92 d2hoxa1 Probab=99.96   E-value=1.9e-26  Score=178.50  Aligned_columns=295  Identities=16%

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCC------CCCEEEECCH-HHHHHHHHHHHCCCCCEE-------EEECCHHH
Q ss_conf             445555105579828999999999998289------9648999894-999999999612489768-------97144059
Q batch____        36 TGGDLGLTPGLNQPRVTQRVEQVLADAFHA------QAAALVQGAG-TGAIRAGLAALLKPGQRL-------LVHDAPVY  101 (361)
Q Consensus        36 ~~~~~g~~~~~~~~~~~~~~e~~lA~~~ga------~~~~iv~~sG-t~Ai~~al~~~~~~Gd~v-------i~~~~~~~  101 (361)
                      +....+|.+....++..+.+++.++++.+.      ++..|++++| ++++++++.++++|||.+       ++...++|
T Consensus        86 ~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y  165 (425)
T d2hoxa1          86 PWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFY  165 (425)
T ss_dssp             TTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHH
T ss_conf             55545654566434452899999999988508867887769994688999999999864888612356774357300237


Q ss_pred             HHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCC
Q ss_conf             99999998749649985788867877652027870899704788875317899999999728937999888467743368
Q batch____       102 PTTRVIIEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATLRAAGVPALTDDNYAVMKVARI  181 (361)
Q Consensus       102 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~~~~~~t~lv~~~~~~n~~G~~~dl~~i~~~a~~~g~~livD~a~a~~~~~~~  181 (361)
                      +.+....+..+.+...++.+  .+......+++++++++++|+||+|.+.+       |.++|+++++|++|..+++...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~~~~~~~  236 (425)
T d2hoxa1         166 PVFREQTKYFDKKGYVWAGN--AANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPI  236 (425)
T ss_dssp             HHHHHHHHHSCCTTEEEEEE--GGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCC
T ss_pred             HHHHHHHHHCCCCCCCCCCC--HHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCCCCCCCC
T ss_conf             78999998559974442479--88999724888579998178888560654-------2323968997143234332333


Q ss_pred             CCCCCCCEEEEECHHCCCCCC--EEE-EEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------------HHH
Q ss_conf             000523276640300167885--299-98299999999999761689889789999999998---------------779
Q batch____       182 GCECGANVSTFSCFKLFGPEG--VGA-VVGDADVINRIRATLYSGGSQIQGAQALEVLRGLV---------------FAP  243 (361)
Q Consensus       182 ~~~~g~d~~~~S~~K~~g~~g--~G~-l~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~---------------~~~  243 (361)
                      +...+.+++++|++|.+|-.|  +|| ++.++++.+++...+.......+......+...++               ...
T Consensus       237 ~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~  316 (425)
T d2hoxa1         237 KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNT  316 (425)
T ss_dssp             CSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHH
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             34568549998155101233231018996898999999986410577736899999999960201345655554899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----------CCCCCEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             9999999989999999973030124421036----------778977999817855899999998759088404543345
Q batch____       244 VMHAVQAGVSERLLALLNGGAVPEVKSAVIA----------NAQSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKY  313 (361)
Q Consensus       244 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~----------~~~~~~l~~~l~~~~~~~~~~~l~~~gi~~~~g~~~~~~  313 (361)
                      ...+...+....+.+.|.....-........          .+.+..+|++++....+.+...+.+.||.+.||+.|...
T Consensus       317 ~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG~~  396 (425)
T d2hoxa1         317 FGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEAS  396 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             99999999999999998635763003456554322100137787616998678980899999999669499717023898


Q ss_pred             CCCCCHHHHHCCCCCCCCCCCCCEEEEEECC--CCHHHHHHHHHHHHCC
Q ss_conf             6771012210002576621246447896067--8804689999976324
Q batch____       314 EIPPLFYRLSGTFRQANPQSEHCAIRINPNR--SGEETVLRILRESIAS  360 (361)
Q Consensus       314 ~~~p~~~~~~~~~~~~~~~~~~~~iRls~~~--~~~e~~id~L~~ala~  360 (361)
                                           ...+|+|+..  ++.+..+++|++.+++
T Consensus       397 ---------------------~~~vRiSl~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         397 ---------------------SRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             ---------------------TTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             ---------------------CCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             ---------------------8659999139989999999999998726