Phyre 2 alignment of P36943 with d3bmva3

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Job Description | P36943
Confidence | 42.02% | Date | Wed Jan 25 15:20:51 GMT 2012
Rank | 15 | Aligned Residues | 34
% Identity | 24% | Template | d3bmva3
SCOP info | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain
Resolution | 1.60

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 256 | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | M | Y | E | Q | Y | Y | G | D | E | V | G | L | F | G | K | D | K | R | Q | K | D | P | H | A | I | S | A | E | V | T | Y | T | P | V | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | I | Y | E | R | K | F | G | N | N | V | A | L | V | A | I | N | R | N | L | S | T | S | . | . | Y | N | I | T | G | L | Y | T | A | L | P
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  | S | S |  |  | . | . |  |  |  |  | S |  | B |  | S | S |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 419 | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . |  |  | . | . | . | . | . | . | . | . | 450 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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