27/01/2012 04:30:14 : INFO  : Run start: Fri Jan 27 04:30:13 GMT 2012
27/01/2012 04:30:19 : INFO  : Initialised job
27/01/2012 04:30:21 : INFO  : Renaming log file 'phyre2_20120127_043013.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/8a7cf1712b5c21f1/phyre_20120127_043013.log'
27/01/2012 04:30:22 : INFO  : Initialised job:
Sequence
>batch____
MSHYKTGHKQPRFRYSVLARCVAWANISVQVLFPLAVTFTPVMAARAQHAVQPRLSMGNT
TVTADNNVEKNVASFAANAGTFLSSQPDSDATRNFITGMATAKANQEIQEWLGKYGTARV
KLNVDKDFSLKDSSLEMLYPIYDTPTNMLFTQGAIHRTDDRTQSNIGFGWRHFSGNDWMA
GVNTFIDHDLSRSHTRIGVGAEYWRDYLKLSANGYIRASGWKKSPDIEDYQERPANGWDI
RAEGYLPAWPQLGASLMYEQYYGDEVGLFGKDKRQKDPHAISAEVTYTPVPLTQQ

27/01/2012 04:30:23 : INFO  : Checked sequence
27/01/2012 04:30:26 : INFO  : Finding homologues with PSI-BLAST
27/01/2012 04:30:27 : INFO  : PSI-BLAST 3 iterations
27/01/2012 04:32:00 : INFO  : PSI-BLAST 5 iterations
27/01/2012 04:33:18 : INFO  : Finished PSI-BLAST
27/01/2012 04:33:22 : INFO  : Running Buildali to generate a3m file
27/01/2012 04:39:22 : INFO  : Converting to HMM
27/01/2012 04:39:25 : INFO  : Calibrating HMM
27/01/2012 04:39:38 : INFO  : Searching HMM database
27/01/2012 04:45:49 : INFO  : Finished buildali
27/01/2012 04:45:51 : INFO  : Predicting secondary structure
27/01/2012 04:46:01 : INFO  : Predicted secondary structure (PSI-Pred)
27/01/2012 04:46:04 : INFO  : Predicting Disordered regions
27/01/2012 04:46:09 : INFO  : Predicted Disorder (Disopred)
27/01/2012 04:46:12 : INFO  : Running memsat_svm check
27/01/2012 04:49:01 : INFO  : Globular protein
27/01/2012 04:49:02 : INFO  : Predicted Transmembrane (memsat_svm) ID '8a7cf1712b5c21f1'
27/01/2012 04:49:04 : INFO  : Initialising fold library search
27/01/2012 04:49:08 : INFO  : Initialised search input
27/01/2012 04:49:11 : INFO  : Building Ensemble models
27/01/2012 04:49:16 : INFO  : Building hh.d1t16a_.model.1.pdb
27/01/2012 04:49:34 : INFO  : Building hh.c3dwoX_.model.2.pdb
27/01/2012 04:49:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8a7cf1712b5c21f1/hh.c3dwoX_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8a7cf1712b5c21f1/c3dwoX_.2.pdb
27/01/2012 04:49:55 : INFO  : Building d1t16a_.1.pdb
27/01/2012 04:50:14 : INFO  : Building c3dwoX_.2.pdb
27/01/2012 04:50:32 : INFO  : Building c2x4mD_.3.pdb
27/01/2012 04:50:50 : INFO  : Building d1i78a_.4.pdb
27/01/2012 04:51:05 : INFO  : Building d1qj8a_.5.pdb
27/01/2012 04:51:24 : INFO  : Building d1g90a_.6.pdb
27/01/2012 04:51:40 : INFO  : Building c2f1tB_.7.pdb
27/01/2012 04:51:56 : INFO  : Building d1qjpa_.8.pdb
27/01/2012 04:52:12 : INFO  : Building c2x27X_.9.pdb
27/01/2012 04:52:30 : INFO  : Building c2k0lA_.10.pdb
27/01/2012 04:52:47 : INFO  : Building d1p4ta_.11.pdb
27/01/2012 04:53:05 : INFO  : Building c2iwvD_.12.pdb
27/01/2012 04:53:22 : INFO  : Building d1pama3.13.pdb
27/01/2012 04:53:40 : INFO  : Building d1qhoa3.14.pdb
27/01/2012 04:54:00 : INFO  : Building d3bmva3.15.pdb
27/01/2012 04:54:17 : INFO  : Building d1cyga3.16.pdb
27/01/2012 04:54:34 : INFO  : Building d1cxla3.17.pdb
27/01/2012 04:54:51 : INFO  : Building c3aehB_.18.pdb
27/01/2012 04:55:09 : INFO  : Building c3nb3C_.19.pdb
27/01/2012 04:55:27 : INFO  : Building d1cgta3.20.pdb
27/01/2012 04:56:25 : INFO  : Finished HH model building
27/01/2012 04:56:27 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
27/01/2012 04:58:37 : INFO  : html domain output complete ID '8a7cf1712b5c21f1'
27/01/2012 05:17:52 : INFO  : Run end  : Fri Jan 27 05:17:51 GMT 2012
