BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (111 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P43667 Uncharacterized protein ygaH n=113 Tax=Enterobac... 219 2e-56 UniRef50_B0VR77 Putative membrane protein n=14 Tax=Acinetobacter... 54 1e-06 UniRef50_C8S029 Putative uncharacterized protein n=1 Tax=Rhodoba... 54 2e-06 >UniRef50_P43667 Uncharacterized protein ygaH n=113 Tax=Enterobacteriaceae RepID=YGAH_ECOLI Length = 111 Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/111 (100%), Positives = 111/111 (100%) Query: 1 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA 60 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA Sbjct: 1 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA 60 Query: 61 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII 111 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII Sbjct: 61 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII 111 >UniRef50_B0VR77 Putative membrane protein n=14 Tax=Acinetobacter RepID=B0VR77_ACIBS Length = 120 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 71/110 (64%), Gaps = 7/110 (6%) Query: 1 MSYEVLLLGLLVGVANYCFRYLP---LRLRVGNARPTKRGAV--GILLDTIGIASICALL 55 M+ E++L+G++VG+AN+ R+ P ++ GN + +RG++ I L +IGI++I A+L Sbjct: 8 MNLEIILVGIIVGIANFASRFGPFFVIQKLQGNQQ--RRGSIWLKIALGSIGISAISAML 65 Query: 56 VVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAW 105 VV+T P ++ + + L+GF VL ++K + I+ TL +A+ YGL + Sbjct: 66 VVATLPPLLETPNKSLAMLIGFLVLAGLYFKFKKIVPATLTAAIVYGLIY 115 >UniRef50_C8S029 Putative uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S029_9RHOB Length = 106 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 1 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA 60 M +L+L L+VG N+ FR+LP +L + P G + L G A+I L V S Sbjct: 1 MDGSLLMLALIVGGCNWAFRFLPTKLDLSGQAP--EGVLARFLAATGPAAIATLFVASVL 58 Query: 61 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG 102 P V D + P G + A F RS++ TL A YG Sbjct: 59 PMVSGDWAKMAPLGAGVLAVVAVFAWRRSVVQATLAGAAVYG 100 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P43667 Uncharacterized protein ygaH n=113 Tax=Enterobac... 127 1e-28 UniRef50_C8S029 Putative uncharacterized protein n=1 Tax=Rhodoba... 97 1e-19 UniRef50_B0VR77 Putative membrane protein n=14 Tax=Acinetobacter... 90 2e-17 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P43667 Uncharacterized protein ygaH n=113 Tax=Enterobacteriaceae RepID=YGAH_ECOLI Length = 111 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 111/111 (100%), Positives = 111/111 (100%) Query: 1 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA 60 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA Sbjct: 1 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA 60 Query: 61 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII 111 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII Sbjct: 61 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAII 111 >UniRef50_C8S029 Putative uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S029_9RHOB Length = 106 Score = 97.4 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Query: 1 MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLDTIGIASICALLVVSTA 60 M +L+L L+VG N+ FR+LP +L + P G + L G A+I L V S Sbjct: 1 MDGSLLMLALIVGGCNWAFRFLPTKLDLSGQAP--EGVLARFLAATGPAAIATLFVASVL 58 Query: 61 PEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVM 108 P V D + P G + A F RS++ TL A YG + ++ Sbjct: 59 PMVSGDWAKMAPLGAGVLAVVAVFAWRRSVVQATLAGAAVYGAVFALV 106 >UniRef50_B0VR77 Putative membrane protein n=14 Tax=Acinetobacter RepID=B0VR77_ACIBS Length = 120 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 69/113 (61%), Gaps = 3/113 (2%) Query: 1 MSYEVLLLGLLVGVANYCFRYLP---LRLRVGNARPTKRGAVGILLDTIGIASICALLVV 57 M+ E++L+G++VG+AN+ R+ P ++ GN + + I L +IGI++I A+LVV Sbjct: 8 MNLEIILVGIIVGIANFASRFGPFFVIQKLQGNQQRRGSIWLKIALGSIGISAISAMLVV 67 Query: 58 STAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYGLAWKVMAI 110 +T P ++ + + L+GF VL ++K + I+ TL +A+ YGL + + + Sbjct: 68 ATLPPLLETPNKSLAMLIGFLVLAGLYFKFKKIVPATLTAAIVYGLIYTYLPL 120 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.327 0.140 0.361 Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 391,214,739 Number of Sequences: 3077464 Number of extensions: 13187297 Number of successful extensions: 62267 Number of sequences better than 1.0e-01: 13 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 62250 Number of HSP's gapped (non-prelim): 17 length of query: 111 length of database: 1,040,396,356 effective HSP length: 79 effective length of query: 32 effective length of database: 797,276,700 effective search space: 25512854400 effective search space used: 25512854400 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.1 bits)