Phyre 2 Results for P36943

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P36943
Date | Wed Jan 25 15:20:51 GMT 2012
Unique Job ID | 8a7cf1712b5c21f1

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1t16a_
Top template information
Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein
Confidence and coverage
Confidence: | 94.7% | Coverage: | 41%
121 residues ( 41% of your sequence) have been modelled with 94.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | H | Y | K | T | G | H | K | Q | P | R | F | R | Y | S | V | L | A | R | C | V | A | W | A | N | I | S | V | Q | V | L | F | P | L | A | V | T | F | T | P | V | M | A | A | R | A | Q | H | A | V | Q | P | R | L | S | M | G | N | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | V | T | A | D | N | N | V | E | K | N | V | A | S | F | A | A | N | A | G | T | F | L | S | S | Q | P | D | S | D | A | T | R | N | F | I | T | G | M | A | T | A | K | A | N | Q | E | I | Q | E | W | L | G | K | Y | G | T | A | R | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | K | L | N | V | D | K | D | F | S | L | K | D | S | S | L | E | M | L | Y | P | I | Y | D | T | P | T | N | M | L | F | T | Q | G | A | I | H | R | T | D | D | R | T | Q | S | N | I | G | F | G | W | R | H | F | S | G | N | D | W | M | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | G | V | N | T | F | I | D | H | D | L | S | R | S | H | T | R | I | G | V | G | A | E | Y | W | R | D | Y | L | K | L | S | A | N | G | Y | I | R | A | S | G | W | K | K | S | P | D | I | E | D | Y | Q | E | R | P | A | N | G | W | D | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | .
Sequence |  | R | A | E | G | Y | L | P | A | W | P | Q | L | G | A | S | L | M | Y | E | Q | Y | Y | G | D | E | V | G | L | F | G | K | D | K | R | Q | K | D | P | H | A | I | S | A | E | V | T | Y | T | P | V | P | L | T | Q | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1t16a_ |

### PDB 1t16 chain A

Region: 166 - 288
Aligned: 121
Modelled: 123
Confidence: 94.7%
Identity: 10%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Outer membrane protein transport protein

Phyre2
2 |
| c3dwoX_ |

### PDB 3dwo chain X

Region: 165 - 288
Aligned: 124
Modelled: 124
Confidence: 90.1%
Identity: 18%
PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue

Phyre2
3 |
| c2x4mD_ |

### PDB 2x4m chain D

Region: 158 - 276
Aligned: 112
Modelled: 119
Confidence: 88.9%
Identity: 15%
PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla

Phyre2
4 |
| d1i78a_ |

### PDB 1i78 chain A

Region: 158 - 288
Aligned: 126
Modelled: 131
Confidence: 88.6%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: OMPT-like
Family: Outer membrane protease OMPT

Phyre2
5 |
| d1qj8a_ |

### PDB 1qj8 chain A

Region: 159 - 288
Aligned: 119
Modelled: 130
Confidence: 87.1%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
6 |
| d1g90a_ |

### PDB 1g90 chain A

Region: 158 - 288
Aligned: 125
Modelled: 131
Confidence: 85.4%
Identity: 10%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
7 |
| c2f1tB_ |

### PDB 2f1t chain B

Region: 159 - 288
Aligned: 130
Modelled: 130
Confidence: 81.7%
Identity: 12%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2
8 |
| d1qjpa_ |

### PDB 1qjp chain A

Region: 151 - 288
Aligned: 120
Modelled: 122
Confidence: 72.9%
Identity: 11%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
9 |
| c2x27X_ |

### PDB 2x27 chain X

Region: 159 - 288
Aligned: 128
Modelled: 130
Confidence: 70.8%
Identity: 14%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2
10 |
| c2k0lA_ |

### PDB 2k0l chain A

Region: 158 - 288
Aligned: 125
Modelled: 131
Confidence: 67.5%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2
11 |
| d1p4ta_ |

### PDB 1p4t chain A

Region: 158 - 288
Aligned: 126
Modelled: 131
Confidence: 60.5%
Identity: 12%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
12 |
| c2iwvD_ |

### PDB 2iwv chain D

Region: 157 - 288
Aligned: 125
Modelled: 129
Confidence: 50.6%
Identity: 14%
PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation

Phyre2
13 |
| d1pama3 |

### PDB 1pam chain A domain 3

Region: 256 - 282
Aligned: 27
Modelled: 27
Confidence: 50.0%
Identity: 22%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2
14 |
| d1qhoa3 |

### PDB 1qho chain A domain 3

Region: 256 - 282
Aligned: 27
Modelled: 27
Confidence: 43.2%
Identity: 22%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2
15 |
| d3bmva3 |

### PDB 3bmv chain A domain 3

Region: 256 - 291
Aligned: 34
Modelled: 36
Confidence: 42.0%
Identity: 24%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2
16 |
| d1cyga3 |

### PDB 1cyg chain A domain 3

Region: 256 - 282
Aligned: 27
Modelled: 27
Confidence: 39.8%
Identity: 22%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2
17 |
| d1cxla3 |

### PDB 1cxl chain A domain 3

Region: 256 - 282
Aligned: 27
Modelled: 27
Confidence: 38.7%
Identity: 30%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2
18 |
| c3aehB_ |

### PDB 3aeh chain B

Region: 153 - 288
Aligned: 124
Modelled: 136
Confidence: 37.4%
Identity: 11%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2
19 |
| c3nb3C_ |

### PDB 3nb3 chain C

Region: 145 - 288
Aligned: 128
Modelled: 128
Confidence: 37.1%
Identity: 12%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2
20 |
| d1cgta3 |

