N ++ LT EY ++E +R++ +V S ++ ++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + + + LR K++ +++ TV G GY + Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLK 222 Score = 90.1 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 6/115 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL V+D+ + L+ + G QV +D ++ L + PD+ I+D+ +P +G+ Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 LIRRWRS--NDVSLPILVLTAR--ESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + R+ LPIL LT ++V S GADD+V+KP E++ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 80.1 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV +D+ L+R L+ ++ G++V KEA + PD+ ++DL +P +G Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 IRRWRS--NDVSLPILV 77 + + +PI++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 43.9 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 12/122 (9%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+A L + + A+ +EA + E PD+ I+DL LP+ DG + Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 LIRRWRSNDV--SLPILVLTARE-SWQDKVEVLSAGADDYV------TKPFHIE--EVMA 110 ++ + + ++P++V +A++ ++ L G +++ TK F E++ Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620 Query: 111 RM 112 R+ Sbjct: 1621 RI 1622 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVVED+A LR L + G+ ++ AED +A P + I+D+ LP DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L R R+ S+PIL+LTAR S DKV L AGADDY++KPF + E++ARM+AL+RR+ Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 LASQV-----ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 SQ + + ++ + R + N + + E+ + +++N +V S++ L+ Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFEL 222 +++ + T+DV + LR+KI+A + TVRG GY FE Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED+ L+ L+ + D + V+ A D + A + D+ + D+ LP DG+ Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L ++ RS +PIL+LT ++S D+ L AGADDYV KPF EE+ AR++AL+RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ Q+D E+ D ++KLT EY ++E ++RN +V S ++ ++ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + + + LR+K++A ++I TV G GY + Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLK 222 Score = 92.8 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 10/147 (6%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+++V+D+ + + + G +V ++ + L PD+ ++D+ +P+ G+ Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 LIRRWRS--NDVSLPILVLTARESWQDKV-EVLSAGADDYVTKPFHIEEVMARMQALMRR 118 L R R+ LPI+ LTA + D V +V ++GADD+++KP E++ R+ + R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607 Query: 119 NSGLASQVISLPPFQVDLSRRELSIND 145 +S +D R LS ++ Sbjct: 608 TRLQR--RLS----TIDPLARVLSRHE 628 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D +R ++ +Q AG+ ++A D A L+ D+ I+D+ +P DG++ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 +R R+ ++ P+++LTAR DK+ L GADDYV KPF E++AR++A++ R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S + ++ +D + + + E + LT E+ ++ L N G +S++ ++ ++ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + E T+D + LR + + I TV G GY F+ Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFD 294 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L +K +++ +VD A D + ++ D+ ++D+ LP +G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R P+L+LTA S DK+ AGADDY+ KPF E+MAR++AL +R+S Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G+ + V+ + ++DL+ + D+ I+LTA E+ +++ L+RN G+VVS+ + ++ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + ++ IDV + LRKKI +P ++I TV G GY+ + Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKE 229 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 3/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+A + + ++ G+ VD A D D A+VD+ LP+ DGL Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+RR R+ ++P+L L+AR S +D+V+ L AG DDY+TKPF E+ AR+QAL+RR S Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +S +DL R +++ + ++L E++++E L+R+ G+ V+K ++ ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVLM RLR KI + I T+RG GY+F+ Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTR--IETLRGVGYVFK 225 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL+VED + + ++ V D + + + D+ I+D+ LP DGL Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R R V PI++LTAR D+V+ L GADDY+ KPF++EE+ AR+QAL+RR+ Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+ + Q+D R ++ + ++LT+ E++++E L+R+ +V+++ L+ ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKK---IQAQYP-QEVITTVRGQGYLFELR 223 ++ +DV + R+R K ++ I ++RG GY +R Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLSIR 227 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED+ + + + ++ + V D E + D+ I+D+ LP DGL Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + + R+ ++ PIL+LTA++S D+V L GADDY+TKPF + E+ AR++A +RR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 ++ A + +D ++R L+I D+ I LTA E+ ++ + + G+V S++ L Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 + ++ HT++ + RLR K++ + + TV G GY F Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 129/222 (58%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED +L ++ VD + ++A Y+N D+ ++D+ +P DG+ Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S + + R++ + P+L+LTA++S QDKV L+ GADDY+ KPF +EE+ AR+ AL RRN+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A I + P +++ +R + + E I LTA E+ ++ L N V+S+ ++ ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ IDV + LRKKI ++I TVRG GY+ + Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKT 222 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED + L+ + G+ AED + E D+ ++D+ LP DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RR R LP+L+LTAR+ + KV L AGADDY+TKPF EE++AR++AL+RR Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + ++DL R + ++L++ E+ ++E L+R+ +V+S+ ++ ++ Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 A S+ +DV + LR+K+ +ITTVRG GY F+ Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+A + + + VD + + D+ ++D+ LP DG+ Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ RR RS PIL+LTA+ +D V L AGADDY+ KPF E++AR+QAL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ ++ E++ +++ LT EY+++E +R+ +V S+ ++ Q++ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 ++ TI + LR+K++A Q +I TV G GY Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 84.4 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +++++D+ LK + G V + ++ L PD+ I+DL +P GL+L Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 IRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVM 109 + R +D S+PIL L+ + + ++L GAD Y+ K +EE++ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 325 bits (834), Expect = 8e-88, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 119/216 (55%) Query: 7 EDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRW 66 ED+ L ++ + + +D A D E D+ ++D LP DG+ L ++ Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQV 126 R+ S PI++LTAR++ D+V L AGADDY+ KPF EE++AR++AL+RR+ G+ S V Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 127 ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRE 186 + Q+D ++ D I LT EY ++E +RN ++ S DSL+ +++P + Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 187 SHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ + LR+K++ +VI+TV G GY Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLRT 217 Score = 97.1 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 2/112 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D++ + L+ +Q G +++ D + L + PD+ ++D+ +P G L Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 IRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 + RS LPIL ++A + EV S GADDY+ KP E++AR+ Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARV 682 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + + ++ +G VD A + + + +AI+D+ LP DGL Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I R + PI++L+A+ S +D+V L G DDY++KPF E++AR+QAL+RR++ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + +++ ++L RE+S + ++L E+ ++E +RN GKV+SK +M ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ +DVL+ RLR KI Y ++++ T+RG GY+ + Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 113/222 (50%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D L LK + G VD A D D ++D+ LP +G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R PIL+LTA++ D+ E L GADD + KPF ++AR++AL+RRN Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ +D + ++ + I LT E++ +E L+RN G V+ K ++ ++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +S+ ++V +G LRKKI + + ITT+RG GY E Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEE 222 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 123/223 (55%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ +L L +Q + VD A+D + Y D+ +VD+GLP DG+ Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R R + + PIL++TA+++ +K+ L AGADDY+TKP I E+ AR++AL+RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ + +D E++ D +KLT EY+++E +RN +V S+ ++ L+ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + ++ + LR++++ I V G GY + Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 87.5 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L V+D+ +L L ++ G + D+ + L + PD+ I+D+ +P DG+ L Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 IRRWRSNDVS------LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 R++ LPIL LTARE+ +V A DDYV KP E++ R+ + Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 117 RRNS 120 R Sbjct: 521 ERAR 524 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLV+ED+ L+ +++ GH D A D + + D+ IVD LP DGL Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+I+ R+ P+L+L+A D+V+ L AG DDY+TKP+ E++AR++AL RR + Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Q IS+ +D ++ + E I L EY ++E L+++ G+VV++ L+ ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ IDV + RLR KI + + ++ TVRG GY Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIR 258 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ +L L + + VD +D + Y + D+ I+D+ LP+ DG+ Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL +R+R+ ++PIL+LTA+++ KV+ L AGADDYV KPF E++AR++AL+RR S Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +++ ++ S E++ N + LT EY ++E L+RN V S + L+ +L+ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + T+ + RLR K+ A + I T+ G+GY + Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLK 222 Score = 94.4 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V++++D+ L ++ G +V D ++ L PD ++D+ +P +G Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + RS+ LP+L L+ + + + G DDY+ KP E+ R+ +RR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRRL 643 Query: 120 SGLAS 124 + + Sbjct: 644 QRVRA 648 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 VLVVED L L+ ++ G+ V A D ++A E PD+ +VD LP G+ Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR- 118 + RR R + +PI++LTAR D+V L GADDYV KPF + E+ AR++A++RR Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 GLA VI +D + D I L E+ +++ L+++ G+V S++ L+ + Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + E+ T+DV +GRLRK + + ++ I TVR GY F++ Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDV 227 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 127/233 (54%), Gaps = 11/233 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED + ++ + +AG+ V A D + E+ + I+D+ LP +G+ Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R ++ PIL+LTA S ++ V L +GADDY+ KPF E++AR+++L+RRN+ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 -----------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 V+ + ++DL+ + S + I LTA EY ++E ++RN +V+ Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ ++ ++ + +DV + LRKK+ + +I TV G GY+ + Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKE 233 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 130/226 (57%), Gaps = 7/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+A+++ + ++ G+ V AE+ +A LN+ PD+ ++D+ LP+ DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 LIRRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR-- 117 + ++ R ++P+++L+AR+ D+V L GADDY+TKPF E++AR++A +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 118 -RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 RNS ++ ++ ++I E + LT E+ ++ ++ +V S++ L+ Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ ++ T+DV + LR K+++ +I +VRG GY + Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVS--PIIESVRGVGYRLAV 226 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 116/220 (52%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED + L + + GH VD D + A ++ D ++D+ LP DG Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R V P+L+LTAR + D++ L GADDY+TKPF+++E+ AR++AL RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + ++D S + D I+L+ E+T++E LIR G V ++ L+ + + Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 A S+ +DV + LR KI + + T+RG GY Sbjct: 204 AYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLR 243 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 135/235 (57%), Gaps = 14/235 (5%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVV+D A +R L ++ +G++V+ A D + A E D+ ++D+ LP+ DGL Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 SLIRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 + R+ ++ +PI++LTA+ D+V L GADDYV KPF + E++AR++A++RR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 N---------SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 + + + +++ ++D S + ++D+ I LT EY +++ L+ N G+ Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFELR 223 S+D L+ +++ ++ T+DV + LR K++ + I TVRG GY F R Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARR 233 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 13/232 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D + L ++ AG++V A D +A ++DL LP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R V PI+++TA+ DKV L GADDY+TKPF EV+AR++A++RR + Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 ------------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 V+ + Q+D ++ ++ N + I LT E+ ++ + G+V+ Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 S+D+++ ++ E+ +D+ + LR+KI+A +I TVRG GY F Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L + +QVD D ++ Y+ D+ ++D+ LP DG+ Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL + RS++ +PIL+LTAR + QDKV+ L AGADDY+ KP I E+ AR++AL+RR+S Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S V++ +D S ++S N + +KLT EY ++E L+ N + S D ++ +L+ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 + ++T+ + LR+K++A E I TV G GY Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRL 221 Score = 109 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 2/127 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RV++V+D+ + ++ +Q G Q +D ++ L PD+ ++D+ +P +G+ Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + R++ LP+L +TA+ Q + +V AGADDY+TKPF E+ R+ ++R Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 SGLASQV 126 LA++ Sbjct: 617 QNLATRT 623 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 128/222 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LV+ED+ +L L+ + +AGH K + D ++D+ LPD G+ Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ R + + P+L+LTA S D+V L++GADDY+ KPF E++AR+ A+ RR Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + + P +DL+ R+++ ND + LT E++++E L+R G+VV++ L L+ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ ++V + RLR KI + + +I TVRG+GY+ Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLRT 222 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--ED 58 MR+L+VED L + +++ G+ +D ++ E + D I+D +P D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL ++++ R + +S P +VLTA K+ L AGADDY+ KPF I+E++AR++A++RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 ++ + +D + R + +++ I LTA EY +++ L++++G+ +SK+ +M + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + +T++ + LRKKI +Y + I TVRG GY E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +RVL+ +D +R LK ++ + VD A D +EA + ++ I+DL +P DG+ Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 + RR R N+ ++PIL+LTA++ DK+ LS GADDY+TKPF + EV+AR++ALMRR Sbjct: 64 EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 + +++ +D+S+ +++ D+ I LT E +++ N +V +K Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 L ++ + + +T+ V + +LRKKI+A + I TV G GY F Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D A +R L +Q +Q A + +EA + + ++D+ +P+ DGL+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 R R +PI++LTAR D++ L GADDY+TKPF E++AR++A +RR+ Sbjct: 67 ACMRIREFSN-VPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 ---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S +++ ++D R + ++ + I LT E+ ++ ++NN KV S++ L+ Q+ Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + + T+D + LR K+ I TV G GY FE Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEE 227 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ + L ++ H VD A D E Y D+ ++DL LP DG+ Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L +R R+++ + IL+LTAR++ +K+ L AGADDY+ KPF +EE+ AR++AL RR+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ Q+D ++ ++ + LT EY I+E ++N +V+++ +++ +L+ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 +L T+ + LRKK++A ++ I TV G GY Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 119/218 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LV ED L L+ + + GH V + + +A D ++D+ LP DG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R +PIL+LTAR++ D + L GADDYVTKPF E++AR++A+ RR Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S + +D + E+ D I LT E+ +++ L++N G+ VS+ SL+ ++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 E++T+D + LR+K+ Q ++I TVRG GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 132/221 (59%), Gaps = 3/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED L + ++ G+ VD A + +EA + D+ ++DL +P DGL Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + ++R R+ + P+L+LTA++ D V+ L AGADDY+ KPF +E++AR++ L+RRNS Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G + I ++DLS++ + + E I+LT EY I+E L+ N G+++++D + ++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S+ IDVL+ +RKK+ I T RG GY+ + Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA---IQTKRGLGYVVK 218 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLV++D+ + L+ + G++V+ A D + E+ P++ I+D+ LP DG Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + +R+R ++ PIL+L+AR+ + KV+ L+ GADDY+ KPF +EE++AR+QAL+RR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A++VI ++DL RE+ ++ LT+ E+ ++ + + +V++++ ++ +++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 S+ ++V + LR+KI+ + +I TVRG GY+ + + Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSR-IIHTVRGVGYVLKEQ 222 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LV+ED+ +L+ +AGH D A D + D+ +VD LP DGL Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++ R+ + P+L+L+A D+V L AG DDY+TKP+ E++AR++ L RR+S Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 GLASQVI-SLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + I + ++D D I L E+ ++E L+R+ G+VV++ L+ ++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ IDV + RLR KI+ + ++ TVRG GY+ + Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLK 242 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 121/219 (55%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L + ++ VD D +E Y D+ I+D+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R ++ P+L+LTA + +V+ L+ GADDY+ KPF + E++AR++AL+RR + Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +D + R++ + I LT EY I+E L+ N +VV+K+ L L+ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + S T+ + LRKKI + +++I TVRG GY+ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYV 229 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D ++ LK + +VD A D +EA Y+ + DI ++D+ LP DGLS Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + ++ R +PI++LTA+ DK+ L GADDY+TKPF+I EV ARM+A++RRNS Sbjct: 73 VCQQIREFSN-VPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 121 ----GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 S VI ++D R L I D+ I LTA E+ ++E L N GKV S+D+L+ Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFEL 222 ++ ++ T+DV M RLR+KI+ + + T G GY F + Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED+ L + L + + + V+ A D A + + D+ ++D+ LP DG+ Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL R+ RSN++ +PIL++T R S +K L AGADDY+ KPF IEE++AR++AL+RR + Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ ++D S E ++ LT E+ ++E +RN+ +V S ++ L+ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + + + + LR+K++A +++ TV G GY + Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLK 222 Score = 91.3 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D+ ++ L+ + G + E+ + L PD+ I+D+ LP +G+ Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L R R++ LPIL LT + +V S GADD+V+KP E++ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED A + L + + G+ V+ AED + LN D+ I+D LP EDG+ Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+RR+R + + P+L LTAR++ ++V L AGADDY+TKPF +E++AR++AL+RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + V+ + DL + ++ + LTA E++++ +RN GKV+S+ + ++ D Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + S+T++V + LR K++A VI T+RG+GY+ E Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLET 223 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED +R + ++ + V D ++A ++H D+ I+DL LP G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R N +PI++LTA+ +D++ L GADDY+ KPF E++AR++AL+RR Sbjct: 70 VCRAIRDNS-DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 LASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + V+ +D+S ++ + + + LTA E+ ++ TL R G+V S+ L+ ++ Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 TID + LR KI + + TV G GY FE Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVV+D+ +R L+ + G+ V+ A D EA + PD ++D+ +P DGL Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ RS LPILVLTAR+S ++V L AGADDY+ KPF +EE++ARM+AL+RR Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 122 LASQ-----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + ++ +D RE++ I LT E+ ++E LI N +V+++ ++ Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ + ++V +G LR+K +A+ +I TVRG GY+ Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 127/220 (57%), Gaps = 2/220 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLV+ED + +++++ G+ + A D E PD+ I+DL LP DGL + Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R PI++LTA++ QDKVE L +GADDY+ KPF IEE++AR++A +RR + Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 + + + ++L RE+ ++L+A E+ ++E L RN GKV S+ + +++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 S+ +DV +G LR+K++ + +I TVRG GY+ Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLRE 224 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 124/219 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++EDN L L+ ++ GH+VD A D + + D I+D+ LP+ DG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R +P+++LTA++S +D+V L GADDY+TKPF +E+MAR+ ALMRR+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ P +D RE + D + L E+ I+E L+R +V S+D ++ Q++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 S+ +DV + LR K++ ++ TVRG GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYK 219 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 130/242 (53%), Gaps = 21/242 (8%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED + + + G++V+ EA E+ D+ I+DL LP DGL Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 LIRRWR-SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR-RN 119 + R+ R ++ + +P+++LTA+ +K+ L GADDYVTKPF E++AR++A +R R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 SGLASQ------------------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETL 161 L + V P + + I ++ ++LT E+ ++ + Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 IRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 + N+G+V++++ L+ +++ L ++ T+DV + LR+KI +A P +++ TVRG GY Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 221 EL 222 + Sbjct: 243 KE 244 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D+ L L ++ + VD A D + Y+ + I+D+ LP +G+ Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L R+ RS++ +P+L+LTAR+S +DKV L AGADDY+ KP EE++ARM+AL+RR + Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 VI ++ ++ E+S V+ LT EY +ME IR+ +V S DS++ L+ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLFE 221 E +T+ + LR K+ A ++I V G GY + Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 89.0 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 8 DNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWR 67 D+ + L+ + G +V ++ L PD+ I+D+ +P +G+ L + R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 SNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + LPILVLT + + E+ AGADD+++KP E++AR+ + + R+ Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 Score = 39.7 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--EDGL 60 +L+V+ + +L + + G + A A + E+ P I +++L P EDGL Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVE 89 L+ + +P+++ + R S+ D++ Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLT 452 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +LVV+D L L++ ++ G QV A D +EA D+ ++DL LP DGL+ Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R R+ + PI++LTA+ DK+ L GADDY+TKPF+ E++AR++A++RR Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + + + + + +R + ++LTA EY ++E L R+ G V ++ L+ Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 ++ + T+DV + R+R+K++ + T G GY E Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLE 226 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLVV+D+ + L ++ G+ V A D EA + PDI ++D+ LP DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R +PI++LTAR+ D++ L GADDYV KPF +EV+ARM+A+ RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 121 GLA-----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 + +++ + +D + R L+I ++LT EY ++E + + G+V S+ L+ Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 ++ A T+D + LRKK+ A I T+ G GY Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LV+ED+ + L+++++ G V A D KE DI ++D+ LP G+ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + +R R +PI++LTA++ DKV GADDY+TKPF EE++AR++AL+RR Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 LA--SQVISLPPFQVDLSRRELSIN--DEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + ++ S E+ + +I+L+ E+ +++ L+ N G V+S+D ++ + Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ + + +D+ + LR KI Y ++ I TVRG G++F+ Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL++ED+ + + +K+ + D G D A D Y + D+ I+D+ LP DGL Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + +R R N + +PIL+LT+R DKV L+AGADDY+TKPF I E+ AR+ A +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 LASQ-------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 +D ++++ + I++TA E+ ++ ++N G+ S+ L Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 + ++ + HT++ + RLR KI+ + I TV G GY F Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 124/233 (53%), Gaps = 13/233 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D+A + + + + D +EA E+ P++ ++DL LP DG Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R R ++PI++L+A+ DKV L GADDY+ KPF +E++AR++A++RR Sbjct: 66 VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 119 NSGLASQVIS--------LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVS 170 + + QVI+ P ++ S ++ + I++ E + L + +V + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 171 KDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++ L+ ++ + ++ T+DV + RLR+KI+ + +TV G GY FE++ Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVK 236 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+V+D+ L L Q+ + VD D + Y + D+ ++D LP G+ Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L +R R +PIL+LT + ++K+E L AGADDYV KPF ++E++AR++ L+RR Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ Q+D ++ + +++ LTA EY+++E +R+ +V S L+ +L+ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 E T+ + RLR+K+ ++I TV G GY + Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 80.1 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 10/128 (7%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++++V+D+A + + ++ + + N+ +PD+ + D+ +P +G Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKP-----FHIEEVMARMQ- 113 L R RS+ LPI+ L+ + + + GADDY+TKP F ++ R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -ALMRRNS 120 A +RR + Sbjct: 629 TADIRRPA 636 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D A +R L++ ++ + +D+AE+ EA E D+ ++DL +P DG+ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ R + PI++LTA+ ++V+ AG DDY+ KPF EV+ R++AL+RR S Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 --------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 V+ +D ++ + + LT EY ++ L + KV ++ Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQA--QYPQEVITTVRGQGYLFEL 222 L+ +++ + T+D + RLR+K+ + I TV G GY FE+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 LVVED++ + +++ ++ VD A D ++ ++ I+DL LP DG + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 RR R + S PI++LTA+ DKV L GADDY+TKPF E +AR+ AL+RR + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 -GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + + I + + LT E+ ++ L RN G+ + ++ L+ Q++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 PDAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGYLFELR 223 + TID + RLR+KI + + TV G GY E++ Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D + ++ ++ AG+ V D + L PD+ ++DL LP DG+ Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R R ++PI++LTA + DK+ L GADDY+TKPF +E+++R+QA+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 S + V +RE+ I+ I+LT E+ ++ L ++ GKV+S+ L+ Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 ++ L ++ +DV + LR KI+ E I TVR GY Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+ +VED + L+++++ G + + E+ A + + D+ ++D+ LP DG++ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + +R R SLPI++LTA++ +DKV L GADDY+TKPF IEE+MAR++ +R++ Sbjct: 66 ICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 120 ---SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + + + + R E+ ++ E + LT EY+++E ++RN V+++D ++ Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ +++ +DV + LR K+ ++ ++ I TVRG GY + Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ + L+ + +AG ++D A + + + D I+D+ LP DGL Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R+ + P+L+L+A+ S D+V L G DDY+TKPF + E++AR+ +L+RR+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 V + +DL R + DE +L E+ ++E L+RN G+VV++ ++ ++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ ++V + RLR+K++ ++ T R GY Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYAL 252 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED +R K ++ ++V A + E H PD+ I+DL +P +DG Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L R +PI++LTA+ +D++ L+ GADDY+TKPF E++ R+Q ++RR + Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 LA-------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 +A S+VI P ++ R + + + ++LT E+ ++ + ++ +V S+ L Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + ++ S+T+ VL+ RLR+K++ I TV G GY FE Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE 229 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV+ED+ + + + + V+ A DA+ YL D+ I+DLGLP DGL Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S + R SLPIL+LTAR++ DKV L AGADDY+ KPF + E++AR++AL+RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D R +++ N + + LT EY I+E L+R+ +++S+ ++M +P Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 E+ T+ V + LR K++A +I