Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP23836
DateThu Jan 5 11:39:41 GMT 2012
Unique Job ID8b81e85bddb4f518

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ys7B_
Top template information
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
Confidence and coverage
Confidence:100.0% Coverage: 99%
221 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGL
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  GLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP
Secondary structure 
SS confidence 
Disorder  ???
??
?
?
Disorder confidence 
 
   .........190.........200.........210.........220...
Sequence  DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ys7 chain B

3D model

Region: 2 - 223
Aligned: 221
Modelled: 222
Confidence: 100.0%
Identity: 33%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2oqr chain A

3D model

Region: 2 - 221
Aligned: 219
Modelled: 220
Confidence: 100.0%
Identity: 34%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 3r0j chain A

3D model

Region: 1 - 221
Aligned: 217
Modelled: 221
Confidence: 100.0%
Identity: 32%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 1kgs chain A

3D model

Region: 1 - 222
Aligned: 217
Modelled: 222
Confidence: 100.0%
Identity: 34%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 2gwr chain A

3D model

Region: 1 - 222
Aligned: 219
Modelled: 222
Confidence: 100.0%
Identity: 32%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 1 - 222
Aligned: 216
Modelled: 222
Confidence: 100.0%
Identity: 22%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 1p2f chain A

3D model

Region: 2 - 221
Aligned: 212
Modelled: 217
Confidence: 100.0%
Identity: 25%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 1zn2 chain A

3D model

Region: 2 - 215
Aligned: 194
Modelled: 199
Confidence: 100.0%
Identity: 19%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 2ayx chain A

3D model

Region: 1 - 125
Aligned: 125
Modelled: 125
Confidence: 99.9%
Identity: 27%
PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain

Phyre2

PDB 3c3w chain B

3D model

Region: 1 - 210
Aligned: 198
Modelled: 205
Confidence: 99.9%
Identity: 23%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 3eq2 chain A

3D model

Region: 2 - 118
Aligned: 114
Modelled: 117
Confidence: 99.9%
Identity: 32%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb

Phyre2

PDB 3bre chain A

3D model

Region: 1 - 118
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 31%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702

Phyre2

PDB 1ny5 chain A

3D model

Region: 1 - 118
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 31%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state

Phyre2

PDB 1rnl chain A

3D model

Region: 1 - 217
Aligned: 194
Modelled: 203
Confidence: 99.9%
Identity: 22%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 1w25 chain B

3D model

Region: 2 - 118
Aligned: 117
Modelled: 117
Confidence: 99.9%
Identity: 28%
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp

Phyre2

PDB 1ny5 chain A domain 1

3D model

Region: 1 - 124
Aligned: 124
Modelled: 124
Confidence: 99.9%
Identity: 29%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 1kgs chain A domain 2

3D model

Region: 1 - 121
Aligned: 121
Modelled: 121
Confidence: 99.9%
Identity: 37%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 2pl1 chain A domain 1

3D model

Region: 2 - 119
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 97%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 3dzd chain A

3D model

Region: 2 - 136
Aligned: 135
Modelled: 135
Confidence: 99.9%
Identity: 24%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state

