Phyre 2 Results for P62768

Email | l.a.kelley@imperial.ac.uk
Description | P62768
Date | Thu Jan 5 12:07:50 GMT 2012
Unique Job ID | 8b0e5b8225681ef0

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2dnxA_ |
|  | 32.4 | 16 | PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna
2 | c3t97B_ |
|  | 27.8 | 15 | PDB header:protein transport Chain: B: PDB Molecule:nuclear pore complex protein nup54; PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54
3 | d1s94a_ |
|  | 24.8 | 18 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
4 | c1s94A_ |
|  | 24.8 | 18 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
5 | d2daha1 |
|  | 24.2 | 23 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
6 | d2dnaa1 |
|  | 23.6 | 14 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
7 | d2bwba1 |
|  | 21.9 | 14 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
8 | c2cwbA_ |
|  | 21.8 | 23 | PDB header:protein binding Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
9 | d1veja1 |
|  | 21.3 | 23 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
10 | c1wr1B_ |
|  | 20.4 | 14 | PDB header:signaling protein Chain: B: PDB Molecule:ubiquitin-like protein dsk2; PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
11 | c1m1jA_ |
|  | 18.5 | 14 | PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
12 | c1vp7D_ |
|  | 18.5 | 10 | PDB header:hydrolase Chain: D: PDB Molecule:exodeoxyribonuclease vii small subunit; PDBTitle: crystal structure of exodeoxyribonuclease vii small subunit2 (np_881400.1) from bordetella pertussis at 2.40 a resolution
13 | c2dnaA_ |
|  | 17.6 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:unnamed protein product; PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
14 | c2dahA_ |
|  | 16.8 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquilin-3; PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
15 | c2jy5A_ |
|  | 16.0 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain
16 | c3a2aC_ |
|  | 15.8 | 32 | PDB header:transport protein Chain: C: PDB Molecule:voltage-gated hydrogen channel 1; PDBTitle: the structure of the carboxyl-terminal domain of the human voltage-2 gated proton channel hv1
17 | c1deqO_ |
|  | 14.3 | 10 | PDB header: PDB COMPND:
18 | c2eamA_ |
|  | 11.7 | 31 | PDB header:signaling protein Chain: A: PDB Molecule:putative 47 kda protein; PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein
19 | c1ydiB_ |
|  | 11.6 | 22 | PDB header:cell adhesion, structural protein Chain: B: PDB Molecule:alpha-actinin 4; PDBTitle: human vinculin head domain (vh1, 1-258) in complex with2 human alpha-actinin's vinculin-binding site (residues 731-3 760)
20 | d1o5ha_ |
|  | 10.4 | 15 | Fold:Methenyltetrahydrofolate cyclohydrolase-like Superfamily:Methenyltetrahydrofolate cyclohydrolase-like Family:Methenyltetrahydrofolate cyclohydrolase-like
21 | c1fllA_ |
| not modelled | 10.3 | 13 | PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: molecular basis for cd40 signaling mediated by traf3
22 | c4a1cD_ |
| not modelled | 9.8 | 19 | PDB header:ribosome Chain: D: PDB Molecule:60s ribosomal protein l11; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
23 | c2dl0A_ |
| not modelled | 9.5 | 31 | PDB header:signaling protein Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
24 | c1n73C_ |
| not modelled | 8.7 | 10 | PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide
25 | c2k4pA_ |
| not modelled | 8.2 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:phosphatidylinositol-3,4,5-trisphosphate 5- PDBTitle: solution structure of ship2-sam
26 | d1q08a_ |
| not modelled | 8.1 | 21 | Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:DNA-binding N-terminal domain of transcription activators
27 | d1tafa_ |
| not modelled | 8.0 | 27 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
28 | d2pa2a1 |
| not modelled | 7.7 | 26 | Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L10e
29 | c3c98B_ |
| not modelled | 7.5 | 12 | PDB header:endocytosis/exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: revised structure of the munc18a-syntaxin1 complex
30 | c2qkqA_ |
| not modelled | 7.4 | 19 | PDB header:transferase Chain: A: PDB Molecule:ephrin type-b receptor 4; PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4
31 | d1xn7a_ |
| not modelled | 7.4 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG
32 | c2d46A_ |
| not modelled | 7.3 | 58 | PDB header:metal transport Chain: A: PDB Molecule:calcium channel, voltage-dependent, beta 4 PDBTitle: solution structure of the human beta4a-a domain
33 | d1b0xa_ |
| not modelled | 7.2 | 31 | Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain
34 | c1b0xA_ |
| not modelled | 7.2 | 31 | PDB header:transferase Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase); PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
35 | d1v38a_ |
| not modelled | 6.8 | 38 | Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain
36 | d1ug7a_ |
| not modelled | 6.8 | 46 | Fold:Four-helical up-and-down bundle Superfamily:Domain from hypothetical 2610208m17rik protein Family:Domain from hypothetical 2610208m17rik protein
37 | c2cp8A_ |
| not modelled | 6.7 | 15 | PDB header:protein binding Chain: A: PDB Molecule:next to brca1 gene 1 protein; PDBTitle: solution structure of the rsgi ruh-046, a uba domain from2 human next to brca1 gene 1 protein (kiaa0049 protein)3 r923h variant
38 | c2ke7A_ |
| not modelled | 6.6 | 31 | PDB header:protein binding Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain- PDBTitle: nmr structure of the first sam domain from aida1
39 | c1sfcD_ |
| not modelled | 6.1 | 18 | PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex
40 | d1ez3a_ |
| not modelled | 6.0 | 17 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
41 | c2fxpA_ |
| not modelled | 5.8 | 15 | PDB header:viral protein Chain: A: PDB Molecule:spike glycoprotein; PDBTitle: solution structure of the sars-coronavirus hr2 domain
42 | c3dpqE_ |
| not modelled | 5.7 | 24 | PDB header:chaperone, peptide binding protein Chain: E: PDB Molecule:chaperone protein dnak; PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
43 | c2e8nA_ |
| not modelled | 5.6 | 31 | PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
44 | c3pvpA_ |
| not modelled | 5.6 | 13 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna
45 | c2npsD_ |
| not modelled | 5.5 | 19 | PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex
46 | c2zshB_ |
| not modelled | 5.3 | 27 | PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor
47 | d1sgga_ |
| not modelled | 5.3 | 13 | Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain
48 | d1gm5a1 |
| not modelled | 5.2 | 17 | Fold:Four-helical up-and-down bundle Superfamily:RecG, N-terminal domain Family:RecG, N-terminal domain
49 | c3zqsB_ |
| not modelled | 5.2 | 19 | PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl; PDBTitle: human fancl central domain