TV G GY Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRL 221 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED L L Q++ +G D D EA + D I+DLGLP DGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ WRS + P+LVLTAR +K+E L+AGADDY+TKPF + E++AR+QAL+RR + Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++ + ++D++ ++ IKLTA E+ ++ L+++ GKVVS+ L+ +Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+T++V +GR+RKK ++I TVRG GY Sbjct: 181 QDFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRI 216 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED +L+ + ++G VD A + + + E D+ I+D+ LP DG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++I+ RS P+L LTA + D+V GADDY+ KPF E++AR++ +R+++ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S+ + + +D+ R + I+LT E++++ L+R G+V+S+ ++ Q++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ +DV + RLR K+ + Q++I TVRG GY+ + Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 137/225 (60%), Gaps = 5/225 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+V+D++ L HL+ ++ ++++ AE+ ++A + E D+ ++D+ LP DGL Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R ++ P+L+LTAR +D+V+ L GADDY+ KPF + E+MAR++AL+RR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +++ P ++ R +++++ I LT+ E++I+E L+ N G VS+ ++ ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 DAELRE--SHTIDVLMGRLRKKIQAQYP--QEVITTVRGQGYLFE 221 + S+ +DV + LRKKI +I T+RG G++ + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIID 229 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 128/221 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L R L + + + VD A+D K + D+ ++D+ +P DG+ Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+ ++ RS + PI++LTA++S D++ L AGADDY+ KP ++E +MAR++AL+RR + Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S VI Q++LS E++ +E I LTA EY ++E + N ++ ++ ++ +L+ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E T+ + LR+K++ + I TV G GY Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLR 221 Score = 67.4 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 26 QVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLTARES 83 +V + + L + P++ ++DL +P +GL L + R + LPIL L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 WQDKVEVLSAGADDYVTK 101 + ++ +AGADDY++K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 64.3 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGL--PDEDGL 60 +L+++D+ L ++++ Q ++ A D A + + P I I+DL EDG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP 102 +L+ + +LPI++ T RES D+++V GA ++ KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 141/219 (64%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED+ L L + DAG+ VD A D +E + + D ++D+GLP DG+S Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ WR N ++P+L+LTAR+ W DKV+ AGADDYV KPFH+EEV+AR++AL+RR++G Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A ++ P +D +S+ +KLT+ EY ++ L+ ++G+VVS+ L+ LY Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+TI+V +GR+RKK+ +I TVRG GYL Sbjct: 210 DFDRDSNTIEVFVGRIRKKLDVD----IIQTVRGLGYLL 244 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 121/221 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVEDN L + + + VD A+D + + D+ ++D+ LP D + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL RR R + PI++L+A + QD V L AGADDY+ KP +E + AR++AL+RRN Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ + ++D S E++ + ++L+ EY ++ L+ + ++ S+D ++ +L+ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + T+ + LR+K++ ++I TV G GY + Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLK 221 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED L +L++++++ G D D D+ ++D+ LP+ G+ L Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R +PI+++TAR D V L +GA+DY+ KPF IEE+ AR++ L+R+ Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 A+Q I + ++ + R + +++E I LT E+ ++ +++N + VS++ ++ ++ Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ +DV + LR KI++ ++I TVRG GY Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLR 230 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 4/225 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED + ++ + GH++ A D + + +H D+ I+DL +P +G+ Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R+ V+ PIL+LTA + ++ V L +GADDY+TKPF + E+ AR++ L+RR Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 GLASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + V++L +D + + + I+LTA E+ ++E L+ N +V+++ ++ Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ ++ +DV + LRKKI + ++I TV G GY+ Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIR 225 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 9/230 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL+V+D + L + G + D + A D ++D+ LP DG+ Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 + +R RS PI++++A+ DKV L GADDYVTKPF E++AR++A++RR Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 120 ------SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 ++ ++ R E+ + E++ LT EY ++ L+++ ++++ Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFEL 222 L+ +++ +E+ +DV +G+LR+KI+ + I T+RG GY F+ Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKE 240 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+ + + L + + G++V+ A D EA PD+ ++D+ LP++DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R +PI++LTA++ DKV L GADDY+TKPF +E++AR++A++RR Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 --LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 SQ I PPF++DL +R + + + + L+ E+ I++ L+ + G+V ++D ++ ++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFEL 222 + E +DV + LR+K++ + I TVR GY F+ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++EDN + ++ G + + D E E D+ I+D+ LP DG+ Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ R ++PI++LTA+++ D+V GADDYVTKPF ++AR++A++RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 GLASQVI-----SLPPFQVDLSRRELSINDEVIK-LTAFEYTIMETLIRNNGKVVSKDSL 174 VI F ++ RE+ +N E ++ LT E+ ++ L++N +V S++ L Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + Q++ + T+DV + RLRKK+ A + + TV G GY F+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL-ASEDKPFLYTVWGVGYKFDE 226 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 120/220 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+ L L ++ +QVD D Y + D A++D+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+ + R +LPIL+LTAR +DKVE L AGADDY+TKPF E++AR+++L RR Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +S +DL EL + I+L+ E+ IM L+ +V SKDSL+ +++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + LRKK+ I T+RGQGY Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 14/232 (6%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL----------NEHIPDIAIVDL 52 +LV+ED L+R + + +Q+ G+ A D EA + + + I+D+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 LP +GL L R R ++PIL+++A+ S D+V L GADDY+ KPF + E++AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 QALMRRNSGLA---SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 +AL+RR V+ + ++ E + L+ EY ++E +R+ +V Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 ++ L+ Q++ + +S T+DV + LR+KI+ + I TVRG GY F Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L H L ++ G+ VD A D ++ + + D+ I+DL LP DGL Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R R+N L IL+LTAR+ +++V L GADDY+ KPFH E++AR++AL+RR+ Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ ++D + + + +N++ + LT E+ I+ L+R+ G+V++++ L+ ++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLF 220 ++T+ V + LR+K++ I TV G GY Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+V+D +R LK+ ++ ++ +A + +EA E+ ++DL LP+ DG+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-- 120 + R + PI++LTA+ ++VE +GADDY+ KPF EV+ R++AL+RR Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 A VI ++D + +++ + LT EY ++ L + KV ++ L Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQ--EVITTVRGQGYLFELR 223 + +++ + T+D + RLR+K+ + +I TV G GY FE++ Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVK 234 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+++D+ + ++ + G++V A KE + E PD+ I+D+ +PD DGL Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--N 119 + +R R D +PIL++T +S D+V L GADDY+ KPF EE++AR++AL+RR + Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + VDLS R+ I+ + E+ ++ +++ +V++++ LM +++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ES+ ++V +G LR K++AQ +I TVRG GY+ Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED L L+ + ++V A D K A ++ + D+ ++D+ LPD +G+ Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R++ +PIL+LTA + ++ V L++GADDY+ KPF E+ AR+ AL RR Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 GLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 VI++ +++ + + + E I LTA E+ ++ L +N G++VS+D ++ + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ +DV + LRKK+ + ++I T++G GY+ + Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIK 223 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L ++ ++ G+ VD +D A + LN ++ I+DLGLP DGL Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L++R R+ +P+LVLTAR++ D++ L AGADDY+ KPF + E+ AR++AL+RR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D +++S I L E+ ++ L+ G+V+++D L LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E ES+ ++V + LRKK + E+I TVRG GYL + Sbjct: 196 WDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGYLVD 232 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 V+V+ED + L+V + G +V A + + A + E D+ I+DL LPD DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR R+ LPI++LTAR Q++V+ L GADDY+ KPF +E++AR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 LAS-QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ + ++L RE++++ I+LT E+ ++E +R+ +V ++ +L+ +++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +S+ ++V + LR+KI + +++I TV G GY Sbjct: 198 FTYVGDSNIVEVHISNLREKIG-DHERKLIRTVYGVGYTLR 237 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED + + +K +++ G +VD A D + + D+ I+DL LP +G Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R + ++PI++LTA DK++ GADDY+ KPF E+MAR++ ++R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 LASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + I + ++D ++E++ + I LTA EY ++E L + GKV+SK + + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ I+V M LRKKI + +++ T G GY Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 12/231 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VV+D +R L + AG +V+ A EA + + PD+ ++D+ LPD DG ++ Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R ++ P+L LTAR+ QDKV L+ G DDYVTKPF +EEV+AR++A++RR Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 --ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 +I + +++ ++S + I L+ EY ++ L+ N G+V+SK ++ ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 DAELRESHTIDVLMGRLRKKI----------QAQYPQEVITTVRGQGYLFE 221 ++ ++ + LRKK+ + +I T RG GY+ Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 244 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D+A L L Q+ + VD A D + A+ +N D I+D+GLPD +G+ Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL +R R ++ PIL+LTA ++ + KV+ L+AGADDYV KPF EE+ AR++AL RR++ Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+ +VD + E+ D +++T EYT++E +R+ +V S D+++ L+ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 + + + LR+K++A + I TV G GY + Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248 Score = 84.8 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 2/128 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V+ ++D+ + L+ + G Q E+A L PD+ ++D+ +P+ +GL Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + R R+++ LPIL L+ + + + + GADD+++K E+ R+ ++R Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 SGLASQVI 127 ++ Sbjct: 633 GRAVPALL 640 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L V+D+ + L+ + G +V A +EA + PD+ I+DL +P DG Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ ++ +PI++L+AR D+V G DDY TKPF E+ R++A++RR Sbjct: 64 TYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 122 LA---SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 ++ +D ++R +++N+ ++LT ++ ++ + N +V +K L+ ++ Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + + + +T+ V + RLR+K++ E I TV G GY FE Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D + +++ ++ G V A +EA PD+ I+D+ LPD DG Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR R++ + ++ LTAR++ +DK+ L+ G DDY+TKPF +EE++AR++A++RR Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 LASQ------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 A + +++ ++D + D+ ++L+ E++++ + N +V+S+ ++ Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ E +D + LR+K+ +I T RG GY Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHG-PPLIHTQRGFGYALR 246 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 8/219 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED L L++++ + VD D ++ H D+ I+DL LP +GL + Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R+ R S PI+++TA+ DKV L GADDY+ KPF IEE++AR++A++RR Sbjct: 64 CRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 +I + + ++++N I+LT EY ++ L N V+ ++ ++ ++ Sbjct: 121 QKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 175 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 E++ +DV + LR K++ ++I TVRG GY+ Sbjct: 176 SEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 118/220 (53%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVED L + ++D G V+ A D + + E D ++DL LP G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ R+ PIL+LTAR + + L+ GADDY+ KPF + ++AR+ AL+RR + Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + +D +RR + I+LT E++++E L+RN G SK ++ ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 RE + ++V +G LR+KI + I TVRG GYL Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLM 220 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ + ++ ++ GHQ+ +D + + PD+ I+D LP DGL Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 +L ++ R+ + IL+L+A +++++ L GADDY+ KPFH EE++AR++AL RRN Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 S + ++ LS + ++ I+LTA E +I+E +R G + S++ ++ ++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ +DV M RLRKKI + Q +I T RG GY Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 1/220 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+ ED + ++ +++ GH V D L E D+ I+D+ +P +GL Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 LIRRWRS-NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L +R P+++LTA + +D V+ L AGADDY+ KPF +E+ AR++AL+RRN Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D + R D I LT EY ++E + + G +S+ +L+ ++ Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ +DV + LR KI + +++I TV G GY+ Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIM 243 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 ++VL++ED+A + +++ + AG+ A D +E PD I+D+ LP +G Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 + + R D +PI++LT + D ++ L+ GADDY+ KPF E++AR++ ++RR Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S + + + + IN+E +++ E + L N +V+++ L+ ++ Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + + T+DV + R+R K+ + I T+RG GY FE Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEE 228 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGL 60 RVL+VED+ +R ++ + G + + D + A L+ D+ ++D+ LP DG+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 SLIRRWRSNDV---SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 S+ R R + ++P+++LTAR+ V L GADDY+TKPF ++ +R++A +R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RNS-----GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 R + + P ++DL RR ++ E ++LTA E+ ++ L N G+V S++ Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 +M L+ E + DV + LR+KI+ I TVRG GY F Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVVED A +R + ++ G Q +AED A LNE PD+ ++D LP G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 I+ + +P+++LTAR +D+V L GADDY+TKPF +E++AR++A+MRR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 SGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S +A +VI + +D + + +E +++ E+ ++ + + +V S++ L+ + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 + E T+DV + RLRK ++ ++ TVRG GY F R Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 143/221 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +L+ + DA + +D A D +E + E+ D AI+D+GLP DG+ Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +LI R R + PIL+LTAR++WQDKVE L AGADDY+TKPFH EE++AR++AL+RR + Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S VI P+ ++ S E+ D+ + L+ EY + E + + G+V SK L+ +Y Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +S+ I+V + RLRKK+ +I T+RGQGY + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLK 221 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D A +R L ++ AG+ V A + A + PD+ I+D+ LPD G + Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 +R R P++ L+AR+S +DK+ L+ G DDYVTKPF ++E++AR+ A++RR Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 I + +D + E+ + +I L+ E+ ++ + N +V+SK ++ ++ Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 +S ++ + +R+K+ A + +I T RG GY+ R Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--------HIPDIAIVDL 52 M +LVVED+ + L+ ++ G++V A D + + ++DL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 GLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 LP G+ + + R++ V P+L+LTA + D+V L GADDY+ KPF EE++AR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 QALMRRNSGLASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 +AL+RR+ + + ++D + +S + E + LTA E ++E + + G+V+ Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 S++ ++ ++ E ++ +DV + RLR KI ITTVRG GY E Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 3/220 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D A +R+ K ++ AG++V A E + PD+ ++DL LP DG+ + Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R + IL+LTAR D+V L GADDY+TKPF E++AR++A++RR G Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 A--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S V+ ++D RE ++++LT E+ ++ L RN+ +V+S++ L+ +++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +DV + ++R+KI+A + +I T RG GY F Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 138/220 (62%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED + ++ + + + EA L E D ++DLGLPD DGL Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+R WR++ + P+LVL+AR++ D+V L+ GADDY+ KPF ++EV+AR+++L+RR++ Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G+ + V++ P ++DL R ++ ++LT+ EY ++E ++N +V+++ + +++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + E++ IDV + RLR+K++A +I T+RG GY Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D + + + ++ G +V+ + A + PD+ ++D+ L D DG + Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R +P L LTAR++ QDKV L+ G DDYVTKPF + E++AR++A++RR Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 LA-----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + ++D RE+ +++LTA EY +++ L+ N V+++ L+ Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ E ++ + LR+K+ +I TVRG GY+ L Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNV-EPPLIHTVRGVGYVLRL 304 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 101/220 (45%), Positives = 146/220 (66%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ +LK +Q+A + +D A D + Y E D AI+D+GLP DG+ Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLI+ R VS PILVLTAR+SWQDKV L AGADDY+TKPFH EE++ARM+AL+RR + Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS ++S PF V+L+ E+ ++ ++ L++ EY + E L+ + G+V SK L +Y Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +S+ I+V + RLRKK+ ++I T+RGQGY Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 105/220 (47%), Positives = 142/220 (64%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED ALLR L+ ++ G+ VD AED + A Y E+ D+A+VDLGLP GL Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I+ WR PIL+LTAR WQDKV L AGADDY+ KPFH+ E+MAR+ AL+RR+S Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G +S VI P +D + + I+ ++LTA+EY +E L+ G+ VSK L LY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 R+S+ I+V +GRLRKK+ + ITT+RGQGY F Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRF 220 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVLVVED+ LR L +++ + VD A D E E+ D+ ++D+ LP G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R S P+L+LTAR++ QD+V+ L+ GADDY+TKPF IEE++AR++AL+RR + Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G V+++ +D + R++ E + +TA EYT++E L + G+VVS+ +L L+ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + S+ +DV + LRKK+ E+ITT RG GY E Sbjct: 191 EDDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH-IPDIAIVDLGLPDED- 58 M+VL++ED+ L ++ + +AG+ A DA D+ ++DL LP D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 G+++ RR R D ++PIL+LTA + + KVE L AGADDY+ KPFH+ E++AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 QALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 +AL+RR+ + V+++ +D S R + I+LTA E+ ++E L+RN G++VS Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L+ + S+ + + LR+K+ A +VI T RG GY+ E Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ + L Q G + A + + + D+ ++D+ LP +DG Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R + P+L+L+A+ S ++V+ L +GADDY+ KPF E++AR Q+L RR Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 GLASQ--VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +Q +S +DL + L N I+L E+ +++ ++ N V+SK +++ Q+ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVL+ RLR K+ + +I T+RG GY+ + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLK 223 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +L+VED + ++ + + G++V E + Y + D+ ++D+ LPD GL Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R + LPIL+LTA ++ +D+V L AGADDY+ KPF +E++AR++AL+RR Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 LASQ-VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + P +D + R + + E + LT E+ ++ L+ +G+ +S+D++ +++ Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 R ++ IDV + +R+K+ + I TVRG GY Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED++ + L Q G V + D + + D+ I+D+ LP +DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R + P+++L+A+ S +++V+ L +GADDY+ KPF E++AR Q LMRR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 GLASQVIS--LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + Q + P +DL + L + I + E+ +M+ L+ N V+SK +++ + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +++ +DVL+ RLR K+ + +I T+RG GY+ + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D +R + + +++A +AE+ +EA L + D+ ++D+ +P DG +L Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--NS 120 R R +PIL LTAR DKV+ L G DDY+ KPF E++AR++A+MRR ++ Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ +S P +D R+++++ + + LT E+ ++ L +++G+V S++ L+ Q++ Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + T+D + LR K++ + I TV G GY FE+ Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQ--ASDFIQTVWGIGYKFEV 224 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVV+D + +KV ++ G V+ A++ + A + PD I+D+ +P DG + Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L+ + R P L LTA++ +D++ L+ GADDYVTKPF +EEV+ R++ ++RR + Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 ---LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S +I+ +D E++ EV+ L+ E+ ++ L+ N V+SK ++ + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + + ++ + LR+KI + +I TVRG GY+ Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKIDTK-EPRLIHTVRGVGYVLR 252 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +V+VV+D + L+ ++ G+ V A D +A + E PDI ++D+ LP DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R +PI++LTA++S DKV L GADDYVTKPF E++AR++A +RR+ Sbjct: 64 VCREVRKK-YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 LAS-------QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 + I++ + + E I+LT E+ + L ++ G+V++++ L Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + ++ + T+DV + RLR+KI+ E I T RG GY + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQ 230 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%) Query: 1 MR-VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDG 59 M+ +LVV+D + L+ ++ +V A D +A + D I+DL LP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 +++ ++ R + PI++LTA+++ DK+ L GADDYVTKPF E++AR++A+ RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 SG-------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 + AS+ I + VD + D + LT E+ ++ + KV S++ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 L+ ++ E+ +D+ + LR+KI+ + TVRG GY E Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D+AL+ + +++AG VD A D A PD+ ++DL LP DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + RR R+ +P+++LTAR D++ L GADDYVTKPF E+ R+Q+++RR + Sbjct: 117 VFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 ---GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G + V+ VD + R + + + LT E+ ++ L+R G+ ++ L+ Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 ++ + + T+ V + RLR+KI+ ++ TV G GY ++ Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 279 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VV+D +R L + AG +V+ A EA + P++ ++D+ LPD DG ++ Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RR R N + +P+L LTAR+ QDK+ L+ G DDYVTKPF +EEV+AR++A++RR Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 ASQ--VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +I + +++ +++ I+L+ EY ++ L+ N G+V+SK ++ ++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 DAELRESHTIDVLMGRLRKKI------QAQYPQ----EVITTVRGQGYLFEL 222 ++ ++ + LRKKI Q +I T RG GY+ Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIRE 240 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 123/218 (56%), Gaps = 3/218 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED L ++++++ + VD D K + D+ ++DL LP+ +GL Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ R + + PI+++TA+ DKV L GADDY+ KPF IEE++AR++A++RR Sbjct: 63 ICRQIR-QNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--Q 119 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 +I + +D +++++ + + LT EY ++ L+ N V+ ++ ++ ++ Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E++ +DV + LR K++ + I TVRG GY+ Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYV 217 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 126/220 (57%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L LK ++ D + D ++ Y L + D I+D+ LP DG+ Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ R +S P+L+LTAR D+V L +GADDY+ KPF +E+ AR+ AL+RRN Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S I + +D + + + +++I LTA EY I+E L N +VS + ++ ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 D + + S+ I V + LR+KI+ + +I T++G+GY Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+++L L + AG QV A D PD+ I+D+ LP DG S+ Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR----R 118 R + + ++PI++LTA ++ L GA DYV KPF + E++AR++A++R + Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +S V+ + P Q+D + R + D I+L+ E+ ++ L+ N G +S+D L+ ++ Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + L + TIDV + LR+K++ +I TVRG GY F+ Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQ 226 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+ + L++ + DAGH VD D + D+ ++D+ LP DG Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + RR R PIL++TA+ DKV L GADDY+TKPF I EV+AR++AL RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 I L V+ +R++++ E + LT+ E+ ++ R+ G+ S+D L Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFELR 223 + +++ SHT++ + RLR KI+ + TV G GY F R Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 124/220 (56%), Gaps = 1/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M VL++ED+ + H+ +++AGH V+ A D +E D+ ++D LP DGL Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ + P+L+L+A +++ L AG DDY+ KPF + E++AR++AL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +A + +DL R ++ I LT E+ I+E L+R+ G+VV++ L+ ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 +++ ID + RLR+K+ + +I TVRG GY+ Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYV 220 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD-EDGL 60 +LVVED + L+ + G++V A+ A + + PD+ I+D+ LP DGL Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RR R+ +PIL+LTAR+ D+V L AGADDY+ KPF EE++AR++AL+RR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 ------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 V +D + R D I+LT EY ++ +R+ +V+++D + Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 M +++ ES+ ++V + LR+ ++A ++ TVRG GY L Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRL 233 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L++ED+ + LK +++ G+ A D H + I D+ LP DG L Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + R + +P+L+LTA S DK++ AGADDY+ KPF E+ AR++ L++R + Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 123 -----ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 A + ++ Q+D +RRE+ +I+L+ EY ++ +++N +V+S+ + + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ IDV + LRKKI + ++I T G G++ Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFIL 226 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED+A +R L + AG+ V A D + A + PD+ ++D+ LPD DG L Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R+ V P+L LTAR +D++ LS+G DDYVTKPFH++EV+ R++A++RR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 AS-----QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 AS + +D S E+ ++L+ E+ ++ + + +V+ K ++ + Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ ++ +D + LR+K+ ++ TVRG GY L Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRL 237 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 120/221 (54%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR LV+E++A H +K + + G+ VD D ++ Y+ D+ +V+ LP +G+ Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L +R R S+PIL+LT + S D V L AG DD++ KPF E+ AR++AL+R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ +D RE++ + L+ EY+++E +RN +V+++ +++ L+ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 HT+ + RLR+K++ ++I TV G GY + Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRLK 221 Score = 97.5 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 13/134 (9%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L V+D+ + + L + G +V +D + L + P++ I+DL +P +G+ L Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589 Query: 63 IRRWRSND--VSLPILVLTARES---WQDKVEVLSAGADDYVTKPFHIEEVMARM----- 112 + R++ +LPIL L+AR+ QD + AGADDY++KPF E++ R+ Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDIYQ---AGADDYISKPFAEAELITRIFNRLD 646 Query: 113 QALMRRNSGLASQV 126 + + R+ + Sbjct: 647 RIHLLRSLAETDPI 660 Score = 67.4 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 20/162 (12%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD-ED-G 59 RVLV++D+ L L+ + Q+D ++A L E PD+ ++DL PD +D G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L+ + LP+LV T R+ D+ V G + +++K ++V+ ++ +++ Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQST 523 Query: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETL 161 ++Q++++ D +++N ++E L Sbjct: 524 PTASTQILAVDD---DP----VTLN-----------RLLELL 547 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L + ++ G+ +D D + L D+ I+DLGLP DGL Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+RR R+ SLP+L+LTAR++ D++ L AGADDY+ KPF + E+ AR++AL+RR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A +I +D + +++ N + LT EY ++ L+ GKV +++ L LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E ES+T++V + LRKK+ +I TVRG GYL E++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKL----FNGLIRTVRGIGYLVEVK 