### PDB 1cgt chain A domain 3

Region: 256 - 282
Aligned: 27
Modelled: 27
Confidence: 34.8%
Identity: 19%
Fold: Glycosyl hydrolase domain
Superfamily: Glycosyl hydrolase domain
Family: alpha-Amylases, C-terminal beta-sheet domain

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1t16a_ |
|  | 94.7 | 10 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein
2 | c3dwoX_ |
|  | 90.1 | 18 | PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
3 | c2x4mD_ |
|  | 88.9 | 15 | PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla
4 | d1i78a_ |
|  | 88.6 | 17 | Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT
5 | d1qj8a_ |
|  | 87.1 | 13 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
6 | d1g90a_ |
|  | 85.4 | 10 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
7 | c2f1tB_ |
|  | 81.7 | 12 | PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw
8 | d1qjpa_ |
|  | 72.9 | 11 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
9 | c2x27X_ |
|  | 70.8 | 14 | PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
10 | c2k0lA_ |
|  | 67.5 | 12 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
11 | d1p4ta_ |
|  | 60.5 | 12 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
12 | c2iwvD_ |
|  | 50.6 | 14 | PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
13 | d1pama3 |
|  | 50.0 | 22 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
14 | d1qhoa3 |
|  | 43.2 | 22 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
15 | d3bmva3 |
|  | 42.0 | 24 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
16 | d1cyga3 |
|  | 39.8 | 22 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
17 | d1cxla3 |
|  | 38.7 | 30 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
18 | c3aehB_ |
|  | 37.4 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp
19 | c3nb3C_ |
|  | 37.1 | 12 | PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
20 | d1cgta3 |
|  | 34.8 | 19 | Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain
21 | c3qraA_ |
| not modelled | 34.5 | 15 | PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
22 | c2hb0B_ |
| not modelled | 30.1 | 24 | PDB header:cell adhesion Chain: B: PDB Molecule:cfa/i fimbrial subunit e; PDBTitle: crystal structure of cfae, the adhesive subunit of cfa/i2 fimbria of enterotoxigenic escherichia coli
23 | c1o75A_ |
| not modelled | 20.3 | 25 | PDB header:lipoproteinullntigen Chain: A: PDB Molecule:47 kda membrane antigen; PDBTitle: tp47, the 47-kilodalton lipoprotein of treponema pallidum
24 | d1osma_ |
| not modelled | 18.3 | 14 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
25 | c3bryB_ |
| not modelled | 17.7 | 15 | PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
26 | d1o75a1 |
| not modelled | 15.4 | 32 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Tp47 lipoprotein, middle and C-terminal domains Family:Tp47 lipoprotein, middle and C-terminal domains
27 | c1qd6C_ |
| not modelled | 14.0 | 18 | PDB header:membrane protein Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla)); PDBTitle: outer membrane phospholipase a from escherichia coli
28 | d2vdfa1 |
| not modelled | 13.7 | 16 | Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane adhesin/invasin OpcA
29 | c2dgwA_ |
| not modelled | 13.5 | 7 | PDB header:rna binding protein Chain: A: PDB Molecule:probable rna-binding protein 19; PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19
30 | d1tlya_ |
| not modelled | 12.7 | 21 | Fold:Transmembrane beta-barrels Superfamily:Tsx-like channel Family:Tsx-like channel
31 | c3f83A_ |
| not modelled | 11.2 | 24 | PDB header:cell adhesion Chain: A: PDB Molecule:fusion of the minor pilin cfae and major pilin cfab; PDBTitle: structure of fusion complex of the minor pilin cfae and major pilin2 cfab of cfa/i pili from etec e. coli
32 | c2ostC_ |
| not modelled | 10.5 | 45 | PDB header:hydrolase/dna Chain: C: PDB Molecule:putative endonuclease; PDBTitle: the structure of a bacterial homing endonuclease : i-ssp6803i
33 | d1b24a2 |
| not modelled | 10.4 | 26 | Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease
34 | c2e12B_ |
| not modelled | 8.8 | 25 | PDB header:translation Chain: B: PDB Molecule:hypothetical protein xcc3642; PDBTitle: the crystal structure of xc5848 from xanthomonas campestris2 adopting a novel variant of sm-like motif
35 | c2hyiJ_ |
| not modelled | 8.3 | 43 | PDB header:hydrolase/rna binding protein/rna Chain: J: PDB Molecule:protein casc3; PDBTitle: structure of the human exon junction complex with a trapped2 dead-box helicase bound to rna
36 | d2akja3 |
| not modelled | 8.2 | 22 | Fold:Nitrite and sulphite reductase 4Fe-4S domain-like Superfamily:Nitrite and sulphite reductase 4Fe-4S domain-like Family:Nitrite and sulphite reductase 4Fe-4S domain-like
37 | c1fw3A_ |
| not modelled | 6.2 | 17 | PDB header:hydrolase, membrane protein Chain: A: PDB Molecule:outer membrane phospholipase a; PDBTitle: outer membrane phospholipase a from escherichia coli
38 | d2icya1 |
| not modelled | 6.0 | 18 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
39 | d1weza_ |
| not modelled | 5.8 | 12 | Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD
40 | d1x40a1 |
| not modelled | 5.4 | 20 | Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain
41 | d2dcfa1 |
| not modelled | 5.3 | 27 | Fold:beta-lactamase/transpeptidase-like Superfamily:beta-lactamase/transpeptidase-like Family:beta-Lactamase/D-ala carboxypeptidase
42 | d3cdda2 |
| not modelled | 5.2 | 14 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0