Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	Q	N	N	T	E	M	T	F	Q	I	Q	R	I	Y	T	K	D	I	S	F	E	A	P	N	A	P	H	V	F	Q	K	D	W	Q	P	E	V	K	L	D	L	D	T	A	S	S	Q	L	A	D	D	V	Y	E	V	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?				?	?																?	?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	V	T	V	T	A	S	L	G	E	E	T	A	F	L	C	E	V	Q	Q	G	G	I	F	S	I	A	G	I	E	G	T	Q	M	A	H	C	L	G	A	Y	C	P	N	I	L	F	P	Y	A	R	E	C	I	T	S	M	V	S	R
Secondary structure
SS confidence
Disorder								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Sequence		G	T	F	P	Q	L	N	L	A	P	V	N	F	D	A	L	F	M	N	Y	L	Q	Q	Q	A	G	E	G	T	E	E	H	Q	D	A
Secondary structure
SS confidence
Disorder				?																							?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ozb chain G Region: 1 - 141 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 55% Fold: SecB-like Superfamily: SecB-like Family: Bacterial protein-export protein SecB Phyre2 PDB 1ozb chain A Region: 9 - 150 Aligned: 142 Modelled: 142 Confidence: 100.0% Identity: 57% Fold: SecB-like Superfamily: SecB-like Family: Bacterial protein-export protein SecB Phyre2 PDB 1qyn chain A Region: 10 - 142 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 100% Fold: SecB-like Superfamily: SecB-like Family: Bacterial protein-export protein SecB Phyre2 PDB 1oga chain E domain 2 Region: 52 - 83 Aligned: 32 Modelled: 32 Confidence: 48.0% Identity: 31% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1sm3 chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 46.8% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1clz chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 42.5% Identity: 24% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1t66 chain D domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 41.6% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1kcr chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 39.0% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1mex chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 36.6% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1h0d chain B domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 35.7% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1fe8 chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 34.7% Identity: 24% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1mju chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 33.2% Identity: 24% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1orq chain B domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 31.6% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 2ccv chain A domain 1 Region: 15 - 83 Aligned: 64 Modelled: 69 Confidence: 30.5% Identity: 16% Fold: HPA-like Superfamily: Agglutinin HPA-like Family: Agglutinin HPA-like Phyre2 PDB 1pz5 chain B domain 2 Region: 45 - 82 Aligned: 38 Modelled: 38 Confidence: 30.2% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1q0y chain H domain 2 Region: 29 - 80 Aligned: 52 Modelled: 52 Confidence: 29.8% Identity: 27% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1q0x chain H domain 2 Region: 29 - 80 Aligned: 52 Modelled: 52 Confidence: 29.8% Identity: 27% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 3ilq chain D Region: 45 - 83 Aligned: 37 Modelled: 39 Confidence: 29.3% Identity: 16% PDB header:immune system Chain: D: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of mcd1d with bound glycolipid bbgl-2c from2 borrelia burgdorferi Phyre2 PDB 1c1e chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 29.2% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 PDB 1kcu chain H domain 2 Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 29.2% Identity: 22% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C1 set domains (antibody constant domain-like) Phyre2 1 d1ozbg_ 2 d1ozba_ 3 d1qyna_ 4 d1ogae2 5 d1sm3h2 6 d1clzh2 7 d1t66d2 8 d1kcrh2 9 d1mexh2 10 d1h0db2 11 d1fe8h2 12 d1mjuh2 13 d1orqb2 14 d2ccva1 15 d1pz5b2 16 d1q0yh2 17 d1q0xh2 18 c3ilqD_ 19 d1c1eh2 20 d1kcuh2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ozbg_ 100.0 55 Fold:SecB-like Superfamily:SecB-like Family:Bacterial protein-export protein SecB 2 d1ozba_ 100.0 57 Fold:SecB-like Superfamily:SecB-like Family:Bacterial protein-export protein SecB 3 d1qyna_ 100.0 100 Fold:SecB-like Superfamily:SecB-like Family:Bacterial protein-export protein SecB 4 d1ogae2 48.0 31 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 5 d1sm3h2 46.8 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 6 d1clzh2 42.5 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 7 d1t66d2 41.6 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 8 d1kcrh2 39.0 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 9 d1mexh2 36.6 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 10 d1h0db2 35.7 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 11 d1fe8h2 34.7 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 12 d1mjuh2 33.2 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 13 d1orqb2 31.6 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 14 d2ccva1 30.5 16 Fold:HPA-like Superfamily:Agglutinin HPA-like Family:Agglutinin HPA-like 15 d1pz5b2 30.2 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 16 d1q0yh2 29.8 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 17 d1q0xh2 29.8 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 18 c3ilqD_ 29.3 16 PDB header:immune system Chain: D: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of mcd1d with bound glycolipid bbgl-2c from2 borrelia burgdorferi 19 d1c1eh2 29.2 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 20 d1kcuh2 29.2 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 21 d1kcvh2 not modelled 29.