219 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED + ++ ++ G A DA EA D+ I+DLGLP +DGL Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ + R SLPI++LTAR+ +DK+ GADDY+TKPF EE++ R++A +R N G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 ----LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 V+ +DL R++ + D ++L+A E+T+ ET R+ G+V+S++ L+ + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ S+ +DV +G LRKK+ E+I TVRG GY +L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLG----NELIETVRGMGYRLKL 223 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVV+D + L+ ++ A V +A + +A + + DI ++DL LP+ G Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 +++R R + P++VLTA+++ DKV L GADDYV KPF EV+AR+ A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 119 ---NSGLASQVISLPPFQ------VDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 ++ + I + +D + ++S+ND+ +KLT E+ +M+ L+ + +V+ Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 S+D L+ ++ +S +D+ + LR+KI+ + + T+RG GY F Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + L + D + VD A ++ D+ I+D+ LP+ DG+ Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R+ + +LP+L +TA + +K+ L+AGADDY+TKPF +EE++AR++AL+RR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 GLAS-QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + +++++ REL+ + + LT E+ ++E +RN + S+++++ L+ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 ++ T+ M LR+K++ ++I TV G GY + Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223 Score = 74.0 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L V+D++ L LK ++ +Q+ + E L + PD+ ++D+ +P G+ Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 LIRRWRSND--VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L + R + LPI+ TA + AG D+ + K +++A ++ M+R+ Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 SGLA 123 Sbjct: 660 YLQQ 663 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D + +K + G++V A + +EA + PD+ ++D +P+ G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R R +PI++LTA+ DK+ G DDYV KPF + E+ AR++ +++R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 122 LASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V++ + +RE+ + + + LT E+ ++E ++N GK S+ L+ Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFELR 223 +A TID + LRKKI+ E I TV G GY + R Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPR 228 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D+ + + + G+ V A DA+EA + D+ IVD+ LP DG Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 LIRRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L+R+ R + P++ L+A+ DKV L GADDY+TKPF I E++AR++A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 120 SGLASQV------ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 A + I ++D+ R E+ ++D+ + LT E+ ++ L N GKV S+D Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 L+ +L+ ++ T+DV + RLR KI+ + I TVRG+GY F Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFR 257 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D L L + G+ VD + K D+ I+D LP++ GL Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R ++P+L LTA+++ D+V+ L AG DDY+ KPF + E++AR++AL+RR+S Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 GLASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + + +++ ++D+ + +I+L+ E +++ + N ++++ +M Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 L+ + ES+ I L+ LR+KI+ +I TV G+GY F Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED + +L ++++G+Q + + L D+ I+D+ LPD +G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R +P++ LTA++ D+V+ L GADDY+ KPF E++AR+++L+RR Sbjct: 61 SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 L +S+ ++DL ++ N +I+L+ E+ ++ L+ N ++V++ + +++ Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ IDV + RLR KI Y ++I T+RG GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKISV 221 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 130/221 (58%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL+VED+ + + +++ G +V AE + + D+ IVD LP+ DGL+ Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 LI R VS P+LVL+A + D+V L AG DDY+TKPF +EE+ AR++ALMRR + Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ + P +DL R ++ + E I L E+ ++E L+R +V+++ L+ ++ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + +++ +DV +G+LR+KI Q +I ++RG G++ + Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLRV 256 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 135/222 (60%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+ + ++ +++AG VD + +E + + AI+D+ LP+ DGL Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+I R+ P+L+L+A++S D+++ L G DDY+ KPF E++ R+QAL+RR+ Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + Q +S+ P ++DL R+++ + I+L A EY ++ + N G +SK S++ ++Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 +++ +DVL+ RLR KI + Q++I T+RG GY+ Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLR 222 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVV+D +R L + ++ G+QV A ++A + H PD+ ++D+ LPD G Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R ++P+L LT D+V L G DD+VTKPF ++EV AR++AL+RR+ G Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 LAS----QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + Q+D ++ D + LT E+ ++ L+ N G+V+S+ + + Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ + S +D + LR+K+ Q +I TVRG GY Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPG-QSLIRTVRGVGYQL 248 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+V+D + ++ + + G V + ++A L D+ I+D+GLP DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R+ R+ P+++LTAR D+V L GADDYV KPF E++AR++AL+RR + Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 LASQVISLPP-------FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 + + Q+D +RR + D + L E+ ++ L + G+V +++ L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 + Q++ E ++ T+DV + RLR K+ + +I T G GY F Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVVED A +R + + ++ AG++V +AE ++A L E +PD+ ++DL LP DGL Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R I++LTA+ DK+ L GADDY+ KPF+ E++AR++A++RR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 LASQV--ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + +D + +L N++ ++LT EY++++ + N GK + ++ ++ ++ Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + ++ T+DV + RLR+KI+ I T+ G GY ++ Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQ 229 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 124/220 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+VED+ L L + + G+Q D D Y D+ I+D+ LP DG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ + R +S+P+L+LTAR++ DK+ L +GADDY+TKPF E++A ++AL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + ++ ++L +L+ + I L+ E+++ + L+ N G+VVSKD L+ +++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E + ++ + LRKK++ I T+R GY F Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 128/222 (57%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED +L+ + + G+Q D + ++ ++ D+ I+D+ LP DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 +I R + P+L LTA+++ +DKV+ L GADDY+ KPF E++AR++ L+RR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A+ V ++ VD+ RR + + + I LT EY ++E L++ G+V+ + + ++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 +++ IDV + RLR KI + ++I TVRG GY+ E+R Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIR 224 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 125/221 (56%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV ED + + L + +AG+ VD A+D EA + H D I D+ +P DG+ Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SLIR+ R N P ++LTAR +D+V+ L AGADDY+ KPF + E++AR++A++RR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++S+ ++DL I LT E++++E L+ + + VSK ++ +++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + ++ + V + LR+KI + +I T RG GY Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIR 221 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 1/219 (0%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 L+VED+ L L+ +++ G VD A D +EAD D+ ++D+ LP DGLSL+ Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP-FHIEEVMARMQALMRRNSGL 122 +RWR++ V+ +L+LTA+ DKV L GADDY++K +EE+ AR++AL+RR Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 V+ ++D + R + I LT EY ++E L + GKVV++ + LY + Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + S+ +DV + LR K+ ++ ++I T G+GY+ Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLR 220 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 116/220 (52%), Gaps = 1/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+V+D+ L +Q+ G+ V+ A A N + + I+D LP + G+ Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 R R V PIL+LTAR++ D++ L GADDY+TKPF EE++A ++AL+RR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 I+L +D R ++ + LT EY I+ L+ + G++VS+ L ++ Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + IDV M LR+K+ +I TVRGQG+ Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRI 219 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +LVV+D + ++V +++ G + + + ++A + ++AI+D+ LPD DG Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 +L +R R N P+++LTA+E DK+ L+ GADDY+TKPF E++AR++A +RR Sbjct: 63 TLCQRIRENHN-FPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 119 -----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 +I+ +D+ E ++N++ I LT E++I+ L N G+VVS + Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 174 LMLQLYPDAELRES-HTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLFE 221 L +++ D S +T+ V + LR+K+ + + I TV G GY E Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VLV +D+ +R +++ + ++ A D +EA + + PD+ I+D+ +P DG Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 R R PI++LTA++ D+V L GADDYVTKPF E++AR++A+MRR Sbjct: 93 EACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 GLAS-------QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 + +DL +RE+ + E + E+ ++ L+++ G V S++ Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 L+ Q++ + TIDV + ++R+++ + I TV G GY F Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPY-DCIQTVWGIGYKF 257 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED+ + ++ ++ D + E +PD+ ++DL LP DGL + Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 IRRWRSN-DVSLP-ILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR--- 117 R R P IL+LTA+ D++ LS GADDY+ KPF E++AR++AL+R Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 118 RNSGLASQVISLPPFQVDLSRRELSI----NDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 R Q+ FQVDL + + S E ++LT E+ ++ T + G+V ++ Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 L+ +L+ + + +D + RLRKKI+ I TV G GY FE Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 2/219 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVV+D+A L L + ++ G++ D A + PDI ++DL LP +GL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R+ ++PI++LTA+ D V+ L AGADDYVTKPF E++AR++A +RR Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 ++ +S+ Q+D+ +++ + I LT E+ ++ L R +V +++ L+ Q++ Sbjct: 136 GQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVI-TTVRGQGYL 219 ++ ++V + RLR KI+ + I TVRG GY Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 1 MR--VLVVEDNALLRHHLKVQIQDAG-HQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDE 57 M+ ++++ED+ + ++ ++ G V + + EH P++ ++D+ LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGLSLIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 +G + RR R + + +PI++LTAR DK+ L GADDY+TKPF + E+MAR+ A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 MRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 +RR G S V +D + + + I LT E+ +++ L ++ G+V++++ L+ Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ E+ T+DV + R+R+K+ I T G GY F Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL++ED + +++++ + A D + + D+ ++D+ LP DG++ Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ RS PI++LTAR+S D+V L +GADDY+ KPF IEE++AR++ + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 L---ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +++ V + R ++ N++ ++LT EY ++ T ++N +V+ +D L+ + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + E++ +DV + LR KI I+TVRG GY+ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMR 250 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L++ED+ ++ LK + G+ V A D P + ++DL LP +G + Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 R R + +PI++LTA+ D V L GADDYVTKPF I+E++AR++A +RR Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 V + + D + R L N + + L+ E+ ++ L+ N G+ +S+D +M ++ Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVI-TTVRGQGYLFEL 222 +ID + LR KI+ + I TVR GY FEL Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFEL 227 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED L L ++ G + D A DI ++DL LP G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R+ S+P++++TAR+S DKV L GADDYVTKP+ E++AR++A++RR + Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 ASQ-----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 V+ P ++D+ R +S+N E I L E+ ++E L+RN+G+V+++ L+ + Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 ++ + ++ T+DV + RLR KI+ V + TVRG GY E Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VED A+L + ++ +G+ VD A D KEA + D+ I+DL LP DG+ Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ + R + + IL+L+AR + DK+ L GA+DY+ KPF +E+ AR++ L+RR+ Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +IS +D S++ + ++ E+I +T EY I+E L+ + KV+S + L+ ++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQ-YPQEVITTVRGQGYLF 220 S+++ + LRKKI EVI T+RGQGY+ Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYII 221 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++EDN + + + +AG+ +D D ++ Y + + I+D+ LP DG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ R+ P++ LTAR+S D+V L +GA+DY+ KPF E++AR++A +R++ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 L S + + ++D +S ++ I LT E+ ++ L G+++ + + +++ Sbjct: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++T+DV + RLR K+ +P+++I T+RG GY F Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ + L+ ++ G+ + A D KE E + ++D+ LP +GL Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + R +PI++LTA + QD ++ L GADDYVTKPF +E++AR++A+ RR Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 GL--ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + ++ P D S +S+++E I LT E I+E L+ N GK +S++ ++ + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQ-AQYPQEVITTVRGQGYLFEL 222 + ++ +DV +G+LRKK+ + +I T RG GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLNL 225 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLV+ED L L + G+ + + D+ I+D+ LP +G Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ R R N V PI++LTAR + ++ V+ L GADDY+TKPF + E++AR+ A++RR Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 -------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 + +VI++ + + E+ +N E + L E+ ++ L++ G V+++D L Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 M ++ + T+DV + LRKK++ I ++RG GY Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKL 228 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LV+ED L L + + G++V + + D+ ++DL LP +G Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ + RS V P+++LTA+ + ++ V+ L +GADDY+TKPF + E++AR+ A++RR++G Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 LAS---------QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 I L + + E+++N E I L E+ ++ L R G V+++D Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 LM ++ + T+DV + LRKK++ I ++RG GY Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL++ED+ + +++ ++ G+ A D + E PD +D+ LP DG L Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-- 120 + R ++ +PI++LT + QDK++ L GADDYV KPF E++ARM+A+MRR Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 