Phyre2

PDB 1s8n chain A

3D model

Region: 1 - 202
Aligned: 186
Modelled: 193
Confidence: 99.9%
Identity: 24%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2
1
c1ys7B_
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c2oqrA_
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c3r0jA_
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c1kgsA_
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c2gwrA_
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c2hqrA_
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c1p2fA_
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c1zn2A_
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c2ayxA_
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c3c3wB_
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c3eq2A_
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c3breA_
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c1ny5A_
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c1rnlA_
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c1w25B_
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d1ny5a1
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d1kgsa2
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d2pl1a1
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c3dzdA_
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d1s8na_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ys7B_
100.0 33 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
2c2oqrA_
100.0 34 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
3c3r0jA_
100.0 32 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
4c1kgsA_
100.0 34 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
5c2gwrA_
100.0 32 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
6c2hqrA_
100.0 22 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
7c1p2fA_
100.0 25 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
8c1zn2A_
100.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
9c2ayxA_
99.9 27 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
10c3c3wB_
99.9 23 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
11c3eq2A_
99.9 32 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
12c3breA_
99.9 31 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
13c1ny5A_
99.9 31 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
14c1rnlA_
99.9 22 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
15c1w25B_
99.9 28 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
16d1ny5a1
99.9 29 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
17d1kgsa2
99.9 37 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
18d2pl1a1
99.9 97 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
19c3dzdA_
99.9 24 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
20d1s8na_
99.9 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
21d1ys7a2
not modelled 99.9 40 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
22c3i5aA_
not modelled 99.9 30 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
23d2ayxa1
not modelled 99.9 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
24d2a9pa1
not modelled 99.9 42 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
25c3rqiA_
not modelled 99.9 24 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
26d1jbea_
not modelled 99.9 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
27d1peya_
not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
28c2zwmA_
not modelled 99.9 40 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
29d1mvoa_
not modelled 99.9 38 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
30c3cfyA_
not modelled 99.9 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
31c2jrlA_
not modelled 99.9 26 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
32c3hdgE_
not modelled 99.9 21 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
33d1krwa_
not modelled 99.9 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
34d1w25a1
not modelled 99.9 28 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
35d1dbwa_
not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
36c3cu5B_
not modelled 99.9 22 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
37c2rjnA_
not modelled 99.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
38c3gt7A_
not modelled 99.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
39d1qkka_
not modelled 99.9 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
40d1zesa1
not modelled 99.9 41 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41c2qr3A_
not modelled 99.9 18 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
42c2qzjC_
not modelled 99.9 26 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
43d1zh2a1
not modelled 99.9 42 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
44d1u0sy_
not modelled 99.9 32 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
45c3hv2B_
not modelled 99.9 20 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
46d1dz3a_
not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
47c3nhzA_
not modelled 99.9 37 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
48d1p6qa_
not modelled 99.9 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
49c3eulB_
not modelled 99.9 24 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
50c3h1gA_
not modelled 99.9 29 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
51c3b2nA_
not modelled 99.9 21 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
52d1zgza1
not modelled 99.9 30 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
53c3jteA_
not modelled 99.9 19 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
54d1yioa2
not modelled 99.9 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
55d1xhfa1
not modelled 99.9 36 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
56c2zayA_
not modelled 99.9 19 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
57c3t6kB_
not modelled 99.9 34 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
58d1heya_
not modelled 99.9 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
59c3crnA_
not modelled 99.9 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
60c3cz5B_
not modelled 99.9 29 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
61c3cnbC_
not modelled 99.9 19 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
62d1a04a2
not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
63c2qv0A_
not modelled 99.9 24 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
64c3c3mA_
not modelled 99.9 21 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
65d2r25b1
not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
66c2hqoA_
not modelled 99.9 27 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
67c3lteH_
not modelled 99.9 29 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
68d1k66a_
not modelled 99.9 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
69c3hebB_
not modelled 99.9 22 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
70c3khtA_
not modelled 99.9 27 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
71c3a0rB_
not modelled 99.9 31 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
72c2qxyB_
not modelled 99.9 28 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
73c3cg4A_
not modelled 99.9 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
74c2qvgA_
not modelled 99.9 20 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
75c3hzhA_
not modelled 99.9 23 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
76c1a2oB_
not modelled 99.9 28 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
77c2jk1A_
not modelled 99.9 22 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
78d1p2fa2
not modelled 99.9 26 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
79c3kcnA_
not modelled 99.9 23 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
80c3f6cB_
not modelled 99.9 17 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
81c3hdvB_
not modelled 99.9 30 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
82c3t8yA_
not modelled 99.9 31 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
83c3gl9B_
not modelled 99.9 29 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
84c3m6mF_
not modelled 99.9 26 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
85c3grcD_
not modelled 99.9 24 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
86c3cg0A_
not modelled 99.9 24 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
87d1mb3a_
not modelled 99.9 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88d1i3ca_
not modelled 99.9 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
89c3mmnA_
not modelled 99.9 26 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
90c3snkA_
not modelled 99.9 17 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
91c2rdmB_
not modelled 99.9 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
92c3nhmA_
not modelled 99.8 25 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
93d2b4aa1
not modelled 99.8 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
94c3klnC_
not modelled 99.8 13 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
95c3c97A_
not modelled 99.8 23 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
96d1dcfa_
not modelled 99.8 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
97d1a2oa1
not modelled 99.8 27 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
98c2j48A_
not modelled 99.8 21 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
99c3luaA_
not modelled 99.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
100c3eqzB_
not modelled 99.8 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
101c3n0rA_
not modelled 99.8 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
102c3eodA_
not modelled 99.8 29 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
103c3i42A_
not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
104d1w25a2
not modelled 99.8 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
105c3h5iA_
not modelled 99.8 21 PDB header:transcription
Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef
PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans
106c3ilhA_
not modelled 99.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
107d1k68a_
not modelled 99.8 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
108c2nt3A_
not modelled 99.8 22 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator homolog;
PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
109c3ktoA_
not modelled 99.8 16 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica
110d1qo0d_
not modelled 99.8 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Positive regulator of the amidase operon AmiR
111c3lufB_
not modelled 99.8 30 PDB header:signaling protein
Chain: B: PDB Molecule:two-component system response regulator/ggdef
PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein
112d1gxqa_
not modelled 99.7 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
113c3n53B_
not modelled 99.7 33 PDB header:transcription
Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase;
PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus
114c2jzyA_
not modelled 99.7 32 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein pcor;
PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae
115c2qsjB_
not modelled 99.7 23 PDB header:transcription
Chain: B: PDB Molecule:dna-binding response regulator, luxr family;
PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi
116c2hqnA_
not modelled 99.7 21 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
117c2zxjB_
not modelled 99.7 26 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein walr;
PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus
118c3kyiB_
not modelled 99.7 27 PDB header:transferase
Chain: B: PDB Molecule:chey6 protein;
PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides
119c2yxbA_
not modelled 99.7 16 PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
120c2k4jA_
not modelled 99.7 34 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: arsr dna binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0