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 22 d1wejh2 not modelled 28.8 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 23 d2jelh2 not modelled 28.4 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 24 d1c5ch2 not modelled 28.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 25 d1i1ca1 not modelled 27.5 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 26 d1nfdf2 not modelled 25.5 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 27 d1kfah2 not modelled 25.2 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 28 d1fh5h2 not modelled 25.0 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 29 c3quzB_ not modelled 24.8 16 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of the mouse cd1d-nu-alpha-galcer-inkt tcr complex 30 c3ta3B_ not modelled 24.8 16 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of the mouse cd1d-glc-dag-s2-inkt tcr complex 31 c3quxB_ not modelled 24.2 15 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of the mouse cd1d-alpha-c-galcer-inkt tcr complex 32 d1a6tb2 not modelled 24.1 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 33 c3ubxE_ not modelled 24.1 13 PDB header:immune system Chain: E: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of the mouse cd1d-c20:2-agalcer-l363 mab fab complex 34 c3quyB_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of the mouse cd1d-bnnh-gsl-1'-inkt tcr complex 35 c3rugD_ not modelled 24.1 13 PDB header:immune system Chain: D: PDB Molecule:beta-2 microglobulin; PDBTitle: crystal structure of valpha10-vbeta8.1 nkt tcr in complex with cd1d-2 alphaglucosylceramide (c20:2) 36 c3rzcB_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of the self-antigen igb3 bound to mouse cd1d and in complex2 with the inkt tcr 37 c3to4B_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of mouse valpha14vbeta2-mousecd1d-alpha-galactosylceramide 38 c3ma7D_ not modelled 24.1 13 PDB header:immune system Chain: D: PDB Molecule:beta-2 microglobulin; PDBTitle: crystal structure of cardiolipin bound to mouse cd1d 39 c3arbB_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: ternary crystal structure of the nkt tcr-cd1d-alpha-galactosylceramide2 analogue-och 40 c3argB_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-alpha-2 glucosylceramide(c20:2) 41 c3ma7B_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: crystal structure of cardiolipin bound to mouse cd1d 42 c1z5lD_ not modelled 24.1 13 PDB header:immune system Chain: D: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of a highly potent short-chain galactosyl ceramide agonist2 bound to cd1d 43 c3rugB_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: crystal structure of valpha10-vbeta8.1 nkt tcr in complex with cd1d-2 alphaglucosylceramide (c20:2) 44 c1z5lB_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: structure of a highly potent short-chain galactosyl ceramide agonist2 bound to cd1d 45 c3tn0B_ not modelled 24.1 13 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: structure of mouse va14vb8.2nkt tcr-mouse cd1d-a-c-galactosylceramide2 complex 46 d2g60h1 not modelled 24.0 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 47 d1q72h2 not modelled 23.7 27 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 48 c3na4A_ not modelled 23.5 17 PDB header:immune system Chain: A: PDB Molecule:beta-2-microglobulin; PDBTitle: d53p beta-2 microglobulin mutant 49 d1qqda1 not modelled 22.7 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 50 d2fath2 not modelled 22.7 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 51 d1neza1 not modelled 22.4 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 52 d1dn0b2 not modelled 22.3 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 53 d2fika1 not modelled 22.2 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 54 d1pskh2 not modelled 22.1 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 55 d2h26a1 not modelled 22.