QV+SL VD + + D+ I + E ++ L +V ++ L+ Q++ Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 A + TIDV + R+R+K+ + I T+RG GY F + Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEK 230 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 L+V+D+A +R ++ ++ AG V +A D A L +H D+ ++DL LP+ DG ++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 RRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLA 123 R + LP+++LTA +D++ L GADDY+ KPF E+++R++A++RR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 SQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++ P VD+++R + D+V+ LT E+ ++ L + +V S++ L+ +++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFELR 223 +S T+DV + RLR+K+ A E + TV GQGY F ++ Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVK 225 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LV +D+ L+ + G V A D +EA PD+ I+D+ +P DG + Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R+ ++PIL+LTAR DKV GADDYVTKPF + E++ R+ A++RR Sbjct: 66 VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 -LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S+ + +++ S R + + D +LT E+ ++ + + G +++SL+ +++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + T+ V + RLR+KI+ I TV G GY F+ Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFD 226 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +++VVED+ LR L+++++ G+ V E +A P++ I+D+ LPD DG Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R + IL+LTA +DK+ AGADDY+TKPF EE++AR++AL+RR + Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 SQ I ++ ++R + N + + L+ E+ ++ L +N +VVSK+ ++ ++ Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +T++V + +RKK+ E+I T+RG GY Sbjct: 186 DYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKL 220 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+ ED+ + + + + G+Q+ A D +EA + + D+ I+D+ +P DG + Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R R +PI+ L+A+ S DK+ L GADDY+TKPF+ E++AR+ A +RR L Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 123 ASQV---------ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 V I +D +R +++ ++ I LT E+ I+ L + KV S + Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 174 LMLQLYPDA-ELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + Q++ +A +T+ V + LRKK+ Q+ I TV G GY F+ Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL +ED+ + + + +++ G VD + ++ D+ +D LP DGL+ Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++ RS V P+L+L+A ++V L AG DDY+TKPF EE+ AR++ L+RR+ Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 LASQ---VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + +++ P +DL R++ + I L EY ++E ++R+ G+ +++ L + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ IDV MGRLRKKI +I TVRG GY+ Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L+ +K + G VD ++ L D I+DL LP DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R WR P+L+LTAR++ ++VE L GADDY+ KPF + EV AR++ALMRR + Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G AS + +D +R ++ E + L E+ ++E L+RN G+V+S+ + +LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E S+ ++V + LR+K+ + I TV G GY + Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 130/219 (59%), Gaps = 2/219 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 + L+VED+ LL L+ + G +VD A+D +A + DI I+D+ +P DG+ Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R +PI++LTA+ +DK+E L AGADDY+TKPF +E++ R++ ++RR + Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + + I L +DL ++ + I LT E+ +++ L +N K + ++ L+ +++ Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 A +S+ +DV + +R K++ + ++I T+RG+GY+ Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDKP-PKLILTIRGRGYML 220 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED+ +R +++ + D GH+V +A D+ +VDL LPD DG Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN-- 119 RR R +PI+++TAR D V L AGADDYVTKPF ++E+ AR++AL+RR+ Sbjct: 80 CCRRLR-RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 G A +VI + ++ + N E + LT E+ ++ L +V S++ L+ ++ Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVIT-TVRGQGYLFE 221 + + +DV + RLR KI+ I TVRG GY + Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQ 242 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 13/231 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN---EHIPDIAIVDLGLPDEDG 59 ++VVED L ++ +++ GH+V+ D A L + PD+ ++DL LP+ DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR- 118 L + RR R + + PIL+LTAR + D+V L GADDY+TKPF + E+ AR+ A++RR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 -------NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSK 171 + + I +D RE++ + + LTA E+ ++ L N G+V S+ Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 DSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQ-EVITTVRGQGYLFE 221 D L+ +++ + + T+D + RLRKK+ E I T+ G GY +E Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ L ++ ++ H V+ D + Y+ + D+ I+D + + GL Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 L R+++ PIL+LTAR++ D+V L+ GADDY+ KPF EE+ AR+ AL RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S Q +D E+ +++ LT E+ +++ +R+ KV+++D ++ + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + +D + LRKK+ + ++I VRG GY Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L++ED +R LK ++ G++V A D +E + PD+ ++D+ +P DG + Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L R +PIL+LTA+ +D+V L AGADDY+ KPF +E++AR++A++RR+ Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 LASQV--ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 V + ++D+ ++ + + TA EY ++ L G+ +S++ + ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 A + T+D + LR KI++ I TV G GY E Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVV+D +R LK ++ ++ A D KEA +NE PD+ I+DL LP+ G Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R + PIL+LTA+ + +DKV + GADDY+ KPF + E++AR++A++RR++ Sbjct: 64 VCQKIRQDK-QTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 LASQ----VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 A + V ++ +R ++ +N LT E+ I+ TLIRN G+V +++ L + Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + TID + +RKK+ + ++I TV G GY FE Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKLNLE-KNQLIITVYGVGYKFE 225 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 7/226 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L L + G +V A D D ++D+ LPD DG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 + R R ++PI+++TAR+ D++ L GADDY+TKPF EE++ARM A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 I++ D L+ ++LT E ++ L+ + G V+S+ + Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ + ++ ++V + RLR+K+ A V+ VRG GY Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALG-PPVVENVRGFGYRL 225 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LV +D +R L ++ G++ A + EA L E + ++D+ +P+ DGL+ Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 R R +PI++LTAR D++ L GADDY+TKPF E++AR++A +RR Sbjct: 67 ACMRIREFSN-VPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + +D+ R +S+ + + LT E+ ++ I N+ KV S++ L+ Q+ Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + T+D + LR K+ I TV G GY FE Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFE 226 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L+VED+ + + L + +AG+ + A+ ++A L+ + DI ++D+ LP DG+ Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR-- 118 L + R PILVL+A S DK+++L GADDY++KPFH EE+++R++AL RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + Q +S +D +++ ND+ I+ + EY + L+ N KV+S+ ++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 ++ ++ +DV + +R KI Q++I TV+G GYL + Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDE-TEQKIIHTVKGTGYLIK 223 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 121/219 (55%), Gaps = 2/219 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 + +LVV+D + +K+ ++D G + A D EA E P I I+D+ LP +G Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + + + I++LTA++ D+V+ L GADDY+ KPF +E++AR+ A +R + Sbjct: 208 EVCSEIKKWVNAS-IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + V+S+ F ++ E+ + +++L+ EY +++ L+ NNG V+SK +++ +++ Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 + + ++V + LR KI +I TVRG GY Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYK 364 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ + L + ++ G++V A+D + + PD+ ++D+ LP+ +G + Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R P++VL+A+ DK+ L+ GADDYV KPF ++E++AR++A++RR Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 123 A----SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 A ++ VD++ R ++ ++LTA E+ ++ + + G+ +++ L+ Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 + + T+D M +LR K + TVRG GY FE Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 129/227 (56%), Gaps = 9/227 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 ++VV+D +R + + +++ G++V AE+ +A L + D+ I+D+ +P+ DG+ Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG- 121 + R +PI++L+A+ DK+ L+AGADDY+TKPF+ E++AR+++ +RR Sbjct: 66 CTKIREEKN-MPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124 Query: 122 ------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 + +I + ++ + E+ + ++ ++LT E+ I+E L RN G V S + + Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 +++ + + +T+ V + +LR+KI+ + + TV G GY E Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI-PDIAIVDLGLPDEDG 59 +R+L+V+D L L++++ G++V+ A D PD+ ++D LPD G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + + +R RS+ V+ PIL+LT + D+V+ L AG DDY+ KPF IEE+MAR++A+ RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 SG---------LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVS 170 G S +S+ ++ R++ + + I+L+ EY ++ L+R NGKV+ Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 KDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + +M ++ + + + +DV + LR+K++ + +I TVRG G++ Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFILR 242 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ L+ ++ ++ AGH+ A D EAD H PD+ ++D LP DGL+L Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 RWR + P+L+LTAR +V L+ GADDY+ KPF +E++AR+QAL+RR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 ASQVISLPP-FQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + S VD + R++ ++ I L A E+ ++ L + G+V S+D L+ +++ Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQE-VITTVRGQGYLF 220 TIDV + +LR+K++ + + TV G GY F Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLP-DEDGL 60 R L++ED+AL ++ ++ G QV D + D+ I+D LP DGL Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +++ RS P+LVL+A + ++V L AG DDY+TKPF E+ AR++AL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 GLASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 A + L +++L R + + L E+ ++ L+++ ++V++ L+ ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 +++ IDV + RLR K+ + +I TVRG GY R Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDR 254 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 70/217 (32%), Positives = 130/217 (59%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+ ED+ LR + +++ VD D + A + D I+D+ +P DG+ Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R R+ +++PIL+LTAR++ ++++ L AGADDY+TKPFH E+ AR++AL+RR S Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + +++ ++D ++ + ++ LTA E+T++ L R+ G++VS+ L ++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQG 217 + ++ IDV + RLR+K+ + ++ T RGQG Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQG 217 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+V+D +R+ L++ + G++V +AED ++ E D+ I+D+ LP +DG S Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++R P+++LTAR+ +D+V GADDY+TKPF+ + ++AR+++L+R+ + Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + +I + ++ + +S + I+L EY ++ LI+NN +S++ L+ +++ Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 L + TID + LRKKI I T+RG GY +L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKLDL 223 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D LR L++ ++ G V +A D + A Y PD+ ++DL +P+ G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R + + + P++VLTA+ DK+ L GADDYVTKPF++ E++AR++A++RR Sbjct: 64 LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122 Query: 123 A--SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 V+ +D + R + + + LT E+ I+ TL+ G+V S+ L+ ++ Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 DA TIDV + LR KI+A + I TV G GY F Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D + + ++ A +QV ++ +A + + + D I+DL LP DG+ Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R D +PI++LTA+ S DK+ L GADDY+TKPF +E+++R++ ++RR Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 123 -----ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + +D R + N+E I+LT E+ ++ L +N +V+S+D ++ + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 ++ ++ +D+ + LR K++ ++I T+RG GY F Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED + ++++++ G+ VD D + + D+ I+D+ LP +G+ Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 ++RR R +P+++LTA++ DKV L GA+DY+TKPF IEE++AR++ + + S Sbjct: 65 VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 LASQVIS---LPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 +V + Q+D+ R ++ + I LT E+ +++ L+ N +S+++++ ++ Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + L +++ +DV + LR KI ++ ++ I T+RG GY F Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFR 226 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVLVVED+ + ++ AG V+ A D A PD+ ++D LP DG Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR RS +PI++LTA S +++ L AGADDY++KPF E++ R+Q+++RR+ G Sbjct: 101 VCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 122 --LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 +L F +D S + E + LTA E+ ++ L+++ G+ S++ L+ ++ Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVIT-TVRGQGYLF 220 + T+ V + RLR+KI+ I TV G GY Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 129/224 (57%), Gaps = 6/224 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+VED L L ++ G + D A + DI ++DL LP G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-- 120 ++ R+ S+P++++TAR+S DKV L GADDYVTKP+ E++AR++A++RR Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 121 --GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 ++ V+ P ++D+ R +S+N + I L E+ ++E L+RN+G+V+++ L+ ++ Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFE 221 + + ++ T+DV + RLR KI+A V + TVRG GY E Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 93/221 (42%), Positives = 136/221 (61%), Gaps = 4/221 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+VED L L+ ++ AG VD A+D +EA + D ++DLGLP DG+ Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++RRWR+ + +P+L+LTAR W +KV AGADDYVTKPF +EEV+ R++AL+RR + Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G S + P ++D + S+ + LTA EY I+ L+ G+ VS+ ++ +Y Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 R+S+ IDVL+GRLR+K+ A +I TVRG GY E Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGA----PLIHTVRGLGYRLE 217 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 8/220 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED + +K +Q GHQ + D A + D+ I+D+ LP DG + Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 I P + L+A+ S D+++ S GADDY+TKPF + E++AR++A++RR Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 AS ++D S ++ N + ++ T EY ++E L+ N +S++ L+ ++ Sbjct: 120 AS-CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ T+DV + +LRKK++ ++ I TV GY E+ Sbjct: 179 FEGDTRTVDVHIQKLRKKLEW---EDRIKTVYKLGYRLEV 215 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 131/219 (59%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ALL LK + +G VD D + A L ++DLGLP DGL Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R P+LVLTAR+ +DKV L GADDYV KPF ++EV AR++ALMRR Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G ++ ++ L ++D + R ++ + + LT E+ ++ L++++G V+++ L QLY Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E S+ ++V + LR+K+ +VI TVRG GY+ Sbjct: 181 WDEGVGSNALEVHVHHLRRKLG----NDVIRTVRGVGYM 215 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVVED+ + L + + G+ V+ A+D A + + D+ I+D+ LPD DG Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 L + R + P+L+L+A DK++ L GADDY+TKP H E+++R+ AL RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V+ +V+L + + I L+A E+ + L+ N KV+++ ++ + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + ++ +DV + LR KI +P ++I TV+G GY+ Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMI 222 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+V+D +R+ +++ + G+ + +A + KEA + H + I+D+ +P+ DG Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R +++LPIL+LTAR DKV+ L GADDY+TKPF EE++AR+ AL+RR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 N ++ + ++D+ ++ + D + LT E+ +++ L+ N +V ++D L+L++ Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFEL 222 + L + T+D + +R K++ + +I TV G GY + Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 13/233 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VL+V+D +R L ++ G+ V A D + A + PD+ ++D+ +P DGL+ Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-- 120 RR R+ D +LP+L+LTAR+ D+V L AGADDY+ KPF ++E++AR++AL+RR + Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALT 135 Query: 121 -----------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVV 169 V+ ++D RE++ +I LT EY ++E + + + + Sbjct: 136 GEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQAL 195 Query: 170 SKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ ++ ++ S+++DV + +RKK + ++ TVRG GY Sbjct: 196 TREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYALRT 248 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVV+D +R L+V ++ A + V +A DA++A + + PD+ ++D LP G+ L Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 63 IRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 RR + ++V+ +PI++LTA+ +KV+ L GADDY+TKPF E++AR++A++RR Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + S+ I + +D ++I+D +++ EY ++E + + +V +++ L+ ++ Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E T+DV + RLRK + + I TVRG GY F + Sbjct: 186 GGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRFSNK 229 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED L + V + +V A +A+ L D+ ++D LPD DGL L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++ R++ +P+++LTAR+ D V L +GADDY+TKPF + E+ AR +AL+RR+ Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 AS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 A Q+I ++DL RE+ D + LTA E+ ++ L R+ +V S+ L+ ++ Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 181 DAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGYLF 220 HT++ + RLR K+ +E++ TV G GY F Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 135/230 (58%), Gaps = 11/230 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL+V+D A +R L+ ++ G+ V A D +EA ++ +PD+ I+D+ +P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + + R D +PI++LTA D++ L GADDYV KPF +E+ AR++A++RR + Sbjct: 76 VCQEIR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134 Query: 122 LA-------SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 A S +I+ +DL++R++ ++E I+LT E++++E LI +G+ S+ + Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 175 MLQLYPDAEL--RESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLFE 221 + +++ ++ +DV + RLR K++ ++I T RG GYLF+ Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+LVVEDNA L + ++D +VD A + ++ + ++I D ++D+ +P DG Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +I++ R + P+L LTAR+S +D+V+ L G DDY+ KPF E+ AR++AL+RR+ Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Q I ++ +++ ++ + +KL+ +Y ++E L++N+GK++ ++ + +++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++V + LRKK++ Q+ I TVRG GY+ + + Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKEQ 232 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED L L ++ + VD D + Y I D+ ++D+ LP DGL Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S+++ R ++ P+++LTA+ DKV L +GADDY+ KPF EE++AR++A+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 GL-ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 + + Q++ S +LS + +KLT E ++ LI N SK+ ++ +++ Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 E + ++V + LRKK+ + VI T+RG GY+ E++ Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVK 224 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED+A + L + ++D ++V + D E L + D I+DL LP DGL Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + RR R+ PI++ +AR S ++ L GADDY+ KPF + E++AR++AL+RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 LASQ------VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLM 175 LA + + +D RE S++ + LT E+ ++ R+ GKV S+ L+ Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 LQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLF 220 ++ HT++ + RLR KI+A + V I TV G+GY Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 2/224 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M +L++ED L+ L ++ G+Q D A D D+ ++DL LP G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++++ R +++L+A+ +DK+ L GADDY+TKPF ++E+ AR++A+ RR+ Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLT--AFEYTIMETLIRNNGKVVSKDSLMLQL 178 + + +++ LS + LT + E+ +ME L+RN +V+S+ + ++ Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 + E + +DV + LRKK++ I VRG GY + Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQE 243 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 117/228 (51%), Gaps = 10/228 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL+V+D + ++ ++ +++ A++ + A + PD+ I+D+ LP DG Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R +PIL+L+A+ DK + GADDY+ KPF E+ R++AL+RR+ Sbjct: 66 VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 122 LASQV--------ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 V IS +++ E+ + + + LT E+ ++ + + +V +++ Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 L ++ D + ++ TI V + +LR+KI+ + I TV G GY F Sbjct: 185 LFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 + V+ED+ + L + G V + K A ++ + PDI ++DL +P+ DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 IRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + RS+ +P+++LTA+ + DK+ L GADDYVTKPF E++AR++AL+RR+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 ----GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 A ++ + E++I + + LT ++ ++ L+ + GKV+S+D ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 ++ + TIDV + +LR+ ++ I T+RG GY +E Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG--NCIKTIRGVGYKWEC 227 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VLVV+D+ + +K+ + G +V +D + PD+ I+D+ LP +DGLS Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 L RR R+ + +PI++LTA+ D+V L GADDYV KPF E++AR++A++RR+ Sbjct: 66 LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 122 LASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + P ++ R++ ++ ++T E+ ++ L +N +V +++ L+ + Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + T+DV + RLR K+ A P E + TV G GY F Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKL-ASLPHEYLQTVWGVGYKF 225 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++ VVED L L+ ++ G +VD EA+ L E +PD+ I+D LP G+ Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 L RR R + LPI++LTAR ++V L+ GADDYV KPF E+MAR++A++RR Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123 Query: 120 SGLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S ++ ++D + ++L E+ ++E L+ + G+V S+ L+ + Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + + T+DV +GRLRK + +VI TVRG GY E Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDED 58 MRVL+VED+ L ++ ++ GH +D D + A L+ DI I+DLGLP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL +++ R + P+++LTAR++ D+++ L AG+DDY+TKPF +EE+ ARM+A+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + A +IS +D + ++ + + ++ E+ +++ L+ N G+V+S++ L L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 Y E +S+ ++V + LRK+ A ++I T+RG GY+ E + Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGA----KLIRTIRGVGYMVEKK 230 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L++ED+A + +L D A D +E + + D+ ++D LP DGL Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+ RS+ S P+L+L+A ++V+ L AG DDY+TKPF E++ R++ L +RN Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 G-LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 G A + + +++L R +++ + + L E+ +++ L+ + KV+S+ L ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ IDV + +LR+K + E+I TVRG GY Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+VE++ L + VD A D++ A D+ ++D+ LPDE+G+ Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L R+ R+ + PIL+LT + + D++ AGADDY+TKP+ + E++AR++AL+RR S Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + ++V+ Q+D + E+ + + LT EY ++E +R+ ++ + +L+ ++ Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 E I + LR+K+Q + I T+ G GY + Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+V+D+ L L+ Q+Q G QV D+ + YL PD+ ++D+ +P G+ Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + +S+ LP+L+L+A L+AGADDY+ KP +++ R+ Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 70.5 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD--EDGL 60 VL+++D+ L ++ + ++ D A L PD I+DL P+ E GL Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 +L+ + + ++P+LVLT +VEV GA+ ++ KP EV + L+ R Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRID 602 Query: 121 GLASQVISLPP 131 + ++++ + Sbjct: 603 TINARLLIVDD 613 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L+ L + + VD A+D +E + + D+ ++DL LP DG+ Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S R+ R++ P+L+LT++++ KV L AGADDYV KPF +E++AR++AL+RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 ++ ++D S E++ + +++ LT EY ++E +RN+ ++ S +L+ QL+ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLFE 221 E T+ + LR+K++A ++ I TV G GY + Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222 Score = 84.0 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RV++V+D+ + L+ + G +V ++ + P++ I+ + +P G+ Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 LIRRWRSNDVS--LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 L + R LPIL LT R + ++ AGADDY++KP E++ R+ Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 12/231 (5%) Query: 1 MR---VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDE 57 M+ +L+ +D A + +++ ++ G+ V A D +EA + + D+ ++D+ +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 DG + R+ R+ +PI+ L+A+ S DKV L GADDY+TKPF E++AR+ A +R Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 R-------NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVS 170 R + + + +D RR + + E I+LT E+ I+ L + KV + Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 +++ Q++ D +T+ V + LRKK+ ++I TV G GY F Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVVED+ +R L + AG+ V A+ + A + PD+ ++D+GLPD DG ++ Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR---- 118 R R+ V P+L LTAR +D++ LS+G DDYVTKPFH++EV+ R++A++RR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 119 -NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 + G + ++D E+ I+L+ E+ ++ L+ +VV K ++ + Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ ++ +D + LR+KI + ++I TVRG GY Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDR-FEPQLIQTVRGVGYCL 236 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 125/230 (54%), Gaps = 11/230 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +LVVED L +++++ G+ V A + +EA + ++D+ LP +GL Sbjct: 10 HILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLE 69 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM----- 116 ++RR + P+++LTAR++ DKV L AGA DY+TKPF IEE++AR++ + Sbjct: 70 VLRRL-QQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128 Query: 117 -----RRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSK 171 RR + V Q+ R +++ + I LT E+ +++TL+ N V+++ Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188 Query: 172 DSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + L+ ++ + E++ +DV + LR KI + ++I TVRG GY+ + Sbjct: 189 EVLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVIK 238 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 RVL++ED + +K +Q+ ++ + KEA + D I+DL LPD G Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS- 120 + +R R +PIL+LTA+ D++ L GADDY+TKPF +E++AR++A+MRR + Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 121 -GLASQVISL--PPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 GL + +I L +VDL E DE+++LTA E+ ++ I+N+GKV S+D L+++ Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + + TIDV + LR KI+ +Y + I TV G GY F Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYY-KYIVTVYGVGYRF 227 >UniRef50_C3QD36 Two-component system response regulator n=8 Tax=Bacteroides RepID=C3QD36_9BACE Length = 228 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L++ED + L +++ G+Q A D H D+ I D+ LP DG L Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + R + ++PIL+LTA S DK++ AGADDY+ KPF E+ AR++ L++R +G Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123 Query: 123 A---SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 A Q + ++DL R+++ N IKL+ EY ++ ++ N +V+S+ + +++ Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR 223 ++ IDV + LRKKI + ++I T G G++ + Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFILTDK 227 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 299 bits (768), Expect = 3e-80, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+ ED+ L L ++Q+ G+ V+ +D A D+ ++D+ LP G Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R +++ +PIL+LTAR DKV L +GADDY+TKPF + E++AR++AL+RR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 LAS---QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 S L VD R E++ + + L+A EY ++ LI + G+ V+++ L+ Q+ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 + + ++ T+DV + LR+K++ + TVRG GY Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 134/219 (61%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +VL+VEDN L + +K + G+ V A DA++A + E D +VD+ LP +G Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R + +++PIL+LTA ++ DKV LS GADDY+TKPF E++AR+++L+RR++ Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + I+ +++ R++++ D V+K++ E+ ++E +RN G V S++ +M +++ + Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ +S+ IDV + LR K++ I TV G GY F Sbjct: 187 EKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRF 225 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 122/220 (55%), Gaps = 2/220 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED+ L L+ ++ G+ V A D + A E + I+DL LP GL + Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +R RS +V PI++LTAR DKV L GADDY++KPF+I+E++AR++A++RR Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 ASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 +S+ ++D R + N + + L++ E+ ++E L R+ G+ V ++ + +++ Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 AELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYLF 220 + TID + RLR K++ I TV G GY F Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN---EHIPDIAIVDLGLPDED 58 R+L+V+D L L ++ GH VD A + A L D+ ++D LP Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GLSL ++ R D + PIL LTA+++ D+VE L AGADDY+ KPF + E++AR++AL+RR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 NSGLAS--QVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 +G + + ++D + +I L+ E+ ++E + + G++++ + + Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ + S+ + + LR++++ E+I V G+GY F Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRF 226 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+VED + + + + AG++V+ A A + + +P++ I+D LP + G+ Sbjct: 4 RILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQ 63 Query: 62 LIRRWR--SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 + R +LPIL+LTA+ DKV L +GADDYVTKPF +E++AR++A++RR Sbjct: 64 FAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQ 123 Query: 120 SGLASQ-VISLPPFQVDLSRRELSI-----NDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 + +++ P ++D S + + I L E+ +++ + N +V S+ S Sbjct: 124 MPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRAS 183 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 L+ +++ E T+DV + RLR + I TVRG GY Sbjct: 184 LLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRI 230 >UniRef50_A6M1X5 Two component transcriptional regulator, winged helix family n=8 Tax=Firmicutes RepID=A6M1X5_CLOB8 Length = 229 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 118/218 (54%), Gaps = 2/218 (0%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+V+D + +K+ ++ G+ V +A D EA + P+I I+D+ LP DG + Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 + +++LTA + DKV+ L GADDY+ KPF +E++AR+ A +R + Sbjct: 71 CSII-KKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPE 129 Query: 123 ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDA 182 S + ++ F+VD E++ ++V+ L +Y ++ L+ NNG +SK ++ +++ Sbjct: 130 LSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYD 189 Query: 183 ELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 E + ++V + LR KI + +I TVRG GY Sbjct: 190 FNGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKM 226 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 119/219 (54%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++LVVED+A + ++ ++D G+ V + +A A +D+ LP+ G Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R R SLP+L+LTAR++ +D+V L +GADDY+TKPF E AR++AL+RR++ Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 + + +D + + + +++ E+ ++ L + G+ +++ +++ +++ Sbjct: 140 AGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWGT 199 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 +++ +D + LR+K++ I+TVRG GY Sbjct: 200 TAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYAL 238 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 142/220 (64%), Gaps = 4/220 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L++ED+ L + ++ AG+ VD + D ++ + + + D AI+DLGLP DGL Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 S++RRWR ++P+L+LTAR SW++KV L GADDY+TKPF IEE++AR++AL+RR S Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A+ IS+ ++D S + +S + + LTA EY + L+ + KVVSK L +Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 + R+S+ I+VL+ RLRKKI A I T RGQGY Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADA----IRTRRGQGYQL 216 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 8/223 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+L+ EDN + LK ++ G AED +A D+ I+DLGLP +DGL+ Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR-RNS 120 ++R R LPI+VLTAR+ D V+ L GA+DY+TKPF EE++AR++ +R R Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 121 GLASQV---ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 G + + +DL R+ + + V++L+A E+ + E L+R+ +V+SK+ L+ + Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ S+ I+V + LR+K + + I TVRG GY Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRL 221 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L+V+D L LK ++ + + VD A + ++ + I+D+ LP DG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ R ++ P+L+LTA+ D+++ L G+DDY+ KPF + E++AR++AL+RR++ Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 + + + ++ ++ + +KLT EY + E L+ N +VV+K +L ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 181 DAELRE--SHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 D S+ IDV + LRKKI + +I T RG GY+ Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDEN-HLIIRTKRGIGYII 234 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 +L+ +DN + L + A D +EA ++ P + ++D+ +P EDG Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R+ R+ +P++++TAR +K+ L GADDY+ KPF EVMAR++A++RR Sbjct: 63 VCRKIRAKS-DVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121 Query: 119 --NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 N + V+S+ +++L L I I LT E M TL N KV ++D+L+ Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFEL 222 L+ +S T+D + RLR K+ I T+ G GY FE+ Sbjct: 182 SLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEV 228 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 6/220 (2%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 VLVV+D +R +++ + V +A D A + + PD+ ++D+ +P DG Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 ++R R ++P+++LTAR D+V+ L GADDY+ KPF E+ AR+QA++RR++G Sbjct: 68 LQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 123 ASQ--VISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 I + + R + LT E+ ++ L + G+V S++ L+ +++ Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLF 220 ++ T+D + LR K+ +I TV G GY F Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRF 224 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 118/219 (53%), Gaps = 2/219 (0%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 R+LVV+D+ L + + +++ G + D +A PD+ ++DL LP DG+ Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + R+ R +PI++LTA+ D V L +GADDYV KPF E++AR++A +R Sbjct: 93 VCRQIRGES-DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151 Query: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 A + + + +D++ ++ E I LT E+ ++ L R +V +++ L+ Q++ Sbjct: 152 KAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 211 Query: 182 AELRESHTIDVLMGRLRKKIQAQY-PQEVITTVRGQGYL 219 ++ ++V + RLR KI+ EV+ TVRG GY Sbjct: 212 RHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ +L + ++ +G+ VD + A L I+DL LPD DG+ Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 SL+R+ R +LP+L+LTAR++ D+V L AG+DDY+ KPF ++E+ AR++AL+RR+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 G A V+ Q+ ++++ E +KLT EY +++ LI +G+V+SKD L LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 E ES+ ++V + LRKK + ++I +RG GY+ Sbjct: 181 WDEGAESNAVEVHIHHLRKK----FYSDLIRNIRGVGYI 215 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+VED+ + +K+ ++ G V D A ++ D+ ++DL LP DG Sbjct: 5 KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQ 64 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 + ++ R PI++LTA+ ++KV+ L GADDYVTKPF I E++AR+ A++RR Sbjct: 65 VCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 LASQV-------ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 +V + D+ + +N+++I + E +++ L+ +V ++ L Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLFEL 222 + ++ E ID+ + RLRK+++++ Q I TV G GY FE+ Sbjct: 184 IEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232 >UniRef50_B4B5Q6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B5Q6_9CHRO Length = 813 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 7/228 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++L +ED+ L L + ++V+ A D + + D+ ++D LP G+ Sbjct: 1 MKILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGI 60 Query: 61 SLIRRWR-------SNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQ 113 L + R S + PIL++T ++ KV L AGADDY+ KP EE++AR++ Sbjct: 61 ELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIR 120 Query: 114 ALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDS 173 AL+RR SG + ++ + + +++ ++ I+L EY ++E +RN ++ S Sbjct: 121 ALLRRKSGERAPMLKWGQLCLCPNSGQVTYLEQKIQLAQKEYKLLELFLRNPEQIFSLSR 180 Query: 174 LMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L+ L+ + + + LR+K++ + + T+ GY + Sbjct: 181 LVDSLWSIEKTPTEGAVRAHIKGLRQKLKQAGVPDPLETIYKMGYRLK 228 Score = 67.0 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 78/184 (42%), Gaps = 29/184 (15%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPD----- 56 ++L+V+D++ L L + +G+Q+ + ++ L + PD+ I+D+ Sbjct: 506 KILIVDDDSSLLKLLSTLLTPSGYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSD 565 Query: 57 --------EDGLSLIRRWRS--NDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIE 106 +G+ L + R+ LP+++L+ + AGADD+++KP Sbjct: 566 QEKERSSFFNGIELCQVIRNDLRWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVAS 625 Query: 107 EVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIK-LTAFEYTIMETLIRNN 165 E++ R+++ +++ +I +S+ + ++ LT L + Sbjct: 626 ELLIRVRSRLKQRKMWK--IIEYDELT------GVSLRRKALEDLTRA-----IHLAQRQ 672 Query: 166 GKVV 169 G+ Sbjct: 673 GQPF 676 Score = 51.2 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGL----PDED 58 +L++E + LR L + G + A EA+ LN ++ ++DL P Sbjct: 382 LLILESDMTLRQLLVKEALTWGIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEP--T 439 Query: 59 GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 GL + SLP ++LTA ES++ ++E G ++ KP +++A + +R+ Sbjct: 440 GLQFLATLNRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTLRQ 499 Query: 119 NSGLASQVISL 129 S +++++ + Sbjct: 500 ASESSAKILIV 510 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 +++L+VED+ + + + G+ D A L + I+D+ LP G Sbjct: 5 IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 ++++ R P+L+L+A+ DK+ L GADDY+ KPF I E+ AR++A +RR Sbjct: 65 EVLQKIREKGN-TPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYL 123 Query: 120 -----SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 + +Q+I ++++ E+ + D + LTA E+ I++ ++N KV +K+ L Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQAQYP-QEVITTVRGQGYLF 220 ++ + + + +T+ V + RLR+KI+ I T+ G GY Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 13/229 (5%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +LVVED L L ++ + G+QV A D + A +H PD+ I+D LP DGL + Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS-- 120 +R R S P+L+LTAR D V L GADDY+TKPF + E++AR++AL+RR+ Sbjct: 68 LRTIRQTK-STPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRI 126 Query: 121 --------GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKD 172 A++V+ +D +++ + + LT E+ I++ L+RN G+ S++ Sbjct: 127 QQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRN 186 Query: 173 SLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 L+ ++ + + ++D M RLRKK+ + I TV G GY + Sbjct: 187 YLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFG--DAIETVWGLGYRLQ 233 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 ++L+++D + LK ++ G+ V A + KE +PD+ ++D+ +PD DG Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDGYE 61 Query: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR--- 118 + R+ R V PI+ L+A++S D+++ + G DDYV KPF ++E++AR+ A +RR Sbjct: 62 VCRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 119 ----NSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSL 174 N +++ +DL RE+ + I LT E+ ++E L + G+V SK+ + Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 175 MLQLYPDAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGYLFE 221 +++ ++ T+ + +R KI+ E I TV G GY +E Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_C8W872 Two component transcriptional regulator, winged helix family n=2 Tax=Atopobium RepID=C8W872_ATOPD Length = 224 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MRVL+ ED + + ++ + VD D A L ++ DIAI+D+ +P G Sbjct: 1 MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASALLALESNMYDIAILDVMMPKMSGF 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 + R+ RS +++PIL+LTA+ DKVE L GADDY+TKPF E++AR++AL RR+S Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 121 GLASQVISLPPFQVDLSRRELSIN--DEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 V+ +D + L+ + ++L+ E I+E +I N+G+++++D L +++ Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180 Query: 179 YPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFE 221 + E + ++V M RKK+ I VRG GY Sbjct: 181 WGFESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGYELR 223 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 3/220 (1%) Query: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62 +L+VED +R L ++ G +V A D EA + PD+ ++DL LP G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 IRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGL 122 +++ R + PI+VLTAR DK+ L GADDY+TKPF E+ R++A++RR+ Sbjct: 65 MKKIRQK-NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 123 ASQV-ISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPD 181 +S+ ++ R E I D ++ LT E+ I+ L N G+V S+ ++ +++ D Sbjct: 124 EQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 182 AELRESHTIDVLMGRLRKKIQAQYPQEV-ITTVRGQGYLF 220 TID + LR KI+A E+ I TV G GY Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 132/218 (60%), Gaps = 4/218 (1%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VED+ L L ++ G+ V+ A A +A L I I+DLGLPD DGL Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++R+ N S+P L+LTAR+S DK+ L +GADDY+ KPF ++E++AR++ + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 180 S +I++ +DL+ +++ ++ +L+ E+ +++ L+ N G++ SK L +LY Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 + S+ I+V + LRKK+ P++ I T+RG GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKL----PKDFIKTIRGVGY 214 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 133/220 (60%), Gaps = 5/220 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 MR+L+VEDN L L +Q G+ VD D ++A Y D+ I+DLGLP GL Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 ++ +WR+ ++ P+L+LTAR SW +++E L AGADDY++KPFH EE+ R+QAL+RR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GLA-SQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 GLA + +D SR+ +S + I+LTA E+ ++ + + +++SK L LY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 PDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYL 219 R+S+ ++V + LR+K+ + VI T RGQGY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKLG----RSVIETRRGQGYI 216 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M+VL+++D LL L+ + G V A D +EA D I+DL LP DG+ Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN- 119 +L R R + I++LTA++ DK+ L GADDY+TKPF+ E++ARM+ L+RR Sbjct: 77 TLCNRIRQQS-DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 120 -SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQL 178 + VD+ R ++ +EVI LT E+ I+ LIRN G+V ++ + + Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 179 YPDAELRESHTIDVLMGRLRKKIQA-QYPQEVITTVRGQGYLFE 221 + + ++ TIDV + LR+K++ + +I T G GY F Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFR 238 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL 60 M++LVV+D + +R+ +++Q++ G++V A D +EA NE PD+ I+D+ LPD DG Sbjct: 19 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 77 Query: 61 SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS 120 L+R +R D +P+L+LTA+ DK+ L GADDYVTKPF+ E++ R++ + RR Sbjct: 78 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137 Query: 121 GL----ASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 + +VI + R++ ++ + I+LT E+ + + + N +V +D L+ Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197 Query: 177 QLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 +++ + + +D+++ RLRKK+ E I T+ G GY + Sbjct: 198 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLDC 241 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.224 0.870 Lambda K H 0.267 0.0684 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,372,049,405 Number of Sequences: 3077464 Number of extensions: 174889578 Number of successful extensions: 526474 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 36685 Number of HSP's successfully gapped in prelim test: 14746 Number of HSP's that attempted gapping in prelim test: 418460 Number of HSP's gapped (non-prelim): 60671 length of query: 223 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 99 effective length of database: 658,790,820 effective search space: 65220291180 effective search space used: 65220291180 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 92 (39.3 bits)