Phyre 2 alignment of P36943 with c1h4uA_

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Job Description | P36943
Confidence | 3.23% | Date | Wed Jan 25 15:20:51 GMT 2012
Rank | 71 | Aligned Residues | 22
% Identity | 41% | Template | c1h4uA_
PDB info | PDB header:extracellular matrix protein | Chain: A: PDB Molecule:nidogen-1; | PDBTitle: domain g2 of mouse nidogen-1
Resolution | 2.2 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 239 | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | D | I | R | A | E | G | Y | L | P | A | W | P | Q | L | G | A | S | L | M | Y | E | Q | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
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Template Sequence |  | S | T | E | L | E | G | R | V | P | Q | I | P | Y | . | G | A | S | V | H | I | E | P | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 519 | 520 | . | . | . | . | . | . | . | . | . | 530 | . |  | . | . | . | . | . | . | . | . | 540

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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