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 56 c3areB_ not modelled 22.0 16 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-4'deoxy-alpha-2 galactosylceramide 57 c3ardB_ not modelled 22.0 16 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-3'deoxy-alpha-2 galactosylceramide 58 d1a3rh2 not modelled 21.8 25 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 59 d1teth2 not modelled 21.5 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 60 d1nldh2 not modelled 21.5 24 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 61 d1mcoh2 not modelled 21.3 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 62 d1vgka1 not modelled 21.2 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 63 c3fonA_ not modelled 20.8 20 PDB header:immune system Chain: A: PDB Molecule:mhc; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai 64 d1qo3a1 not modelled 20.6 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 65 d1nyed_ not modelled 20.6 12 Fold:OsmC-like Superfamily:OsmC-like Family:Ohr/OsmC resistance proteins 66 c2q6wD_ not modelled 20.5 17 PDB header:immune system Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia 67 d1pg7x2 not modelled 20.4 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 68 c1p1zA_ not modelled 20.2 20 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: x-ray crystal structure of the lectin-like natural killer2 cell receptor ly-49c bound to its mhc class i ligand h-2kb 69 d1k8ia1 not modelled 20.1 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 70 d1je6a1 not modelled 20.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 71 d1hyrc1 not modelled 20.1 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 72 d1lk3h2 not modelled 19.9 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 73 c3pqyB_ not modelled 19.3 16 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224 74 c3pqyG_ not modelled 19.3 16 PDB header:immune system Chain: G: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224 75 c3g08B_ not modelled 19.1 11 PDB header:immune system Chain: B: PDB Molecule:beta-2 microglobulin; PDBTitle: crystal structure of the alpha-galactosylceramide analog och in2 complex with mouse cd1d 76 c2fikB_ not modelled 19.1 11 PDB header:immune system Chain: B: PDB Molecule:b(2)-microglobulin; PDBTitle: structure of a microbial glycosphingolipid bound to mouse cd1d 77 c1je6A_ not modelled 19.0 13 PDB header:immune system Chain: A: PDB Molecule:mhc class i chain-related protein; PDBTitle: structure of the mhc class i homolog micb 78 d1osph2 not modelled 19.0 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 79 d1kjva1 not modelled 18.8 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 80 c3mroB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with melan-2 a mart1 decapeptide variant 81 c3mrqB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with melan-2 a mart1 decapeptide variant 82 c3qeqB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: the complex between tcr dmf4 and human class i mhc hla-a2 with the2 bound mart-1(27-35) nonameric peptide 83 c3oxsB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of hla a*02:07 bound to hbv core 18-27 84 c3ox8B_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of hla a*02:03 bound to hbv core 18-27 85 c3mriB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcv2 ns3-1073-1081 nonapeptide g4m-v5w variant 86 c3pwlB_ not modelled 18.7 17 PDB header:protein binding Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: human class i mhc hla-a2 in complex with the hud peptide 87 c3pwpB_ not modelled 18.7 17 PDB header:protein binding Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: the complex between tcr a6 and human class i mhc hla-a2 with the bound2 hud peptide 88 c3pwlE_ not modelled 18.7 17 PDB header:protein binding Chain: E: PDB Molecule:beta-2-microglobulin; PDBTitle: human class i mhc hla-a2 in complex with the hud peptide 89 c3oxrB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of hla a*02:06 bound to hbv core 18-27 90 d1k5nb_ not modelled 18.7 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like) 91 c3qzwE_ not modelled 18.7 17 PDB header:immune system Chain: E: PDB Molecule:beta-2-microglobulin; PDBTitle: plasticity of human cd8 binding to peptide-hla-a*2402 92 c3qzwB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: plasticity of human cd8 binding to peptide-hla-a*2402 93 c3am8C_ not modelled 18.7 17 PDB header:immune system Chain: C: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of a human major histocompatibilty complex 94 c3mrfB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with ebv2 bmlf1-280-288 nonapeptide t4p variant 95 c3mrcB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcmv2 pp65-495-503 nonapeptide v6c variant 96 c3mr9B_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcmv2 pp65-495-503 nonapeptide m5a variant 97 c3nfjB_ not modelled 18.7 17 PDB header:immune system Chain: B: PDB Molecule:beta-2-microglobulin; PDBTitle: recognition of peptide-mhc by a v-delta/v-beta tcr 98 c1zt7C_ not modelled 18.6 20 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-k PDBTitle: crystal structure of class i mhc h-2kk in complex with a2 nonapeptide 99 d2ig2h2 not modelled 18.4 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C1 set domains (antibody constant domain-like)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0